Query 010587
Match_columns 506
No_of_seqs 179 out of 2322
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02268 probable polyamine ox 100.0 2.7E-57 5.9E-62 456.9 46.9 434 29-477 1-434 (435)
2 PLN03000 amine oxidase 100.0 7.6E-47 1.7E-51 389.1 43.6 429 26-483 182-629 (881)
3 PLN02529 lysine-specific histo 100.0 1E-46 2.2E-51 387.9 44.3 425 26-479 158-600 (738)
4 PLN02328 lysine-specific histo 100.0 6E-46 1.3E-50 383.4 43.0 429 26-483 236-685 (808)
5 PLN02676 polyamine oxidase 100.0 4.8E-45 1E-49 367.6 45.5 422 26-479 24-475 (487)
6 KOG0029 Amine oxidase [Seconda 100.0 5E-46 1.1E-50 369.4 35.2 434 25-479 12-461 (501)
7 PLN02568 polyamine oxidase 100.0 4E-44 8.7E-49 362.8 45.8 431 26-477 3-535 (539)
8 PLN02976 amine oxidase 100.0 4.5E-44 9.8E-49 376.6 46.0 428 27-479 692-1188(1713)
9 COG1231 Monoamine oxidase [Ami 100.0 3.5E-42 7.5E-47 324.2 27.4 414 26-478 5-448 (450)
10 KOG0685 Flavin-containing amin 100.0 9.1E-40 2E-44 307.0 32.2 427 27-479 20-493 (498)
11 TIGR00562 proto_IX_ox protopor 100.0 1.7E-39 3.7E-44 330.6 33.3 399 28-478 2-461 (462)
12 PRK12416 protoporphyrinogen ox 100.0 5.8E-39 1.3E-43 326.1 34.7 408 28-477 1-461 (463)
13 PRK11883 protoporphyrinogen ox 100.0 1.4E-37 3E-42 316.2 32.4 401 29-475 1-450 (451)
14 PLN02576 protoporphyrinogen ox 100.0 1.1E-37 2.3E-42 319.8 31.2 408 26-478 10-488 (496)
15 COG1232 HemY Protoporphyrinoge 100.0 2.4E-37 5.3E-42 299.6 31.0 403 29-474 1-443 (444)
16 PRK07233 hypothetical protein; 100.0 2.2E-37 4.8E-42 313.3 28.1 406 30-479 1-433 (434)
17 TIGR02731 phytoene_desat phyto 100.0 2.1E-35 4.5E-40 299.2 35.6 404 30-473 1-452 (453)
18 PLN02612 phytoene desaturase 100.0 2.6E-35 5.6E-40 302.5 35.9 415 26-478 91-549 (567)
19 PF01593 Amino_oxidase: Flavin 100.0 3.6E-36 7.7E-41 305.5 28.0 234 239-474 207-450 (450)
20 PRK07208 hypothetical protein; 100.0 9.9E-35 2.1E-39 296.6 33.4 403 26-476 2-460 (479)
21 TIGR02732 zeta_caro_desat caro 100.0 3.2E-33 6.9E-38 281.9 30.0 406 30-474 1-474 (474)
22 PLN02487 zeta-carotene desatur 100.0 5.4E-33 1.2E-37 281.4 31.7 413 26-477 73-553 (569)
23 TIGR03467 HpnE squalene-associ 100.0 6.2E-33 1.3E-37 279.6 32.1 396 42-475 1-419 (419)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 1.1E-31 2.5E-36 274.4 36.8 427 29-476 2-491 (492)
25 TIGR02734 crtI_fam phytoene de 100.0 1.8E-31 3.8E-36 273.9 29.3 423 31-479 1-494 (502)
26 TIGR02730 carot_isom carotene 100.0 7E-31 1.5E-35 268.0 32.4 425 29-477 1-492 (493)
27 COG3380 Predicted NAD/FAD-depe 100.0 6.5E-32 1.4E-36 235.1 18.8 324 29-477 2-331 (331)
28 KOG1276 Protoporphyrinogen oxi 100.0 5.5E-27 1.2E-31 217.3 24.8 409 26-474 9-490 (491)
29 COG1233 Phytoene dehydrogenase 99.9 1.2E-26 2.7E-31 234.6 19.6 257 27-295 2-281 (487)
30 COG2907 Predicted NAD/FAD-bind 99.9 3.2E-26 6.9E-31 206.3 17.3 286 27-337 7-310 (447)
31 KOG4254 Phytoene desaturase [C 99.9 6.8E-22 1.5E-26 184.4 21.9 238 233-479 253-548 (561)
32 COG3349 Uncharacterized conser 99.9 1.6E-22 3.5E-27 195.4 16.9 421 29-482 1-468 (485)
33 TIGR00031 UDP-GALP_mutase UDP- 99.8 4.2E-18 9E-23 164.5 18.3 229 28-297 1-249 (377)
34 PTZ00363 rab-GDP dissociation 99.7 1.8E-16 4E-21 156.9 18.6 230 25-292 1-287 (443)
35 PF13450 NAD_binding_8: NAD(P) 99.7 2.8E-17 6E-22 117.9 5.5 68 33-100 1-68 (68)
36 COG2081 Predicted flavoprotein 99.7 2.2E-15 4.7E-20 141.0 18.0 52 241-292 108-164 (408)
37 PRK13977 myosin-cross-reactive 99.7 1E-14 2.2E-19 145.7 21.1 72 26-100 20-97 (576)
38 PRK08773 2-octaprenyl-3-methyl 99.6 8.6E-13 1.9E-17 131.5 23.7 50 246-295 119-169 (392)
39 COG1635 THI4 Ribulose 1,5-bisp 99.5 2.3E-13 5E-18 116.2 13.0 68 27-104 29-96 (262)
40 PF01266 DAO: FAD dependent ox 99.5 7.2E-13 1.6E-17 130.5 18.0 44 252-296 160-204 (358)
41 TIGR01988 Ubi-OHases Ubiquinon 99.5 6.9E-12 1.5E-16 124.9 24.9 51 246-296 112-164 (385)
42 PRK09126 hypothetical protein; 99.5 3.6E-12 7.8E-17 127.2 22.7 51 246-296 116-168 (392)
43 COG0644 FixC Dehydrogenases (f 99.5 5E-12 1.1E-16 125.7 23.4 41 27-67 2-42 (396)
44 PRK07364 2-octaprenyl-6-methox 99.5 1.7E-11 3.7E-16 123.3 26.4 39 25-63 15-53 (415)
45 PRK10157 putative oxidoreducta 99.5 2.2E-12 4.7E-17 129.3 19.4 40 27-66 4-43 (428)
46 PRK05714 2-octaprenyl-3-methyl 99.5 8.1E-12 1.8E-16 125.1 23.3 53 246-298 118-171 (405)
47 PRK10015 oxidoreductase; Provi 99.5 1E-11 2.3E-16 124.3 23.4 39 27-65 4-42 (429)
48 PRK11259 solA N-methyltryptoph 99.5 2.3E-11 5.1E-16 120.7 25.3 43 252-295 162-204 (376)
49 TIGR01377 soxA_mon sarcosine o 99.5 1.8E-11 3.8E-16 121.7 24.3 42 252-294 158-199 (380)
50 PRK08849 2-octaprenyl-3-methyl 99.5 2.7E-11 6E-16 120.2 24.7 53 246-298 116-170 (384)
51 PRK08020 ubiF 2-octaprenyl-3-m 99.5 3E-11 6.5E-16 120.5 25.1 52 246-297 118-171 (391)
52 PRK08013 oxidoreductase; Provi 99.5 2.9E-11 6.4E-16 120.6 25.0 53 246-298 117-171 (400)
53 TIGR01984 UbiH 2-polyprenyl-6- 99.5 3.8E-11 8.2E-16 119.4 25.6 51 246-296 111-163 (382)
54 PRK07608 ubiquinone biosynthes 99.4 2.1E-11 4.5E-16 121.5 23.8 49 246-295 117-167 (388)
55 PRK08850 2-octaprenyl-6-methox 99.4 2.3E-11 4.9E-16 121.8 23.8 51 246-296 117-169 (405)
56 PRK07333 2-octaprenyl-6-methox 99.4 3.2E-11 7E-16 120.8 24.6 51 246-296 117-168 (403)
57 PF03486 HI0933_like: HI0933-l 99.4 3.7E-13 8.1E-18 132.0 10.1 41 253-293 123-164 (409)
58 COG0654 UbiH 2-polyprenyl-6-me 99.4 2.9E-11 6.2E-16 120.0 23.7 53 246-298 110-165 (387)
59 PRK07494 2-octaprenyl-6-methox 99.4 3E-11 6.6E-16 120.3 23.6 50 246-295 117-167 (388)
60 COG0562 Glf UDP-galactopyranos 99.4 3.6E-12 7.7E-17 115.2 14.9 227 28-297 1-243 (374)
61 PRK06847 hypothetical protein; 99.4 5.2E-11 1.1E-15 118.1 24.7 45 252-296 120-164 (375)
62 PRK05732 2-octaprenyl-6-methox 99.4 4.2E-11 9.1E-16 119.7 23.6 50 246-295 118-169 (395)
63 PRK07588 hypothetical protein; 99.4 2.7E-11 5.8E-16 120.8 20.3 53 246-298 109-161 (391)
64 TIGR02032 GG-red-SF geranylger 99.4 4.4E-11 9.5E-16 114.5 20.5 37 29-65 1-37 (295)
65 PRK11445 putative oxidoreducta 99.4 1E-10 2.3E-15 114.4 23.0 49 248-296 107-158 (351)
66 PF01946 Thi4: Thi4 family; PD 99.4 1.8E-12 3.9E-17 111.8 8.6 68 27-104 16-83 (230)
67 PRK06834 hypothetical protein; 99.4 2.3E-10 5.1E-15 116.4 24.9 50 248-297 108-158 (488)
68 TIGR01989 COQ6 Ubiquinone bios 99.3 1.9E-10 4.2E-15 116.0 23.4 53 246-298 123-186 (437)
69 PRK05868 hypothetical protein; 99.3 1.2E-10 2.6E-15 114.8 21.4 49 250-298 115-163 (372)
70 PRK06185 hypothetical protein; 99.3 1.6E-10 3.5E-15 115.9 22.0 37 26-62 4-40 (407)
71 PRK06184 hypothetical protein; 99.3 2.3E-10 4.9E-15 117.7 23.5 53 246-298 115-171 (502)
72 PRK06617 2-octaprenyl-6-methox 99.3 3.4E-10 7.3E-15 112.0 23.8 52 246-298 110-163 (374)
73 COG0579 Predicted dehydrogenas 99.3 3.8E-11 8.3E-16 116.6 15.6 43 27-69 2-46 (429)
74 PRK07190 hypothetical protein; 99.3 3.5E-10 7.6E-15 114.9 23.1 47 252-298 122-168 (487)
75 PRK08244 hypothetical protein; 99.3 2E-10 4.3E-15 117.9 21.3 45 253-297 114-161 (493)
76 COG0665 DadA Glycine/D-amino a 99.3 7.4E-10 1.6E-14 110.4 24.6 39 26-64 2-40 (387)
77 PRK07045 putative monooxygenas 99.3 7.8E-10 1.7E-14 110.1 24.6 53 246-298 112-168 (388)
78 TIGR01373 soxB sarcosine oxida 99.3 6.4E-10 1.4E-14 111.5 24.1 40 25-65 27-68 (407)
79 TIGR00292 thiazole biosynthesi 99.3 6.9E-11 1.5E-15 108.9 15.6 41 27-67 20-60 (254)
80 PRK00711 D-amino acid dehydrog 99.3 2.1E-09 4.6E-14 108.2 27.6 40 29-68 1-40 (416)
81 PRK07236 hypothetical protein; 99.3 5.8E-10 1.2E-14 110.9 23.2 45 253-297 112-156 (386)
82 PRK06753 hypothetical protein; 99.3 3.2E-10 7E-15 112.3 20.8 46 253-298 110-155 (373)
83 PRK11728 hydroxyglutarate oxid 99.3 8.2E-11 1.8E-15 117.2 16.5 50 245-295 154-204 (393)
84 TIGR02023 BchP-ChlP geranylger 99.3 2.6E-10 5.7E-15 113.3 19.8 32 29-60 1-32 (388)
85 PRK12409 D-amino acid dehydrog 99.3 9.1E-11 2E-15 117.7 16.2 40 28-67 1-40 (410)
86 PRK06183 mhpA 3-(3-hydroxyphen 99.3 5.6E-10 1.2E-14 115.7 22.3 46 253-298 128-177 (538)
87 PRK08132 FAD-dependent oxidore 99.3 8.3E-10 1.8E-14 114.7 23.5 38 26-63 21-58 (547)
88 PRK04176 ribulose-1,5-biphosph 99.3 8.7E-11 1.9E-15 108.7 14.2 41 27-67 24-64 (257)
89 PRK08243 4-hydroxybenzoate 3-m 99.3 1.1E-09 2.5E-14 109.0 22.5 35 28-62 2-36 (392)
90 PRK08163 salicylate hydroxylas 99.2 4.9E-10 1.1E-14 112.0 19.6 52 246-297 115-168 (396)
91 PRK06996 hypothetical protein; 99.2 3.8E-09 8.3E-14 105.4 25.4 48 246-293 121-172 (398)
92 PTZ00383 malate:quinone oxidor 99.2 1.7E-10 3.7E-15 116.4 15.4 41 254-295 232-273 (497)
93 PRK06126 hypothetical protein; 99.2 1.5E-09 3.2E-14 113.0 22.8 37 26-62 5-41 (545)
94 TIGR03329 Phn_aa_oxid putative 99.2 1.8E-10 3.9E-15 117.0 15.4 50 244-295 187-237 (460)
95 PF13738 Pyr_redox_3: Pyridine 99.2 1E-10 2.2E-15 105.4 11.4 42 253-294 96-137 (203)
96 PLN00093 geranylgeranyl diphos 99.2 7.6E-09 1.7E-13 103.9 25.0 37 25-61 36-72 (450)
97 PLN02172 flavin-containing mon 99.2 4.8E-10 1E-14 112.7 15.9 44 26-69 8-51 (461)
98 PLN02463 lycopene beta cyclase 99.2 6.3E-09 1.4E-13 104.0 22.6 43 252-295 127-169 (447)
99 TIGR01812 sdhA_frdA_Gneg succi 99.2 9.1E-09 2E-13 107.3 24.8 37 30-66 1-37 (566)
100 PRK01747 mnmC bifunctional tRN 99.1 4.7E-10 1E-14 119.0 14.3 51 245-295 413-463 (662)
101 PRK06481 fumarate reductase fl 99.1 1.7E-09 3.6E-14 110.9 17.8 42 26-67 59-100 (506)
102 PRK11101 glpA sn-glycerol-3-ph 99.1 2.7E-08 5.8E-13 102.9 26.7 39 27-65 5-43 (546)
103 PLN02927 antheraxanthin epoxid 99.1 5.9E-09 1.3E-13 107.7 21.6 42 256-297 209-250 (668)
104 TIGR02028 ChlP geranylgeranyl 99.1 1.6E-08 3.5E-13 100.5 24.2 36 29-64 1-36 (398)
105 PRK06452 sdhA succinate dehydr 99.1 1.9E-08 4E-13 104.4 25.4 40 27-66 4-43 (566)
106 PRK07538 hypothetical protein; 99.1 1.1E-08 2.5E-13 102.6 22.8 35 29-63 1-35 (413)
107 PRK06263 sdhA succinate dehydr 99.1 4.4E-08 9.6E-13 101.5 27.6 39 27-66 6-45 (543)
108 PF00890 FAD_binding_2: FAD bi 99.1 8.5E-10 1.8E-14 111.0 14.5 36 30-65 1-36 (417)
109 PF01494 FAD_binding_3: FAD bi 99.1 1.6E-10 3.4E-15 113.7 8.7 35 29-63 2-36 (356)
110 PRK06475 salicylate hydroxylas 99.1 7.1E-09 1.5E-13 103.6 20.5 54 246-299 113-171 (400)
111 TIGR01790 carotene-cycl lycope 99.1 1.1E-08 2.4E-13 101.9 21.7 36 30-65 1-36 (388)
112 PF05834 Lycopene_cycl: Lycope 99.1 2.8E-08 6.1E-13 98.0 24.2 50 246-295 93-142 (374)
113 PLN02661 Putative thiazole syn 99.1 1.1E-09 2.3E-14 103.7 13.2 42 27-68 91-133 (357)
114 KOG2820 FAD-dependent oxidored 99.1 3.1E-10 6.7E-15 103.5 8.5 57 241-297 154-214 (399)
115 TIGR01813 flavo_cyto_c flavocy 99.1 2.4E-09 5.1E-14 108.4 15.8 38 30-67 1-39 (439)
116 TIGR03364 HpnW_proposed FAD de 99.1 6E-10 1.3E-14 110.1 11.0 34 29-62 1-34 (365)
117 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 3.4E-08 7.5E-13 98.1 23.1 35 28-62 2-36 (390)
118 PRK08274 tricarballylate dehyd 99.1 3E-09 6.6E-14 108.4 15.8 42 26-67 2-45 (466)
119 PLN02464 glycerol-3-phosphate 99.1 5.2E-08 1.1E-12 101.9 25.2 41 26-66 69-109 (627)
120 PLN02697 lycopene epsilon cycl 99.1 2.8E-08 6.2E-13 100.9 22.0 35 26-60 106-140 (529)
121 PRK13339 malate:quinone oxidor 99.0 3.5E-09 7.6E-14 106.5 14.9 42 27-68 5-48 (497)
122 TIGR01292 TRX_reduct thioredox 99.0 3.1E-09 6.7E-14 102.0 14.0 41 253-294 71-111 (300)
123 PRK08294 phenol 2-monooxygenas 99.0 4E-08 8.7E-13 103.0 23.2 38 25-62 29-67 (634)
124 KOG2614 Kynurenine 3-monooxyge 99.0 4.1E-08 8.8E-13 92.9 20.1 34 28-61 2-35 (420)
125 PRK05257 malate:quinone oxidor 99.0 5.1E-09 1.1E-13 106.2 15.3 42 26-67 3-46 (494)
126 COG2072 TrkA Predicted flavopr 99.0 2.6E-09 5.7E-14 106.9 12.8 54 25-78 5-59 (443)
127 TIGR01320 mal_quin_oxido malat 99.0 3.4E-09 7.4E-14 107.4 13.7 39 29-67 1-41 (483)
128 PRK12266 glpD glycerol-3-phosp 99.0 4.7E-09 1E-13 107.5 14.2 43 25-67 3-45 (508)
129 PRK12845 3-ketosteroid-delta-1 99.0 2.1E-08 4.6E-13 103.5 18.7 42 26-68 14-55 (564)
130 TIGR03219 salicylate_mono sali 99.0 1.1E-08 2.4E-13 102.7 15.6 52 246-297 107-161 (414)
131 PRK07573 sdhA succinate dehydr 99.0 9.6E-09 2.1E-13 107.7 15.4 39 27-65 34-72 (640)
132 PF13454 NAD_binding_9: FAD-NA 99.0 1.1E-08 2.3E-13 87.5 13.0 48 246-293 107-155 (156)
133 TIGR01789 lycopene_cycl lycope 99.0 8.6E-08 1.9E-12 94.1 21.0 36 30-65 1-38 (370)
134 PRK09897 hypothetical protein; 99.0 1.5E-08 3.2E-13 102.9 15.7 50 244-293 111-164 (534)
135 PRK06134 putative FAD-binding 99.0 3.4E-08 7.3E-13 102.9 18.7 44 25-68 9-52 (581)
136 PRK06175 L-aspartate oxidase; 99.0 1.5E-08 3.4E-13 101.6 15.2 39 27-66 3-41 (433)
137 PRK07121 hypothetical protein; 98.9 2.3E-08 5E-13 102.5 16.7 42 26-67 18-59 (492)
138 PLN02985 squalene monooxygenas 98.9 2.3E-07 5E-12 94.9 23.8 46 17-62 32-77 (514)
139 COG0578 GlpA Glycerol-3-phosph 98.9 1.1E-07 2.3E-12 94.8 20.5 41 27-67 11-51 (532)
140 PRK13369 glycerol-3-phosphate 98.9 1.3E-08 2.9E-13 104.3 14.7 42 25-66 3-44 (502)
141 KOG1399 Flavin-containing mono 98.9 1.2E-08 2.6E-13 100.8 13.4 44 27-70 5-48 (448)
142 TIGR00275 flavoprotein, HI0933 98.9 8.5E-09 1.8E-13 102.5 12.0 36 32-67 1-36 (400)
143 PRK05976 dihydrolipoamide dehy 98.9 3.8E-08 8.3E-13 100.4 17.1 42 26-68 2-43 (472)
144 PRK12837 3-ketosteroid-delta-1 98.9 7.4E-08 1.6E-12 99.0 18.9 40 27-67 6-45 (513)
145 PRK05249 soluble pyridine nucl 98.9 4.9E-08 1.1E-12 99.5 17.2 41 27-67 4-44 (461)
146 PRK07804 L-aspartate oxidase; 98.9 3.1E-08 6.7E-13 102.3 15.6 41 26-66 14-54 (541)
147 PF00996 GDI: GDP dissociation 98.9 4.4E-08 9.6E-13 96.2 15.8 229 25-290 1-284 (438)
148 PTZ00367 squalene epoxidase; P 98.9 3.5E-07 7.6E-12 94.1 22.9 36 26-61 31-66 (567)
149 PRK12842 putative succinate de 98.9 7E-08 1.5E-12 100.6 18.0 43 26-68 7-49 (574)
150 PF00743 FMO-like: Flavin-bind 98.9 1.1E-08 2.5E-13 104.3 11.6 40 29-68 2-41 (531)
151 TIGR01424 gluta_reduc_2 glutat 98.9 6E-08 1.3E-12 98.2 16.8 40 28-68 2-41 (446)
152 PRK12839 hypothetical protein; 98.9 7.6E-08 1.6E-12 99.7 17.8 44 25-68 5-48 (572)
153 PF06100 Strep_67kDa_ant: Stre 98.9 2.7E-07 5.9E-12 90.1 20.2 70 28-100 2-77 (500)
154 PRK07803 sdhA succinate dehydr 98.9 5.2E-08 1.1E-12 102.1 16.5 39 27-65 7-45 (626)
155 PRK12844 3-ketosteroid-delta-1 98.9 1.4E-07 2.9E-12 97.8 19.2 41 27-67 5-45 (557)
156 PRK07843 3-ketosteroid-delta-1 98.9 1.1E-07 2.5E-12 98.5 18.6 41 27-67 6-46 (557)
157 TIGR00551 nadB L-aspartate oxi 98.9 4.2E-08 9.1E-13 100.3 15.1 38 28-66 2-39 (488)
158 PRK12835 3-ketosteroid-delta-1 98.9 1.2E-07 2.6E-12 98.7 18.4 42 25-66 8-49 (584)
159 PRK05192 tRNA uridine 5-carbox 98.9 2.7E-08 5.8E-13 101.2 13.1 40 27-66 3-43 (618)
160 PRK15317 alkyl hydroperoxide r 98.9 3.1E-08 6.8E-13 102.0 14.0 42 253-294 280-321 (517)
161 PRK06467 dihydrolipoamide dehy 98.9 8.9E-08 1.9E-12 97.4 17.1 42 26-67 2-43 (471)
162 TIGR03140 AhpF alkyl hydropero 98.9 3.2E-08 6.9E-13 101.8 13.8 42 253-294 281-322 (515)
163 PRK05945 sdhA succinate dehydr 98.9 5.4E-08 1.2E-12 101.4 15.5 39 28-66 3-43 (575)
164 PRK12834 putative FAD-binding 98.8 1.3E-07 2.8E-12 98.1 17.6 42 26-67 2-45 (549)
165 PLN00128 Succinate dehydrogena 98.8 6.8E-08 1.5E-12 101.0 15.3 40 27-66 49-88 (635)
166 PRK06416 dihydrolipoamide dehy 98.8 1.1E-07 2.4E-12 96.9 16.2 41 27-68 3-43 (462)
167 PRK08071 L-aspartate oxidase; 98.8 5.6E-08 1.2E-12 99.6 14.1 38 28-66 3-40 (510)
168 TIGR01421 gluta_reduc_1 glutat 98.8 1.1E-07 2.3E-12 96.3 15.8 41 27-68 1-41 (450)
169 PRK08401 L-aspartate oxidase; 98.8 8.9E-08 1.9E-12 97.3 15.1 34 28-61 1-34 (466)
170 COG1249 Lpd Pyruvate/2-oxoglut 98.8 1.5E-07 3.3E-12 93.4 15.6 43 26-68 2-44 (454)
171 PRK07395 L-aspartate oxidase; 98.8 6.1E-08 1.3E-12 100.0 13.2 40 26-66 7-46 (553)
172 COG0492 TrxB Thioredoxin reduc 98.8 6E-08 1.3E-12 91.5 12.1 41 27-67 2-42 (305)
173 PRK07818 dihydrolipoamide dehy 98.8 8.6E-08 1.9E-12 97.7 14.2 40 27-67 3-42 (466)
174 TIGR03143 AhpF_homolog putativ 98.8 8.4E-08 1.8E-12 99.5 14.2 42 26-68 2-43 (555)
175 PRK06069 sdhA succinate dehydr 98.8 2.1E-07 4.6E-12 97.1 17.0 40 27-66 4-46 (577)
176 PRK06854 adenylylsulfate reduc 98.8 2.2E-07 4.8E-12 97.1 16.7 38 27-64 10-49 (608)
177 PRK09231 fumarate reductase fl 98.8 1.3E-07 2.7E-12 98.5 14.8 40 27-66 3-44 (582)
178 PRK08958 sdhA succinate dehydr 98.8 8.2E-08 1.8E-12 99.9 13.3 40 27-66 6-45 (588)
179 PTZ00139 Succinate dehydrogena 98.8 1.5E-07 3.3E-12 98.4 15.2 40 27-66 28-67 (617)
180 PLN02815 L-aspartate oxidase 98.8 1.1E-07 2.4E-12 98.5 14.0 40 26-66 27-66 (594)
181 TIGR01811 sdhA_Bsu succinate d 98.8 1.7E-07 3.6E-12 97.8 15.2 35 31-65 1-35 (603)
182 PLN02507 glutathione reductase 98.7 1E-07 2.2E-12 97.5 13.2 47 248-294 252-299 (499)
183 PRK08275 putative oxidoreducta 98.7 1.2E-07 2.6E-12 98.4 13.9 39 27-65 8-48 (554)
184 TIGR02485 CobZ_N-term precorri 98.7 1.6E-07 3.4E-12 94.8 14.3 34 33-66 1-36 (432)
185 PF12831 FAD_oxidored: FAD dep 98.7 1.5E-08 3.2E-13 101.8 6.7 38 30-67 1-38 (428)
186 TIGR01176 fum_red_Fp fumarate 98.7 2.5E-07 5.5E-12 96.1 15.6 40 28-67 3-44 (580)
187 PRK07512 L-aspartate oxidase; 98.7 1.4E-07 3.1E-12 96.8 13.5 34 27-62 8-41 (513)
188 PRK12843 putative FAD-binding 98.7 3.6E-07 7.7E-12 95.3 16.1 43 26-68 14-56 (578)
189 PRK09078 sdhA succinate dehydr 98.7 2.9E-07 6.3E-12 96.2 15.4 40 27-66 11-50 (598)
190 PRK10262 thioredoxin reductase 98.7 2.2E-07 4.7E-12 90.0 13.5 43 25-68 3-45 (321)
191 PF01134 GIDA: Glucose inhibit 98.7 4.5E-08 9.7E-13 94.4 8.2 40 253-293 110-150 (392)
192 COG2509 Uncharacterized FAD-de 98.7 5.2E-07 1.1E-11 86.4 15.1 50 245-294 178-229 (486)
193 PRK07057 sdhA succinate dehydr 98.7 4.8E-07 1E-11 94.4 15.9 40 27-66 11-50 (591)
194 PRK08626 fumarate reductase fl 98.7 2.6E-07 5.6E-12 97.3 13.4 39 27-65 4-42 (657)
195 PRK08641 sdhA succinate dehydr 98.7 7.7E-07 1.7E-11 92.8 16.8 39 28-66 3-41 (589)
196 PRK06327 dihydrolipoamide dehy 98.7 8.7E-07 1.9E-11 90.5 16.8 42 26-67 2-49 (475)
197 PTZ00306 NADH-dependent fumara 98.7 3E-07 6.5E-12 103.0 14.3 42 26-67 407-448 (1167)
198 COG0029 NadB Aspartate oxidase 98.6 1.5E-06 3.2E-11 84.4 17.0 33 30-63 9-41 (518)
199 PRK08205 sdhA succinate dehydr 98.6 1E-06 2.2E-11 92.0 16.0 38 27-65 4-41 (583)
200 KOG2404 Fumarate reductase, fl 98.6 6.8E-07 1.5E-11 81.3 12.0 39 29-67 10-48 (477)
201 PRK09077 L-aspartate oxidase; 98.6 1.2E-06 2.6E-11 90.5 15.3 39 27-66 7-45 (536)
202 TIGR02462 pyranose_ox pyranose 98.6 1.1E-06 2.3E-11 89.4 14.2 37 29-65 1-37 (544)
203 KOG2844 Dimethylglycine dehydr 98.5 5.3E-07 1.2E-11 89.7 10.9 62 233-295 173-243 (856)
204 PF00070 Pyr_redox: Pyridine n 98.5 1.1E-06 2.4E-11 65.6 9.7 35 30-64 1-35 (80)
205 PF07156 Prenylcys_lyase: Pren 98.5 1.7E-05 3.8E-10 76.8 19.9 103 193-296 76-188 (368)
206 PRK12779 putative bifunctional 98.5 1.6E-07 3.4E-12 102.2 6.4 42 27-68 305-346 (944)
207 KOG1335 Dihydrolipoamide dehyd 98.5 2.4E-06 5.2E-11 79.8 12.5 42 27-68 38-79 (506)
208 PRK07845 flavoprotein disulfid 98.5 6.2E-06 1.4E-10 84.0 16.9 39 28-67 1-39 (466)
209 TIGR03315 Se_ygfK putative sel 98.5 2.3E-07 4.9E-12 100.2 6.5 43 27-69 536-578 (1012)
210 PF06039 Mqo: Malate:quinone o 98.5 8.8E-06 1.9E-10 78.9 16.5 41 27-67 2-44 (488)
211 PLN02852 ferredoxin-NADP+ redu 98.4 3.3E-07 7.1E-12 92.2 7.0 45 25-69 23-69 (491)
212 PRK06115 dihydrolipoamide dehy 98.4 2.1E-07 4.5E-12 94.7 5.4 40 28-67 3-42 (466)
213 PRK12831 putative oxidoreducta 98.4 3.7E-07 7.9E-12 92.5 6.7 44 25-68 137-180 (464)
214 PRK06116 glutathione reductase 98.4 2.1E-07 4.5E-12 94.5 4.9 41 26-67 2-42 (450)
215 COG1148 HdrA Heterodisulfide r 98.4 1.9E-07 4E-12 89.6 4.1 43 27-69 123-165 (622)
216 PRK13800 putative oxidoreducta 98.4 5.2E-06 1.1E-10 91.0 15.6 36 27-62 12-47 (897)
217 COG3573 Predicted oxidoreducta 98.4 4.8E-06 1E-10 76.3 12.6 41 27-67 4-46 (552)
218 TIGR01350 lipoamide_DH dihydro 98.4 3.3E-07 7.2E-12 93.5 5.3 40 28-68 1-40 (461)
219 PRK07251 pyridine nucleotide-d 98.4 4E-07 8.6E-12 92.1 5.7 41 28-68 3-44 (438)
220 PRK08010 pyridine nucleotide-d 98.4 4.9E-07 1.1E-11 91.6 5.7 41 28-68 3-44 (441)
221 PRK09853 putative selenate red 98.3 5.7E-07 1.2E-11 96.7 5.9 44 26-69 537-580 (1019)
222 KOG2853 Possible oxidoreductas 98.3 0.00014 3E-09 67.2 19.9 37 26-62 84-124 (509)
223 PRK06370 mercuric reductase; V 98.3 6.1E-07 1.3E-11 91.4 5.5 42 26-68 3-44 (463)
224 TIGR02061 aprA adenosine phosp 98.3 1.3E-05 2.8E-10 83.4 15.0 33 30-62 1-37 (614)
225 PTZ00188 adrenodoxin reductase 98.3 1.2E-06 2.7E-11 86.7 7.1 44 26-69 37-81 (506)
226 COG1252 Ndh NADH dehydrogenase 98.3 1E-05 2.2E-10 78.6 13.2 36 27-62 2-39 (405)
227 COG1053 SdhA Succinate dehydro 98.3 1E-05 2.2E-10 83.0 13.9 42 26-67 4-45 (562)
228 TIGR03197 MnmC_Cterm tRNA U-34 98.3 4.9E-05 1.1E-09 75.5 18.6 52 244-295 139-190 (381)
229 PRK06292 dihydrolipoamide dehy 98.3 7.2E-07 1.6E-11 90.9 5.3 41 27-68 2-42 (460)
230 TIGR00136 gidA glucose-inhibit 98.3 1.3E-05 2.8E-10 81.8 14.0 39 29-67 1-39 (617)
231 KOG2960 Protein involved in th 98.3 2.3E-07 4.9E-12 79.2 1.1 67 28-104 76-144 (328)
232 KOG2415 Electron transfer flav 98.3 9.1E-07 2E-11 83.3 5.2 44 26-69 74-123 (621)
233 PRK12775 putative trifunctiona 98.3 1.2E-06 2.5E-11 96.5 6.4 42 27-68 429-470 (1006)
234 PRK12769 putative oxidoreducta 98.3 1.2E-06 2.6E-11 92.9 6.4 43 27-69 326-368 (654)
235 COG0493 GltD NADPH-dependent g 98.3 1.4E-06 3E-11 86.8 6.2 56 12-69 109-164 (457)
236 PRK14694 putative mercuric red 98.2 1.1E-06 2.5E-11 89.5 5.6 42 26-68 4-45 (468)
237 TIGR01316 gltA glutamate synth 98.2 1.5E-06 3.4E-11 87.8 6.3 43 26-68 131-173 (449)
238 PRK09564 coenzyme A disulfide 98.2 8.8E-06 1.9E-10 82.6 11.5 43 252-294 69-114 (444)
239 TIGR02053 MerA mercuric reduct 98.2 1.2E-06 2.6E-11 89.3 5.2 39 29-68 1-39 (463)
240 PTZ00058 glutathione reductase 98.2 1.5E-06 3.1E-11 89.6 5.6 40 27-67 47-86 (561)
241 PRK14727 putative mercuric red 98.2 1.9E-06 4E-11 88.1 6.3 43 26-68 14-56 (479)
242 KOG0399 Glutamate synthase [Am 98.2 1.7E-06 3.7E-11 90.5 5.8 45 25-69 1782-1826(2142)
243 PRK13748 putative mercuric red 98.2 1.4E-06 3.1E-11 91.1 5.4 41 27-68 97-137 (561)
244 PTZ00052 thioredoxin reductase 98.2 1.6E-06 3.5E-11 88.8 5.6 49 246-294 228-277 (499)
245 TIGR03452 mycothione_red mycot 98.2 2.5E-05 5.4E-10 79.2 14.0 37 28-67 2-38 (452)
246 PRK12778 putative bifunctional 98.2 2E-06 4.4E-11 92.7 6.4 43 26-68 429-471 (752)
247 PRK07846 mycothione reductase; 98.2 3.6E-05 7.8E-10 78.0 14.7 37 28-67 1-37 (451)
248 PRK12810 gltD glutamate syntha 98.2 2.9E-06 6.3E-11 86.4 6.7 43 26-68 141-183 (471)
249 PRK12814 putative NADPH-depend 98.1 3.2E-06 6.9E-11 89.4 6.3 42 27-68 192-233 (652)
250 PRK12809 putative oxidoreducta 98.1 3.3E-06 7.1E-11 89.2 6.3 43 27-69 309-351 (639)
251 PF04820 Trp_halogenase: Trypt 98.1 1.3E-05 2.8E-10 80.9 10.2 45 251-296 166-212 (454)
252 TIGR01318 gltD_gamma_fam gluta 98.1 3.5E-06 7.6E-11 85.5 6.2 43 27-69 140-182 (467)
253 PRK11749 dihydropyrimidine deh 98.1 3.3E-06 7.2E-11 85.8 6.0 43 26-68 138-180 (457)
254 KOG2665 Predicted FAD-dependen 98.1 1.3E-05 2.8E-10 73.0 8.9 43 25-67 45-89 (453)
255 KOG0405 Pyridine nucleotide-di 98.1 3.4E-05 7.4E-10 71.3 11.6 43 26-68 18-60 (478)
256 TIGR01423 trypano_reduc trypan 98.1 3.1E-06 6.8E-11 86.1 5.5 41 27-67 2-51 (486)
257 PRK05335 tRNA (uracil-5-)-meth 98.1 3.4E-06 7.4E-11 82.3 5.4 37 28-64 2-38 (436)
258 PRK06567 putative bifunctional 98.1 3.4E-06 7.3E-11 89.8 5.8 40 26-65 381-420 (1028)
259 PRK13512 coenzyme A disulfide 98.1 1.8E-05 3.9E-10 80.0 10.7 43 253-295 72-117 (438)
260 TIGR02352 thiamin_ThiO glycine 98.1 0.00063 1.4E-08 66.3 21.2 52 244-296 141-194 (337)
261 PRK09754 phenylpropionate diox 98.1 3.5E-05 7.5E-10 76.9 12.2 42 252-294 199-240 (396)
262 TIGR01372 soxA sarcosine oxida 98.1 4.2E-06 9E-11 92.6 5.8 43 27-69 162-204 (985)
263 PRK04965 NADH:flavorubredoxin 98.1 4E-05 8.7E-10 76.0 12.2 42 253-294 197-238 (377)
264 PTZ00153 lipoamide dehydrogena 98.0 5.9E-06 1.3E-10 86.4 6.1 40 28-67 116-156 (659)
265 PLN02546 glutathione reductase 98.0 5E-06 1.1E-10 85.7 5.2 40 28-67 79-127 (558)
266 TIGR01317 GOGAT_sm_gam glutama 98.0 8.5E-06 1.8E-10 83.1 6.6 42 27-68 142-183 (485)
267 PRK07846 mycothione reductase; 98.0 5.7E-05 1.2E-09 76.5 12.5 43 252-294 219-261 (451)
268 PRK05249 soluble pyridine nucl 98.0 5.7E-05 1.2E-09 77.1 12.6 43 252-294 229-271 (461)
269 TIGR01350 lipoamide_DH dihydro 98.0 6.1E-05 1.3E-09 76.9 12.8 43 252-294 224-268 (461)
270 PF00732 GMC_oxred_N: GMC oxid 98.0 5.1E-06 1.1E-10 79.5 4.2 34 29-62 1-35 (296)
271 COG4529 Uncharacterized protei 98.0 8.3E-05 1.8E-09 72.6 12.1 40 28-67 1-43 (474)
272 PRK12771 putative glutamate sy 98.0 1.2E-05 2.6E-10 83.9 6.8 43 26-68 135-177 (564)
273 KOG0042 Glycerol-3-phosphate d 98.0 4.2E-05 9.1E-10 74.8 9.7 41 27-67 66-106 (680)
274 PRK06416 dihydrolipoamide dehy 98.0 8.5E-05 1.9E-09 75.8 12.4 43 252-294 226-271 (462)
275 TIGR03452 mycothione_red mycot 97.9 0.00011 2.3E-09 74.7 12.6 43 252-294 222-264 (452)
276 PRK12770 putative glutamate sy 97.9 1.9E-05 4E-10 77.5 7.0 43 26-68 16-58 (352)
277 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1E-05 2.3E-10 79.5 4.9 36 30-65 2-37 (433)
278 PF07992 Pyr_redox_2: Pyridine 97.9 1.2E-05 2.6E-10 72.1 4.9 33 30-62 1-33 (201)
279 PRK07251 pyridine nucleotide-d 97.9 0.00012 2.6E-09 74.1 12.5 36 28-63 157-192 (438)
280 TIGR01421 gluta_reduc_1 glutat 97.9 0.00013 2.7E-09 74.0 12.5 36 28-63 166-201 (450)
281 PRK06116 glutathione reductase 97.9 0.00013 2.8E-09 74.2 12.5 43 252-294 221-264 (450)
282 TIGR01438 TGR thioredoxin and 97.9 1.3E-05 2.8E-10 81.8 5.1 40 28-67 2-49 (484)
283 COG3075 GlpB Anaerobic glycero 97.9 1.5E-05 3.2E-10 73.2 4.5 33 27-59 1-33 (421)
284 TIGR01424 gluta_reduc_2 glutat 97.9 0.00017 3.7E-09 73.1 12.6 43 252-294 220-262 (446)
285 KOG1298 Squalene monooxygenase 97.9 1.5E-05 3.3E-10 74.6 4.4 36 25-60 42-77 (509)
286 KOG1800 Ferredoxin/adrenodoxin 97.8 2.6E-05 5.6E-10 73.0 5.7 43 27-69 19-63 (468)
287 PRK07845 flavoprotein disulfid 97.8 0.00018 3.9E-09 73.3 12.4 43 252-294 231-273 (466)
288 PRK06912 acoL dihydrolipoamide 97.8 1.8E-05 3.9E-10 80.5 5.1 37 30-67 2-38 (458)
289 PRK13984 putative oxidoreducta 97.8 2.9E-05 6.4E-10 81.8 6.7 43 26-68 281-323 (604)
290 PRK05329 anaerobic glycerol-3- 97.8 2.1E-05 4.5E-10 78.0 5.0 35 27-61 1-35 (422)
291 PRK07818 dihydrolipoamide dehy 97.8 0.00023 5E-09 72.7 12.5 35 28-62 172-206 (466)
292 PRK02106 choline dehydrogenase 97.8 2.6E-05 5.7E-10 81.4 5.2 36 26-61 3-39 (560)
293 TIGR02053 MerA mercuric reduct 97.8 0.00029 6.3E-09 71.9 12.5 36 28-63 166-201 (463)
294 PRK05976 dihydrolipoamide dehy 97.8 0.00032 7E-09 71.7 12.7 36 28-63 180-215 (472)
295 PRK06327 dihydrolipoamide dehy 97.8 0.00028 6.1E-09 72.1 12.2 35 28-62 183-217 (475)
296 PRK06370 mercuric reductase; V 97.7 0.00035 7.7E-09 71.3 12.6 36 28-63 171-206 (463)
297 COG0446 HcaD Uncharacterized N 97.7 0.00027 6E-09 71.0 11.8 39 28-66 136-174 (415)
298 PRK06115 dihydrolipoamide dehy 97.7 0.00036 7.9E-09 71.1 12.3 36 28-63 174-209 (466)
299 PRK06912 acoL dihydrolipoamide 97.7 0.00042 9.2E-09 70.5 12.8 35 28-62 170-204 (458)
300 PRK08255 salicylyl-CoA 5-hydro 97.7 3.5E-05 7.7E-10 83.1 5.1 34 29-62 1-36 (765)
301 TIGR02374 nitri_red_nirB nitri 97.7 0.00023 5E-09 77.0 11.1 41 252-294 67-107 (785)
302 KOG1439 RAB proteins geranylge 97.7 0.00074 1.6E-08 64.0 12.7 46 26-71 2-47 (440)
303 TIGR02374 nitri_red_nirB nitri 97.7 0.00028 6E-09 76.5 11.3 41 253-293 196-236 (785)
304 PRK14989 nitrite reductase sub 97.7 0.00029 6.2E-09 76.5 11.3 41 252-294 72-112 (847)
305 PRK08010 pyridine nucleotide-d 97.7 0.00051 1.1E-08 69.7 12.5 42 252-294 212-253 (441)
306 TIGR01423 trypano_reduc trypan 97.6 0.00054 1.2E-08 69.9 12.4 43 252-294 244-287 (486)
307 PRK09564 coenzyme A disulfide 97.6 0.00052 1.1E-08 69.7 12.0 35 28-62 149-183 (444)
308 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.00056 1.2E-08 69.1 12.0 36 28-63 137-172 (427)
309 PRK06467 dihydrolipoamide dehy 97.6 0.00059 1.3E-08 69.6 12.2 36 28-63 174-209 (471)
310 PRK14727 putative mercuric red 97.6 0.00094 2E-08 68.4 13.0 43 252-295 241-283 (479)
311 PRK14989 nitrite reductase sub 97.6 0.00057 1.2E-08 74.2 11.7 42 252-293 200-243 (847)
312 COG0445 GidA Flavin-dependent 97.6 0.00022 4.7E-09 70.5 7.5 43 27-69 3-45 (621)
313 PTZ00052 thioredoxin reductase 97.6 0.00089 1.9E-08 68.8 12.4 32 28-59 182-213 (499)
314 PRK13512 coenzyme A disulfide 97.5 0.00066 1.4E-08 68.7 11.3 36 28-63 148-183 (438)
315 COG2303 BetA Choline dehydroge 97.5 7.5E-05 1.6E-09 77.1 4.4 36 25-60 4-39 (542)
316 PRK06292 dihydrolipoamide dehy 97.5 0.0013 2.9E-08 67.1 13.1 36 28-63 169-204 (460)
317 PTZ00058 glutathione reductase 97.5 0.0013 2.7E-08 68.2 12.4 35 28-62 237-271 (561)
318 PRK14694 putative mercuric red 97.5 0.0014 3E-08 67.0 12.5 42 252-294 231-272 (468)
319 TIGR01438 TGR thioredoxin and 97.5 0.0012 2.7E-08 67.4 12.1 43 252-294 233-278 (484)
320 TIGR03378 glycerol3P_GlpB glyc 97.5 0.00013 2.9E-09 71.5 4.8 50 245-294 268-321 (419)
321 PRK13748 putative mercuric red 97.5 0.0013 2.7E-08 69.1 12.5 42 252-294 323-364 (561)
322 PF13434 K_oxygenase: L-lysine 97.5 0.00029 6.2E-09 68.3 7.0 35 28-62 2-37 (341)
323 KOG2852 Possible oxidoreductas 97.4 7.6E-05 1.6E-09 67.3 2.2 42 25-66 7-54 (380)
324 TIGR01810 betA choline dehydro 97.4 0.00015 3.3E-09 75.2 4.0 32 30-61 1-33 (532)
325 PLN02785 Protein HOTHEAD 97.3 0.00024 5.2E-09 73.9 5.3 35 26-61 53-87 (587)
326 PLN02546 glutathione reductase 97.3 0.0027 5.9E-08 65.7 12.4 35 28-62 252-286 (558)
327 COG5044 MRS6 RAB proteins gera 97.3 0.0056 1.2E-07 57.6 12.9 45 27-71 5-49 (434)
328 PTZ00153 lipoamide dehydrogena 97.3 0.0027 5.9E-08 66.8 12.1 36 28-63 312-347 (659)
329 PTZ00318 NADH dehydrogenase-li 97.2 0.0026 5.6E-08 64.1 11.2 38 252-293 241-278 (424)
330 KOG3855 Monooxygenase involved 97.2 0.0078 1.7E-07 57.6 13.1 36 26-61 34-73 (481)
331 COG4716 Myosin-crossreactive a 97.2 0.00085 1.8E-08 62.9 6.7 42 28-69 22-67 (587)
332 KOG3851 Sulfide:quinone oxidor 97.2 0.00034 7.4E-09 64.1 3.9 37 25-61 36-74 (446)
333 PRK09754 phenylpropionate diox 97.2 0.00049 1.1E-08 68.7 5.1 42 252-295 71-112 (396)
334 PTZ00318 NADH dehydrogenase-li 97.1 0.00058 1.3E-08 68.8 5.4 37 25-61 7-43 (424)
335 TIGR03140 AhpF alkyl hydropero 97.1 0.0045 9.7E-08 64.0 11.6 35 27-61 351-385 (515)
336 KOG4716 Thioredoxin reductase 96.9 0.0012 2.7E-08 61.0 4.8 34 26-59 17-50 (503)
337 TIGR03862 flavo_PP4765 unchara 96.9 0.0097 2.1E-07 58.1 11.0 48 244-293 86-139 (376)
338 COG3634 AhpF Alkyl hydroperoxi 96.8 0.0007 1.5E-08 62.8 2.5 39 27-67 210-248 (520)
339 COG1206 Gid NAD(FAD)-utilizing 96.7 0.0015 3.2E-08 60.4 3.5 35 28-62 3-37 (439)
340 KOG2311 NAD/FAD-utilizing prot 96.6 0.0022 4.8E-08 62.1 4.5 56 3-64 9-65 (679)
341 PRK04965 NADH:flavorubredoxin 96.6 0.0028 6E-08 62.9 5.2 39 253-294 72-110 (377)
342 KOG0404 Thioredoxin reductase 96.4 0.0066 1.4E-07 53.0 5.4 45 25-69 5-53 (322)
343 KOG1238 Glucose dehydrogenase/ 96.4 0.0043 9.3E-08 63.1 4.7 38 25-62 54-92 (623)
344 TIGR03169 Nterm_to_SelD pyridi 96.3 0.0037 8E-08 61.7 4.2 43 248-294 199-242 (364)
345 PRK01438 murD UDP-N-acetylmura 96.3 0.0059 1.3E-07 62.7 5.7 46 13-62 5-50 (480)
346 PF13434 K_oxygenase: L-lysine 96.2 0.13 2.8E-06 50.0 14.1 42 253-294 293-340 (341)
347 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0062 1.3E-07 51.9 4.3 32 30-61 1-32 (157)
348 TIGR03169 Nterm_to_SelD pyridi 96.1 0.058 1.3E-06 53.1 11.2 30 28-57 145-180 (364)
349 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.0093 2E-07 52.1 4.7 32 30-61 1-32 (180)
350 KOG1336 Monodehydroascorbate/f 96.0 0.059 1.3E-06 52.9 10.1 45 252-296 268-314 (478)
351 PRK02705 murD UDP-N-acetylmura 95.9 0.0088 1.9E-07 61.0 4.6 34 30-63 2-35 (459)
352 PF03721 UDPG_MGDP_dh_N: UDP-g 95.9 0.0089 1.9E-07 52.4 3.8 33 29-61 1-33 (185)
353 KOG3923 D-aspartate oxidase [A 95.8 0.0074 1.6E-07 55.1 3.2 33 27-59 2-41 (342)
354 PRK05675 sdhA succinate dehydr 95.8 0.12 2.6E-06 54.2 12.5 49 245-293 131-187 (570)
355 PF13738 Pyr_redox_3: Pyridine 95.7 0.016 3.4E-07 51.8 4.8 49 13-61 152-200 (203)
356 COG1249 Lpd Pyruvate/2-oxoglut 95.6 0.018 3.9E-07 57.7 5.4 41 253-293 228-270 (454)
357 PRK06129 3-hydroxyacyl-CoA deh 95.5 0.017 3.7E-07 55.4 4.7 33 29-61 3-35 (308)
358 COG0686 Ald Alanine dehydrogen 95.5 0.019 4.1E-07 52.9 4.3 56 13-71 156-219 (371)
359 TIGR03377 glycerol3P_GlpA glyc 95.4 0.98 2.1E-05 46.9 17.6 45 251-295 140-190 (516)
360 PF02558 ApbA: Ketopantoate re 95.3 0.026 5.7E-07 47.7 4.7 31 31-61 1-31 (151)
361 PRK07819 3-hydroxybutyryl-CoA 95.3 0.024 5.3E-07 53.5 4.8 34 28-61 5-38 (286)
362 COG1251 NirB NAD(P)H-nitrite r 95.1 0.048 1E-06 56.4 6.5 41 253-293 201-241 (793)
363 PF01262 AlaDh_PNT_C: Alanine 95.1 0.036 7.9E-07 47.8 5.0 34 27-60 19-52 (168)
364 PRK07066 3-hydroxybutyryl-CoA 95.0 0.035 7.6E-07 53.1 5.0 34 28-61 7-40 (321)
365 PRK14106 murD UDP-N-acetylmura 95.0 0.034 7.4E-07 56.6 5.2 34 28-61 5-38 (450)
366 PRK08293 3-hydroxybutyryl-CoA 94.9 0.035 7.6E-07 52.6 4.8 32 29-60 4-35 (287)
367 TIGR01372 soxA sarcosine oxida 94.9 0.14 3.1E-06 57.2 10.2 34 27-60 316-350 (985)
368 PRK07530 3-hydroxybutyryl-CoA 94.9 0.044 9.6E-07 52.1 5.4 33 28-60 4-36 (292)
369 COG3486 IucD Lysine/ornithine 94.8 0.39 8.4E-06 46.5 11.3 37 25-61 2-39 (436)
370 PRK09260 3-hydroxybutyryl-CoA 94.7 0.037 8.1E-07 52.5 4.5 33 29-61 2-34 (288)
371 COG1004 Ugd Predicted UDP-gluc 94.7 0.04 8.8E-07 52.9 4.4 32 29-60 1-32 (414)
372 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.062 1.3E-06 46.1 5.0 34 27-60 43-77 (168)
373 TIGR01470 cysG_Nterm siroheme 94.6 0.06 1.3E-06 48.0 5.0 33 28-60 9-41 (205)
374 KOG4405 GDP dissociation inhib 94.6 0.035 7.5E-07 53.1 3.6 48 26-73 6-53 (547)
375 PF13241 NAD_binding_7: Putati 94.6 0.043 9.4E-07 42.9 3.7 34 27-60 6-39 (103)
376 COG0569 TrkA K+ transport syst 94.5 0.05 1.1E-06 49.3 4.6 33 29-61 1-33 (225)
377 PRK05708 2-dehydropantoate 2-r 94.5 0.058 1.2E-06 51.6 5.2 33 28-60 2-34 (305)
378 PRK06249 2-dehydropantoate 2-r 94.5 0.064 1.4E-06 51.6 5.6 35 27-61 4-38 (313)
379 PRK08229 2-dehydropantoate 2-r 94.4 0.057 1.2E-06 52.7 5.0 33 28-60 2-34 (341)
380 PLN02545 3-hydroxybutyryl-CoA 94.4 0.068 1.5E-06 50.9 5.3 35 27-61 3-37 (295)
381 PRK06130 3-hydroxybutyryl-CoA 94.3 0.066 1.4E-06 51.5 5.1 35 27-61 3-37 (311)
382 KOG2304 3-hydroxyacyl-CoA dehy 94.2 0.052 1.1E-06 47.6 3.7 37 25-61 8-44 (298)
383 PRK10262 thioredoxin reductase 94.1 0.087 1.9E-06 50.9 5.5 35 28-62 146-180 (321)
384 PRK06035 3-hydroxyacyl-CoA deh 94.0 0.065 1.4E-06 50.9 4.4 33 29-61 4-36 (291)
385 PLN02507 glutathione reductase 94.0 0.081 1.8E-06 54.4 5.4 37 28-64 203-239 (499)
386 PRK04148 hypothetical protein; 94.0 0.067 1.4E-06 43.6 3.7 35 27-62 16-50 (134)
387 PF01488 Shikimate_DH: Shikima 93.9 0.13 2.8E-06 42.5 5.4 34 27-60 11-45 (135)
388 TIGR01316 gltA glutamate synth 93.9 0.089 1.9E-06 53.4 5.3 35 27-61 271-305 (449)
389 PRK06522 2-dehydropantoate 2-r 93.9 0.081 1.8E-06 50.7 4.8 31 30-60 2-32 (304)
390 PRK05808 3-hydroxybutyryl-CoA 93.9 0.08 1.7E-06 50.1 4.7 33 29-61 4-36 (282)
391 PRK15317 alkyl hydroperoxide r 93.9 0.089 1.9E-06 54.5 5.4 36 27-62 350-385 (517)
392 TIGR03143 AhpF_homolog putativ 93.8 0.089 1.9E-06 55.0 5.3 37 27-63 142-178 (555)
393 PRK12921 2-dehydropantoate 2-r 93.7 0.091 2E-06 50.3 4.8 31 29-59 1-31 (305)
394 TIGR01763 MalateDH_bact malate 93.6 0.11 2.5E-06 49.5 5.3 33 29-61 2-35 (305)
395 KOG2755 Oxidoreductase [Genera 93.6 0.042 9.1E-07 49.4 2.1 32 31-62 2-35 (334)
396 PRK14618 NAD(P)H-dependent gly 93.6 0.11 2.5E-06 50.3 5.3 33 28-60 4-36 (328)
397 PRK12831 putative oxidoreducta 93.6 0.11 2.4E-06 53.0 5.3 35 27-61 280-314 (464)
398 PRK11064 wecC UDP-N-acetyl-D-m 93.6 0.086 1.9E-06 52.7 4.4 34 28-61 3-36 (415)
399 cd05292 LDH_2 A subgroup of L- 93.6 0.11 2.3E-06 49.8 4.9 33 29-61 1-35 (308)
400 PRK07531 bifunctional 3-hydrox 93.5 0.1 2.3E-06 53.5 5.0 34 27-60 3-36 (495)
401 TIGR00518 alaDH alanine dehydr 93.4 0.12 2.5E-06 50.9 5.1 34 27-60 166-199 (370)
402 PRK14619 NAD(P)H-dependent gly 93.4 0.13 2.9E-06 49.2 5.4 35 27-61 3-37 (308)
403 PRK12770 putative glutamate sy 93.4 0.12 2.7E-06 50.5 5.2 34 28-61 172-206 (352)
404 PRK06718 precorrin-2 dehydroge 93.4 0.14 3.1E-06 45.5 5.1 34 27-60 9-42 (202)
405 PF03446 NAD_binding_2: NAD bi 93.3 0.13 2.8E-06 44.1 4.7 33 28-60 1-33 (163)
406 PRK04690 murD UDP-N-acetylmura 93.2 0.11 2.5E-06 52.9 4.8 34 28-61 8-41 (468)
407 TIGR01292 TRX_reduct thioredox 93.2 0.14 3E-06 48.8 5.3 35 27-61 140-174 (300)
408 COG0771 MurD UDP-N-acetylmuram 93.2 0.11 2.3E-06 51.8 4.3 36 28-63 7-42 (448)
409 PRK06719 precorrin-2 dehydroge 93.1 0.17 3.6E-06 43.0 4.9 32 27-58 12-43 (157)
410 PRK00094 gpsA NAD(P)H-dependen 93.1 0.14 3E-06 49.6 5.0 32 29-60 2-33 (325)
411 PRK01710 murD UDP-N-acetylmura 93.1 0.13 2.8E-06 52.5 4.9 34 28-61 14-47 (458)
412 TIGR03026 NDP-sugDHase nucleot 93.1 0.1 2.3E-06 52.2 4.2 32 30-61 2-33 (411)
413 TIGR02354 thiF_fam2 thiamine b 92.9 0.16 3.5E-06 45.1 4.7 33 28-60 21-54 (200)
414 PRK04308 murD UDP-N-acetylmura 92.8 0.18 3.8E-06 51.3 5.4 35 28-62 5-39 (445)
415 COG3634 AhpF Alkyl hydroperoxi 92.7 0.1 2.2E-06 49.0 3.1 41 18-59 345-385 (520)
416 PRK03369 murD UDP-N-acetylmura 92.6 0.17 3.6E-06 52.0 5.0 33 28-60 12-44 (488)
417 PRK08268 3-hydroxy-acyl-CoA de 92.6 0.18 4E-06 51.7 5.3 35 27-61 6-40 (507)
418 PRK09424 pntA NAD(P) transhydr 92.6 0.18 3.9E-06 51.3 5.1 35 27-61 164-198 (509)
419 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.5 0.18 3.9E-06 51.6 5.0 33 28-60 5-37 (503)
420 PLN02353 probable UDP-glucose 92.4 0.17 3.8E-06 51.2 4.7 32 29-60 2-35 (473)
421 PRK14620 NAD(P)H-dependent gly 92.4 0.2 4.2E-06 48.6 4.9 31 30-60 2-32 (326)
422 PRK02472 murD UDP-N-acetylmura 92.3 0.19 4.1E-06 51.1 4.9 34 28-61 5-38 (447)
423 COG1748 LYS9 Saccharopine dehy 92.1 0.21 4.6E-06 48.7 4.7 33 28-60 1-34 (389)
424 PF00899 ThiF: ThiF family; I 92.1 0.18 3.9E-06 41.6 3.7 32 28-59 2-34 (135)
425 TIGR03378 glycerol3P_GlpB glyc 92.1 0.42 9.2E-06 47.3 6.8 33 29-61 1-33 (419)
426 PRK06223 malate dehydrogenase; 92.0 0.25 5.3E-06 47.4 5.1 34 28-61 2-36 (307)
427 cd05191 NAD_bind_amino_acid_DH 92.0 0.36 7.8E-06 36.2 5.0 33 27-59 22-55 (86)
428 TIGR01816 sdhA_forward succina 92.0 2 4.2E-05 45.1 12.0 49 245-293 124-179 (565)
429 cd01075 NAD_bind_Leu_Phe_Val_D 91.9 0.29 6.3E-06 43.5 5.1 34 27-60 27-60 (200)
430 PTZ00082 L-lactate dehydrogena 91.8 0.3 6.6E-06 46.9 5.5 36 27-62 5-41 (321)
431 COG1252 Ndh NADH dehydrogenase 91.8 0.16 3.5E-06 49.9 3.5 39 253-295 223-262 (405)
432 PRK11749 dihydropyrimidine deh 91.8 0.26 5.6E-06 50.3 5.2 35 27-61 272-307 (457)
433 cd00401 AdoHcyase S-adenosyl-L 91.7 0.28 6E-06 48.6 5.1 35 27-61 201-235 (413)
434 PRK08306 dipicolinate synthase 91.7 0.3 6.5E-06 46.4 5.2 35 27-61 151-185 (296)
435 PRK00421 murC UDP-N-acetylmura 91.7 0.23 4.9E-06 50.7 4.7 37 26-62 5-42 (461)
436 PRK07417 arogenate dehydrogena 91.6 0.24 5.3E-06 46.7 4.6 31 30-60 2-32 (279)
437 COG1250 FadB 3-hydroxyacyl-CoA 91.5 0.25 5.3E-06 46.7 4.3 33 28-60 3-35 (307)
438 PRK11730 fadB multifunctional 91.5 0.25 5.4E-06 53.2 4.9 34 28-61 313-346 (715)
439 TIGR02437 FadB fatty oxidation 91.5 0.25 5.5E-06 53.0 4.9 35 27-61 312-346 (714)
440 PRK15057 UDP-glucose 6-dehydro 91.5 0.26 5.7E-06 48.7 4.7 31 30-61 2-32 (388)
441 PRK12778 putative bifunctional 91.4 0.29 6.3E-06 53.3 5.3 35 27-61 569-604 (752)
442 COG1893 ApbA Ketopantoate redu 91.3 0.28 6E-06 46.8 4.6 33 29-61 1-33 (307)
443 PRK11199 tyrA bifunctional cho 91.3 0.34 7.4E-06 47.8 5.3 35 26-60 96-131 (374)
444 cd05311 NAD_bind_2_malic_enz N 91.3 0.34 7.4E-06 44.0 4.9 34 27-60 24-60 (226)
445 PRK15116 sulfur acceptor prote 91.2 0.33 7.2E-06 45.0 4.8 33 27-59 29-62 (268)
446 PF00056 Ldh_1_N: lactate/mala 91.2 0.44 9.4E-06 39.7 5.1 33 29-61 1-36 (141)
447 PRK01368 murD UDP-N-acetylmura 91.2 0.26 5.6E-06 50.0 4.5 32 28-60 6-37 (454)
448 PRK12549 shikimate 5-dehydroge 91.0 0.36 7.8E-06 45.6 4.9 34 27-60 126-160 (284)
449 PRK02006 murD UDP-N-acetylmura 90.9 0.31 6.6E-06 50.3 4.8 34 28-61 7-40 (498)
450 TIGR01915 npdG NADPH-dependent 90.8 0.37 8.1E-06 43.6 4.8 30 30-59 2-32 (219)
451 cd05293 LDH_1 A subgroup of L- 90.8 0.43 9.4E-06 45.6 5.3 35 27-61 2-38 (312)
452 PRK00141 murD UDP-N-acetylmura 90.7 0.34 7.5E-06 49.5 4.9 33 28-60 15-47 (473)
453 TIGR02853 spore_dpaA dipicolin 90.7 0.41 8.9E-06 45.2 5.0 35 27-61 150-184 (287)
454 KOG1335 Dihydrolipoamide dehyd 90.7 0.15 3.2E-06 48.7 1.9 39 28-66 211-249 (506)
455 PLN02602 lactate dehydrogenase 90.6 0.51 1.1E-05 45.8 5.7 33 29-61 38-72 (350)
456 TIGR02441 fa_ox_alpha_mit fatt 90.6 0.3 6.5E-06 52.6 4.5 35 27-61 334-368 (737)
457 PRK03803 murD UDP-N-acetylmura 90.5 0.39 8.4E-06 48.9 5.1 37 25-61 3-39 (448)
458 TIGR00561 pntA NAD(P) transhyd 90.4 0.48 1E-05 48.1 5.5 35 27-61 163-197 (511)
459 PRK00066 ldh L-lactate dehydro 90.4 0.51 1.1E-05 45.3 5.4 35 27-61 5-41 (315)
460 PF02254 TrkA_N: TrkA-N domain 90.4 0.51 1.1E-05 37.6 4.7 31 31-61 1-31 (116)
461 PLN02256 arogenate dehydrogena 90.3 0.49 1.1E-05 45.1 5.2 34 27-60 35-68 (304)
462 cd05291 HicDH_like L-2-hydroxy 90.3 0.45 9.7E-06 45.6 4.9 32 30-61 2-35 (306)
463 cd01339 LDH-like_MDH L-lactate 90.2 0.35 7.7E-06 46.1 4.2 31 31-61 1-32 (300)
464 TIGR02440 FadJ fatty oxidation 90.1 0.37 7.9E-06 51.7 4.6 35 27-61 303-338 (699)
465 PTZ00117 malate dehydrogenase; 89.9 0.55 1.2E-05 45.2 5.2 35 27-61 4-39 (319)
466 PRK05476 S-adenosyl-L-homocyst 89.9 0.55 1.2E-05 46.7 5.3 35 27-61 211-245 (425)
467 PRK11559 garR tartronate semia 89.9 0.48 1E-05 45.1 4.8 33 29-61 3-35 (296)
468 PRK08644 thiamine biosynthesis 89.8 0.53 1.2E-05 42.2 4.7 32 28-59 28-60 (212)
469 PRK05562 precorrin-2 dehydroge 89.7 0.6 1.3E-05 42.0 5.0 32 27-58 24-55 (223)
470 TIGR00936 ahcY adenosylhomocys 89.6 0.55 1.2E-05 46.4 5.1 35 27-61 194-228 (406)
471 PRK15461 NADH-dependent gamma- 89.6 0.47 1E-05 45.2 4.5 33 29-61 2-34 (296)
472 TIGR01505 tartro_sem_red 2-hyd 89.6 0.4 8.7E-06 45.5 4.1 32 30-61 1-32 (291)
473 cd01078 NAD_bind_H4MPT_DH NADP 89.6 0.63 1.4E-05 41.2 5.1 34 27-60 27-61 (194)
474 PRK11154 fadJ multifunctional 89.6 0.42 9E-06 51.4 4.6 35 27-61 308-343 (708)
475 KOG2495 NADH-dehydrogenase (ub 89.6 0.13 2.8E-06 49.9 0.6 50 13-63 204-267 (491)
476 PRK00683 murD UDP-N-acetylmura 89.5 0.48 1E-05 47.6 4.7 33 29-61 4-36 (418)
477 PRK12779 putative bifunctional 89.4 0.53 1.1E-05 52.2 5.3 35 27-61 446-480 (944)
478 TIGR00507 aroE shikimate 5-deh 89.3 0.62 1.3E-05 43.7 5.0 34 27-60 116-149 (270)
479 PRK01390 murD UDP-N-acetylmura 89.2 0.47 1E-05 48.4 4.5 33 28-60 9-41 (460)
480 PLN02172 flavin-containing mon 89.1 0.47 1E-05 48.2 4.4 35 27-61 203-237 (461)
481 PRK05690 molybdopterin biosynt 89.1 0.64 1.4E-05 42.8 4.8 33 27-59 31-64 (245)
482 PTZ00142 6-phosphogluconate de 89.0 0.51 1.1E-05 47.9 4.4 33 29-61 2-34 (470)
483 cd01065 NAD_bind_Shikimate_DH 89.0 0.77 1.7E-05 38.8 5.0 34 27-60 18-52 (155)
484 PRK12548 shikimate 5-dehydroge 88.9 0.75 1.6E-05 43.6 5.3 34 27-60 125-159 (289)
485 PF00670 AdoHcyase_NAD: S-aden 88.8 0.6 1.3E-05 39.4 4.0 34 28-61 23-56 (162)
486 PRK12475 thiamine/molybdopteri 88.7 0.65 1.4E-05 45.0 4.8 32 28-59 24-56 (338)
487 PRK14573 bifunctional D-alanyl 88.7 0.54 1.2E-05 51.6 4.8 35 27-61 3-38 (809)
488 PRK07688 thiamine/molybdopteri 88.7 0.66 1.4E-05 44.9 4.8 32 28-59 24-56 (339)
489 TIGR02355 moeB molybdopterin s 88.6 0.69 1.5E-05 42.4 4.7 32 28-59 24-56 (240)
490 PRK12814 putative NADPH-depend 88.6 0.71 1.5E-05 49.3 5.4 35 27-61 322-357 (652)
491 PF13478 XdhC_C: XdhC Rossmann 88.5 0.5 1.1E-05 39.0 3.3 31 31-61 1-31 (136)
492 PRK05329 anaerobic glycerol-3- 88.5 1.4 3E-05 44.2 7.0 49 246-294 265-317 (422)
493 cd01487 E1_ThiF_like E1_ThiF_l 88.3 0.76 1.7E-05 39.8 4.5 30 30-59 1-31 (174)
494 PF10727 Rossmann-like: Rossma 88.3 0.33 7.2E-06 39.4 2.1 35 25-59 7-41 (127)
495 TIGR02356 adenyl_thiF thiazole 88.2 0.79 1.7E-05 40.8 4.7 33 27-59 20-53 (202)
496 PRK03806 murD UDP-N-acetylmura 88.2 0.7 1.5E-05 46.8 4.9 34 28-61 6-39 (438)
497 TIGR00872 gnd_rel 6-phosphoglu 88.0 0.75 1.6E-05 43.8 4.7 32 30-61 2-33 (298)
498 cd00757 ThiF_MoeB_HesA_family 88.0 0.79 1.7E-05 41.7 4.7 32 28-59 21-53 (228)
499 PRK12810 gltD glutamate syntha 88.0 0.79 1.7E-05 46.9 5.2 38 440-479 429-466 (471)
500 PRK08328 hypothetical protein; 88.0 0.79 1.7E-05 41.8 4.6 32 28-59 27-59 (231)
No 1
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=2.7e-57 Score=456.89 Aligned_cols=434 Identities=84% Similarity=1.364 Sum_probs=364.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCeeecC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~~~~ 108 (506)
++|+|||||+|||+||+.|.+.|++|+|||+++|+|||+.|....|+.+|+|++|+++...++++.++++++|++..+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 47999999999999999999999999999999999999999888899999999999864445678999999999987765
Q ss_pred CCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHc
Q 010587 109 GDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFD 188 (506)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 188 (506)
....+.+..+.. .+..+......+|......+...+.++.....+......++.|+.+++..++.
T Consensus 81 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 145 (435)
T PLN02268 81 GDNSVLYDHDLE---------------SYALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVLE 145 (435)
T ss_pred CCcccccccccc---------------ccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhh
Confidence 444443332211 23334455556777766666666766666666554445678899999887776
Q ss_pred cCchhhhhhhHHHHHHHHHHhhhhcccCCcccccccccccccccCCCccccccchHHHHHHHhccCCeeeCCeeEEEEEc
Q 010587 189 RRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRH 268 (506)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~~~ 268 (506)
..+.+...++.+++++++..++.++++.+++++|+..+.....+.+....+.+|+++++++|.++++|++|++|++|+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~ 225 (435)
T PLN02268 146 RHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRR 225 (435)
T ss_pred hCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEc
Confidence 55555566788888888888877888889999988766544444555667889999999999999999999999999999
Q ss_pred CCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCCCcceeecCCC
Q 010587 269 YIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTS 348 (506)
Q Consensus 269 ~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 348 (506)
+++|.|++.+|+++.||+||+|+|+..+....+.|.|+||+...+++.++.++...|+.+.|+++||++..+.|.+.+..
T Consensus 226 ~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~ 305 (435)
T PLN02268 226 YNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTS 305 (435)
T ss_pred CCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCC
Confidence 89999999999889999999999999987666788899999999999999999999999999999999877777766554
Q ss_pred CcceeeeccccCCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEecccCCCCCCCcccccCCCC
Q 010587 349 YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVG 428 (506)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~ 428 (506)
..+.++.+.....+..+++.++.+..+..+.+++++++++.++++|.+++|...+|+.+..++|..+|++.|+|++..++
T Consensus 306 ~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g 385 (435)
T PLN02268 306 YGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVG 385 (435)
T ss_pred CCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCC
Confidence 45555555544567778888888888888999999999999999999999987788999999999999999999988899
Q ss_pred CChHHHHHhcCCCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHH
Q 010587 429 KSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 477 (506)
Q Consensus 429 ~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l 477 (506)
+....++.+++|+++|||||++++..+.|+||||+.||.+||++|++.|
T Consensus 386 ~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 386 KPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 8888889999999999999999998888999999999999999999775
No 2
>PLN03000 amine oxidase
Probab=100.00 E-value=7.6e-47 Score=389.08 Aligned_cols=429 Identities=34% Similarity=0.519 Sum_probs=320.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCC----CcEeecCCceeeCCCCCCchHHHHHhcC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF----GFPVDLGASWLHGVCQENPLAPVISRLG 101 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (506)
....+|+|||||++||+||+.|.+.|++|+|+|+++++|||+.|.... |+.+|+|++|+++. ..+++..+++++|
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~-~~npl~~L~~qlg 260 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGT-LGNPLGIIARQLG 260 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCC-CccHHHHHHHHcC
Confidence 356999999999999999999999999999999999999999998765 46899999999875 4567888999999
Q ss_pred CCeeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCC
Q 010587 102 LPLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---EEHDEDMS 178 (506)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s 178 (506)
++.+.......+ +...+...+......+...+..++..+.++. .....+.+
T Consensus 261 l~l~~~~~~~~l--------------------------y~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~S 314 (881)
T PLN03000 261 SSLYKVRDKCPL--------------------------YRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDVS 314 (881)
T ss_pred CceeecCCCCeE--------------------------EEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCCc
Confidence 987654332221 1122233333322222233333333332221 22344667
Q ss_pred HHHHHHHHHccCchhhhhhhHHHHHHHHHHhhhhcccCCcccccccccccc--cccCCCccccccchHHHHHHHhccCCe
Q 010587 179 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDI 256 (506)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~~i 256 (506)
+.+.++.+..... .........++.+.+..+....+.....+++..+... ....+....+.+|++.|+++|++.+.|
T Consensus 315 Lg~aLe~~~~~~g-~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~I 393 (881)
T PLN03000 315 LGAALETFRQVSG-NDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPI 393 (881)
T ss_pred HHHHHHHHHHHHc-ccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCCc
Confidence 6665432211100 0000111223334333333444444555554444321 112344567889999999999999999
Q ss_pred eeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCC
Q 010587 257 RLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 336 (506)
Q Consensus 257 ~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 336 (506)
+++++|++|+..+++|+|++.++ +++||+||+|+|+..+....+.|.|+||+...+++..+.++...||++.|+++||+
T Consensus 394 ~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~ 472 (881)
T PLN03000 394 LYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWS 472 (881)
T ss_pred ccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence 99999999999999999987654 89999999999999998767899999999999999999999999999999999997
Q ss_pred CC-CcceeecCCCC---cceeeeccccCCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCC----CCCCcEEE
Q 010587 337 NV-EFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYL 408 (506)
Q Consensus 337 ~~-~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~~~ 408 (506)
.. .++|.+.++.. ....+.+..+..+..+|++++.+..+..+..++++++++.++++|.++|+. +++|+.+.
T Consensus 473 ~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~i 552 (881)
T PLN03000 473 TDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTV 552 (881)
T ss_pred CCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEE
Confidence 54 56676643321 112333444445677889999999999999999999999999999999962 35788899
Q ss_pred ecccCCCCCCCcccccCCCCCChHHHHHhcCCC--CceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHHHcCC
Q 010587 409 VSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGE 483 (506)
Q Consensus 409 ~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~~~~~ 483 (506)
+++|..++++.|+|++..+++....++.+..|+ ++|||||++++..++|||+||+.||.+||++|++.+......
T Consensus 553 vtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 553 CTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred EccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999999888899999986 599999999998888999999999999999999998886643
No 3
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1e-46 Score=387.88 Aligned_cols=425 Identities=35% Similarity=0.547 Sum_probs=318.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCC--C--cEeecCCceeeCCCCCCchHHHHHhcC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--G--FPVDLGASWLHGVCQENPLAPVISRLG 101 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (506)
...++|+|||||++||+||..|++.|++|+|+|+++++||++.|.... | ..+|+|++|+++. ..+++..+.+++|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~-~~npl~~la~~lg 236 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGI-HANPLGVLARQLS 236 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccc-ccchHHHHHHHhC
Confidence 456899999999999999999999999999999999999999998764 3 4899999999875 4567889999999
Q ss_pred CCeeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCC
Q 010587 102 LPLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---EEHDEDMS 178 (506)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s 178 (506)
+++++......+ +...+...+......+...+..++..+.++. ....+++|
T Consensus 237 l~~~~~~~~~~~--------------------------~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~S 290 (738)
T PLN02529 237 IPLHKVRDNCPL--------------------------YKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDIS 290 (738)
T ss_pred CCccccCCCceE--------------------------EeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCC
Confidence 987654322211 1222222222222222222333333332221 12456789
Q ss_pred HHHHHHHHHccCchhhhhhhHHHHHHHHHHhhhhcccCCcccccccccccc--cccCCCccccccchHHHHHHHhccCCe
Q 010587 179 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDI 256 (506)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~~i 256 (506)
+.++++........ .......+++++....+....+.+.+.+|+..+... ....+....+.+|+++|+++|++++.|
T Consensus 291 l~~~le~~~~~~~~-~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L~I 369 (738)
T PLN02529 291 LGSVLERLRQLYGV-ARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVPI 369 (738)
T ss_pred HHHHHHHHHhhhcc-CCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHhcCCE
Confidence 99988754321100 011122345665554455555666677777665432 122344567899999999999999999
Q ss_pred eeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCC
Q 010587 257 RLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 336 (506)
Q Consensus 257 ~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 336 (506)
++|++|++|+..+++|+|++. ++++.||+||+|+|+..+....+.|.|+||+...+++.++.++...|+++.|+++||+
T Consensus 370 rLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~ 448 (738)
T PLN02529 370 FYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWG 448 (738)
T ss_pred EcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcccc
Confidence 999999999999999998764 4589999999999999998767889999999999999999999999999999999997
Q ss_pred CC-CcceeecCCC---CcceeeeccccCCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCC----CCCCcEEE
Q 010587 337 NV-EFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYL 408 (506)
Q Consensus 337 ~~-~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~~~ 408 (506)
+. ...|.+.... .....+.+.....+..+++.++.+..+..+..++++++++.++++|.++|+. +++|..+.
T Consensus 449 ~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v 528 (738)
T PLN02529 449 EELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTI 528 (738)
T ss_pred CCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEE
Confidence 53 4556553221 1112222333334556888999998888899999999999999999999962 34678889
Q ss_pred ecccCCCCCCCcccccCCCCCChHHHHHhcCCC-CceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHH
Q 010587 409 VSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 479 (506)
Q Consensus 409 ~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~ 479 (506)
.++|..++++.|+|++..++.....+..+..|. ++|||||++++..++|+||||+.||.+||++|++.+..
T Consensus 529 ~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 529 CTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred EccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999888777665566777774 89999999999988999999999999999999988755
No 4
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=6e-46 Score=383.40 Aligned_cols=429 Identities=33% Similarity=0.515 Sum_probs=319.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCc----EeecCCceeeCCCCCCchHHHHHhcC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGF----PVDLGASWLHGVCQENPLAPVISRLG 101 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~----~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (506)
.+..+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....|. .+|+|++++++. ..+++..+++++|
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~-~~npl~~l~~~lg 314 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGI-NGNPLGVLARQLG 314 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCC-CccHHHHHHHHcC
Confidence 45689999999999999999999999999999999999999999887653 689999999875 3567889999999
Q ss_pred CCeeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhh-----cCCCC
Q 010587 102 LPLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE-----EHDED 176 (506)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 176 (506)
++.........+++ ..+..............+..++....+... ....+
T Consensus 315 l~~~~~~~~~~~~~--------------------------~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D 368 (808)
T PLN02328 315 LPLHKVRDICPLYL--------------------------PDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVD 368 (808)
T ss_pred CceEecCCCceEEe--------------------------CCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccC
Confidence 98665432222211 222222222222222333444443332221 12346
Q ss_pred CCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhhhhcccCCcccccccccccc--cccCCCccccccchHHHHHHHhccC
Q 010587 177 MSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGL 254 (506)
Q Consensus 177 ~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~ 254 (506)
.|+.++++.+...... ........++++.+..+....+.....+++..+... ....+....+.+|++.|+++|++.+
T Consensus 369 ~SLg~~le~~~~~~~~-~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L 447 (808)
T PLN02328 369 VNLGTALEAFRHVYKV-AEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDL 447 (808)
T ss_pred cCHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhC
Confidence 7888887644211100 000111234444444344444455555665444321 1123446678899999999999999
Q ss_pred CeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCC
Q 010587 255 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 334 (506)
Q Consensus 255 ~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~ 334 (506)
.|++|++|++|...+++|.| +.+|++++||+||+|+|+..+....+.|.|+||+...+++.++.++...||.+.|+.+|
T Consensus 448 ~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~F 526 (808)
T PLN02328 448 PIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNF 526 (808)
T ss_pred CcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 99999999999999888887 45777899999999999999876667899999999999999999999999999999999
Q ss_pred CCCC-CcceeecCCCCc---ceeeeccccCCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCC----CCCCcE
Q 010587 335 WPNV-EFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQ 406 (506)
Q Consensus 335 ~~~~-~~~g~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~ 406 (506)
|+.. ...|.+..+... ...+.++....+..+|+.++.+..+..+..++++++++.++++|.++|+. ..+|..
T Consensus 527 W~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~ 606 (808)
T PLN02328 527 WGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQ 606 (808)
T ss_pred ccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcce
Confidence 9753 455665433211 12333433345678899999999999999999999999999999999862 357888
Q ss_pred EEecccCCCCCCCcccccCCCCCChHHHHHhcCCC--CceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHHHcCC
Q 010587 407 YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGE 483 (506)
Q Consensus 407 ~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~~~~~ 483 (506)
..+++|..+++++|+|++..+++....++.+..|+ ++|||||++++..++|||+||+.||.++|++|++.++.....
T Consensus 607 ~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~~ 685 (808)
T PLN02328 607 AVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSLC 685 (808)
T ss_pred EEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999988998777788888885 699999999998788999999999999999999998887543
No 5
>PLN02676 polyamine oxidase
Probab=100.00 E-value=4.8e-45 Score=367.58 Aligned_cols=422 Identities=30% Similarity=0.485 Sum_probs=303.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCC--CCCCchHHHHHhcCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV--CQENPLAPVISRLGL 102 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~l~~~lgl 102 (506)
..++||+|||||++||+||++|++.|. +|+|+|+++++||++.+....|+.+|.|++|+++. ...+++.++++++|+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~ 103 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKL 103 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCC
Confidence 457899999999999999999999998 69999999999999999988999999999999863 346788999999999
Q ss_pred CeeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh----hcCCCCCC
Q 010587 103 PLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR----EEHDEDMS 178 (506)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s 178 (506)
+......... ....+...+...+......+.+.+..+......+. ....++.+
T Consensus 104 ~~~~~~~~~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (487)
T PLN02676 104 RTFYSDFDNL-----------------------SSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDIS 160 (487)
T ss_pred ceeecCcccc-----------------------ceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc
Confidence 8664322110 00011112222233333333333333333222222 12234555
Q ss_pred HHHH--HHHHHccCchhhhhhhHHHHHHHHHHhhhhcccCCccccccccccccccc--CCC-cccc--ccchHHHHHHHh
Q 010587 179 IQRA--ISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELL--PGG-HGLM--VRGYLPVINTLA 251 (506)
Q Consensus 179 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~-~~~~--~~G~~~l~~~l~ 251 (506)
+.+. +..... ..........+ .. ...++.++...|+..+...... .++ ...+ .+|+++|++.|.
T Consensus 161 ~~~~~~~~~~~~-------~~~~~~~~~~~-~~-~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La 231 (487)
T PLN02676 161 ILTAQRLFGQVP-------KTPLEMVIDYY-NY-DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLA 231 (487)
T ss_pred HHHHHHHHhhCC-------CCHHHHHHHHH-hc-cceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHH
Confidence 5332 221110 00011111111 10 1225666677776554311111 122 2233 579999999998
Q ss_pred cc-----------CCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCC
Q 010587 252 KG-----------LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV 320 (506)
Q Consensus 252 ~g-----------~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 320 (506)
+. .+|++|++|++|+..+++|+|++.+|++++||+||+|+|+..+....+.|.|+||+...+++..+.+
T Consensus 232 ~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~ 311 (487)
T PLN02676 232 EQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDM 311 (487)
T ss_pred hhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCc
Confidence 63 3699999999999999999999999989999999999999998865689999999999999999999
Q ss_pred ccccEEEEEeCCCCCCCCC-cceeecCCCC--cceeeecc-ccCCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHH
Q 010587 321 GIENKIIMHFDKVFWPNVE-FLGVVSDTSY--GCSYFLNL-HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKK 396 (506)
Q Consensus 321 ~~~~~v~~~~~~~~~~~~~-~~g~~~~~~~--~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~ 396 (506)
+...|+++.|+++||++.. ....+..... ....+... ...++..+++.+..+..+..+..+++++..+.++++|.+
T Consensus 312 g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~ 391 (487)
T PLN02676 312 AVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRK 391 (487)
T ss_pred eeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999998631 1111111110 00111111 112345577777778778888899999999999999999
Q ss_pred HCC-CCCCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHH
Q 010587 397 ILP-DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 475 (506)
Q Consensus 397 ~~p-~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~ 475 (506)
+|+ ....|+.+..++|..+|+..|+|+...+|......+.+++|+++|||||++++..+.||||||+.||.+||++|++
T Consensus 392 ~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~ 471 (487)
T PLN02676 392 MFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLE 471 (487)
T ss_pred HhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHH
Confidence 996 4567888999999999999999998889988888889999999999999999988889999999999999999998
Q ss_pred HHHH
Q 010587 476 RVLE 479 (506)
Q Consensus 476 ~l~~ 479 (506)
.+..
T Consensus 472 ~l~~ 475 (487)
T PLN02676 472 CIKK 475 (487)
T ss_pred Hhcc
Confidence 8754
No 6
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-46 Score=369.38 Aligned_cols=434 Identities=45% Similarity=0.686 Sum_probs=325.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcE-eecCCceeeCCCCCCchHHHHHhcCCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLP 103 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lgl~ 103 (506)
..++++|||||||+|||+||..|.+.|++|+|||+++|+|||+.|....+.. +|+|++++++. ..+++..+.+++|++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~-~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGV-YNNPLALLSKQLGLE 90 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCc-CccHHHHHHHHhCcc
Confidence 3567899999999999999999999999999999999999999998887665 99999999876 345899999999999
Q ss_pred eeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 010587 104 LYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAI 183 (506)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 183 (506)
..++......+...+.. .+..++.........+..........+...... ....++.+.+
T Consensus 91 ~~~~~~~~~l~~~~~~~---------------~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~-----i~~~~~~~~~ 150 (501)
T KOG0029|consen 91 LYKVRDTCPLFNENGGE---------------SDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIG-----ISDDSFGEAL 150 (501)
T ss_pred cceecccccccccCCcc---------------cccccccchhhhhHHHHHHHhhhhhhhhhcccc-----cccccHHHHH
Confidence 88877666555444322 111111111111111111111111110000000 0011222222
Q ss_pred HHHHc------cCchhhhhhhHHHHHHHHHHhhhhcccCCcccccccccccccccCC--CccccccchHHHHHHHhccCC
Q 010587 184 SIVFD------RRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGLD 255 (506)
Q Consensus 184 ~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~g~~ 255 (506)
..... ........+.....+.+.+..+...........+...+.....+.. .+..+.+|+..+...+++|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~ 230 (501)
T KOG0029|consen 151 EAFLSASRLMKTLLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLD 230 (501)
T ss_pred HhHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcc
Confidence 11111 1111122234444555666655555555555555444443322222 356889999999999999999
Q ss_pred eeeCCeeEEEEEcCCc-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCC
Q 010587 256 IRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 334 (506)
Q Consensus 256 i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~ 334 (506)
|++++.|.+|...++. +.+++.++..+.+|+||+++|+..+..-.+.|.|+||.+..+++.++..+...||.+.|+..|
T Consensus 231 I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~f 310 (501)
T KOG0029|consen 231 IHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVF 310 (501)
T ss_pred eeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEecccc
Confidence 9999999999998776 456666666699999999999999987779999999999999999999999999999999999
Q ss_pred C-CCCCcceeecCCCCcce--eeeccccCCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCC--CCCCCcEEEe
Q 010587 335 W-PNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLV 409 (506)
Q Consensus 335 ~-~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p--~~~~~~~~~~ 409 (506)
| ++....|........+. .++++.+..++..++.+..+.-+..+..++++++++.+...|+++|+ ...+|+.+.+
T Consensus 311 W~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~v 390 (501)
T KOG0029|consen 311 WDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALV 390 (501)
T ss_pred CCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceee
Confidence 9 56677787766654444 55666666777788888888888889999999999999999999999 6788999999
Q ss_pred cccCCCCCCCcccccCCCCCChHHHHHhcCCCCc-eEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHH
Q 010587 410 SHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 479 (506)
Q Consensus 410 ~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~-l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~ 479 (506)
.+|..++...|+|++..++...+.++.+..|+.| +||||++++..+.++|+||+.||.++|..|+..+..
T Consensus 391 t~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 391 TRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred eeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999998888888889999999998 999999999999999999999999999999999994
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=4e-44 Score=362.84 Aligned_cols=431 Identities=31% Similarity=0.430 Sum_probs=306.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC-----CcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhc
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (506)
.+++||+|||||++||+||++|++.| ++|+|||+++++||+++|....|+.+|.|++++++.. .+++.++++++
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~-~~~~~~l~~~~ 81 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIG-GSPVYKIAQEA 81 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCC-CCHHHHHHHHh
Confidence 45689999999999999999999887 8999999999999999999999999999999999763 67899999999
Q ss_pred CCCeeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh----------
Q 010587 101 GLPLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---------- 170 (506)
Q Consensus 101 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 170 (506)
|+......... ...-. ....+....+..++......+.+.+..++..+....
T Consensus 82 g~~~~~~~~~~---~~~~~---------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 143 (539)
T PLN02568 82 GSLESDEPWEC---MDGFP---------------DRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVD 143 (539)
T ss_pred CCccccCccee---ccccc---------------ccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 99533211000 00000 012234445556666666666666666655443110
Q ss_pred -----h------cCCCCCCHHHHHHHHHccC------chh-------hhhhhHHHHHHHHHHhhhhcccCCccc---ccc
Q 010587 171 -----E------EHDEDMSIQRAISIVFDRR------PEL-------RLEGLAHKVLQWYLCRMEGWFAADAET---ISL 223 (506)
Q Consensus 171 -----~------~~~~~~s~~~~~~~~~~~~------~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~ 223 (506)
. ....+.|+.+++++.++.. +.+ ..+.....++..+.. +... ...+.. +++
T Consensus 144 ~~~~~~~~~~~~~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~e~~-~~~~~~ls~ls~ 221 (539)
T PLN02568 144 FVKLAAKAARVCESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHEN-TQRT-YTSADDLSTLDL 221 (539)
T ss_pred ccccchhccchhccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHH-hhcc-ccccccHhhccc
Confidence 0 0112347777776533210 000 000011111111111 1111 122222 222
Q ss_pred cccccccccCCCccccccchHHHHHHHhccC---CeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCc
Q 010587 224 KSWDKEELLPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKART 300 (506)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~ 300 (506)
..........+....+.+|++.|+++|.+.+ +|++|++|++|+..+++|+|++.+|+++.||+||+|+|+..+....
T Consensus 222 ~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~ 301 (539)
T PLN02568 222 AAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGI 301 (539)
T ss_pred cccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhcc
Confidence 2111111234456678999999999998866 4999999999999999999999999899999999999999987532
Q ss_pred ----ccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCC------CcceeecCCCC------cceeee-----cccc
Q 010587 301 ----IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV------EFLGVVSDTSY------GCSYFL-----NLHK 359 (506)
Q Consensus 301 ----~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~g~~~~~~~------~~~~~~-----~~~~ 359 (506)
+.|.|+||+...+++..+.++...|+++.|+++||... .....+..... ...++. ....
T Consensus 302 ~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (539)
T PLN02568 302 GEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI 381 (539)
T ss_pred ccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc
Confidence 46899999999999999999999999999999998642 11122211110 001111 1111
Q ss_pred CCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCCC-----------------------CCCcEEEecccCCCC
Q 010587 360 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA-----------------------SSPIQYLVSHWGTDA 416 (506)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~-----------------------~~~~~~~~~~w~~~~ 416 (506)
..+..+|+.++.+..+..++.++++++++.+++.|.++|+.- ..|+.+..++|..++
T Consensus 382 ~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp 461 (539)
T PLN02568 382 HKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDP 461 (539)
T ss_pred CCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCC
Confidence 236778899999999999999999999999999999999631 247788899999999
Q ss_pred CCCcccccCCCCCChHHHHHhcCCCC-------------ceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHH
Q 010587 417 NSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 477 (506)
Q Consensus 417 ~~~g~~~~~~~~~~~~~~~~~~~p~~-------------~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l 477 (506)
++.|+|++..++.....+..++.|++ +|+|||++++..+.++|+||+.||.++|++|++..
T Consensus 462 ~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 462 LFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred ccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 99999998889998877888888875 69999999999999999999999999999998764
No 8
>PLN02976 amine oxidase
Probab=100.00 E-value=4.5e-44 Score=376.63 Aligned_cols=428 Identities=37% Similarity=0.641 Sum_probs=322.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecC-CCcEeecCCceeeCCCC-------CCchHHHHH
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQ-------ENPLAPVIS 98 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~-------~~~~~~l~~ 98 (506)
..++|+|||||++|++||+.|++.|++|+|||+++++||++.+... .|+++|.|++++++... .+++..+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ 771 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA 771 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence 4689999999999999999999999999999999999999999764 58899999999987532 134455789
Q ss_pred hcCCCeeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhh---cCCC
Q 010587 99 RLGLPLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDE 175 (506)
Q Consensus 99 ~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 175 (506)
++|+........... +....+..++......+...+..++..+..... ....
T Consensus 772 qlGl~l~~~~~~~~~-------------------------yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~ 826 (1713)
T PLN02976 772 QLGLELTVLNSDCPL-------------------------YDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAM 826 (1713)
T ss_pred hcCCccccccCCCce-------------------------eEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999986443321110 112344556666666666666666655543211 2233
Q ss_pred CCCHHHHHHHHHccCc------h-------------hh-------------------hhhhHHHHHHHHHHhhhhcccCC
Q 010587 176 DMSIQRAISIVFDRRP------E-------------LR-------------------LEGLAHKVLQWYLCRMEGWFAAD 217 (506)
Q Consensus 176 ~~s~~~~~~~~~~~~~------~-------------l~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 217 (506)
++++.++++..+.... . +. .......++.+++......++.+
T Consensus 827 d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~ 906 (1713)
T PLN02976 827 KMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAAL 906 (1713)
T ss_pred CCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCC
Confidence 6677777764221100 0 00 00011112222222222223566
Q ss_pred ccccccccccccc---ccCCCccccccchHHHHHHHhccCCeeeCCeeEEEEEc----------CCcEEEEEcCCcEEEc
Q 010587 218 AETISLKSWDKEE---LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRH----------YIGVKVTVEGGKTFVA 284 (506)
Q Consensus 218 ~~~~s~~~~~~~~---~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~~~----------~~~v~V~~~~G~~i~a 284 (506)
+..+|+..+.... .+.+....+.+||+.|+++|++++.|++|++|++|... +++|.|++.+|++++|
T Consensus 907 L~eVSl~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftA 986 (1713)
T PLN02976 907 LKEVSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLG 986 (1713)
T ss_pred HHHhhhhhhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEe
Confidence 7777776554211 12444567899999999999999999999999999984 4578999999989999
Q ss_pred CEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCC-CcceeecCC---CCcceeeeccccC
Q 010587 285 DAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDT---SYGCSYFLNLHKA 360 (506)
Q Consensus 285 d~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~---~~~~~~~~~~~~~ 360 (506)
|+||+|+|+..+....+.|.|+||+....++..+.++...|+++.|+.+||+.. .++|..... ...+..+++...+
T Consensus 987 DaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~p 1066 (1713)
T PLN02976 987 DAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKT 1066 (1713)
T ss_pred ceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCC
Confidence 999999999998765578999999999999999999999999999999999863 455644321 1122233344334
Q ss_pred CCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCC--CCCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhc
Q 010587 361 TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR 438 (506)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~ 438 (506)
.+..+|+.++.+..+..+..++++++++.+++.|.++||. .+.|..+.+++|..+|++.|+|++..+|.....+..+.
T Consensus 1067 sG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LA 1146 (1713)
T PLN02976 1067 VGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILG 1146 (1713)
T ss_pred CCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHh
Confidence 5667888888888888888999999999999999999985 35788999999999999999999888998887888899
Q ss_pred CCCCc-eEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHH
Q 010587 439 IPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 479 (506)
Q Consensus 439 ~p~~~-l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~ 479 (506)
.|++| |||||++++..++|||+||+.||.+||++|+..+..
T Consensus 1147 ePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1147 RPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 99876 999999999988999999999999999999988765
No 9
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-42 Score=324.18 Aligned_cols=414 Identities=25% Similarity=0.351 Sum_probs=287.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~ 105 (506)
.+..||+|||||++||+||++|.+.|++|+|+|+++++|||+.+.+..|...|.|++++.+ .++.+..+++++|++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p--~~~~~l~~~k~~gv~~~ 82 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP--THDALLAYAKEFGVPLE 82 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc--cchhhhhhHHhcCCCCC
Confidence 3679999999999999999999999999999999999999999988888899999999875 56778999999999865
Q ss_pred ecCC--CCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHH--HHHHHHHHHHHHHHHHHhh------cCCC
Q 010587 106 RTSG--DNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELV--TKVGEAFESILKETDKVRE------EHDE 175 (506)
Q Consensus 106 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~ 175 (506)
++.. .+...+.+... .+ +........ ......+.........+.. ....
T Consensus 83 ~fi~~g~~~~~~~~~~~---------------~~------p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~ 141 (450)
T COG1231 83 PFIRDGDNVIGYVGSSK---------------ST------PKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELD 141 (450)
T ss_pred ceeccCccccccccccc---------------cc------chhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhh
Confidence 4332 33333332211 00 000000000 0000000000000000000 0000
Q ss_pred CCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhhhhccc-CCcccccc-cccc---------c--ccccCCCccccccc
Q 010587 176 DMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFA-ADAETISL-KSWD---------K--EELLPGGHGLMVRG 242 (506)
Q Consensus 176 ~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~-~~~~---------~--~~~~~~~~~~~~~G 242 (506)
..++.+| . . -...++....- ....++ .+..+.+. .... . ............||
T Consensus 142 ~~~~~~W-~---~----~~~~~~~~~~~------a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GG 207 (450)
T COG1231 142 LESLAAW-K---T----SSLRGLSRDPG------ARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGG 207 (450)
T ss_pred hHHHHhh-h---h----ccccccccCcc------ceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCcc
Confidence 0111111 0 0 00000000000 000000 11111110 0000 0 00011112234499
Q ss_pred hHHHHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCC
Q 010587 243 YLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV 320 (506)
Q Consensus 243 ~~~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 320 (506)
|+.|.+++++ |-.|.++++|.+|.+.+++|+|++.+..+.++|.||+|+|+..+. .+.|.|.+|+.+.+++..++|
T Consensus 208 md~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~~~y 285 (450)
T COG1231 208 MDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKGVPY 285 (450)
T ss_pred HHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcCcCc
Confidence 9999999987 458999999999999999999999994489999999999999987 568899999999999999999
Q ss_pred ccccEEEEEeCCCCCCCCC-cceeecCCCC-cceeeeccccCCCceEEEE-EeccchhHHhhcCCHHHHHHHHHHHHHHH
Q 010587 321 GIENKIIMHFDKVFWPNVE-FLGVVSDTSY-GCSYFLNLHKATGHCVLVY-MPAGQLARDIEKMSDEAAANFAFTQLKKI 397 (506)
Q Consensus 321 ~~~~~v~~~~~~~~~~~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~e~~~~~~~~L~~~ 397 (506)
...+|+.+.|+++||++.+ +.|....+.. ...++++.....|..++.. +..+..+..|..+++++..+.++..+.++
T Consensus 286 ~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~ 365 (450)
T COG1231 286 GSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKL 365 (450)
T ss_pred chheeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhh
Confidence 9999999999999999887 5555444433 2233333333466777765 66688888899999999999999999999
Q ss_pred CC-CCCCCcEE-EecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHH
Q 010587 398 LP-DASSPIQY-LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 475 (506)
Q Consensus 398 ~p-~~~~~~~~-~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~ 475 (506)
|| ...++.+. ...+|..++++.|+++...+++..+.++.+..|.++||+||+..+..++||+|||+.||.+||.+|..
T Consensus 366 ~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~ 445 (450)
T COG1231 366 FGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHA 445 (450)
T ss_pred CChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHH
Confidence 99 56667666 78999999999998888889999999999999999999999555556889999999999999999987
Q ss_pred HHH
Q 010587 476 RVL 478 (506)
Q Consensus 476 ~l~ 478 (506)
.+.
T Consensus 446 ~l~ 448 (450)
T COG1231 446 LLS 448 (450)
T ss_pred hhc
Confidence 764
No 10
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.1e-40 Score=307.04 Aligned_cols=427 Identities=30% Similarity=0.428 Sum_probs=305.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcC-CCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPL 104 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-l~~ 104 (506)
...+|+|||||+|||+||.+|.+.|. +|+|+|+.+|+|||+.|.+..+-.+|+|++|+|+ ..++++.++.+++| +..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG-~~gNpVY~la~~~g~~~~ 98 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG-EEGNPVYELAKEYGDLKL 98 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC-CCCChHHHHHHHhCccce
Confidence 45699999999999999999998875 7999999999999999999888899999999997 47789999999987 443
Q ss_pred eecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 010587 105 YRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAIS 184 (506)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 184 (506)
....++... .+......+...+......+.+....+.....+.. -....-|+.+++.
T Consensus 99 ~~~tg~~~~----------------------~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~SvG~~ln 155 (498)
T KOG0685|consen 99 LEVTGPAYV----------------------DNFHTRSNGEVVPEELLDELNEITVTLSDKLREAE-IAHDEGSVGEYLN 155 (498)
T ss_pred eccCCcccc----------------------ceeEEEecCccCcHHHHHHHHHHHHhhhhhccccc-ccCccccHHHHHH
Confidence 332222111 12223344455555555555444332222221110 0123345665554
Q ss_pred H-HHcc---Cch-hhhhhhHHHHHHHHHHhhhhcccC-CcccccccccccccccCC--CccccccchHHHHHHHhccC--
Q 010587 185 I-VFDR---RPE-LRLEGLAHKVLQWYLCRMEGWFAA-DAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGL-- 254 (506)
Q Consensus 185 ~-~~~~---~~~-l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~g~-- 254 (506)
. +... ... ...+.+..++++.|........+. +.+.+|+..+.......+ .......|+..+.+.|.+..
T Consensus 156 ~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~ 235 (498)
T KOG0685|consen 156 SEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPA 235 (498)
T ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCC
Confidence 3 1111 111 113445566666666666554444 667888777766555566 45567789999998886521
Q ss_pred ---------CeeeCCeeEEEEEcC-CcEEEEEcCCcEEEcCEEEEecChhhhhcCc-ccccCCCChHHHHHHHhcCCccc
Q 010587 255 ---------DIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVLKART-IKFEPRLPDWKEAAIDDLGVGIE 323 (506)
Q Consensus 255 ---------~i~~~~~V~~I~~~~-~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~-~~~~~~lp~~~~~~~~~~~~~~~ 323 (506)
+++++++|.+|..++ +.|.|+..||+.+.||+||+++++..++.-- .-|.|+||..+.+++.++.++..
T Consensus 236 ~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv 315 (498)
T KOG0685|consen 236 QNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTV 315 (498)
T ss_pred cchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCcc
Confidence 466779999999875 6799999999999999999999998776421 13789999999999999999999
Q ss_pred cEEEEEeCCCCCCCC-Cccee-ecCCC----------Ccc--eeeeccccCCCceEEEEEeccchhHHhhcCCHHHHHHH
Q 010587 324 NKIIMHFDKVFWPNV-EFLGV-VSDTS----------YGC--SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANF 389 (506)
Q Consensus 324 ~~v~~~~~~~~~~~~-~~~g~-~~~~~----------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~ 389 (506)
.|+++-|++++|+.. ..+-. ..+.. +.. ..+.. ....+.+|..++.+.-+..++.++++++++.
T Consensus 316 ~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~--v~~~~~vL~gWiaG~~~~~me~lsdEev~e~ 393 (498)
T KOG0685|consen 316 NKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQP--VSWAPNVLLGWIAGREARHMETLSDEEVLEG 393 (498)
T ss_pred ceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEE--cCcchhhhheeccCCcceehhhCCHHHHHHH
Confidence 999999999999864 11111 11111 010 11111 1223478888888988888999999999999
Q ss_pred HHHHHHHHCC--CCCCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhc--------CCCCceEeeccccCCcCcchh
Q 010587 390 AFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR--------IPVDNLFFAGEATSMSYPGSV 459 (506)
Q Consensus 390 ~~~~L~~~~p--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~--------~p~~~l~~aG~~~~~~~~g~~ 459 (506)
+...|++.++ .++.|..+....|..++++.|.|++..++.......... ++.+.|.|||++++..++.++
T Consensus 394 ~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTt 473 (498)
T KOG0685|consen 394 LTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTT 473 (498)
T ss_pred HHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehh
Confidence 9999999986 577788888899999999999999887776543222222 234689999999999888999
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 010587 460 HGAFSTGLMAAEDCRMRVLE 479 (506)
Q Consensus 460 egA~~sG~~aA~~i~~~l~~ 479 (506)
.||+.||.+-|++++.....
T Consensus 474 hGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 474 HGAVLSGWREADRLLEHYES 493 (498)
T ss_pred hhhHHhhHHHHHHHHHHHHh
Confidence 99999999999998885444
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.7e-39 Score=330.63 Aligned_cols=399 Identities=20% Similarity=0.294 Sum_probs=280.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~ 103 (506)
++||+|||||+|||+||++|+++ |++|+|+|+++++||+++|...+|+.+|.|+|+++.. +..+.++++++|++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~--~~~~~~l~~~lgl~ 79 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLER--KKSAPDLVKDLGLE 79 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccC--ChHHHHHHHHcCCC
Confidence 47999999999999999999999 9999999999999999999999999999999999843 45589999999997
Q ss_pred eeecC--CCCcccccc-hhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHH-------HHHHHHHHHHHHHHHhhcC
Q 010587 104 LYRTS--GDNSVLYDH-DLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTK-------VGEAFESILKETDKVREEH 173 (506)
Q Consensus 104 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 173 (506)
..... ....+.+.. +.. .++|...... +...+........ ....
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 133 (462)
T TIGR00562 80 HVLVSDATGQRYVLVNRGKL------------------------MPVPTKIAPFVKTGLFSLGGKLRAGMDFIR--PASP 133 (462)
T ss_pred cccccCCCCceEEEECCCce------------------------ecCCCChHHHhcCCCCCchhhHHhhhhhcc--CCCC
Confidence 54322 112222211 111 0111110000 0000111111110 0112
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCcccccccccccc-----------------------
Q 010587 174 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE----------------------- 229 (506)
Q Consensus 174 ~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~----------------------- 229 (506)
..+.|+.+|+.. .+.+++.+.++.++ .+.++.+++++|+......
T Consensus 134 ~~d~s~~e~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 202 (462)
T TIGR00562 134 GKDESVEEFVRR-----------RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQ 202 (462)
T ss_pred CCCcCHHHHHHH-----------hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCc
Confidence 346899999863 35566777777776 6678888877776532100
Q ss_pred ----ccc---CCC-ccccccchHHHHHHHhcc---CCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 230 ----ELL---PGG-HGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 230 ----~~~---~~~-~~~~~~G~~~l~~~l~~g---~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
..+ .+. ...+.+|++.++++|.+. .+|+++++|++|+.++++|+|++.+|++++||+||+|+|+..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ 282 (462)
T TIGR00562 203 GSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG 282 (462)
T ss_pred cccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH
Confidence 000 011 345889999999999763 579999999999999888999988888899999999999998765
Q ss_pred CcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCC-CcceeecCCCC---c-ceeee----ccccCCCceEEEEE
Q 010587 299 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSY---G-CSYFL----NLHKATGHCVLVYM 369 (506)
Q Consensus 299 ~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~~---~-~~~~~----~~~~~~~~~~l~~~ 369 (506)
+ .|.+|+...+.+.++.+.+..++.+.|++++|+.. ...|.+.+... . ...+. +...+.+..+++++
T Consensus 283 l----l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~ 358 (462)
T TIGR00562 283 L----LSELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAY 358 (462)
T ss_pred H----hcccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEE
Confidence 4 35577788888999999999999999988777532 23455443321 1 11221 12234566778888
Q ss_pred eccchhHHhhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEecccCCCCCCCcccccCCCCC---ChHHHHHhcCCCCceEe
Q 010587 370 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGK---SHDLYERLRIPVDNLFF 446 (506)
Q Consensus 370 ~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~---~~~~~~~~~~p~~~l~~ 446 (506)
..+.....+.+++++++++.++++|.++++...+|....+++|.. +++.|. +++ .....+.+..+.+||++
T Consensus 359 ~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~---a~P~~~---~g~~~~~~~i~~~l~~~~~~l~l 432 (462)
T TIGR00562 359 IGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHR---AIPQYH---VGHDQRLKEARELLESAYPGVFL 432 (462)
T ss_pred eCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccc---cCCCCC---CChHHHHHHHHHHHHhhCCCEEE
Confidence 877767778888999999999999999997544578888999964 444443 443 22333334456689999
Q ss_pred eccccCCcCcchhhHHHHHHHHHHHHHHHHHH
Q 010587 447 AGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 478 (506)
Q Consensus 447 aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~ 478 (506)
||+++.. .++++|+.||.++|+++++.+.
T Consensus 433 ~G~~~~g---~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 433 TGNSFEG---VGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred eccccCC---CcHHHHHHHHHHHHHHHHHhhc
Confidence 9999753 6999999999999999988763
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=5.8e-39 Score=326.06 Aligned_cols=408 Identities=15% Similarity=0.205 Sum_probs=271.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC------CCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG 101 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (506)
+++|+|||||+|||+||++|+++ |.+|+|||+++++||+++|.+..|+.+|.|+|+++. .+..+.++++++|
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~--~~~~~~~l~~~lg 78 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA--RNEHVMPLVKDLN 78 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc--CCHHHHHHHHHcC
Confidence 35799999999999999999986 379999999999999999999999999999999874 3456899999999
Q ss_pred CCeeecC--CCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHH-------HHHHHHHHHHHHHhhc
Q 010587 102 LPLYRTS--GDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVREE 172 (506)
Q Consensus 102 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 172 (506)
++..... ......+..+... .+ .......+|......+. ..+..+.... .....
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~--------------~~--p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 141 (463)
T PRK12416 79 LEEEMVYNETGISYIYSDNTLH--------------PI--PSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFI-TKNKE 141 (463)
T ss_pred CccceecCCCCceEEEECCeEE--------------EC--CCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhc-cCCCC
Confidence 9754322 1122222211110 00 00000001111111000 0111111111 11112
Q ss_pred CCCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCcccccccccccc---------cc-----------
Q 010587 173 HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---------EL----------- 231 (506)
Q Consensus 173 ~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---------~~----------- 231 (506)
..++.|+.+|+.+ .+.+++.+.++.++ .+.++.++.++|+...... .+
T Consensus 142 ~~~~~sv~~~l~~-----------~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 210 (463)
T PRK12416 142 FTKDTSLALFLES-----------FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQF 210 (463)
T ss_pred CCCCCCHHHHHHH-----------hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhcc
Confidence 2467899999763 35566777777775 5678888888876431100 00
Q ss_pred -cC--CCccccccchHHHHHHHhccC---CeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccC
Q 010587 232 -LP--GGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEP 305 (506)
Q Consensus 232 -~~--~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~ 305 (506)
.. ....++.+||+.|+++|.+.+ +|++|++|++|+.+++++.|++.+|+++.||+||+|+|+..+..++ +.|
T Consensus 211 ~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~ 288 (463)
T PRK12416 211 QSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLL--QSN 288 (463)
T ss_pred CCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhc--CCc
Confidence 01 123468999999999998754 6999999999999988999998888889999999999998876543 234
Q ss_pred CCChHHHHHHHhcCCccccEEEEEeCCCCCC-CCCcceeecCCCCcc---e-eeec----cccCCCceEEEEEec--cch
Q 010587 306 RLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSYGC---S-YFLN----LHKATGHCVLVYMPA--GQL 374 (506)
Q Consensus 306 ~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~g~~~~~~~~~---~-~~~~----~~~~~~~~~l~~~~~--~~~ 374 (506)
.+ ...+.++.+.+..++++.|+.+.|. .....|.+.+..... . .+.+ ...+++..++..+.. +..
T Consensus 289 ~l----~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~ 364 (463)
T PRK12416 289 EL----NEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPV 364 (463)
T ss_pred ch----hHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCC
Confidence 33 3456778888899999999976553 123356665443211 1 1111 111233334444443 345
Q ss_pred hHHhhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeeccccCCc
Q 010587 375 ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMS 454 (506)
Q Consensus 375 ~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~ 454 (506)
++.+.+++++++.+.++++|.++++...+|+...+.+|.. +.+.|...+........+.+..+.+||++||+++..
T Consensus 365 ~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~---a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g- 440 (463)
T PRK12416 365 YETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKD---LMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG- 440 (463)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccc---cCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc-
Confidence 6778889999999999999999998666788899999964 334443211111223334555667899999999765
Q ss_pred CcchhhHHHHHHHHHHHHHHHHH
Q 010587 455 YPGSVHGAFSTGLMAAEDCRMRV 477 (506)
Q Consensus 455 ~~g~~egA~~sG~~aA~~i~~~l 477 (506)
.++++|+.||.++|++|++.+
T Consensus 441 --~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 441 --VGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred --ccHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999998764
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=1.4e-37 Score=316.22 Aligned_cols=401 Identities=21% Similarity=0.293 Sum_probs=262.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010587 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~~ 106 (506)
++|+|||||+|||+||+.|++.| ++|+|||+++++||+++|...+|+.+|.|+|++++ .+..+.++++++|++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~ 78 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLA--RKPSAPALVKELGLEDEL 78 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC--CcHHHHHHHHHcCCccce
Confidence 47999999999999999999988 89999999999999999999999999999998764 345689999999997432
Q ss_pred cC--CCCcccccchhhhHHHHHHHHhhhccccceeecCC-CCccCHHHHHHH-HHHH---HHH--HHHHHHHhhcCCCCC
Q 010587 107 TS--GDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMD-GNQVPQELVTKV-GEAF---ESI--LKETDKVREEHDEDM 177 (506)
Q Consensus 107 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~---~~~--~~~~~~~~~~~~~~~ 177 (506)
.. ......+.++.. ..++.. ...++......+ ...+ ..+ ............++.
T Consensus 79 ~~~~~~~~~~~~~g~~-----------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (451)
T PRK11883 79 VANTTGQSYIYVNGKL-----------------HPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQ 141 (451)
T ss_pred ecCCCCcceEEECCeE-----------------EECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCc
Confidence 21 122222222111 000000 000111000000 0000 000 000000011224567
Q ss_pred CHHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCcccccccccccc-----------------cc------cC
Q 010587 178 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-----------------EL------LP 233 (506)
Q Consensus 178 s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-----------------~~------~~ 233 (506)
|+.+|+.+ .++..+.+.++.++ .+.++.+++.+|+...... .. -.
T Consensus 142 s~~e~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T PRK11883 142 SVGAFFRR-----------RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTK 210 (451)
T ss_pred CHHHHHHH-----------hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCC
Confidence 89998763 35566777777776 5677788888775432100 00 01
Q ss_pred CCccccccchHHHHHHHhccC---CeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChH
Q 010587 234 GGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 310 (506)
Q Consensus 234 ~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~ 310 (506)
..+..+.+|++.++++|.+.+ +|+++++|++|+.++++|+|++.+|++++||+||+|+|+..+..++. ++.
T Consensus 211 ~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~------~~~ 284 (451)
T PRK11883 211 GVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFV------APP 284 (451)
T ss_pred CceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhcc------Chh
Confidence 123468999999999998754 59999999999999888999998998999999999999998876532 233
Q ss_pred HHHHHHhcCCccccEEEEEeCCCCCCCCCcceeecCCC-C--ccee-ee----ccccCCCceEEEEEeccchhHHhhcCC
Q 010587 311 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTS-Y--GCSY-FL----NLHKATGHCVLVYMPAGQLARDIEKMS 382 (506)
Q Consensus 311 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~-~--~~~~-~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~ 382 (506)
..+.+..+.+.+..++++.|+.+++......|.+.... . .... +. +...+.+..++..+..........+++
T Consensus 285 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~ 364 (451)
T PRK11883 285 AFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDAT 364 (451)
T ss_pred HHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCC
Confidence 46777889999999999999988532223334443311 1 1111 11 112233455544444333233456778
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCC---CCceEeeccccCCcCcchh
Q 010587 383 DEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP---VDNLFFAGEATSMSYPGSV 459 (506)
Q Consensus 383 ~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p---~~~l~~aG~~~~~~~~g~~ 459 (506)
++++++.++++|.++++...+++...+.+|... ++.| .++. ....+.++.+ ++|||+||+++.. +++
T Consensus 365 ~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a---~p~~---~~~~-~~~~~~l~~~l~~~~~l~~aG~~~~g---~~i 434 (451)
T PRK11883 365 DEELVAFVLADLSKVMGITGDPEFTIVQRWKEA---MPQY---GVGH-IERVAELRAGLPHYPGLYVAGASFEG---VGL 434 (451)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeecCcc---CCCC---CccH-HHHHHHHHHhhhhCCCEEEECcccCC---ccH
Confidence 999999999999999975556778888899752 2222 2333 2222222222 5799999999753 689
Q ss_pred hHHHHHHHHHHHHHHH
Q 010587 460 HGAFSTGLMAAEDCRM 475 (506)
Q Consensus 460 egA~~sG~~aA~~i~~ 475 (506)
++|+.||+++|++|+.
T Consensus 435 ~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 435 PDCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998875
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.1e-37 Score=319.83 Aligned_cols=408 Identities=21% Similarity=0.255 Sum_probs=269.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~ 104 (506)
+.++||+|||||++||+||++|+++ |++|+|||+++++||+++|...+|+.+|.|+|++.. .+..+..++++ |++.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~-gl~~ 86 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP--SDPELTSAVDS-GLRD 86 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhcc--CcHHHHHHHHc-CChh
Confidence 4578999999999999999999999 999999999999999999999999999999999863 23345556655 7753
Q ss_pred eec--CC-CCccc-ccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCCH
Q 010587 105 YRT--SG-DNSVL-YDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK-VREEHDEDMSI 179 (506)
Q Consensus 105 ~~~--~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 179 (506)
... .. ...+. ++++... .+...... ... ..+ ....++ ......... ......++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~g~~~~-~p~~~~~~---------~~~--~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~sv 148 (496)
T PLN02576 87 DLVFPDPQAPRYVVWNGKLRP-LPSNPIDL---------PTF--DLL--SAPGKI----RAGLGAFGWKRPPPPGREESV 148 (496)
T ss_pred heecCCCCceEEEEECCEEEE-cCCChHHh---------cCc--CcC--ChhHHH----HHhHHHhhccCCCCCCCCCcH
Confidence 221 11 11111 1221110 00000000 000 000 001111 111111100 01122467899
Q ss_pred HHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCcccccccccccc-----------------cc----------
Q 010587 180 QRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-----------------EL---------- 231 (506)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-----------------~~---------- 231 (506)
++|+.+ .+++++.+.++.++ .+.++.+++++|+...... ..
T Consensus 149 ~~~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~ 217 (496)
T PLN02576 149 GEFVRR-----------HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPE 217 (496)
T ss_pred HHHHHH-----------hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccc
Confidence 999863 46778888888886 7788888888887642110 00
Q ss_pred ---------cCCCccccccchHHHHHHHhccC---CeeeCCeeEEEEEcCCc-EEEEEc--CCc-EEEcCEEEEecChhh
Q 010587 232 ---------LPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIG-VKVTVE--GGK-TFVADAVVVAVPLGV 295 (506)
Q Consensus 232 ---------~~~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~-v~V~~~--~G~-~i~ad~VI~a~~~~~ 295 (506)
.......+.+|++.|+++|++.+ +|++|++|++|+..+++ |.|+.. +|+ ++.||+||+|+|+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~ 297 (496)
T PLN02576 218 PRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYV 297 (496)
T ss_pred ccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHH
Confidence 00113467899999999998754 59999999999998776 665543 553 699999999999999
Q ss_pred hhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCC-------CcceeecCCCCc---c-eeeec----cccC
Q 010587 296 LKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-------EFLGVVSDTSYG---C-SYFLN----LHKA 360 (506)
Q Consensus 296 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~g~~~~~~~~---~-~~~~~----~~~~ 360 (506)
+..++. .+++...+.+.++.+.+..+|.+.|++++|... ...|.+.+.... . ..+.+ ...+
T Consensus 298 l~~ll~----~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~ 373 (496)
T PLN02576 298 VSEMLR----PKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAP 373 (496)
T ss_pred HHHHhc----ccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCC
Confidence 876543 345667788899999999999999999888642 223443322111 0 11111 1123
Q ss_pred CCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCCC--CCCcEEEecccCCCCCCCcccccCCCCCC---hHHHH
Q 010587 361 TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYE 435 (506)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~--~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~ 435 (506)
++..+++.++.+..+..+.+++++++++.++++|.++++.. ..|....+.+|.. +++.|. +++. .+...
T Consensus 374 ~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~---a~P~~~---~g~~~~~~~~~~ 447 (496)
T PLN02576 374 EGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK---AIPQYL---LGHLDVLEAAEK 447 (496)
T ss_pred CCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc---ccCCCC---cCHHHHHHHHHH
Confidence 45667778888877778888999999999999999999742 2566667788964 333333 3331 11222
Q ss_pred HhcCC-CCceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHH
Q 010587 436 RLRIP-VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 478 (506)
Q Consensus 436 ~~~~p-~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~ 478 (506)
.+... .+|||+||+++.. .++++|+.||.++|++|++.+.
T Consensus 448 ~l~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 448 MEKDLGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred HHHhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 22222 2699999999874 6999999999999999988764
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-37 Score=299.64 Aligned_cols=403 Identities=23% Similarity=0.278 Sum_probs=286.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCee-
Q 010587 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY- 105 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~- 105 (506)
+.|+|||||+|||+|||+|++.+ .+|+|||+.+++||.++|+..+|+.+|.|+|.+..- ...+.+++++||++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~--~~~~l~li~eLGled~l 78 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR--KEEILDLIKELGLEDKL 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc--hHHHHHHHHHhCcHHhh
Confidence 46999999999999999999999 899999999999999999999999999999988643 3788999999999843
Q ss_pred -ecCCCCc-ccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHH-HHHHHHhhcCCCCCCHHHH
Q 010587 106 -RTSGDNS-VLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESIL-KETDKVREEHDEDMSIQRA 182 (506)
Q Consensus 106 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~ 182 (506)
+...... +++.+.+. .+....- ..+|...... .....+++ ....+......++.++.+|
T Consensus 79 ~~~~~~~~~i~~~gkl~---------------p~P~~~i--~~ip~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~sv~~f 140 (444)
T COG1232 79 LWNSTARKYIYYDGKLH---------------PIPTPTI--LGIPLLLLSS-EAGLARALQEFIRPKSWEPKQDISVGEF 140 (444)
T ss_pred ccCCcccceEeeCCcEE---------------ECCccce--eecCCccccc-hhHHHHHHHhhhcccCCCCCCCcCHHHH
Confidence 2333333 33333332 0000000 0011100000 01111221 2222222356678999999
Q ss_pred HHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCcccccccccccc---------cc--------------cCCCccc
Q 010587 183 ISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---------EL--------------LPGGHGL 238 (506)
Q Consensus 183 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---------~~--------------~~~~~~~ 238 (506)
++ +++++++.+.++.|+ .+.|+.+++++|+...... .. ..+.++.
T Consensus 141 ~r-----------~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~ 209 (444)
T COG1232 141 IR-----------RRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGY 209 (444)
T ss_pred HH-----------HHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccc
Confidence 87 568899999999986 8899999999998732210 01 0134668
Q ss_pred cccchHHHHHHHhccC--CeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHH
Q 010587 239 MVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 316 (506)
Q Consensus 239 ~~~G~~~l~~~l~~g~--~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~ 316 (506)
+.+|+++++++|.+.+ +|+++++|++|..+.+++.+.+.+|++++||.||+|+|++.+..++.+ ....+...
T Consensus 210 ~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~------~~~~~~~~ 283 (444)
T COG1232 210 LRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD------EAVSKAAK 283 (444)
T ss_pred cCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC------cchhhhhh
Confidence 8999999999998744 689999999999998888888889999999999999999998765433 22356777
Q ss_pred hcCCccccEEEEEeCCC-CCCCCCcceeecCCCCc----c---eeeeccccCCCceEEEEEeccchhHHhhcCCHHHHHH
Q 010587 317 DLGVGIENKIIMHFDKV-FWPNVEFLGVVSDTSYG----C---SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 388 (506)
Q Consensus 317 ~~~~~~~~~v~~~~~~~-~~~~~~~~g~~~~~~~~----~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~ 388 (506)
.+.+....+|.+.++.. .....+..|..+.+... + +.+++...+.|+.++.+............+++||+++
T Consensus 284 ~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~ 363 (444)
T COG1232 284 ELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVA 363 (444)
T ss_pred hccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHH
Confidence 88887888888888764 11111223443333221 1 2333334455777887777776666677888999999
Q ss_pred HHHHHHHHHCCCCCCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhHHHHHHHH
Q 010587 389 FAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLM 468 (506)
Q Consensus 389 ~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~ 468 (506)
.+++.|.++++...+|....+.+|.. ++++|.-.+-....+.+..+.+.++||.++|.+... -++.+|+.+|..
T Consensus 364 ~~l~~L~~~~~~~~~~~~~~v~r~~~---~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~ 437 (444)
T COG1232 364 AVLDDLKKLGGINGDPVFVEVTRWKY---AMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKE 437 (444)
T ss_pred HHHHHHHHHcCcCcchhheeeeeccc---cCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHH
Confidence 99999999999878888888999954 666665333333445555566555899999999653 478889999999
Q ss_pred HHHHHH
Q 010587 469 AAEDCR 474 (506)
Q Consensus 469 aA~~i~ 474 (506)
||++++
T Consensus 438 aa~~l~ 443 (444)
T COG1232 438 AAEQLL 443 (444)
T ss_pred HHHHhh
Confidence 999875
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=313.30 Aligned_cols=406 Identities=19% Similarity=0.222 Sum_probs=260.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCee--ec
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY--RT 107 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~--~~ 107 (506)
+|+|||||++||+||+.|+++|++|+|+|+++++||++.+...+|+.+|.|+|++.. .+.++.++++++|++.. ..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~--~~~~~~~l~~~lg~~~~~~~~ 78 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK--SDEALLELLDELGLEDKLRWR 78 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc--ccHHHHHHHHHcCCCCceeec
Confidence 589999999999999999999999999999999999999999999999999998863 45688999999998632 11
Q ss_pred CCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCCHHHHHHHH
Q 010587 108 SGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK-VREEHDEDMSIQRAISIV 186 (506)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~ 186 (506)
.....+.+.+... ...+. .... .. ..++ ..+++......+ .... ......++.++.+|+...
T Consensus 79 ~~~~~~~~~~~~~-~~~~~-~~~~----------~~-~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~l~~~ 141 (434)
T PRK07233 79 ETKTGYYVDGKLY-PLGTP-LELL----------RF-PHLS--LIDKFRLGLLTL--LARRIKDWRALDKVPAEEWLRRW 141 (434)
T ss_pred cCceEEEECCeEe-cCCCH-HHHH----------cC-CCCC--HHHHHHhHHHHH--hhhhcccccccccccHHHHHHHh
Confidence 1112222222111 00000 0000 00 0011 111111111110 0111 111234567898887643
Q ss_pred HccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccccc---c------cCCCccccccchHHHHHHHhc----
Q 010587 187 FDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---L------LPGGHGLMVRGYLPVINTLAK---- 252 (506)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---~------~~~~~~~~~~G~~~l~~~l~~---- 252 (506)
+.++..+.++.++ ...++.+++++++..+.... . ......++++|++.++++|.+
T Consensus 142 -----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~ 210 (434)
T PRK07233 142 -----------SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEA 210 (434)
T ss_pred -----------cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHh
Confidence 2344555555554 56777888888876432110 0 012356789999999998864
Q ss_pred -cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeC
Q 010587 253 -GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 331 (506)
Q Consensus 253 -g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~ 331 (506)
|++|++|++|++|+.+++++.+...+|++++||+||+|+|+..+..++ |.+++...+.+..+.+.+..++.+.++
T Consensus 211 ~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 286 (434)
T PRK07233 211 RGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLV----PDLPADVLARLRRIDYQGVVCMVLKLR 286 (434)
T ss_pred cCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhc----CCCcHHHHhhhcccCccceEEEEEEec
Confidence 779999999999998888877555677789999999999998876543 456666667788888888888899998
Q ss_pred CCCCCCCCcceeecCCCCcc-----eeeeccccCCCceEE--EEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCCCCC-
Q 010587 332 KVFWPNVEFLGVVSDTSYGC-----SYFLNLHKATGHCVL--VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS- 403 (506)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~- 403 (506)
++.++ ..+.....+..... ..+.+...+++..++ ..+..... ++..++++++++.++++|.+++|++..
T Consensus 287 ~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p~~~~~ 363 (434)
T PRK07233 287 RPLTD-YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFPDFDRD 363 (434)
T ss_pred CCCCC-CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCCCCChh
Confidence 87533 11111000000011 111111122344443 23333332 355778999999999999999997532
Q ss_pred -CcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHH
Q 010587 404 -PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 479 (506)
Q Consensus 404 -~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~ 479 (506)
++...+.+| +++++.+ .++ .....+.+++|.+|||+||+++...+.++|++|+.||.+||++|++.++.
T Consensus 364 ~~~~~~~~r~---~~a~~~~---~~g-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~ 433 (434)
T PRK07233 364 DVRAVRISRA---PYAQPIY---EPG-YLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN 433 (434)
T ss_pred heeeEEEEEe---ccccccc---cCc-hhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence 334444444 3444443 233 23455667788999999999544334469999999999999999988763
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=2.1e-35 Score=299.22 Aligned_cols=404 Identities=21% Similarity=0.277 Sum_probs=254.5
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeec-CCCcEeecCCceeeCCCCCCchHHHHHhcCCCeeecC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~~~~ 108 (506)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|.. .+|+.+|.|.|++.. .+.++.++++++|++.....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lg~~~~~~~ 78 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFG--AYPNMLQLLKELNIEDRLQW 78 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceecc--CCchHHHHHHHcCCccceee
Confidence 589999999999999999999999999999999999999874 578999999999874 35678999999998643211
Q ss_pred CCCccccc--chhhhHHHHHHHHhhhccccceeecCCCCccCHHH-------------HHHHHHHHHHHHHHHHH--Hhh
Q 010587 109 GDNSVLYD--HDLERVLKTVVVSLIQANLCYALFDMDGNQVPQEL-------------VTKVGEAFESILKETDK--VRE 171 (506)
Q Consensus 109 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~--~~~ 171 (506)
......+. .... ....+.....+.+... .+++.- ...+...... ...
T Consensus 79 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 142 (453)
T TIGR02731 79 KSHSMIFNQPDKPG---------------TFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKF-AIGLLPAIVRGQKYV 142 (453)
T ss_pred cCCceEEecCCCCc---------------ceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHH-HHHhHHHHhcCccch
Confidence 11111111 0000 0000000000001000 000000 0001000000 001
Q ss_pred cCCCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccccc--ccC--CCc--cccccc--
Q 010587 172 EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE--LLP--GGH--GLMVRG-- 242 (506)
Q Consensus 172 ~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~--~~~--~~~--~~~~~G-- 242 (506)
...++.|+.+|+++ .++++.+.+.++.++ .+.++.++..+|+..+.... ++. .+. ....++
T Consensus 143 ~~~~~~s~~~~l~~----------~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~ 212 (453)
T TIGR02731 143 EEQDKYTVTEWLRK----------QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPP 212 (453)
T ss_pred hhhccCCHHHHHHH----------cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCCh
Confidence 23467899998753 345566666666665 45667778788876543111 111 110 112222
Q ss_pred ---hHHHHHHHh-ccCCeeeCCeeEEEEEcCCc-E-EEEEcCCc-----EEEcCEEEEecChhhhhcCcccccCCCC-hH
Q 010587 243 ---YLPVINTLA-KGLDIRLGHRVTKITRHYIG-V-KVTVEGGK-----TFVADAVVVAVPLGVLKARTIKFEPRLP-DW 310 (506)
Q Consensus 243 ---~~~l~~~l~-~g~~i~~~~~V~~I~~~~~~-v-~V~~~~G~-----~i~ad~VI~a~~~~~~~~~~~~~~~~lp-~~ 310 (506)
.+.+.+.+. .|++|++|++|++|+.++++ + .|++.+|+ ++.||.||+|+|++.+..++.. .++ ..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~---~~~~~~ 289 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQ---PWKQMP 289 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCch---hhhcCH
Confidence 344555553 38899999999999865443 4 36666665 7899999999999887654321 121 23
Q ss_pred HHHHHHhcCCccccEEEEEeCCCCCCCCCcceeecCCCCcceeeec------cccCCCceEEEEEeccchhHHhhcCCHH
Q 010587 311 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN------LHKATGHCVLVYMPAGQLARDIEKMSDE 384 (506)
Q Consensus 311 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 384 (506)
..+.+..+.+.+..++.+.++++++... +.+...........+ ...+++..++.++.. .+..+..++++
T Consensus 290 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~e 364 (453)
T TIGR02731 290 FFQKLNGLEGVPVINVHIWFDRKLTTVD---HLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFA--PAADWIGRSDE 364 (453)
T ss_pred HHHHhhcCCCCcEEEEEEEEccccCCCC---ceeeeCCCcceeecchhhhChhhcCCCCeEEEEEec--ChhhhhcCCHH
Confidence 4455666778889999999999887543 222211111000000 111233444443332 23567889999
Q ss_pred HHHHHHHHHHHHHCCCC---CCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhH
Q 010587 385 AAANFAFTQLKKILPDA---SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHG 461 (506)
Q Consensus 385 e~~~~~~~~L~~~~p~~---~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~eg 461 (506)
|+++.++++|.++||.. ..+.++..+.|..++++. |. ..++ .....+.+++|++||||||++++..|+|+|||
T Consensus 365 e~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg-~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~eg 440 (453)
T TIGR02731 365 EIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YK-TTPG-RQQYRPHQKTPIPNFFLAGDYTKQKYLASMEG 440 (453)
T ss_pred HHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--ec-cCCC-ChhhCccccCccCCEEEeehhccCcccccHHH
Confidence 99999999999999853 246667778888777763 32 2356 45777888999999999999999888899999
Q ss_pred HHHHHHHHHHHH
Q 010587 462 AFSTGLMAAEDC 473 (506)
Q Consensus 462 A~~sG~~aA~~i 473 (506)
|+.||.+||++|
T Consensus 441 Ai~SG~~AA~~v 452 (453)
T TIGR02731 441 AVLSGKLCAQAI 452 (453)
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 18
>PLN02612 phytoene desaturase
Probab=100.00 E-value=2.6e-35 Score=302.55 Aligned_cols=415 Identities=20% Similarity=0.238 Sum_probs=253.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeec-CCCcEeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~ 104 (506)
.+..+|+|||||++||+||++|++.|++|+|+|+++++||++.|.. .+|+.+|.|.|++.+. +.++.++++++|++.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~--~~~~~~ll~elG~~~ 168 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA--YPNVQNLFGELGIND 168 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCC--CchHHHHHHHhCCcc
Confidence 3468999999999999999999999999999999999999999876 4789999999999754 456899999999964
Q ss_pred eecCC-CCccc-ccchhhhHHHHHHHHhhhccccceeecCCCCccCHH---HHHHH--------HHHHHHHHHHHHH---
Q 010587 105 YRTSG-DNSVL-YDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQE---LVTKV--------GEAFESILKETDK--- 168 (506)
Q Consensus 105 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~--- 168 (506)
..... ....+ +..... .+..+. .....|.. ....+ .+.+.........
T Consensus 169 ~~~~~~~~~~~~~~~~~~---------------~~~~~~-~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~ 232 (567)
T PLN02612 169 RLQWKEHSMIFAMPNKPG---------------EFSRFD-FPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVG 232 (567)
T ss_pred cceecccceEEEecCCCC---------------ceeeCc-CchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcc
Confidence 32111 11111 110000 000000 00000000 00000 0000000000000
Q ss_pred --HhhcCCCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccc--ccccCC----Ccccc
Q 010587 169 --VREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK--EELLPG----GHGLM 239 (506)
Q Consensus 169 --~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~--~~~~~~----~~~~~ 239 (506)
......++.|+.+|+++ .++++.+.+.++.++ ...++.+++++|+..+.. ..++.. ...++
T Consensus 233 ~~~~~~~~d~~Sv~e~l~~----------~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~ 302 (567)
T PLN02612 233 GQAYVEAQDGLSVKEWMRK----------QGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFL 302 (567)
T ss_pred cchhhhhcCcCcHHHHHHh----------cCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeee
Confidence 01123457899998764 334455555555554 355566777777654431 111111 11123
Q ss_pred ccch-----HHHHHHHh-ccCCeeeCCeeEEEEEcCCc--EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHH
Q 010587 240 VRGY-----LPVINTLA-KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 311 (506)
Q Consensus 240 ~~G~-----~~l~~~l~-~g~~i~~~~~V~~I~~~~~~--v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~ 311 (506)
.|+. +.+++.|. .|++|++|++|++|+.++++ +.|.+.+|++++||+||+|+|+..+..++.... .+...
T Consensus 303 ~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~ 380 (567)
T PLN02612 303 DGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPY 380 (567)
T ss_pred cCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHH
Confidence 3333 44444443 38899999999999986554 347778898999999999999988776543211 12234
Q ss_pred HHHHHhcCCccccEEEEEeCCCCCCCCCcceeecCCCCcceeeecc------ccCCCceEEEEEeccchhHHhhcCCHHH
Q 010587 312 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNL------HKATGHCVLVYMPAGQLARDIEKMSDEA 385 (506)
Q Consensus 312 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~e 385 (506)
.+.+..+.+.+..++++.|++++|.... +.+.+.......+... ..+++..++.+.. ..+.+|..+++++
T Consensus 381 ~~~l~~l~~~~v~~v~l~~dr~~~~~~~--~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~--~~a~~~~~~sdee 456 (567)
T PLN02612 381 FKKLDKLVGVPVINVHIWFDRKLKNTYD--HLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVF--APAEEWISRSDED 456 (567)
T ss_pred HHHHHhcCCCCeEEEEEEECcccCCCCC--ceeecCCCCceeehhhhhcchhhcCCCCeEEEEEE--EcChhhhcCCHHH
Confidence 4556677888899999999999875321 1222111110011100 0123344444332 2456788999999
Q ss_pred HHHHHHHHHHHHCCCCCCC----cEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhH
Q 010587 386 AANFAFTQLKKILPDASSP----IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHG 461 (506)
Q Consensus 386 ~~~~~~~~L~~~~p~~~~~----~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~eg 461 (506)
+++.++++|+++||....+ ..+....+...|.. .|.. .++. ...+|..++|++|||||||++..+|+++|||
T Consensus 457 i~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a--~~~~-~pg~-~~~rp~~~tPi~~l~lAGd~t~~~~~~smeG 532 (567)
T PLN02612 457 IIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRS--VYKT-VPNC-EPCRPLQRSPIEGFYLAGDYTKQKYLASMEG 532 (567)
T ss_pred HHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCc--eEEe-CCCC-cccCccccCccCCEEEeecceeCCchhhHHH
Confidence 9999999999999975222 12222222222222 1221 1332 2345667889999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010587 462 AFSTGLMAAEDCRMRVL 478 (506)
Q Consensus 462 A~~sG~~aA~~i~~~l~ 478 (506)
|+.||++||++|++++.
T Consensus 533 Av~SG~~AA~~I~~~~~ 549 (567)
T PLN02612 533 AVLSGKLCAQSIVQDYE 549 (567)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998863
No 19
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=3.6e-36 Score=305.49 Aligned_cols=234 Identities=37% Similarity=0.568 Sum_probs=189.7
Q ss_pred cccchHHHHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHH
Q 010587 239 MVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 316 (506)
Q Consensus 239 ~~~G~~~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~ 316 (506)
..+++..+...+.+ |.+|++|++|++|+.++++++|++.+|++++||+||+|+|+..+.. +.+.|++|....+++.
T Consensus 207 ~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~ 284 (450)
T PF01593_consen 207 GMGGLSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIE 284 (450)
T ss_dssp ETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHH
T ss_pred cccchhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhccccccccccccc
Confidence 44555555555543 6799999999999999999999999999999999999999999874 5678899888888899
Q ss_pred hcCCccccEEEEEeCCCCCCCC-CcceeecCCC-Ccceeee-ccccC--CCceEEEEEeccchhHHhhcCCHHHHHHHHH
Q 010587 317 DLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS-YGCSYFL-NLHKA--TGHCVLVYMPAGQLARDIEKMSDEAAANFAF 391 (506)
Q Consensus 317 ~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~~-~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~ 391 (506)
.+.+.+..++++.|+.++|+.. ...+.+..+. ....++. ....+ ++...++.++.+.....+..++++++++.++
T Consensus 285 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 364 (450)
T PF01593_consen 285 NLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVL 364 (450)
T ss_dssp TEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHH
Confidence 9999999999999999999875 4566655544 1122222 22212 3577888888888778899999999999999
Q ss_pred HHHHHHCC--CCCCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCC-CceEeeccccCCcCcchhhHHHHHHHH
Q 010587 392 TQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLM 468 (506)
Q Consensus 392 ~~L~~~~p--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~egA~~sG~~ 468 (506)
++|.+++| ...+|..+.+.+|..+++..++|....++.....++.+++|. +||||||+++++.+.|+++||+.||.+
T Consensus 365 ~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~ 444 (450)
T PF01593_consen 365 DDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRR 444 (450)
T ss_dssp HHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHH
Confidence 99999999 355677888899999998888888776666666889999999 699999999998767899999999999
Q ss_pred HHHHHH
Q 010587 469 AAEDCR 474 (506)
Q Consensus 469 aA~~i~ 474 (506)
||++|+
T Consensus 445 aA~~il 450 (450)
T PF01593_consen 445 AAEEIL 450 (450)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999986
No 20
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=296.57 Aligned_cols=403 Identities=18% Similarity=0.147 Sum_probs=257.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCC-e
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP-L 104 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~-~ 104 (506)
.+++||+|||||++||+||++|+++|++|+|+|+++++||++.|....|+.+|.|+|++.. .+..+.+++++++.+ .
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~--~~~~~~~l~~~l~~~~~ 79 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS--KSPEVMDLWNEILPDDD 79 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc--CCHHHHHHHHHhcCCCc
Confidence 4578999999999999999999999999999999999999999999999999999998863 456789999999862 1
Q ss_pred eecCCCCc-ccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHH-----HHHHHHHHHHHHHHhhcCCCCCC
Q 010587 105 YRTSGDNS-VLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKV-----GEAFESILKETDKVREEHDEDMS 178 (506)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s 178 (506)
........ +.+.+... .+|......+ ......+............++.|
T Consensus 80 ~~~~~~~~~~~~~g~~~-------------------------~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s 134 (479)
T PRK07208 80 FLLRPRLSRIYYRGKFF-------------------------DYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDS 134 (479)
T ss_pred cccccccceEEECCEEe-------------------------cCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCC
Confidence 11111111 11121111 1111100000 01111111122211122345789
Q ss_pred HHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccccc---------------------------
Q 010587 179 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE--------------------------- 230 (506)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~--------------------------- 230 (506)
+++|+.. .+.+++.+.++.++ .+.|+.+++++|+.+.....
T Consensus 135 ~~e~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (479)
T PRK07208 135 FEDWVIN-----------RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVE 203 (479)
T ss_pred HHHHHHH-----------hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcc
Confidence 9999873 46677777777776 66788888888876422100
Q ss_pred -ccCCCccccccchHHHHHHHhc-----cCCeeeCCeeEEEEEcCCcE-E-EEE--cCCc--EEEcCEEEEecChhhhhc
Q 010587 231 -LLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV-K-VTV--EGGK--TFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 231 -~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v-~-V~~--~~G~--~i~ad~VI~a~~~~~~~~ 298 (506)
.......++.+|++.++++|.+ |++|++|++|++|+.+++++ . ++. .+|+ ++.||+||+|+|+..+..
T Consensus 204 ~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~ 283 (479)
T PRK07208 204 TSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA 283 (479)
T ss_pred ccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH
Confidence 0012345678999999998854 78999999999999987763 2 332 2453 689999999999988765
Q ss_pred CcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCCCcceeecCCCC------cceeeeccccCCCce-EEE-EEe
Q 010587 299 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY------GCSYFLNLHKATGHC-VLV-YMP 370 (506)
Q Consensus 299 ~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~-~l~-~~~ 370 (506)
++ .+.+|+...+.+..+.+.+..++.+.++++.+....+. .+..... ....+.+...+++.. .+. .+.
T Consensus 284 ~l---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~ 359 (479)
T PRK07208 284 AL---DPPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWI-YIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYF 359 (479)
T ss_pred hc---CCCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceE-EecCCCCccceecccccCCcccCCCCCceEEEEEEE
Confidence 43 35677777778888888888888999987643222211 1111000 001111222234442 221 122
Q ss_pred ccchhHHhhcCCHHHHHHHHHHHHHHHCCC-CCCCcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeecc
Q 010587 371 AGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGE 449 (506)
Q Consensus 371 ~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~ 449 (506)
.. ......+++++++++.++++|.++.+. ...++...+.+|. .+++.|....-.......+ ..++.+||+++|+
T Consensus 360 ~~-~~~~~~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~---~a~P~y~~~~~~~~~~~~~-~~~~~~~l~laGr 434 (479)
T PRK07208 360 CF-EGDDLWNMSDEDLIALAIQELARLGLIRPADVEDGFVVRVP---KAYPVYDGTYERNVEIIRD-LLDHFPNLHLVGR 434 (479)
T ss_pred cc-CCCccccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEec---CcccCCCchHHHHHHHHHH-HHHhcCCceeecc
Confidence 11 123355789999999999999998532 2234555566663 4555553211111111221 3466789999999
Q ss_pred ccCCcCcchhhHHHHHHHHHHHHHHHH
Q 010587 450 ATSMSYPGSVHGAFSTGLMAAEDCRMR 476 (506)
Q Consensus 450 ~~~~~~~g~~egA~~sG~~aA~~i~~~ 476 (506)
+....+ .++|+|+.||.++|++|+..
T Consensus 435 ~~~~~~-~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 435 NGMHRY-NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred cccccc-CChhHHHHHHHHHHHHHhcC
Confidence 876644 79999999999999987766
No 21
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=3.2e-33 Score=281.90 Aligned_cols=406 Identities=19% Similarity=0.168 Sum_probs=248.5
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEee-cCCCcEeecCCceeeCCCCCCchHHHHHhcCCCeeecC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~~~~ 108 (506)
+|+|||||++||+||++|++.|++|+|+|+++++||++++. ...|+.+|.|.|++.+ .+.++.++++++|+...-..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~--~~~~~~~~~~~lg~~~~~~~ 78 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFG--CYANLFRLMKKVGAEDNLLL 78 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecC--chHHHHHHHHHcCCcccccc
Confidence 58999999999999999999999999999999999999996 4679999999999975 34678999999998632211
Q ss_pred CCCcc-ccc-chhhhHHHHHHHHhhhccccceeecCCCCccCH------------HHHHHHHHHHHHH-HHHHHHH----
Q 010587 109 GDNSV-LYD-HDLERVLKTVVVSLIQANLCYALFDMDGNQVPQ------------ELVTKVGEAFESI-LKETDKV---- 169 (506)
Q Consensus 109 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~~~~---- 169 (506)
..... +.. ++... .+........|. ...+++....... .......
T Consensus 79 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~ 142 (474)
T TIGR02732 79 KEHTHTFVNKGGDIG----------------ELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYD 142 (474)
T ss_pred ccceeEEEcCCCccc----------------ccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccc
Confidence 11111 111 11100 000000000110 0011111000000 0000000
Q ss_pred ----hhcCCCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccc--cccc--CC--Cccc
Q 010587 170 ----REEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK--EELL--PG--GHGL 238 (506)
Q Consensus 170 ----~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~--~~~~--~~--~~~~ 238 (506)
.....+++|+.+|+++. +..+.+++.++.++ .+.++.+++++|+..+.. ..+. .. ....
T Consensus 143 ~~~~~~~~~~~~t~~~~l~~~----------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~ 212 (474)
T TIGR02732 143 GAMKTIRDLDKISFAEWFLSH----------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRM 212 (474)
T ss_pred hhhhhhhhhccccHHHHHHHc----------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeee
Confidence 01133568899987643 34445678888886 677788888998765421 1111 11 2234
Q ss_pred cccch-----HHHHHHHhc-cCCeeeCCeeEEEEEcC--Cc---EE-EEEcCC---cEEEcCEEEEecChhhhhcCcccc
Q 010587 239 MVRGY-----LPVINTLAK-GLDIRLGHRVTKITRHY--IG---VK-VTVEGG---KTFVADAVVVAVPLGVLKARTIKF 303 (506)
Q Consensus 239 ~~~G~-----~~l~~~l~~-g~~i~~~~~V~~I~~~~--~~---v~-V~~~~G---~~i~ad~VI~a~~~~~~~~~~~~~ 303 (506)
+.+++ +.+++.|.+ |++|+++++|++|+.++ ++ ++ |.+.+| +++.||+||+|+|+..+..++.+.
T Consensus 213 ~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~ 292 (474)
T TIGR02732 213 LKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQE 292 (474)
T ss_pred ecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChh
Confidence 45543 446677764 88999999999998854 22 32 445444 468999999999999888765432
Q ss_pred cCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCC---------Cccee-----ecCCCCcceee-----e-ccccCCCc
Q 010587 304 EPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGV-----VSDTSYGCSYF-----L-NLHKATGH 363 (506)
Q Consensus 304 ~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~g~-----~~~~~~~~~~~-----~-~~~~~~~~ 363 (506)
.+. ......+.++.+.++..|++.|+++.-... ...|. +.+..+.+... . .+......
T Consensus 293 ~~~--~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (474)
T TIGR02732 293 WRQ--FEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQG 370 (474)
T ss_pred hhc--CHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCC
Confidence 111 124566778888899999999986442211 00111 01001111000 0 01111222
Q ss_pred eEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCCCCC--CcEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCC
Q 010587 364 CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV 441 (506)
Q Consensus 364 ~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~ 441 (506)
.++.+++.. +.++.+++++++++.+.++|.++||.... +.+..+.+... ..|. ..||. .+.+|..++|.
T Consensus 371 ~~l~~~~~~--~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~-----a~~~-~~pg~-~~~~P~~~t~~ 441 (474)
T TIGR02732 371 SLLQCVLTP--GDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQ-----SLYR-EAPGM-DPFRPDQKTPI 441 (474)
T ss_pred eEEEEEEeC--hhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecC-----ceec-cCCCC-cccCCCCCCCC
Confidence 333344333 24577889999999999999999997543 23333333322 1121 12444 35668889999
Q ss_pred CceEeeccccCCcCcchhhHHHHHHHHHHHHHH
Q 010587 442 DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 474 (506)
Q Consensus 442 ~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~ 474 (506)
+|||+||||+..+|+.+||||+.||.+||+.|+
T Consensus 442 ~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 442 SNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999774
No 22
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=5.4e-33 Score=281.44 Aligned_cols=413 Identities=18% Similarity=0.134 Sum_probs=260.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeec-CCCcEeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~ 104 (506)
.++++|+|||||++||++|+.|++.|++|+|+|+++++||+++++. ..|+.+|.|.|++.+. +.++.++++++|++.
T Consensus 73 g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~--~~~~~~ll~~LGl~~ 150 (569)
T PLN02487 73 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC--YNNLFRLMKKVGADE 150 (569)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCC--cHHHHHHHHhcCCcc
Confidence 3457999999999999999999999999999999999999999985 5799999999998753 467999999999974
Q ss_pred eecCCCCcc-ccc-chhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHH--------HHHHH----H-HHHHHHH
Q 010587 105 YRTSGDNSV-LYD-HDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVG--------EAFES----I-LKETDKV 169 (506)
Q Consensus 105 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~----~-~~~~~~~ 169 (506)
......... ++. ++.. ..+........|......+. +.+.. . ...+...
T Consensus 151 ~~~~~~~~~~~~~~~g~~----------------~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al 214 (569)
T PLN02487 151 NLLVKDHTHTFVNKGGDV----------------GELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRAL 214 (569)
T ss_pred cccccccceeEEecCCEE----------------eeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhc
Confidence 322111111 111 1000 00000000000110000000 00000 0 0000000
Q ss_pred -h-------hcCCCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccccccc----C--C
Q 010587 170 -R-------EEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEELL----P--G 234 (506)
Q Consensus 170 -~-------~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~----~--~ 234 (506)
. ....+++|+.+|+++. +...++++.++.++ .+.++.+++++|+..+...... . +
T Consensus 215 ~~~~~~~~~~~~~d~~sv~~~l~r~----------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~ 284 (569)
T PLN02487 215 VDPDGAMRDIRDLDDISFSDWFTSH----------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEAS 284 (569)
T ss_pred cCccccccccccccCCcHHHHHHHh----------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 0 1234568999998653 23344788888886 6788899999997755422111 1 1
Q ss_pred CccccccchHH-HHHHHh-----ccCCeeeCCeeEEEEEcC--Cc---E-EEEE---cCCcEEEcCEEEEecChhhhhcC
Q 010587 235 GHGLMVRGYLP-VINTLA-----KGLDIRLGHRVTKITRHY--IG---V-KVTV---EGGKTFVADAVVVAVPLGVLKAR 299 (506)
Q Consensus 235 ~~~~~~~G~~~-l~~~l~-----~g~~i~~~~~V~~I~~~~--~~---v-~V~~---~~G~~i~ad~VI~a~~~~~~~~~ 299 (506)
..+++.+|+.. |.+.+. .|++|+++++|++|+.++ ++ + .|++ .+++.+.+|.||+|+|+..+..+
T Consensus 285 ~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 285 LLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred eeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence 24578899885 766664 389999999999999863 22 3 3555 23446899999999999988776
Q ss_pred cccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCC---------Ccceee-----cCCCCcceeee--c----ccc
Q 010587 300 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGVV-----SDTSYGCSYFL--N----LHK 359 (506)
Q Consensus 300 ~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~g~~-----~~~~~~~~~~~--~----~~~ 359 (506)
+.+..+..+ ....+.++...++..++++|+.++-... .+.|.. .+..+.+.... . +..
T Consensus 365 lp~~~~~~~--~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~ 442 (569)
T PLN02487 365 LPEQWREYE--FFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYK 442 (569)
T ss_pred CCchhhccH--HHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcc
Confidence 543222221 2456778878888999999986543211 112221 11111110000 0 001
Q ss_pred CCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCCCCC--CcEEEecccCCCCCCCcccccCCCCCChHHHHHh
Q 010587 360 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL 437 (506)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~ 437 (506)
......+.+++... .++..++++++++.+.++|.+++|.... +.+..+.+... ..|. ..||. ...+|..
T Consensus 443 ~~~g~~l~~vis~a--~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~-----at~~-~~pg~-~~~RP~~ 513 (569)
T PLN02487 443 EGEGSLIQAVLTPG--DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQ-----SLYR-EAPGM-DPFRPDQ 513 (569)
T ss_pred cCCceEEEEEEcCC--ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccC-----ceec-cCCCc-cccCCCC
Confidence 11234444444433 4578899999999999999999987543 23333333322 1221 12443 3456888
Q ss_pred cCCCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHH
Q 010587 438 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 477 (506)
Q Consensus 438 ~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l 477 (506)
++|++|||+||||+..+|+.+||||+.||.+||+.|+++.
T Consensus 514 ~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 514 KTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=6.2e-33 Score=279.59 Aligned_cols=396 Identities=22% Similarity=0.266 Sum_probs=251.7
Q ss_pred HHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCc--EeecCCceeeCCCCCCchHHHHHhcCCCeeecCCCCcc-ccc-c
Q 010587 42 AAARALHDASFKVVLLESRDRVGGRVHTDYSFGF--PVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSV-LYD-H 117 (506)
Q Consensus 42 ~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~--~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~-~~~-~ 117 (506)
+||++|+++|++|+|||+++++||++.|...+|+ .+|.|+|++++ .+..+.++++++|++.......... ++. +
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~ 78 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG--AYTNLLALLRRIGAEPRLQGPRLPLPFYDPG 78 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc--ccHHHHHHHHHhCCchhhhcccCCcceecCC
Confidence 5899999999999999999999999999988865 49999999974 4567899999999975432111111 111 1
Q ss_pred hhhhHHHHHHHHhhhccccceeec--CCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHccCchhhh
Q 010587 118 DLERVLKTVVVSLIQANLCYALFD--MDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRL 195 (506)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ 195 (506)
+........ . . ........ .....++.....++. ..+..+........++.|+.+|+++.
T Consensus 79 ~~~~~~~~~--~-~--~~p~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~l~~~--------- 140 (419)
T TIGR03467 79 GRLSRLRLS--R-L--PAPLHLARGLLRAPGLSWADKLALA----RALLALRRTRFRALDDTTVGDWLQAA--------- 140 (419)
T ss_pred CCceeecCC--C-C--CCCHHHHHHHhcCCCCCHHHHHHHH----HHHHHHHhcCccccCCCCHHHHHHHc---------
Confidence 110000000 0 0 00000000 000011111111111 11111111111345678999997642
Q ss_pred hhhHHHHHHHHHHhh-hhcccCCcccccccccccc---cccC----CCccccccchHHHHHH-Hh-----ccCCeeeCCe
Q 010587 196 EGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---ELLP----GGHGLMVRGYLPVINT-LA-----KGLDIRLGHR 261 (506)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---~~~~----~~~~~~~~G~~~l~~~-l~-----~g~~i~~~~~ 261 (506)
.+++++.+.++.++ .+.++.+++++|+..+... .+.. ....++.+|+++++.. |+ .|++|++|++
T Consensus 141 -~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~ 219 (419)
T TIGR03467 141 -GQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTR 219 (419)
T ss_pred -CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCe
Confidence 34556666667765 5677888888887654321 1111 1355778898776533 43 3889999999
Q ss_pred eEEEEEcCCcEEEEE-cCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCCCc
Q 010587 262 VTKITRHYIGVKVTV-EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEF 340 (506)
Q Consensus 262 V~~I~~~~~~v~V~~-~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 340 (506)
|++|+.+++++++.. .+|+++.||+||+|+|+..+..++. . +...+.+..+.+.+..++++.|+.++|.+..+
T Consensus 220 V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~----~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~ 293 (419)
T TIGR03467 220 VRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLLP----G--EDLGALLTALGYSPITTVHLRLDRAVRLPAPM 293 (419)
T ss_pred eeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhCC----C--chHHHHHhhcCCcceEEEEEEeCCCcCCCCCe
Confidence 999999888876543 4677899999999999999876432 1 14566788899999999999999999865555
Q ss_pred ceeecCCCCcceeeeccccCCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCCCC--CCCcEEEecccCCCCCC
Q 010587 341 LGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPIQYLVSHWGTDANS 418 (506)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~--~~~~~~~~~~w~~~~~~ 418 (506)
.|.+... ....+......+....+..+..+ +..+.+++++++.+.++++|.+++|.. ..+.+..+.+|...
T Consensus 294 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--- 366 (419)
T TIGR03467 294 VGLVGGL--AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRA--- 366 (419)
T ss_pred eeecCCc--eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCC---
Confidence 5554322 22222222222233444444333 456778899999999999999999865 23445555666431
Q ss_pred CcccccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHH
Q 010587 419 LGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 475 (506)
Q Consensus 419 ~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~ 475 (506)
.|.. .++. ...++.+.+|.+|||||||+++.+++++||||+.||.+||++|++
T Consensus 367 --~~~~-~~g~-~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 367 --TFAA-TPGL-NRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred --cccc-CCcc-cccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 2221 1332 234555668899999999999987778999999999999998863
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=1.1e-31 Score=274.39 Aligned_cols=427 Identities=18% Similarity=0.128 Sum_probs=239.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCeee--
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR-- 106 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~~-- 106 (506)
.||+|||||++||+||..|+++|++|+|+|+++++||+++|.+.+|+.||.|+|++.+......+..+++++|++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 689999999999999999999999999999999999999999999999999999997654445677889999987321
Q ss_pred -cCCCCcccccch-hhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHH------------------HH
Q 010587 107 -TSGDNSVLYDHD-LERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILK------------------ET 166 (506)
Q Consensus 107 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 166 (506)
......+.+.++ ....+..+......... ..+... ......+.+.+..+.. .+
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~--~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLWHDPDRWQKERE--RQFPGS-----ERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLV 154 (492)
T ss_pred cCCCCcEEEECCCceEeeeecCHHHHHHHHH--HHCCCh-----HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence 111111222211 00000000000000000 000000 0000011000000000 00
Q ss_pred HHH-----hhcCCCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhhhh-cccCCccccccccc---ccccccCCCcc
Q 010587 167 DKV-----REEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEG-WFAADAETISLKSW---DKEELLPGGHG 237 (506)
Q Consensus 167 ~~~-----~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~---~~~~~~~~~~~ 237 (506)
..+ ........++.++++... .+..+.++.++..... +.+.++...+.... ........+.+
T Consensus 155 ~~~~~~~~~~~~~~~~s~~~~l~~~~---------~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 225 (492)
T TIGR02733 155 SALRPDTLLTGPLSLLTVADLLRLCG---------LGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLW 225 (492)
T ss_pred HhcChhhhhhhhhhhhhHHHHHHHhC---------CCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCce
Confidence 000 000011234444433210 0223333333333222 22333434443221 11111224556
Q ss_pred ccccchHHHHHHHhc-----cCCeeeCCeeEEEEEcCCcE-EEEEcCC-----cEEEcCEEEEecChhhhhcCcccccCC
Q 010587 238 LMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV-KVTVEGG-----KTFVADAVVVAVPLGVLKARTIKFEPR 306 (506)
Q Consensus 238 ~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v-~V~~~~G-----~~i~ad~VI~a~~~~~~~~~~~~~~~~ 306 (506)
++.||++.|+++|.+ |++|+++++|++|..+++++ .|...+| +++.||+||+|+|+..+..++. .+.
T Consensus 226 ~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~--~~~ 303 (492)
T TIGR02733 226 HLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLG--PLG 303 (492)
T ss_pred eecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcC--ccc
Confidence 799999999999864 78999999999999887754 2444443 5789999999999988876432 256
Q ss_pred CChHHHHHHHhcCCcc-ccEEEEEeCCCCCC--CCCcceeecCCCC-c-ce--eeeccccCCCceEEEEEeccch-----
Q 010587 307 LPDWKEAAIDDLGVGI-ENKIIMHFDKVFWP--NVEFLGVVSDTSY-G-CS--YFLNLHKATGHCVLVYMPAGQL----- 374 (506)
Q Consensus 307 lp~~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~g~~~~~~~-~-~~--~~~~~~~~~~~~~l~~~~~~~~----- 374 (506)
+|+...+.+..+.+.+ ...+++.++....+ .......+..... + .. ...+...|+|+..++..+....
T Consensus 304 ~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~ 383 (492)
T TIGR02733 304 LPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSS 383 (492)
T ss_pred CCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcC
Confidence 7777777777787765 34677888763211 1111112211110 0 00 0112234556766643332221
Q ss_pred --hHHhhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEecc----cCCCCC-CCc-ccccCC-CCCChHHHHHhcCCCCceE
Q 010587 375 --ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH----WGTDAN-SLG-SYSYDT-VGKSHDLYERLRIPVDNLF 445 (506)
Q Consensus 375 --~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~----w~~~~~-~~g-~~~~~~-~~~~~~~~~~~~~p~~~l~ 445 (506)
..+|.+. ++++.+.+++.|++++|++.+.+...... |..... ..| .|.... ..+.....+..++|++|||
T Consensus 384 ~~~~~y~~~-k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLy 462 (492)
T TIGR02733 384 LDEEDYTAK-KKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLW 462 (492)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeE
Confidence 1234333 56688999999999999988766544322 221111 122 222221 3332222233478999999
Q ss_pred eeccccCCcCcchhhHHHHHHHHHHHHHHHH
Q 010587 446 FAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 476 (506)
Q Consensus 446 ~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~ 476 (506)
+||++++++ +++-|++.||+.+|+.|++.
T Consensus 463 l~G~~~~pG--~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 463 LCGDSIHPG--EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred EecCccCCC--CcHHHHHHHHHHHHHHHhhc
Confidence 999998763 58889999999999998753
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=1.8e-31 Score=273.91 Aligned_cols=423 Identities=17% Similarity=0.132 Sum_probs=231.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCe------
Q 010587 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL------ 104 (506)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~------ 104 (506)
|||||||++||+||.+|+++|++|+|+|+++++||+++|.+.+|+.||.|++++.. ...+.++++++|+++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~---~~~~~~l~~~lg~~l~~~l~~ 77 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM---PEALEELFALAGRDLADYVEL 77 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc---ccHHHHHHHHcCCChhheEEE
Confidence 69999999999999999999999999999999999999999999999999999862 245677888887532
Q ss_pred eecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHH-HHHHhh------------
Q 010587 105 YRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE-TDKVRE------------ 171 (506)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------ 171 (506)
.+......+.+.++................. .+++. .......+.+.+..+... ......
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~--~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (502)
T TIGR02734 78 VPLDPFYRLCWEDGSQLDVDNDQEELEAQIA--RFNPG-----DVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRA 150 (502)
T ss_pred EECCCceEEECCCCCEEEecCCHHHHHHHHH--HhCcc-----cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhH
Confidence 2222222222221110000000000000000 00000 000011111111111100 000000
Q ss_pred ------cCCCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhhhhcccCCcccccccccc-cccccCCCccccccchH
Q 010587 172 ------EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD-KEELLPGGHGLMVRGYL 244 (506)
Q Consensus 172 ------~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~G~~ 244 (506)
......++.+++.++ +..+.++.++.....+++.++.+.+..... ......++.+++.+|++
T Consensus 151 ~~~~~~~~~~~~s~~~~~~~~-----------~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~ 219 (502)
T TIGR02734 151 DLPQLLALLAWRSLYSKVARF-----------FSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTG 219 (502)
T ss_pred hhHhhhhccCcCCHHHHHHhh-----------cCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHH
Confidence 001122333333221 222333333332233455555444432211 11122355667899999
Q ss_pred HHHHHHhc-----cCCeeeCCeeEEEEEcCCc-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhc
Q 010587 245 PVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 318 (506)
Q Consensus 245 ~l~~~l~~-----g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 318 (506)
.++++|.+ |++|+++++|++|+.++++ +.|++.+|++++||.||+|+++..+...++. .+..++...+.++.+
T Consensus 220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 298 (502)
T TIGR02734 220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLP-NHPRRRYPAARLSRK 298 (502)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcC-ccccccccccccccC
Confidence 99998854 8899999999999988776 4688889888999999999998766543332 112222333444555
Q ss_pred CCc-cccEEEEEeC---CCCCCCCCcc------------------eeecCCCCcc----eeeeccccCCCceEEEEEecc
Q 010587 319 GVG-IENKIIMHFD---KVFWPNVEFL------------------GVVSDTSYGC----SYFLNLHKATGHCVLVYMPAG 372 (506)
Q Consensus 319 ~~~-~~~~v~~~~~---~~~~~~~~~~------------------g~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 372 (506)
.+. ...++++.++ .. ++..... |.+.....+. ...++...|+|+..+.+++..
T Consensus 299 ~~s~s~~~~~lgl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~ 377 (502)
T TIGR02734 299 RPSPSLFVLYFGLLGVDGH-WPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPV 377 (502)
T ss_pred CcCCeeeEEEEeeccccCc-CCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeC
Confidence 543 4455677776 23 2211000 0011111110 111122345566555444332
Q ss_pred ch----hHHhhcCCHHHHHHHHHHHHHHH-CCCCCCCcEEEecc----cCCCCC-CCc-ccccC-CCCCChHHHHH-hcC
Q 010587 373 QL----ARDIEKMSDEAAANFAFTQLKKI-LPDASSPIQYLVSH----WGTDAN-SLG-SYSYD-TVGKSHDLYER-LRI 439 (506)
Q Consensus 373 ~~----~~~~~~~~~~e~~~~~~~~L~~~-~p~~~~~~~~~~~~----w~~~~~-~~g-~~~~~-~~~~~~~~~~~-~~~ 439 (506)
.. ..+|.+. .+++.+.+++.|++. +|++++.+...... |..... ..| .|.+. ...+....+|. ..+
T Consensus 378 ~~~~~~~~~~~~~-k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t 456 (502)
T TIGR02734 378 PHLGTADVDWSVE-GPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDR 456 (502)
T ss_pred CCCCCCCCCcHHH-HHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCC
Confidence 21 1223332 567899999999998 99987765444311 211111 112 22221 12222223332 357
Q ss_pred CCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHH
Q 010587 440 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 479 (506)
Q Consensus 440 p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~ 479 (506)
|++|||+||++++++ +++.+++.||+.||+.|+++++.
T Consensus 457 ~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 457 KIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred CCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccC
Confidence 899999999998763 58899999999999999986544
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=7e-31 Score=268.04 Aligned_cols=425 Identities=17% Similarity=0.151 Sum_probs=229.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCC---CCchHHHHHhcCCCee
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQ---ENPLAPVISRLGLPLY 105 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~---~~~~~~l~~~lgl~~~ 105 (506)
+||+|||||++||+||.+|+++|++|+||||++.+||+++++..+|+.||.|++++.++.. .+.+.+++..++....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 6999999999999999999999999999999999999999999999999999999765532 2234566766664322
Q ss_pred ecCCCCc--ccccchhhhHHHHHHHHhhhccccceeecCCCCccCH--HHHHHHHHHHHHHHHHHHHHhhcCC-------
Q 010587 106 RTSGDNS--VLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQ--ELVTKVGEAFESILKETDKVREEHD------- 174 (506)
Q Consensus 106 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------- 174 (506)
....... +.+.++....+..++....+... ..+|. ....++.+.+..+............
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~---------~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVHREYDDFIQELV---------AKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLF 151 (493)
T ss_pred ccCCCccEEEECCCCeeEeeecCHHHHHHHHH---------HHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHH
Confidence 1111111 11111100000000000000000 00011 0011111111111111000000000
Q ss_pred ----------------CCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhhhhcccCC-cccccccccc--cccccCCC
Q 010587 175 ----------------EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAAD-AETISLKSWD--KEELLPGG 235 (506)
Q Consensus 175 ----------------~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~--~~~~~~~~ 235 (506)
...++.+++.++ +..+.++.++......++.. .......... ......++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g 220 (493)
T TIGR02730 152 RVFFKHPLACLGLAKYLPQNAGDIARRY-----------IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGG 220 (493)
T ss_pred HHHhhchhhhhHHHHHhhccHHHHHHHh-----------cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccce
Confidence 001222222211 11222222222222222222 1222211111 11123456
Q ss_pred ccccccchHHHHHHHhc-----cCCeeeCCeeEEEEEcCCcE-EEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCCh
Q 010587 236 HGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPD 309 (506)
Q Consensus 236 ~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v-~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~ 309 (506)
..++.||++.++++|.+ |++|+++++|++|+.+++++ .|.+.+|++++||.||+|+++..+...++. ...+++
T Consensus 221 ~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~ 299 (493)
T TIGR02730 221 INYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPK 299 (493)
T ss_pred EecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccch
Confidence 67899999999988854 88999999999999877665 488888988999999999987655432322 123444
Q ss_pred HHHHHHHhcCCc-cccEEEEEeCCCCCCCCCc-ceee-------cCCCCcc-----eeeeccccCCCceEEEEEeccchh
Q 010587 310 WKEAAIDDLGVG-IENKIIMHFDKVFWPNVEF-LGVV-------SDTSYGC-----SYFLNLHKATGHCVLVYMPAGQLA 375 (506)
Q Consensus 310 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~g~~-------~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~ 375 (506)
...+.++.+... ...++++.++....++... .-.+ ....... ...++...|+|+.++.+++.....
T Consensus 300 ~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~ 379 (493)
T TIGR02730 300 KEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSME 379 (493)
T ss_pred hhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChh
Confidence 444455555544 3666788887644321100 0011 0000000 111222345677777665532221
Q ss_pred -------HHhhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEecc----cCCC-CCCCcccccCCCC-CChHHH-HHhcCCC
Q 010587 376 -------RDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH----WGTD-ANSLGSYSYDTVG-KSHDLY-ERLRIPV 441 (506)
Q Consensus 376 -------~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~----w~~~-~~~~g~~~~~~~~-~~~~~~-~~~~~p~ 441 (506)
.+|.+. ++++.+.+++.|++++|++++.+...... |... ....|.|...... +..... +..++|+
T Consensus 380 ~w~~~~~~~y~~~-k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i 458 (493)
T TIGR02730 380 DWQGLSPKDYEAK-KEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAI 458 (493)
T ss_pred hccCCCcHHHHHH-HHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCC
Confidence 123222 56689999999999999987766544322 2110 1123333211100 000111 3467899
Q ss_pred CceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHH
Q 010587 442 DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 477 (506)
Q Consensus 442 ~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l 477 (506)
+|||+||+++.++ +++.+++.||+.||+.|++++
T Consensus 459 ~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 459 PGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 9999999998763 688999999999999998753
No 27
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.5e-32 Score=235.08 Aligned_cols=324 Identities=20% Similarity=0.182 Sum_probs=225.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCeeecC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~~~~ 108 (506)
.+|+|||+||+||+||+-|.++|+.|+||||+.-+|||+.|.+..|..||+|+++|.. .+..+.++++.+.-+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~--~~~~F~~~Ve~~~~~----- 74 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP--RDELFLRAVEALRDD----- 74 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC--CchHHHHHHHHHHhC-----
Confidence 5799999999999999999999999999999999999999999999999999999852 222222332222111
Q ss_pred CCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHc
Q 010587 109 GDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFD 188 (506)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 188 (506)
T Consensus 75 -------------------------------------------------------------------------------- 74 (331)
T COG3380 75 -------------------------------------------------------------------------------- 74 (331)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCchhhhhhhHHHHHHHHHHhhhhcccCCcccccccccccccccCCCccccccchHHHHHHHhccCCeeeCCeeEEEEEc
Q 010587 189 RRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRH 268 (506)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~~~ 268 (506)
++.+. +.+ ..+...-...+ .. -....+.-..||..|++.|+..++|+++++|++|...
T Consensus 75 --------glV~~-----W~~--~~~~~~~~~~~------~~-~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~ 132 (331)
T COG3380 75 --------GLVDV-----WTP--AVWTFTGDGSP------PR-GDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVART 132 (331)
T ss_pred --------Cceee-----ccc--cccccccCCCC------CC-CCCCccccCcchHHHHHHHhccchhhhhhhhhhheec
Confidence 00000 000 00000000000 00 0011145567899999999999999999999999999
Q ss_pred CCcEEEEEcCCc-EEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCCCCCCCCcceeecCC
Q 010587 269 YIGVKVTVEGGK-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT 347 (506)
Q Consensus 269 ~~~v~V~~~~G~-~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 347 (506)
++.|++++++|. ...+|.||+|+|.+++..++-.....+|...+..+..+.|.+...+.+.|..+.-. .+.|+..+.
T Consensus 133 ~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~--P~~G~~vdg 210 (331)
T COG3380 133 DNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDR--PWPGNFVDG 210 (331)
T ss_pred CCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCC--CCCCcccCC
Confidence 999999997664 67899999999998877655433456788888999999999999888998865522 233433333
Q ss_pred CCcceeeec----cccCCCceEEEEEeccchhHHhhcCCHHHHHHHHHHHHHHHCC-CCCCCcEEEecccCCCCCCCccc
Q 010587 348 SYGCSYFLN----LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP-DASSPIQYLVSHWGTDANSLGSY 422 (506)
Q Consensus 348 ~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p-~~~~~~~~~~~~w~~~~~~~g~~ 422 (506)
...-..-.+ .+.+ ...++++....+++....+.++++.+..+....+.+.+ .+.+|.....++|.. +.+.-
T Consensus 211 ~~laWla~d~sK~g~~p-~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrY---A~P~~ 286 (331)
T COG3380 211 HPLAWLARDASKKGHVP-DGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRY---AIPND 286 (331)
T ss_pred CeeeeeeccccCCCCCC-cCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhcccc---ccccc
Confidence 221111111 1222 33478888889999999999999888777777777776 567788888899963 11111
Q ss_pred ccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHH
Q 010587 423 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 477 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l 477 (506)
....+ +....+-.+||+||||++. |-+|||+.||..+|++|++.|
T Consensus 287 ~~~~~-------~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 287 AVAGP-------PLDADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred cccCC-------ccccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 11100 1111345699999999876 899999999999999998753
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=5.5e-27 Score=217.26 Aligned_cols=409 Identities=19% Similarity=0.206 Sum_probs=257.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCc--EEEEeeCCCCCeeEEe-ecCCCcEeecCCceeeCCCC-CCchHHHHHhcC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFK--VVLLESRDRVGGRVHT-DYSFGFPVDLGASWLHGVCQ-ENPLAPVISRLG 101 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~--V~vlE~~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~-~~~~~~l~~~lg 101 (506)
....+|+|||||+|||+|||+|++.+-+ |+|+|+.+|+||+++| ...+|+.||.|+.-+.+... .-.+..++.+||
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 3578999999999999999999999765 5669999999999999 66678999999998865432 125789999999
Q ss_pred CCee--ecCCC-----CcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHH-hhcC
Q 010587 102 LPLY--RTSGD-----NSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV-REEH 173 (506)
Q Consensus 102 l~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 173 (506)
++.. +.+.. +.+.|..+.....++..... .++ .+++ .....+..++....+- ....
T Consensus 89 l~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s-------~~~-----~l~p----~~k~L~~a~l~e~fr~~~~~~ 152 (491)
T KOG1276|consen 89 LEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGS-------LKF-----SLQP----FGKPLLEAFLRELFRKKVSDP 152 (491)
T ss_pred ccceeeecCCCChhhhheeeccCcccccCCcccccc-------ccc-----ccCc----ccchhHHHHHhhhccccCCCC
Confidence 9632 22211 11222222111111110000 000 0000 0011122222222222 2345
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccc-ccc--------cC----------
Q 010587 174 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK-EEL--------LP---------- 233 (506)
Q Consensus 174 ~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~--------~~---------- 233 (506)
..+.|++++++ ++|++++.++++.++ ++.++.+++++|+..... .+. +.
T Consensus 153 ~~dESV~sF~~-----------RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~ 221 (491)
T KOG1276|consen 153 SADESVESFAR-----------RRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARK 221 (491)
T ss_pred CccccHHHHHH-----------HhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Confidence 56789999876 568899999999997 789999999999874321 000 00
Q ss_pred -----------------CCccccccchHHHHHHHhcc-----CCeeeCCeeEEEEEc-CCcEEEEEc--CCc-EEEcCEE
Q 010587 234 -----------------GGHGLMVRGYLPVINTLAKG-----LDIRLGHRVTKITRH-YIGVKVTVE--GGK-TFVADAV 287 (506)
Q Consensus 234 -----------------~~~~~~~~G~~~l~~~l~~g-----~~i~~~~~V~~I~~~-~~~v~V~~~--~G~-~i~ad~V 287 (506)
-..+.+.+|++.+.+++.++ +.|.+.-++..+... .+.|.+++. ++. ....+++
T Consensus 222 ~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~ 301 (491)
T KOG1276|consen 222 RTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYD 301 (491)
T ss_pred cCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeecccc
Confidence 01234778999999998763 467788888887654 355765554 443 3455556
Q ss_pred EEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEEEeCCC-CCCCCCcceeecCC--CCc----ceeeeccccC
Q 010587 288 VVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV-FWPNVEFLGVVSDT--SYG----CSYFLNLHKA 360 (506)
Q Consensus 288 I~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~g~~~~~--~~~----~~~~~~~~~~ 360 (506)
..+.|...+..+ .+.+.+....++..++|.++..|.+.|... .-.....+|.+.+. ... -..|+...-+
T Consensus 302 ~~t~~~~k~a~l----l~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp 377 (491)
T KOG1276|consen 302 AATLPAVKLAKL----LRGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFP 377 (491)
T ss_pred ccccchHHhhhh----ccccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCC
Confidence 668888776544 345556667888899999988888888653 22233445666552 111 0223222111
Q ss_pred --CCceEEEEEeccchhHH--hhcCCHHHHHHHHHHHHHHHCCCCCCCcEEEecccCCCCCCCcccccCCCCCCh---HH
Q 010587 361 --TGHCVLVYMPAGQLARD--IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH---DL 433 (506)
Q Consensus 361 --~~~~~l~~~~~~~~~~~--~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~---~~ 433 (506)
.+...+++++.+.+... ....+++|+++.+.++|++++.--.+|....++.|.. +.++|. +|+.+ ..
T Consensus 378 ~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~---ciPqy~---vGh~~~le~a 451 (491)
T KOG1276|consen 378 DRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKN---CIPQYT---VGHDDVLEAA 451 (491)
T ss_pred CCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhh---ccccee---cchHHHHHHH
Confidence 12225555555544332 3456899999999999999997555676666666743 556665 44432 22
Q ss_pred HHHhcC-CCCceEeeccccCCcCcchhhHHHHHHHHHHHHHH
Q 010587 434 YERLRI-PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 474 (506)
Q Consensus 434 ~~~~~~-p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~ 474 (506)
...+.+ +..+|+++|.++.. -.+..++.||.++|.+++
T Consensus 452 ~~~l~~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 452 KSMLTDSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred HHHHHhCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 222222 23599999999765 577889999999998764
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.2e-26 Score=234.62 Aligned_cols=257 Identities=25% Similarity=0.236 Sum_probs=138.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcC-CCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPLY 105 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-l~~~ 105 (506)
+.+||||||||++||+||.+|+++|++|+||||++++||+++|.+..|+.||+|++++... ....++++++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~----~~~~~~~~l~~l~~~ 77 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMP----DPGPLFRELGNLDAD 77 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecC----chHHHHHHhccCccc
Confidence 4699999999999999999999999999999999999999999999999999999887643 2235555555 4321
Q ss_pred -----ecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH-HhhcCCC----
Q 010587 106 -----RTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK-VREEHDE---- 175 (506)
Q Consensus 106 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 175 (506)
.........+.++.......+..........+ .+........+...+.+....... .......
T Consensus 78 ~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (487)
T COG1233 78 GLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESL-------EPGDGEALARYLRLLARLYELLAALLLAPPRSELLL 150 (487)
T ss_pred ceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhh-------CcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhh
Confidence 11111111111111100000000000000000 000000011111111111111110 0000000
Q ss_pred -CCCHHHHHHH---HHccCc-hhhhhhhHHHHHHHHHHhhhhcccCCccccc-ccccccccccCCCccccccchHHHHHH
Q 010587 176 -DMSIQRAISI---VFDRRP-ELRLEGLAHKVLQWYLCRMEGWFAADAETIS-LKSWDKEELLPGGHGLMVRGYLPVINT 249 (506)
Q Consensus 176 -~~s~~~~~~~---~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~G~~~l~~~ 249 (506)
......++.. ...... .+... |..+.++..+.......+.++...+ +...........+..+++|||+.|+++
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~a 229 (487)
T COG1233 151 VPDTPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDA 229 (487)
T ss_pred ccccHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHH
Confidence 0111111110 000000 01111 3333333333322111112333332 222223344566778999999999999
Q ss_pred Hhc-----cCCeeeCCeeEEEEEcCCc-EEEEEcCCcEEEcCEEEEecChhh
Q 010587 250 LAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 250 l~~-----g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
|.+ |++|+++++|++|..++++ +++++.+|+.+++|.||+++.+..
T Consensus 230 L~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~ 281 (487)
T COG1233 230 LAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPAL 281 (487)
T ss_pred HHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhh
Confidence 975 9999999999999998875 678888887899999999999843
No 30
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.94 E-value=3.2e-26 Score=206.31 Aligned_cols=286 Identities=17% Similarity=0.151 Sum_probs=194.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeec----CCCcEeecCCceeeCCCCCCchHHHHHhcCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY----SFGFPVDLGASWLHGVCQENPLAPVISRLGL 102 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl 102 (506)
++.+|+|||+|+|||||||.|++. ++|+|||+.+++||+++|.. ..|..+|.|.+.+... .+.++.+|++++|.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~-tYpnl~~Lf~~iGv 84 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNER-TYPNLTRLFKTIGV 84 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCC-CcchHHHHHHHcCC
Confidence 578999999999999999999876 79999999999999999984 3467899999987642 56789999999999
Q ss_pred CeeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 010587 103 PLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRA 182 (506)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 182 (506)
++.....+..+..+++.. ..+ .....-.++.+..+.+.+.....+.+.+.-......+.......++++.+|
T Consensus 85 ~t~as~Msf~v~~d~ggl--Ey~------g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~ 156 (447)
T COG2907 85 DTKASFMSFSVSLDMGGL--EYS------GLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQY 156 (447)
T ss_pred CCcccceeEEEEecCCce--eec------cCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHH
Confidence 987766666555543221 000 000000112222222222222222221111111111222234567888888
Q ss_pred HHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCcccccccccc------c----cc-ccCCCccccccchHHHHHHH
Q 010587 183 ISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD------K----EE-LLPGGHGLMVRGYLPVINTL 250 (506)
Q Consensus 183 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~------~----~~-~~~~~~~~~~~G~~~l~~~l 250 (506)
+ +.++++..+.+.++.|+ .+.+..+..+++..-.. . .. ....-+..+.||...-++.|
T Consensus 157 L----------~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~l 226 (447)
T COG2907 157 L----------KQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRL 226 (447)
T ss_pred H----------HhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHH
Confidence 5 45789999999999997 56777776666532111 0 01 11223456889999999999
Q ss_pred hccC--CeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcCCccccEEEE
Q 010587 251 AKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIM 328 (506)
Q Consensus 251 ~~g~--~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~v~~ 328 (506)
.+++ +|.++++|..|..-.+++.|+..+|++-.+|.||+|+.+.+...++.. + ++..++.+..+.|.... ..+
T Consensus 227 aa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e---~-sp~e~qll~a~~Ys~n~-aVl 301 (447)
T COG2907 227 AADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDE---P-SPEERQLLGALRYSANT-AVL 301 (447)
T ss_pred hccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCC---C-CHHHHHHHHhhhhhhce-eEE
Confidence 9877 499999999999999999999999999999999999999887665432 3 35556688999996544 555
Q ss_pred EeCCCCCCC
Q 010587 329 HFDKVFWPN 337 (506)
Q Consensus 329 ~~~~~~~~~ 337 (506)
+-|.++.|.
T Consensus 302 htd~~lmPr 310 (447)
T COG2907 302 HTDASLMPR 310 (447)
T ss_pred eeccccccc
Confidence 666666653
No 31
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.90 E-value=6.8e-22 Score=184.37 Aligned_cols=238 Identities=19% Similarity=0.163 Sum_probs=140.8
Q ss_pred CCCccccccchHHHHHHHhc-----cCCeeeCCeeEEEEEcCCcEE-EEEcCCcEEEcCEEEEecChhhhhcCcccccCC
Q 010587 233 PGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 306 (506)
Q Consensus 233 ~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~i~ad~VI~a~~~~~~~~~~~~~~~~ 306 (506)
.+++.++.|||+.+.+++++ |.+|++++.|++|..+++++. |..+||+++.+..||+++.+..+...++. ...
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp-~e~ 331 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP-GEA 331 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC-Ccc
Confidence 46788999999999999865 779999999999999887754 99999999999999999987665422221 234
Q ss_pred CChHHHHHHHhcCCc-cccE----EEEEeC----CCCCCCCCc--------------------ceeecCCC----Cccee
Q 010587 307 LPDWKEAAIDDLGVG-IENK----IIMHFD----KVFWPNVEF--------------------LGVVSDTS----YGCSY 353 (506)
Q Consensus 307 lp~~~~~~~~~~~~~-~~~~----v~~~~~----~~~~~~~~~--------------------~g~~~~~~----~~~~~ 353 (506)
||... .+.++.+. +..+ .++... .+. ++.+. -|.-.... .+.+.
T Consensus 332 LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~pl-ph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~ 408 (561)
T KOG4254|consen 332 LPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPL-PHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS 408 (561)
T ss_pred CCchh--hhhhcccccccccccCcceeecCCCCCCCC-CccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence 55543 23333221 1111 122211 011 11000 01100000 11223
Q ss_pred eeccccCCCceEEEEEeccchhHHhhcCC-------HHHHHHHHHHHHHHHCCCCCCCcEEEecccCCCC-----CCCcc
Q 010587 354 FLNLHKATGHCVLVYMPAGQLARDIEKMS-------DEAAANFAFTQLKKILPDASSPIQYLVSHWGTDA-----NSLGS 421 (506)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~-----~~~g~ 421 (506)
.++...+++.+++..++.+.. ..|.+.. ++++.+.+++.+.+++|++.+.+.......+-+. ...|.
T Consensus 409 lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn 487 (561)
T KOG4254|consen 409 LDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGN 487 (561)
T ss_pred cCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCc
Confidence 333445677888877766654 3343332 4568889999999999998876654443321110 01122
Q ss_pred ccc-----CC--CCCChHHHHHhcCCCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHH
Q 010587 422 YSY-----DT--VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 479 (506)
Q Consensus 422 ~~~-----~~--~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~ 479 (506)
+.. +. ....-..+..+++|++|||+||+.+.++ |++-++. |..+|...+.....
T Consensus 488 ~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 488 IFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred ccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhh
Confidence 111 10 1111223445689999999999998874 4554442 88888877666544
No 32
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1.6e-22 Score=195.38 Aligned_cols=421 Identities=20% Similarity=0.148 Sum_probs=219.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecC-CCcEeecCCceeeCCCCCCchHHHHHhcCCCeeec
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT 107 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~~~~ 107 (506)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.|.+. +|...|+|.|.|.+ .+.+++.++++++.+..-.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~--~Y~n~~~ll~~~~~~~~~~ 78 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFG--CYYNLLTLLKELPIEDRLQ 78 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEech--hHHHHHHHhhhCCchheee
Confidence 47999999999999999999999999999999999999999654 68899999999975 4678999999998873211
Q ss_pred CCCCcccc-cc-hhhhHHHHHHHHhh--hccccceeecCCCCccCHHHHHHHHHHHHHHHHH-H-HHHhhcCCCCCCHHH
Q 010587 108 SGDNSVLY-DH-DLERVLKTVVVSLI--QANLCYALFDMDGNQVPQELVTKVGEAFESILKE-T-DKVREEHDEDMSIQR 181 (506)
Q Consensus 108 ~~~~~~~~-~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~s~~~ 181 (506)
...-...+ .. .......+ +.... +.......+... ..++.... .....++... + ........+.+|+.+
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~-~~~~~~p~p~~~~~~~l~~-~~~~~~~~---~~~~~~l~~~~~g~~~~~~eld~~s~~d 153 (485)
T COG3349 79 LREHTKTFVGSGTRPGAIGR-FARPDAPQPTNGLKAFLRL-PQLPRREK---IRFVLRLGDAPIGADRSLRELDKISFAD 153 (485)
T ss_pred hHhhhhhhcccCCCCCcccc-cccCCCCCcchhhhhhhhc-cccCHHHH---hHHhhccccccchhHHHHHHHhcccHHH
Confidence 11111111 00 00000000 00000 000000000000 01111100 0111111111 1 122234566778888
Q ss_pred HHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccc----ccccC-CC--ccccccch-----HHHHH
Q 010587 182 AISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK----EELLP-GG--HGLMVRGY-----LPVIN 248 (506)
Q Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~----~~~~~-~~--~~~~~~G~-----~~l~~ 248 (506)
|+... +.........+.++ .......++..|...+.. ..+.. +. ...+.++. ..+.+
T Consensus 154 ~l~~~----------g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~ 223 (485)
T COG3349 154 WLKEK----------GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTE 223 (485)
T ss_pred HHHHh----------CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhh
Confidence 87642 12222222223332 111223333444322210 00001 00 11122222 23445
Q ss_pred HHh-ccCCeeeCCeeEEEEEcCC-----cEEEEEcCCc---EEEcCEEEEecChhhhhcCcccccCCCChHHHHHHHhcC
Q 010587 249 TLA-KGLDIRLGHRVTKITRHYI-----GVKVTVEGGK---TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG 319 (506)
Q Consensus 249 ~l~-~g~~i~~~~~V~~I~~~~~-----~v~V~~~~G~---~i~ad~VI~a~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 319 (506)
.+. .|.+++++.+|+.|..... .+.+... +. ...++.|+.+.....+...+...-+ +......+..+.
T Consensus 224 yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~--~~~~f~~ly~l~ 300 (485)
T COG3349 224 YIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWP--KWSNFDGLYGLR 300 (485)
T ss_pred hccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCccccc--cccccccccccc
Confidence 554 4889999999999987552 1223322 43 3345555555555554433221111 122334556667
Q ss_pred CccccEEEEEeCCCC-CCCC---------------CcceeecCCCCcceeeeccccCCCc-eEEEEEeccchhHHhhcCC
Q 010587 320 VGIENKIIMHFDKVF-WPNV---------------EFLGVVSDTSYGCSYFLNLHKATGH-CVLVYMPAGQLARDIEKMS 382 (506)
Q Consensus 320 ~~~~~~v~~~~~~~~-~~~~---------------~~~g~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~ 382 (506)
..+..++.+.++... +.+. ...|.+......+..+. .++. +.+-.... .+..+...+
T Consensus 301 ~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~----e~g~~~~le~~~~--~~~~~~~~~ 374 (485)
T COG3349 301 LVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYV----EPGAGCYLEKVLA--PGWPFLFES 374 (485)
T ss_pred ccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhc----cccchhhhhhhhc--ccccccccc
Confidence 778888888887422 2221 01111111110001000 1111 11110000 122345556
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC-cEEEecccCCCCCCCcccccCCCCCChHHHHHhcCCCCceEeeccccCCcCcchhhH
Q 010587 383 DEAAANFAFTQLKKILPDASSP-IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHG 461 (506)
Q Consensus 383 ~~e~~~~~~~~L~~~~p~~~~~-~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~eg 461 (506)
.+++.....+++...+|...+. ....+.+-.. +....+++. .+++|...+|.+|++++||++-..+-++||+
T Consensus 375 ~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q------~~~~~~pgs-~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~ 447 (485)
T COG3349 375 DEAIVATFEKELYELVPSLAEAKLKSSVLVNQQ------SLYGLAPGS-YHYRPEQKTPIPNLLLAGDYTKQPYLGSMEG 447 (485)
T ss_pred hhhHHHHHHHHhhhcCCchhcccccccceeccc------cccccCCCc-cccCCCCCCCccchhhccceeecCCcCccch
Confidence 7888999999999888754332 1111111111 111112222 4678888999999999999998877799999
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 010587 462 AFSTGLMAAEDCRMRVLERYG 482 (506)
Q Consensus 462 A~~sG~~aA~~i~~~l~~~~~ 482 (506)
|..||++||+.|+..+...-.
T Consensus 448 A~~sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 448 ATLSGLLAANAILDNLGHHAP 468 (485)
T ss_pred hhhhHHHHHHHHHHhhhhcCc
Confidence 999999999999999887554
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.79 E-value=4.2e-18 Score=164.46 Aligned_cols=229 Identities=16% Similarity=0.167 Sum_probs=142.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcE-eecCCceeeCCCCCCchHHHHHhcC-CCee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLG-LPLY 105 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg-l~~~ 105 (506)
++||+|||||++||++|++|++.|.+|+|+|+++++||.|.+....|.. .+.|+|+++. ....+.+++.++. ...+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t--~~~~v~~~~~~~~~~~~~ 78 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT--NNQYVWDYISPFFELNNY 78 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec--CcHHHHHHHHhhccccce
Confidence 4799999999999999999999999999999999999999987766654 5899998873 3345566655542 2111
Q ss_pred ecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCH--HHHHHHH--HHHHHHHHHHHHHhhc--CCCCCCH
Q 010587 106 RTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQ--ELVTKVG--EAFESILKETDKVREE--HDEDMSI 179 (506)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~s~ 179 (506)
. ......+.+. ..++|. .....+. .....+...+...... .....++
T Consensus 79 ~--~~~~~~~~g~-------------------------~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 131 (377)
T TIGR00031 79 Q--HRVLALYNNL-------------------------DLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEEL 131 (377)
T ss_pred e--EEEEEEECCe-------------------------EEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCH
Confidence 1 0001111111 111111 1111100 0111111222111110 1111345
Q ss_pred HHHHHHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCccccccccccc---------ccccCCCccccccchHHHHHH
Q 010587 180 QRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK---------EELLPGGHGLMVRGYLPVINT 249 (506)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~---------~~~~~~~~~~~~~G~~~l~~~ 249 (506)
+++.+.. ...+++.+.+.++.+. ...|+.++++++..+... ..+....+++|++|+..+.++
T Consensus 132 ~e~~d~~--------~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ 203 (377)
T TIGR00031 132 QEIADPD--------IQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEK 203 (377)
T ss_pred HHHHHHH--------HHHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHH
Confidence 5554311 2458888888888887 678999999998775431 112233456899999999999
Q ss_pred Hhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 250 LAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 250 l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
|.+ +++|++|+.+..++.+++++.+. .+ .+. +.||.|.|++.+.
T Consensus 204 ml~~~~i~v~l~~~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 204 MLDHPLIDVKLNCHINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred HHhcCCCEEEeCCccceeeccccceeec--cc-ccc-CcEEEecCchHHH
Confidence 986 59999999888887655544442 23 233 8899999998754
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.73 E-value=1.8e-16 Score=156.86 Aligned_cols=230 Identities=14% Similarity=0.158 Sum_probs=132.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCC--------------------cEeecCCcee
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG--------------------FPVDLGASWL 84 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g--------------------~~~d~G~~~~ 84 (506)
|.+.+||+|||+|++|+.+|..|+++|.+|+++|+++.+||+.+|....+ +.+|+.++.+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 45679999999999999999999999999999999999999999864322 2344455544
Q ss_pred eCCCCCCchHHHHHhcCCCee---ecCCCCcccc-cchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHH-----
Q 010587 85 HGVCQENPLAPVISRLGLPLY---RTSGDNSVLY-DHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKV----- 155 (506)
Q Consensus 85 ~~~~~~~~~~~l~~~lgl~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 155 (506)
. ....+.+++.+.++.-+ +.-. ....+ .++. ....|....+.+
T Consensus 81 ~---~~G~lv~lL~~s~v~ryleF~~l~-g~~v~~~~g~------------------------~~~vP~s~~~~~~s~ll 132 (443)
T PTZ00363 81 M---ASGELVKILLHTDVTRYLEFKVID-GSYVYQKEGK------------------------IHKVPATDMEALSSPLM 132 (443)
T ss_pred e---cCChHHHHHhhcCccceeeeEEec-eEEEEecCCe------------------------EEECCCCHHHHhhCCCc
Confidence 3 33566677777666421 1111 11111 1110 111111111100
Q ss_pred ----HHHHHHHHHHHHHHhhc--------CCCCCCHHHHHHHHHccCchhhhhhhHHHHHH---HHHHhh-hhcccCCcc
Q 010587 156 ----GEAFESILKETDKVREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQ---WYLCRM-EGWFAADAE 219 (506)
Q Consensus 156 ----~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~-~~~~~~~~~ 219 (506)
...+.+++..+...... ..+..++.+++..+ ++.+...+ .++... ...+...+.
T Consensus 133 ~l~eKr~l~kfl~~v~~~~~~~~~~~~~~~~d~~T~~d~L~~~----------~ls~~~~d~i~~~ial~~~~~~~~~pa 202 (443)
T PTZ00363 133 GFFEKNRCKNFLQYVSNYDENDPETHKGLNLKTMTMAQLYKKF----------GLEDNTIDFVGHAVALYTNDDYLNKPA 202 (443)
T ss_pred chhhHHHHHHHHHHHHhhccCChhhhcccCcccCCHHHHHHHh----------CCCHHHHHHHHHHHHhhcccccccCCH
Confidence 11233333333322221 12356788876542 34444333 333322 111212111
Q ss_pred ccccccc---cc--ccccCCCccccccchHHHHHHHh-----ccCCeeeCCeeEEEEEcCC-c-EEEEEcCCcEEEcCEE
Q 010587 220 TISLKSW---DK--EELLPGGHGLMVRGYLPVINTLA-----KGLDIRLGHRVTKITRHYI-G-VKVTVEGGKTFVADAV 287 (506)
Q Consensus 220 ~~s~~~~---~~--~~~~~~~~~~~~~G~~~l~~~l~-----~g~~i~~~~~V~~I~~~~~-~-v~V~~~~G~~i~ad~V 287 (506)
..++..+ .. ..+-.....++.+|++.|++++. .|++++++++|++|+.+++ + +.|++++|++++|+.|
T Consensus 203 ~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~V 282 (443)
T PTZ00363 203 IETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLV 282 (443)
T ss_pred HHHHHHHHHHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEE
Confidence 1111111 00 01111234577899999999996 3889999999999988754 3 5688999999999999
Q ss_pred EEecC
Q 010587 288 VVAVP 292 (506)
Q Consensus 288 I~a~~ 292 (506)
|+...
T Consensus 283 V~~~s 287 (443)
T PTZ00363 283 ICDPS 287 (443)
T ss_pred EECcc
Confidence 98544
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.69 E-value=2.8e-17 Score=117.92 Aligned_cols=68 Identities=35% Similarity=0.572 Sum_probs=60.6
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhc
Q 010587 33 VIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (506)
Q Consensus 33 IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (506)
|||||++||+||++|+++|++|+|+|+++++||++++...+|+.+|.|++++.....+.++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 89999999999999999999999999999999999999989999999999998654566788888875
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.68 E-value=2.2e-15 Score=140.98 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=45.7
Q ss_pred cchHHHHHHHhc-----cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecC
Q 010587 241 RGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 292 (506)
Q Consensus 241 ~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~ 292 (506)
...++|+++|.+ |++|+++++|.+|+.++.+..|++.+|++++||.+|+|++
T Consensus 108 dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 108 DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 455667777643 8999999999999999988999999998899999999997
No 37
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.66 E-value=1e-14 Score=145.66 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=59.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCCCCeeEEeec--CCCcEeecCCceeeCCCCCCchHHHHHh
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVISR 99 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~~ 99 (506)
..+.+|+|||||+|||+||++|++. |.+|+|||+++.+||++.+.. .+|+.++.|.+.. .....+++++++
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~~---~~y~~l~~ll~~ 96 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREME---NHFECLWDLFRS 96 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCcc---chHHHHHHHHHh
Confidence 4468999999999999999999996 689999999999999998744 6789998886642 344577888877
Q ss_pred c
Q 010587 100 L 100 (506)
Q Consensus 100 l 100 (506)
+
T Consensus 97 i 97 (576)
T PRK13977 97 I 97 (576)
T ss_pred c
Confidence 6
No 38
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.56 E-value=8.6e-13 Score=131.53 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=42.2
Q ss_pred HHHHHh-ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 246 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 246 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
+.+.+. .|++++++++|++++.++++++|++.+|+++++|.||.|.+...
T Consensus 119 L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 119 LWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 344443 38899999999999998888999888888999999999999755
No 39
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.3e-13 Score=116.17 Aligned_cols=68 Identities=25% Similarity=0.459 Sum_probs=56.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~ 104 (506)
...||+|||||+|||+|||+|+++|.||+|||++..+||.++ .|++.|+..--..+...+++++|++.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~y 96 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRY 96 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCcc
Confidence 368999999999999999999999999999999999999764 46666654444566777888888763
No 40
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.51 E-value=7.2e-13 Score=130.53 Aligned_cols=44 Identities=34% Similarity=0.342 Sum_probs=37.3
Q ss_pred ccCCeeeCCeeEEEEEcCCcEE-EEEcCCcEEEcCEEEEecChhhh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
.|++|+.+++|++|+.++++|+ |.+.+|+ +.||.||+|+++...
T Consensus 160 ~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 160 AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred hhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence 3899999999999999999998 9999995 999999999998653
No 41
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.50 E-value=6.9e-12 Score=124.94 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=42.4
Q ss_pred HHHHHhc-c-CCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 010587 246 VINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 246 l~~~l~~-g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
+.+.+.+ | ++|+++++|++|+.+++++.|++++|+++++|.||.|.+....
T Consensus 112 L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 112 LWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 4444433 5 7999999999999988889999999989999999999987543
No 42
>PRK09126 hypothetical protein; Provisional
Probab=99.50 E-value=3.6e-12 Score=127.16 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=42.9
Q ss_pred HHHHHh--ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 010587 246 VINTLA--KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 246 l~~~l~--~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
+.+.+. .|++|+.+++|++++.+++.+.|++++|++++||.||.|.+....
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 445543 388999999999999888888898889989999999999997553
No 43
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.50 E-value=5e-12 Score=125.67 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=38.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+++||+|||||+||++||+.|+++|++|+|+|+++.+|-..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~ 42 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP 42 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc
Confidence 57999999999999999999999999999999999999654
No 44
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.49 E-value=1.7e-11 Score=123.27 Aligned_cols=39 Identities=26% Similarity=0.555 Sum_probs=35.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
++..+||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 456799999999999999999999999999999998754
No 45
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.48 E-value=2.2e-12 Score=129.32 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=36.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
+++||+|||||++|++||+.|+++|++|+|+|+.+.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999998887754
No 46
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.48 E-value=8.1e-12 Score=125.08 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=44.0
Q ss_pred HHHHHhc-cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
+.+.+.+ |++|+.+++|++|+.+++++.|++.+|++++||.||.|.+.....+
T Consensus 118 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR 171 (405)
T PRK05714 118 LLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVR 171 (405)
T ss_pred HHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhH
Confidence 4444443 7899999999999998888999999998999999999999766443
No 47
>PRK10015 oxidoreductase; Provisional
Probab=99.47 E-value=1e-11 Score=124.26 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=35.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
.++||+|||||++|++||+.|++.|++|+|+|+.+.+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 469999999999999999999999999999999877653
No 48
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.46 E-value=2.3e-11 Score=120.66 Aligned_cols=43 Identities=33% Similarity=0.380 Sum_probs=38.8
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
.|++++++++|++|+.+++++.|++.+| ++++|.||+|++...
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred CCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 4899999999999999888888998888 799999999999754
No 49
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.46 E-value=1.8e-11 Score=121.74 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=37.4
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|++++.+++|++|+.+++++.|++.+| ++.+|+||+|++..
T Consensus 158 ~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 158 HGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred cCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 4899999999999998888888888777 79999999999864
No 50
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.45 E-value=2.7e-11 Score=120.21 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=44.2
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
+.+++.+ +++++++++|++++.++++++|++++|+++++|.||.|.+.....+
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 3444433 6899999999999998888999999999999999999999866543
No 51
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.45 E-value=3e-11 Score=120.47 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
+.+.+.+ |++++.+++|++++.+++++.|++.+|++++||.||.|.+.....
T Consensus 118 L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 118 LWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchh
Confidence 4454442 789999999999998888888988888899999999999976543
No 52
>PRK08013 oxidoreductase; Provisional
Probab=99.45 E-value=2.9e-11 Score=120.63 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=44.2
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
|.+.+.+ +++++++++|++|+.+++.+.|+..+|++++||.||-|.+.+...+
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR 171 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLR 171 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHH
Confidence 4454443 7899999999999988888999989999999999999999766543
No 53
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.45 E-value=3.8e-11 Score=119.42 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=43.2
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
|.+.+.+ |++++++++|++|+.++++++|++.+|++++||.||.|.+....
T Consensus 111 L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 111 LLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 4455543 78999999999999888889999888888999999999997653
No 54
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.45 E-value=2.1e-11 Score=121.53 Aligned_cols=49 Identities=20% Similarity=0.084 Sum_probs=40.5
Q ss_pred HHHHHhc-c-CCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 246 VINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 246 l~~~l~~-g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
+.+.+.+ | ++++ ++.|++|+.+++.+.|++.+|++++||.||.|.+...
T Consensus 117 L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 117 LWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 4455543 5 7888 9999999988888899998888899999999999754
No 55
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.45 E-value=2.3e-11 Score=121.75 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
|.+.+.+ +++++++++|++|+.+++.+.|++.+|++++||.||.|.+....
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 4455543 68999999999999888888999999999999999999997654
No 56
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.44 E-value=3.2e-11 Score=120.84 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=42.5
Q ss_pred HHHHHh-ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 010587 246 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 246 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
+.+.+. .|++++++++|++|+.+++.+.|++.+|+++++|.||.|.+....
T Consensus 117 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 117 LRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 444443 388999999999999988889999889989999999999987543
No 57
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.44 E-value=3.7e-13 Score=132.05 Aligned_cols=41 Identities=32% Similarity=0.491 Sum_probs=30.0
Q ss_pred cCCeeeCCeeEEEEEcCCc-EEEEEcCCcEEEcCEEEEecCh
Q 010587 253 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 293 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VI~a~~~ 293 (506)
|++|+++++|++|+.++++ +.|.+++++++.||+||+|++-
T Consensus 123 gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 123 GVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp T-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred CCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence 9999999999999998877 7898877779999999999873
No 58
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.44 E-value=2.9e-11 Score=120.03 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=44.3
Q ss_pred HHHHHhc-c-CCeeeCCeeEEEEEcCCcEEEEEc-CCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVE-GGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~~-g-~~i~~~~~V~~I~~~~~~v~V~~~-~G~~i~ad~VI~a~~~~~~~~ 298 (506)
|.+++.+ + ++++++++|+.++.+++.+.|+.. +|++++||.||-|-+.+...+
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR 165 (387)
T COG0654 110 LLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVR 165 (387)
T ss_pred HHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHH
Confidence 4444433 3 799999999999999999888888 999999999999999876554
No 59
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.43 E-value=3e-11 Score=120.31 Aligned_cols=50 Identities=24% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHhc-cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 246 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 246 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
+.+.+.+ +...+++++|++++.+++++.|++.+|++++||.||.|.+...
T Consensus 117 L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 117 LEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 4444443 3334889999999998889999998998999999999999754
No 60
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=3.6e-12 Score=115.20 Aligned_cols=227 Identities=15% Similarity=0.250 Sum_probs=130.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecC--CCc-EeecCCceeeCCCCCCchHHHHHhcC-CC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGF-PVDLGASWLHGVCQENPLAPVISRLG-LP 103 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~-~~d~G~~~~~~~~~~~~~~~l~~~lg-l~ 103 (506)
++|++|||||++|+..|..|++.|.+|+|+|+++++||.|.+..- .|. ..-.|+|.|| ..+..+++.+..+- +.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFH--T~~~~Vwdyv~~F~e~~ 78 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH--TDNKRVWDYVNQFTEFN 78 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceee--cCchHHHHHHhhhhhhh
Confidence 489999999999999999999999999999999999999988554 354 6678999998 34556666665541 11
Q ss_pred eeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 010587 104 LYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAI 183 (506)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 183 (506)
.+. +....+.++....++-. + . .+....+....+..... +...... .....+..++++-.
T Consensus 79 ~Y~---hrVla~~ng~~~~lP~n---l---~---ti~ql~G~~~~p~~a~~-------~i~~~~~-~~~~~~~q~~ee~a 138 (374)
T COG0562 79 PYQ---HRVLALVNGQLYPLPFN---L---N---TINQLFGKNFTPDEARK-------FIEEQAA-EIDIAEPQNLEEQA 138 (374)
T ss_pred hhc---cceeEEECCeeeecccc---H---H---HHHHHhCccCCHHHHHH-------HHHHhhc-cccccchhhhhhHH
Confidence 110 00011111110000000 0 0 00000011111111111 1111110 00111111233222
Q ss_pred HHHHccCchhhhhhhHHHHHHHHHHhh-hhcccCCcccccccccc---------cccccCCCccccccchHHHHHHHhc-
Q 010587 184 SIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD---------KEELLPGGHGLMVRGYLPVINTLAK- 252 (506)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~---------~~~~~~~~~~~~~~G~~~l~~~l~~- 252 (506)
. .-+.+.+.+.++.+. ..-|+.+++++...-.. ..++..-..+.|++|+..+.+.|.+
T Consensus 139 i-----------s~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~h 207 (374)
T COG0562 139 I-----------SLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDH 207 (374)
T ss_pred H-----------HHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcC
Confidence 1 235556666666665 56788888877654322 2223334467899999999999987
Q ss_pred -cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 253 -GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 253 -g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
.++|++||.-..+..... .+.+..||.|-|++.+.
T Consensus 208 p~I~V~Lntd~~~~~~~~~----------~~~~~~VvytG~iD~~F 243 (374)
T COG0562 208 PNIDVRLNTDFFDVKDQLR----------AIPFAPVVYTGPIDAYF 243 (374)
T ss_pred CCceEEecCcHHHHhhhhc----------ccCCCceEEecchHhhh
Confidence 889999998777654322 14556899999988754
No 61
>PRK06847 hypothetical protein; Provisional
Probab=99.43 E-value=5.2e-11 Score=118.13 Aligned_cols=45 Identities=42% Similarity=0.374 Sum_probs=40.2
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
.|++|+++++|++|+.+++++.|++.+|+++.+|.||.|.+....
T Consensus 120 ~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 120 AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 388999999999999888888899999989999999999997653
No 62
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.42 E-value=4.2e-11 Score=119.70 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=42.3
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
+.+.+.+ |++++++++|++|+.+++++.|++++|.++++|.||.|.+...
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 4444443 7899999999999988888999998888899999999999765
No 63
>PRK07588 hypothetical protein; Provisional
Probab=99.40 E-value=2.7e-11 Score=120.78 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=44.4
Q ss_pred HHHHHhccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
|.+++..+++|+++++|++|+.++++|.|++++|+++++|.||.|.+.+...+
T Consensus 109 L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 109 IYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccch
Confidence 33444456899999999999998889999999999999999999999866543
No 64
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.39 E-value=4.4e-11 Score=114.49 Aligned_cols=37 Identities=41% Similarity=0.531 Sum_probs=34.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
+||+|||||++||++|+.|++.|.+|+|+|+++.++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999877654
No 65
>PRK11445 putative oxidoreductase; Provisional
Probab=99.38 E-value=1e-10 Score=114.39 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=39.7
Q ss_pred HHHhccCCeeeCCeeEEEEEcCCcEEEEE-cCCc--EEEcCEEEEecChhhh
Q 010587 248 NTLAKGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLGVL 296 (506)
Q Consensus 248 ~~l~~g~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~i~ad~VI~a~~~~~~ 296 (506)
+....|+++++++.|++|+.+++++.|++ .+|+ +++||.||.|.+....
T Consensus 107 ~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 107 SLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 33345889999999999998888888775 5664 6899999999997654
No 66
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.37 E-value=1.8e-12 Score=111.81 Aligned_cols=68 Identities=28% Similarity=0.465 Sum_probs=44.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~ 104 (506)
.++||+|||||++||+||++|+++|+||+|||++..+||.++ .|++.|+..--+.+...+++++|++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~----------~Gg~lf~~iVVq~~a~~iL~elgi~y 83 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW----------GGGMLFNKIVVQEEADEILDELGIPY 83 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT----------S-CTT---EEEETTTHHHHHHHT---
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc----------ccccccchhhhhhhHHHHHHhCCcee
Confidence 469999999999999999999999999999999999998653 34444432222334566677777653
No 67
>PRK06834 hypothetical protein; Provisional
Probab=99.36 E-value=2.3e-10 Score=116.35 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=42.3
Q ss_pred HHHhc-cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 248 NTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 248 ~~l~~-g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
+.+.+ |++|+++++|++|+.+++++.|++.+|+++++|+||.|.+.....
T Consensus 108 ~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 108 EWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 34433 889999999999999988899988888889999999999976543
No 68
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.35 E-value=1.9e-10 Score=115.97 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=41.9
Q ss_pred HHHHHhc----cCCeeeCCeeEEEEEc-------CCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLAK----GLDIRLGHRVTKITRH-------YIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~~----g~~i~~~~~V~~I~~~-------~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
+.+.+.+ +++++++++|++|+.+ +++++|++.+|++++||.||-|-+.....+
T Consensus 123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 4455543 3789999999999753 456889999999999999999999876543
No 69
>PRK05868 hypothetical protein; Validated
Probab=99.35 E-value=1.2e-10 Score=114.82 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=42.8
Q ss_pred HhccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 250 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 250 l~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
+..|++++++++|++|+.++++++|+.++|++++||.||-|-+.+...+
T Consensus 115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 3458899999999999988888999999999999999999999876544
No 70
>PRK06185 hypothetical protein; Provisional
Probab=99.34 E-value=1.6e-10 Score=115.89 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=34.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
.+++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4679999999999999999999999999999999753
No 71
>PRK06184 hypothetical protein; Provisional
Probab=99.34 E-value=2.3e-10 Score=117.71 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=42.2
Q ss_pred HHHHHhc-cCCeeeCCeeEEEEEcCCcEEEEE---cCCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~V~~---~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
+.+.+.+ |++|+++++|++|+.++++++|+. .++++++||.||.|.+.....+
T Consensus 115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR 171 (502)
T PRK06184 115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVR 171 (502)
T ss_pred HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHH
Confidence 4444443 889999999999999888888776 5566899999999999876543
No 72
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.34 E-value=3.4e-10 Score=111.96 Aligned_cols=52 Identities=2% Similarity=0.050 Sum_probs=42.1
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
|.+++.+ +++++++++|++|+.+++++.|++.++ +++||.||-|-+.+...+
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 110 LLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVR 163 (374)
T ss_pred HHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhH
Confidence 4454443 478999999999998888898988777 899999999999876543
No 73
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.32 E-value=3.8e-11 Score=116.63 Aligned_cols=43 Identities=33% Similarity=0.505 Sum_probs=39.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s 69 (506)
+++||+|||||+.|+++|+.|++.+ .+|+|+||.+.+|--.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 4699999999999999999999987 999999999999877655
No 74
>PRK07190 hypothetical protein; Provisional
Probab=99.32 E-value=3.5e-10 Score=114.93 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=41.2
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
.|++|+++++|++|+.+++++.+++.+|++++|+.||.|.+.....+
T Consensus 122 ~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR 168 (487)
T PRK07190 122 AGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVR 168 (487)
T ss_pred CCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHH
Confidence 38999999999999998888888888888999999999999866543
No 75
>PRK08244 hypothetical protein; Provisional
Probab=99.31 E-value=2e-10 Score=117.90 Aligned_cols=45 Identities=31% Similarity=0.395 Sum_probs=37.2
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEc--CC-cEEEcCEEEEecChhhhh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVE--GG-KTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~--~G-~~i~ad~VI~a~~~~~~~ 297 (506)
|++|+++++|++++.++++++|+.. +| +++++|.||.|.+.....
T Consensus 114 gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 114 GVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 8899999999999988888776653 46 479999999999976543
No 76
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.31 E-value=7.4e-10 Score=110.41 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=35.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (506)
.+++||+|||||++||++||+|++.|.+|+|+|++...+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 467999999999999999999999999999999965444
No 77
>PRK07045 putative monooxygenase; Reviewed
Probab=99.31 E-value=7.8e-10 Score=110.13 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=41.4
Q ss_pred HHHHHh--ccCCeeeCCeeEEEEEcCCc--EEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 246 VINTLA--KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 246 l~~~l~--~g~~i~~~~~V~~I~~~~~~--v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
+.+.+. .|++++++++|++|+.++++ +.|+..+|+++++|.||.|.+.....+
T Consensus 112 L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR 168 (388)
T PRK07045 112 LLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIR 168 (388)
T ss_pred HHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHH
Confidence 444443 26899999999999986655 368888999999999999999876443
No 78
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.31 E-value=6.4e-10 Score=111.47 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=34.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC-CC-cEEEEeeCCCCCe
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRDRVGG 65 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~-~V~vlE~~~~~GG 65 (506)
.+..+||+|||||++|+++||+|++. |. +|+|+|++. +|+
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 34679999999999999999999995 95 899999965 443
No 79
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.31 E-value=6.9e-11 Score=108.93 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=38.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
..+||+|||||++||+||+.|++.|.+|+|+|+++.+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 46999999999999999999999999999999999998764
No 80
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.30 E-value=2.1e-09 Score=108.19 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=35.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
+||+|||||++||++|++|++.|.+|+|+|+...+|..++
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS 40 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETS 40 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhhe
Confidence 4899999999999999999999999999999766665543
No 81
>PRK07236 hypothetical protein; Provisional
Probab=99.30 E-value=5.8e-10 Score=110.90 Aligned_cols=45 Identities=18% Similarity=0.061 Sum_probs=39.7
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
+.+|+++++|++|+.++++++|++++|++++||.||.|-+.+...
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 457999999999999888899999999999999999999876544
No 82
>PRK06753 hypothetical protein; Provisional
Probab=99.29 E-value=3.2e-10 Score=112.32 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=40.2
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~~ 298 (506)
..+|+++++|++|+.+++++.|++.+|+++++|.||-|.+.+...+
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 4579999999999988888999999998999999999999765443
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.29 E-value=8.2e-11 Score=117.22 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=40.8
Q ss_pred HHHHHHh-ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 245 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 245 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
.+.+.+. .|++++++++|++|+.+++++.|.+.+| ++.||.||+|++...
T Consensus 154 aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 154 AMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 3444443 3889999999999998888888888877 799999999999754
No 84
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.29 E-value=2.6e-10 Score=113.33 Aligned_cols=32 Identities=41% Similarity=0.570 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
|||+|||||++|++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999996
No 85
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.28 E-value=9.1e-11 Score=117.74 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=35.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
++||+|||||++|+++|++|++.|.+|+|+|+++.+|+.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 3699999999999999999999999999999987666443
No 86
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.28 E-value=5.6e-10 Score=115.68 Aligned_cols=46 Identities=33% Similarity=0.382 Sum_probs=39.2
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEc--CC--cEEEcCEEEEecChhhhhc
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPLGVLKA 298 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~i~ad~VI~a~~~~~~~~ 298 (506)
|++|+++++|++|+.++++++|+.. +| .+++||.||-|.+.+...+
T Consensus 128 gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR 177 (538)
T PRK06183 128 HVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVR 177 (538)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHH
Confidence 7899999999999999888887765 56 3799999999999876543
No 87
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.27 E-value=8.3e-10 Score=114.74 Aligned_cols=38 Identities=37% Similarity=0.546 Sum_probs=35.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
+.++||+|||||++||++|+.|++.|++|+|+|+++.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 46789999999999999999999999999999998754
No 88
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.27 E-value=8.7e-11 Score=108.66 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=38.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
..+||+|||||++||+||+.|++.|++|+|+|++..+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 46999999999999999999999999999999999998854
No 89
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.25 E-value=1.1e-09 Score=108.96 Aligned_cols=35 Identities=43% Similarity=0.610 Sum_probs=33.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 58999999999999999999999999999999874
No 90
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.25 E-value=4.9e-10 Score=112.01 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=42.8
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
+.+.+.+ +++++++++|++++.+++++.|++.+|++++||.||.|.+.....
T Consensus 115 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 115 LLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 4454433 478999999999998888899999899899999999999976543
No 91
>PRK06996 hypothetical protein; Provisional
Probab=99.24 E-value=3.8e-09 Score=105.39 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=39.3
Q ss_pred HHHHHhc-cCCeeeCCeeEEEEEcCCcEEEEEcCC---cEEEcCEEEEecCh
Q 010587 246 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 293 (506)
Q Consensus 246 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~i~ad~VI~a~~~ 293 (506)
|.+.+.+ |++++++++|++++.++++|+|+..+| ++++||.||-|.+.
T Consensus 121 L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 121 LARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 4455443 789999999999999888899888754 58999999999883
No 92
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.24 E-value=1.7e-10 Score=116.37 Aligned_cols=41 Identities=27% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCeeeCCeeEEEEEc-CCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 254 LDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 254 ~~i~~~~~V~~I~~~-~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
++|+++++|++|+.+ ++.+.|++.+| +++||.||+|++...
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 578999999999987 44578988888 799999999999755
No 93
>PRK06126 hypothetical protein; Provisional
Probab=99.23 E-value=1.5e-09 Score=112.98 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=33.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
...+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3568999999999999999999999999999998753
No 94
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.23 E-value=1.8e-10 Score=116.95 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHh-ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 244 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 244 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
..+.+.+. .|++|+.+++|++|+. ++.+.|++.+| ++.||+||+|++...
T Consensus 187 ~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 187 RGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccc
Confidence 34444443 4999999999999985 45577888888 799999999998653
No 95
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.21 E-value=1e-10 Score=105.37 Aligned_cols=42 Identities=40% Similarity=0.506 Sum_probs=33.2
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
+++++++++|++|+.++++|.|++.+|++++||+||+|++..
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 667999999999999999999999999889999999999953
No 96
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.20 E-value=7.6e-09 Score=103.94 Aligned_cols=37 Identities=35% Similarity=0.501 Sum_probs=34.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
..+++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4567999999999999999999999999999999964
No 97
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.19 E-value=4.8e-10 Score=112.66 Aligned_cols=44 Identities=43% Similarity=0.573 Sum_probs=40.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
...++|+|||||+|||+||.+|.+.|++|+|||+++.+||....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34689999999999999999999999999999999999997643
No 98
>PLN02463 lycopene beta cyclase
Probab=99.17 E-value=6.3e-09 Score=104.01 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=37.3
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
.|++++ +++|++|+..++++.|++.+|++++||.||.|++...
T Consensus 127 ~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 127 NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 377775 6799999998888899999998999999999998754
No 99
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.16 E-value=9.1e-09 Score=107.32 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=34.4
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
||+|||||+|||+||+.+++.|.+|+|+||....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 8999999999999999999999999999998876664
No 100
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.15 E-value=4.7e-10 Score=118.97 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=41.7
Q ss_pred HHHHHHhccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 245 PVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 245 ~l~~~l~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
.+.+.+.+|++++.+++|++|+.+++++.|.+.+|..+++|.||+|++...
T Consensus 413 aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 413 ALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 333433337899999999999988888889888887778999999999865
No 101
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.14 E-value=1.7e-09 Score=110.90 Aligned_cols=42 Identities=33% Similarity=0.525 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+..+||+|||||++||+||+.+++.|.+|+||||.+.+||..
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 457899999999999999999999999999999999988854
No 102
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.14 E-value=2.7e-08 Score=102.86 Aligned_cols=39 Identities=31% Similarity=0.536 Sum_probs=35.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
..+||+|||||++|+++|+.|++.|++|+|+|+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 469999999999999999999999999999999765444
No 103
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.14 E-value=5.9e-09 Score=107.71 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=37.6
Q ss_pred eeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 256 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 256 i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
++++++|++|+..+++|+|++.+|+++++|.||.|.+.....
T Consensus 209 i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 209 IRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred EEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHH
Confidence 788999999999889999999999899999999999976543
No 104
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.14 E-value=1.6e-08 Score=100.53 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (506)
+||+|||||++|++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976544
No 105
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=1.9e-08 Score=104.41 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH 43 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999998766663
No 106
>PRK07538 hypothetical protein; Provisional
Probab=99.13 E-value=1.1e-08 Score=102.59 Aligned_cols=35 Identities=29% Similarity=0.578 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999997654
No 107
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=4.4e-08 Score=101.45 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=34.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC-CCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~-~GG~ 66 (506)
..+||+|||||.|||+||..+ +.|.+|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 458999999999999999999 89999999999764 4444
No 108
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.12 E-value=8.5e-10 Score=111.01 Aligned_cols=36 Identities=50% Similarity=0.774 Sum_probs=33.2
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
||+|||+|+|||+||+.++++|.+|+|+||.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999898
No 109
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.12 E-value=1.6e-10 Score=113.73 Aligned_cols=35 Identities=43% Similarity=0.563 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
+||+|||||++||++|..|++.|++|+|||+++.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 79999999999999999999999999999997654
No 110
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.12 E-value=7.1e-09 Score=103.58 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=41.6
Q ss_pred HHHHHhc--cCCeeeCCeeEEEEEcCCcEEEEE---cCCcEEEcCEEEEecChhhhhcC
Q 010587 246 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVLKAR 299 (506)
Q Consensus 246 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~V~~---~~G~~i~ad~VI~a~~~~~~~~~ 299 (506)
|.+++.+ +++++++++|++++.++++++|++ .+++++++|.||-|-+.+...+.
T Consensus 113 L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~ 171 (400)
T PRK06475 113 LLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRA 171 (400)
T ss_pred HHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHHh
Confidence 4445433 678999999999998888887765 33457999999999998775543
No 111
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.11 E-value=1.1e-08 Score=101.86 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=33.8
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
||+|||||++|+++|+.|++.|++|+|+|+++..||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999877665
No 112
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.11 E-value=2.8e-08 Score=97.95 Aligned_cols=50 Identities=36% Similarity=0.339 Sum_probs=42.7
Q ss_pred HHHHHhccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 246 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 246 l~~~l~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
+.+.+.++..+++++.|++|+..++.+.|++++|++++|+.||-|.++..
T Consensus 93 l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 93 LLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 45555556679999999999999998889999999999999999999654
No 113
>PLN02661 Putative thiazole synthesis
Probab=99.11 E-value=1.1e-09 Score=103.74 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~ 68 (506)
..+||+|||||++||+||+.|++. |++|+|+|++..+||.+.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 368999999999999999999986 899999999999988543
No 114
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.09 E-value=3.1e-10 Score=103.46 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=44.8
Q ss_pred cchHHHHHHHhc-cCCeeeCCeeEEEEE---cCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 241 RGYLPVINTLAK-GLDIRLGHRVTKITR---HYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 241 ~G~~~l~~~l~~-g~~i~~~~~V~~I~~---~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
.....+.+.+.+ |+.++.+..|+.++. +++.+.|.|.+|..+.|+++|+|+++....
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 334445555543 889999999999874 455688999999889999999999998754
No 115
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.09 E-value=2.4e-09 Score=108.40 Aligned_cols=38 Identities=42% Similarity=0.666 Sum_probs=35.9
Q ss_pred eEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCCCCeeE
Q 010587 30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRV 67 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~GG~~ 67 (506)
||+|||||++||+||+.++++| .+|+|+||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999888864
No 116
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.08 E-value=6e-10 Score=110.05 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=32.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
+||+|||||++|+++|++|++.|.+|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999764
No 117
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.07 E-value=3.4e-08 Score=98.11 Aligned_cols=35 Identities=37% Similarity=0.611 Sum_probs=33.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
.+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 58999999999999999999999999999999874
No 118
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.07 E-value=3e-09 Score=108.45 Aligned_cols=42 Identities=43% Similarity=0.551 Sum_probs=37.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC--CCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR--VGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~--~GG~~ 67 (506)
...+||+|||||++||+||+.+++.|.+|+|+||.+. .||.+
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence 4579999999999999999999999999999999874 67643
No 119
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.07 E-value=5.2e-08 Score=101.94 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=36.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
.+++||+|||||+.|+++|+.|++.|++|+|+|+++..+|.
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence 35699999999999999999999999999999998765553
No 120
>PLN02697 lycopene epsilon cyclase
Probab=99.06 E-value=2.8e-08 Score=100.93 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+..+||+|||||++||++|..|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 34699999999999999999999999999999974
No 121
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.05 E-value=3.5e-09 Score=106.50 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=37.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~ 68 (506)
..+||+||||||+|+++|+.|++. |.+|+|+|+.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 468999999999999999999998 899999999777775443
No 122
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.04 E-value=3.1e-09 Score=101.95 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=36.6
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
|+++++ ++|++|+..++.+.|++.+|+++.||+||+|++..
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 778888 89999999888888988888899999999999974
No 123
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.04 E-value=4e-08 Score=103.04 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDR 62 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~ 62 (506)
+.+++||+|||||++||++|+.|++. |++|+|+|+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 34578999999999999999999994 999999998753
No 124
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.03 E-value=4.1e-08 Score=92.91 Aligned_cols=34 Identities=47% Similarity=0.861 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+.+|+||||||+||++|..|.++|++|+|+|++.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 5789999999999999999999999999999964
No 125
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.03 E-value=5.1e-09 Score=106.17 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=36.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (506)
...+||+||||||.|+++||+|++. |.+|+|+||.+.+|+..
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~s 46 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALES 46 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhc
Confidence 3568999999999999999999985 78999999987777654
No 126
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.02 E-value=2.6e-09 Score=106.91 Aligned_cols=54 Identities=41% Similarity=0.575 Sum_probs=45.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCCCCCeeEEeecCCCcEee
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVD 78 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~~~GG~~~s~~~~g~~~d 78 (506)
..+.+||+|||||+|||++|++|.+.|.+ ++||||++++||.-+....++.+.+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~ 59 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLD 59 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEEC
Confidence 45789999999999999999999999998 9999999999997655444444443
No 127
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.02 E-value=3.4e-09 Score=107.36 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=35.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCeeE
Q 010587 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (506)
+||+||||||+|+++|++|++. |.+|+|||+.+.+|...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~ 41 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAES 41 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhh
Confidence 5999999999999999999997 99999999988777544
No 128
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.01 E-value=4.7e-09 Score=107.52 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=38.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
|.+.+||+|||||++|+++|+.|++.|.+|+|+|+++..+|..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 4567999999999999999999999999999999987666644
No 129
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.00 E-value=2.1e-08 Score=103.49 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
...+||+|||+| +||+||...++.|.+|+|+||.+.+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 458999999999 899999999999999999999999999653
No 130
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.98 E-value=1.1e-08 Score=102.75 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHhc---cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 010587 246 VINTLAK---GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 297 (506)
Q Consensus 246 l~~~l~~---g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~~~ 297 (506)
+.+.|.+ ...++++++|++|+..+++++|++++|+++++|.||.|.+.....
T Consensus 107 l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 161 (414)
T TIGR03219 107 FLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSAL 161 (414)
T ss_pred HHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHH
Confidence 4444433 346899999999999888899999999899999999999987654
No 131
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=9.6e-09 Score=107.68 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=35.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
..+||+|||||+|||+||..+++.|.+|+|+|+...+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 568999999999999999999999999999999777764
No 132
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.98 E-value=1.1e-08 Score=87.48 Aligned_cols=48 Identities=31% Similarity=0.481 Sum_probs=39.0
Q ss_pred HHHHHhccCCee-eCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecCh
Q 010587 246 VINTLAKGLDIR-LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 293 (506)
Q Consensus 246 l~~~l~~g~~i~-~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~ 293 (506)
+.+.+..|++|. .+.+|+.|+..++++.|.+++|..+.||+||+|++.
T Consensus 107 ~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 107 LLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 444454566443 577999999999999999999999999999999974
No 133
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.97 E-value=8.6e-08 Score=94.13 Aligned_cols=36 Identities=33% Similarity=0.678 Sum_probs=33.6
Q ss_pred eEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCe
Q 010587 30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG 65 (506)
||+|||||+|||++|+.|++. |++|+|+|+.+..||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999997 999999999887775
No 134
>PRK09897 hypothetical protein; Provisional
Probab=98.97 E-value=1.5e-08 Score=102.92 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=39.0
Q ss_pred HHHHHHHh-cc--CCeeeCCeeEEEEEcCCcEEEEEcC-CcEEEcCEEEEecCh
Q 010587 244 LPVINTLA-KG--LDIRLGHRVTKITRHYIGVKVTVEG-GKTFVADAVVVAVPL 293 (506)
Q Consensus 244 ~~l~~~l~-~g--~~i~~~~~V~~I~~~~~~v~V~~~~-G~~i~ad~VI~a~~~ 293 (506)
..+.+.+. .| ++++.+++|++|+.+++++.|++.+ |..+.||+||+|++.
T Consensus 111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 111 LRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 33444443 34 5788999999999988889998865 467999999999985
No 135
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.96 E-value=3.4e-08 Score=102.91 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=40.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
....+||+|||+|++|++||+.++++|.+|+|||+++.+||.+.
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 45689999999999999999999999999999999998898764
No 136
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.95 E-value=1.5e-08 Score=101.58 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=35.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||+|.|||+||..++ .|.+|+|+||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999975 79999999998887764
No 137
>PRK07121 hypothetical protein; Validated
Probab=98.95 E-value=2.3e-08 Score=102.51 Aligned_cols=42 Identities=33% Similarity=0.491 Sum_probs=38.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
...+||+|||||++||+||+.++++|.+|+|+||.+..||..
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 357999999999999999999999999999999998888854
No 138
>PLN02985 squalene monooxygenase
Probab=98.95 E-value=2.3e-07 Score=94.90 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=39.2
Q ss_pred hcccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 17 YSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 17 ~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
.+...+......+||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 32 ~~~~~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 32 ADAVAEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred hhhhcccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3445555566789999999999999999999999999999999643
No 139
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.95 E-value=1.1e-07 Score=94.82 Aligned_cols=41 Identities=37% Similarity=0.534 Sum_probs=38.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+.+||+||||||+|+-+|..++..|++|+|+|++|...|..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 68999999999999999999999999999999999877765
No 140
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.94 E-value=1.3e-08 Score=104.34 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=37.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
+..++||+|||||++|+++|+.|++.|.+|+|+|+++..+|.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 456799999999999999999999999999999998755554
No 141
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=1.2e-08 Score=100.78 Aligned_cols=44 Identities=45% Similarity=0.591 Sum_probs=40.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (506)
...+|+|||||+|||++|.+|.+.|++|+||||.+.+||.-...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 47899999999999999999999999999999999999986543
No 142
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.92 E-value=8.5e-09 Score=102.47 Aligned_cols=36 Identities=36% Similarity=0.657 Sum_probs=34.0
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 32 IVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 32 ~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+|||||++||+||+.|++.|.+|+|+|+++.+|+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~ 36 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL 36 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence 699999999999999999999999999999998765
No 143
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.92 E-value=3.8e-08 Score=100.39 Aligned_cols=42 Identities=29% Similarity=0.492 Sum_probs=38.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
...|||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~c~ 43 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK-GKLGGTCL 43 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEc-cCCCcceE
Confidence 4679999999999999999999999999999998 48899874
No 144
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.91 E-value=7.4e-08 Score=98.98 Aligned_cols=40 Identities=35% Similarity=0.596 Sum_probs=37.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
..+||+||||| +||+||+++++.|.+|+||||.+..||.+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 47999999999 99999999999999999999998888854
No 145
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.91 E-value=4.9e-08 Score=99.51 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=38.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
.++||+|||||++|++||++|++.|.+|+|+|+++.+||.|
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~ 44 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGC 44 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence 46999999999999999999999999999999988999976
No 146
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.90 E-value=3.1e-08 Score=102.28 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=37.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
...+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 45799999999999999999999999999999998877763
No 147
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.90 E-value=4.4e-08 Score=96.22 Aligned_cols=229 Identities=17% Similarity=0.178 Sum_probs=113.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecC---------------------CCcEeecCCce
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS---------------------FGFPVDLGASW 83 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~---------------------~g~~~d~G~~~ 83 (506)
|++.|||+|+|.|+.-...|..|++.|.+|+.+|+|+..||...|... ..+.+|+.+..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 457899999999999999999999999999999999999999888541 12456666665
Q ss_pred eeCCCCCCchHHHHHhcCCCeeecCCCCcccccchhhhHHHHHHHHhhhccccceeecCCCCccCHHHHHH---------
Q 010587 84 LHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTK--------- 154 (506)
Q Consensus 84 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 154 (506)
+. ....+.+++-+-++.- ++++......|.+........|....+.
T Consensus 81 l~---a~g~LV~lLi~S~V~r----------------------YLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~ 135 (438)
T PF00996_consen 81 LY---ARGPLVKLLISSGVTR----------------------YLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLF 135 (438)
T ss_dssp EE---TTSHHHHHHHHCTGGG----------------------GSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HH
T ss_pred hh---ccCHHHHHHHhCCccc----------------------ceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHH
Confidence 54 3345566665555431 1111111111111111111111111110
Q ss_pred HHHHHHHHHHHHHHHhhc--------CCCCCCHHHHHHHHHccCchhhhhhhHHHHHHHHHHhhhhcccCCc--cc---c
Q 010587 155 VGEAFESILKETDKVREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADA--ET---I 221 (506)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~ 221 (506)
-.+.+.+++..+...... .....++.+++. ..++.+.+.+.+.-.+. ....+. .. -
T Consensus 136 eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~~~~e~~~----------~f~L~~~~~~~i~haia-L~~~~~~~~~p~~~ 204 (438)
T PF00996_consen 136 EKRRLMKFLKFVANYEEDDPSTHKGLDPEKKTFQELLK----------KFGLSENLIDFIGHAIA-LSLDDSYLTEPARE 204 (438)
T ss_dssp HHHHHHHHHHHHHHGCTTBGGGSTTG-TTTSBHHHHHH----------HTTS-HHHHHHHHHHTS--SSSSGGGGSBSHH
T ss_pred HHHHHHHHHHHHhhcccCCcchhhccccccccHHHHHH----------hcCCCHHHHHHHHHhhh-hccCcccccccHHH
Confidence 112234444444433221 123456677654 24555555544321111 111111 00 0
Q ss_pred cccc---cc--cccccCCCccccccchHHHHHHHhc-----cCCeeeCCeeEEEEEcC-CcEE-EEEcCCcEEEcCEEEE
Q 010587 222 SLKS---WD--KEELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHY-IGVK-VTVEGGKTFVADAVVV 289 (506)
Q Consensus 222 s~~~---~~--~~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~-~~v~-V~~~~G~~i~ad~VI~ 289 (506)
.+.. +. ...+-...+-++.-|.++|++++.+ |+...+|++|.+|..+. +++. |. .+|++++|+.||.
T Consensus 205 ~l~ri~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~ 283 (438)
T PF00996_consen 205 GLERIKLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIG 283 (438)
T ss_dssp HHHHHHHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEE
T ss_pred HHHHHHHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEE
Confidence 0000 00 0011122444677788899988854 88999999999998854 4444 54 4888999999995
Q ss_pred e
Q 010587 290 A 290 (506)
Q Consensus 290 a 290 (506)
.
T Consensus 284 d 284 (438)
T PF00996_consen 284 D 284 (438)
T ss_dssp E
T ss_pred C
Confidence 4
No 148
>PTZ00367 squalene epoxidase; Provisional
Probab=98.89 E-value=3.5e-07 Score=94.09 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=33.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 457899999999999999999999999999999864
No 149
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.89 E-value=7e-08 Score=100.61 Aligned_cols=43 Identities=33% Similarity=0.503 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..++||+|||||++||+||+.++++|.+|+|+||.+..||.+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 3579999999999999999999999999999999999998764
No 150
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.89 E-value=1.1e-08 Score=104.26 Aligned_cols=40 Identities=40% Similarity=0.615 Sum_probs=34.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
++|+|||||+|||+||..|.+.|++|++||+++.+||.-+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 6899999999999999999999999999999999999753
No 151
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.88 E-value=6e-08 Score=98.17 Aligned_cols=40 Identities=43% Similarity=0.571 Sum_probs=37.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
+|||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 59999999999999999999999999999998 68999774
No 152
>PRK12839 hypothetical protein; Provisional
Probab=98.88 E-value=7.6e-08 Score=99.73 Aligned_cols=44 Identities=30% Similarity=0.470 Sum_probs=40.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
++..+||+|||+|.+||+||+.|+++|.+|+|+|+...+||.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 45689999999999999999999999999999999999999764
No 153
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.88 E-value=2.7e-07 Score=90.12 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=50.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCCCCeeEEeecC--CCcEeecCCceeeCCCCCCchHHHHHhc
Q 010587 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYS--FGFPVDLGASWLHGVCQENPLAPVISRL 100 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (506)
+.++-|||+|+|+|+||.+|-+. |.+|+|||+.+.+||.+.+... .|+.+--|-+ +. .....+.+|+...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~-~~--~~~eclwdLls~I 77 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRM-ME--FHYECLWDLLSSI 77 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcc-cc--chhHHHHHHHHhC
Confidence 46889999999999999999996 5789999999999999866432 4665533322 21 1223455555554
No 154
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=5.2e-08 Score=102.15 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=35.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
..+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 468999999999999999999999999999999876555
No 155
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.87 E-value=1.4e-07 Score=97.83 Aligned_cols=41 Identities=34% Similarity=0.637 Sum_probs=38.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
.++||+|||+|++||+||+.+++.|.+|+|||+.+..||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 57999999999999999999999999999999988888864
No 156
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.87 E-value=1.1e-07 Score=98.50 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=38.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+.+||+|||+|++|++||+.+++.|.+|+|||+.+.+||.+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 47999999999999999999999999999999998888864
No 157
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.87 E-value=4.2e-08 Score=100.30 Aligned_cols=38 Identities=42% Similarity=0.565 Sum_probs=34.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
.+||+|||||+|||+||+.+++.|. |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 4799999999999999999999997 9999998777764
No 158
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.86 E-value=1.2e-07 Score=98.68 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=38.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
...++||+|||+|++||+||+.++++|.+|+||||.+..||.
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 456799999999999999999999999999999999988884
No 159
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.86 E-value=2.7e-08 Score=101.18 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC-CCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-~~~GG~ 66 (506)
.++||+|||||+||+.||+.+++.|.+|+|+|++ +.+|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 4699999999999999999999999999999997 477754
No 160
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.86 E-value=3.1e-08 Score=101.99 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=37.9
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
|++++++++|++|...++.+.|.+.+|.++.||.||+|++..
T Consensus 280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 788999999999999877888888888899999999999974
No 161
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.86 E-value=8.9e-08 Score=97.44 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=39.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
..+|||+|||||++|++||..|++.|.+|+|+|+.+.+||.|
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 356999999999999999999999999999999988899976
No 162
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.86 E-value=3.2e-08 Score=101.81 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=37.8
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
|++++++++|++|+..++.+.|++.+|+++.||+||+|++..
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 788999999999998777788888888889999999999975
No 163
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=5.4e-08 Score=101.39 Aligned_cols=39 Identities=21% Similarity=0.465 Sum_probs=34.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGR 66 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~ 66 (506)
.+||+|||||+|||+||+.++++| .+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 479999999999999999999874 899999998766653
No 164
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.84 E-value=1.3e-07 Score=98.12 Aligned_cols=42 Identities=45% Similarity=0.755 Sum_probs=38.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC--CCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--RVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~--~~GG~~ 67 (506)
...+||+|||+|.+||+||..++++|.+|+||||.+ .+||.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 457999999999999999999999999999999998 788865
No 165
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.83 E-value=6.8e-08 Score=101.05 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=36.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||||+|||+||+.++++|.+|+|+||....||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 3589999999999999999999999999999998776663
No 166
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=1.1e-07 Score=96.91 Aligned_cols=41 Identities=37% Similarity=0.482 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..|||+|||||++|++||..|++.|++|+|+|+.. +||.|.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 56999999999999999999999999999999966 999763
No 167
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.82 E-value=5.6e-08 Score=99.62 Aligned_cols=38 Identities=26% Similarity=0.620 Sum_probs=34.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
.+||+|||+|.|||+||..+++ |.+|+|+||.+..||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 5899999999999999999976 8999999998877764
No 168
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.81 E-value=1.1e-07 Score=96.27 Aligned_cols=41 Identities=32% Similarity=0.579 Sum_probs=37.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
++|||+|||||++|++||..|++.|++|+|+|+ +.+||.|-
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence 369999999999999999999999999999998 57899763
No 169
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.81 E-value=8.9e-08 Score=97.25 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
++||+|||||+|||+||..+++.|.+|+|+||..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4899999999999999999999999999999965
No 170
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.79 E-value=1.5e-07 Score=93.43 Aligned_cols=43 Identities=40% Similarity=0.560 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
.++||++|||||++|.+||.++++.|.+|.|+|+...+||.|-
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL 44 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence 3579999999999999999999999999999999879999873
No 171
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.79 E-value=6.1e-08 Score=100.03 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=35.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
+..+||+|||||+|||+||+.++ .|.+|+|+||.+..||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 35799999999999999999996 59999999998877774
No 172
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6e-08 Score=91.50 Aligned_cols=41 Identities=39% Similarity=0.542 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+.+||+|||||++||+||.++++.|.++.|++....+||..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~ 42 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL 42 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcc
Confidence 46999999999999999999999999944444447777654
No 173
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.79 E-value=8.6e-08 Score=97.67 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=37.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+++||+|||||++|++||.+|++.|.+|+|+|+ +.+||.|
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c 42 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVC 42 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCce
Confidence 359999999999999999999999999999998 5788877
No 174
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.78 E-value=8.4e-08 Score=99.51 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=38.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
.+.|||+|||||+|||+||..|++.|++|+|+|+ +.+||.+.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~ 43 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQIT 43 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEE
Confidence 4579999999999999999999999999999998 57888764
No 175
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=2.1e-07 Score=97.08 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC---CcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G---~~V~vlE~~~~~GG~ 66 (506)
..+||+|||||+|||+||..+++.| .+|+|+||....||.
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 4689999999999999999999998 899999998877764
No 176
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.77 E-value=2.2e-07 Score=97.12 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=34.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G 64 (506)
..+||+|||||+|||+||..+++. |.+|+|+||.+..+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 358999999999999999999998 99999999987543
No 177
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.76 E-value=1.3e-07 Score=98.52 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=35.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||||+|||+||+.+++. |.+|+|+||....||.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~ 44 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH 44 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 468999999999999999999987 4799999998777763
No 178
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=8.2e-08 Score=99.94 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999998776664
No 179
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.76 E-value=1.5e-07 Score=98.43 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=36.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||||+|||+||+.+++.|.+|+|+||....||.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 4689999999999999999999999999999998776664
No 180
>PLN02815 L-aspartate oxidase
Probab=98.76 E-value=1.1e-07 Score=98.51 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=36.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
...+||+|||||+|||+||+.+++.| +|+|+||....||.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 34689999999999999999999999 99999998887774
No 181
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.75 E-value=1.7e-07 Score=97.84 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=32.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
|+|||||+|||+||..+++.|.+|+|+||.+.+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 69999999999999999999999999999886654
No 182
>PLN02507 glutathione reductase
Probab=98.75 E-value=1e-07 Score=97.48 Aligned_cols=47 Identities=30% Similarity=0.513 Sum_probs=39.4
Q ss_pred HHHh-ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 248 NTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 248 ~~l~-~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
+.|. .|+++++++.|++|+.+++++.|.+.+|+++.+|.||++++..
T Consensus 252 ~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 252 RNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 3444 3899999999999998777788888888889999999999853
No 183
>PRK08275 putative oxidoreductase; Provisional
Probab=98.75 E-value=1.2e-07 Score=98.37 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=34.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG 65 (506)
..+||+|||||.|||+||..+++. |.+|+|+||....+|
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~ 48 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS 48 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 458999999999999999999987 689999999876433
No 184
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.74 E-value=1.6e-07 Score=94.80 Aligned_cols=34 Identities=47% Similarity=0.687 Sum_probs=30.7
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEeeCCC--CCee
Q 010587 33 VIGAGMAGVAAARALHDASFKVVLLESRDR--VGGR 66 (506)
Q Consensus 33 IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~--~GG~ 66 (506)
|||+|++||+||+.+++.|.+|+|+||.+. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 899999999999999999999999999874 4553
No 185
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.74 E-value=1.5e-08 Score=101.76 Aligned_cols=38 Identities=47% Similarity=0.621 Sum_probs=32.7
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
||+|||||++|++||+.+++.|.+|+|+|+.+.+||..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~ 38 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA 38 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc
Confidence 89999999999999999999999999999999999965
No 186
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.73 E-value=2.5e-07 Score=96.06 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=35.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (506)
.+||+|||||+|||+||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 58999999999999999999987 57999999988777743
No 187
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.73 E-value=1.4e-07 Score=96.75 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
...||+|||||+|||+||..++ |.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4689999999999999999997 569999999876
No 188
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.71 E-value=3.6e-07 Score=95.27 Aligned_cols=43 Identities=44% Similarity=0.548 Sum_probs=39.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
+.++||+|||+|.+|++||+.++++|.+|+|+|+++.+||.+.
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 4468999999999999999999999999999999999999654
No 189
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=2.9e-07 Score=96.15 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||||+|||+||+.+++.|.+|+|+||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999997766653
No 190
>PRK10262 thioredoxin reductase; Provisional
Probab=98.71 E-value=2.2e-07 Score=89.96 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=38.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..+.+||+|||||++||+||..|++.|++|+|+|+ ...||.+.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~ 45 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 45 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence 45789999999999999999999999999999996 46788653
No 191
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.70 E-value=4.5e-08 Score=94.35 Aligned_cols=40 Identities=35% Similarity=0.332 Sum_probs=33.5
Q ss_pred cCCeeeCCeeEEEEEcCCcEE-EEEcCCcEEEcCEEEEecCh
Q 010587 253 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPL 293 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~i~ad~VI~a~~~ 293 (506)
+++|. ..+|++|..+++++. |.+.+|+.+.+|.||+|++.
T Consensus 110 nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 110 NLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 56774 678999999988875 99999999999999999998
No 192
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.69 E-value=5.2e-07 Score=86.38 Aligned_cols=50 Identities=28% Similarity=0.283 Sum_probs=41.3
Q ss_pred HHHHHHhc-cCCeeeCCeeEEEEEcCCcE-EEEEcCCcEEEcCEEEEecChh
Q 010587 245 PVINTLAK-GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 245 ~l~~~l~~-g~~i~~~~~V~~I~~~~~~v-~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.+.+.|.+ |++|+++++|..|+.+++.+ .|.+++|+++.+|+||+|.+-.
T Consensus 178 ni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 178 NIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 34444443 89999999999999998865 4888999999999999999853
No 193
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=4.8e-07 Score=94.41 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||||.|||+||..+++.|.+|+|+||....||.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 4689999999999999999999999999999998766664
No 194
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.66 E-value=2.6e-07 Score=97.25 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
..+||+|||||+|||+||..+++.|.+|+|+|+....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 368999999999999999999999999999999876655
No 195
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=7.7e-07 Score=92.83 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=35.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
+.||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 579999999999999999999999999999998876663
No 196
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.66 E-value=8.7e-07 Score=90.46 Aligned_cols=42 Identities=33% Similarity=0.514 Sum_probs=36.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEee------CCCCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES------RDRVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~------~~~~GG~~ 67 (506)
.+.||++|||||++|++||.++++.|.+|+|+|+ ...+||.|
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c 49 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC 49 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence 3469999999999999999999999999999998 24566655
No 197
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.65 E-value=3e-07 Score=102.98 Aligned_cols=42 Identities=36% Similarity=0.605 Sum_probs=38.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
...+||+|||||.|||+||..+++.|.+|+|+||.+..||.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 357999999999999999999999999999999999999864
No 198
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.65 E-value=1.5e-06 Score=84.36 Aligned_cols=33 Identities=36% Similarity=0.620 Sum_probs=30.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
||+|||+|++||++|..|++. ++|+|+=|.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999998 999999996543
No 199
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=1e-06 Score=91.97 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
..+||+|||||++||+||+.+++. .+|+|+||....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 468999999999999999999986 89999999765554
No 200
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.59 E-value=6.8e-07 Score=81.34 Aligned_cols=39 Identities=36% Similarity=0.643 Sum_probs=36.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
-.|+|||+|++||+|+..+...|-.|+++|++..+||..
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 369999999999999999999988899999999999975
No 201
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.58 E-value=1.2e-06 Score=90.51 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=35.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+||+|||+|+|||+||+.+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 468999999999999999999987 899999998877774
No 202
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.56 E-value=1.1e-06 Score=89.42 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=35.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
+||+|||+|++|+++|++|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988886
No 203
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.54 E-value=5.3e-07 Score=89.71 Aligned_cols=62 Identities=21% Similarity=0.097 Sum_probs=45.5
Q ss_pred CCCccccccch---HHHHHHHhc-----cCCeeeCCeeEEEEEcCCc-EEEEEcCCcEEEcCEEEEecChhh
Q 010587 233 PGGHGLMVRGY---LPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 233 ~~~~~~~~~G~---~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
.++.+.+.+|. ..++.+|+. |+.|..||+|++|....++ +.|.|..| .|++.+||.|++...
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 34444444441 234455532 8899999999999887665 46999999 799999999999764
No 204
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.51 E-value=1.1e-06 Score=65.56 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=32.1
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (506)
+|+|||||+.|+-+|..|++.|.+|+|+|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999977644
No 205
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.50 E-value=1.7e-05 Score=76.81 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=70.6
Q ss_pred hhhhhhHHHHHHHHHHhh-hhcccCCcccccccccccccccCCCccccccchHHHHHHHhc--cCCeeeCCeeEEE-EEc
Q 010587 193 LRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKI-TRH 268 (506)
Q Consensus 193 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~--g~~i~~~~~V~~I-~~~ 268 (506)
|+..++++.+++.++.+. +..|+++.+--.+..........++.+.+.||..++.+.|.+ +.++ +|++|++| ...
T Consensus 76 L~~~gi~~~fi~Elv~a~tRvNYgQ~~~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~ 154 (368)
T PF07156_consen 76 LKENGISERFINELVQAATRVNYGQNVNIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRS 154 (368)
T ss_pred HHHCCCCHHHHHHHHHhheEeecccccchhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEecc
Confidence 455678888888877774 777887642222222222222356778899999999999975 8899 99999999 444
Q ss_pred CCc---EEEEEcCC---cEEEcCEEEEecChhhh
Q 010587 269 YIG---VKVTVEGG---KTFVADAVVVAVPLGVL 296 (506)
Q Consensus 269 ~~~---v~V~~~~G---~~i~ad~VI~a~~~~~~ 296 (506)
+++ +.|++.++ ..-.+|.||+|+|+...
T Consensus 155 ~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 155 SDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred CCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 443 45665542 23468999999999643
No 206
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.49 E-value=1.6e-07 Score=102.20 Aligned_cols=42 Identities=29% Similarity=0.524 Sum_probs=40.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..++|+|||||+|||+||+.|++.|++|+|||+.+++||.++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 578999999999999999999999999999999999999875
No 207
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.47 E-value=2.4e-06 Score=79.77 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=39.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..+|++|||+|++|-.||.+.++.|++..++|++..+||.|-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 579999999999999999999999999999999999999773
No 208
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.46 E-value=6.2e-06 Score=83.95 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=35.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
++||+|||||++|++||..+++.|.+|+|+|+. .+||.|
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c 39 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAA 39 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcc
Confidence 468999999999999999999999999999985 589876
No 209
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.46 E-value=2.3e-07 Score=100.16 Aligned_cols=43 Identities=37% Similarity=0.556 Sum_probs=40.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
..++|+|||||+|||+||++|++.|++|+|+|+++.+||.++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4689999999999999999999999999999999999999854
No 210
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.45 E-value=8.8e-06 Score=78.89 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (506)
+++||++|||||.|.+.++.|++. ..+|.|+|+.+.++.-.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ES 44 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALES 44 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhc
Confidence 579999999999999999999996 57999999988877543
No 211
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.45 E-value=3.3e-07 Score=92.15 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=40.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEeeCCCCCeeEEe
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~--~G~~V~vlE~~~~~GG~~~s 69 (506)
....++|+|||||+|||+||+.|++ .|++|+|||+.+.+||.++.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3456899999999999999999997 69999999999999998864
No 212
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=2.1e-07 Score=94.68 Aligned_cols=40 Identities=35% Similarity=0.520 Sum_probs=38.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+|||+|||||++|++||.++++.|++|+|+|+++.+||.|
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 4999999999999999999999999999999888899987
No 213
>PRK12831 putative oxidoreductase; Provisional
Probab=98.42 E-value=3.7e-07 Score=92.51 Aligned_cols=44 Identities=30% Similarity=0.520 Sum_probs=40.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..+.+||+|||||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 34679999999999999999999999999999999999999874
No 214
>PRK06116 glutathione reductase; Validated
Probab=98.42 E-value=2.1e-07 Score=94.53 Aligned_cols=41 Identities=37% Similarity=0.583 Sum_probs=37.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+.+|||+|||||++|++||..|++.|++|+|+|+ +.+||.|
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~-~~~GG~c 42 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEA-KRLGGTC 42 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec-cchhhhh
Confidence 3469999999999999999999999999999998 4899976
No 215
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.42 E-value=1.9e-07 Score=89.56 Aligned_cols=43 Identities=49% Similarity=0.752 Sum_probs=40.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
...+++|||||++|++||..|++.|++|.++|+++.+||++..
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 4589999999999999999999999999999999999999754
No 216
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.41 E-value=5.2e-06 Score=91.03 Aligned_cols=36 Identities=36% Similarity=0.440 Sum_probs=33.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
..+||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999764
No 217
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.41 E-value=4.8e-06 Score=76.33 Aligned_cols=41 Identities=41% Similarity=0.731 Sum_probs=36.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC--CCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--RVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~--~~GG~~ 67 (506)
...||+|||||++||.||.+|+.+|.+|+|+|+.. .+||.+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 46899999999999999999999999999999864 477765
No 218
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.38 E-value=3.3e-07 Score=93.47 Aligned_cols=40 Identities=35% Similarity=0.515 Sum_probs=37.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
.|||+|||||++|++||++|++.|.+|+|+|+ +.+||.|.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 48999999999999999999999999999999 89999875
No 219
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.38 E-value=4e-07 Score=92.14 Aligned_cols=41 Identities=39% Similarity=0.477 Sum_probs=37.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC-CCeeEE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGRVH 68 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~-~GG~~~ 68 (506)
+|||+|||||++|++||..|++.|++|+|+|+++. +||.|-
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 59999999999999999999999999999999864 699763
No 220
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.35 E-value=4.9e-07 Score=91.58 Aligned_cols=41 Identities=32% Similarity=0.502 Sum_probs=37.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC-CCCeeEE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGGRVH 68 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~-~~GG~~~ 68 (506)
.|||+|||||++|++||.+|++.|++|+|+|+.+ .+||.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 5999999999999999999999999999999976 4899874
No 221
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.34 E-value=5.7e-07 Score=96.68 Aligned_cols=44 Identities=41% Similarity=0.542 Sum_probs=40.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
...++|+|||||+|||+||+.|++.|++|+|+|+.+.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45789999999999999999999999999999999999998754
No 222
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.32 E-value=0.00014 Score=67.16 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=32.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDR 62 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~ 62 (506)
+..+||+|||||.+|++.|+-|.+. |++|+|+|+++.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 4579999999999999999999874 799999999774
No 223
>PRK06370 mercuric reductase; Validated
Probab=98.32 E-value=6.1e-07 Score=91.40 Aligned_cols=42 Identities=38% Similarity=0.478 Sum_probs=37.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..++||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 45699999999999999999999999999999984 6788763
No 224
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.31 E-value=1.3e-05 Score=83.44 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=30.7
Q ss_pred eEEEECCCHHHHHHHHHHH----HCCCcEEEEeeCCC
Q 010587 30 SVIVIGAGMAGVAAARALH----DASFKVVLLESRDR 62 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~----~~G~~V~vlE~~~~ 62 (506)
||+|||||+|||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 67999999999765
No 225
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.31 E-value=1.2e-06 Score=86.71 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHH-HCCCcEEEEeeCCCCCeeEEe
Q 010587 26 ARSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~~~GG~~~s 69 (506)
...+.|+|||||+|||+||.+|+ +.|++|+|||+.+.+||.++.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 35679999999999999999765 579999999999999999976
No 226
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.31 E-value=1e-05 Score=78.63 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR 62 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~ 62 (506)
++++|+|||||.+||.+|..|.++- .+|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4689999999999999999999974 88999999874
No 227
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.31 E-value=1e-05 Score=83.01 Aligned_cols=42 Identities=36% Similarity=0.447 Sum_probs=38.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
..++||+|||||.|||.||..++++|.+|.|+||....+|.+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 457999999999999999999999999999999988777553
No 228
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.31 E-value=4.9e-05 Score=75.50 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHHHHhccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 244 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 244 ~~l~~~l~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
..+.+++.+|++|+.+++|++|+.+++++.|++.+|.+++||+||+|++...
T Consensus 139 ~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 139 RALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 3444444448899999999999998888899999997799999999999765
No 229
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=7.2e-07 Score=90.93 Aligned_cols=41 Identities=44% Similarity=0.541 Sum_probs=37.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
++|||+|||||++|++||.+|++.|.+|+|+|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 359999999999999999999999999999999 78999764
No 230
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.28 E-value=1.3e-05 Score=81.79 Aligned_cols=39 Identities=38% Similarity=0.382 Sum_probs=34.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+||+|||||++|+.||+.+++.|.+|+|+|++...+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 699999999999999999999999999999975444443
No 231
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.28 E-value=2.3e-07 Score=79.19 Aligned_cols=67 Identities=28% Similarity=0.556 Sum_probs=53.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCeeEEeecCCCcEeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010587 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lgl~~ 104 (506)
.-||+|||+|.+||+|||.+++. ..+|.|+|++--+||.++ +|++.|..+--..+..-+++++|+..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~EigvpY 144 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVPY 144 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCCc
Confidence 46999999999999999999976 579999999988998754 56666654434456667788988863
No 232
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.28 E-value=9.1e-07 Score=83.26 Aligned_cols=44 Identities=32% Similarity=0.580 Sum_probs=38.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHC------CCcEEEEeeCCCCCeeEEe
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~------G~~V~vlE~~~~~GG~~~s 69 (506)
...+||+|||||++||+||.+|.+. .++|+|+|+...+||.+-|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 4569999999999999999999763 3689999999999998654
No 233
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.27 E-value=1.2e-06 Score=96.46 Aligned_cols=42 Identities=33% Similarity=0.459 Sum_probs=39.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
+.++|+|||||++||+||+.|++.|++|+|||+.+.+||.++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 468999999999999999999999999999999999999875
No 234
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.26 E-value=1.2e-06 Score=92.86 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=40.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
+.++|+|||||++||+||+.|++.|++|+|||+.+.+||.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 5689999999999999999999999999999999999998753
No 235
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.26 E-value=1.4e-06 Score=86.80 Aligned_cols=56 Identities=34% Similarity=0.386 Sum_probs=45.7
Q ss_pred hhhhhhcccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 12 RRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
+.++.+..... .....+|+|||||++||+||+.|++.|++|+|+|+.+.+||++..
T Consensus 109 ~~g~i~~~~~~--~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 109 REGWIPGELPG--SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred HhCCCCCCCCC--CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 34444444222 234599999999999999999999999999999999999999864
No 236
>PRK14694 putative mercuric reductase; Provisional
Probab=98.25 E-value=1.1e-06 Score=89.46 Aligned_cols=42 Identities=29% Similarity=0.443 Sum_probs=38.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..++||+|||||++|++||..|++.|.+|+|+|+ +.+||.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~-~~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIER-GTIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEc-ccccccee
Confidence 3579999999999999999999999999999998 47999874
No 237
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.24 E-value=1.5e-06 Score=87.79 Aligned_cols=43 Identities=40% Similarity=0.552 Sum_probs=39.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
.+.++|+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 3568999999999999999999999999999999999999764
No 238
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.23 E-value=8.8e-06 Score=82.63 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=34.9
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEc-CCcEEE--cCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVE-GGKTFV--ADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~-~G~~i~--ad~VI~a~~~~ 294 (506)
.|+++++++.|++|+.+++.+.+... +|++++ ||++|+|++..
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 38899999999999988887777652 355666 99999999975
No 239
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.23 E-value=1.2e-06 Score=89.35 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=35.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
|||+|||||++|++||.+|++.|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999855 888763
No 240
>PTZ00058 glutathione reductase; Provisional
Probab=98.22 E-value=1.5e-06 Score=89.60 Aligned_cols=40 Identities=43% Similarity=0.578 Sum_probs=37.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
.+|||+|||||++|++||..+++.|.+|+|+|+ +.+||.|
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk-~~~GGtC 86 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEK-DYLGGTC 86 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEec-ccccccc
Confidence 578999999999999999999999999999998 4799987
No 241
>PRK14727 putative mercuric reductase; Provisional
Probab=98.21 E-value=1.9e-06 Score=88.10 Aligned_cols=43 Identities=30% Similarity=0.412 Sum_probs=40.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..++|++|||||++|++||..|++.|.+|+|+|+.+.+||.|.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 3579999999999999999999999999999999889999874
No 242
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.21 E-value=1.7e-06 Score=90.46 Aligned_cols=45 Identities=40% Similarity=0.553 Sum_probs=41.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
....++|+|||+|++||+||-.|.+.|+.|+|+|+++|+||.+..
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 456799999999999999999999999999999999999998753
No 243
>PRK13748 putative mercuric reductase; Provisional
Probab=98.21 E-value=1.4e-06 Score=91.13 Aligned_cols=41 Identities=37% Similarity=0.481 Sum_probs=38.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..|||+|||||++|++||..|++.|.+|+|+|++ .+||.|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 4699999999999999999999999999999986 8999873
No 244
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.21 E-value=1.6e-06 Score=88.82 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHh-ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 246 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 246 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
+.+.|. .|+++++++.|++|+..++.+.|.+.+|+++.+|.||+|++..
T Consensus 228 l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 228 VVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 444554 4899999999999987666677777888889999999999854
No 245
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.20 E-value=2.5e-05 Score=79.20 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+||++|||||++|..||..+ .|.+|+|+|+ +.+||.|
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~-~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEK-GTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeC-CCCCCee
Confidence 59999999999999987554 6999999998 6789977
No 246
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.20 E-value=2e-06 Score=92.73 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=40.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
...++|+|||||+|||+||+.|++.|++|+|||+.+.+||.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3578999999999999999999999999999999999999875
No 247
>PRK07846 mycothione reductase; Reviewed
Probab=98.18 E-value=3.6e-05 Score=77.98 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+||++|||||++|.+||..+ .|.+|+|+|+ +.+||.|
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~-~~~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEK-GTFGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeC-CCCCCcc
Confidence 48999999999999999764 5999999998 6789876
No 248
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.18 E-value=2.9e-06 Score=86.42 Aligned_cols=43 Identities=42% Similarity=0.638 Sum_probs=39.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
...++|+|||||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3568999999999999999999999999999999999999864
No 249
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.14 E-value=3.2e-06 Score=89.39 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=39.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..++|+|||||++||+||+.|++.|++|+|+|+++.+||.++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 468999999999999999999999999999999999999874
No 250
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.13 E-value=3.3e-06 Score=89.24 Aligned_cols=43 Identities=37% Similarity=0.552 Sum_probs=40.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
+.++|+|||||++||+||+.|++.|++|+|||+.+.+||.++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 5799999999999999999999999999999999999998753
No 251
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.13 E-value=1.3e-05 Score=80.91 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=32.1
Q ss_pred hccCCeeeCCeeEEEEEcCCc-E-EEEEcCCcEEEcCEEEEecChhhh
Q 010587 251 AKGLDIRLGHRVTKITRHYIG-V-KVTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 251 ~~g~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
..|++++.++ |..+..++++ + .|++.+|++++||.||=|++...+
T Consensus 166 ~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 166 ERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred cCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 3599998885 7777766554 4 599999999999999999997653
No 252
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.13 E-value=3.5e-06 Score=85.55 Aligned_cols=43 Identities=37% Similarity=0.556 Sum_probs=40.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
+.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 5689999999999999999999999999999999999998753
No 253
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.13 E-value=3.3e-06 Score=85.80 Aligned_cols=43 Identities=40% Similarity=0.665 Sum_probs=39.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
...++|+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4568999999999999999999999999999999999999764
No 254
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.12 E-value=1.3e-05 Score=72.99 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=37.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCeeE
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (506)
...++|++||||||.||+.|..|.-. +.+|.|+|+...++=..
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq 89 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ 89 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee
Confidence 45689999999999999999998766 89999999987776444
No 255
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=3.4e-05 Score=71.31 Aligned_cols=43 Identities=35% Similarity=0.426 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
.+.+|..|||||.+|+++|.+.++.|.+|.|+|..-++||.|-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 4579999999999999999999999999999999779999874
No 256
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.12 E-value=3.1e-06 Score=86.09 Aligned_cols=41 Identities=24% Similarity=0.476 Sum_probs=37.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEeeC--------CCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESR--------DRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~--------~~~GG~~ 67 (506)
++|||+|||||++|.+||..+++. |.+|+|+|+. +.+||.|
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtC 51 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTC 51 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCee
Confidence 469999999999999999999997 9999999984 5799977
No 257
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.11 E-value=3.4e-06 Score=82.30 Aligned_cols=37 Identities=41% Similarity=0.413 Sum_probs=33.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (506)
+.||+|||||++|+.||+.|++.|++|+|+|+.+...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 5799999999999999999999999999999876544
No 258
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.11 E-value=3.4e-06 Score=89.78 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=35.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
...++|+|||||+|||+||++|++.|++|+|+|+.+..|+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 4678999999999999999999999999999999765444
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.10 E-value=1.8e-05 Score=79.97 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=34.9
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcC-Cc--EEEcCEEEEecChhh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEG-GK--TFVADAVVVAVPLGV 295 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~-G~--~i~ad~VI~a~~~~~ 295 (506)
|++++++++|++|+.+++.|.+...+ ++ ++.||++|+|++...
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 78999999999999988877777643 22 468999999998653
No 260
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.10 E-value=0.00063 Score=66.32 Aligned_cols=52 Identities=23% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHHHHHh-ccCCeeeCCeeEEEEEcCCcEE-EEEcCCcEEEcCEEEEecChhhh
Q 010587 244 LPVINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 244 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
..+.+.+. .|++++.+++|++|+.+++++. |.+.+| +++||+||+|++....
T Consensus 141 ~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 141 KALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 33444433 4889999999999998888764 777777 8999999999998653
No 261
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.09 E-value=3.5e-05 Score=76.89 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=36.2
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|++++++++|++|+. ++.+.|.+.+|+++.+|.||++++..
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 4899999999999986 55677888899899999999999864
No 262
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.07 E-value=4.2e-06 Score=92.60 Aligned_cols=43 Identities=37% Similarity=0.563 Sum_probs=40.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3589999999999999999999999999999999999998854
No 263
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.07 E-value=4e-05 Score=75.96 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=37.6
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
|++++++++|++|+.+++.+.|++.+|+++.+|.||+|++..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 889999999999998777778888899999999999999864
No 264
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.05 E-value=5.9e-06 Score=86.42 Aligned_cols=40 Identities=33% Similarity=0.547 Sum_probs=36.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC-CCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-~~~GG~~ 67 (506)
+|||+|||||++|.+||..+++.|.+|+|+|+. +.+||.|
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC 156 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC 156 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence 689999999999999999999999999999974 4789977
No 265
>PLN02546 glutathione reductase
Probab=98.03 E-value=5e-06 Score=85.69 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=35.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEee---------CCCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~---------~~~~GG~~ 67 (506)
+|||+|||||++|+.||..+++.|.+|+|+|+ ...+||.|
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC 127 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTC 127 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcc
Confidence 58999999999999999999999999999996 24577765
No 266
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.02 E-value=8.5e-06 Score=83.14 Aligned_cols=42 Identities=40% Similarity=0.618 Sum_probs=39.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
..++|+|||||++||+||..|++.|++|+|+|+.+++||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 458999999999999999999999999999999999999875
No 267
>PRK07846 mycothione reductase; Reviewed
Probab=98.02 E-value=5.7e-05 Score=76.55 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=37.3
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.+++++++++|++|+.+++++.|.+.+|+++.+|.||+|++..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCc
Confidence 4788999999999988777777888888899999999999854
No 268
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.02 E-value=5.7e-05 Score=77.08 Aligned_cols=43 Identities=30% Similarity=0.358 Sum_probs=37.6
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|++++++++|++|+.+++++.+++.+|+++++|.||+|++..
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 3889999999999998777788888888899999999999854
No 269
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.02 E-value=6.1e-05 Score=76.88 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=36.9
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCC--cEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G--~~i~ad~VI~a~~~~ 294 (506)
.|++++++++|++|+.+++++.+.+.+| +++.+|.||+|++..
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 3889999999999998878888877777 479999999999854
No 270
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.00 E-value=5.1e-06 Score=79.46 Aligned_cols=34 Identities=35% Similarity=0.549 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~ 62 (506)
||+||||||.+|+.+|.+|+++| .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999654
No 271
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=8.3e-05 Score=72.60 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=34.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CcEEEEeeCCCCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDA--S-FKVVLLESRDRVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~--G-~~V~vlE~~~~~GG~~ 67 (506)
+++|+|||||.+|++.|.+|.+. . ..|.|+|.....|+.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 47999999999999999999985 2 2399999999988654
No 272
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.98 E-value=1.2e-05 Score=83.92 Aligned_cols=43 Identities=33% Similarity=0.523 Sum_probs=40.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
....+|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4568999999999999999999999999999999999999764
No 273
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.97 E-value=4.2e-05 Score=74.82 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=37.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
.++||+|||||.+|.-||.-.+-.|.+|.++|+.|..-|..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 46999999999999999999999999999999988766654
No 274
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=8.5e-05 Score=75.80 Aligned_cols=43 Identities=40% Similarity=0.574 Sum_probs=36.6
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCC---cEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~i~ad~VI~a~~~~ 294 (506)
.|++++++++|++|+.+++++.+.+.+| +++.+|.||+|++..
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 3889999999999998777787777666 679999999999864
No 275
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.94 E-value=0.00011 Score=74.65 Aligned_cols=43 Identities=40% Similarity=0.518 Sum_probs=37.2
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.++++++++.|++|+.+++++.|++.+|+++.+|.||+|++..
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence 4788999999999998777788888888889999999999854
No 276
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=1.9e-05 Score=77.49 Aligned_cols=43 Identities=33% Similarity=0.432 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
...++|+|||||++||++|..|++.|++|+|+|+.+.+||.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 4568999999999999999999999999999999999999764
No 277
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.93 E-value=1e-05 Score=79.50 Aligned_cols=36 Identities=42% Similarity=0.490 Sum_probs=33.4
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCe
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (506)
||+|||||++|+.||+.|++.|++|+|+|+++..|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999998877654
No 278
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.92 E-value=1.2e-05 Score=72.06 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=30.7
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
||+|||||++||+||..|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987553
No 279
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.91 E-value=0.00012 Score=74.11 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 468999999999999999999999999999997654
No 280
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.91 E-value=0.00013 Score=74.04 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+++|||||.+|+-.|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 469999999999999999999999999999986653
No 281
>PRK06116 glutathione reductase; Validated
Probab=97.90 E-value=0.00013 Score=74.23 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=36.8
Q ss_pred ccCCeeeCCeeEEEEEcCCc-EEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|++++++++|++|+.++++ +.|.+.+|+++.+|.||+|++..
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCC
Confidence 38899999999999876554 77888888899999999999753
No 282
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.89 E-value=1.3e-05 Score=81.83 Aligned_cols=40 Identities=40% Similarity=0.584 Sum_probs=35.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC--------CCCeeE
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--------RVGGRV 67 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~--------~~GG~~ 67 (506)
+||++|||||++|+.||+.+++.|.+|+|+|+.. .+||.|
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc 49 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTC 49 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccc
Confidence 5899999999999999999999999999999731 477765
No 283
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.87 E-value=1.5e-05 Score=73.16 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (506)
+++||+|||||++||+||..|+++|.++.|+-.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~ 33 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNR 33 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 479999999999999999999999999999886
No 284
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.86 E-value=0.00017 Score=73.11 Aligned_cols=43 Identities=35% Similarity=0.474 Sum_probs=37.1
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|+++++++.|++|+..++++.|++.+|+++.+|.||+|++..
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCC
Confidence 3889999999999987767777887788889999999999853
No 285
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.86 E-value=1.5e-05 Score=74.60 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=33.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
.....||+|||||++|.+.|+.|+++|.+|.|+|+.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 456799999999999999999999999999999984
No 286
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.85 E-value=2.6e-05 Score=73.03 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=39.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (506)
..+.|+|||+|+||+.+|++|.++ +.+|.|+|+.+.++|..+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 356999999999999999999984 6899999999999999875
No 287
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.84 E-value=0.00018 Score=73.33 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=37.4
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|++++++++|++|+.+++++.|.+.+|+++.+|.||++++..
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC
Confidence 3889999999999987777788888888899999999998753
No 288
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=1.8e-05 Score=80.49 Aligned_cols=37 Identities=32% Similarity=0.525 Sum_probs=34.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
+|+|||||++|++||.+|++.|.+|+|+|++ .+||.|
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccC
Confidence 8999999999999999999999999999985 578866
No 289
>PRK13984 putative oxidoreductase; Provisional
Probab=97.83 E-value=2.9e-05 Score=81.84 Aligned_cols=43 Identities=30% Similarity=0.534 Sum_probs=40.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEE
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (506)
.+.++|+|||||++|++||..|++.|++|+|||+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4578999999999999999999999999999999999999764
No 290
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.82 E-value=2.1e-05 Score=78.02 Aligned_cols=35 Identities=37% Similarity=0.513 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+++||+|||||++|++||+.|+++|.+|+|+|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 36899999999999999999999999999999853
No 291
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.80 E-value=0.00023 Score=72.67 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46999999999999999999999999999997554
No 292
>PRK02106 choline dehydrogenase; Validated
Probab=97.77 E-value=2.6e-05 Score=81.39 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEeeCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD 61 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~ 61 (506)
...+|+||||||.+|+.+|.+|++ .|.+|+|||+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 456999999999999999999999 799999999964
No 293
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.76 E-value=0.00029 Score=71.92 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 478999999999999999999999999999986543
No 294
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.75 E-value=0.00032 Score=71.73 Aligned_cols=36 Identities=31% Similarity=0.601 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+|+|||||.+|+-+|..|++.|.+|+|+|+++++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 479999999999999999999999999999986653
No 295
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.75 E-value=0.00028 Score=72.14 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47999999999999999999999999999998654
No 296
>PRK06370 mercuric reductase; Validated
Probab=97.74 E-value=0.00035 Score=71.26 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 479999999999999999999999999999986654
No 297
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.73 E-value=0.00027 Score=70.96 Aligned_cols=39 Identities=44% Similarity=0.685 Sum_probs=36.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
..+++|||+|..||.+|..|++.|++|+|+|+.+++||.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 589999999999999999999999999999999998874
No 298
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.72 E-value=0.00036 Score=71.10 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 479999999999999999999999999999986653
No 299
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.71 E-value=0.00042 Score=70.53 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
..+++|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46899999999999999999999999999998664
No 300
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.71 E-value=3.5e-05 Score=83.10 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR 62 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~ 62 (506)
++|+|||||++||+||+.|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999765
No 301
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.70 E-value=0.00023 Score=77.03 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=35.0
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|++++++++|++|+.+.. .|.+.+|+++.||++|+|++..
T Consensus 67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence 3889999999999987653 5677888889999999999964
No 302
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00074 Score=64.03 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=41.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeec
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY 71 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~ 71 (506)
.+.|||+|+|-|+.=...+..|+.+|.+|+.+|+|+..||-..|.+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 3459999999999999999999999999999999999999887743
No 303
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.67 E-value=0.00028 Score=76.45 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=35.6
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecCh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 293 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~ 293 (506)
|+++++++.|++|..++....|++.+|+++.+|.||+|++.
T Consensus 196 GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 196 GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 88999999999998655445688889999999999999984
No 304
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.67 E-value=0.00029 Score=76.45 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=34.5
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|+++++++.|++|..+.. .|.+.+|+++.||++|+|++..
T Consensus 72 ~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 72 HGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCC
Confidence 3889999999999987643 5667788889999999999964
No 305
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.67 E-value=0.00051 Score=69.66 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=35.5
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|++++++++|++|+.+++.+.+.+.+| ++.+|.||+|++..
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCC
Confidence 3899999999999998777777777666 68999999998753
No 306
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.65 E-value=0.00054 Score=69.91 Aligned_cols=43 Identities=33% Similarity=0.404 Sum_probs=35.5
Q ss_pred ccCCeeeCCeeEEEEEcCCc-EEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|+++++++.|++|+.++++ +.|.+.+|+++.+|.||+|++..
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence 48899999999999876444 56777778889999999999843
No 307
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.63 E-value=0.00052 Score=69.72 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
..+|+|||||.+|+-+|..|.+.|.+|+++++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 47999999999999999999999999999997553
No 308
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.62 E-value=0.00056 Score=69.08 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=32.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+|+|||||.+|+-+|..|++.|.+|+++++.+++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 469999999999999999999999999999986543
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.62 E-value=0.00059 Score=69.64 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 369999999999999999999999999999986653
No 310
>PRK14727 putative mercuric reductase; Provisional
Probab=97.58 E-value=0.00094 Score=68.37 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=36.3
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
.|++++++++|++|+.+++.+.|.+.++ ++.+|.||+|++...
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCC
Confidence 3889999999999988777777877766 699999999998643
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.56 E-value=0.00057 Score=74.19 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=35.2
Q ss_pred ccCCeeeCCeeEEEEEcC--CcEEEEEcCCcEEEcCEEEEecCh
Q 010587 252 KGLDIRLGHRVTKITRHY--IGVKVTVEGGKTFVADAVVVAVPL 293 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~--~~v~V~~~~G~~i~ad~VI~a~~~ 293 (506)
.|++|++++.|++|..++ ....|.+.+|+++.+|.||+|++.
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 389999999999998653 234588889999999999999984
No 312
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.00022 Score=70.46 Aligned_cols=43 Identities=37% Similarity=0.390 Sum_probs=35.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (506)
+.+||+|||||.||+-||+..++.|.+++++=-+-..=|.+..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msC 45 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSC 45 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeeccc
Confidence 4599999999999999999999999999998776433335443
No 313
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.55 E-value=0.00089 Score=68.79 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=30.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (506)
..+++|||||..|+-.|..|++.|.+|+|+++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 35899999999999999999999999999986
No 314
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.55 E-value=0.00066 Score=68.68 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=32.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 183 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI 183 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 468999999999999999999999999999986643
No 315
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.54 E-value=7.5e-05 Score=77.08 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=33.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+..++|+||||+|.+|.+.|.+|++.|.+|+|||+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 456899999999999999999999889999999995
No 316
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.51 E-value=0.0013 Score=67.06 Aligned_cols=36 Identities=36% Similarity=0.599 Sum_probs=32.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+++|||||.+|+-.|..|++.|.+|+|+|+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 479999999999999999999999999999986654
No 317
>PTZ00058 glutathione reductase; Provisional
Probab=97.48 E-value=0.0013 Score=68.19 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=32.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 57999999999999999999999999999998654
No 318
>PRK14694 putative mercuric reductase; Provisional
Probab=97.47 E-value=0.0014 Score=67.04 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=35.0
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|+++++++.|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCC
Confidence 3889999999999988777666766555 79999999999754
No 319
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.47 E-value=0.0012 Score=67.38 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=35.0
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCC---cEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~i~ad~VI~a~~~~ 294 (506)
+|++|++++.+++|+..++.+.|+..+| +++.+|.||+|++..
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence 3899999999999987766666766555 379999999999853
No 320
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.46 E-value=0.00013 Score=71.52 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=40.0
Q ss_pred HHHHHHh-ccCCeeeCCeeEEEEEcCCcEE-EEEcCC--cEEEcCEEEEecChh
Q 010587 245 PVINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGG--KTFVADAVVVAVPLG 294 (506)
Q Consensus 245 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~i~ad~VI~a~~~~ 294 (506)
.+.+.+. .|++++.+++|++++.++++++ |.+.++ .+++||+||+|++..
T Consensus 268 aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 268 ALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 4445444 3889999999999999888876 665665 389999999999986
No 321
>PRK13748 putative mercuric reductase; Provisional
Probab=97.46 E-value=0.0013 Score=69.06 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=35.7
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
.|++|++++.|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCC
Confidence 3889999999999988777777777666 79999999999853
No 322
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.46 E-value=0.00029 Score=68.25 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=27.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~ 62 (506)
.+|+++||.|+++|+.|..|.+.+ .+++.||+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 589999999999999999999986 89999998664
No 323
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.41 E-value=7.6e-05 Score=67.31 Aligned_cols=42 Identities=26% Similarity=0.631 Sum_probs=36.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCC------CcEEEEeeCCCCCee
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGGR 66 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G------~~V~vlE~~~~~GG~ 66 (506)
+...++|+||||||.|..+||+|++.+ ..|+|||.....||.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 345689999999999999999999987 689999998777765
No 324
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.35 E-value=0.00015 Score=75.21 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=30.2
Q ss_pred eEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 010587 30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~ 61 (506)
|+||||||.+|+.+|.+|+++| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 6999999964
No 325
>PLN02785 Protein HOTHEAD
Probab=97.34 E-value=0.00024 Score=73.93 Aligned_cols=35 Identities=37% Similarity=0.566 Sum_probs=32.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...||+||||||.+|+.+|.+|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 457999999999999999999999 68999999964
No 326
>PLN02546 glutathione reductase
Probab=97.30 E-value=0.0027 Score=65.72 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 46999999999999999999999999999998654
No 327
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0056 Score=57.59 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=41.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeec
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY 71 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~ 71 (506)
..+||+|+|-|+.=...+..|+-+|.+|+.+|+|+..|+-..|.+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt 49 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT 49 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccccee
Confidence 479999999999999999999999999999999999999887743
No 328
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.27 E-value=0.0027 Score=66.82 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 358999999999999999999999999999987654
No 329
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.24 E-value=0.0026 Score=64.09 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.1
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecCh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 293 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~ 293 (506)
.|++++++++|++|+.+ .|.+++|+++.+|.||++++.
T Consensus 241 ~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCC
Confidence 38999999999999743 366788989999999999874
No 330
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.21 E-value=0.0078 Score=57.60 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=31.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRD 61 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~ 61 (506)
++.+||+|||||+.|++.|..|... -.||.++|..+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 4489999999999999999999864 46899999863
No 331
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.21 E-value=0.00085 Score=62.94 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=37.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHC----CCcEEEEeeCCCCCeeEEe
Q 010587 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHT 69 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s 69 (506)
.+.+-|||+|+|||++|..|-+. |.++.|+|.-+..||....
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 57899999999999999999986 6789999999999997644
No 332
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.20 E-value=0.00034 Score=64.12 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC-CC-cEEEEeeCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRD 61 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~-~V~vlE~~~ 61 (506)
..+.+.|+|||||-+|++.|..+.++ |. +|.|+|-.+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 34689999999999999999999986 55 698998644
No 333
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.16 E-value=0.00049 Score=68.68 Aligned_cols=42 Identities=12% Similarity=0.295 Sum_probs=34.8
Q ss_pred ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChhh
Q 010587 252 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 295 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~~ 295 (506)
.++++++++.|++|..++. .|.+.+|+++.||++|+|++...
T Consensus 71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 4789999999999988654 45667888999999999998653
No 334
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.14 E-value=0.00058 Score=68.76 Aligned_cols=37 Identities=27% Similarity=0.637 Sum_probs=32.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
..++++|+|||||.+|+++|..|.+.+.+|+|+|+++
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 3467899999999999999999987788999999865
No 335
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.10 E-value=0.0045 Score=64.01 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+|+|||||.+|+-+|..|++.|.+|+|+|..+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 35799999999999999999999999999998643
No 336
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0012 Score=61.02 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (506)
.-.||.+|||||.+||+||-+.+..|.+|.++|.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 3679999999999999999999999999999996
No 337
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.88 E-value=0.0097 Score=58.06 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=36.2
Q ss_pred HHHHHHHh-----ccCCeeeCCeeEEEEEcCCcEEEEEcCC-cEEEcCEEEEecCh
Q 010587 244 LPVINTLA-----KGLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPL 293 (506)
Q Consensus 244 ~~l~~~l~-----~g~~i~~~~~V~~I~~~~~~v~V~~~~G-~~i~ad~VI~a~~~ 293 (506)
+.++++|. .|++|+++++|++| +++++.|.+.++ .+++||+||+|++-
T Consensus 86 ~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 86 APLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 44555553 39999999999999 444577776543 46999999999984
No 338
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0007 Score=62.85 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeE
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (506)
..|||+|||||++|-+||.+.+++|++.-|+- +|.||..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQv 248 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQV 248 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCee
Confidence 57999999999999999999999999865543 5677753
No 339
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0015 Score=60.36 Aligned_cols=35 Identities=37% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
...|-|||||++|.-|||.+++.|++|.++|=++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 46799999999999999999999999999997653
No 340
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0022 Score=62.15 Aligned_cols=56 Identities=36% Similarity=0.443 Sum_probs=42.5
Q ss_pred cccchhhhhhhhhhhcccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC-CCCC
Q 010587 3 SASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVG 64 (506)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-~~~G 64 (506)
|.++|.+-.|+-.+.++ ...+||+|||||.||.-||...++.|.+.+++-.+ +++|
T Consensus 9 ~~~~s~~~~Rr~~~~s~------~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 9 SSSTSFPLPRRCVFSSS------TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred hhhccCcchhhhhcccC------CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 45566664455544433 46799999999999999999999999998888776 4444
No 341
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.61 E-value=0.0028 Score=62.88 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=31.8
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
|++++++++|++|+.++. .|++ +|.++.||++|+|++..
T Consensus 72 gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred CCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCC
Confidence 788999999999988655 3444 56689999999999964
No 342
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0066 Score=53.01 Aligned_cols=45 Identities=31% Similarity=0.452 Sum_probs=37.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEee---CC-CCCeeEEe
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLES---RD-RVGGRVHT 69 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~---~~-~~GG~~~s 69 (506)
+..+-+|+|||+|+++-+||.+++++..+-+|||- ++ -+||.+.|
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 34456899999999999999999999999999995 23 35777755
No 343
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.35 E-value=0.0043 Score=63.06 Aligned_cols=38 Identities=34% Similarity=0.497 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEeeCCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDR 62 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~ 62 (506)
....||.+|||||-||...|.+|++. ..+|+|+|+...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 35679999999999999999999997 679999999543
No 344
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.34 E-value=0.0037 Score=61.68 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=33.0
Q ss_pred HHHh-ccCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecChh
Q 010587 248 NTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 294 (506)
Q Consensus 248 ~~l~-~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~~ 294 (506)
+.|. .|++++++++|++|+.. .|.+.+|+++.+|.||+|++..
T Consensus 199 ~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 199 RLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCC
Confidence 3343 38899999999988532 4666788889999999999853
No 345
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.0059 Score=62.68 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=37.2
Q ss_pred hhhhhcccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 13 RALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 13 ~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
+|+....+.. +..+|+|||+|.+|+++|..|++.|++|+++|+++.
T Consensus 5 ~~~~~~~~~~----~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 5 PGLTSWHSDW----QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred cchhhcccCc----CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4555555443 346899999999999999999999999999997653
No 346
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.24 E-value=0.13 Score=49.98 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=30.9
Q ss_pred cCCeeeCCeeEEEEEcC-CcEEEEEcC---C--cEEEcCEEEEecChh
Q 010587 253 GLDIRLGHRVTKITRHY-IGVKVTVEG---G--KTFVADAVVVAVPLG 294 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~-~~v~V~~~~---G--~~i~ad~VI~a~~~~ 294 (506)
.++|+.+++|++++..+ +++.+++.+ | .++++|.||+||+..
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 46799999999999988 488877765 2 378999999999853
No 347
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.19 E-value=0.0062 Score=51.94 Aligned_cols=32 Identities=38% Similarity=0.472 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+|+|||||-.|.+.|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999854
No 348
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.07 E-value=0.058 Score=53.15 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=25.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHH----CC--CcEEEE
Q 010587 28 SPSVIVIGAGMAGVAAARALHD----AS--FKVVLL 57 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~----~G--~~V~vl 57 (506)
..+|+|||+|.+|+-+|..|++ .| .+|+|+
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4699999999999999999985 34 368887
No 349
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.04 E-value=0.0093 Score=52.07 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=27.8
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+|+|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999843
No 350
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.96 E-value=0.059 Score=52.89 Aligned_cols=45 Identities=33% Similarity=0.437 Sum_probs=38.7
Q ss_pred ccCCeeeCCeeEEEEEcC-CcE-EEEEcCCcEEEcCEEEEecChhhh
Q 010587 252 KGLDIRLGHRVTKITRHY-IGV-KVTVEGGKTFVADAVVVAVPLGVL 296 (506)
Q Consensus 252 ~g~~i~~~~~V~~I~~~~-~~v-~V~~~~G~~i~ad~VI~a~~~~~~ 296 (506)
+|+++++++.+.+++.+. +++ .|.+.+|+++.||.||+.++....
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 489999999999998765 455 499999999999999999997653
No 351
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.0088 Score=61.02 Aligned_cols=34 Identities=38% Similarity=0.556 Sum_probs=31.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
.|+|||.|.+|++||..|++.|++|+++|+++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999987654
No 352
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.87 E-value=0.0089 Score=52.36 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=26.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
++|+|||.|..||..|..|+++|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 579999999999999999999999999999854
No 353
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.82 E-value=0.0074 Score=55.14 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=27.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-------CcEEEEee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDAS-------FKVVLLES 59 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G-------~~V~vlE~ 59 (506)
+.++|+|||+|+.||++|+.+.+.+ .+|+|++-
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 4689999999999999999988843 56888873
No 354
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.80 E-value=0.12 Score=54.15 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=34.8
Q ss_pred HHHHHHh-ccCCeeeCCeeEEEEEc-CCcEE-EE---EcCCc--EEEcCEEEEecCh
Q 010587 245 PVINTLA-KGLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPL 293 (506)
Q Consensus 245 ~l~~~l~-~g~~i~~~~~V~~I~~~-~~~v~-V~---~~~G~--~i~ad~VI~a~~~ 293 (506)
.|.+.+. .|++|+.++.++++..+ +++|. |. ..+|+ .+.|+.||+|++-
T Consensus 131 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 131 TLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 3444333 38899999999999875 55554 32 24665 5789999999974
No 355
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.68 E-value=0.016 Score=51.77 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=35.1
Q ss_pred hhhhhcccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 13 RALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 13 ~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
..++......+..-+..+|+|||+|.|+.-+|..|++.|.+|+++=+++
T Consensus 152 ~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 152 PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3344444444333456999999999999999999999999999997754
No 356
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.62 E-value=0.018 Score=57.72 Aligned_cols=41 Identities=44% Similarity=0.579 Sum_probs=36.5
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCc--EEEcCEEEEecCh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGK--TFVADAVVVAVPL 293 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~--~i~ad~VI~a~~~ 293 (506)
|++++++++|++++..++++.+++++|+ ++++|.|++|++=
T Consensus 228 gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred CeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence 6899999999999998877888888876 6899999999983
No 357
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.52 E-value=0.017 Score=55.37 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.+|+|||+|..|.+.|..|+++|++|+++|++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999864
No 358
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.46 E-value=0.019 Score=52.94 Aligned_cols=56 Identities=32% Similarity=0.527 Sum_probs=43.9
Q ss_pred hhhhhcccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC--------CCCCeeEEeec
Q 010587 13 RALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR--------DRVGGRVHTDY 71 (506)
Q Consensus 13 ~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~--------~~~GG~~~s~~ 71 (506)
+|.++...... .+-+|+|||||..|.-||....-.|.+|+++|.+ +..|||+.+..
T Consensus 156 ~GvllgGvpGV---~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 156 KGVLLGGVPGV---LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ceeEecCCCCC---CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 44455444433 5679999999999999999999999999999987 45678876643
No 359
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.42 E-value=0.98 Score=46.85 Aligned_cols=45 Identities=27% Similarity=0.231 Sum_probs=35.4
Q ss_pred hccCCeeeCCeeEEEEEcCCcEE-EEE---cCCc--EEEcCEEEEecChhh
Q 010587 251 AKGLDIRLGHRVTKITRHYIGVK-VTV---EGGK--TFVADAVVVAVPLGV 295 (506)
Q Consensus 251 ~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~G~--~i~ad~VI~a~~~~~ 295 (506)
..|++|+.+++|++|+.+++++. |++ .+|+ +++|+.||+|+++..
T Consensus 140 ~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 34999999999999998877653 443 2343 789999999999765
No 360
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.33 E-value=0.026 Score=47.69 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
|+|||+|..|+..|++|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999854
No 361
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.29 E-value=0.024 Score=53.53 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...|+|||+|..|...|..|++.|++|+++|.++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3589999999999999999999999999999854
No 362
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.14 E-value=0.048 Score=56.41 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=35.4
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCcEEEcCEEEEecCh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 293 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VI~a~~~ 293 (506)
|+++++++.++.|..++....|..+||..+.||.||+|++.
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc
Confidence 88999999999888755445699999999999999999974
No 363
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.11 E-value=0.036 Score=47.79 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=29.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
++..|+|+|+|.+|+.||..|...|.+|+++|.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4689999999999999999999999999999974
No 364
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.00 E-value=0.035 Score=53.06 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...|+|||+|..|..-|..++..|++|+++|.++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4679999999999999999999999999999754
No 365
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.98 E-value=0.034 Score=56.59 Aligned_cols=34 Identities=35% Similarity=0.647 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.++|+|||+|.+|+.+|..|++.|++|+++|.++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5789999999999999999999999999999864
No 366
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.94 E-value=0.035 Score=52.63 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=30.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
.+|+|||+|..|.+.|..|+++|++|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 57999999999999999999999999999974
No 367
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.92 E-value=0.14 Score=57.23 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (506)
...+|+|||+|..|+-.|..|++.|. .|+|+|..
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 35799999999999999999999995 58899863
No 368
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.89 E-value=0.044 Score=52.13 Aligned_cols=33 Identities=33% Similarity=0.354 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
..+|+|||+|..|...|..|+++|++|+++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467999999999999999999999999999974
No 369
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.84 E-value=0.39 Score=46.45 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=32.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~ 61 (506)
+.+.+|++.||-|++-|+.|..|.+.+ .+++.||+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 456799999999999999999999975 7899999865
No 370
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.75 E-value=0.037 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 469999999999999999999999999999854
No 371
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.67 E-value=0.04 Score=52.88 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=30.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
++|.|||+|..||+.|..|++.|++|+.+|..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 47999999999999999999999999999974
No 372
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.62 E-value=0.062 Score=46.09 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCCeEEEECCCH-HHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGM-AGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGi-aGL~aA~~L~~~G~~V~vlE~~ 60 (506)
..++|+|||+|- +|..+|.+|.+.|.+|+|+.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 579999999995 7999999999999999999974
No 373
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.58 E-value=0.06 Score=48.02 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
...|+|||||-.|+..|..|.+.|.+|+|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 469999999999999999999999999999864
No 374
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.035 Score=53.10 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=43.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCeeEEeecCC
Q 010587 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF 73 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~ 73 (506)
+..+||||||.|+.-...|...++.|.+|+=+|.+...||...|+...
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 468999999999999999999999999999999999999998886543
No 375
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.55 E-value=0.043 Score=42.90 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+...|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4689999999999999999999999999999875
No 376
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.05 Score=49.33 Aligned_cols=33 Identities=36% Similarity=0.656 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
++++|||+|--|.+.|..|.+.|++|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999854
No 377
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.53 E-value=0.058 Score=51.62 Aligned_cols=33 Identities=30% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
.++|+|||+|-.|...|++|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999985
No 378
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.52 E-value=0.064 Score=51.56 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
++++|+|||+|.-|.+.|..|+++|++|+++.+++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999999999999998753
No 379
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.41 E-value=0.057 Score=52.70 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+++|+|||+|..|.+.|..|+++|++|++++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 467999999999999999999999999999974
No 380
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.37 E-value=0.068 Score=50.92 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
....|+|||+|..|...|..|++.|++|.++|.+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 44679999999999999999999999999999754
No 381
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.30 E-value=0.066 Score=51.46 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+..+|+|||+|..|.+.|..|++.|++|+++|.+.
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45689999999999999999999999999999743
No 382
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.24 E-value=0.052 Score=47.58 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=34.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+.+.+.|.|||||..|.-.|-..+..|++|.|++++.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 4578999999999999999999999999999999854
No 383
>PRK10262 thioredoxin reductase; Provisional
Probab=94.08 E-value=0.087 Score=50.91 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 57999999999999999999999999999998653
No 384
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.04 E-value=0.065 Score=50.92 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
..|+|||+|..|...|..|++.|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999744
No 385
>PLN02507 glutathione reductase
Probab=94.04 E-value=0.081 Score=54.43 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (506)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++-
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 4689999999999999999999999999999977643
No 386
>PRK04148 hypothetical protein; Provisional
Probab=94.02 E-value=0.067 Score=43.59 Aligned_cols=35 Identities=17% Similarity=0.523 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
+...+++||.| .|...|..|++.|++|+.+|-++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 34789999999 999999999999999999997654
No 387
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.90 E-value=0.13 Score=42.49 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc-EEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~ 60 (506)
+..+++|||+|-+|-.+++.|++.|.+ |+|+-|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 568999999999999999999999986 9999874
No 388
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.87 E-value=0.089 Score=53.40 Aligned_cols=35 Identities=34% Similarity=0.384 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34799999999999999999999999999999854
No 389
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.87 E-value=0.081 Score=50.65 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=29.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+|+|||+|-.|.+.|..|++.|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999974
No 390
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.86 E-value=0.08 Score=50.07 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.+|+|||+|..|.+.|..|++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999743
No 391
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.86 E-value=0.089 Score=54.50 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
...+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 357999999999999999999999999999987553
No 392
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.83 E-value=0.089 Score=54.97 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=33.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
...+|+|||||.+|+-.|..|++.|.+|+++++.+++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 3579999999999999999999999999999997753
No 393
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.69 E-value=0.091 Score=50.34 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (506)
++|+|||+|..|.+.|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 394
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.65 E-value=0.11 Score=49.46 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=29.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (506)
+.|+|||+|..|.+.|+.|+..|+ +|+++|..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999843
No 395
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.64 E-value=0.042 Score=49.43 Aligned_cols=32 Identities=34% Similarity=0.596 Sum_probs=27.1
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCcEEEEeeCCC
Q 010587 31 VIVIGAGMAGVAAARALHDA--SFKVVLLESRDR 62 (506)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~ 62 (506)
.+||||||||.+||-.|+.. ...|+++-+++.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 58999999999999999985 557888887553
No 396
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.62 E-value=0.11 Score=50.25 Aligned_cols=33 Identities=33% Similarity=0.326 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
.++|+|||+|.-|...|..|++.|++|++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 458999999999999999999999999999984
No 397
>PRK12831 putative oxidoreductase; Provisional
Probab=93.56 E-value=0.11 Score=52.96 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45799999999999999999999999999999744
No 398
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.56 E-value=0.086 Score=52.74 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.++|+|||.|..|+..|..|+++|++|+++|.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 3679999999999999999999999999999754
No 399
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.55 E-value=0.11 Score=49.80 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~ 61 (506)
++|+|||+|..|.++|+.|+..| ..|.++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 36999999999999999999999 4799999853
No 400
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.50 E-value=0.1 Score=53.51 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+..+|+|||+|..|...|..|+++|++|+|+|.+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3457999999999999999999999999999975
No 401
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.44 E-value=0.12 Score=50.86 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
...+|+|||+|..|+.+|..|...|.+|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3567999999999999999999999999999974
No 402
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.42 E-value=0.13 Score=49.21 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+.++|.|||+|..|.+.|..|+++|++|.++.++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45689999999999999999999999999999854
No 403
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.37 E-value=0.12 Score=50.55 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~ 61 (506)
..+|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36899999999999999999999987 99998743
No 404
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.36 E-value=0.14 Score=45.49 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+...|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999753
No 405
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.31 E-value=0.13 Score=44.07 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=28.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+.+|.|||-|..|...|.+|.++|++|.+++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 468999999999999999999999999999975
No 406
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.24 E-value=0.11 Score=52.90 Aligned_cols=34 Identities=29% Similarity=0.169 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...|+|+|.|.+|.+||..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4579999999999999999999999999999754
No 407
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.23 E-value=0.14 Score=48.75 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 34699999999999999999999999999999854
No 408
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.20 E-value=0.11 Score=51.80 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=33.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (506)
.+.|+|+|-|.+|++||..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 689999999999999999999999999999976655
No 409
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.14 E-value=0.17 Score=43.01 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLE 58 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE 58 (506)
+...|+|||||-.|+.-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 46889999999999999999999999999995
No 410
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.14 E-value=0.14 Score=49.63 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
++|+|||+|..|...|..|++.|++|++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 57999999999999999999999999999985
No 411
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.09 E-value=0.13 Score=52.46 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
..+|+|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3579999999999999999999999999999764
No 412
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.08 E-value=0.1 Score=52.22 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=30.2
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+|.|||.|..|+..|..|++.|++|++++.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 69999999999999999999999999999864
No 413
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.93 E-value=0.16 Score=45.07 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (506)
+.+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5789999999999999999999999 69999973
No 414
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.77 E-value=0.18 Score=51.28 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (506)
.+.|+|+|.|-+|+++|..|++.|.+|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997654
No 415
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.1 Score=49.02 Aligned_cols=41 Identities=37% Similarity=0.400 Sum_probs=32.7
Q ss_pred cccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 010587 18 SNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (506)
Q Consensus 18 ~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (506)
..|+.| -=+.+||+|||||-||.-||.-|+--=..|+|+|=
T Consensus 345 PHCDGP-LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF 385 (520)
T COG3634 345 PHCDGP-LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 385 (520)
T ss_pred CCCCCc-ccCCceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence 456666 34479999999999999999999854346999994
No 416
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.61 E-value=0.17 Score=52.02 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
...|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999964
No 417
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.58 E-value=0.18 Score=51.71 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+...|.|||+|..|...|..|+++|++|+|+|.+.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 34679999999999999999999999999999754
No 418
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.57 E-value=0.18 Score=51.29 Aligned_cols=35 Identities=37% Similarity=0.477 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+|+|+|+|..||.|+..+...|.+|.++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999999999999999999743
No 419
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.49 E-value=0.18 Score=51.65 Aligned_cols=33 Identities=36% Similarity=0.514 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
-..|.|||+|..|...|..|+++|++|+|+|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 467999999999999999999999999999976
No 420
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.37 E-value=0.17 Score=51.20 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=28.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeeC
Q 010587 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESR 60 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~ 60 (506)
++|+|||.|..|+..|..|+++| ++|+.+|.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 57999999999999999999985 779999964
No 421
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.36 E-value=0.2 Score=48.57 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=29.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+|.|||+|--|.+.|..|+++|++|.++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999999999999874
No 422
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.31 E-value=0.19 Score=51.14 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...|+|+|+|-+|+++|..|++.|.+|.+.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999999999999999653
No 423
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.08 E-value=0.21 Score=48.66 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~ 60 (506)
+++|+|||+|-.|.++|+.|++.| .+|+|-+++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 478999999999999999999999 799999986
No 424
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.07 E-value=0.18 Score=41.64 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
+.+|+|||+|-.|...|..|++.|. +++|+|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 4789999999999999999999998 7999996
No 425
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.06 E-value=0.42 Score=47.34 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=31.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+||+|||||++|+++|+.|++.|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999864
No 426
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.02 E-value=0.25 Score=47.42 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (506)
+.+|+|||+|..|.+.|+.|+..|. +|.++|.+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 3689999999999999999999876 899999854
No 427
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.00 E-value=0.36 Score=36.22 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=29.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLES 59 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~ 59 (506)
...+++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999999999999999998 578999987
No 428
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=91.95 E-value=2 Score=45.12 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=35.5
Q ss_pred HHHHHHh-ccCCeeeCCeeEEEEEcCCcEE-EE---EcCCc--EEEcCEEEEecCh
Q 010587 245 PVINTLA-KGLDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPL 293 (506)
Q Consensus 245 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-V~---~~~G~--~i~ad~VI~a~~~ 293 (506)
.|.+.+. .|++|+.++.|+++..++++|. |. ..+|+ .+.|+.||+|++-
T Consensus 124 ~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG 179 (565)
T TIGR01816 124 TLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGG 179 (565)
T ss_pred HHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence 3444333 3889999999999987777654 32 23564 6789999999974
No 429
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.92 E-value=0.29 Score=43.51 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+.+.|+|+|.|-.|..+|..|.+.|.+|++.|.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3578999999999999999999999999999875
No 430
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.82 E-value=0.3 Score=46.90 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDR 62 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~ 62 (506)
++.+|+|||+|-.|.+.|+.|+..|+ ++.|+|.++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 45789999999999999999999996 8999998653
No 431
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=91.79 E-value=0.16 Score=49.89 Aligned_cols=39 Identities=36% Similarity=0.507 Sum_probs=33.3
Q ss_pred cCCeeeCCeeEEEEEcCCcEEEEEcCCc-EEEcCEEEEecChhh
Q 010587 253 GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLGV 295 (506)
Q Consensus 253 g~~i~~~~~V~~I~~~~~~v~V~~~~G~-~i~ad~VI~a~~~~~ 295 (506)
|++|++++.|++|+.++ |++.+|+ +|.++.||.|++...
T Consensus 223 GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 223 GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcC
Confidence 99999999999998753 6777776 499999999998654
No 432
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.78 E-value=0.26 Score=50.26 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (506)
...+|+|||||..|+-+|..|.+.|. +|+|+++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45799999999999999999999998 899999743
No 433
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.72 E-value=0.28 Score=48.59 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+|+|+|+|..|+.+|..+...|.+|+|+|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 35799999999999999999999999999999754
No 434
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.66 E-value=0.3 Score=46.39 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+|+|||.|..|..+|..|...|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46899999999999999999999999999999863
No 435
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.66 E-value=0.23 Score=50.71 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCHHHHH-HHHHHHHCCCcEEEEeeCCC
Q 010587 26 ARSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRDR 62 (506)
Q Consensus 26 ~~~~dv~IIGaGiaGL~-aA~~L~~~G~~V~vlE~~~~ 62 (506)
.+.+.|.|||.|-+|++ +|..|.+.|++|++.|.+..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 34568999999999999 59999999999999997543
No 436
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.65 E-value=0.24 Score=46.67 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=29.2
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+|.|||.|..|.+.|..|.++|++|.+++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 6999999999999999999999999999974
No 437
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.53 E-value=0.25 Score=46.65 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
...|+|||||..|-..|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 478999999999999999999988999999986
No 438
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.51 E-value=0.25 Score=53.16 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...|+|||||..|...|+.++..|++|+++|.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999999999999999999864
No 439
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.48 E-value=0.25 Score=53.00 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
....|+|||||..|...|+.++.+|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45689999999999999999999999999999854
No 440
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.45 E-value=0.26 Score=48.70 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=27.9
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988885 99999999854
No 441
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.35 E-value=0.29 Score=53.29 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc-EEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~ 61 (506)
...+|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 357999999999999999999999987 99999754
No 442
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.35 E-value=0.28 Score=46.81 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
++|.|+|+|.-|...|++|+++|..|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999997788777644
No 443
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.34 E-value=0.34 Score=47.76 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=32.0
Q ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 26 ARSPSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 26 ~~~~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+....|+||| .|..|-+.|..|.+.|+.|.+++++
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 4568899999 8999999999999999999999974
No 444
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.26 E-value=0.34 Score=43.96 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=30.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc---EEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFK---VVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~---V~vlE~~ 60 (506)
+..+|+|+|+|-+|..+|..|.+.|.+ |.|++++
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 457899999999999999999999974 8888874
No 445
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.21 E-value=0.33 Score=45.02 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
+...|+|||.|-.|..+|..|++.|. +++|+|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 46799999999999999999999996 7999996
No 446
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.19 E-value=0.44 Score=39.67 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=29.2
Q ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--cEEEEeeCC
Q 010587 29 PSVIVIGA-GMAGVAAARALHDASF--KVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGa-GiaGL~aA~~L~~~G~--~V~vlE~~~ 61 (506)
.+|+|||+ |-.|.+.|+.|...+. ++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999875 699999863
No 447
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.19 E-value=0.26 Score=50.03 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
...|+|+|.|.+|.+||..|.+ |.+|+|.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4689999999999999999995 9999999954
No 448
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.00 E-value=0.36 Score=45.55 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (506)
...+|+|||+|-+|-++|+.|++.|. +|+|++++
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999997 79999875
No 449
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.92 E-value=0.31 Score=50.31 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...|.|||.|.+|+++|..|.+.|++|.+.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 450
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.84 E-value=0.37 Score=43.57 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=27.6
Q ss_pred eEEEEC-CCHHHHHHHHHHHHCCCcEEEEee
Q 010587 30 SVIVIG-AGMAGVAAARALHDASFKVVLLES 59 (506)
Q Consensus 30 dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~ 59 (506)
+|.||| +|.-|.+.|..|++.|++|.++.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 699997 799999999999999999998875
No 451
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.77 E-value=0.43 Score=45.62 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~ 61 (506)
++.+|+|||+|-.|.++|+.|+..|. .+.|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 35799999999999999999999886 699999754
No 452
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.73 E-value=0.34 Score=49.51 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
...|.|+|.|-+|+++|..|.+.|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 356999999999999999999999999999964
No 453
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.68 E-value=0.41 Score=45.21 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+++|||.|-.|.+.|..|...|.+|+|++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35799999999999999999999999999999854
No 454
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=90.66 E-value=0.15 Score=48.71 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=35.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCCCCCee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (506)
+...+|||||+.||-.+..-.+.|.+|+++|.-+.+||.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 478999999999999999999999999999998888863
No 455
>PLN02602 lactate dehydrogenase
Probab=90.65 E-value=0.51 Score=45.83 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=29.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~ 61 (506)
.+|+|||+|-.|.++|+.|+..|. .+.|+|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999998886 599999754
No 456
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.58 E-value=0.3 Score=52.58 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+...|+|||||..|...|+.++..|++|+++|.++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 44689999999999999999999999999999854
No 457
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.52 E-value=0.39 Score=48.85 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=32.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
|+..-.|+|||.|-+|+++|..|.+.|++|++.|.++
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 3455689999999999999999999999999999754
No 458
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.43 E-value=0.48 Score=48.15 Aligned_cols=35 Identities=37% Similarity=0.502 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+..+|+|+|+|..|+.++..+...|.+|.++|.+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45899999999999999999999999999999744
No 459
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.38 E-value=0.51 Score=45.26 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC--cEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~ 61 (506)
...+|+|||+|-.|.++|+.|+..|. .+.|+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45799999999999999999999987 699999743
No 460
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.38 E-value=0.51 Score=37.61 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=27.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
|+|+|.|-.|...|..|.+.+.+|+++|.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7899999999999999999777999999864
No 461
>PLN02256 arogenate dehydrogenase
Probab=90.27 E-value=0.49 Score=45.06 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+..+|+|||.|..|-+.|..|.+.|.+|.+++.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 5678999999999999999999999999999875
No 462
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.25 E-value=0.45 Score=45.56 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=29.0
Q ss_pred eEEEECCCHHHHHHHHHHHHCC--CcEEEEeeCC
Q 010587 30 SVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~ 61 (506)
.|+|||+|-.|.+.|+.|+..| .++.++|.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 4799999854
No 463
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.19 E-value=0.35 Score=46.12 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 010587 31 VIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (506)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (506)
|+|||+|..|.+.|+.|+..|+ +|.++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999877 999999864
No 464
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.10 E-value=0.37 Score=51.73 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHH-HCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~ 61 (506)
+...|+|||||..|...|..++ +.|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4468999999999999999998 5899999999864
No 465
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.90 E-value=0.55 Score=45.19 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~ 61 (506)
++.+|+|||||-.|.+.|+.|+..| .++.|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4579999999999999999999998 4899999854
No 466
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.86 E-value=0.55 Score=46.67 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
....|+|+|.|..|..+|..|...|.+|+|+|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 46799999999999999999999999999999754
No 467
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.86 E-value=0.48 Score=45.14 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.+|.|||.|..|...|..|++.|++|.+++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998753
No 468
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.79 E-value=0.53 Score=42.24 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=29.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
..+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~ 60 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDF 60 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 5789999999999999999999998 5999996
No 469
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.75 E-value=0.6 Score=41.95 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEe
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLE 58 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE 58 (506)
+...|+|||||-.++.=+..|.+.|.+|+|+=
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 46899999999999999999999999999994
No 470
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.64 E-value=0.55 Score=46.38 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
....|+|||.|..|..+|..|...|.+|+|+|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 46799999999999999999999999999999744
No 471
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.63 E-value=0.47 Score=45.19 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.+|.|||.|.-|...|..|++.|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999998753
No 472
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=89.62 E-value=0.4 Score=45.53 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.4
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+|.|||.|..|...|..|++.|++|.+++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998753
No 473
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.59 E-value=0.63 Score=41.17 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=30.0
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+..+++|+|| |..|..+|..|++.|.+|.++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3578999997 999999999999999999998753
No 474
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.59 E-value=0.42 Score=51.43 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHH-HCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~ 61 (506)
.-..|+|||||..|...|+.++ ..|++|+++|.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3578999999999999999999 8899999999853
No 475
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.55 E-value=0.13 Score=49.85 Aligned_cols=50 Identities=28% Similarity=0.395 Sum_probs=0.0
Q ss_pred hhhhhcccCCCCCCCCCeEEEECCCHHHHHHHHHHH--------------HCCCcEEEEeeCCCC
Q 010587 13 RALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALH--------------DASFKVVLLESRDRV 63 (506)
Q Consensus 13 ~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~--------------~~G~~V~vlE~~~~~ 63 (506)
++.++...++. .+....++|||||++|.-.|.+|+ +.-.+|+++|+.|.+
T Consensus 204 ~a~~~~l~~ee-rkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 204 KAELPGLSDEE-RKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred HhhcCCCChHH-hhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
No 476
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.50 E-value=0.48 Score=47.65 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.+|+|||-|.+|+++|..|.+.|.+|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999643
No 477
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.43 E-value=0.53 Score=52.24 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
...+|+|||||.+|+-||..+.+.|.+|+++.+.+
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 35799999999999999999999999999998754
No 478
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.28 E-value=0.62 Score=43.69 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
+...++|+|+|-+|.++|+.|++.|.+|+|+.++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999999999999999999999874
No 479
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.24 E-value=0.47 Score=48.39 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (506)
..+|.|||.|-+|+++|..|.+.|++|.+.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 357999999999999999999999999999964
No 480
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.13 E-value=0.47 Score=48.20 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+.++|+|||+|.+|+=.|..|++.+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 46899999999999999999999999999998743
No 481
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.06 E-value=0.64 Score=42.79 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
++.+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35899999999999999999999997 7999986
No 482
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.99 E-value=0.51 Score=47.87 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.+|.|||.|..|...|..|+++|++|.|++++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 589999999999999999999999999999853
No 483
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.99 E-value=0.77 Score=38.78 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=30.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CcEEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~ 60 (506)
+..+++|||+|..|.+.|..|.+.| .+|.+++++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3578999999999999999999986 789999875
No 484
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=88.86 E-value=0.75 Score=43.57 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc-EEEEeeC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESR 60 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~ 60 (506)
+.+.++|+|||=+|.++|+.|++.|.+ |.|+.++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 357899999999999999999999986 9999874
No 485
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.79 E-value=0.6 Score=39.42 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=27.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
-+.++|+|=|.-|-.+|..|...|.+|+|.|..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4789999999999999999999999999999844
No 486
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.74 E-value=0.65 Score=44.96 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=30.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
..+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5789999999999999999999998 7999997
No 487
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.72 E-value=0.54 Score=51.64 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHH-HHHHHHCCCcEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAA-ARALHDASFKVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~a-A~~L~~~G~~V~vlE~~~ 61 (506)
+...|.|||.|-+|+++ |..|.+.|++|++.|.+.
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 45679999999999999 999999999999999754
No 488
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.67 E-value=0.66 Score=44.92 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
+.+|+|||+|--|..+|..|++.|. +++|+|.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 5789999999999999999999998 8999997
No 489
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.65 E-value=0.69 Score=42.40 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=29.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
..+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5789999999999999999999997 6999886
No 490
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.57 E-value=0.71 Score=49.28 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEeeCC
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (506)
...+|+|||||..|+-+|..|.+.|. +|+|+++.+
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 599998744
No 491
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=88.50 E-value=0.5 Score=38.95 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=27.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
++|+|||..+.+.|..++..|++|+|+|-++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999753
No 492
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=88.49 E-value=1.4 Score=44.17 Aligned_cols=49 Identities=16% Similarity=-0.025 Sum_probs=37.2
Q ss_pred HHHHHh-ccCCeeeCCeeEEEEEcCCcEEE-EEcCCc--EEEcCEEEEecChh
Q 010587 246 VINTLA-KGLDIRLGHRVTKITRHYIGVKV-TVEGGK--TFVADAVVVAVPLG 294 (506)
Q Consensus 246 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~V-~~~~G~--~i~ad~VI~a~~~~ 294 (506)
+.+.+. .|++++++++|++++.+++++.+ .+.+|+ ++++|.||+|++-.
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 344443 48899999999999988877763 444553 58999999999864
No 493
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.30 E-value=0.76 Score=39.79 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=28.0
Q ss_pred eEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 30 SVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
+|+|||+|-.|...|..|++.|. +++++|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999998 5999997
No 494
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.27 E-value=0.33 Score=39.39 Aligned_cols=35 Identities=46% Similarity=0.473 Sum_probs=27.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEee
Q 010587 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (506)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (506)
+..+.+|.|||+|-.|-+.|..|.++|+.|.-+..
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 45689999999999999999999999999876654
No 495
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.23 E-value=0.79 Score=40.81 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
.+..|+|||.|-.|..+|..|++.|. +++|+|.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~ 53 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDD 53 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Confidence 35799999999999999999999998 7999996
No 496
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.18 E-value=0.7 Score=46.84 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=31.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
.+.|.|||-|-+|++++..|++.|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4679999999999999999999999999999754
No 497
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.03 E-value=0.75 Score=43.83 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=29.7
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 010587 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (506)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (506)
+|.|||.|..|...|..|++.|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998753
No 498
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.00 E-value=0.79 Score=41.73 Aligned_cols=32 Identities=38% Similarity=0.522 Sum_probs=29.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
+.+|+|||.|-.|...|..|++.|. +++|+|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5799999999999999999999998 7889886
No 499
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.98 E-value=0.79 Score=46.90 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=30.9
Q ss_pred CCCceEeeccccCCcCcchhhHHHHHHHHHHHHHHHHHHH
Q 010587 440 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 479 (506)
Q Consensus 440 p~~~l~~aG~~~~~~~~g~~egA~~sG~~aA~~i~~~l~~ 479 (506)
..+|+|.+||.... +..+..|+..|..||..|.+.|..
T Consensus 429 s~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 429 SNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhc
Confidence 46799999999763 235667999999999999998864
No 500
>PRK08328 hypothetical protein; Provisional
Probab=87.95 E-value=0.79 Score=41.77 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=29.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEee
Q 010587 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLES 59 (506)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~ 59 (506)
+.+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5789999999999999999999998 6889885
Done!