Query 010588
Match_columns 506
No_of_seqs 197 out of 1385
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 4E-141 9E-146 1100.5 43.3 475 27-505 31-509 (524)
2 PLN02849 beta-glucosidase 100.0 5E-133 1E-137 1069.6 46.3 477 10-506 7-484 (503)
3 PLN02814 beta-glucosidase 100.0 6E-133 1E-137 1069.5 44.7 460 28-505 23-483 (504)
4 PLN02998 beta-glucosidase 100.0 2E-132 3E-137 1064.4 45.1 463 25-504 23-487 (497)
5 COG2723 BglB Beta-glucosidase/ 100.0 4E-129 8E-134 1005.1 39.5 445 31-505 2-453 (460)
6 PRK13511 6-phospho-beta-galact 100.0 8E-128 2E-132 1027.2 43.9 449 31-506 3-467 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 5E-127 1E-131 1019.3 45.5 445 32-505 3-464 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 9E-127 2E-131 1018.6 45.3 445 30-505 3-473 (478)
9 PF00232 Glyco_hydro_1: Glycos 100.0 3E-128 6E-133 1031.3 32.8 447 31-506 3-454 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 5E-126 1E-130 1012.9 45.8 444 32-505 3-472 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 2E-125 5E-130 1007.1 46.5 446 28-505 1-473 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 6E-125 1E-129 1001.8 45.4 443 32-505 3-469 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4E-122 9E-127 973.4 42.3 427 33-498 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 2.1E-13 4.6E-18 135.5 23.5 250 108-497 2-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.4 4E-13 8.6E-18 140.9 8.7 109 86-198 10-141 (374)
16 PF00150 Cellulase: Cellulase 99.1 2E-10 4.2E-15 114.6 9.6 109 87-198 22-134 (281)
17 PF07745 Glyco_hydro_53: Glyco 99.1 1.8E-08 3.9E-13 103.3 24.0 266 89-479 27-319 (332)
18 PF00331 Glyco_hydro_10: Glyco 99.1 2.4E-08 5.3E-13 102.6 21.8 302 33-500 6-318 (320)
19 PF01229 Glyco_hydro_39: Glyco 99.1 3.2E-09 7E-14 115.1 16.0 291 87-500 40-358 (486)
20 PRK10150 beta-D-glucuronidase; 99.0 5.4E-08 1.2E-12 108.4 24.5 264 86-503 313-593 (604)
21 COG1874 LacA Beta-galactosidas 99.0 6.2E-10 1.3E-14 122.5 8.3 121 86-210 30-177 (673)
22 COG3693 XynA Beta-1,4-xylanase 98.9 5.9E-07 1.3E-11 89.9 22.1 271 107-505 67-344 (345)
23 COG3867 Arabinogalactan endo-1 98.0 0.0014 3E-08 65.2 20.2 305 29-480 31-361 (403)
24 COG2730 BglC Endoglucanase [Ca 97.8 0.00011 2.4E-09 78.2 9.7 116 82-197 64-193 (407)
25 PF01301 Glyco_hydro_35: Glyco 97.6 0.00019 4.2E-09 73.8 9.2 109 87-196 25-151 (319)
26 PF01373 Glyco_hydro_14: Glyco 97.3 0.00037 8.1E-09 72.7 5.6 106 85-196 15-151 (402)
27 PLN02803 beta-amylase 97.2 0.0012 2.7E-08 70.6 8.4 106 86-196 107-251 (548)
28 PLN02161 beta-amylase 97.2 0.0012 2.5E-08 70.4 8.2 110 82-196 113-261 (531)
29 PLN00197 beta-amylase; Provisi 97.2 0.0013 2.8E-08 70.6 8.5 105 87-196 128-271 (573)
30 PLN02801 beta-amylase 97.0 0.0026 5.5E-08 67.9 9.2 98 86-186 37-173 (517)
31 PLN03059 beta-galactosidase; P 97.0 0.0041 8.8E-08 70.7 10.6 111 86-197 59-189 (840)
32 PLN02905 beta-amylase 96.9 0.0033 7.1E-08 68.3 8.9 100 83-185 283-421 (702)
33 PLN02705 beta-amylase 96.9 0.0035 7.6E-08 67.9 9.0 99 84-185 266-403 (681)
34 PF14587 Glyco_hydr_30_2: O-Gl 96.9 0.0049 1.1E-07 64.2 9.7 100 96-196 57-184 (384)
35 PF02836 Glyco_hydro_2_C: Glyc 96.2 0.018 3.8E-07 58.6 8.7 93 84-195 34-132 (298)
36 PF13204 DUF4038: Protein of u 96.1 0.026 5.6E-07 57.4 9.1 103 88-195 32-156 (289)
37 PF14488 DUF4434: Domain of un 95.0 0.13 2.7E-06 48.0 8.7 102 86-196 20-131 (166)
38 KOG0496 Beta-galactosidase [Ca 94.6 0.18 4E-06 55.6 9.7 109 87-196 50-176 (649)
39 PF11790 Glyco_hydro_cc: Glyco 94.6 0.13 2.7E-06 50.8 7.8 67 388-467 151-217 (239)
40 PRK09525 lacZ beta-D-galactosi 93.3 0.3 6.5E-06 58.1 9.0 91 84-196 369-464 (1027)
41 PRK10340 ebgA cryptic beta-D-g 92.2 0.45 9.8E-06 56.6 8.6 90 84-195 353-450 (1021)
42 COG3934 Endo-beta-mannanase [C 91.3 0.094 2E-06 55.7 1.4 109 88-197 28-150 (587)
43 COG3250 LacZ Beta-galactosidas 91.3 0.87 1.9E-05 52.5 9.3 90 82-196 317-408 (808)
44 COG3664 XynB Beta-xylosidase [ 85.3 1.6 3.5E-05 45.9 5.7 99 95-198 14-117 (428)
45 PF07488 Glyco_hydro_67M: Glyc 82.9 7.7 0.00017 39.5 9.1 87 85-184 56-150 (328)
46 PF02836 Glyco_hydro_2_C: Glyc 82.9 1.8 4E-05 43.8 5.0 102 387-503 183-294 (298)
47 PF14871 GHL6: Hypothetical gl 81.8 5.1 0.00011 35.8 6.8 89 90-182 4-123 (132)
48 PF02638 DUF187: Glycosyl hydr 78.9 8.2 0.00018 39.7 8.1 96 86-183 19-154 (311)
49 PF03198 Glyco_hydro_72: Gluca 74.2 13 0.00028 38.2 7.8 48 87-148 54-101 (314)
50 PF10566 Glyco_hydro_97: Glyco 73.9 12 0.00026 37.7 7.6 120 58-181 8-149 (273)
51 PRK05799 coproporphyrinogen II 73.5 22 0.00047 37.3 9.8 97 89-201 99-198 (374)
52 smart00642 Aamy Alpha-amylase 73.3 8.2 0.00018 35.8 5.8 63 84-146 17-90 (166)
53 PF12891 Glyco_hydro_44: Glyco 71.3 10 0.00022 37.4 6.2 74 125-198 23-138 (239)
54 PF00332 Glyco_hydro_17: Glyco 70.6 6.3 0.00014 40.5 4.8 82 390-483 212-302 (310)
55 COG5309 Exo-beta-1,3-glucanase 70.6 24 0.00053 35.3 8.5 53 78-146 55-107 (305)
56 PRK08599 coproporphyrinogen II 65.4 40 0.00087 35.3 9.8 103 89-206 100-204 (377)
57 TIGR00612 ispG_gcpE 1-hydroxy- 65.3 45 0.00097 34.6 9.5 87 78-178 74-160 (346)
58 PLN02361 alpha-amylase 60.5 16 0.00036 38.9 5.7 66 83-148 26-100 (401)
59 cd03174 DRE_TIM_metallolyase D 59.8 29 0.00064 34.0 7.2 79 89-179 77-156 (265)
60 TIGR03581 EF_0839 conserved hy 59.7 31 0.00067 33.5 6.7 74 85-170 134-229 (236)
61 TIGR00433 bioB biotin syntheta 59.7 23 0.00049 35.6 6.4 54 89-145 123-177 (296)
62 TIGR01210 conserved hypothetic 59.2 44 0.00095 34.3 8.5 108 89-210 117-229 (313)
63 cd06543 GH18_PF-ChiA-like PF-C 57.3 54 0.0012 33.4 8.6 88 93-187 19-109 (294)
64 TIGR00539 hemN_rel putative ox 57.1 60 0.0013 33.9 9.2 92 89-196 100-194 (360)
65 KOG2233 Alpha-N-acetylglucosam 56.4 48 0.001 36.0 8.1 111 85-195 77-248 (666)
66 cd06592 GH31_glucosidase_KIAA1 55.3 49 0.0011 33.7 8.0 106 88-196 32-167 (303)
67 cd06601 GH31_lyase_GLase GLase 54.6 40 0.00087 35.0 7.3 80 120-201 58-140 (332)
68 PF12876 Cellulase-like: Sugar 53.9 8.9 0.00019 31.4 1.9 19 178-196 1-22 (88)
69 PRK05628 coproporphyrinogen II 53.8 63 0.0014 33.8 8.8 103 89-206 108-212 (375)
70 PRK09058 coproporphyrinogen II 53.4 76 0.0017 34.3 9.5 105 89-209 163-270 (449)
71 cd07939 DRE_TIM_NifV Streptomy 53.0 45 0.00097 33.1 7.2 58 89-146 72-130 (259)
72 PRK14041 oxaloacetate decarbox 52.9 48 0.001 36.1 7.8 56 84-152 88-148 (467)
73 PLN00196 alpha-amylase; Provis 52.2 22 0.00047 38.3 5.0 66 84-149 42-117 (428)
74 PF00128 Alpha-amylase: Alpha 52.0 28 0.0006 34.4 5.6 57 89-147 7-73 (316)
75 COG0821 gcpE 1-hydroxy-2-methy 51.5 1.1E+02 0.0024 31.8 9.5 85 80-178 78-162 (361)
76 PRK07379 coproporphyrinogen II 50.6 93 0.002 33.0 9.5 105 89-209 115-222 (400)
77 TIGR02090 LEU1_arch isopropylm 49.6 58 0.0012 34.2 7.6 61 88-148 73-134 (363)
78 cd07945 DRE_TIM_CMS Leptospira 49.6 29 0.00063 35.1 5.2 82 88-180 76-158 (280)
79 PRK14040 oxaloacetate decarbox 49.4 57 0.0012 36.7 7.9 51 85-148 91-146 (593)
80 cd06591 GH31_xylosidase_XylS X 49.4 87 0.0019 32.1 8.8 110 88-198 26-163 (319)
81 PRK05904 coproporphyrinogen II 48.7 98 0.0021 32.3 9.2 95 89-198 103-199 (353)
82 cd06598 GH31_transferase_CtsZ 48.5 93 0.002 31.9 8.9 108 88-198 26-168 (317)
83 cd06593 GH31_xylosidase_YicI Y 47.9 84 0.0018 31.9 8.4 105 88-195 26-160 (308)
84 COG1523 PulA Type II secretory 47.5 35 0.00076 39.0 5.9 55 92-146 206-285 (697)
85 PRK06294 coproporphyrinogen II 46.7 1.2E+02 0.0027 31.7 9.6 96 89-200 103-201 (370)
86 PRK12313 glycogen branching en 46.6 91 0.002 35.3 9.1 99 85-191 169-308 (633)
87 PRK12858 tagatose 1,6-diphosph 45.6 1.1E+02 0.0025 31.8 9.0 54 92-148 112-165 (340)
88 PF02055 Glyco_hydro_30: O-Gly 45.4 1.2E+02 0.0026 33.4 9.4 97 393-501 319-419 (496)
89 TIGR02629 L_rham_iso_rhiz L-rh 45.2 3.3E+02 0.0072 29.2 12.3 136 89-273 73-218 (412)
90 PRK05402 glycogen branching en 45.1 1.1E+02 0.0025 35.2 9.7 98 86-191 265-403 (726)
91 cd06600 GH31_MGAM-like This fa 45.1 1.2E+02 0.0025 31.2 8.9 106 89-197 27-163 (317)
92 PRK00366 ispG 4-hydroxy-3-meth 44.9 1.1E+02 0.0025 31.9 8.6 73 95-178 97-169 (360)
93 cd07944 DRE_TIM_HOA_like 4-hyd 44.8 83 0.0018 31.5 7.6 65 89-180 85-149 (266)
94 cd06602 GH31_MGAM_SI_GAA This 44.7 85 0.0018 32.6 7.9 107 88-197 26-168 (339)
95 PRK05660 HemN family oxidoredu 44.5 1.1E+02 0.0024 32.2 8.8 95 89-198 107-203 (378)
96 cd07948 DRE_TIM_HCS Saccharomy 44.4 39 0.00085 33.8 5.2 60 89-148 74-134 (262)
97 PLN02784 alpha-amylase 44.3 42 0.00091 39.1 5.9 66 83-148 518-592 (894)
98 PLN02746 hydroxymethylglutaryl 44.1 79 0.0017 33.1 7.5 84 88-180 123-208 (347)
99 PRK12331 oxaloacetate decarbox 43.8 87 0.0019 34.0 8.0 52 88-152 98-149 (448)
100 PRK05692 hydroxymethylglutaryl 43.7 85 0.0018 31.8 7.6 86 87-181 80-167 (287)
101 cd02932 OYE_YqiM_FMN Old yello 43.6 3.8E+02 0.0083 27.5 15.2 145 110-278 61-242 (336)
102 PF03511 Fanconi_A: Fanconi an 43.5 18 0.00038 27.9 1.9 39 110-150 19-57 (64)
103 PRK09249 coproporphyrinogen II 43.3 99 0.0022 33.4 8.5 85 88-187 150-236 (453)
104 smart00729 Elp3 Elongator prot 43.0 1.5E+02 0.0033 26.9 8.8 56 87-145 98-156 (216)
105 PRK09441 cytoplasmic alpha-amy 42.8 47 0.001 36.2 5.9 67 83-149 19-106 (479)
106 TIGR02660 nifV_homocitr homoci 42.7 71 0.0015 33.5 7.1 80 89-183 75-155 (365)
107 TIGR02402 trehalose_TreZ malto 41.9 1.4E+02 0.003 33.2 9.5 92 85-183 110-237 (542)
108 cd06603 GH31_GANC_GANAB_alpha 41.7 87 0.0019 32.4 7.5 110 88-199 26-167 (339)
109 PRK12581 oxaloacetate decarbox 41.7 91 0.002 34.0 7.7 56 84-152 98-158 (468)
110 PRK11858 aksA trans-homoaconit 41.7 83 0.0018 33.2 7.4 58 89-146 78-136 (378)
111 PRK12399 tagatose 1,6-diphosph 41.5 1.2E+02 0.0027 31.3 8.2 90 92-190 111-203 (324)
112 cd02803 OYE_like_FMN_family Ol 41.4 1.9E+02 0.0042 29.4 9.9 136 111-270 62-221 (327)
113 PF03659 Glyco_hydro_71: Glyco 41.4 1.4E+02 0.003 31.8 9.0 90 86-201 17-106 (386)
114 PRK04161 tagatose 1,6-diphosph 40.8 1.3E+02 0.0028 31.2 8.2 91 91-190 112-205 (329)
115 PRK07094 biotin synthase; Prov 40.8 46 0.00099 34.0 5.2 56 87-145 127-184 (323)
116 cd02874 GH18_CFLE_spore_hydrol 40.2 1.2E+02 0.0027 30.7 8.2 92 84-183 7-103 (313)
117 TIGR03471 HpnJ hopanoid biosyn 39.4 54 0.0012 35.5 5.7 56 89-147 287-344 (472)
118 PRK08446 coproporphyrinogen II 38.9 1.6E+02 0.0035 30.5 9.0 92 89-196 98-192 (350)
119 PF05089 NAGLU: Alpha-N-acetyl 38.8 1E+02 0.0022 32.0 7.2 96 85-181 18-165 (333)
120 TIGR02403 trehalose_treC alpha 37.5 70 0.0015 35.5 6.3 58 83-146 24-95 (543)
121 cd07937 DRE_TIM_PC_TC_5S Pyruv 37.1 2E+02 0.0044 28.7 9.1 69 88-181 93-161 (275)
122 PRK10933 trehalose-6-phosphate 36.4 83 0.0018 35.0 6.7 62 83-146 30-101 (551)
123 PF00150 Cellulase: Cellulase 36.3 82 0.0018 30.7 6.1 56 128-186 23-78 (281)
124 PRK05474 xylose isomerase; Pro 36.1 1.6E+02 0.0035 31.6 8.3 69 91-166 84-157 (437)
125 PRK03705 glycogen debranching 36.0 71 0.0015 36.4 6.1 54 92-146 185-262 (658)
126 TIGR02456 treS_nterm trehalose 35.9 64 0.0014 35.7 5.7 55 86-146 28-96 (539)
127 TIGR01515 branching_enzym alph 35.8 2.2E+02 0.0048 32.1 10.0 99 85-191 155-294 (613)
128 cd07943 DRE_TIM_HOA 4-hydroxy- 35.7 3.6E+02 0.0078 26.6 10.6 46 89-147 88-133 (263)
129 PLN02389 biotin synthase 35.7 98 0.0021 32.8 6.8 57 87-146 176-233 (379)
130 PRK08208 coproporphyrinogen II 35.5 1.6E+02 0.0035 31.5 8.6 59 89-152 141-203 (430)
131 TIGR01108 oadA oxaloacetate de 35.3 1.4E+02 0.0029 33.7 8.1 93 88-197 93-205 (582)
132 PF07071 DUF1341: Protein of u 34.9 38 0.00083 32.5 3.1 54 85-143 134-206 (218)
133 TIGR00538 hemN oxygen-independ 34.3 1.5E+02 0.0033 32.0 8.1 76 89-180 151-229 (455)
134 cd07938 DRE_TIM_HMGL 3-hydroxy 33.7 1.5E+02 0.0032 29.9 7.4 83 89-180 76-160 (274)
135 cd06604 GH31_glucosidase_II_Ma 33.7 1.7E+02 0.0036 30.3 8.1 105 89-198 27-163 (339)
136 TIGR02635 RhaI_grampos L-rhamn 33.4 2.2E+02 0.0047 30.2 8.8 86 81-184 36-130 (378)
137 PRK09432 metF 5,10-methylenete 33.4 1E+02 0.0023 31.3 6.3 77 119-198 185-283 (296)
138 smart00812 Alpha_L_fucos Alpha 33.0 1.4E+02 0.0031 31.6 7.4 53 92-144 87-146 (384)
139 PRK14511 maltooligosyl trehalo 33.0 1.1E+02 0.0024 36.0 7.0 56 85-146 19-89 (879)
140 cd06545 GH18_3CO4_chitinase Th 32.7 1.1E+02 0.0024 30.1 6.2 74 105-183 26-99 (253)
141 cd07941 DRE_TIM_LeuA3 Desulfob 32.5 1.6E+02 0.0034 29.5 7.4 81 89-180 81-162 (273)
142 cd06525 GH25_Lyc-like Lyc mura 32.3 3.5E+02 0.0075 25.1 9.3 18 168-185 102-119 (184)
143 PRK06256 biotin synthase; Vali 32.2 69 0.0015 32.9 4.9 56 87-145 150-206 (336)
144 PRK14705 glycogen branching en 30.8 2.1E+02 0.0045 35.2 9.0 92 89-183 768-897 (1224)
145 PRK12677 xylose isomerase; Pro 30.6 3.9E+02 0.0084 28.3 10.2 71 88-165 33-104 (384)
146 TIGR03217 4OH_2_O_val_ald 4-hy 30.2 2.4E+02 0.0053 29.2 8.5 55 89-156 90-146 (333)
147 PRK09505 malS alpha-amylase; R 30.0 1.1E+02 0.0024 35.1 6.3 63 88-150 232-318 (683)
148 COG3589 Uncharacterized conser 30.0 1.8E+02 0.004 30.2 7.3 72 89-174 19-90 (360)
149 PRK13523 NADPH dehydrogenase N 29.9 6.4E+02 0.014 26.1 11.6 127 118-270 73-220 (337)
150 PRK08195 4-hyroxy-2-oxovalerat 29.9 1.8E+02 0.0039 30.2 7.5 67 89-183 91-157 (337)
151 PF04055 Radical_SAM: Radical 29.9 1.2E+02 0.0027 26.2 5.7 52 89-142 90-143 (166)
152 PTZ00445 p36-lilke protein; Pr 29.8 90 0.002 30.4 4.8 57 92-148 35-100 (219)
153 PRK10785 maltodextrin glucosid 29.6 1.1E+02 0.0024 34.4 6.3 53 88-146 181-246 (598)
154 cd06419 GH25_muramidase_2 Unch 29.2 1.8E+02 0.0039 27.5 6.8 81 85-187 45-131 (190)
155 PRK10340 ebgA cryptic beta-D-g 29.1 1.8E+02 0.0039 35.0 8.3 84 395-503 497-600 (1021)
156 cd06542 GH18_EndoS-like Endo-b 28.9 1.4E+02 0.0031 29.2 6.3 55 125-183 50-104 (255)
157 PRK12465 xylose isomerase; Pro 28.4 4.5E+02 0.0097 28.3 9.9 71 89-166 92-167 (445)
158 cd01335 Radical_SAM Radical SA 28.3 1.2E+02 0.0027 27.1 5.5 56 88-146 87-145 (204)
159 PRK01060 endonuclease IV; Prov 28.2 2.6E+02 0.0056 27.6 8.1 51 88-143 14-64 (281)
160 COG3534 AbfA Alpha-L-arabinofu 28.1 1.3E+02 0.0028 32.5 6.0 88 88-196 50-175 (501)
161 COG1501 Alpha-glucosidases, fa 28.1 1.7E+02 0.0037 34.0 7.6 100 99-201 295-422 (772)
162 PF02065 Melibiase: Melibiase; 28.1 3.4E+02 0.0075 28.9 9.3 92 87-183 59-183 (394)
163 TIGR01211 ELP3 histone acetylt 27.9 1.8E+02 0.004 32.2 7.5 106 89-211 206-317 (522)
164 PRK13347 coproporphyrinogen II 27.8 2.4E+02 0.0052 30.5 8.3 83 89-187 152-237 (453)
165 PF01055 Glyco_hydro_31: Glyco 27.8 1.9E+02 0.0041 30.9 7.5 109 87-198 44-184 (441)
166 PTZ00445 p36-lilke protein; Pr 27.6 82 0.0018 30.7 4.1 51 127-180 30-89 (219)
167 TIGR02159 PA_CoA_Oxy4 phenylac 27.4 76 0.0016 28.9 3.7 55 79-142 35-90 (146)
168 cd02933 OYE_like_FMN Old yello 27.3 7.1E+02 0.015 25.7 16.0 135 110-270 61-231 (338)
169 TIGR02630 xylose_isom_A xylose 27.3 1.9E+02 0.0042 31.0 7.1 69 91-166 83-156 (434)
170 PF11775 CobT_C: Cobalamin bio 27.2 1.7E+02 0.0036 28.6 6.2 67 384-458 116-184 (219)
171 cd07947 DRE_TIM_Re_CS Clostrid 27.1 2.4E+02 0.0051 28.5 7.6 59 88-146 76-135 (279)
172 cd00927 Cyt_c_Oxidase_VIc Cyto 26.6 30 0.00065 27.5 0.8 19 82-100 46-66 (70)
173 cd06565 GH20_GcnA-like Glycosy 26.4 1.9E+02 0.0041 29.4 6.9 62 87-155 18-86 (301)
174 TIGR00587 nfo apurinic endonuc 26.4 1.5E+02 0.0033 29.5 6.1 60 88-152 13-72 (274)
175 TIGR00419 tim triosephosphate 26.2 1.3E+02 0.0029 28.9 5.4 43 93-146 75-117 (205)
176 TIGR01212 radical SAM protein, 25.9 2.2E+02 0.0048 28.9 7.2 105 89-210 123-234 (302)
177 TIGR00676 fadh2 5,10-methylene 25.7 1.5E+02 0.0034 29.6 6.0 95 88-196 143-262 (272)
178 cd06562 GH20_HexA_HexB-like Be 25.6 1.2E+02 0.0026 31.6 5.3 71 79-155 9-96 (348)
179 TIGR02631 xylA_Arthro xylose i 25.4 6.7E+02 0.015 26.5 10.9 73 86-165 32-105 (382)
180 COG1649 Uncharacterized protei 25.4 1.4E+02 0.0029 32.2 5.6 98 86-183 64-199 (418)
181 PRK08207 coproporphyrinogen II 25.2 5.3E+02 0.012 28.3 10.4 92 89-197 269-364 (488)
182 cd04733 OYE_like_2_FMN Old yel 25.1 7.6E+02 0.017 25.3 11.3 41 109-149 62-105 (338)
183 PRK06582 coproporphyrinogen II 25.0 4.2E+02 0.0091 28.0 9.4 102 89-207 111-215 (390)
184 PRK14567 triosephosphate isome 24.8 1.6E+02 0.0034 29.5 5.7 48 93-147 79-126 (253)
185 PF04914 DltD_C: DltD C-termin 24.8 2E+02 0.0042 25.7 5.8 58 125-186 35-92 (130)
186 cd02742 GH20_hexosaminidase Be 24.5 2E+02 0.0044 29.2 6.7 63 87-155 17-98 (303)
187 PRK08508 biotin synthase; Prov 24.3 1.4E+02 0.0031 29.9 5.5 55 88-145 101-156 (279)
188 PRK14510 putative bifunctional 24.3 1.1E+02 0.0024 37.6 5.3 63 84-146 183-267 (1221)
189 PRK13210 putative L-xylulose 5 24.1 1.8E+02 0.0039 28.7 6.1 57 113-183 226-282 (284)
190 PF04551 GcpE: GcpE protein; 23.9 1.6E+02 0.0034 30.9 5.6 86 78-177 76-168 (359)
191 cd06568 GH20_SpHex_like A subg 23.8 2E+02 0.0044 29.7 6.6 72 79-156 9-102 (329)
192 TIGR02026 BchE magnesium-proto 23.7 1.5E+02 0.0033 32.4 5.9 60 89-152 287-348 (497)
193 TIGR02100 glgX_debranch glycog 23.6 1.5E+02 0.0032 34.1 5.9 56 92-147 190-266 (688)
194 PLN02447 1,4-alpha-glucan-bran 23.6 1.9E+02 0.0041 33.6 6.7 94 84-183 248-383 (758)
195 PRK11572 copper homeostasis pr 23.5 1.3E+02 0.0027 30.0 4.7 42 85-135 72-113 (248)
196 PLN02925 4-hydroxy-3-methylbut 23.3 2.3E+02 0.0049 32.5 7.1 54 126-180 210-263 (733)
197 PRK13398 3-deoxy-7-phosphohept 23.0 2.5E+02 0.0055 28.1 6.9 72 81-156 36-108 (266)
198 PF10566 Glyco_hydro_97: Glyco 22.9 2E+02 0.0044 29.0 6.1 58 88-156 108-165 (273)
199 PF01261 AP_endonuc_2: Xylose 22.9 63 0.0014 29.8 2.4 60 85-144 70-130 (213)
200 TIGR00423 radical SAM domain p 22.9 1.5E+02 0.0032 30.2 5.3 53 88-146 106-165 (309)
201 cd07940 DRE_TIM_IPMS 2-isoprop 22.8 2.7E+02 0.0059 27.6 7.1 78 89-180 72-154 (268)
202 TIGR03234 OH-pyruv-isom hydrox 22.6 1.9E+02 0.0041 28.1 5.9 65 85-152 83-150 (254)
203 PRK09282 pyruvate carboxylase 22.6 3E+02 0.0065 31.0 8.0 52 88-152 98-149 (592)
204 cd06599 GH31_glycosidase_Aec37 22.5 4.3E+02 0.0094 27.0 8.7 108 89-197 32-171 (317)
205 KOG1065 Maltase glucoamylase a 22.3 3.1E+02 0.0066 32.0 7.9 105 90-200 315-454 (805)
206 PRK12568 glycogen branching en 22.2 1.6E+02 0.0035 34.0 5.8 93 85-183 268-401 (730)
207 cd00311 TIM Triosephosphate is 22.1 1.9E+02 0.0041 28.6 5.7 48 93-147 78-125 (242)
208 PRK00042 tpiA triosephosphate 22.0 1.6E+02 0.0034 29.3 5.1 48 93-147 80-127 (250)
209 cd06563 GH20_chitobiase-like T 22.0 1.6E+02 0.0035 30.7 5.5 71 79-155 9-112 (357)
210 cd00019 AP2Ec AP endonuclease 21.8 3.4E+02 0.0074 26.7 7.7 54 86-144 10-64 (279)
211 PF03932 CutC: CutC family; I 21.8 1.4E+02 0.0031 28.6 4.6 50 85-148 71-120 (201)
212 COG2100 Predicted Fe-S oxidore 21.7 2.8E+02 0.006 28.9 6.7 81 83-179 198-284 (414)
213 COG3661 AguA Alpha-glucuronida 21.7 4.6E+02 0.01 28.4 8.5 92 86-184 183-279 (684)
214 cd06595 GH31_xylosidase_XylS-l 21.5 5.2E+02 0.011 26.0 8.9 108 89-198 28-163 (292)
215 PLN02923 xylose isomerase 21.0 7.1E+02 0.015 27.0 9.7 83 91-181 128-215 (478)
216 TIGR01232 lacD tagatose 1,6-di 20.9 4.5E+02 0.0097 27.3 8.1 60 91-153 111-170 (325)
217 TIGR02401 trehalose_TreY malto 20.8 1.9E+02 0.0041 33.9 6.1 59 86-150 16-91 (825)
218 PRK10426 alpha-glucosidase; Pr 20.8 5.2E+02 0.011 29.4 9.5 106 88-195 223-364 (635)
219 PF07555 NAGidase: beta-N-acet 20.7 2.7E+02 0.0058 28.6 6.6 92 89-191 18-110 (306)
220 PF13812 PPR_3: Pentatricopept 20.6 76 0.0016 20.0 1.8 15 128-142 20-34 (34)
221 COG3916 LasI N-acyl-L-homoseri 20.5 1.5E+02 0.0033 28.6 4.4 73 89-163 80-159 (209)
222 PF01071 GARS_A: Phosphoribosy 20.4 92 0.002 29.8 2.9 39 436-477 147-190 (194)
223 PRK10605 N-ethylmaleimide redu 20.3 9.9E+02 0.022 24.9 15.8 126 117-267 70-235 (362)
224 TIGR02584 cas_NE0113 CRISPR-as 20.3 5.9E+02 0.013 24.7 8.3 92 83-195 57-158 (209)
225 cd02930 DCR_FMN 2,4-dienoyl-Co 20.0 9.8E+02 0.021 24.7 13.8 134 111-268 62-215 (353)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-141 Score=1100.54 Aligned_cols=475 Identities=60% Similarity=1.084 Sum_probs=439.9
Q ss_pred ccccCCCCCCCeeeeecccccccCCcCCCCCCCcccceecc-ccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEe
Q 010588 27 QINRASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSH-TFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRF 105 (506)
Q Consensus 27 ~~~~~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~-~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~ 105 (506)
.+++..||++|+||+||||||+|||+++|||++|+||.|+| .|+++.+++++|+|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 35688999999999999999999999999999999999998 56688888899999999999999999999999999999
Q ss_pred cccccccccCCC--CCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 010588 106 SIAWSRIFPNGT--GQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 106 si~W~ri~P~g~--g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 183 (506)
|||||||+|.|. +.+|++|++||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|++||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999985 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEE
Q 010588 184 DRVKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIA 263 (506)
Q Consensus 184 ~~v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~ 263 (506)
|+||+|+|+|||++++..||..|..|||+|+.+. .+|..|++++++|+|+||||||||+||++||++++..|+|+|||+
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~-~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~ 269 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYV-GNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIA 269 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCccc-ccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEE
Confidence 9999999999999999999999999999999877 899999999999999999999999999999999988899999999
Q ss_pred ecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcCCccEEEEecCCcceee
Q 010588 264 FDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKGSLDFVGINHYTTFYAQ 343 (506)
Q Consensus 264 ~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikgs~DFlGiNyYt~~~v~ 343 (506)
++..|++|.+.+++|.+||+|+.+|.++|+++|++.|+||..|++.+++|||.||++|++++||+.||+|||||++.+|+
T Consensus 270 ~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~ 349 (524)
T KOG0626|consen 270 LSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVK 349 (524)
T ss_pred EeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhh
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999998
Q ss_pred cCCCccccccccCCccCCCCccccccCC-CCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCC
Q 010588 344 RNATNLIGVVLNDSLADAGALTIPFKNG-KPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTP 422 (506)
Q Consensus 344 ~~~~~~~~~~~~p~~~~d~~~~~~~~~g-~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~ 422 (506)
..+..+. ...++...|..+.. ..++ .+.+..+...|..++|+|||++|++++++|+||||||||||+++.+....+
T Consensus 350 ~~~~~~~--~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~ 426 (524)
T KOG0626|consen 350 HLKPPPD--PSQPGWSTDSGVDW-TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKS 426 (524)
T ss_pred ccCCCCC--CCCcccccccceee-eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccc
Confidence 7653110 01344555554443 2333 345566678899999999999999999999999999999999998654445
Q ss_pred CccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCCCCcccccchHHHHHHHH
Q 010588 423 TKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKDNQKRYPKNSVQWFKNFL 502 (506)
Q Consensus 423 ~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~~K~S~~~y~~ii 502 (506)
....++|..||+|++.||++|+|||.++||||+|||+|||||||||..||+.||||++|||+|+++|+||.|++||++++
T Consensus 427 ~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl 506 (524)
T KOG0626|consen 427 LEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFL 506 (524)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHH
Confidence 56778999999999999999999996699999999999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 010588 503 NST 505 (506)
Q Consensus 503 ~~~ 505 (506)
+.+
T Consensus 507 ~~~ 509 (524)
T KOG0626|consen 507 KGK 509 (524)
T ss_pred cCC
Confidence 854
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=5.1e-133 Score=1069.59 Aligned_cols=477 Identities=46% Similarity=0.885 Sum_probs=420.1
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCCeeeeecccccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccH
Q 010588 10 LVVSLLLVAFGIQTCSSQINRASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYP 89 (506)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~ 89 (506)
+...++|..|..--|+..+.+.+||++|+||+|||||||||++++||||+|+||.|.|.| ++.++++||||||||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~ 82 (503)
T PLN02849 7 LFTIFLLLALSSGKCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYK 82 (503)
T ss_pred HHHHHHHHhcccccccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHH
Confidence 333333434433335777888999999999999999999999999999999999999865 3457899999999999
Q ss_pred HHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHH
Q 010588 90 EDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIIN 169 (506)
Q Consensus 90 ~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~ 169 (506)
|||+|||+||+|+|||||+||||+|+|.|.+|++|++||+++||+|+++||+|+|||+|||+|+||+++||||+|+++++
T Consensus 83 eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~ 162 (503)
T PLN02849 83 EDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIK 162 (503)
T ss_pred HHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHH
Confidence 99999999999999999999999999878999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHhCCceeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 010588 170 DFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYR 249 (506)
Q Consensus 170 ~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r 249 (506)
+|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+.... ..|+.+++.++.++++||+++|||+||++||
T Consensus 163 ~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~ 241 (503)
T PLN02849 163 DFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPG-RNCSSGNSSTEPYIVGHNLLLAHASVSRLYK 241 (503)
T ss_pred HHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCcccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999743210 1355555567789999999999999999999
Q ss_pred HhhccCCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcCCc
Q 010588 250 KKYKAKQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKGSL 329 (506)
Q Consensus 250 ~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikgs~ 329 (506)
+.++..|+++||++++..+++|.+++|+|++||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++
T Consensus 242 ~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~ 321 (503)
T PLN02849 242 QKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSS 321 (503)
T ss_pred HHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCC
Confidence 97544578999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cEEEEecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEe
Q 010588 330 DFVGINHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIIT 409 (506)
Q Consensus 330 DFlGiNyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~IT 409 (506)
||||||||++.+|+.....+. ....+.+.. ..+.+....+++|| +|+|+||+++|+++++||++||||||
T Consensus 322 DFlGiNyYt~~~v~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~IT 391 (503)
T PLN02849 322 DFIGVIHYLAASVTNIKIKPS-LSGNPDFYS--------DMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYIL 391 (503)
T ss_pred CEEEEeccchhhcccCCCCCC-CCCCCcccc--------ccCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEe
Confidence 999999999999975321100 000011100 01122334567999 69999999999999999988899999
Q ss_pred ecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCC-CCc
Q 010588 410 ENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKD-NQK 488 (506)
Q Consensus 410 ENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~ 488 (506)
|||++..++ .++.++|++||+||++||++|++|| +|||||+||++|||||||||.+||++|||||+||++| +++
T Consensus 392 ENG~~~~d~----~~~~v~D~~Ri~Yl~~hL~~l~~Ai-~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~ 466 (503)
T PLN02849 392 ENGTPMKQD----LQLQQKDTPRIEYLHAYIGAVLKAV-RNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRK 466 (503)
T ss_pred CCCCCccCC----CCCcccCHHHHHHHHHHHHHHHHHH-HcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcc
Confidence 999998763 3568999999999999999999999 9999999999999999999999999999999999997 269
Q ss_pred ccccchHHHHHHHHhcCC
Q 010588 489 RYPKNSVQWFKNFLNSTK 506 (506)
Q Consensus 489 R~~K~S~~~y~~ii~~~~ 506 (506)
|+||+|++||+++|+++.
T Consensus 467 R~pK~S~~wy~~ii~~~~ 484 (503)
T PLN02849 467 RSPKLSAHWYSAFLKGNS 484 (503)
T ss_pred eecccHHHHHHHHHHhCC
Confidence 999999999999999763
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=5.7e-133 Score=1069.46 Aligned_cols=460 Identities=46% Similarity=0.878 Sum_probs=409.2
Q ss_pred cccCCCCCCCeeeeecccccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEecc
Q 010588 28 INRASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFSI 107 (506)
Q Consensus 28 ~~~~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~si 107 (506)
+.+.+||++|+||+|||||||||+++++|||+|+||.|++. .++.++++||||||||+|||+|||+||+|+|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 77788999999999999999999999999999999999873 23468899999999999999999999999999999
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCcee
Q 010588 108 AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDRVK 187 (506)
Q Consensus 108 ~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~ 187 (506)
+||||+|+|+|.+|++|++||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+|+
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCc
Q 010588 188 HWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVI 267 (506)
Q Consensus 188 ~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~ 267 (506)
+|+|||||++++..||..|.. ||.++......|.++++.++.++++||+++|||+||++||++++..|+++||++++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999884 8865421112465555567889999999999999999999987667899999999999
Q ss_pred eeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcCCccEEEEecCCcceeecCCC
Q 010588 268 WYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKGSLDFVGINHYTTFYAQRNAT 347 (506)
Q Consensus 268 ~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikgs~DFlGiNyYt~~~v~~~~~ 347 (506)
+++|++++|+|++||++++++.++||+||++.|+||+.|++++++++|.||++|+++|++++||||||||++.+|+..+.
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~ 337 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPA 337 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred ccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCCcccc
Q 010588 348 NLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPTKEAL 427 (506)
Q Consensus 348 ~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g~i 427 (506)
........+++..+.+.. ..+..+.+++|| +|+|+||+.+|+++++||+++||||||||++..+ +|.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~------~g~i 405 (504)
T PLN02814 338 PSIFPSMNEGFFTDMGAY-----IISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH------DSTL 405 (504)
T ss_pred CCcccccCCCcccccccc-----cCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC------CCcc
Confidence 100000000111111100 122345678999 5999999999999999998889999999999764 4679
Q ss_pred CchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCC-CCcccccchHHHHHHHHhcC
Q 010588 428 KDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKD-NQKRYPKNSVQWFKNFLNST 505 (506)
Q Consensus 428 ~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~R~~K~S~~~y~~ii~~~ 505 (506)
+|++||+||++||++|++|| +|||||+||++|||||||||.+||++|||||+||++| +++|+||+|++||+++|+++
T Consensus 406 ~D~~Ri~Yl~~hl~~l~~Ai-~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~ 483 (504)
T PLN02814 406 QDTPRVEFIQAYIGAVLNAI-KNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGT 483 (504)
T ss_pred cCHHHHHHHHHHHHHHHHHH-HcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcC
Confidence 99999999999999999999 8999999999999999999999999999999999997 36999999999999999865
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.6e-132 Score=1064.37 Aligned_cols=463 Identities=47% Similarity=0.904 Sum_probs=410.1
Q ss_pred ccccccCCCCCCCeeeeecccccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeE
Q 010588 25 SSQINRASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYR 104 (506)
Q Consensus 25 ~~~~~~~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R 104 (506)
++.+.+.+||++|+||+|||||||||++++||||+|+||.|.| ++. .+..++++||||||||+|||+|||+||+|+||
T Consensus 23 ~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YR 100 (497)
T PLN02998 23 SLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYR 100 (497)
T ss_pred cccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEE
Confidence 4457888999999999999999999999999999999999998 442 22247899999999999999999999999999
Q ss_pred ecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCC
Q 010588 105 FSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGD 184 (506)
Q Consensus 105 ~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~ 184 (506)
|||+||||+|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||
T Consensus 101 fSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgd 180 (497)
T PLN02998 101 FSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGD 180 (497)
T ss_pred eeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999878899999999999999999999999999999999999999899999999999999999999999999
Q ss_pred ceeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEe
Q 010588 185 RVKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAF 264 (506)
Q Consensus 185 ~v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~ 264 (506)
+|++|+|||||++++..||..|.+|||.+.......|..+++.++.++++||+++|||+||++||+.++..|+++||+++
T Consensus 181 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~ 260 (497)
T PLN02998 181 RVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISV 260 (497)
T ss_pred cCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 99999999999999999999999999964421112366666667889999999999999999999976556789999999
Q ss_pred cCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcCCccEEEEecCCcceeec
Q 010588 265 DVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKGSLDFVGINHYTTFYAQR 344 (506)
Q Consensus 265 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikgs~DFlGiNyYt~~~v~~ 344 (506)
+..+++|.+++|+|++||++++++.++||+||++.|+||+.|++.+++++|.||++|+++|++++||||||||++.+|+.
T Consensus 261 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~ 340 (497)
T PLN02998 261 YTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKD 340 (497)
T ss_pred eCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccccc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999975
Q ss_pred CCCccccccccCCccCCCCccccccCCCCCCCCC-CCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCC
Q 010588 345 NATNLIGVVLNDSLADAGALTIPFKNGKPIADRA-NSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPT 423 (506)
Q Consensus 345 ~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~-~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~ 423 (506)
.+....+ ..+.+..+..... .+.+..+ .++| +|+|+||+.+|+++++||++|||||||||+++.+
T Consensus 341 ~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~------ 406 (497)
T PLN02998 341 NSSSLKP--NLQDFNTDIAVEM-----TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH------ 406 (497)
T ss_pred CCCcCCC--Ccccccccccccc-----ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC------
Confidence 3211000 0011111111000 0111223 3788 6999999999999999999888999999998754
Q ss_pred ccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCC-CCcccccchHHHHHHHH
Q 010588 424 KEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKD-NQKRYPKNSVQWFKNFL 502 (506)
Q Consensus 424 ~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~R~~K~S~~~y~~ii 502 (506)
+|+++|++||+||++||++|++|| +|||||+|||+|||||||||.+||++|||||+||++| +++|+||+|++||+++|
T Consensus 407 ~g~v~D~~Ri~Yl~~hl~~~~kAi-~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii 485 (497)
T PLN02998 407 SSSLVDTTRVKYLSSYIKAVLHSL-RKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFL 485 (497)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHH-HcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHH
Confidence 367999999999999999999999 9999999999999999999999999999999999997 37999999999999999
Q ss_pred hc
Q 010588 503 NS 504 (506)
Q Consensus 503 ~~ 504 (506)
++
T Consensus 486 ~~ 487 (497)
T PLN02998 486 KG 487 (497)
T ss_pred hc
Confidence 86
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-129 Score=1005.06 Aligned_cols=445 Identities=39% Similarity=0.764 Sum_probs=404.7
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCCCcccceecc--ccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEeccc
Q 010588 31 ASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSH--TFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFSIA 108 (506)
Q Consensus 31 ~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~--~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~ 108 (506)
.+||++|+||+||||+|+|||+++||||+|+||.|.+ .|+++..+.++++||||||||+|||+|||+||+|+||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 57888888999999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCcee
Q 010588 109 WSRIFPNGTG-QINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDRVK 187 (506)
Q Consensus 109 W~ri~P~g~g-~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~ 187 (506)
||||+|+|++ .+|++|++||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999855 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCc
Q 010588 188 HWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVI 267 (506)
Q Consensus 188 ~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~ 267 (506)
+|+|||||++++..||+.|.+||+..+. +.++||+||+++|||+|++++|+.. ++.+||++++..
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~~------------~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~ 226 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVDP------------KAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLT 226 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccCH------------HHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccC
Confidence 9999999999999999999999997653 6889999999999999999999864 344999999999
Q ss_pred eeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhcc--CCCCChhHHHhhcC-CccEEEEecCCc-ceee
Q 010588 268 WYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSR--LPRFTSSEAALLKG-SLDFVGINHYTT-FYAQ 343 (506)
Q Consensus 268 ~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~--lp~ft~~d~~~ikg-s~DFlGiNyYt~-~~v~ 343 (506)
+.||.+++|+|+.||+.++.+.+.+|+||+++|.||..+.+.+.+. +|.++++|+++||. ++||||+|||++ ++++
T Consensus 227 p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~ 306 (460)
T COG2723 227 PAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKA 306 (460)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEee
Confidence 9999999999999999999999999999999999999999999764 79999999999984 699999999995 4444
Q ss_pred cCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCC
Q 010588 344 RNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPT 423 (506)
Q Consensus 344 ~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~ 423 (506)
..+... +++..+... ....+|..+.+++|| +|||+|||.+|+++++||+ +||||||||++..++.+ .
T Consensus 307 ~~~~~~------~~~~~~~~~---~~~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~--~ 373 (460)
T COG2723 307 AEPRYV------SGYGPGGFF---TSVPNPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEVD--F 373 (460)
T ss_pred ccCCcC------Ccccccccc---cccCCCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccccc--c
Confidence 432110 111111001 112256677889999 5999999999999999998 99999999999988632 2
Q ss_pred ccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCCCCcccccchHHHHHHHHh
Q 010588 424 KEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKDNQKRYPKNSVQWFKNFLN 503 (506)
Q Consensus 424 ~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~~K~S~~~y~~ii~ 503 (506)
++ |+|++||+||++||++|++|| +|||+|+|||+||++||+||.+||++||||++||++|+++|+||+|++|||++|+
T Consensus 374 ~~-i~DdyRI~Yl~~Hl~~v~~AI-~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 374 DG-INDDYRIDYLKEHLKAVKKAI-EDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred CC-cCchHHHHHHHHHHHHHHHHH-HcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHh
Confidence 33 999999999999999999999 9999999999999999999999999999999999998669999999999999999
Q ss_pred cC
Q 010588 504 ST 505 (506)
Q Consensus 504 ~~ 505 (506)
+|
T Consensus 452 sn 453 (460)
T COG2723 452 SN 453 (460)
T ss_pred cC
Confidence 77
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=8.2e-128 Score=1027.19 Aligned_cols=449 Identities=34% Similarity=0.641 Sum_probs=394.7
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEeccccc
Q 010588 31 ASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFSIAWS 110 (506)
Q Consensus 31 ~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ 110 (506)
.+||++|+||+|||||||||++++||||+|+||+|++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 369999999999999999999999999999999999876653 6899999999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCceeEEE
Q 010588 111 RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDRVKHWI 190 (506)
Q Consensus 111 ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~ 190 (506)
||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.|+++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998789999999999999999999999999999999999999986 9999999999999999999999999 99999
Q ss_pred eecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCceee
Q 010588 191 TFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVIWYE 270 (506)
Q Consensus 191 t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~ 270 (506)
|||||++++..||..|.+|||++.. .++.++++||+++|||+||++||+. .|+++||++++..+++
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~---~~~g~IGi~~~~~~~~ 222 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVAHARAVKLFKDK---GYKGEIGVVHALPTKY 222 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceEe
Confidence 9999999999999999999997431 1468999999999999999999985 3789999999999999
Q ss_pred eCC-CCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhc------cCCCCChhHHHhhcC---CccEEEEecCCcc
Q 010588 271 SAS-NSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGS------RLPRFTSSEAALLKG---SLDFVGINHYTTF 340 (506)
Q Consensus 271 P~~-~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~------~lp~ft~~d~~~ikg---s~DFlGiNyYt~~ 340 (506)
|.+ ++++|++||++++++.++||+||++.|+||+.|++.++. ..|.||++|++++++ ++||||||||++.
T Consensus 223 P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~ 302 (469)
T PRK13511 223 PIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSD 302 (469)
T ss_pred eCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcc
Confidence 999 899999999999999999999999999999999988741 124799999999974 5899999999999
Q ss_pred eeecCCCccccccccCCccC-----CCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCC-CcEEEeecCCC
Q 010588 341 YAQRNATNLIGVVLNDSLAD-----AGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRN-PTVIITENGMD 414 (506)
Q Consensus 341 ~v~~~~~~~~~~~~~p~~~~-----d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~-~pI~ITENG~~ 414 (506)
+|+..+....+....++... ..++. .....+..+.+++|| +|+|+||+.+|++++++|++ +||||||||++
T Consensus 303 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~ 379 (469)
T PRK13511 303 WMRAYDGETEIIHNGTGEKGSSKYQLKGVG--ERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLG 379 (469)
T ss_pred eeecCCCccccccCCCCccccccccccCcc--ccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcC
Confidence 99753210000000000000 00000 000122334577999 59999999999999999987 68999999999
Q ss_pred CCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCCCCcccccch
Q 010588 415 DPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKDNQKRYPKNS 494 (506)
Q Consensus 415 ~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~~K~S 494 (506)
..++ .+.++.++|++||+||++||++|++|| +|||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|
T Consensus 380 ~~d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai-~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~-~~R~pK~S 455 (469)
T PRK13511 380 YKDE--FVDGKTVDDDKRIDYVKQHLEVISDAI-SDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFET-QERYPKKS 455 (469)
T ss_pred CCCC--cCCCCccCCHHHHHHHHHHHHHHHHHH-HcCCCEEEEeecccccccchhcCccCccceEEECCCc-CccccccH
Confidence 8764 234578999999999999999999999 9999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCC
Q 010588 495 VQWFKNFLNSTK 506 (506)
Q Consensus 495 ~~~y~~ii~~~~ 506 (506)
++||+++|++++
T Consensus 456 ~~wy~~~i~~~~ 467 (469)
T PRK13511 456 AYWYKKLAETKV 467 (469)
T ss_pred HHHHHHHHHhCC
Confidence 999999999874
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=4.5e-127 Score=1019.34 Aligned_cols=445 Identities=34% Similarity=0.627 Sum_probs=392.7
Q ss_pred CCCCCCeeeeecccccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEecccccc
Q 010588 32 SFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFSIAWSR 111 (506)
Q Consensus 32 ~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~r 111 (506)
+||++|+||+|||||||||+++++|||+|+||.+.+.++. .++++||||||||+|||+|||+||+|+|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 6999999999999999999999999999999999876554 367899999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCceeEEEe
Q 010588 112 IFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDRVKHWIT 191 (506)
Q Consensus 112 i~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 191 (506)
|+|+|.|.+|++|++||+++|++|+++||+|||||+|||+|+||+++ |||+|++++++|++||+.|+++||+ |++|+|
T Consensus 79 I~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 79 IFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 99998789999999999999999999999999999999999999986 9999999999999999999999998 999999
Q ss_pred ecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCceeee
Q 010588 192 FNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVIWYES 271 (506)
Q Consensus 192 ~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~P 271 (506)
||||++++..||+.|.+|||.+.. .++.++++||+++|||+||++||++ .|+++||++++..+++|
T Consensus 157 ~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~a~hn~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~P 222 (467)
T TIGR01233 157 FNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYP 222 (467)
T ss_pred ecchhhhhhccchhcccCCCccch-----------hHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceeEE
Confidence 999999999999999999996321 1468999999999999999999986 37899999999999999
Q ss_pred CC-CCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhcc------CCCCChhHHHhh---cCCccEEEEecCCcce
Q 010588 272 AS-NSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSR------LPRFTSSEAALL---KGSLDFVGINHYTTFY 341 (506)
Q Consensus 272 ~~-~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~------lp~ft~~d~~~i---kgs~DFlGiNyYt~~~ 341 (506)
.+ ++|+|++||++++++.++||+||++.|+||+.|++.++.+ +|.||++|+++| ++++||||||||++.+
T Consensus 223 ~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~ 302 (467)
T TIGR01233 223 YDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDW 302 (467)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEcccccee
Confidence 98 8999999999999999999999999999999999988632 378999999999 5899999999999999
Q ss_pred eecCCCc-cccccccC--C--ccCCCCccccccCCCC-CCCCCCCCCcccChHHHHHHHHHHHhhcCC-CcEEEeecCCC
Q 010588 342 AQRNATN-LIGVVLND--S--LADAGALTIPFKNGKP-IADRANSIWLYIVPRGMRSLMNYIKQKYRN-PTVIITENGMD 414 (506)
Q Consensus 342 v~~~~~~-~~~~~~~p--~--~~~d~~~~~~~~~g~p-~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~-~pI~ITENG~~ 414 (506)
|+..+.. ........ . .....+.. ....+ ..+.+++|| +|+|+||+++|++++++|++ |||||||||++
T Consensus 303 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~ 378 (467)
T TIGR01233 303 MQAFDGETEIIHNGKGEKGSSKYQIKGVG---RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLG 378 (467)
T ss_pred eccCCCccccccCCccccCcccccCCCcc---cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCC
Confidence 9753110 00000000 0 00000000 00011 224577999 59999999999999999986 67999999999
Q ss_pred CCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCCCCcccccch
Q 010588 415 DPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKDNQKRYPKNS 494 (506)
Q Consensus 415 ~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~~K~S 494 (506)
..++. .+|.++|++||+||++||++|++|| +|||||+||++|||||||||.+||++|||||+||++| ++|+||+|
T Consensus 379 ~~d~~---~~g~i~D~~Ri~Yl~~hl~~~~~Ai-~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t-~~R~~K~S 453 (467)
T TIGR01233 379 YKDEF---VDNTVYDDGRIDYVKQHLEVLSDAI-ADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDT-QERYPKKS 453 (467)
T ss_pred CCCCC---CCCccCCHHHHHHHHHHHHHHHHHH-HcCCCEEEEeeccchhhhchhccccCccceEEECCCC-CccccccH
Confidence 87642 2578999999999999999999999 9999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhcC
Q 010588 495 VQWFKNFLNST 505 (506)
Q Consensus 495 ~~~y~~ii~~~ 505 (506)
++||+++|++|
T Consensus 454 ~~wy~~ii~~~ 464 (467)
T TIGR01233 454 AHWYKKLAETQ 464 (467)
T ss_pred HHHHHHHHHhc
Confidence 99999999986
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=9.4e-127 Score=1018.65 Aligned_cols=445 Identities=30% Similarity=0.535 Sum_probs=392.6
Q ss_pred cCCCCCCCeeeeecccccccCCcCCCCCCCcccceecccccccc--C----------C--CCCCcCCccccccHHHHHHH
Q 010588 30 RASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKIL--D----------N--SNADVAVDQYHRYPEDVQLM 95 (506)
Q Consensus 30 ~~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~y~~~~~Di~lm 95 (506)
..+||++|+||+|||||||||++++||||+|+||+|.|.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 35799999999999999999999999999999999998665541 1 1 25889999999999999999
Q ss_pred HHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHH
Q 010588 96 KDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATY 174 (506)
Q Consensus 96 k~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~y 174 (506)
|+||+|+|||||+||||+|+| .|.+|++|++||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 999999999999999999997 4579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeEEEeecCCceeeecccc-ccc-cCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 010588 175 AETCFQKFGDRVKHWITFNEPHTFTIQGYD-VGL-QAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKY 252 (506)
Q Consensus 175 a~~~~~~~~~~v~~w~t~NEp~~~~~~~y~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~ 252 (506)
|+.|+++|||+|++|+|||||++++..||. .|. +|||... ..+.++|+||+++|||+||++||+.
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~------------~~~~~~a~h~~llAHa~A~~~~~~~- 229 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK------------EQVKYQAAHHELVASAIATKIAHEV- 229 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch------------hhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999999888876 454 3676422 2468999999999999999999985
Q ss_pred ccCCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhc--cCCCCChhHHHhhc-CCc
Q 010588 253 KAKQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGS--RLPRFTSSEAALLK-GSL 329 (506)
Q Consensus 253 ~~~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~--~lp~ft~~d~~~ik-gs~ 329 (506)
.|+++||++++..+++|.+++++|++||++++ +.+.||+||++.|+||+.|++++++ .+|.||++|+++|+ +++
T Consensus 230 --~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~ 306 (478)
T PRK09593 230 --DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTV 306 (478)
T ss_pred --CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 47899999999999999999999999999887 5678999999999999999999975 46889999999996 999
Q ss_pred cEEEEecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEe
Q 010588 330 DFVGINHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIIT 409 (506)
Q Consensus 330 DFlGiNyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~IT 409 (506)
||||||||++.+|+..+... +..... .... .. +|..+.+++|| +|+|+||+++|+++++||+ .|||||
T Consensus 307 DFlGiNyYt~~~v~~~~~~~------~~~~~~-~~~~-~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi~It 374 (478)
T PRK09593 307 DFISFSYYSSRVASGDPKVN------EKTAGN-IFAS-LK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQ-KPMFIV 374 (478)
T ss_pred CEEEEecccCcccccCCCCC------CCCCCC-cccc-cc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcC-CCEEEE
Confidence 99999999999997532100 000000 0000 11 24556778999 5999999999999999997 489999
Q ss_pred ecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHh-CCCceEEEEeccCcchhcccCC-CCCcceeEEEeCCC--
Q 010588 410 ENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKE-DGCNVKGYFVWSLLDNWEWAAG-YTSRFGLYFVDYKD-- 485 (506)
Q Consensus 410 ENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~-dGv~v~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~-- 485 (506)
|||++..++ .+.+|.++|++||+||++||++|++|| + |||||+|||+|||+|||||.+| |++|||||+||++|
T Consensus 375 ENG~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai-~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~ 451 (478)
T PRK09593 375 ENGLGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAI-NEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEG 451 (478)
T ss_pred cCCCCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCC
Confidence 999998764 246788999999999999999999999 6 9999999999999999999999 99999999999996
Q ss_pred --CCcccccchHHHHHHHHhcC
Q 010588 486 --NQKRYPKNSVQWFKNFLNST 505 (506)
Q Consensus 486 --~~~R~~K~S~~~y~~ii~~~ 505 (506)
+++|+||+|++||+++|+++
T Consensus 452 ~~~~~R~pK~S~~wy~~ii~~~ 473 (478)
T PRK09593 452 KGTLKRSKKKSFDWYKKVIASN 473 (478)
T ss_pred CcccceecccHHHHHHHHHHhC
Confidence 27999999999999999875
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=2.6e-128 Score=1031.34 Aligned_cols=447 Identities=50% Similarity=0.936 Sum_probs=390.4
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEeccccc
Q 010588 31 ASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFSIAWS 110 (506)
Q Consensus 31 ~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ 110 (506)
.+||++|+||+|||||||||++++||||+|+||.|++.|+++.+++++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 47999999999999999999999999999999999999898888999999999999999999999999999999999999
Q ss_pred ccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCceeEE
Q 010588 111 RIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDRVKHW 189 (506)
Q Consensus 111 ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w 189 (506)
||+|+| .|.+|++|+++|+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999998 89999999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred EeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCcee
Q 010588 190 ITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVIWY 269 (506)
Q Consensus 190 ~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~ 269 (506)
+|||||++++..||+.|.+|||..+. ++.++++||+++||++||++||+++ |+++||++++..++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~~------------~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~ 226 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDSL------------KAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPF 226 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSSTH------------HHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEE
T ss_pred Eeccccceeecccccccccccccccc------------chhhHHHhhHHHHHHHHHHHHhhcc---cceEEecccccccc
Confidence 99999999999999999999996553 6789999999999999999999976 79999999999999
Q ss_pred eeCCCCHHHH-HHHHHHHHhhccccccccccCCCchhHHHHhhcc--CCCCChhHHHhhcCCccEEEEecCCcceeecCC
Q 010588 270 ESASNSTEDA-EATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSR--LPRFTSSEAALLKGSLDFVGINHYTTFYAQRNA 346 (506)
Q Consensus 270 ~P~~~~~~D~-~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~--lp~ft~~d~~~ikgs~DFlGiNyYt~~~v~~~~ 346 (506)
+|.+++++|. +||++.+++.++||+||+++|+||..|+++++++ +|.||++|++.|++++||||||||++.+|+..+
T Consensus 227 ~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~ 306 (455)
T PF00232_consen 227 YPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADP 306 (455)
T ss_dssp EESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESS
T ss_pred CCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCc
Confidence 9999988776 8999999999999999999999999999999987 999999999999999999999999999999875
Q ss_pred CccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCCccc
Q 010588 347 TNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPTKEA 426 (506)
Q Consensus 347 ~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g~ 426 (506)
.... .+...... .... ..++.++.++++|+ ++|+||+++|++++++|+++||+|||||+++.++.+ ++.
T Consensus 307 ~~~~----~~~~~~~~--~~~~-~~~~~~~~t~~gw~-i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~---~~~ 375 (455)
T PF00232_consen 307 NPSS----PPSYDSDA--PFGQ-PYNPGGPTTDWGWE-IYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVD---DGK 375 (455)
T ss_dssp SSTS----STTHEEEE--SEEE-ECETSSEBCTTSTB-BETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCT---TSH
T ss_pred cccc----cccccCCc--cccc-cccccccccccCcc-cccchHhhhhhhhccccCCCcEEEeccccccccccc---ccC
Confidence 3111 11111000 0000 01244567899994 999999999999999999999999999999887532 389
Q ss_pred cCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEe-CCCCCcccccchHHHHHHHHhcC
Q 010588 427 LKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVD-YKDNQKRYPKNSVQWFKNFLNST 505 (506)
Q Consensus 427 i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD-~~~~~~R~~K~S~~~y~~ii~~~ 505 (506)
++|++||+||++||++|++|| +|||||+||++|||||||||.+||++|||||+|| ++| ++|+||+|++||+++|++|
T Consensus 376 v~D~~Ri~yl~~hl~~v~~Ai-~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~-~~R~pK~S~~~y~~~i~~n 453 (455)
T PF00232_consen 376 VDDDYRIDYLQDHLNQVLKAI-EDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDT-LKRTPKKSAYWYKDFIRSN 453 (455)
T ss_dssp BSHHHHHHHHHHHHHHHHHHH-HTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTT-TEEEEBHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHhhh-ccCCCeeeEeeeccccccccccCccCccCceEEcCCCC-cCeeeccHHHHHHHHHHhc
Confidence 999999999999999999999 9999999999999999999999999999999999 555 9999999999999999987
Q ss_pred C
Q 010588 506 K 506 (506)
Q Consensus 506 ~ 506 (506)
.
T Consensus 454 g 454 (455)
T PF00232_consen 454 G 454 (455)
T ss_dssp E
T ss_pred C
Confidence 3
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.5e-126 Score=1012.91 Aligned_cols=444 Identities=30% Similarity=0.552 Sum_probs=387.4
Q ss_pred CCCCCCeeeeecccccccCCcCCCCCCCcccceec---c-cccccc----CCC--CCCcCCccccccHHHHHHHHHcCCC
Q 010588 32 SFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFS---H-TFGKIL----DNS--NADVAVDQYHRYPEDVQLMKDMGMD 101 (506)
Q Consensus 32 ~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~y~~~~~Di~lmk~lG~~ 101 (506)
+||++|+||+|||||||||++++||||+|+||.|+ + .|+++. ++. ++++||||||||+|||+|||+||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 4 355442 222 5789999999999999999999999
Q ss_pred eeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHH
Q 010588 102 AYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQ 180 (506)
Q Consensus 102 ~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~ 180 (506)
+|||||+||||+|+| .|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 999999999999997 4569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeEEEeecCCceeeec-----ccc-ccc-cCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 010588 181 KFGDRVKHWITFNEPHTFTIQ-----GYD-VGL-QAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYK 253 (506)
Q Consensus 181 ~~~~~v~~w~t~NEp~~~~~~-----~y~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~ 253 (506)
+|||+|++|+|||||++++.. ||. .|. +|||... ....++++||+++|||+|++++|+..
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~------------~~~~~~~~h~~llAha~A~~~~~~~~- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR------------EQIMYQAAHYELVASALAVKTGHEIN- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch------------hHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999999998766 443 343 3565321 14579999999999999999999864
Q ss_pred cCCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhcc--CCCCChhHHHhh-cCCcc
Q 010588 254 AKQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSR--LPRFTSSEAALL-KGSLD 330 (506)
Q Consensus 254 ~~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~--lp~ft~~d~~~i-kgs~D 330 (506)
|+++||++++..+++|.+++|+|++||++++.+ +.||+||++.|+||+.|+++++++ .|.||++|+++| ++++|
T Consensus 230 --~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~D 306 (476)
T PRK09589 230 --PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVD 306 (476)
T ss_pred --CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 688999999999999999999999999998854 679999999999999999999763 478999999999 58999
Q ss_pred EEEEecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEee
Q 010588 331 FVGINHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITE 410 (506)
Q Consensus 331 FlGiNyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITE 410 (506)
|||||||++.+|+..+..+. .....+ ... .. +|..+.+++|| +|+|+||+.+|++++++|+ .||||||
T Consensus 307 FlGiNyYts~~v~~~~~~~~-----~~~~~~--~~~-~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~-~Pi~ItE 374 (476)
T PRK09589 307 YIGFSYYMSFATKFHEDNPQ-----LDYVET--RDL-VS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQ-LPLFIVE 374 (476)
T ss_pred EEEEecccCcccccCCCCCC-----CCcccc--ccc-cc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcC-CCEEEEe
Confidence 99999999999975321000 000000 000 11 24456678999 5999999999999999997 5799999
Q ss_pred cCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCC-CCCcceeEEEeCCC----
Q 010588 411 NGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAG-YTSRFGLYFVDYKD---- 485 (506)
Q Consensus 411 NG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~---- 485 (506)
||++..++ .+.+|.++|++||+||++||++|++||++|||||+|||+|||||||||.+| |++|||||+||++|
T Consensus 375 NG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~ 452 (476)
T PRK09589 375 NGFGAIDQ--READGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKG 452 (476)
T ss_pred CCcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCc
Confidence 99998765 345788999999999999999999999669999999999999999999999 99999999999996
Q ss_pred CCcccccchHHHHHHHHhcC
Q 010588 486 NQKRYPKNSVQWFKNFLNST 505 (506)
Q Consensus 486 ~~~R~~K~S~~~y~~ii~~~ 505 (506)
+++|+||+|++||+++|+++
T Consensus 453 t~~R~pK~S~~wy~~~i~~n 472 (476)
T PRK09589 453 TLERSRKKSFYWYRDVIANN 472 (476)
T ss_pred ccccccccHHHHHHHHHHhc
Confidence 26999999999999999876
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.1e-125 Score=1007.09 Aligned_cols=446 Identities=28% Similarity=0.540 Sum_probs=389.6
Q ss_pred cccCCCCCCCeeeeecccccccCCcCCCCCCCcccceec---c-cccccc----CC--CCCCcCCccccccHHHHHHHHH
Q 010588 28 INRASFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFS---H-TFGKIL----DN--SNADVAVDQYHRYPEDVQLMKD 97 (506)
Q Consensus 28 ~~~~~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~---~-~~~~~~----~~--~~~~~a~d~y~~~~~Di~lmk~ 97 (506)
|++.+||++|+||+|||||||||++++||||+|+||.|+ + .|+++. ++ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 345679999999999999999999999999999999998 4 355441 22 2678999999999999999999
Q ss_pred cCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHH
Q 010588 98 MGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAE 176 (506)
Q Consensus 98 lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~ 176 (506)
||+|+|||||+||||+|+| +|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 9999999999999999997 466999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeEEEeecCCcee-----eeccccc-ccc-CCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 010588 177 TCFQKFGDRVKHWITFNEPHTF-----TIQGYDV-GLQ-APGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYR 249 (506)
Q Consensus 177 ~~~~~~~~~v~~w~t~NEp~~~-----~~~~y~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r 249 (506)
.||++|||+|++|+|||||+++ +..||.. |.+ ||+... ..+.++++||+++|||+||+++|
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~------------~~~~~~~~h~~llAHa~A~~~~~ 228 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP------------EETMYQVLHHQFVASALAVKAAR 228 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6778874 665 454321 24589999999999999999999
Q ss_pred HhhccCCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccC--CCCChhHHHhh-c
Q 010588 250 KKYKAKQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRL--PRFTSSEAALL-K 326 (506)
Q Consensus 250 ~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~l--p~ft~~d~~~i-k 326 (506)
+.. |+++||++++..+++|.+++|+|++||++++. ...||+||++.|+||+.|++.+++++ |.+|++|+++| +
T Consensus 229 ~~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~ 304 (477)
T PRK15014 229 RIN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLRE 304 (477)
T ss_pred HhC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhc
Confidence 864 68999999999999999999999999998773 22359999999999999999998754 78999999999 5
Q ss_pred CCccEEEEecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcE
Q 010588 327 GSLDFVGINHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTV 406 (506)
Q Consensus 327 gs~DFlGiNyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI 406 (506)
+++||||||||++.+|+..+..... .+.+. .. .+ +|..+.+++|| +|+|+||+.+|+++++||+ .||
T Consensus 305 ~~~DFlGiNyYt~~~v~~~~~~~~~---~~~~~-----~~-~~--~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi 371 (477)
T PRK15014 305 GTCDYLGFSYYMTNAVKAEGGTGDA---ISGFE-----GS-VP--NPYVKASDWGW-QIDPVGLRYALCELYERYQ-KPL 371 (477)
T ss_pred CCCCEEEEcceeCeeeccCCCCCCC---ccccc-----cc-cC--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcC-CCE
Confidence 8999999999999999753210000 00000 00 11 24445678999 5999999999999999997 579
Q ss_pred EEeecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHh-CCCceEEEEeccCcchhcccCC-CCCcceeEEEeCC
Q 010588 407 IITENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKE-DGCNVKGYFVWSLLDNWEWAAG-YTSRFGLYFVDYK 484 (506)
Q Consensus 407 ~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~-dGv~v~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~ 484 (506)
||||||++..++ .+.+|+++|++||+||++||++|++|| + |||||+|||+|||||||||.+| |++|||||+||++
T Consensus 372 ~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai-~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~ 448 (477)
T PRK15014 372 FIVENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAV-TYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKH 448 (477)
T ss_pred EEeCCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEeeccchhhhcccCCCccCccceEEECCC
Confidence 999999998764 346788999999999999999999999 7 9999999999999999999999 9999999999999
Q ss_pred C----CCcccccchHHHHHHHHhcC
Q 010588 485 D----NQKRYPKNSVQWFKNFLNST 505 (506)
Q Consensus 485 ~----~~~R~~K~S~~~y~~ii~~~ 505 (506)
| +++|+||+|++||+++|++|
T Consensus 449 ~~~~~~~~R~pK~S~~wy~~ii~~n 473 (477)
T PRK15014 449 DDGTGDMSRSRKKSFNWYKEVIASN 473 (477)
T ss_pred CCCCcccceecccHHHHHHHHHHhc
Confidence 7 26999999999999999876
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=6.2e-125 Score=1001.80 Aligned_cols=443 Identities=31% Similarity=0.547 Sum_probs=393.9
Q ss_pred CCCCCCeeeeecccccccCCcCCCCCCCcccceecccccccc------------CCC--CCCcCCccccccHHHHHHHHH
Q 010588 32 SFPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKIL------------DNS--NADVAVDQYHRYPEDVQLMKD 97 (506)
Q Consensus 32 ~fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~------------~~~--~~~~a~d~y~~~~~Di~lmk~ 97 (506)
+||++|+||+|||||||||++++||||+|+||.+++.|+++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999998666542 222 678999999999999999999
Q ss_pred cCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHH
Q 010588 98 MGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAE 176 (506)
Q Consensus 98 lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~ 176 (506)
||+|+|||||+|+||+|+| .+.+|++|+++|+++|++|+++||+|||||+||++|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999997 456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeEEEeecCCceeeecccc-ccc-cCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010588 177 TCFQKFGDRVKHWITFNEPHTFTIQGYD-VGL-QAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKA 254 (506)
Q Consensus 177 ~~~~~~~~~v~~w~t~NEp~~~~~~~y~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~ 254 (506)
.|+++|||+|++|+|||||++++..||. .|. +|||... ....++++||+++|||+||+++|+..
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~------------~~~~~~~~hn~llAHa~A~~~~~~~~-- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ------------DQVKYQAAHHELVASALATKIAHEVN-- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc------------hHhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 9999999999999999999999999996 664 5887532 14579999999999999999999864
Q ss_pred CCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhcc--CCCCChhHHHhhcCCccEE
Q 010588 255 KQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSR--LPRFTSSEAALLKGSLDFV 332 (506)
Q Consensus 255 ~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~--lp~ft~~d~~~ikgs~DFl 332 (506)
|+++||++++..+++|.+++++|++||++++ +.+.||+||+++|+||+.|++.++++ +|.||++|+++|++++|||
T Consensus 229 -~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFl 306 (474)
T PRK09852 229 -PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFV 306 (474)
T ss_pred -CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEE
Confidence 6899999999999999999999999998876 56889999999999999999999763 7999999999999999999
Q ss_pred EEecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecC
Q 010588 333 GINHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENG 412 (506)
Q Consensus 333 GiNyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG 412 (506)
|||||++.+|+...... .+. ....... .. +|..+.+++|| +|+|+||+.+|+++++||+ .||||||||
T Consensus 307 GiNyYt~~~v~~~~~~~-----~~~--~~~~~~~-~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG 374 (474)
T PRK09852 307 SFSYYASRCASAEMNAN-----NSS--AANVVKS-LR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQ-KPLFLVENG 374 (474)
T ss_pred EEccccCeecccCCCCC-----CCC--cCCceec-cc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcC-CCEEEeCCC
Confidence 99999999997532100 000 0000000 11 24556788999 5999999999999999997 579999999
Q ss_pred CCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCC-CCCcceeEEEeCCC----CC
Q 010588 413 MDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAG-YTSRFGLYFVDYKD----NQ 487 (506)
Q Consensus 413 ~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~~ 487 (506)
++..++ .+.+|.++|++||+||++||++|++|| +|||||+|||+|||||||||.+| |++|||||+||++| ++
T Consensus 375 ~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai-~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~ 451 (474)
T PRK09852 375 LGAKDE--IAANGEINDDYRISYLREHIRAMGEAI-ADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTL 451 (474)
T ss_pred CCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHH-HCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCccc
Confidence 998764 346788999999999999999999999 99999999999999999999999 99999999999996 27
Q ss_pred cccccchHHHHHHHHhcC
Q 010588 488 KRYPKNSVQWFKNFLNST 505 (506)
Q Consensus 488 ~R~~K~S~~~y~~ii~~~ 505 (506)
+|+||+|++||+++|++|
T Consensus 452 ~R~pK~S~~wy~~ii~~n 469 (474)
T PRK09852 452 TRTRKKSFWWYKKVIASN 469 (474)
T ss_pred ceecccHHHHHHHHHHhC
Confidence 999999999999999876
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4.2e-122 Score=973.44 Aligned_cols=427 Identities=46% Similarity=0.866 Sum_probs=393.4
Q ss_pred CCCCCeeeeecccccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEeccccccc
Q 010588 33 FPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFSIAWSRI 112 (506)
Q Consensus 33 fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri 112 (506)
||++|+||+||||||+||+++++|||+|+||.+.+.|+++.++.++++||||||+|+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998777776777899999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCceeEEEee
Q 010588 113 FPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDRVKHWITF 192 (506)
Q Consensus 113 ~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~ 192 (506)
+|+|+|.+|++++++|+++|++|+++||+|||||+||++|+||+++ |||+++++++.|++||+.|+++||++|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9997789999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCceeeeC
Q 010588 193 NEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVIWYESA 272 (506)
Q Consensus 193 NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~P~ 272 (506)
|||++++..||..|.+||+.++. ...++++||+++|||+|+++||++. |+++||++++..+++|.
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~------------~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 224 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL------------RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPA 224 (427)
T ss_pred cCcceecccchhhccCCCCCccH------------HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeC
Confidence 99999999999999999986432 3579999999999999999999864 68999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcCCccEEEEecCCcceeecCCCccccc
Q 010588 273 SNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKGSLDFVGINHYTTFYAQRNATNLIGV 352 (506)
Q Consensus 273 ~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikgs~DFlGiNyYt~~~v~~~~~~~~~~ 352 (506)
+++++|++||++++++.++||+||++.|+||..|++.++ .+|.||++|++++++++||||||||++.+|+.....
T Consensus 225 ~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~---- 299 (427)
T TIGR03356 225 SDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGT---- 299 (427)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCC----
Confidence 999999999999999999999999999999999999997 479999999999999999999999999999763210
Q ss_pred cccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCCccccCchhH
Q 010588 353 VLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPTKEALKDDKR 432 (506)
Q Consensus 353 ~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g~i~D~~R 432 (506)
.+... .. .+..+.+++|| +|+|+||+.+|+++++||++|||+|||||++..++. + +|+++|++|
T Consensus 300 --~~~~~--------~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~--~-~g~~~D~~R 363 (427)
T TIGR03356 300 --GAGFV--------EV--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEV--T-DGEVHDPER 363 (427)
T ss_pred --CCCcc--------cc--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCC--c-CCCcCCHHH
Confidence 01000 00 12234567999 699999999999999999878999999999987642 3 678999999
Q ss_pred HHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCCCCcccccchHHHH
Q 010588 433 IKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKDNQKRYPKNSVQWF 498 (506)
Q Consensus 433 i~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~~K~S~~~y 498 (506)
|+||++||++|++|| +|||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|++||
T Consensus 364 i~yl~~hl~~~~~Ai-~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~-~~R~~K~S~~wy 427 (427)
T TIGR03356 364 IAYLRDHLAALARAI-EEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYET-QKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEEecccccccchhcccccccceEEECCCC-CcccccceeeeC
Confidence 999999999999999 9999999999999999999999999999999999998 999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.60 E-value=2.1e-13 Score=135.55 Aligned_cols=250 Identities=16% Similarity=0.207 Sum_probs=158.1
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHHHHHcCCcc--EEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCc
Q 010588 108 AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEP--YVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDR 185 (506)
Q Consensus 108 ~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p--~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~ 185 (506)
.|+++||+ +|.+| ++..|++++.++++||++ ...+.|...|.|+... + .++..+.+.+|++.+++||+++
T Consensus 2 kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhCCc
Confidence 69999999 59999 777899999999999995 4456788899999742 2 4677899999999999999999
Q ss_pred eeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEec
Q 010588 186 VKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAFD 265 (506)
Q Consensus 186 v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~ 265 (506)
|..|.++|||..... +|.+. ...+.+.-.-. -..|.++.|+. .|+.++-+. .
T Consensus 74 i~~wdV~NE~~~~~~---------~~~~~-------------~~w~~~~G~~~--i~~af~~ar~~---~P~a~l~~N-d 125 (254)
T smart00633 74 IYAWDVVNEALHDNG---------SGLRR-------------SVWYQILGEDY--IEKAFRYAREA---DPDAKLFYN-D 125 (254)
T ss_pred ceEEEEeeecccCCC---------ccccc-------------chHHHhcChHH--HHHHHHHHHHh---CCCCEEEEe-c
Confidence 999999999974211 01110 00111110001 12455666664 356665432 1
Q ss_pred CceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcCCccEEEEecCCcceeecC
Q 010588 266 VIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKGSLDFVGINHYTTFYAQRN 345 (506)
Q Consensus 266 ~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikgs~DFlGiNyYt~~~v~~~ 345 (506)
.....+ +.. ......+ .+.+. .-...+|-||++.... ..
T Consensus 126 y~~~~~----~~k---~~~~~~~------------------v~~l~------------~~g~~iDgiGlQ~H~~----~~ 164 (254)
T smart00633 126 YNTEEP----NAK---RQAIYEL------------------VKKLK------------AKGVPIDGIGLQSHLS----LG 164 (254)
T ss_pred cCCcCc----cHH---HHHHHHH------------------HHHHH------------HCCCccceeeeeeeec----CC
Confidence 111111 000 0111111 11111 1123479999953210 00
Q ss_pred CCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCCcc
Q 010588 346 ATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPTKE 425 (506)
Q Consensus 346 ~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g 425 (506)
...|..|+..|+.+.+. ++||+|||.++.....
T Consensus 165 --------------------------------------~~~~~~~~~~l~~~~~~--g~pi~iTE~dv~~~~~------- 197 (254)
T smart00633 165 --------------------------------------SPNIAEIRAALDRFASL--GLEIQITELDISGYPN------- 197 (254)
T ss_pred --------------------------------------CCCHHHHHHHHHHHHHc--CCceEEEEeecCCCCc-------
Confidence 01245789999999765 5899999999987431
Q ss_pred ccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcceeEEEeCCCCCcccccchHHH
Q 010588 426 ALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKDNQKRYPKNSVQW 497 (506)
Q Consensus 426 ~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~~K~S~~~ 497 (506)
...+.+++++.+..+.+ .. .|.|.+.|.+.|..+|..+ .+.||+.=| -.||++.++
T Consensus 198 ---~~~qA~~~~~~l~~~~~----~p-~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~------~~~kpa~~~ 253 (254)
T smart00633 198 ---PQAQAADYEEVFKACLA----HP-AVTGVTVWGVTDKYSWLDG--GAPLLFDAN------YQPKPAYWA 253 (254)
T ss_pred ---HHHHHHHHHHHHHHHHc----CC-CeeEEEEeCCccCCcccCC--CCceeECCC------CCCChhhhc
Confidence 14566666666665543 22 7899999999999999875 567888433 347877654
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.41 E-value=4e-13 Score=140.88 Aligned_cols=109 Identities=25% Similarity=0.414 Sum_probs=87.2
Q ss_pred cccHHHHHHHHHcCCCeeEec-ccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhc-----
Q 010588 86 HRYPEDVQLMKDMGMDAYRFS-IAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKY----- 159 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~s-i~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~----- 159 (506)
+.|++|+++||++|+|++|+. ++|+++||+ +|+|| ++++|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 569999999999999999975 599999999 59999 89999999999999999999999999999998642
Q ss_pred ----------CC-----CCChhhHHHHHHHHHHHHHHhCCc--eeEEEeecCCcee
Q 010588 160 ----------KG-----WLDRQIINDFATYAETCFQKFGDR--VKHWITFNEPHTF 198 (506)
Q Consensus 160 ----------gg-----w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~~ 198 (506)
|+ ..+|...+.+.++++.++++|+++ |..|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 22 224667788888888889999885 7889999999743
No 16
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.12 E-value=2e-10 Score=114.59 Aligned_cols=109 Identities=20% Similarity=0.348 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHcCCCeeEecccccccc-cCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCC-
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIAWSRIF-PNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLD- 164 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~W~ri~-P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~- 164 (506)
..++|++.|+++|+|++|+.+.|..++ |.+++.++...++.++++|+.|.++||.+++++++. |.|.... ++...
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 569999999999999999999998888 565557999999999999999999999999999986 7774432 23333
Q ss_pred hhhHHHHHHHHHHHHHHhCC--ceeEEEeecCCcee
Q 010588 165 RQIINDFATYAETCFQKFGD--RVKHWITFNEPHTF 198 (506)
Q Consensus 165 ~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~~ 198 (506)
....+.|.++.+.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 55678899999999999944 57899999999843
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.12 E-value=1.8e-08 Score=103.26 Aligned_cols=266 Identities=19% Similarity=0.323 Sum_probs=147.6
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecC---CCCcHHHHhhcCCCCC-
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYH---WDLPQALDDKYKGWLD- 164 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h---~~~P~wl~~~~ggw~~- 164 (506)
++=+++||+.|+|++|+-+ | +.|...|.-| ++.-.++..+.+++|++.++++|- |.=|.--.. --+|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~-P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNK-PAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCC-CccCCCC
Confidence 4457999999999999987 4 4555237777 777899999999999999999984 334422211 257887
Q ss_pred --hhhHHHHHHHHHHHHHHhCC---ceeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHH
Q 010588 165 --RQIINDFATYAETCFQKFGD---RVKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALL 239 (506)
Q Consensus 165 --~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~ll 239 (506)
.+..+.-.+|.+.+.+.+++ .++++++=||.+.-.. ||-|... .+.-.-.++.
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~~---------------~~~~~a~ll~ 157 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKPS---------------NWDNLAKLLN 157 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCTT----------------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCcc---------------CHHHHHHHHH
Confidence 67778888999998888844 6899999999873211 3444321 2233334555
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCCh
Q 010588 240 THAKVADIYRKKYKAKQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTS 319 (506)
Q Consensus 240 AHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~ 319 (506)
|=.+| +|+. .|..+|.+.+... .|.... .||.|-+..
T Consensus 158 ag~~A---Vr~~---~p~~kV~lH~~~~---------~~~~~~--------~~~f~~l~~-------------------- 194 (332)
T PF07745_consen 158 AGIKA---VREV---DPNIKVMLHLANG---------GDNDLY--------RWFFDNLKA-------------------- 194 (332)
T ss_dssp HHHHH---HHTH---SSTSEEEEEES-T---------TSHHHH--------HHHHHHHHH--------------------
T ss_pred HHHHH---HHhc---CCCCcEEEEECCC---------CchHHH--------HHHHHHHHh--------------------
Confidence 44444 4544 3577886655531 121111 133332211
Q ss_pred hHHHhhcCCccEEEEecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHh
Q 010588 320 SEAALLKGSLDFVGINHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQ 399 (506)
Q Consensus 320 ~d~~~ikgs~DFlGiNyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~ 399 (506)
.....|+||++||.- |. -....|+..|+.+.+
T Consensus 195 -----~g~d~DviGlSyYP~------------------------------------------w~-~~l~~l~~~l~~l~~ 226 (332)
T PF07745_consen 195 -----AGVDFDVIGLSYYPF------------------------------------------WH-GTLEDLKNNLNDLAS 226 (332)
T ss_dssp -----TTGG-SEEEEEE-ST------------------------------------------TS-T-HHHHHHHHHHHHH
T ss_pred -----cCCCcceEEEecCCC------------------------------------------Cc-chHHHHHHHHHHHHH
Confidence 113469999999931 10 134679999999999
Q ss_pred hcCCCcEEEeecCCCCCCCCCCCCcccc-----------CchhHHHHHHHHHHHHHHhHHh-CCCceEEEEeccCcch--
Q 010588 400 KYRNPTVIITENGMDDPNNRFTPTKEAL-----------KDDKRIKYHNDYLTNLLAAIKE-DGCNVKGYFVWSLLDN-- 465 (506)
Q Consensus 400 rY~~~pI~ITENG~~~~~~~~~~~~g~i-----------~D~~Ri~yl~~hl~~~~~Ai~~-dGv~v~GY~~WSl~Dn-- 465 (506)
||+ .||+|+|.|++...+..-.....+ .-.-...|| ..+.+++.+ .+-...|.|+|-.--.
T Consensus 227 ry~-K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l----~~l~~~v~~~p~~~g~GvfYWeP~w~~~ 301 (332)
T PF07745_consen 227 RYG-KPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFL----RDLINAVKNVPNGGGLGVFYWEPAWIPV 301 (332)
T ss_dssp HHT--EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHH----HHHHHHHHTS--TTEEEEEEE-TT-GGG
T ss_pred HhC-CeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHH----HHHHHHHHHhccCCeEEEEeeccccccC
Confidence 995 799999999987621100000111 112344444 555555511 3679999999965433
Q ss_pred ---hcccCCCCCc-ceeE
Q 010588 466 ---WEWAAGYTSR-FGLY 479 (506)
Q Consensus 466 ---~EW~~Gy~~r-fGL~ 479 (506)
.+|..|+..- =+|+
T Consensus 302 ~~~~~~~~g~~w~n~~lF 319 (332)
T PF07745_consen 302 ENGWDWGGGSSWDNQALF 319 (332)
T ss_dssp TTHHHHTTTSSSSBGSSB
T ss_pred CcccccCCCCCccccccC
Confidence 2344554431 1555
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.05 E-value=2.4e-08 Score=102.61 Aligned_cols=302 Identities=18% Similarity=0.245 Sum_probs=177.5
Q ss_pred CCCCCeeeeecccccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEec--cccc
Q 010588 33 FPKGFVFGTASSAFQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFS--IAWS 110 (506)
Q Consensus 33 fp~~FlwG~Atsa~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~s--i~W~ 110 (506)
...+|.+|+|.++.++++.. ..+.+-.-.+|.+-.. .-|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~--------------------------------------~~~~~~~~~Fn~~t~eN~~Kw~ 47 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP--------------------------------------RYRELFAKHFNSVTPENEMKWG 47 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH--------------------------------------HHHHHHHHH-SEEEESSTTSHH
T ss_pred HhccCCEEEEechhHcCCcH--------------------------------------HHHHHHHHhCCeeeeccccchh
Confidence 46788999999988888720 0111122345555554 6999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEE--EecCCCCcHHHHhhcCCCCChh---hHHHHHHHHHHHHHHhCC-
Q 010588 111 RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYV--TLYHWDLPQALDDKYKGWLDRQ---IINDFATYAETCFQKFGD- 184 (506)
Q Consensus 111 ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~v--tl~h~~~P~wl~~~~ggw~~~~---~~~~f~~ya~~~~~~~~~- 184 (506)
.++|. .|.+| ++-.|++++-++++||++-- .+.|-..|.|+... .-+...+ ......+|.+.++++|++
T Consensus 48 ~~e~~-~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~ 122 (320)
T PF00331_consen 48 SIEPE-PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDK 122 (320)
T ss_dssp HHESB-TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhcCC-CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccc
Confidence 99999 58999 77789999999999999774 45577899999853 1223233 788999999999999995
Q ss_pred -ceeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEE
Q 010588 185 -RVKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIA 263 (506)
Q Consensus 185 -~v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~ 263 (506)
+|..|=+.|||..-.. .+-|.+. ...++++-. ---..|.+.-|+.. |+.+.-+-
T Consensus 123 g~i~~WDVvNE~i~~~~-------~~~~~r~-------------~~~~~~lG~--~yi~~aF~~A~~~~---P~a~L~~N 177 (320)
T PF00331_consen 123 GRIYAWDVVNEAIDDDG-------NPGGLRD-------------SPWYDALGP--DYIADAFRAAREAD---PNAKLFYN 177 (320)
T ss_dssp TTESEEEEEES-B-TTS-------SSSSBCT-------------SHHHHHHTT--CHHHHHHHHHHHHH---TTSEEEEE
T ss_pred cceEEEEEeeecccCCC-------ccccccC-------------ChhhhcccH--hHHHHHHHHHHHhC---CCcEEEec
Confidence 8999999999852211 0011111 112222110 01123444444433 45554332
Q ss_pred ecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcC-CccEEEEecCCccee
Q 010588 264 FDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKG-SLDFVGINHYTTFYA 342 (506)
Q Consensus 264 ~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikg-s~DFlGiNyYt~~~v 342 (506)
... .+. + + ++ ..+. .|.+.+.+ +| ++|=||++-.-.
T Consensus 178 Dy~--~~~----~-~----k~-~~~~---------------~lv~~l~~-------------~gvpIdgIG~Q~H~~--- 214 (320)
T PF00331_consen 178 DYN--IES----P-A----KR-DAYL---------------NLVKDLKA-------------RGVPIDGIGLQSHFD--- 214 (320)
T ss_dssp ESS--TTS----T-H----HH-HHHH---------------HHHHHHHH-------------TTHCS-EEEEEEEEE---
T ss_pred ccc--ccc----h-H----HH-HHHH---------------HHHHHHHh-------------CCCccceechhhccC---
Confidence 111 111 1 1 11 0110 01111111 23 478899864411
Q ss_pred ecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCC
Q 010588 343 QRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTP 422 (506)
Q Consensus 343 ~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~ 422 (506)
. + .. |..+...|+++.+. ++||.|||.-+...+..
T Consensus 215 -~------------------------------------~--~~-~~~i~~~l~~~~~~--Gl~i~ITElDv~~~~~~--- 249 (320)
T PF00331_consen 215 -A------------------------------------G--YP-PEQIWNALDRFASL--GLPIHITELDVRDDDNP--- 249 (320)
T ss_dssp -T------------------------------------T--SS-HHHHHHHHHHHHTT--TSEEEEEEEEEESSSTT---
T ss_pred -C------------------------------------C--CC-HHHHHHHHHHHHHc--CCceEEEeeeecCCCCC---
Confidence 0 0 01 77899999999664 48999999988776521
Q ss_pred CccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCC-CcceeEEEeCCCCCcccccchHHHHHH
Q 010588 423 TKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYT-SRFGLYFVDYKDNQKRYPKNSVQWFKN 500 (506)
Q Consensus 423 ~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~-~rfGL~~VD~~~~~~R~~K~S~~~y~~ 500 (506)
.+ .-.+..+.+++++.+..+.+.- .. .|.|.+.|.+.|+.+|..... .+=+|+. ..-.||++.+.+.+
T Consensus 250 ~~-~~~~~~qA~~~~~~~~~~~~~~-~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd------~~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 250 PD-AEEEEAQAEYYRDFLTACFSHP-PA--AVEGITWWGFTDGYSWRPDTPPDRPLLFD------EDYQPKPAYDAIVD 318 (320)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHTT-HC--TEEEEEESSSBTTGSTTGGHSEG--SSB-------TTSBB-HHHHHHHH
T ss_pred cc-hHHHHHHHHHHHHHHHHHHhCC-cc--CCCEEEEECCCCCCcccCCCCCCCCeeEC------CCcCCCHHHHHHHh
Confidence 00 1224567777777776666544 23 899999999999999987632 3335653 33458999887665
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.05 E-value=3.2e-09 Score=115.12 Aligned_cols=291 Identities=20% Similarity=0.268 Sum_probs=140.3
Q ss_pred ccHHHHHHHH-HcCCCeeEec--c--ccccccc-CCCC--CCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhh
Q 010588 87 RYPEDVQLMK-DMGMDAYRFS--I--AWSRIFP-NGTG--QINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDK 158 (506)
Q Consensus 87 ~~~~Di~lmk-~lG~~~~R~s--i--~W~ri~P-~g~g--~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~ 158 (506)
.|.+.+..++ ++|++.+||- + +..-..+ +++| .|| +.+.|+++|.|+++||+|+|.|.. +|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 3666666665 9999999975 2 2222322 2223 289 999999999999999999999977 77776421
Q ss_pred ------cCCCCC-hhhHHHHHHHHHHHHHHhCC-----cee--EEEeecCCceeeeccccccccCCCCcchhhhhhhcCC
Q 010588 159 ------YKGWLD-RQIINDFATYAETCFQKFGD-----RVK--HWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAG 224 (506)
Q Consensus 159 ------~ggw~~-~~~~~~f~~ya~~~~~~~~~-----~v~--~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~ 224 (506)
+.|+.+ |+..+.+.++++.+++++-+ .|. +|.+||||++..+ |..|..
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~~----------- 176 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGTP----------- 176 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-H-----------
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCCH-----------
Confidence 122333 56667777777666665543 355 5799999995311 111211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCch
Q 010588 225 NSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPS 304 (506)
Q Consensus 225 ~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~ 304 (506)
+.|- .+.. .+++++|+.. |..+||-. ...... .+ . ...|
T Consensus 177 ----~ey~---~ly~---~~~~~iK~~~---p~~~vGGp-----~~~~~~-~~---~---~~~~---------------- 215 (486)
T PF01229_consen 177 ----EEYF---ELYD---ATARAIKAVD---PELKVGGP-----AFAWAY-DE---W---CEDF---------------- 215 (486)
T ss_dssp ----HHHH---HHHH---HHHHHHHHH----TTSEEEEE-----EEETT--TH---H---HHHH----------------
T ss_pred ----HHHH---HHHH---HHHHHHHHhC---CCCcccCc-----cccccH-HH---H---HHHH----------------
Confidence 1122 2223 4555666653 68899854 000000 00 0 1111
Q ss_pred hHHHHhhccCCCCChhHHHhhcCCccEEEEecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcc
Q 010588 305 SMRNRVGSRLPRFTSSEAALLKGSLDFVGINHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLY 384 (506)
Q Consensus 305 ~~~~~l~~~lp~ft~~d~~~ikgs~DFlGiNyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~ 384 (506)
.+++..+ .-.+|||.+-.|.......... ... . ... .-..
T Consensus 216 --l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~~---------~~~--------~-------~~~--~~~~ 255 (486)
T PF01229_consen 216 --LEFCKGN------------NCPLDFISFHSYGTDSAEDINE---------NMY--------E-------RIE--DSRR 255 (486)
T ss_dssp --HHHHHHC------------T---SEEEEEEE-BESESE-SS----------EE--------E-------EB----HHH
T ss_pred --HHHHhcC------------CCCCCEEEEEecccccccccch---------hHH--------h-------hhh--hHHH
Confidence 1111111 1246999999997532111000 000 0 000 0001
Q ss_pred cChHHHHHHHHHHHhh-cCCCcEEEeecCCCCCCCCCCCCccccCc-hhHHHHHHHHHHHHHHhHHhCCCceEEEEeccC
Q 010588 385 IVPRGMRSLMNYIKQK-YRNPTVIITENGMDDPNNRFTPTKEALKD-DKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSL 462 (506)
Q Consensus 385 i~P~Gl~~~L~~~~~r-Y~~~pI~ITENG~~~~~~~~~~~~g~i~D-~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl 462 (506)
+.| .+..+.+.+.+. +++.|+++||=+..... ...++| .++..|+... .+..+|..+-++.+|++
T Consensus 256 ~~~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~------~~~~~dt~~~aA~i~k~------lL~~~~~~l~~~sywt~ 322 (486)
T PF01229_consen 256 LFP-ELKETRPIINDEADPNLPLYITEWNASISP------RNPQHDTCFKAAYIAKN------LLSNDGAFLDSFSYWTF 322 (486)
T ss_dssp HHH-HHHHHHHHHHTSSSTT--EEEEEEES-SST------T-GGGGSHHHHHHHHH-------HHHHGGGT-SEEEES-S
T ss_pred HHH-HHHHHHHHHhhccCCCCceeecccccccCC------CcchhccccchhhHHHH------HHHhhhhhhhhhhccch
Confidence 222 344444444443 55679999996655432 124455 3455554332 33245666777899999
Q ss_pred cchhcccCC----CCCcceeEEEeCCCCCcccccchHHHHHH
Q 010588 463 LDNWEWAAG----YTSRFGLYFVDYKDNQKRYPKNSVQWFKN 500 (506)
Q Consensus 463 ~Dn~EW~~G----y~~rfGL~~VD~~~~~~R~~K~S~~~y~~ 500 (506)
.|.||=..- +-.-|||+..+ .++|+|.+-|+-
T Consensus 323 sD~Fee~~~~~~pf~ggfGLlt~~------gI~KPa~~A~~~ 358 (486)
T PF01229_consen 323 SDRFEENGTPRKPFHGGFGLLTKL------GIPKPAYYAFQL 358 (486)
T ss_dssp BS---TTSS-SSSSSS-S-SEECC------CEE-HHHHHHHH
T ss_pred hhhhhccCCCCCceecchhhhhcc------CCCchHHHHHHH
Confidence 999983221 33458999643 689999887753
No 20
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.02 E-value=5.4e-08 Score=108.44 Aligned_cols=264 Identities=17% Similarity=0.200 Sum_probs=152.1
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhh-------
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDK------- 158 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~------- 158 (506)
..+..|+++||++|+|++|++- .|. + ..+++.|=+.||-++.-++-+....|+...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 4578999999999999999952 232 2 467888999999877665444333332210
Q ss_pred cCCCC----ChhhHHHHHHHHHHHHHHhCCc--eeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHH
Q 010588 159 YKGWL----DRQIINDFATYAETCFQKFGDR--VKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYI 232 (506)
Q Consensus 159 ~ggw~----~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~ 232 (506)
...|. +|+..+.+.+-++.+++++.++ |-.|.+-||+.. + .. ...
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~------------~--~~---------------~~~ 426 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPAS------------R--EQ---------------GAR 426 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCc------------c--ch---------------hHH
Confidence 01222 3567788899999999999875 567888888631 0 00 001
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhc
Q 010588 233 VAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGS 312 (506)
Q Consensus 233 ~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~ 312 (506)
. .+...++++|+.. |...|....+... .+. .
T Consensus 427 ~------~~~~l~~~~k~~D---ptR~vt~~~~~~~--------------------------~~~-~------------- 457 (604)
T PRK10150 427 E------YFAPLAELTRKLD---PTRPVTCVNVMFA--------------------------TPD-T------------- 457 (604)
T ss_pred H------HHHHHHHHHHhhC---CCCceEEEecccC--------------------------Ccc-c-------------
Confidence 1 1223445556542 3334443322100 000 0
Q ss_pred cCCCCChhHHHhhcCCccEEEEecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHH
Q 010588 313 RLPRFTSSEAALLKGSLDFVGINHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRS 392 (506)
Q Consensus 313 ~lp~ft~~d~~~ikgs~DFlGiNyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~ 392 (506)
..+...+|++|+|.|...+..... .. .. -..+..
T Consensus 458 ----------~~~~~~~Dv~~~N~Y~~wy~~~~~------------------------------~~-----~~-~~~~~~ 491 (604)
T PRK10150 458 ----------DTVSDLVDVLCLNRYYGWYVDSGD------------------------------LE-----TA-EKVLEK 491 (604)
T ss_pred ----------ccccCcccEEEEcccceecCCCCC------------------------------HH-----HH-HHHHHH
Confidence 001123599999998653321100 00 00 012445
Q ss_pred HHHHHHhhcCCCcEEEeecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCC
Q 010588 393 LMNYIKQKYRNPTVIITENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGY 472 (506)
Q Consensus 393 ~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy 472 (506)
.+....+.| +.|++|||.|.+....-....+..-..++...|+..|+.. + ++-=-|.|-|.|.++|-. +..|.
T Consensus 492 ~~~~~~~~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~----~-~~~p~~~G~~iW~~~D~~-~~~g~ 564 (604)
T PRK10150 492 ELLAWQEKL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRV----F-DRVPAVVGEQVWNFADFA-TSQGI 564 (604)
T ss_pred HHHHHHHhc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHH----H-hcCCceEEEEEEeeeccC-CCCCC
Confidence 555566667 6899999999644211000111122356777777777764 4 333489999999999932 21121
Q ss_pred ----CCcceeEEEeCCCCCcccccchHHHHHHHHh
Q 010588 473 ----TSRFGLYFVDYKDNQKRYPKNSVQWFKNFLN 503 (506)
Q Consensus 473 ----~~rfGL~~VD~~~~~~R~~K~S~~~y~~ii~ 503 (506)
....||+. ..|.||++++.||++-+
T Consensus 565 ~~~~g~~~Gl~~------~dr~~k~~~~~~k~~~~ 593 (604)
T PRK10150 565 LRVGGNKKGIFT------RDRQPKSAAFLLKKRWT 593 (604)
T ss_pred cccCCCcceeEc------CCCCChHHHHHHHHHhh
Confidence 13668873 56889999999998764
No 21
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=6.2e-10 Score=122.54 Aligned_cols=121 Identities=17% Similarity=0.268 Sum_probs=101.0
Q ss_pred cccHHHHHHHHHcCCCeeEecc-cccccccCCCCCCChHHHHHHHHH-HHHHHHcCCccEEEe-cCCCCcHHHHhh----
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSI-AWSRIFPNGTGQINQAGVDHYNKL-IDALLAKGIEPYVTL-YHWDLPQALDDK---- 158 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si-~W~ri~P~g~g~~n~~~~~~y~~~-i~~l~~~gI~p~vtl-~h~~~P~wl~~~---- 158 (506)
+-|++|+++||++|+|++|.++ +|+++||+ +|.|| +.+.|.. |+.+.+.||.+++.. +....|.|+.++
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 3478999999999999999976 99999999 69999 7789999 999999999999999 999999999875
Q ss_pred -----------cCCCCC-hhhHHHHHHHHHH----HHHH-hCCc--eeEEEeecCCce-eeeccccccccCC
Q 010588 159 -----------YKGWLD-RQIINDFATYAET----CFQK-FGDR--VKHWITFNEPHT-FTIQGYDVGLQAP 210 (506)
Q Consensus 159 -----------~ggw~~-~~~~~~f~~ya~~----~~~~-~~~~--v~~w~t~NEp~~-~~~~~y~~g~~~P 210 (506)
+|+|.+ +-+-+.|.+|++. +.+| |++. |-.|++-||... .|++.|+...|++
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~ 177 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRL 177 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHH
Confidence 577765 3333457777777 6677 6663 778999999887 7888887776663
No 22
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=5.9e-07 Score=89.90 Aligned_cols=271 Identities=17% Similarity=0.207 Sum_probs=160.3
Q ss_pred ccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEE--EecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCC
Q 010588 107 IAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYV--TLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGD 184 (506)
Q Consensus 107 i~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~v--tl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~ 184 (506)
+-|.-|+|+ .|.+| |+-=|.+.+-+++||+..-- -+.|-..|.||.. --+..+...+...++...|+.||.+
T Consensus 67 mKwe~i~p~-~G~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYkg 140 (345)
T COG3693 67 MKWEAIEPE-RGRFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYKG 140 (345)
T ss_pred cccccccCC-CCccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhccC
Confidence 479999998 69999 55579999999999997433 2457789999963 2366789999999999999999999
Q ss_pred ceeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEe
Q 010588 185 RVKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQGGSLGIAF 264 (506)
Q Consensus 185 ~v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~ 264 (506)
.|..|=+.|||-- ...++-...|.-+. ...+ ++. .|.+.-|+ ..|++|.-+--
T Consensus 141 ~~~sWDVVNE~vd-d~g~~R~s~w~~~~-------------~gpd------~I~----~aF~~Are---adP~AkL~~ND 193 (345)
T COG3693 141 SVASWDVVNEAVD-DQGSLRRSAWYDGG-------------TGPD------YIK----LAFHIARE---ADPDAKLVIND 193 (345)
T ss_pred ceeEEEecccccC-CCchhhhhhhhccC-------------CccH------HHH----HHHHHHHh---hCCCceEEeec
Confidence 9999999999853 22122211121111 0112 122 23344444 34677764422
Q ss_pred cCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcCC-ccEEEEecCCcceee
Q 010588 265 DVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKGS-LDFVGINHYTTFYAQ 343 (506)
Q Consensus 265 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikgs-~DFlGiNyYt~~~v~ 343 (506)
-. ...+| +.+.. +. -|++.|.+ ||. +|=+|++-= .+
T Consensus 194 Y~-----ie~~~----~kr~~--~~---------------nlI~~Lke-------------kG~pIDgiG~QsH----~~ 230 (345)
T COG3693 194 YS-----IEGNP----AKRNY--VL---------------NLIEELKE-------------KGAPIDGIGIQSH----FS 230 (345)
T ss_pred cc-----ccCCh----HHHHH--HH---------------HHHHHHHH-------------CCCCccceeeeee----ec
Confidence 11 11122 11111 10 02222211 454 788887632 00
Q ss_pred cCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCC
Q 010588 344 RNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPT 423 (506)
Q Consensus 344 ~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~ 423 (506)
.+| ..++-.+..+....+. .+||+|||--|.... + .
T Consensus 231 ------------------------------------~~~--~~~~~~~~a~~~~~k~--Gl~i~VTELD~~~~~-P---~ 266 (345)
T COG3693 231 ------------------------------------GDG--PSIEKMRAALLKFSKL--GLPIYVTELDMSDYT-P---D 266 (345)
T ss_pred ------------------------------------CCC--CCHHHHHHHHHHHhhc--CCCceEEEeeeeccC-C---C
Confidence 111 1122234444444444 489999999988753 1 1
Q ss_pred ccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCCCCCcce----eEEEeCCCCCcccccchHHHHH
Q 010588 424 KEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFG----LYFVDYKDNQKRYPKNSVQWFK 499 (506)
Q Consensus 424 ~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfG----L~~VD~~~~~~R~~K~S~~~y~ 499 (506)
.++-.+..+..+. ..+.-.... ...-.|.+.+.|.++|+++|..|..+|++ |.. | -.=.||+..++..
T Consensus 267 ~~~p~~~~~~~~~--~~~~f~~~~-~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~-D----~n~~pKPa~~aI~ 338 (345)
T COG3693 267 SGAPRLYLQKAAS--RAKAFLLLL-LNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLF-D----DNYQPKPAYKAIA 338 (345)
T ss_pred CccHHHHHHHHHH--HHHHHHHHH-hcccccceEEEeeeccCcccccCCccCcCCCCCccc-C----CCCCcchHHHHHH
Confidence 1122222222222 111122222 46677999999999999999999888885 221 2 2335999999998
Q ss_pred HHHhcC
Q 010588 500 NFLNST 505 (506)
Q Consensus 500 ~ii~~~ 505 (506)
.+.+.+
T Consensus 339 e~la~~ 344 (345)
T COG3693 339 EVLAPH 344 (345)
T ss_pred HHhcCC
Confidence 877654
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0014 Score=65.23 Aligned_cols=305 Identities=17% Similarity=0.254 Sum_probs=166.8
Q ss_pred ccCCCCCCCeeeeeccc-ccccCCcCCCCCCCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEecc
Q 010588 29 NRASFPKGFVFGTASSA-FQYEGAVKEDGRGPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFSI 107 (506)
Q Consensus 29 ~~~~fp~~FlwG~Atsa-~QvEG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~si 107 (506)
.....|++|.-|+-.|. .|+|-. .+...+ .++. -++=++.+|+.|+|.+|+-|
T Consensus 31 ~v~~~~~dFikGaDis~l~~lE~~-----------------Gvkf~d-~ng~--------~qD~~~iLK~~GvNyvRlRv 84 (403)
T COG3867 31 PVENSPNDFIKGADISSLIELENS-----------------GVKFFD-TNGV--------RQDALQILKNHGVNYVRLRV 84 (403)
T ss_pred eccCChHHhhccccHHHHHHHHHc-----------------CceEEc-cCCh--------HHHHHHHHHHcCcCeEEEEE
Confidence 33568999999987653 566631 111111 1121 13447999999999999976
Q ss_pred -cccccc---cCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec---CCCCcHHHHhhcCCCCC---hhhHHHHHHHHHH
Q 010588 108 -AWSRIF---PNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY---HWDLPQALDDKYKGWLD---RQIINDFATYAET 177 (506)
Q Consensus 108 -~W~ri~---P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~---h~~~P~wl~~~~ggw~~---~~~~~~f~~ya~~ 177 (506)
.=++=. +-|.|.=| ++---++-...+.+|+++++..| ||.=|..-. +--.|.+ .....+--+|.+.
T Consensus 85 wndP~dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~-kPkaW~~l~fe~lk~avy~yTk~ 160 (403)
T COG3867 85 WNDPYDSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK-KPKAWENLNFEQLKKAVYSYTKY 160 (403)
T ss_pred ecCCccCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhcC-CcHHhhhcCHHHHHHHHHHHHHH
Confidence 222111 11124445 44446667778889999999887 566665432 2245654 3334555566666
Q ss_pred HHHHhCC---ceeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010588 178 CFQKFGD---RVKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKA 254 (506)
Q Consensus 178 ~~~~~~~---~v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~ 254 (506)
+.+.+.+ ....-++=||-+- |+ .||-|... -+.-+-.++. .+++++|+.
T Consensus 161 ~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~---------------~f~k~a~L~n---~g~~avrev--- 212 (403)
T COG3867 161 VLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR---------------NFDKMAALLN---AGIRAVREV--- 212 (403)
T ss_pred HHHHHHHcCCCccceEeccccCC----ce---eccCCCCc---------------ChHHHHHHHH---HHhhhhhhc---
Confidence 6666643 5677788899762 22 15544321 1222223444 455566664
Q ss_pred CCCCcEEEEecCceeeeCCCCHHHHHHHHHHHHhhccccccccccCCCchhHHHHhhccCCCCChhHHHhhcCCccEEEE
Q 010588 255 KQGGSLGIAFDVIWYESASNSTEDAEATQRAQDFQLGWFLDPLMFGDYPSSMRNRVGSRLPRFTSSEAALLKGSLDFVGI 334 (506)
Q Consensus 255 ~~~gkIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ikgs~DFlGi 334 (506)
.|.-+|-+.+. .|.+++ ..+|+.|-+.+- .-..|.||.
T Consensus 213 ~p~ikv~lHla----~g~~n~-------------~y~~~fd~ltk~-------------------------nvdfDVig~ 250 (403)
T COG3867 213 SPTIKVALHLA----EGENNS-------------LYRWIFDELTKR-------------------------NVDFDVIGS 250 (403)
T ss_pred CCCceEEEEec----CCCCCc-------------hhhHHHHHHHHc-------------------------CCCceEEee
Confidence 35556554443 233221 123444433221 124699999
Q ss_pred ecCCcceeecCCCccccccccCCccCCCCccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEeecCCC
Q 010588 335 NHYTTFYAQRNATNLIGVVLNDSLADAGALTIPFKNGKPIADRANSIWLYIVPRGMRSLMNYIKQKYRNPTVIITENGMD 414 (506)
Q Consensus 335 NyYt~~~v~~~~~~~~~~~~~p~~~~d~~~~~~~~~g~p~~~~~~~~W~~i~P~Gl~~~L~~~~~rY~~~pI~ITENG~~ 414 (506)
+||.- +. + .-..|...|..+..||+ ..+||.|.+.+
T Consensus 251 SyYpy--Wh-------------------------------g----------tl~nL~~nl~dia~rY~-K~VmV~Etay~ 286 (403)
T COG3867 251 SYYPY--WH-------------------------------G----------TLNNLTTNLNDIASRYH-KDVMVVETAYT 286 (403)
T ss_pred ecccc--cc-------------------------------C----------cHHHHHhHHHHHHHHhc-CeEEEEEecce
Confidence 99941 10 0 01246778999999996 57999988873
Q ss_pred CCCCC------CCCCcc-----ccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhc-ccCCCCCcceeEE
Q 010588 415 DPNNR------FTPTKE-----ALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWE-WAAGYTSRFGLYF 480 (506)
Q Consensus 415 ~~~~~------~~~~~g-----~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~E-W~~Gy~~rfGL~~ 480 (506)
..-|. ..+..+ .+.=.-+..++++-++.|..- -+.+=.|-|+|-.-=+-. -.+|+...||.-|
T Consensus 287 yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv---p~~~GlGvFYWEp~wipv~~g~gwat~~~~~y 361 (403)
T COG3867 287 YTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV---PKSNGLGVFYWEPAWIPVVLGSGWATSYAAKY 361 (403)
T ss_pred eeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC---CCCCceEEEEecccceeccCCCccccchhhcc
Confidence 32211 011111 111134667888877766552 455678999996533322 2234444444443
No 24
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00011 Score=78.18 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=84.7
Q ss_pred Ccccccc-----HHHHHHHHHcCCCeeEecccccccccCC--CCCCC-hHHHHHHHHHHHHHHHcCCccEEEecCCCCcH
Q 010588 82 VDQYHRY-----PEDVQLMKDMGMDAYRFSIAWSRIFPNG--TGQIN-QAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQ 153 (506)
Q Consensus 82 ~d~y~~~-----~~Di~lmk~lG~~~~R~si~W~ri~P~g--~g~~n-~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~ 153 (506)
.-....| ++|+..||++|+|++|+-+.|-.+.+.+ ...+. ...+.+.+++|+..++.||.+++.+|+..-+.
T Consensus 64 ~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~ 143 (407)
T COG2730 64 GLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGN 143 (407)
T ss_pred ccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCC
Confidence 3445556 8999999999999999999755555532 12233 44556999999999999999999999977332
Q ss_pred HHHhhc---CCCC-ChhhHHHHHHHHHHHHHHhCC--ceeEEEeecCCce
Q 010588 154 ALDDKY---KGWL-DRQIINDFATYAETCFQKFGD--RVKHWITFNEPHT 197 (506)
Q Consensus 154 wl~~~~---ggw~-~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~ 197 (506)
-=.+.. +.+. ..++++++.+--+.++.+|++ .|--..++|||+.
T Consensus 144 ~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 211211 1122 356779999999999999987 3555789999984
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.65 E-value=0.00019 Score=73.78 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=73.8
Q ss_pred ccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec--------CCCCcHHHHhh
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY--------HWDLPQALDDK 158 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~--------h~~~P~wl~~~ 158 (506)
.|++-++.||++|+|++-+-+.|.-.||+ +|++|..+..=.+++|+.++++|+-+++-.- ...+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 58899999999999999999999999999 5999999888899999999999999776422 24589999876
Q ss_pred cCCCC---ChhhHHHHHHHHHHHHHHhCC-------ceeEEEeecCCc
Q 010588 159 YKGWL---DRQIINDFATYAETCFQKFGD-------RVKHWITFNEPH 196 (506)
Q Consensus 159 ~ggw~---~~~~~~~f~~ya~~~~~~~~~-------~v~~w~t~NEp~ 196 (506)
.+... ++...++-.+|.+.+++...+ -|..-++=||..
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 43322 355666666666666666643 355566666643
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.26 E-value=0.00037 Score=72.68 Aligned_cols=106 Identities=18% Similarity=0.335 Sum_probs=81.3
Q ss_pred ccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec-C-----------CCCc
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY-H-----------WDLP 152 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~-h-----------~~~P 152 (506)
++-.+.+++.||++|+..+-+.+=|..+|+.++++|| |+.|+++.+.+++.|++..+.|. | ..+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4478999999999999999999999999999878999 77899999999999999888763 3 4789
Q ss_pred HHHHhh-----------cCC--------CCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCc
Q 010588 153 QALDDK-----------YKG--------WLDRQIINDFATYAETCFQKFGDRVKHWITFNEPH 196 (506)
Q Consensus 153 ~wl~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 196 (506)
.|+.++ .|. |....+++.|.+|-+...++|.+.. -|+-|..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 998743 232 4554459999999999999997754 5666643
No 27
>PLN02803 beta-amylase
Probab=97.17 E-value=0.0012 Score=70.56 Aligned_cols=106 Identities=16% Similarity=0.299 Sum_probs=82.0
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCC------------CCcH
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHW------------DLPQ 153 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~------------~~P~ 153 (506)
.-.+..++.+|++|+..+-+.+=|..+|++++++|| |..|+++++.+++.|++..+.|... .+|.
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 446789999999999999999999999999889999 7779999999999999987776533 6999
Q ss_pred HHHhh-----------cCCCCC----------------hhhHHHHHHHHHHHHHHhCCceeEEEeecCCc
Q 010588 154 ALDDK-----------YKGWLD----------------RQIINDFATYAETCFQKFGDRVKHWITFNEPH 196 (506)
Q Consensus 154 wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 196 (506)
|+.+. .-|..| +.-++.|.+|-+..-++|.+... -|+.|..
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~ 251 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQ 251 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 98753 112222 23346788888888778776554 3566654
No 28
>PLN02161 beta-amylase
Probab=97.17 E-value=0.0012 Score=70.42 Aligned_cols=110 Identities=14% Similarity=0.247 Sum_probs=85.2
Q ss_pred CccccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCC------------
Q 010588 82 VDQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHW------------ 149 (506)
Q Consensus 82 ~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~------------ 149 (506)
..+....+..++.+|++|+..+-+.+=|.-+|++++++|| |..|+++++.+++.|++..+.|...
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4566678889999999999999999999999999889999 7779999999999999987776533
Q ss_pred CCcHHHHhh-----------cCCCCC----------------hhhHHHHHHHHHHHHHHhCCceeEEEeecCCc
Q 010588 150 DLPQALDDK-----------YKGWLD----------------RQIINDFATYAETCFQKFGDRVKHWITFNEPH 196 (506)
Q Consensus 150 ~~P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 196 (506)
.+|.|+.+. .-|..| +.-++.|.+|-+...++|.+... -|+.|..
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~ 261 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEIS 261 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 599998752 122222 22346788888888888877554 3556644
No 29
>PLN00197 beta-amylase; Provisional
Probab=97.16 E-value=0.0013 Score=70.60 Aligned_cols=105 Identities=16% Similarity=0.266 Sum_probs=82.1
Q ss_pred ccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCC------------CCcHH
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHW------------DLPQA 154 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~------------~~P~w 154 (506)
-.+..++.+|++|+..+-+.+=|..+|++++++|| |..|+++++.+++.|++..+.+.-. .+|.|
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~W 204 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKW 204 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHH
Confidence 47889999999999999999999999999889999 7779999999999999987776533 69999
Q ss_pred HHhh-----------cCCCCCh----------------hhHHHHHHHHHHHHHHhCCceeEEEeecCCc
Q 010588 155 LDDK-----------YKGWLDR----------------QIINDFATYAETCFQKFGDRVKHWITFNEPH 196 (506)
Q Consensus 155 l~~~-----------~ggw~~~----------------~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 196 (506)
+.+. ..|..|+ .-++.|.+|-+-.-.+|.+... -|+.|..
T Consensus 205 V~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~ 271 (573)
T PLN00197 205 VVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQ 271 (573)
T ss_pred HHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEE
Confidence 8753 1122222 2257888888888888877554 3556654
No 30
>PLN02801 beta-amylase
Probab=97.04 E-value=0.0026 Score=67.88 Aligned_cols=98 Identities=16% Similarity=0.332 Sum_probs=78.0
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecC------------CCCcH
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYH------------WDLPQ 153 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h------------~~~P~ 153 (506)
...+..++.+|++|+..+-+.+=|..+|+++.++|| |+.|+++++.++++|++..+.+.. ..+|.
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 113 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ 113 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 347889999999999999999999999999889999 777999999999999997776653 36999
Q ss_pred HHHhh-----------cCCCCC----------------hhhHHHHHHHHHHHHHHhCCce
Q 010588 154 ALDDK-----------YKGWLD----------------RQIINDFATYAETCFQKFGDRV 186 (506)
Q Consensus 154 wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~~~v 186 (506)
|+.+. .-|..| +.-++.|.+|-+..-++|.+..
T Consensus 114 WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 114 WVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred HHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 98753 112222 2345788888888888887644
No 31
>PLN03059 beta-galactosidase; Provisional
Probab=96.97 E-value=0.0041 Score=70.65 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=87.1
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe--------cCCCCcHHHHh
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL--------YHWDLPQALDD 157 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl--------~h~~~P~wl~~ 157 (506)
+.|++=++.||++|+|++-.=+.|.--||+ +|+||.+|..=..++|+.+.+.|+-+|+-. -...+|.||.+
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 358888999999999999999999999999 599999999999999999999999877642 25679999985
Q ss_pred hcCC-CC--ChhhHHHHHHHHHHHHHHhC---------CceeEEEeecCCce
Q 010588 158 KYKG-WL--DRQIINDFATYAETCFQKFG---------DRVKHWITFNEPHT 197 (506)
Q Consensus 158 ~~gg-w~--~~~~~~~f~~ya~~~~~~~~---------~~v~~w~t~NEp~~ 197 (506)
.-|- .+ ++.+.++-.+|.+.+++.++ .-|-..++=||...
T Consensus 138 ~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 138 VPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 4221 22 46667777777777777773 23566777788643
No 32
>PLN02905 beta-amylase
Probab=96.93 E-value=0.0033 Score=68.35 Aligned_cols=100 Identities=13% Similarity=0.275 Sum_probs=78.8
Q ss_pred ccccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCC------------C
Q 010588 83 DQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHW------------D 150 (506)
Q Consensus 83 d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~------------~ 150 (506)
.+..-.+..++.+|++|+..+-+.+=|.-+|++++++|| |..|+++++.+++.|++..+.|... .
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IP 359 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIP 359 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 456667889999999999999999999999999889999 7779999999999999977776533 6
Q ss_pred CcHHHHhh-----------cCCCCC----------------hhhHHHHHHHHHHHHHHhCCc
Q 010588 151 LPQALDDK-----------YKGWLD----------------RQIINDFATYAETCFQKFGDR 185 (506)
Q Consensus 151 ~P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~~~ 185 (506)
+|.|+.+. .-|..| +.-++.|.+|-+-.-.+|.+.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998753 112222 233477777777777777654
No 33
>PLN02705 beta-amylase
Probab=96.91 E-value=0.0035 Score=67.92 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=77.7
Q ss_pred cccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec-C-----------CCC
Q 010588 84 QYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY-H-----------WDL 151 (506)
Q Consensus 84 ~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~-h-----------~~~ 151 (506)
+-.-.+..++.||++|+..+-+.+=|..+|+++.++|| |..|+++++.+++.|++..+.|. | -.+
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 33557889999999999999999999999998889999 77799999999999999777665 3 269
Q ss_pred cHHHHhh-----------cCCCCC----------------hhhHHHHHHHHHHHHHHhCCc
Q 010588 152 PQALDDK-----------YKGWLD----------------RQIINDFATYAETCFQKFGDR 185 (506)
Q Consensus 152 P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~~~ 185 (506)
|.|+.+. .-|..| +.-++.|.+|.+..-++|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998753 012222 233477888887777777664
No 34
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.90 E-value=0.0049 Score=64.18 Aligned_cols=100 Identities=18% Similarity=0.305 Sum_probs=56.6
Q ss_pred HHcCCCeeEecc---cc------------cccc--cCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhh
Q 010588 96 KDMGMDAYRFSI---AW------------SRIF--PNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDK 158 (506)
Q Consensus 96 k~lG~~~~R~si---~W------------~ri~--P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~ 158 (506)
+-||++.+|+.| ++ .|.+ +..+|.+|..+=.-=+.++++++++|+..++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 348999999988 33 3332 1225677754444456689999999999755 7788999998753
Q ss_pred ---cCC-----CCChhhHHHHHHHHHHHHHHhCC---ceeEEEeecCCc
Q 010588 159 ---YKG-----WLDRQIINDFATYAETCFQKFGD---RVKHWITFNEPH 196 (506)
Q Consensus 159 ---~gg-----w~~~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~ 196 (506)
+|+ =+.++..+.|++|-..|+++|.+ .+++--++|||.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQ 184 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TT
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCC
Confidence 111 14578889999999999999933 689999999998
No 35
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.23 E-value=0.018 Score=58.56 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=62.1
Q ss_pred cccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCC--
Q 010588 84 QYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKG-- 161 (506)
Q Consensus 84 ~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~gg-- 161 (506)
..+.+++|+++||++|+|++|++. .|. + .++++.|-+.||-++.-+.....-.|-. .|-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 356889999999999999999943 122 2 5667788899998877664422211210 110
Q ss_pred --CCChhhHHHHHHHHHHHHHHhCCc--eeEEEeecCC
Q 010588 162 --WLDRQIINDFATYAETCFQKFGDR--VKHWITFNEP 195 (506)
Q Consensus 162 --w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp 195 (506)
-.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 135788888989999999999875 7778888987
No 36
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.11 E-value=0.026 Score=57.35 Aligned_cols=103 Identities=18% Similarity=0.331 Sum_probs=63.6
Q ss_pred cHHHHHHHHHcCCCeeEecc--ccccc--------cc--CC-CC-----CCChHHHHHHHHHHHHHHHcCCccEEEecCC
Q 010588 88 YPEDVQLMKDMGMDAYRFSI--AWSRI--------FP--NG-TG-----QINQAGVDHYNKLIDALLAKGIEPYVTLYHW 149 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si--~W~ri--------~P--~g-~g-----~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~ 149 (506)
++.-++..|+-|+|.+|+.+ .|... .| .. .+ .+|++=+++.+++|+.|.+.||.|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 45557889999999999999 55543 11 10 11 379999999999999999999999876655
Q ss_pred CCcHHHHhhcCCCCC---hhhHHHHHHHHHHHHHHhCCce-eEEEeecCC
Q 010588 150 DLPQALDDKYKGWLD---RQIINDFATYAETCFQKFGDRV-KHWITFNEP 195 (506)
Q Consensus 150 ~~P~wl~~~~ggw~~---~~~~~~f~~ya~~~~~~~~~~v-~~w~t~NEp 195 (506)
..|. .+ |.|-. .-..+.-.+|.+.|++||+..- ..|++-||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 2221 11 44432 3346778889999999999873 679988885
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.02 E-value=0.13 Score=48.02 Aligned_cols=102 Identities=24% Similarity=0.387 Sum_probs=68.2
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccc-----cCC--CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhh
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIF-----PNG--TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDK 158 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~-----P~g--~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~ 158 (506)
.+|+++++.|+++|++++=+- |+... |.. .+.+.....+..+.+++++.+.||+++++|+. -|.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 469999999999999988433 44332 221 11233345678999999999999999999986 3455542
Q ss_pred cCCCCCh-hhHHHHHHHHHHHHHHhCCc--eeEEEeecCCc
Q 010588 159 YKGWLDR-QIINDFATYAETCFQKFGDR--VKHWITFNEPH 196 (506)
Q Consensus 159 ~ggw~~~-~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 196 (506)
.+. .-++.=..-++.+.++||.+ +.-|-+-.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 111 12333445777888888875 44466666654
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.56 E-value=0.18 Score=55.56 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=86.5
Q ss_pred ccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe--------cCCCCcHHHHhh
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL--------YHWDLPQALDDK 158 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl--------~h~~~P~wl~~~ 158 (506)
.|++=|+.+|++|+|++..=+-|.-.||. .|++|.+|.-=..++|..+.++|+-+++-+ .+-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 57888999999999999999999999999 588998887777888999999998655432 367799999876
Q ss_pred cCC-C--CChhhHHHHHHHHHHHHHHhC-------CceeEEEeecCCc
Q 010588 159 YKG-W--LDRQIINDFATYAETCFQKFG-------DRVKHWITFNEPH 196 (506)
Q Consensus 159 ~gg-w--~~~~~~~~f~~ya~~~~~~~~-------~~v~~w~t~NEp~ 196 (506)
-|. + .|+.+..+..+|.+.++..++ .-|-.-++=||..
T Consensus 129 pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 343 2 257888999999999998553 2356667778865
No 39
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=94.55 E-value=0.13 Score=50.84 Aligned_cols=67 Identities=13% Similarity=0.273 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhc
Q 010588 388 RGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWE 467 (506)
Q Consensus 388 ~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~E 467 (506)
.++...|+.++++|+ +||+|||-|+..... .-.++...+|+++-+.. + +.---|.+|+..+.++..+
T Consensus 151 ~~~~~~i~~~~~~~~-kPIWITEf~~~~~~~-------~~~~~~~~~fl~~~~~~----l-d~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYG-KPIWITEFGCWNGGS-------QGSDEQQASFLRQALPW----L-DSQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEeecccCCCC-------CCCHHHHHHHHHHHHHH----H-hcCCCeeEEEecccccccC
Confidence 368899999999997 899999999865221 22355666666555554 4 4446899999998544433
No 40
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.27 E-value=0.3 Score=58.05 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=64.6
Q ss_pred cccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec---CCCCcHHHHhhcC
Q 010588 84 QYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY---HWDLPQALDDKYK 160 (506)
Q Consensus 84 ~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~---h~~~P~wl~~~~g 160 (506)
....+++||++||++|+|++|+| ..|. + .++.+.|=+.||=++--.. |...|.. .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~-----~-------p~fydlcDe~GilV~dE~~~e~hg~~~~~---~-- 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPN-----H-------PLWYELCDRYGLYVVDEANIETHGMVPMN---R-- 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCC-----C-------HHHHHHHHHcCCEEEEecCccccCCcccc---C--
Confidence 45678999999999999999995 2333 2 3456788889997665542 2111210 0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCc--eeEEEeecCCc
Q 010588 161 GWLDRQIINDFATYAETCFQKFGDR--VKHWITFNEPH 196 (506)
Q Consensus 161 gw~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 196 (506)
...+++..+.+.+=++.+++|..++ |-.|..-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124677788888899999999886 77899999974
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.18 E-value=0.45 Score=56.56 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=62.8
Q ss_pred cccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec---C-CCCcHHHHhhc
Q 010588 84 QYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY---H-WDLPQALDDKY 159 (506)
Q Consensus 84 ~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~---h-~~~P~wl~~~~ 159 (506)
....+++|+++||++|+|++|++. .|. + ..+.+.|=+.||=++--.. | |.....+
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH-----yP~-----~-------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~---- 411 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH-----YPN-----D-------PRFYELCDIYGLFVMAETDVESHGFANVGDI---- 411 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCC-----C-------HHHHHHHHHCCCEEEECCcccccCccccccc----
Confidence 357889999999999999999962 444 1 4567888899997665331 1 1111000
Q ss_pred CCC--CChhhHHHHHHHHHHHHHHhCCc--eeEEEeecCC
Q 010588 160 KGW--LDRQIINDFATYAETCFQKFGDR--VKHWITFNEP 195 (506)
Q Consensus 160 ggw--~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp 195 (506)
.+ .+|+..+.|.+=++.+++|.+++ |-.|..-||.
T Consensus 412 -~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 -SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred -ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 01 23556677888899999999885 6779999996
No 42
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.27 E-value=0.094 Score=55.72 Aligned_cols=109 Identities=16% Similarity=0.068 Sum_probs=80.2
Q ss_pred cHHHHHHHHHcCCCeeEecccc-cccccCCCCCCChHH-HHHHHHHHHHHHHcCCccEEEec----CCCCcHHHHhhcCC
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAW-SRIFPNGTGQINQAG-VDHYNKLIDALLAKGIEPYVTLY----HWDLPQALDDKYKG 161 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W-~ri~P~g~g~~n~~~-~~~y~~~i~~l~~~gI~p~vtl~----h~~~P~wl~~~~gg 161 (506)
.+.|++.|+.+|++..|++|-= .. .-+..|..|.+. +.+.+.+++.+...+|+.++||. |+.--.|...=.|+
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEd-c~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGED-CRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcc-hhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4678999999999999999622 22 222257788777 99999999999999999999976 33322222110122
Q ss_pred ------CCChhhHHHHHHHHHHHHHHhCCcee--EEEeecCCce
Q 010588 162 ------WLDRQIINDFATYAETCFQKFGDRVK--HWITFNEPHT 197 (506)
Q Consensus 162 ------w~~~~~~~~f~~ya~~~~~~~~~~v~--~w~t~NEp~~ 197 (506)
-..+.....|.+|++.+++.|+..+. -|..-|||.+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 33567778899999999999988754 4999999765
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=91.25 E-value=0.87 Score=52.53 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=64.1
Q ss_pred CccccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCC
Q 010588 82 VDQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKG 161 (506)
Q Consensus 82 ~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~gg 161 (506)
+-.+..+++|+++||++|+|++|.| -.|+ + .++.+.|-+.||=++=-.... -+|+
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----~-------~~~ydLcDelGllV~~Ea~~~--------~~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----S-------EEFYDLCDELGLLVIDEAMIE--------THGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----C-------HHHHHHHHHhCcEEEEecchh--------hcCC
Confidence 4456679999999999999999998 4444 2 556778888899776544321 1244
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCc--eeEEEeecCCc
Q 010588 162 WLDRQIINDFATYAETCFQKFGDR--VKHWITFNEPH 196 (506)
Q Consensus 162 w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 196 (506)
..+++..+...+=++.+++|-.++ |..|..=||.+
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 455677777778888888888764 56677777744
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=85.32 E-value=1.6 Score=45.89 Aligned_cols=99 Identities=14% Similarity=0.245 Sum_probs=72.0
Q ss_pred HHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCC-Ch-hhHHHHH
Q 010588 95 MKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWL-DR-QIINDFA 172 (506)
Q Consensus 95 mk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~-~~-~~~~~f~ 172 (506)
-+|+|+|..|.---|.=++.. =-++ +.++++++|.+...|+.=+.+-.||..+.-....+.+=. .+ ...++++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 468999999998888833333 2577 899999999999999554555667777755443333322 23 4789999
Q ss_pred HHHHHHHHHhCCc---eeEEEeecCCcee
Q 010588 173 TYAETCFQKFGDR---VKHWITFNEPHTF 198 (506)
Q Consensus 173 ~ya~~~~~~~~~~---v~~w~t~NEp~~~ 198 (506)
.++..|+.++|-+ .-....+||||..
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcc
Confidence 9999999999964 3346788999855
No 45
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=82.94 E-value=7.7 Score=39.46 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=62.8
Q ss_pred ccccHHHHHHHHHcCCCeeEecc---cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCC
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSI---AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKG 161 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si---~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~gg 161 (506)
..||.+-.++++++|||.+-+.= .-..+-|+ -++-+.++-+.++..||++.+++. |.-|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~--------~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTPE--------YLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT--------THHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCHH--------HHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 45889999999999999987653 22222222 267789999999999999999984 5677654 66
Q ss_pred -----CCChhhHHHHHHHHHHHHHHhCC
Q 010588 162 -----WLDRQIINDFATYAETCFQKFGD 184 (506)
Q Consensus 162 -----w~~~~~~~~f~~ya~~~~~~~~~ 184 (506)
-++++++.++.+=++.+.+++.|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45799999999999999999876
No 46
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=82.89 E-value=1.8 Score=43.79 Aligned_cols=102 Identities=23% Similarity=0.209 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEeecCCCCCCCCCCCCccccCchhH---------HHHHHHHHHHHHHhHHhCCCceEEE
Q 010588 387 PRGMRSLMNYIKQKYRNPTVIITENGMDDPNNRFTPTKEALKDDKR---------IKYHNDYLTNLLAAIKEDGCNVKGY 457 (506)
Q Consensus 387 P~Gl~~~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g~i~D~~R---------i~yl~~hl~~~~~Ai~~dGv~v~GY 457 (506)
+..+...+...+.. .+.|+++||.|...... .+...+..+ ..|+.++... ++....-.+.|-
T Consensus 183 ~~~~~~~~~~~~~~-~~kP~i~sEyg~~~~~~-----~g~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~g~ 253 (298)
T PF02836_consen 183 PEDFEKYLEDWYKY-PDKPIIISEYGADAYNS-----KGGDSEYWQLWSWYEEYQGAFIWDYQDQ---AIQRRDPYVAGE 253 (298)
T ss_dssp HHHHHHHHHHHHHH-CTS-EEEEEESEBBSST------TTHHHHHHHHHHCTTEEEEEESHSBHH---HEEEEETTESEE
T ss_pred HHHHHHHHHhcccc-CCCCeEehhcccccccc-----CCCccccccccccCchhhhhhhhhhhhh---hhccccccccce
Confidence 44566666554444 46899999999876542 112111111 1112222221 221233446888
Q ss_pred EeccCcchhc-ccCCCCCcceeEEEeCCCCCcccccchHHHHHHHHh
Q 010588 458 FVWSLLDNWE-WAAGYTSRFGLYFVDYKDNQKRYPKNSVQWFKNFLN 503 (506)
Q Consensus 458 ~~WSl~Dn~E-W~~Gy~~rfGL~~VD~~~~~~R~~K~S~~~y~~ii~ 503 (506)
++|+..|-.. -...-..-.||+. ..|+||++++.||++-.
T Consensus 254 ~~w~~~Df~~~~~~~~~~~nGlv~------~dR~pK~~~~~~k~~~~ 294 (298)
T PF02836_consen 254 FYWTGFDFGTEPTDYEFEYNGLVD------YDRRPKPAYYEYKSQWS 294 (298)
T ss_dssp EEEETTTTSCSSBTGGGGSBESBE------TTSEBBHHHHHHHHHHH
T ss_pred eeecceEeccCCCCCeeeeccEEC------CcCCcCHHHHHHHHHhh
Confidence 9999988543 1111111238884 56889999999998753
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=81.81 E-value=5.1 Score=35.85 Aligned_cols=89 Identities=13% Similarity=0.274 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCCeeEecc------cc--cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecC-C------CCcHH
Q 010588 90 EDVQLMKDMGMDAYRFSI------AW--SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYH-W------DLPQA 154 (506)
Q Consensus 90 ~Di~lmk~lG~~~~R~si------~W--~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h-~------~~P~w 154 (506)
+=++.||++|+|++-+.. +| +++.+. ....+ -+.+.++|++|+++||++++=+.. + ..|.|
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~---hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW 79 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPR---HPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEW 79 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcC---CCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCce
Confidence 346889999999999933 22 222222 22233 578999999999999999885543 2 35777
Q ss_pred HHhhcC------------CCC----ChhhHHHHHHHHHHHHHHh
Q 010588 155 LDDKYK------------GWL----DRQIINDFATYAETCFQKF 182 (506)
Q Consensus 155 l~~~~g------------gw~----~~~~~~~f~~ya~~~~~~~ 182 (506)
+...-. ||. |....+...+-.+.++++|
T Consensus 80 ~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 80 FVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 763211 232 3344455555566666666
No 48
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=78.87 E-value=8.2 Score=39.66 Aligned_cols=96 Identities=18% Similarity=0.371 Sum_probs=65.8
Q ss_pred cccHHHHHHHHHcCCCeeEecc-------------cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe-cC---
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSI-------------AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL-YH--- 148 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si-------------~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl-~h--- 148 (506)
...++=++.|+++|+|++=+.+ .|++..+...| ...|++.+..+|++++++||++..-+ ..
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~--~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQG--KDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCC--CCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 4467778999999999866544 34444332111 12368889999999999999987554 11
Q ss_pred -------CCCcHHHHhh-------c----CC--CCC---hhhHHHHHHHHHHHHHHhC
Q 010588 149 -------WDLPQALDDK-------Y----KG--WLD---RQIINDFATYAETCFQKFG 183 (506)
Q Consensus 149 -------~~~P~wl~~~-------~----gg--w~~---~~~~~~f~~ya~~~~~~~~ 183 (506)
-..|.|+... + |+ |+| |++.+...+-++.++++|.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1256675421 1 22 554 7888999999999999994
No 49
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=74.24 E-value=13 Score=38.15 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecC
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYH 148 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h 148 (506)
..++|+.+||+||+|++|+= .|-|. .| .|+-...|.++||=+++.|..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPS----KN------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCC----CC------HHHHHHHHHhCCCEEEEecCC
Confidence 56999999999999999973 23343 23 688889999999999999865
No 50
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=73.87 E-value=12 Score=37.68 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCcccceeccccccccCCCCCCcCCccccccHHHHHHHHHcCCCeeEecccccccccCCCC-CCChHHHHHHHHHHHHHH
Q 010588 58 GPTVWDTFSHTFGKILDNSNADVAVDQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTG-QINQAGVDHYNKLIDALL 136 (506)
Q Consensus 58 ~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g-~~n~~~~~~y~~~i~~l~ 136 (506)
|.+.|+-|....+. ..+..+.-.+.++++-|+..+++|+..+=+..-|+.-.+.... ......-....++++-.+
T Consensus 8 Gk~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~ 83 (273)
T PF10566_consen 8 GKAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAK 83 (273)
T ss_dssp EEEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHH
T ss_pred ceEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHH
Confidence 35667666542211 1122344568889999999999999999999999873322100 001111234789999999
Q ss_pred HcCCccEEEecCCC------CcHHHHh------hcC---------CCCChhhHHHHHHHHHHHHHH
Q 010588 137 AKGIEPYVTLYHWD------LPQALDD------KYK---------GWLDRQIINDFATYAETCFQK 181 (506)
Q Consensus 137 ~~gI~p~vtl~h~~------~P~wl~~------~~g---------gw~~~~~~~~f~~ya~~~~~~ 181 (506)
++|+.+++-.+|-+ +=.-+.+ +.| +-.+.+.+..|.+-++.++++
T Consensus 84 ~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 84 EKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999988866 2111111 112 224567788888888887753
No 51
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=73.48 E-value=22 Score=37.28 Aligned_cols=97 Identities=15% Similarity=0.272 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCC-CCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTG-QINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g-~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.++.|+++|++.+-+++ +-+ ++... -| ..+ .+-..+.|+.+++.|+..+-.-.=+++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~-l~R~~~---~~~~~~ai~~l~~~g~~~v~~dli~GlPg------------ 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKY-LGRIHT---FEEFLENYKLARKLGFNNINVDLMFGLPN------------ 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEEeecCCCC------------
Confidence 6789999999999666666 333 23332 12 234 55678899999999997543333445552
Q ss_pred hhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeec
Q 010588 166 QIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQ 201 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 201 (506)
++.+.|.+-.+.+.+.=.+++..+...-+|+.....
T Consensus 163 qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~ 198 (374)
T PRK05799 163 QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYN 198 (374)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHH
Confidence 344556666666554333666665555577754433
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=73.25 E-value=8.2 Score=35.81 Aligned_cols=63 Identities=24% Similarity=0.392 Sum_probs=43.2
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccc--CCCC-------CCC--hHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 84 QYHRYPEDVQLMKDMGMDAYRFSIAWSRIFP--NGTG-------QIN--QAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 84 ~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P--~g~g-------~~n--~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
.+....+-+.-+++||++++-++=-+..... ...| .++ --..+=++++|++|+++||++|+.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3455677788999999999988765544431 1000 111 1124558999999999999999876
No 53
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=71.33 E-value=10 Score=37.36 Aligned_cols=74 Identities=24% Similarity=0.220 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCC--------------CCcHHHHh----------------hcCC----CCChhh---
Q 010588 125 VDHYNKLIDALLAKGIEPYVTLYHW--------------DLPQALDD----------------KYKG----WLDRQI--- 167 (506)
Q Consensus 125 ~~~y~~~i~~l~~~gI~p~vtl~h~--------------~~P~wl~~----------------~~gg----w~~~~~--- 167 (506)
.+.++.+|+.-+++|..+|+||.=. ..|.|-.. +.++ -.+|+.
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 4678999999999999999998731 12221110 0111 113330
Q ss_pred HHHHHHHHHHHHHHhCCc-----eeEEEeecCCcee
Q 010588 168 INDFATYAETCFQKFGDR-----VKHWITFNEPHTF 198 (506)
Q Consensus 168 ~~~f~~ya~~~~~~~~~~-----v~~w~t~NEp~~~ 198 (506)
...-.+++..+.++||.. |++|..-|||.+-
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW 138 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLW 138 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGH
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhh
Confidence 123344577777787765 9999999999843
No 54
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=70.63 E-value=6.3 Score=40.51 Aligned_cols=82 Identities=20% Similarity=0.464 Sum_probs=39.9
Q ss_pred HHHHHHHHHhh--cCCCcEEEeecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceE-----EEEeccC
Q 010588 390 MRSLMNYIKQK--YRNPTVIITENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVK-----GYFVWSL 462 (506)
Q Consensus 390 l~~~L~~~~~r--Y~~~pI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~-----GY~~WSl 462 (506)
+.+.+..+-++ ++++||+|||.|++...+. ..... .- +.+.+.+.+.+ .+|.+.+ -+|+-++
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~----~a~~~--nA----~~~~~nl~~~~-~~gt~~~~~~~~~~y~F~~ 280 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP----GATPE--NA----QAYNQNLIKHV-LKGTPLRPGNGIDVYIFEA 280 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSST----TCSHH--HH----HHHHHHHHHHC-CGBBSSSBSS---EEES-S
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCC----CCCcc--hh----HHHHHHHHHHH-hCCCcccCCCCCeEEEEEE
Confidence 34555555554 5578999999999987631 01111 11 34455566666 5665542 4677888
Q ss_pred cchhcccCC--CCCcceeEEEeC
Q 010588 463 LDNWEWAAG--YTSRFGLYFVDY 483 (506)
Q Consensus 463 ~Dn~EW~~G--y~~rfGL~~VD~ 483 (506)
+|- .|..| .++.|||++-|.
T Consensus 281 FdE-~~K~~~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 281 FDE-NWKPGPEVERHWGLFYPDG 302 (310)
T ss_dssp B---TTSSSSGGGGG--SB-TTS
T ss_pred ecC-cCCCCCcccceeeeECCCC
Confidence 875 46555 577889998654
No 55
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=70.59 E-value=24 Score=35.32 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=41.6
Q ss_pred CCcCCccccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 78 ADVAVDQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 78 ~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
.|-.|..-..|+.|+++++.-+. .+|. -| -| ..-+.++...+.+.|++.++++
T Consensus 55 ~dGtCKSa~~~~sDLe~l~~~t~-~IR~-----------Y~-sD---Cn~le~v~pAa~~~g~kv~lGi 107 (305)
T COG5309 55 DDGTCKSADQVASDLELLASYTH-SIRT-----------YG-SD---CNTLENVLPAAEASGFKVFLGI 107 (305)
T ss_pred CCCCCcCHHHHHhHHHHhccCCc-eEEE-----------ee-cc---chhhhhhHHHHHhcCceEEEEE
Confidence 35578899999999999999887 5553 12 34 3336788999999999999998
No 56
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=65.37 E-value=40 Score=35.34 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCeeEecc-cc-cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AW-SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQ 166 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W-~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~ 166 (506)
++.+++|+++|++.+-+++ += .++...=....+ .+-..+.|+.+++.|+..+-.-.=+++|. +
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dli~GlPg------------q 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDLIYALPG------------Q 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEeeecCCCC------------C
Confidence 7889999999999888888 43 344433112345 55678999999999997543323445663 2
Q ss_pred hHHHHHHHHHHHHHHhCCceeEEEeecCCceeeecccccc
Q 010588 167 IINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVG 206 (506)
Q Consensus 167 ~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g 206 (506)
+.+.+.+=.+.+.+.=.+++......-+|+.....-+..|
T Consensus 165 t~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g 204 (377)
T PRK08599 165 TIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKG 204 (377)
T ss_pred CHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcC
Confidence 3344555555544332345555555556765444333333
No 57
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=65.29 E-value=45 Score=34.56 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=63.4
Q ss_pred CCcCCccccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHh
Q 010588 78 ADVAVDQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDD 157 (506)
Q Consensus 78 ~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~ 157 (506)
+-+|.=||+ |+--+. ..+.|+..+|+. +|++-. -+..+.+++.++++|+..=++.+|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRIN----------PGNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRIN----------PGNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEEC----------CCCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 445666776 444433 346799999975 355532 467899999999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHH
Q 010588 158 KYKGWLDRQIINDFATYAETC 178 (506)
Q Consensus 158 ~~ggw~~~~~~~~f~~ya~~~ 178 (506)
+||+-+....++.-.++++.+
T Consensus 140 kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 997655455566655666554
No 58
>PLN02361 alpha-amylase
Probab=60.47 E-value=16 Score=38.88 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=46.9
Q ss_pred ccccccHHHHHHHHHcCCCeeEecccccccccCCCC-----CCChH--HHHHHHHHHHHHHHcCCccEEEe--cC
Q 010588 83 DQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTG-----QINQA--GVDHYNKLIDALLAKGIEPYVTL--YH 148 (506)
Q Consensus 83 d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g-----~~n~~--~~~~y~~~i~~l~~~gI~p~vtl--~h 148 (506)
.+|....+-+.-+++||++++=++=.....-+.|-. .+|.. ..+=++++|++|+++||++|+.+ .|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 478899999999999999999887654433333300 11110 13448999999999999999864 46
No 59
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=59.84 E-value=29 Score=34.01 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhh
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQI 167 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~ 167 (506)
+++++++++.|++.+|++++-+...-.- .+.=.+..++...+.++.+++.|+++.+.+.+..-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 8999999999999999999766321110 011122347778899999999999999999765554 123
Q ss_pred HHHHHHHHHHHH
Q 010588 168 INDFATYAETCF 179 (506)
Q Consensus 168 ~~~f~~ya~~~~ 179 (506)
.+.+.++++.+.
T Consensus 145 ~~~l~~~~~~~~ 156 (265)
T cd03174 145 PEYVLEVAKALE 156 (265)
T ss_pred HHHHHHHHHHHH
Confidence 445566666654
No 60
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=59.66 E-value=31 Score=33.53 Aligned_cols=74 Identities=22% Similarity=0.446 Sum_probs=50.5
Q ss_pred ccccHHHHHHHHHcCCCeeEe----------------------cccccccccCCCCCCChHHHHHHHHHHHHHHHcCCcc
Q 010588 85 YHRYPEDVQLMKDMGMDAYRF----------------------SIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEP 142 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~----------------------si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p 142 (506)
--.-+.=++|||+||.+++.| ++ | +||.| -+| ++.+.+++..+++.|++-
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG--GId---l~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG--GID---LDNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC--Ccc---HHhHHHHHHHHHHcCCCe
Confidence 345577899999999999885 23 3 68984 489 888999999999999985
Q ss_pred EEEecCCCCcHHHHhhcCCCCChhhHHH
Q 010588 143 YVTLYHWDLPQALDDKYKGWLDRQIIND 170 (506)
Q Consensus 143 ~vtl~h~~~P~wl~~~~ggw~~~~~~~~ 170 (506)
++ +|- + .-.-|+-.|-+.++-+..
T Consensus 206 vi--PHI-Y-ssiIDk~tG~TrpedV~~ 229 (236)
T TIGR03581 206 VI--PHV-Y-SSIIDKETGNTRVEDVKQ 229 (236)
T ss_pred ec--ccc-c-eeccccccCCCCHHHHHH
Confidence 43 331 0 012233356666655443
No 61
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=59.65 E-value=23 Score=35.62 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCeeEeccccc-ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEE
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWS-RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVT 145 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vt 145 (506)
+|.++.||++|++.+-++++-+ .+.+.-.+..+ ++.+.+.++.++++||.+.++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s---~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHT---YDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCC---HHHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999821 13333112234 777889999999999985443
No 62
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=59.17 E-value=44 Score=34.30 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCC-eeEecc-ccc-cccc-C-CCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCC
Q 010588 89 PEDVQLMKDMGMD-AYRFSI-AWS-RIFP-N-GTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWL 163 (506)
Q Consensus 89 ~~Di~lmk~lG~~-~~R~si-~W~-ri~P-~-g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~ 163 (506)
++.+++|+++|++ .+-+++ +-+ ++.- . +.| ++ .+-+.+.++.++++||.+.+.+.- .+|. ..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i~-G~P~--------~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLLF-KPPF--------LS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEEe-cCCC--------CC
Confidence 7889999999998 577777 433 2331 1 122 45 566889999999999986655532 3452 11
Q ss_pred ChhhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeeccccccccCC
Q 010588 164 DRQIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQAP 210 (506)
Q Consensus 164 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~P 210 (506)
..+.++.+.+.++.+.. ++++|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23677888888887765 45888877777777765555566677665
No 63
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=57.27 E-value=54 Score=33.42 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=54.6
Q ss_pred HHHHHcCCCeeEecc--cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHH
Q 010588 93 QLMKDMGMDAYRFSI--AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIIND 170 (506)
Q Consensus 93 ~lmk~lG~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~ 170 (506)
..+++.|++.+-++. .-..-.|.-.|...........+.|..|+++|++++|.+--+.-.... .++..++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~-------~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLA-------TSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCccc-------cCcccHHH
Confidence 567889999888775 222222321121111113446788999999999999988443322110 13467788
Q ss_pred HHHHHHHHHHHhCC-cee
Q 010588 171 FATYAETCFQKFGD-RVK 187 (506)
Q Consensus 171 f~~ya~~~~~~~~~-~v~ 187 (506)
|++....+.++|+= .|+
T Consensus 92 ~~~a~~~~i~~y~~dgiD 109 (294)
T cd06543 92 LAAAYQKVIDAYGLTHLD 109 (294)
T ss_pred HHHHHHHHHHHhCCCeEE
Confidence 88888888999863 344
No 64
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=57.09 E-value=60 Score=33.87 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCC-CCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTG-QINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g-~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.++.|+++|++.+.+++ +-+ ++... -| ..+ .+-+.+.|+.+++.|+.++-.-.-+.+|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~~~---~~~~~~ai~~l~~~G~~~v~~dli~GlPg------------ 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQHS---AKNIAPAIETALKSGIENISLDLMYGLPL------------ 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHH-hCCCCC---HHHHHHHHHHHHHcCCCeEEEeccCCCCC------------
Confidence 6889999999999888887 453 34433 12 234 56678899999999998654433445662
Q ss_pred hhHHHHHHHHHHHHHHhCCceeEEEeecCCc
Q 010588 166 QIINDFATYAETCFQKFGDRVKHWITFNEPH 196 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 196 (506)
++.+.+.+-.+.+.+.=.+++......=||+
T Consensus 164 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 QTLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred CCHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 3344555555555543334555444444554
No 65
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.39 E-value=48 Score=35.97 Aligned_cols=111 Identities=21% Similarity=0.370 Sum_probs=71.1
Q ss_pred ccccHHHHHHHHHcCCCeeEec------------------------------ccccccccCC--CCCCChH----HHHHH
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFS------------------------------IAWSRIFPNG--TGQINQA----GVDHY 128 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~s------------------------------i~W~ri~P~g--~g~~n~~----~~~~y 128 (506)
|.+|++.|+-|+-.|+|..=.- ++|.|+---. +|...+. -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6799999999999999965422 2344443221 2444322 12223
Q ss_pred HHHHHHHHHcCCccEEEecCCCCcHHHHhh--------cCCCC---------------ChhhHHHHHHHHHHHHHHhCC-
Q 010588 129 NKLIDALLAKGIEPYVTLYHWDLPQALDDK--------YKGWL---------------DRQIINDFATYAETCFQKFGD- 184 (506)
Q Consensus 129 ~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~--------~ggw~---------------~~~~~~~f~~ya~~~~~~~~~- 184 (506)
+++|+.+++-||+|++-.+-.-.|..|..- .+.|. .|-+.+-=..|-+...+.||.
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 689999999999999998888889888753 12232 233334445667778888985
Q ss_pred -ceeEEEeecCC
Q 010588 185 -RVKHWITFNEP 195 (506)
Q Consensus 185 -~v~~w~t~NEp 195 (506)
++-.==||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 23333477774
No 66
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.26 E-value=49 Score=33.72 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=71.7
Q ss_pred cHHHHHHHHHcCCC--eeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCC---cHHHH------
Q 010588 88 YPEDVQLMKDMGMD--AYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDL---PQALD------ 156 (506)
Q Consensus 88 ~~~Di~lmk~lG~~--~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~---P~wl~------ 156 (506)
..+-++.+++.|+. ++=+.+.|..-. ++=.+|++-+---.++++.|++.|+++++.+.=+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 46667889999965 666666785321 223556555666789999999999998886543221 11111
Q ss_pred ---hhcC----------C------CCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCc
Q 010588 157 ---DKYK----------G------WLDRQIINDFATYAETCFQKFGDRVKHWITFNEPH 196 (506)
Q Consensus 157 ---~~~g----------g------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 196 (506)
++-| | ++||+.++.|.+..+.+...+|= =-+|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 1111 1 77899999999999988877763 24588899996
No 67
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=54.59 E-value=40 Score=34.95 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHHHHHcCCccEEEecCCCC-cHHHHhh--cCCCCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCc
Q 010588 120 INQAGVDHYNKLIDALLAKGIEPYVTLYHWDL-PQALDDK--YKGWLDRQIINDFATYAETCFQKFGDRVKHWITFNEPH 196 (506)
Q Consensus 120 ~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~-P~wl~~~--~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 196 (506)
+|++-+---++++++|++.|++.++.+.-+-. -..+... +=-|+||+..+.|.+..+.+.+ .|- --+|+=.|||.
T Consensus 58 ~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~ 135 (332)
T cd06601 58 TNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPA 135 (332)
T ss_pred ecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcc
Confidence 33333333478999999999987665431110 0000000 0127789999988776655433 332 23799999999
Q ss_pred eeeec
Q 010588 197 TFTIQ 201 (506)
Q Consensus 197 ~~~~~ 201 (506)
++...
T Consensus 136 ~~~~~ 140 (332)
T cd06601 136 IMPSY 140 (332)
T ss_pred cccCC
Confidence 77553
No 68
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=53.89 E-value=8.9 Score=31.44 Aligned_cols=19 Identities=37% Similarity=0.812 Sum_probs=13.8
Q ss_pred HHHHhCC--ceeEEEeecC-Cc
Q 010588 178 CFQKFGD--RVKHWITFNE-PH 196 (506)
Q Consensus 178 ~~~~~~~--~v~~w~t~NE-p~ 196 (506)
++++||+ +|.+|-++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567776 7999999999 65
No 69
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=53.83 E-value=63 Score=33.84 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQ 166 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~ 166 (506)
++.+++|+++|++.+.+++ +-+ ++...=....+ .+-..+.++.+++.||..+-.-.=+.+|. +
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s---~~~~~~a~~~l~~~g~~~v~~dli~GlPg------------q 172 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHT---PGRAVAAAREARAAGFEHVNLDLIYGTPG------------E 172 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEeccCCC------------C
Confidence 6889999999999888877 544 22222112344 55578899999999998343322344552 3
Q ss_pred hHHHHHHHHHHHHHHhCCceeEEEeecCCceeeecccccc
Q 010588 167 IINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVG 206 (506)
Q Consensus 167 ~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g 206 (506)
+.+.|.+=.+.+.+.=-+++......-+|+.....-+..|
T Consensus 173 t~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g 212 (375)
T PRK05628 173 SDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRG 212 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcC
Confidence 3455555555544433356665555556665444333333
No 70
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=53.43 E-value=76 Score=34.28 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCeeEecc-cccccccCCCC-CCChHHHHHHHHHHHHHHHcCCc-cEEEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWSRIFPNGTG-QINQAGVDHYNKLIDALLAKGIE-PYVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~ri~P~g~g-~~n~~~~~~y~~~i~~l~~~gI~-p~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.+++|+++|+|.+.+++ |-+.-.-+.-| ..+ .+-..+.|+.+++.|.. +.+.| =+.+|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~---~~~~~~~i~~l~~~g~~~v~~Dl-I~GlPg------------ 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDD---REEVLARLEELVARDRAAVVCDL-IFGLPG------------ 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCC---HHHHHHHHHHHHhCCCCcEEEEE-EeeCCC------------
Confidence 6889999999999999988 65432222112 234 34467889999999944 44443 345552
Q ss_pred hhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeeccccccccC
Q 010588 166 QIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQA 209 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~ 209 (506)
++.+.+.+=.+.+.+-=-++|..+...-+|+......+..|..+
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 23344444455555444578888888888886544444445444
No 71
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=53.00 E-value=45 Score=33.08 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
.+|++...+.|++.+|+.++.+.+.-.. -+.=.+++++-..++++.++++|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999877664321 122235678889999999999999877655
No 72
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=52.89 E-value=48 Score=36.10 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=42.5
Q ss_pred cccccHHH-----HHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 010588 84 QYHRYPED-----VQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP 152 (506)
Q Consensus 84 ~y~~~~~D-----i~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P 152 (506)
.|..|.+| ++...+.|++.+|+..+-+. ++-....++..+++|+.+..++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd-------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALND-------------IRNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCH-------------HHHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 35667888 99999999999999986553 2335777888889999888777654445
No 73
>PLN00196 alpha-amylase; Provisional
Probab=52.16 E-value=22 Score=38.30 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=45.7
Q ss_pred cccccHHHHHHHHHcCCCeeEecccccccccCCC-----CCCCh---HHHHHHHHHHHHHHHcCCccEEE--ecCC
Q 010588 84 QYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGT-----GQINQ---AGVDHYNKLIDALLAKGIEPYVT--LYHW 149 (506)
Q Consensus 84 ~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~-----g~~n~---~~~~~y~~~i~~l~~~gI~p~vt--l~h~ 149 (506)
+|....+.+.-+++||++++=++=......+.|- -.+|. -.-+=++++|++|+++||++|+. +.|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 4566788899999999999988865544333331 01221 11234899999999999999997 4453
No 74
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=52.01 E-value=28 Score=34.40 Aligned_cols=57 Identities=23% Similarity=0.473 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCCCCCC--------C--hHHHHHHHHHHHHHHHcCCccEEEec
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQI--------N--QAGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~--------n--~~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
.+-++-+|+||++++-++=-+.. |.+...| | --..+=+++||++|+++||++|+.+-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFES--PNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EES--SSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccc--ccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 45678999999999998754441 1110001 1 12345589999999999999999863
No 75
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=51.52 E-value=1.1e+02 Score=31.78 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=60.4
Q ss_pred cCCccccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhc
Q 010588 80 VAVDQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKY 159 (506)
Q Consensus 80 ~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ 159 (506)
+|.=||+ |+= .....+.|+..+|+. +|++-.+ +....+++.++++||..=++.+|-.+..-+.++|
T Consensus 78 VaDiHf~-~rl-a~~~~~~g~~k~RIN----------PGNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 78 VADIHFD-YRL-ALEAAECGVDKVRIN----------PGNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEEeecc-HHH-HHHhhhcCcceEEEC----------CcccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 4444666 332 333456678888874 3544432 3689999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 010588 160 KGWLDRQIINDFATYAETC 178 (506)
Q Consensus 160 ggw~~~~~~~~f~~ya~~~ 178 (506)
|+-+.+..++-=.++|+.+
T Consensus 144 ~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 144 GGPTPEALVESALEHAELL 162 (361)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8765555555555555543
No 76
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=50.62 E-value=93 Score=33.05 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCCCChHHHHHHHHHHHHHHHcCCcc-EEEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQINQAGVDHYNKLIDALLAKGIEP-YVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p-~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.++.|+++|+|.+-+++ +-+ ++...=.-..+ .+-..+.++.+++.|+.. -+.| =+++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~G~~~v~~dl-I~GlPg------------ 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHR---VKDIFAAVDLIHQAGIENFSLDL-ISGLPH------------ 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCeEEEEe-ecCCCC------------
Confidence 6889999999999888877 443 22222111344 344678899999999984 3444 345552
Q ss_pred hhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeeccccccccC
Q 010588 166 QIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQA 209 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~ 209 (506)
++.+.+.+=++.+.+-=.++|......-||+......+..|.+.
T Consensus 179 qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~ 222 (400)
T PRK07379 179 QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAP 222 (400)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCC
Confidence 23444555445544434567887777788886655555555443
No 77
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=49.62 E-value=58 Score=34.19 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=47.5
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecC
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYH 148 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h 148 (506)
-++|++.+.+.|++.+|+.++-|.+.-+. -+.=.++.++-..+.++.+++.|+++.+++-.
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 58999999999999999998766654331 12223556888899999999999998887743
No 78
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=49.56 E-value=29 Score=35.06 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=60.6
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChh
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQ 166 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~ 166 (506)
-+.|++++++.|++.+++.++=|...-.. -+.--++.++-..++++.+++.|+++.+++-+|+.|- +-
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~ 144 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RD 144 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cC
Confidence 36799999999999999999555443331 1233467789999999999999999999998877663 11
Q ss_pred hHHHHHHHHHHHHH
Q 010588 167 IINDFATYAETCFQ 180 (506)
Q Consensus 167 ~~~~f~~ya~~~~~ 180 (506)
..+.+.++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ 158 (280)
T cd07945 145 SPDYVFQLVDFLSD 158 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 23566777776654
No 79
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=49.38 E-value=57 Score=36.68 Aligned_cols=51 Identities=25% Similarity=0.325 Sum_probs=34.8
Q ss_pred ccccHHH-----HHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecC
Q 010588 85 YHRYPED-----VQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYH 148 (506)
Q Consensus 85 y~~~~~D-----i~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h 148 (506)
|.+|.+| +++.++.|++.+|++.+.+.+ +-....|+.++++|.....++.+
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 5555555 999999999999999755433 23456666777777765555443
No 80
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=49.36 E-value=87 Score=32.13 Aligned_cols=110 Identities=8% Similarity=0.057 Sum_probs=63.5
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCC--CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCC---CcHHHHhh----
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNG--TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWD---LPQALDDK---- 158 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g--~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~---~P~wl~~~---- 158 (506)
.++-++.+++.|+..=-+-|+|.-....+ .-.+|.+-+---.++|+.|+++|+++++.+.-+- .+.+-+-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 26 LLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred HHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 34556667777665444444432121121 2234555555568999999999999887663221 12111000
Q ss_pred -----c---------C--C---CCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCcee
Q 010588 159 -----Y---------K--G---WLDRQIINDFATYAETCFQKFGDRVKHWITFNEPHTF 198 (506)
Q Consensus 159 -----~---------g--g---w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 198 (506)
- | + |+||+..+.|.+..+..+...|- --+|+=+|||..+
T Consensus 106 ~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~ 163 (319)
T cd06591 106 LIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYS 163 (319)
T ss_pred EEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCcc
Confidence 0 1 2 67888888887766555544442 3568999999854
No 81
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=48.70 E-value=98 Score=32.32 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQ 166 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~ 166 (506)
++.+++|+++|++.+-+++ +=+ ++...=....+ .+-..+.++.++++|+.++-.-.=+++|. +
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI~GlPg------------q 167 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHT---IQDSKEAINLLHKNGIYNISCDFLYCLPI------------L 167 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEeecCCC------------C
Confidence 7899999999999877777 443 33333112345 45578999999999998544333445562 3
Q ss_pred hHHHHHHHHHHHHHHhCCceeEEEeecCCcee
Q 010588 167 IINDFATYAETCFQKFGDRVKHWITFNEPHTF 198 (506)
Q Consensus 167 ~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 198 (506)
+.+.|.+=.+.+.+-=.+++..+...=||+..
T Consensus 168 t~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~ 199 (353)
T PRK05904 168 KLKDLDEVFNFILKHKINHISFYSLEIKEGSI 199 (353)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeEecCCCh
Confidence 45556665665544333566655555566543
No 82
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.53 E-value=93 Score=31.89 Aligned_cols=108 Identities=14% Similarity=0.215 Sum_probs=65.1
Q ss_pred cHHHHHHHHHcCCC--eeEecccccccccC----CCCCCChHHHHHHHHHHHHHHHcCCccEEEecCC---CCcHHHH--
Q 010588 88 YPEDVQLMKDMGMD--AYRFSIAWSRIFPN----GTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHW---DLPQALD-- 156 (506)
Q Consensus 88 ~~~Di~lmk~lG~~--~~R~si~W~ri~P~----g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~---~~P~wl~-- 156 (506)
..+-++.+++.|+. ++=+.+.|...... +.-.+|++-+---+++|+.|+++|++.++.+.-+ +.|..-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 35556677777765 44455567443321 0113444444446789999999999988877543 2333211
Q ss_pred hh-c-------------------C---CCCChhhHHHHHHHHHHHHHHhCCcee-EEEeecCCcee
Q 010588 157 DK-Y-------------------K---GWLDRQIINDFATYAETCFQKFGDRVK-HWITFNEPHTF 198 (506)
Q Consensus 157 ~~-~-------------------g---gw~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~~~ 198 (506)
++ + + -++||+..+.|.+..+.+ ... .|+ +|+=+|||.++
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~--Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQ--GVTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhC--CccEEEecCCCcccc
Confidence 00 0 1 266899999998877765 333 344 58889999744
No 83
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=47.88 E-value=84 Score=31.90 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=66.8
Q ss_pred cHHHHHHHHHcCCC--eeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCC---CcHHHHh--h--
Q 010588 88 YPEDVQLMKDMGMD--AYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWD---LPQALDD--K-- 158 (506)
Q Consensus 88 ~~~Di~lmk~lG~~--~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~---~P~wl~~--~-- 158 (506)
.++-++.+++.||. ++=+.+.|.+-.-.++=.+|++-+--.+++|++|+++|+++++.+.-+. .|..-+. +
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 56778899999955 4666667874322112245555555578999999999999877664222 2221110 0
Q ss_pred -----------------cCC---CCChhhHHHHHHHHHHHHHHhCCceeE-EEeecCC
Q 010588 159 -----------------YKG---WLDRQIINDFATYAETCFQKFGDRVKH-WITFNEP 195 (506)
Q Consensus 159 -----------------~gg---w~~~~~~~~f~~ya~~~~~~~~~~v~~-w~t~NEp 195 (506)
.++ ++||+..+.|.+..+.+.+ +| |+. |+=+||+
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 011 6789999999888776554 44 544 6667886
No 84
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=47.52 E-value=35 Score=39.00 Aligned_cols=55 Identities=22% Similarity=0.452 Sum_probs=38.7
Q ss_pred HHHHHHcCCCeeEe----cccccccccC-CC---------------CCC--Ch---HHHHHHHHHHHHHHHcCCccEEEe
Q 010588 92 VQLMKDMGMDAYRF----SIAWSRIFPN-GT---------------GQI--NQ---AGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 92 i~lmk~lG~~~~R~----si~W~ri~P~-g~---------------g~~--n~---~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
|+-+|+|||+++.+ ++.+.+..++ +. |.| ++ ..+.=++.||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999983 3444333321 10 111 22 246678999999999999999974
No 85
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=46.67 E-value=1.2e+02 Score=31.69 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCCeeEecc-cccc-cccCCCCCCChHHHHHHHHHHHHHHHcCCccE-EEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWSR-IFPNGTGQINQAGVDHYNKLIDALLAKGIEPY-VTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~-vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.++.|+++|+|.+.+++ +=+. +.-.=....+ .+-..+.|+.+++.|+..+ +.| =+.+|.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dl-i~GlPg------------ 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDL-IYGLPT------------ 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEe-ecCCCC------------
Confidence 6889999999999777776 3322 2211011234 4446778999999999754 333 345552
Q ss_pred hhHHHHHHHHHHHHHHhCCceeEEEeecCCceeee
Q 010588 166 QIINDFATYAETCFQKFGDRVKHWITFNEPHTFTI 200 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~ 200 (506)
++.+.|.+=++.+.+.=-++|..+...-||+....
T Consensus 167 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~ 201 (370)
T PRK06294 167 QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFY 201 (370)
T ss_pred CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHH
Confidence 35566777777766544578888888888876543
No 86
>PRK12313 glycogen branching enzyme; Provisional
Probab=46.62 E-value=91 Score=35.32 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=61.9
Q ss_pred ccccHHHH-HHHHHcCCCeeEecc--------cc-------cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe--
Q 010588 85 YHRYPEDV-QLMKDMGMDAYRFSI--------AW-------SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL-- 146 (506)
Q Consensus 85 y~~~~~Di-~lmk~lG~~~~R~si--------~W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl-- 146 (506)
|.-..+.+ .-+|+||++++=+.= +| -.+.|. -|. .+=++++|++|.++||++|+.+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-YGT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-CCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 44445664 899999999997543 22 122222 122 3348999999999999999984
Q ss_pred cCCCCcH----HHH--------h---h-cCC-------CCChhhHHHHHHHHHHHHHHhCCceeEEEe
Q 010588 147 YHWDLPQ----ALD--------D---K-YKG-------WLDRQIINDFATYAETCFQKFGDRVKHWIT 191 (506)
Q Consensus 147 ~h~~~P~----wl~--------~---~-~gg-------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 191 (506)
.|..... ++. + . +.+ +.++++.+.+.+-++.-+++|+ |+-|-.
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~R~ 308 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGLRV 308 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEEEE
Confidence 4543211 110 0 0 012 3368888888888888888885 444443
No 87
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.64 E-value=1.1e+02 Score=31.78 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=43.9
Q ss_pred HHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecC
Q 010588 92 VQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYH 148 (506)
Q Consensus 92 i~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h 148 (506)
++.++++|.+++-+-+-|. |+.+..+|..-+++..++.++|++.||.-++=+.-
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~ 165 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLT 165 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 5779999999999999887 55222357788999999999999999998875433
No 88
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=45.41 E-value=1.2e+02 Score=33.40 Aligned_cols=97 Identities=20% Similarity=0.368 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCCcEEEeecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccC-cch---hcc
Q 010588 393 LMNYIKQKYRNPTVIITENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSL-LDN---WEW 468 (506)
Q Consensus 393 ~L~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl-~Dn---~EW 468 (506)
.|..++++|++..|+-||...+..... ....+-.=.|. ..+...+...+ ..| +.||..|-| ||. .-|
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~---~~~~~g~w~~~---~~y~~~ii~~l-nn~--~~gw~~WNl~LD~~GGP~~ 389 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWD---TSVDLGSWDRA---ERYAHDIIGDL-NNW--VSGWIDWNLALDENGGPNW 389 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS----SS-TTHHHHH---HHHHHHHHHHH-HTT--EEEEEEEESEBETTS---T
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcc---cccccccHHHH---HHHHHHHHHHH-Hhh--ceeeeeeeeecCCCCCCcc
Confidence 467899999999999999866543211 00011111232 23444556667 677 579999998 443 234
Q ss_pred cCCCCCcceeEEEeCCCCCcccccchHHHHHHH
Q 010588 469 AAGYTSRFGLYFVDYKDNQKRYPKNSVQWFKNF 501 (506)
Q Consensus 469 ~~Gy~~rfGL~~VD~~~~~~R~~K~S~~~y~~i 501 (506)
..++.. ..+-||.++ .+-+..+..+.++.+
T Consensus 390 ~~n~~d--~~iivd~~~-~~~~~~p~yY~~gHf 419 (496)
T PF02055_consen 390 VGNFCD--APIIVDSDT-GEFYKQPEYYAMGHF 419 (496)
T ss_dssp T---B----SEEEEGGG-TEEEE-HHHHHHHHH
T ss_pred cCCCCC--ceeEEEcCC-CeEEEcHHHHHHHHH
Confidence 444433 334578766 444555566655544
No 89
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=45.25 E-value=3.3e+02 Score=29.16 Aligned_cols=136 Identities=14% Similarity=0.144 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCeeEecc--cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccE-EEecCCCCcHH--HHhhcCCCC
Q 010588 89 PEDVQLMKDMGMDAYRFSI--AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPY-VTLYHWDLPQA--LDDKYKGWL 163 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~-vtl~h~~~P~w--l~~~~ggw~ 163 (506)
.+|++.++++.--.-|+++ .|. .+|.+. +=+.++++||..- +....|..|+- -.-++|.+.
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd--------~vD~~e------lk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD--------KADPKE------LKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC--------cCCHHH------HHHHHHHcCCccceeccccccCcccccccccccccC
Confidence 7888888888777777776 882 246444 4488999999988 66666877732 122458888
Q ss_pred Ch--hhHHHHHHHHH---HHHHHhCCceeEEEeecCCceeeeccccccccCCCCcchhhhhhhcCCCCCChHHHHHHHHH
Q 010588 164 DR--QIINDFATYAE---TCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNAL 238 (506)
Q Consensus 164 ~~--~~~~~f~~ya~---~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l 238 (506)
|| ++.+.-.+-+. .+.+++|.+. +..|.| .|.-.|+..+. ...
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~----------v~IW~g--DG~~yP~Q~~~----------------~~~---- 186 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKA----------LTVWIG--DGSNFPGQSNF----------------TRA---- 186 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCe----------eEEECC--CCCCCcCccch----------------HHH----
Confidence 84 45555445444 4455666532 223444 34445654321 111
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEecCceeeeCC
Q 010588 239 LTHAKVADIYRKKYKAKQGGSLGIAFDVIWYESAS 273 (506)
Q Consensus 239 lAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~P~~ 273 (506)
-.+.++.+++++...++. .-+.+..-+|+|..
T Consensus 187 --~~rl~esL~eI~~~~pd~-~k~~iEyKpfEP~~ 218 (412)
T TIGR02629 187 --FERYLDAMKAVYAGLPDD-WKLFTEHKMYEPAF 218 (412)
T ss_pred --HHHHHHHHHHHHhhCCcc-ceEEEecccCCCce
Confidence 123345555555444552 35667777888864
No 90
>PRK05402 glycogen branching enzyme; Provisional
Probab=45.12 E-value=1.1e+02 Score=35.17 Aligned_cols=98 Identities=14% Similarity=0.220 Sum_probs=60.9
Q ss_pred cccHHHH-HHHHHcCCCeeEeccc--------cc-------ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe--c
Q 010588 86 HRYPEDV-QLMKDMGMDAYRFSIA--------WS-------RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL--Y 147 (506)
Q Consensus 86 ~~~~~Di-~lmk~lG~~~~R~si~--------W~-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl--~ 147 (506)
.-..+.+ .-+|+||++++-+.=- |. .+.|. -|. .+=++++|++|.++||++|+.+ .
T Consensus 265 ~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~-~Gt-----~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 265 RELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR-FGT-----PDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3334453 7789999999876542 21 12222 121 3448999999999999999984 3
Q ss_pred CCCCc-----------HHHHh-----hcC-------CCCChhhHHHHHHHHHHHHHHhCCceeEEEe
Q 010588 148 HWDLP-----------QALDD-----KYK-------GWLDRQIINDFATYAETCFQKFGDRVKHWIT 191 (506)
Q Consensus 148 h~~~P-----------~wl~~-----~~g-------gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 191 (506)
|.... .+... .+. .+.++++.+.+.+-++.-+++|+ |+-|-.
T Consensus 339 H~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~R~ 403 (726)
T PRK05402 339 HFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGLRV 403 (726)
T ss_pred CCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEEEE
Confidence 54221 11110 011 23468888888888888888885 554443
No 91
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=45.09 E-value=1.2e+02 Score=31.22 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCCeeE--ecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCC-----cHHHHhh---
Q 010588 89 PEDVQLMKDMGMDAYR--FSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDL-----PQALDDK--- 158 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R--~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~-----P~wl~~~--- 158 (506)
.+-++.+++.++..=- +.+.|.. ..+.-.+|++-+---.++|+.|+++|++.++.+.-+-. |...+..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~ 104 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMD--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKG 104 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhC--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCC
Confidence 4445666666665333 3334432 11122445544555678999999999997776543321 2221110
Q ss_pred ----------------cC-----CCCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCce
Q 010588 159 ----------------YK-----GWLDRQIINDFATYAETCFQKFGDRVKHWITFNEPHT 197 (506)
Q Consensus 159 ----------------~g-----gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 197 (506)
.| -|+||+.++.|.+..+.+....|- --+|+=+|||..
T Consensus 105 ~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~ 163 (317)
T cd06600 105 KFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSD 163 (317)
T ss_pred EEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCcc
Confidence 01 278899999998888877655553 246888999864
No 92
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=44.93 E-value=1.1e+02 Score=31.88 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=54.7
Q ss_pred HHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHH
Q 010588 95 MKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATY 174 (506)
Q Consensus 95 mk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~y 174 (506)
..+.|+..+|+. +|++-.. -+..+.+++.++++|+..=++.+|-.++.-+.++||+-+....++.-.++
T Consensus 97 a~~~G~~~iRIN----------PGNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 97 AAEAGADALRIN----------PGNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHHhCCCEEEEC----------CCCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 347799999764 3555320 35689999999999999999999999999999999764445555665666
Q ss_pred HHHH
Q 010588 175 AETC 178 (506)
Q Consensus 175 a~~~ 178 (506)
++.+
T Consensus 166 ~~~l 169 (360)
T PRK00366 166 AKIL 169 (360)
T ss_pred HHHH
Confidence 6554
No 93
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.84 E-value=83 Score=31.47 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhH
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQII 168 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~ 168 (506)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+... ...
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------CCH
Confidence 5899999999999999987332 2677899999999999999999876332 234
Q ss_pred HHHHHHHHHHHH
Q 010588 169 NDFATYAETCFQ 180 (506)
Q Consensus 169 ~~f~~ya~~~~~ 180 (506)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 567777777654
No 94
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=44.70 E-value=85 Score=32.56 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=63.1
Q ss_pred cHHHHHHHHHcCCCeeE--ecccccccccCCCCCCChHHHHHH--HHHHHHHHHcCCccEEEecCCCCc--------HHH
Q 010588 88 YPEDVQLMKDMGMDAYR--FSIAWSRIFPNGTGQINQAGVDHY--NKLIDALLAKGIEPYVTLYHWDLP--------QAL 155 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R--~si~W~ri~P~g~g~~n~~~~~~y--~~~i~~l~~~gI~p~vtl~h~~~P--------~wl 155 (506)
.++-++.+++.|+..== +.+.|..- .++-.+|++-+--- +++|+.|++.|++.++.+.-+-.+ .+-
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~ 103 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDR--RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYD 103 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccC--ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHH
Confidence 34555666666665333 33344321 11123333333334 889999999999988876544333 111
Q ss_pred Hh--h-----------c------C-----CCCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCce
Q 010588 156 DD--K-----------Y------K-----GWLDRQIINDFATYAETCFQKFGDRVKHWITFNEPHT 197 (506)
Q Consensus 156 ~~--~-----------~------g-----gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 197 (506)
+. + + | -++||+.++.|.+..+.+...+|- -.+|+=.|||..
T Consensus 104 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 104 RGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 10 0 0 1 277899999998888777766653 356888999863
No 95
>PRK05660 HemN family oxidoreductase; Provisional
Probab=44.48 E-value=1.1e+02 Score=32.20 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQ 166 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~ 166 (506)
++.++.|+++|++.+.+|+ +=+ .+...=....+ .+-..+.|+.+++.|+.++-.-.-+.+|. +
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~---~~~~~~ai~~~~~~G~~~v~~dli~Glpg------------q 171 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHG---PDEAKRAAKLAQGLGLRSFNLDLMHGLPD------------Q 171 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCeEEEEeecCCCC------------C
Confidence 5899999999999888887 443 23322112234 45567889999999998753323445663 3
Q ss_pred hHHHHHHHHHHHHHHhCCceeEEEeecCCcee
Q 010588 167 IINDFATYAETCFQKFGDRVKHWITFNEPHTF 198 (506)
Q Consensus 167 ~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 198 (506)
+.+.+.+-.+.+.+.=-+++..+...=||+..
T Consensus 172 t~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~ 203 (378)
T PRK05660 172 SLEEALDDLRQAIALNPPHLSWYQLTIEPNTL 203 (378)
T ss_pred CHHHHHHHHHHHHhcCCCeEEeeccEeccCCc
Confidence 45566666666666556788877777777644
No 96
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=44.43 E-value=39 Score=33.77 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecC
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYH 148 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h 148 (506)
.+|++.+.+.|++.+|+.++=|...-.. .+.=-++.++...+++..+++.|+++.+++-.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 6799999999999999988544432221 12223566889999999999999999998853
No 97
>PLN02784 alpha-amylase
Probab=44.25 E-value=42 Score=39.15 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=47.9
Q ss_pred ccccccHHHHHHHHHcCCCeeEecccccccccCCCCC-----CChH--HHHHHHHHHHHHHHcCCccEEE--ecC
Q 010588 83 DQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQ-----INQA--GVDHYNKLIDALLAKGIEPYVT--LYH 148 (506)
Q Consensus 83 d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~-----~n~~--~~~~y~~~i~~l~~~gI~p~vt--l~h 148 (506)
.+|....+.+.-+++||++++=++=.-....+.|-.. +|.+ ..+=++++|++|+++||++|+. +.|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 4788899999999999999998876544444443111 1111 2345899999999999999997 445
No 98
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.15 E-value=79 Score=33.07 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=61.0
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecC-CCCcHHHHhhcCCCCCh
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYH-WDLPQALDDKYKGWLDR 165 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h-~~~P~wl~~~~ggw~~~ 165 (506)
=.+|++.+.+.|+..+.+.++=|...-.. -+.=-++.++.+.++|+.++++|+++.+++.. |..|. .|..+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~- 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP- 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC-
Confidence 58999999999999999998655554432 22334778999999999999999998877764 55552 33333
Q ss_pred hhHHHHHHHHHHHHH
Q 010588 166 QIINDFATYAETCFQ 180 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~ 180 (506)
++.+.++++.+.+
T Consensus 196 --~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 --PSKVAYVAKELYD 208 (347)
T ss_pred --HHHHHHHHHHHHH
Confidence 5567777777654
No 99
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.78 E-value=87 Score=33.97 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=40.4
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP 152 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P 152 (506)
.++|++.+.+.|++.+|+.++-+.+. | ....|+.++++|+++.+++..-+-|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~-------n------~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR-------N------LETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH-------H------HHHHHHHHHHcCCeEEEEEEeecCC
Confidence 36677999999999999998654431 2 5668999999999988877765555
No 100
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=43.73 E-value=85 Score=31.82 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecC-CCCcHHHHhhcCCCCC
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYH-WDLPQALDDKYKGWLD 164 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h-~~~P~wl~~~~ggw~~ 164 (506)
.-.+|+++..+.|++.+++.++=|...-.. -+.=-++.++-..++|+.++++|+++..++.. |..| +.|..+
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~~ 153 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEVP 153 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCCC
Confidence 358999999999999999998554432221 22234567888999999999999999887764 4455 234333
Q ss_pred hhhHHHHHHHHHHHHHH
Q 010588 165 RQIINDFATYAETCFQK 181 (506)
Q Consensus 165 ~~~~~~f~~ya~~~~~~ 181 (506)
.+.+.++++.+.+.
T Consensus 154 ---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 154 ---PEAVADVAERLFAL 167 (287)
T ss_pred ---HHHHHHHHHHHHHc
Confidence 56677777777653
No 101
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=43.60 E-value=3.8e+02 Score=27.52 Aligned_cols=145 Identities=18% Similarity=0.246 Sum_probs=80.6
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcH-----HH----------------Hhh---c-CCCC-
Q 010588 110 SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQ-----AL----------------DDK---Y-KGWL- 163 (506)
Q Consensus 110 ~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~-----wl----------------~~~---~-ggw~- 163 (506)
++..|...+-++++-+..++++.+.++++|-..++=|.|...-. |. ... . .++.
T Consensus 61 ~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~ 140 (336)
T cd02932 61 GRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPT 140 (336)
T ss_pred cCCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCC
Confidence 34445434567888999999999999999999999999953210 00 000 0 0111
Q ss_pred ----C----hhhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeecccccccc-CCCC--cchhhhhhhcCCCCCChHHH
Q 010588 164 ----D----RQIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQ-APGR--CSILLHLFCRAGNSATEPYI 232 (506)
Q Consensus 164 ----~----~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~~~ 232 (506)
+ .++++.|++=|+.+.+.=-|.|+ +.+-+||+...| -|.. +.+. +|-+
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVe---------i~~~~gyLl~qFlsp~~N~R~D~------yGgs------ 199 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAVEAGFDVIE---------IHAAHGYLLHQFLSPLSNKRTDE------YGGS------ 199 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEE---------EccccccHHHHhcCCccCCCCcc------cCCC------
Confidence 1 45678888877777665345555 456667765543 3421 1110 0111
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCceeeeCCCCHHH
Q 010588 233 VAHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVIWYESASNSTED 278 (506)
Q Consensus 233 ~~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D 278 (506)
.-|-+.--...++.+|+.. .++..|++-++...+.+...+.++
T Consensus 200 -l~nr~rf~~eiv~aIR~~v--G~d~~v~vri~~~~~~~~g~~~~e 242 (336)
T cd02932 200 -LENRMRFLLEVVDAVRAVW--PEDKPLFVRISATDWVEGGWDLED 242 (336)
T ss_pred -HHHHhHHHHHHHHHHHHHc--CCCceEEEEEcccccCCCCCCHHH
Confidence 1133333345566667653 345678888776443333233444
No 102
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=43.48 E-value=18 Score=27.91 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=31.7
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCC
Q 010588 110 SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWD 150 (506)
Q Consensus 110 ~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~ 150 (506)
+++.|+ ++.=.+++++...+++..|.++|| +.+.|++-+
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 678888 455668899999999999999999 677766543
No 103
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=43.28 E-value=99 Score=33.38 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=51.5
Q ss_pred cHHHHHHHHHcCCCeeEecc-cccc-cccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCCh
Q 010588 88 YPEDVQLMKDMGMDAYRFSI-AWSR-IFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si-~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
=++.+++|+++|++.+.+++ +=+. +.-.=....+ .+-..+.|+.|++.||..+..-.-+.+|.
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli~GlPg------------ 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQP---FEFTFALVEAARELGFTSINIDLIYGLPK------------ 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCcEEEEEEccCCC------------
Confidence 37889999999999888887 4432 2222112334 55578899999999995443333445552
Q ss_pred hhHHHHHHHHHHHHHHhCCcee
Q 010588 166 QIINDFATYAETCFQKFGDRVK 187 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~ 187 (506)
++.+.+.+-.+.+.+.=-+++.
T Consensus 215 qt~e~~~~~l~~~~~l~~~~i~ 236 (453)
T PRK09249 215 QTPESFARTLEKVLELRPDRLA 236 (453)
T ss_pred CCHHHHHHHHHHHHhcCCCEEE
Confidence 3345555555555543223444
No 104
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=42.98 E-value=1.5e+02 Score=26.93 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHcCCCeeEecc-cccccccC-CCCCCChHHHHHHHHHHHHHHHcC-CccEEE
Q 010588 87 RYPEDVQLMKDMGMDAYRFSI-AWSRIFPN-GTGQINQAGVDHYNKLIDALLAKG-IEPYVT 145 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si-~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~g-I~p~vt 145 (506)
.-++.++.|+++|++.+.+|+ +++.-.-+ -....+ ++.+.+.|+.++++| +.+.+.
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~ 156 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTD 156 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEe
Confidence 347889999999999999999 46432211 112233 577899999999999 554433
No 105
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=42.77 E-value=47 Score=36.18 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=43.5
Q ss_pred ccccccHHHHHHHHHcCCCeeEecccccc--------cccCCC---------CCCChH--HHHHHHHHHHHHHHcCCccE
Q 010588 83 DQYHRYPEDVQLMKDMGMDAYRFSIAWSR--------IFPNGT---------GQINQA--GVDHYNKLIDALLAKGIEPY 143 (506)
Q Consensus 83 d~y~~~~~Di~lmk~lG~~~~R~si~W~r--------i~P~g~---------g~~n~~--~~~~y~~~i~~l~~~gI~p~ 143 (506)
+.|....+-++-+++||++++=++=...- -.|.-- |.+|.. ..+=+++||++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34555567789999999999987763332 222200 011211 23448999999999999999
Q ss_pred EEe--cCC
Q 010588 144 VTL--YHW 149 (506)
Q Consensus 144 vtl--~h~ 149 (506)
+.+ .|-
T Consensus 99 ~D~V~NH~ 106 (479)
T PRK09441 99 ADVVLNHK 106 (479)
T ss_pred EEECcccc
Confidence 974 464
No 106
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=42.67 E-value=71 Score=33.48 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhh
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQI 167 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~ 167 (506)
.+|++.+.+.|++.+|+.++-|.+.-.. -+.=-++.++...+.|+.++++|+++.++... ++..+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~~--- 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRAD--- 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCCC---
Confidence 8999999999999999999776543321 11223566888999999999999997765432 23333
Q ss_pred HHHHHHHHHHHHHHhC
Q 010588 168 INDFATYAETCFQKFG 183 (506)
Q Consensus 168 ~~~f~~ya~~~~~~~~ 183 (506)
.+.+.++++.+.+ .|
T Consensus 141 ~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 PDFLVELAEVAAE-AG 155 (365)
T ss_pred HHHHHHHHHHHHH-cC
Confidence 4556666666543 44
No 107
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=41.94 E-value=1.4e+02 Score=33.22 Aligned_cols=92 Identities=17% Similarity=0.330 Sum_probs=55.7
Q ss_pred ccccHHHHHHHHHcCCCeeEeccc--------c-------cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe--c
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSIA--------W-------SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL--Y 147 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si~--------W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl--~ 147 (506)
+.-..+-+.-+|+||++++-+.=- | -.+.|. -|. .+=+++||++|.++||++|+.+ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G~-----~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YGG-----PDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 444556689999999999876431 2 112222 121 3458999999999999999974 3
Q ss_pred CCC---------CcHHHHhh-cCCC------CCh---hhHHHHHHHHHHHHHHhC
Q 010588 148 HWD---------LPQALDDK-YKGW------LDR---QIINDFATYAETCFQKFG 183 (506)
Q Consensus 148 h~~---------~P~wl~~~-~ggw------~~~---~~~~~f~~ya~~~~~~~~ 183 (506)
|.. .| |+... ..+| .++ ++.+.+.+-++.-+++|+
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 532 12 33211 1233 234 666666666666666664
No 108
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.73 E-value=87 Score=32.42 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=63.8
Q ss_pred cHHHHHHHHHcCCCeeEecc--cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCC-----cHHHHhh--
Q 010588 88 YPEDVQLMKDMGMDAYRFSI--AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDL-----PQALDDK-- 158 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~-----P~wl~~~-- 158 (506)
..+-++.+++.||..=-+-| .|.. -.+.-.+|++-+-=-+++|+.|++.|++.++.+.-+.. |..-+-.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~ 103 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTD--GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDK 103 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhC--CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHC
Confidence 34455666666665433333 3321 00011233333333477999999999998877664432 2211100
Q ss_pred -----------c------C-----CCCChhhHHHHHHHHHHHHHHhCC-ceeEEEeecCCceee
Q 010588 159 -----------Y------K-----GWLDRQIINDFATYAETCFQKFGD-RVKHWITFNEPHTFT 199 (506)
Q Consensus 159 -----------~------g-----gw~~~~~~~~f~~ya~~~~~~~~~-~v~~w~t~NEp~~~~ 199 (506)
+ | -+.||+.++.|.+..+.+....+. -...|+=.|||.++.
T Consensus 104 g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 104 GYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred CeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 0 1 277899999999998877654332 346799999998653
No 109
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=41.72 E-value=91 Score=34.01 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=43.6
Q ss_pred cccccHHH-----HHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 010588 84 QYHRYPED-----VQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP 152 (506)
Q Consensus 84 ~y~~~~~D-----i~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P 152 (506)
-|..|.+| +++.++.|++.+|+.-... + ++-....|+.+++.|....+++.+-+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~ln----------d---~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDALN----------D---PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccCC----------C---HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 37778888 9999999999999876332 2 4446778888888888888888776666
No 110
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=41.68 E-value=83 Score=33.21 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
++|++.+.+.|++.++++++-|.+.-.. -+.=-++.++-..+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 8899999999999999999666553221 122346778889999999999999988874
No 111
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.52 E-value=1.2e+02 Score=31.26 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=62.3
Q ss_pred HHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHH
Q 010588 92 VQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDF 171 (506)
Q Consensus 92 i~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f 171 (506)
.+.+|++|.+++.|=+=|. |+++-.+|..-.++.+++.++|++++|-=++=+..++.+.- +. .+.++...-
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~--d~----~~~~yak~k 181 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIA--DN----GSVEYAKVK 181 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCccc--cc----ccHHHHhhC
Confidence 5889999999999999886 55434588888999999999999999998888877665431 11 112233333
Q ss_pred HHHHHHHHHHhCC---ceeEEE
Q 010588 172 ATYAETCFQKFGD---RVKHWI 190 (506)
Q Consensus 172 ~~ya~~~~~~~~~---~v~~w~ 190 (506)
-+.+-..++.|++ .|+.|-
T Consensus 182 P~~V~~a~kefs~~~~gvDVlK 203 (324)
T PRK12399 182 PHKVNEAMKVFSKPRFGVDVLK 203 (324)
T ss_pred hHHHHHHHHHhccCCCCCcEEE
Confidence 3334445666655 455443
No 112
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.44 E-value=1.9e+02 Score=29.39 Aligned_cols=136 Identities=21% Similarity=0.207 Sum_probs=76.5
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCC---cHHH----------HhhcCC-----CC---ChhhHH
Q 010588 111 RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDL---PQAL----------DDKYKG-----WL---DRQIIN 169 (506)
Q Consensus 111 ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~---P~wl----------~~~~gg-----w~---~~~~~~ 169 (506)
+..|...|-++++-+..++++.+.++++|-..++=|.|... |... ...... -+ =.++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~ 141 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIE 141 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 33444346789999999999999999999999999998431 1100 000000 00 135678
Q ss_pred HHHHHHHHHHHHhCCceeEEEeecCCceeeecccccccc-CCC--CcchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHH
Q 010588 170 DFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQ-APG--RCSILLHLFCRAGNSATEPYIVAHNALLTHAKVAD 246 (506)
Q Consensus 170 ~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~-~Pg--~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~ 246 (506)
.|++.|+.+.+.=-|-|. +.+-+||+...| .|. .+.+. .|-+ . -|-+.--...++
T Consensus 142 ~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d~------yGgs----~---enr~r~~~eii~ 199 (327)
T cd02803 142 DFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTDE------YGGS----L---ENRARFLLEIVA 199 (327)
T ss_pred HHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCcc------cCCC----H---HHHHHHHHHHHH
Confidence 888888887664234444 556677776543 342 11111 1111 1 122222235566
Q ss_pred HHHHhhccCCCCcEEEEecCceee
Q 010588 247 IYRKKYKAKQGGSLGIAFDVIWYE 270 (506)
Q Consensus 247 ~~r~~~~~~~~gkIGi~~~~~~~~ 270 (506)
.+|+.. .++-.|++-++.....
T Consensus 200 avr~~~--g~d~~i~vris~~~~~ 221 (327)
T cd02803 200 AVREAV--GPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHc--CCCceEEEEechhccC
Confidence 666653 2455788887765433
No 113
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=41.42 E-value=1.4e+02 Score=31.75 Aligned_cols=90 Identities=16% Similarity=0.323 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCCh
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
..|++||++.+++||+.|=+.|- . ..... .+....+++.+.+.|.+.++++ |+... +.|...
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~-~d~~~---~~~l~~a~~AA~~~gFKlf~Sf---D~~~~-----~~~~~~ 78 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------S-SDSWQ---PDQLADAYQAAEAVGFKLFFSF---DMNSL-----GPWSQD 78 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------c-CCccc---HHHHHHHHHHHHhcCCEEEEEe---cccCC-----CCCCHH
Confidence 35899999999999999999886 1 12344 4557888899999998887776 44321 223332
Q ss_pred hhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeec
Q 010588 166 QIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQ 201 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 201 (506)
+ ...+++.|+.+-.+...-+-|-+-.+.
T Consensus 79 ~--------~~~~i~~y~~~pa~~~~~Gkp~VStF~ 106 (386)
T PF03659_consen 79 E--------LIALIKKYAGHPAYFRYDGKPVVSTFE 106 (386)
T ss_pred H--------HHHHHHHHcCChhHEeECCeEEEEEee
Confidence 3 333455566655555543444444443
No 114
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.79 E-value=1.3e+02 Score=31.19 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHH
Q 010588 91 DVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIIND 170 (506)
Q Consensus 91 Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~ 170 (506)
+.+.+|++|.+++.|=+=|. |+++-.+|..-.++.+++.++|++++|-=++=+..++.+.- +. .+++....
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~--d~----~~~eyak~ 182 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS--DN----NSAAYAKL 182 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc--cc----ccHHHHhh
Confidence 56889999999999999886 55434688888999999999999999999998888764431 11 12333333
Q ss_pred HHHHHHHHHHHhCC---ceeEEE
Q 010588 171 FATYAETCFQKFGD---RVKHWI 190 (506)
Q Consensus 171 f~~ya~~~~~~~~~---~v~~w~ 190 (506)
--+.+-..++.|++ .|+.|-
T Consensus 183 kP~~V~~amkefs~~~~gvDVlK 205 (329)
T PRK04161 183 KPHKVNGAMKVFSDKRFGVDVLK 205 (329)
T ss_pred ChHHHHHHHHHhccCCCCCcEEE
Confidence 33335555666665 355443
No 115
>PRK07094 biotin synthase; Provisional
Probab=40.79 E-value=46 Score=34.01 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHcCCCeeEecc-cc-cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEE
Q 010588 87 RYPEDVQLMKDMGMDAYRFSI-AW-SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVT 145 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si-~W-~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vt 145 (506)
.-+++++.|+++|++.+-+++ +- +++...=....+ ++-+.+.|+.+++.||.+..+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecce
Confidence 347999999999999999988 44 344443111234 566889999999999975433
No 116
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.18 E-value=1.2e+02 Score=30.69 Aligned_cols=92 Identities=11% Similarity=0.156 Sum_probs=60.7
Q ss_pred cccccHHH-HHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCC----cHHHHhh
Q 010588 84 QYHRYPED-VQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDL----PQALDDK 158 (506)
Q Consensus 84 ~y~~~~~D-i~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~----P~wl~~~ 158 (506)
||--|.++ .+.+++-+-+.-.++..|-.+-|+| .+.. ....++++.++++|+++++++..++- +.-+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~- 80 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG--TLTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA- 80 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC--CCCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH-
Confidence 34444443 6777777777777888999998875 3332 22468999999999999999977641 111111
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHhC
Q 010588 159 YKGWLDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 159 ~ggw~~~~~~~~f~~ya~~~~~~~~ 183 (506)
-..+++..+.|++=+..+++++|
T Consensus 81 --~l~~~~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 81 --VLSNPEARQRLINNILALAKKYG 103 (313)
T ss_pred --HhcCHHHHHHHHHHHHHHHHHhC
Confidence 12356667777777777777764
No 117
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=39.45 E-value=54 Score=35.55 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCeeEecc-cccc-cccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWSR-IFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
++.+++|+++|++.+-+++ +-+. +...=.-..+ .+.+.+.++.|+++||.+.+.+-
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I 344 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFI 344 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEE
Confidence 5678999999999999998 5543 2222111245 55678999999999999776653
No 118
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=38.91 E-value=1.6e+02 Score=30.54 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCC-CChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQ-INQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~-~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.++.|+++|+|.+.+++ +-+ .+... -|+ .+ .+-..+.|+.+++.|+..+-.-.=+.+|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-lgR~~~---~~~~~~ai~~lr~~g~~~v~iDli~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-LGRIHS---QKQIIKAIENAKKAGFENISIDLIYDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCEEEEEeecCCCC------------
Confidence 6899999999999888888 664 33333 232 44 55578899999999998653222345552
Q ss_pred hhHHHHHHHHHHHHHHhCCceeEEEeecCCc
Q 010588 166 QIINDFATYAETCFQKFGDRVKHWITFNEPH 196 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 196 (506)
++.+.|.+-.+.+.+.=.++|......=||+
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 3445566655555543345555544444554
No 119
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=38.84 E-value=1e+02 Score=32.02 Aligned_cols=96 Identities=23% Similarity=0.476 Sum_probs=54.1
Q ss_pred ccccHHHHHHHHHcCCCeeE---------------ec---------------ccccccccC-C-CCCCC----hHHHHHH
Q 010588 85 YHRYPEDVQLMKDMGMDAYR---------------FS---------------IAWSRIFPN-G-TGQIN----QAGVDHY 128 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R---------------~s---------------i~W~ri~P~-g-~g~~n----~~~~~~y 128 (506)
|+||++.|+-|+=-|||..= |+ ..|.|+--- | +|... ++-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67899999999999999542 11 134444322 1 23332 2234556
Q ss_pred HHHHHHHHHcCCccEEEecCCCCcHHHHhhc--------CCC--------CChhhHHHHHHHHHHHHHH
Q 010588 129 NKLIDALLAKGIEPYVTLYHWDLPQALDDKY--------KGW--------LDRQIINDFATYAETCFQK 181 (506)
Q Consensus 129 ~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~--------ggw--------~~~~~~~~f~~ya~~~~~~ 181 (506)
+++++.+++-||+|++--+---.|..|.+++ |.| ++| .-+.|.+.++...++
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~ 165 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEE 165 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHH
Confidence 8899999999999999998888999888764 223 233 226777776665554
No 120
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=37.48 E-value=70 Score=35.49 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHHcCCCeeEeccccc--------------ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 83 DQYHRYPEDVQLMKDMGMDAYRFSIAWS--------------RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 83 d~y~~~~~Di~lmk~lG~~~~R~si~W~--------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
.-+.-..+-++-+++||++++=++=-.. +|.|. -| ..+=++++|++|+++||++|+.+
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~-~G-----t~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPL-FG-----TMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 3344566778999999999987654332 22222 11 23458999999999999999985
No 121
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=37.06 E-value=2e+02 Score=28.74 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=49.4
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhh
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQI 167 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~ 167 (506)
-++|+++..+.|++.+|+++.-+. ++...+.++.++++|+++.+++.-.+- + +..
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~~---------~---~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTGS---------P---VHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecCC---------C---CCC
Confidence 488999999999999999875443 456788999999999998876632111 1 223
Q ss_pred HHHHHHHHHHHHHH
Q 010588 168 INDFATYAETCFQK 181 (506)
Q Consensus 168 ~~~f~~ya~~~~~~ 181 (506)
.+.+.++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (275)
T cd07937 148 LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHHHHc
Confidence 45567777776543
No 122
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=36.44 E-value=83 Score=35.02 Aligned_cols=62 Identities=13% Similarity=0.348 Sum_probs=41.5
Q ss_pred ccccccHHHHHHHHHcCCCeeEecccccccccCCCCCCCh----------HHHHHHHHHHHHHHHcCCccEEEe
Q 010588 83 DQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQ----------AGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 83 d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~----------~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
.-+.-..+.++-+++||++++=++=-+.. |..+..|+. -..+=+++||++++++||++|+.+
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 33455668899999999999977653321 110111110 123458999999999999999975
No 123
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=36.32 E-value=82 Score=30.74 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCce
Q 010588 128 YNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDRV 186 (506)
Q Consensus 128 y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v 186 (506)
.++.++.+++.|+.-+=--.+|.... ...-++-.+....+.+.+..+.| +.+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~~--~~~~~~~~~~~~~~~ld~~v~~a-~~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAYQ--EPNPGYNYDETYLARLDRIVDAA-QAYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTSTS--TTSTTTSBTHHHHHHHHHHHHHH-HHTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHhc--CCCCCccccHHHHHHHHHHHHHH-HhCCCeE
Confidence 58899999999999766655652221 11112234566667777766666 3445444
No 124
>PRK05474 xylose isomerase; Provisional
Probab=36.09 E-value=1.6e+02 Score=31.62 Aligned_cols=69 Identities=13% Similarity=0.287 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHH----HHHcCCcc-EEEecCCCCcHHHHhhcCCCCCh
Q 010588 91 DVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDA----LLAKGIEP-YVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 91 Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~----l~~~gI~p-~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
=++.|.+||+..|-|- =..|.|+|. .. .+..+-++++++. +.+.||+. ++|..-|..|.... |+++||
T Consensus 84 afe~~~kLg~~~~~FH--D~D~~peg~-s~-~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tnp 156 (437)
T PRK05474 84 AFEFFTKLGVPYYCFH--DVDVAPEGA-SL-KEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAATNP 156 (437)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCCC-CH-HHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCCCC
Confidence 3667999999998764 346778852 22 2333344555544 55678885 55677899998763 999997
Q ss_pred h
Q 010588 166 Q 166 (506)
Q Consensus 166 ~ 166 (506)
+
T Consensus 157 d 157 (437)
T PRK05474 157 D 157 (437)
T ss_pred C
Confidence 5
No 125
>PRK03705 glycogen debranching enzyme; Provisional
Probab=35.99 E-value=71 Score=36.43 Aligned_cols=54 Identities=20% Similarity=0.423 Sum_probs=36.2
Q ss_pred HHHHHHcCCCeeEecc--c---------------c-------cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 92 VQLMKDMGMDAYRFSI--A---------------W-------SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 92 i~lmk~lG~~~~R~si--~---------------W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
|+-+|+||++++-+.= + | -.++|. -|.-....++=+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~-ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA-YASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc-cCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 8899999999987642 1 1 122222 121111235568999999999999999974
No 126
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=35.93 E-value=64 Score=35.71 Aligned_cols=55 Identities=22% Similarity=0.454 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHcCCCeeEecccc--------------cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAW--------------SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W--------------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
.-..+-++-+++||++++=++=-. -+|.|. -| ..+=++++|++++++||++|+.+
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~-~G-----t~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPE-FG-----TIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChh-hC-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 335666889999999998665322 223333 11 13458999999999999999974
No 127
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=35.79 E-value=2.2e+02 Score=32.10 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=61.6
Q ss_pred ccccHHHH-HHHHHcCCCeeEec-ccccc--------------cccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec-
Q 010588 85 YHRYPEDV-QLMKDMGMDAYRFS-IAWSR--------------IFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY- 147 (506)
Q Consensus 85 y~~~~~Di-~lmk~lG~~~~R~s-i~W~r--------------i~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~- 147 (506)
|.-..+.+ .-+|+||++++-+. |..+. +.|. -| + .+=++++|++|.++||++|+.+-
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~-~G--t---~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSR-FG--T---PDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccc-cC--C---HHHHHHHHHHHHHCCCEEEEEecc
Confidence 33344564 88999999999873 32221 1111 11 1 33479999999999999999754
Q ss_pred -CCCC-----------cHHHHhh-----cCC-------CCChhhHHHHHHHHHHHHHHhCCceeEEEe
Q 010588 148 -HWDL-----------PQALDDK-----YKG-------WLDRQIINDFATYAETCFQKFGDRVKHWIT 191 (506)
Q Consensus 148 -h~~~-----------P~wl~~~-----~gg-------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 191 (506)
|... |.+.... +.. +.++++.+.+.+-++.-+++|+ |+-|-.
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~--iDG~R~ 294 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH--IDGLRV 294 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC--CcEEEE
Confidence 5431 1121100 011 2468888999999999999985 444433
No 128
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.71 E-value=3.6e+02 Score=26.64 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
.+|++..++.|++.+|+..+-+.+ .-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998866643 2247788999999999888874
No 129
>PLN02389 biotin synthase
Probab=35.68 E-value=98 Score=32.76 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHcCCCeeEecccccc-cccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIAWSR-IFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
.-+|.++.||++|++.|-.+++=++ +.|+-...-+ ++..-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s---~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRS---YDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCC---HHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999884233 5554211224 7778899999999999876553
No 130
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=35.50 E-value=1.6e+02 Score=31.51 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccC-CCCCCChHHHHHHHHHHHHHHHcCCccE-EEecCCCCc
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPN-GTGQINQAGVDHYNKLIDALLAKGIEPY-VTLYHWDLP 152 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gI~p~-vtl~h~~~P 152 (506)
++.+++|+++|++.+.+++ +=+ ++... +. ..+ .+-..+.|+.|++.|+..+ +.| =+++|
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R-~~~---~~~~~~ai~~l~~~g~~~i~~dl-I~GlP 203 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHR-PQK---RADVHQALEWIRAAGFPILNIDL-IYGIP 203 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCC-CCC---HHHHHHHHHHHHHcCCCeEEEEe-ecCCC
Confidence 6889999999999888888 552 33333 22 234 5567899999999999864 333 34555
No 131
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.33 E-value=1.4e+02 Score=33.65 Aligned_cols=93 Identities=18% Similarity=0.140 Sum_probs=58.8
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc----HHHHhh-----
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP----QALDDK----- 158 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P----~wl~~~----- 158 (506)
.++|++++.+.|++.+|+..+.+.+ +-....++.++++|+.+.+++.+..-| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4566899999999999999866543 225777788889999888887665555 222110
Q ss_pred -----------cCCCCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCce
Q 010588 159 -----------YKGWLDRQIINDFATYAETCFQKFGDRVKHWITFNEPHT 197 (506)
Q Consensus 159 -----------~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 197 (506)
-.|...|.. ..+..+.+-++++ ..-...+.|-..+
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~~---v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPKA---AYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 235555544 3444444455554 2234666666654
No 132
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=34.93 E-value=38 Score=32.51 Aligned_cols=54 Identities=22% Similarity=0.451 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHcCCCeeEecc-c-c-----------------cccccCCCCCCChHHHHHHHHHHHHHHHcCCccE
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSI-A-W-----------------SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPY 143 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si-~-W-----------------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~ 143 (506)
.-.-+.=++||++||.+++.|-= . = =.+||.| -+| ++-+.+++..|+++|++-+
T Consensus 134 ~V~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTG--GId---l~N~~~I~~i~l~aGv~~v 206 (218)
T PF07071_consen 134 IVPVETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTG--GID---LDNFEEIVKICLDAGVEKV 206 (218)
T ss_dssp EEEHHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBS--S-----TTTHHHHHHHHHHTT-S-B
T ss_pred cccHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcC--CcC---HHHHHHHHHHHHHcCCCee
Confidence 34557789999999999998632 1 0 1237874 477 6678888888888888754
No 133
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=34.27 E-value=1.5e+02 Score=31.97 Aligned_cols=76 Identities=16% Similarity=0.298 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCCCChHHHHHHHHHHHHHHHcCCccE-EEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPY-VTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~-vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.+++|+++|++.+.+++ +=+ ++...=....+ .+...+.++.|++.|++.+ +.| -+.+|.
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg------------ 214 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDL-IYGLPK------------ 214 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeE-EeeCCC------------
Confidence 7889999999999777777 443 22222112344 5667899999999999733 332 334552
Q ss_pred hhHHHHHHHHHHHHH
Q 010588 166 QIINDFATYAETCFQ 180 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~ 180 (506)
++.+.|.+-.+.+.+
T Consensus 215 qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 QTKESFAKTLEKVAE 229 (455)
T ss_pred CCHHHHHHHHHHHHh
Confidence 344555555555544
No 134
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=33.73 E-value=1.5e+02 Score=29.85 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecC-CCCcHHHHhhcCCCCChh
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYH-WDLPQALDDKYKGWLDRQ 166 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h-~~~P~wl~~~~ggw~~~~ 166 (506)
.+|++...+.|++.+++.++=|...-.. -+.=-++.++...+.++.++++|+++.+++.. |..|. +|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~--- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV--- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC---
Confidence 7899999999999999998555432221 12223667888999999999999999888773 55552 3333
Q ss_pred hHHHHHHHHHHHHH
Q 010588 167 IINDFATYAETCFQ 180 (506)
Q Consensus 167 ~~~~f~~ya~~~~~ 180 (506)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 35667777777654
No 135
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.72 E-value=1.7e+02 Score=30.27 Aligned_cols=105 Identities=11% Similarity=0.153 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCe--eEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCC-----CCcHHHHhh---
Q 010588 89 PEDVQLMKDMGMDA--YRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHW-----DLPQALDDK--- 158 (506)
Q Consensus 89 ~~Di~lmk~lG~~~--~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~-----~~P~wl~~~--- 158 (506)
.+-++.+++.||.. +=+.+.|..- .+.-.+|++-+-=-+++|+.|+++|++.++-+.-+ +.|..-+..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~--~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g 104 (339)
T cd06604 27 REIADEFRERDIPCDAIYLDIDYMDG--YRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEND 104 (339)
T ss_pred HHHHHHHHHhCCCcceEEECchhhCC--CCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCC
Confidence 44555556656543 2233344321 11112333222224789999999999987654322 122221110
Q ss_pred ------------------cC---CCCChhhHHHHHHHHHHHHHHhCCcee-EEEeecCCcee
Q 010588 159 ------------------YK---GWLDRQIINDFATYAETCFQKFGDRVK-HWITFNEPHTF 198 (506)
Q Consensus 159 ------------------~g---gw~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~~~ 198 (506)
.+ -|+||+.++.|.+.-+.+. .. .|+ +|+=.|||..+
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~--Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 105 YFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DL--GVDGIWNDMNEPAVF 163 (339)
T ss_pred eEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hC--CCceEeecCCCcccc
Confidence 01 3778999999887766654 23 344 58889999865
No 136
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=33.41 E-value=2.2e+02 Score=30.23 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCccccccHHHHHHHHHc-CCCeeEecc--cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccE-EEecCCCCcHHHH
Q 010588 81 AVDQYHRYPEDVQLMKDM-GMDAYRFSI--AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPY-VTLYHWDLPQALD 156 (506)
Q Consensus 81 a~d~y~~~~~Di~lmk~l-G~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~-vtl~h~~~P~wl~ 156 (506)
+.+-.++ -+|++.++.+ ++. .++++ .|+ ...| +.++.+.++++||+.. ++...|..|.+
T Consensus 36 ~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~d-------~~~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~~-- 98 (378)
T TIGR02635 36 ARNVFEK-IEDAALVHRLTGIC-PTVALHIPWD-------RVED------YEELARYAEELGLKIGAINPNLFQDDDY-- 98 (378)
T ss_pred CCCHHHH-HHHHHHHHhhcCCC-CceeeccCCc-------cccC------HHHHHHHHHHcCCceeeeeCCccCCccc--
Confidence 3333333 6788888877 555 66666 451 1233 6788888999999987 77777767755
Q ss_pred hhcCCCCCh--hhHHHHHHHHHHHH---HHhCC
Q 010588 157 DKYKGWLDR--QIINDFATYAETCF---QKFGD 184 (506)
Q Consensus 157 ~~~ggw~~~--~~~~~f~~ya~~~~---~~~~~ 184 (506)
++|.+.|| ++...-.+++..|. +.+|.
T Consensus 99 -~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 99 -KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35888885 55555555555544 56665
No 137
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=33.41 E-value=1e+02 Score=31.35 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHHHHHHcCCc-cEE----------------EecCCCCcHHHHhhcCCCCCh-h-hHHHHHHHHHHHH
Q 010588 119 QINQAGVDHYNKLIDALLAKGIE-PYV----------------TLYHWDLPQALDDKYKGWLDR-Q-IINDFATYAETCF 179 (506)
Q Consensus 119 ~~n~~~~~~y~~~i~~l~~~gI~-p~v----------------tl~h~~~P~wl~~~~ggw~~~-~-~~~~f~~ya~~~~ 179 (506)
-|| .+-|.++++.+++.||+ |++ .++.-.+|.|+.++.....+. + ..+.=.+||...+
T Consensus 185 ~Fd---~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i 261 (296)
T PRK09432 185 FFD---VESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMV 261 (296)
T ss_pred ccc---hHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467 55688999999999965 332 345789999999887666442 2 2233445666666
Q ss_pred HHhCCc-e--eEEEeecCCcee
Q 010588 180 QKFGDR-V--KHWITFNEPHTF 198 (506)
Q Consensus 180 ~~~~~~-v--~~w~t~NEp~~~ 198 (506)
+++-+. | -+..|+|-+...
T Consensus 262 ~~L~~~gv~GvH~yt~n~~~~~ 283 (296)
T PRK09432 262 KILSREGVKDFHFYTLNRAELT 283 (296)
T ss_pred HHHHHCCCCEEEEecCCChHHH
Confidence 654332 2 244467776543
No 138
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=33.00 E-value=1.4e+02 Score=31.64 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHHHcCCCeeEeccccc---ccccCCCCCCChH----HHHHHHHHHHHHHHcCCccEE
Q 010588 92 VQLMKDMGMDAYRFSIAWS---RIFPNGTGQINQA----GVDHYNKLIDALLAKGIEPYV 144 (506)
Q Consensus 92 i~lmk~lG~~~~R~si~W~---ri~P~g~g~~n~~----~~~~y~~~i~~l~~~gI~p~v 144 (506)
++++|++|++.+=+--.=. .+.|+....+|.. .-+...++.++|+++||+.-+
T Consensus 87 a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 7999999999775321100 0122211111100 146689999999999999655
No 139
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=32.98 E-value=1.1e+02 Score=36.04 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=41.8
Q ss_pred ccccHHHHHHHHHcCCCeeEecc---------------cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSI---------------AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si---------------~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
+....+-+.-+++||++++=+|= .+.+|.|.- | +.+=+++++++++++||.+|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 34467888999999999886553 444555552 2 23458999999999999999975
No 140
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.68 E-value=1.1e+02 Score=30.11 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=46.2
Q ss_pred ecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 010588 105 FSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 105 ~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 183 (506)
+.++|..+-++|.-.... ....+..+++.++++|+++++.+..+....... -..+++.++.|++=+-..+++++
T Consensus 26 v~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 344666666664211210 123467889999999999999997765543221 12457777777776666666664
No 141
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=32.53 E-value=1.6e+02 Score=29.54 Aligned_cols=81 Identities=10% Similarity=-0.017 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhh
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQI 167 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~ 167 (506)
+.+++++++.|++.+|+.++=|...-.. -|.=.++.++...+.++.+++.|+++.++.-++ .+ +.. ..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~~---~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GYK---AN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cCC---CC
Confidence 3689999999999999988544332221 122236678899999999999999988876665 11 111 22
Q ss_pred HHHHHHHHHHHHH
Q 010588 168 INDFATYAETCFQ 180 (506)
Q Consensus 168 ~~~f~~ya~~~~~ 180 (506)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 4555666666654
No 142
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=32.32 E-value=3.5e+02 Score=25.09 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhCCc
Q 010588 168 INDFATYAETCFQKFGDR 185 (506)
Q Consensus 168 ~~~f~~ya~~~~~~~~~~ 185 (506)
.+....|++.+-++.|.+
T Consensus 102 ~~~~~~f~~~v~~~~G~~ 119 (184)
T cd06525 102 NDYVLRFIEEFEKLSGLK 119 (184)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 455555555555554443
No 143
>PRK06256 biotin synthase; Validated
Probab=32.23 E-value=69 Score=32.94 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHcCCCeeEecc-cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEE
Q 010588 87 RYPEDVQLMKDMGMDAYRFSI-AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVT 145 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si-~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vt 145 (506)
.-++.++.||++|++.+-+++ +=.++.+.=....+ ++-.-+.|+.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccC
Confidence 457889999999999999887 52334444211224 666788999999999975443
No 144
>PRK14705 glycogen branching enzyme; Provisional
Probab=30.76 E-value=2.1e+02 Score=35.18 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=57.2
Q ss_pred HHH-HHHHHHcCCCeeEecc--------cccccccCC----CCCCChHHHHHHHHHHHHHHHcCCccEEEec--CCCCcH
Q 010588 89 PED-VQLMKDMGMDAYRFSI--------AWSRIFPNG----TGQINQAGVDHYNKLIDALLAKGIEPYVTLY--HWDLPQ 153 (506)
Q Consensus 89 ~~D-i~lmk~lG~~~~R~si--------~W~ri~P~g----~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~--h~~~P~ 153 (506)
.+. |.-+|+||++++-+.= +|- -.|.+ +..|- ..+=++.+|++|.++||.+|+.+- |+..=.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryG--t~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~ 844 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFG--HPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS 844 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCcch
Confidence 344 5889999999987542 341 11211 01111 133479999999999999999753 542212
Q ss_pred HHHhhcC----------------C-------CCChhhHHHHHHHHHHHHHHhC
Q 010588 154 ALDDKYK----------------G-------WLDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 154 wl~~~~g----------------g-------w~~~~~~~~f~~ya~~~~~~~~ 183 (506)
|....+. . +.++++.+.+.+=|..-+++|+
T Consensus 845 ~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 845 WALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 2111110 1 3467888888899999999984
No 145
>PRK12677 xylose isomerase; Provisional
Probab=30.56 E-value=3.9e+02 Score=28.32 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=46.6
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccE-EEecCCCCcHHHHhhcCCCCCh
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPY-VTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~-vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
.+|-++.++++|+..+=+.. ..+.|-+ -..... -...+++-+.|.++||++. +|...+..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~-~~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG-ATDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC-CChhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 68889999999999886632 2344442 111111 1246788888999999965 55555666654 24888884
No 146
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.22 E-value=2.4e+02 Score=29.20 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec--CCCCcHHHH
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY--HWDLPQALD 156 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~--h~~~P~wl~ 156 (506)
.+|++.+.+.|++.+|+....+.. +-..+.|+.+++.|+++.+.+. |...|..+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~ 146 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLA 146 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHH
Confidence 689999999999999998754332 2247899999999999888774 444555443
No 147
>PRK09505 malS alpha-amylase; Reviewed
Probab=30.03 E-value=1.1e+02 Score=35.09 Aligned_cols=63 Identities=19% Similarity=0.395 Sum_probs=41.5
Q ss_pred cHHHHHHHHHcCCCeeEecccccccc-----------cC-C-CC-------CCChH--HHHHHHHHHHHHHHcCCccEEE
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIF-----------PN-G-TG-------QINQA--GVDHYNKLIDALLAKGIEPYVT 145 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~-----------P~-g-~g-------~~n~~--~~~~y~~~i~~l~~~gI~p~vt 145 (506)
..+-++-+++||++++=++=-...+. |. + -| .+|+. ..+=++++|++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999998875443321 10 0 00 11211 3455899999999999999997
Q ss_pred e--cCCC
Q 010588 146 L--YHWD 150 (506)
Q Consensus 146 l--~h~~ 150 (506)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 4 4544
No 148
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=30.03 E-value=1.8e+02 Score=30.22 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhH
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQII 168 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~ 168 (506)
..-|++|.+.|++-+=.|+ +.|++ -+...+..++++++.+.+.|+++||.+ -|.-|.. -||. ...+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S-~~~l 84 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNIS-LDNL 84 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCC-hHHH
Confidence 3447889999988766655 34443 234579999999999999999999998 7887764 2333 3345
Q ss_pred HHHHHH
Q 010588 169 NDFATY 174 (506)
Q Consensus 169 ~~f~~y 174 (506)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 555554
No 149
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=29.94 E-value=6.4e+02 Score=26.09 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=74.3
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHH----------HHhhcCC-----CCC---hhhHHHHHHHHHHHH
Q 010588 118 GQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQA----------LDDKYKG-----WLD---RQIINDFATYAETCF 179 (506)
Q Consensus 118 g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~w----------l~~~~gg-----w~~---~~~~~~f~~ya~~~~ 179 (506)
+-++++.+..++++.+.++++|-..++=|.|...-.. .....++ .+. .++++.|++-|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999643110 0000000 111 266788888777766
Q ss_pred HHhCCceeEEEeecCCceeeecccccccc-CCCC--cchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 010588 180 QKFGDRVKHWITFNEPHTFTIQGYDVGLQ-APGR--CSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRKKYKAKQ 256 (506)
Q Consensus 180 ~~~~~~v~~w~t~NEp~~~~~~~y~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~~~~~~~ 256 (506)
+.=-|-|. +.+-+||+...| -|.. +.+. +|-+ .-|-+.--...++.+|+..
T Consensus 153 ~aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~------yGGs-------lenR~Rf~~eii~~ir~~~---- 206 (337)
T PRK13523 153 EAGFDVIE---------IHGAHGYLINEFLSPLSNKRTDE------YGGS-------PENRYRFLREIIDAVKEVW---- 206 (337)
T ss_pred HcCCCEEE---------EccccchHHHHhcCCccCCcCCC------CCCC-------HHHHHHHHHHHHHHHHHhc----
Confidence 54224454 667788887654 3432 2221 1111 2233333345566666642
Q ss_pred CCcEEEEecCceee
Q 010588 257 GGSLGIAFDVIWYE 270 (506)
Q Consensus 257 ~gkIGi~~~~~~~~ 270 (506)
+..|++-++...+.
T Consensus 207 ~~~v~vRis~~d~~ 220 (337)
T PRK13523 207 DGPLFVRISASDYH 220 (337)
T ss_pred CCCeEEEecccccC
Confidence 45688877764333
No 150
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.92 E-value=1.8e+02 Score=30.24 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhH
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQII 168 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~ 168 (506)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|+++.+++.... ....
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMSH--------------MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CCCH
Confidence 589999999999999998755442 1248899999999999999886531 1234
Q ss_pred HHHHHHHHHHHHHhC
Q 010588 169 NDFATYAETCFQKFG 183 (506)
Q Consensus 169 ~~f~~ya~~~~~~~~ 183 (506)
+.+.+.++.+. .+|
T Consensus 144 e~l~~~a~~~~-~~G 157 (337)
T PRK08195 144 EKLAEQAKLME-SYG 157 (337)
T ss_pred HHHHHHHHHHH-hCC
Confidence 56677777754 455
No 151
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=29.90 E-value=1.2e+02 Score=26.24 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCeeEecc-ccccc-ccCCCCCCChHHHHHHHHHHHHHHHcCCcc
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWSRI-FPNGTGQINQAGVDHYNKLIDALLAKGIEP 142 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~ri-~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p 142 (506)
++.++.|+++|++.+++|+ +-..- ..+.-+ ....++-..+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 8999999999999999999 44442 221100 1223677889999999999986
No 152
>PTZ00445 p36-lilke protein; Provisional
Probab=29.78 E-value=90 Score=30.39 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=40.1
Q ss_pred HHHHHHcCCCeeEecccccccccCCCCCCChH---------HHHHHHHHHHHHHHcCCccEEEecC
Q 010588 92 VQLMKDMGMDAYRFSIAWSRIFPNGTGQINQA---------GVDHYNKLIDALLAKGIEPYVTLYH 148 (506)
Q Consensus 92 i~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~---------~~~~y~~~i~~l~~~gI~p~vtl~h 148 (506)
++++++.|++++=+.+.=.-|---.+|..++. +-.-+..++.+|+++||..+|.++.
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 68899999999988776554432212333332 3445788999999999998888764
No 153
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.62 E-value=1.1e+02 Score=34.36 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=38.0
Q ss_pred cHHHHHHHHHcCCCeeEecc-------------cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 88 YPEDVQLMKDMGMDAYRFSI-------------AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si-------------~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
..+-+.-+|+||++++=++= .+-+|.|. -| ..+=+++++++|+++||++|+.+
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~-~G-----t~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQ-LG-----GDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 34667889999999988764 22233333 12 13448999999999999999975
No 154
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=29.22 E-value=1.8e+02 Score=27.50 Aligned_cols=81 Identities=9% Similarity=0.072 Sum_probs=42.7
Q ss_pred ccccHHHHHHHHHcCCC--eeEecccccccccCCCCCCChHHHHHHHHHHHHHHHc--CCccEEEecCCCCcHHHHhhcC
Q 010588 85 YHRYPEDVQLMKDMGMD--AYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAK--GIEPYVTLYHWDLPQALDDKYK 160 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~--~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~--gI~p~vtl~h~~~P~wl~~~~g 160 (506)
-.+|.+..+.+++.|+. +|.|.- |... ..++ .+.+++.++.. -+-|++.+-. .|
T Consensus 45 D~~f~~n~~~A~~~Gl~vGaYHf~~------~~~~--~~~Q----A~~F~~~v~~~~~~lp~vlD~E~----------~~ 102 (190)
T cd06419 45 DDNFLSNFSRAQGTGLSVGVIHTFS------FSST--AAAQ----YRYFIRKVGNNTGNLPIAIYVSY----------YG 102 (190)
T ss_pred ChhHHHHHHHHHHCCCCEEEEEEee------cCCC--HHHH----HHHHHHhCCCCCCCCCeEEEEec----------CC
Confidence 35678888888888887 344311 1111 1122 34445544443 2223333321 12
Q ss_pred C--CCChhhHHHHHHHHHHHHHHhCCcee
Q 010588 161 G--WLDRQIINDFATYAETCFQKFGDRVK 187 (506)
Q Consensus 161 g--w~~~~~~~~f~~ya~~~~~~~~~~v~ 187 (506)
. ....+..+...+|++.|-++.|.++-
T Consensus 103 ~~~~~~~~~~~~~~~fl~~ve~~~g~~pi 131 (190)
T cd06419 103 DYNPDTKKSTQKLGLLVQLLEQHYNQSVI 131 (190)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 1 22356667888888888888876654
No 155
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=29.14 E-value=1.8e+02 Score=35.01 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=51.4
Q ss_pred HHHHhhcCCCcEEEeecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHhCCCceEEEEeccCcchhccc---C-
Q 010588 395 NYIKQKYRNPTVIITENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWA---A- 470 (506)
Q Consensus 395 ~~~~~rY~~~pI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~---~- 470 (506)
....+..++.|++++|.|.+..+.. |. + ++-.+++ +.-=.+.|=|.|..+|-=-.. +
T Consensus 497 ~~~~~~~~~kP~i~~Ey~hamgn~~-----g~---------~----~~yw~~~-~~~p~l~GgfiW~~~D~~~~~~~~~G 557 (1021)
T PRK10340 497 NEFGEYPHPKPRILCEYAHAMGNGP-----GG---------L----TEYQNVF-YKHDCIQGHYVWEWCDHGIQAQDDNG 557 (1021)
T ss_pred HHHHhCCCCCcEEEEchHhccCCCC-----CC---------H----HHHHHHH-HhCCceeEEeeeecCcccccccCCCC
Confidence 3333333458999999987654321 11 1 2333466 666789999999999931100 1
Q ss_pred ----CCCCcc------------eeEEEeCCCCCcccccchHHHHHHHHh
Q 010588 471 ----GYTSRF------------GLYFVDYKDNQKRYPKNSVQWFKNFLN 503 (506)
Q Consensus 471 ----Gy~~rf------------GL~~VD~~~~~~R~~K~S~~~y~~ii~ 503 (506)
+|.--| ||+. ..|+||++++.||++.+
T Consensus 558 ~~~~~ygGd~g~~p~~~~f~~~Glv~------~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 558 NVWYKYGGDYGDYPNNYNFCIDGLIY------PDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred CEEEEECCCCCCCCCCcCcccceeEC------CCCCCChhHHHHHHhcc
Confidence 122222 4442 35889999999999865
No 156
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=28.89 E-value=1.4e+02 Score=29.20 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 010588 125 VDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 125 ~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 183 (506)
.+...+.|..|+++|+++++++.-+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4556889999999999999999765544222 112445556666666666666664
No 157
>PRK12465 xylose isomerase; Provisional
Probab=28.37 E-value=4.5e+02 Score=28.29 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHH----HHHcCCccEE-EecCCCCcHHHHhhcCCCC
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDA----LLAKGIEPYV-TLYHWDLPQALDDKYKGWL 163 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~----l~~~gI~p~v-tl~h~~~P~wl~~~~ggw~ 163 (506)
+.=++.|.+||+..|-|- =..|.|+| ... .+..+-++++++. +.+.||+... |..-|..|... .|+.+
T Consensus 92 daaFEf~~kLG~~~~~FH--D~D~~Peg-~s~-~E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~---~GA~T 164 (445)
T PRK12465 92 DAAFEFFTKLGVPYYCFH--DIDLAPDA-DDI-GEYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYM---NGAST 164 (445)
T ss_pred HHHHHHHHHhCCCeeecc--ccccCCCC-CCH-HHHHHHHHHHHHHHHHHhhhhCceeeeeccccccCcccc---CCcCC
Confidence 334688999999998764 34678885 222 2223334555554 5567999654 56668899875 39999
Q ss_pred Chh
Q 010588 164 DRQ 166 (506)
Q Consensus 164 ~~~ 166 (506)
||+
T Consensus 165 nPD 167 (445)
T PRK12465 165 NPD 167 (445)
T ss_pred CCC
Confidence 975
No 158
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=28.34 E-value=1.2e+02 Score=27.09 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=39.8
Q ss_pred cHHHHHHHHHcCCCeeEecc-cccccccCC-C-CCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 88 YPEDVQLMKDMGMDAYRFSI-AWSRIFPNG-T-GQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si-~W~ri~P~g-~-g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
=+++++.|+++|+..+.+|+ +...-.-.. . +..+ ++-+-+.|+.++++|+...+.+
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGES---FKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcC---HHHHHHHHHHHHHcCCCceEEE
Confidence 37899999999999999999 443332221 1 2233 6677888889999888866554
No 159
>PRK01060 endonuclease IV; Provisional
Probab=28.18 E-value=2.6e+02 Score=27.58 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=37.5
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccE
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPY 143 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~ 143 (506)
+++=++.++++|++.+-+.+.-++.... +.++.+- .+++-+.+.++||+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 6888999999999999998866654433 2456433 4666667889999853
No 160
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=28.14 E-value=1.3e+02 Score=32.51 Aligned_cols=88 Identities=23% Similarity=0.389 Sum_probs=58.6
Q ss_pred cHHH-HHHHHHcCCCeeE-------------------------ecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCc
Q 010588 88 YPED-VQLMKDMGMDAYR-------------------------FSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIE 141 (506)
Q Consensus 88 ~~~D-i~lmk~lG~~~~R-------------------------~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~ 141 (506)
+++| ++++|+|.+...| +.+.|...|+++- | .+++++.|+..|.+
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~------G---t~EF~~~~e~iGae 120 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEF------G---THEFMDWCELIGAE 120 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccc------c---HHHHHHHHHHhCCc
Confidence 4566 6899999999988 3445554444432 2 47899999999999
Q ss_pred cEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHH--------HHHhCC----ceeEEEeecCCc
Q 010588 142 PYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETC--------FQKFGD----RVKHWITFNEPH 196 (506)
Q Consensus 142 p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~--------~~~~~~----~v~~w~t~NEp~ 196 (506)
|++++.= |. ...+....|.+||..= =+..|. .|++|.+=||-.
T Consensus 121 p~~avN~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 121 PYIAVNL-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred eEEEEec-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 9999854 22 2235556666666421 122232 489999999953
No 161
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=28.05 E-value=1.7e+02 Score=34.02 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=63.1
Q ss_pred CCCeeEeccc-ccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecC---CCCcHH--HHhh--------------
Q 010588 99 GMDAYRFSIA-WSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYH---WDLPQA--LDDK-------------- 158 (506)
Q Consensus 99 G~~~~R~si~-W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h---~~~P~w--l~~~-------------- 158 (506)
=+.++++.+. |.+ ..+.-.+|+.-+---+.||+.|++.||+.++-+.. -+.|.- +..+
T Consensus 295 P~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~ 372 (772)
T COG1501 295 PLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQA 372 (772)
T ss_pred cceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEeee
Confidence 3568888884 876 22223455444555579999999999998887653 222322 1111
Q ss_pred -----cC---CCCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeec
Q 010588 159 -----YK---GWLDRQIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQ 201 (506)
Q Consensus 159 -----~g---gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 201 (506)
.+ -++||+.++.|.+....-...+| -.-+|.=+|||.+....
T Consensus 373 ~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 373 DFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred cccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 01 17899999999974333333444 24679999999976543
No 162
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=28.05 E-value=3.4e+02 Score=28.87 Aligned_cols=92 Identities=12% Similarity=0.198 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHcCCCeeEecccccc-----------cccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec--------
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIAWSR-----------IFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY-------- 147 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~W~r-----------i~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~-------- 147 (506)
...+-++.++++|++.+-+.--|-. .+|+. .+| +.| ...+++.+++.|+++=+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 3466688899999999888889954 34442 233 234 68999999999999654220
Q ss_pred --CCCCcHHHHhhcC-----C-------CCChhhHHHHHHHHHHHHHHhC
Q 010588 148 --HWDLPQALDDKYK-----G-------WLDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 148 --h~~~P~wl~~~~g-----g-------w~~~~~~~~f~~ya~~~~~~~~ 183 (506)
.-..|.|+...-+ | ..+|++.+...+-...+++.+|
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 2347888753211 1 4578888888888888888886
No 163
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=27.95 E-value=1.8e+02 Score=32.15 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCCeeEecc-c-ccccccC-CCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-A-WSRIFPN-GTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~-W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.+++|+++|++.+-+++ + -.++.-. +.| .+ .+-..+.++.++++|+++.+.| =+++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-ht---~~~v~~Ai~~lr~~G~~v~~~L-M~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG-HT---VRDVVEATRLLRDAGLKVVYHI-MPGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-CC---HHHHHHHHHHHHHcCCeEEEEe-ecCCCC------------
Confidence 6889999999999888888 3 3333332 222 44 4556788999999999755444 234552
Q ss_pred hhHHHHHHHHHHHHH--Hh-CCceeEEEeecCCceeeeccccccccCCC
Q 010588 166 QIINDFATYAETCFQ--KF-GDRVKHWITFNEPHTFTIQGYDVGLQAPG 211 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~--~~-~~~v~~w~t~NEp~~~~~~~y~~g~~~Pg 211 (506)
++.+.+.+=++.+++ .+ -|.|+.+.+.=.|+.....-|..|.|.|.
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 234455555666664 23 46788777776777666656777777775
No 164
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=27.83 E-value=2.4e+02 Score=30.47 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCCCChHHHHHHHHHHHHHHHcCCccE-EEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPY-VTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~-vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.+++|+++|++.+-+++ +=+ .+...=....+ .+-..+.|+.+++.|++.+ +.| =+.+|.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dl-i~GlPg------------ 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQP---EEMVARAVELLRAAGFESINFDL-IYGLPH------------ 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeE-EEeCCC------------
Confidence 7899999999999777777 333 22222112344 5567889999999999743 333 334452
Q ss_pred hhHHHHHHHHHHHHHHhCCcee
Q 010588 166 QIINDFATYAETCFQKFGDRVK 187 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~ 187 (506)
++.+.|.+-.+.+.+.=-+++.
T Consensus 216 qt~e~~~~tl~~~~~l~p~~i~ 237 (453)
T PRK13347 216 QTVESFRETLDKVIALSPDRIA 237 (453)
T ss_pred CCHHHHHHHHHHHHhcCCCEEE
Confidence 3344555555555533233444
No 165
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=27.80 E-value=1.9e+02 Score=30.89 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=66.6
Q ss_pred ccHHHHHHHHHcCCCeeEecc--cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCC---Cc---HHHHhh
Q 010588 87 RYPEDVQLMKDMGMDAYRFSI--AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWD---LP---QALDDK 158 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~---~P---~wl~~~ 158 (506)
...+-++.+++.|+..=-+-| .|..-.. .-.+|++-+.-.+++++.|+++|++.++-+.-+- .+ ..-..+
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 456777888888887554444 4544222 2356666566679999999999999777654321 12 111100
Q ss_pred --------cCC----------------CCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCcee
Q 010588 159 --------YKG----------------WLDRQIINDFATYAETCFQKFGDRVKHWITFNEPHTF 198 (506)
Q Consensus 159 --------~gg----------------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 198 (506)
-.| |.+++..+.|.+..+.+++.+|= --+|+=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 112 78899999998888887777652 2468889999864
No 166
>PTZ00445 p36-lilke protein; Provisional
Probab=27.58 E-value=82 Score=30.65 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChh---------hHHHHHHHHHHHHH
Q 010588 127 HYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQ---------IINDFATYAETCFQ 180 (506)
Q Consensus 127 ~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~---------~~~~f~~ya~~~~~ 180 (506)
--+.+++.|++.||+.+++=+--++=. . .-|||.++. ..+.|......+-+
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnTlI~-~--HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLTMIT-K--HSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhhhh-h--hcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 358889999999999887633222211 1 238999997 55667777666544
No 167
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=27.37 E-value=76 Score=28.90 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=40.9
Q ss_pred CcCCccccccHHHHHH-HHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCcc
Q 010588 79 DVAVDQYHRYPEDVQL-MKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEP 142 (506)
Q Consensus 79 ~~a~d~y~~~~~Di~l-mk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p 142 (506)
..+|...+..++|++. ++++|+..+++.+.|+--... ..+.++| -..|+++||.|
T Consensus 35 y~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~--d~it~~g-------r~~l~~~giap 90 (146)
T TIGR02159 35 YSGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT--DWITEDA-------REKLREYGIAP 90 (146)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh--HHCCHHH-------HHHHHhcCccC
Confidence 3567778888999865 777899999998877654444 3566555 46789999997
No 168
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=27.34 E-value=7.1e+02 Score=25.74 Aligned_cols=135 Identities=22% Similarity=0.256 Sum_probs=78.5
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCC---cHHH------------HhhcC---------CCC--
Q 010588 110 SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDL---PQAL------------DDKYK---------GWL-- 163 (506)
Q Consensus 110 ~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~---P~wl------------~~~~g---------gw~-- 163 (506)
.+..|...+-++++.+..++++.+.++++|-..++=|.|... +.+. ... + +..
T Consensus 61 g~~~~~~~~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~-~~~~~~~~~~~~~~p 139 (338)
T cd02933 61 GQGYPNTPGIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAE-GKVFTPAGKVPYPTP 139 (338)
T ss_pred ccCCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCC-cccccccccCCCCCC
Confidence 344444335678888999999999999999999999999442 1110 000 0 111
Q ss_pred -------ChhhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeeccccccccC-CC--CcchhhhhhhcCCCCCChHHHH
Q 010588 164 -------DRQIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQA-PG--RCSILLHLFCRAGNSATEPYIV 233 (506)
Q Consensus 164 -------~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~-Pg--~~~~~~~~~~~~~~~~~~~~~~ 233 (506)
=.++++.|++-|+.+.+.=-|-|. +.+-+||+...|- |- .+.+ . +|-+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVe---------ih~ahGyLl~qFlSp~~N~R~D-----~-yGGs------- 197 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVE---------IHGANGYLIDQFLRDGSNKRTD-----E-YGGS------- 197 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE---------EccccchhHHHhcCCccCCCCC-----c-CCCc-------
Confidence 135668888877766665335555 5667788876543 42 1221 1 1111
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEecCceee
Q 010588 234 AHNALLTHAKVADIYRKKYKAKQGGSLGIAFDVIWYE 270 (506)
Q Consensus 234 ~hn~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~~~~ 270 (506)
.-|-+.-....++++|+... .+ .||+-++...+.
T Consensus 198 lenR~rf~~eii~air~~vg--~d-~v~vRis~~~~~ 231 (338)
T cd02933 198 IENRARFLLEVVDAVAEAIG--AD-RVGIRLSPFGTF 231 (338)
T ss_pred HHHhhhHHHHHHHHHHHHhC--CC-ceEEEECccccC
Confidence 12333334456667776532 23 589888865443
No 169
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=27.29 E-value=1.9e+02 Score=30.99 Aligned_cols=69 Identities=14% Similarity=0.300 Sum_probs=45.7
Q ss_pred HHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHH----HHHHcCCccE-EEecCCCCcHHHHhhcCCCCCh
Q 010588 91 DVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLID----ALLAKGIEPY-VTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 91 Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~----~l~~~gI~p~-vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
=++.|.+||+..|-|- =..|.|+|. .. .+..+-++++++ .+.+.||+.. +|..-|..|.+.. |+++||
T Consensus 83 aFef~~kLg~~~~~FH--D~D~~peg~-~~-~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnP 155 (434)
T TIGR02630 83 AFEFFEKLGVPYYCFH--DRDIAPEGA-SL-RETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSP 155 (434)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCCC-CH-HHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCC
Confidence 3566999999988664 346788852 22 222233444444 4556799854 5677899998763 999997
Q ss_pred h
Q 010588 166 Q 166 (506)
Q Consensus 166 ~ 166 (506)
+
T Consensus 156 d 156 (434)
T TIGR02630 156 D 156 (434)
T ss_pred C
Confidence 5
No 170
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=27.17 E-value=1.7e+02 Score=28.59 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=42.7
Q ss_pred ccChHHHHHHHHHHHhhcCC-CcEEEeecCCCCCCCCCCCCccccCchhHHHHHHHHHHHHHHhHHh-CCCceEEEE
Q 010588 384 YIVPRGMRSLMNYIKQKYRN-PTVIITENGMDDPNNRFTPTKEALKDDKRIKYHNDYLTNLLAAIKE-DGCNVKGYF 458 (506)
Q Consensus 384 ~i~P~Gl~~~L~~~~~rY~~-~pI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~-dGv~v~GY~ 458 (506)
.++=+.|..+..++..|=.. .-++|---|.+..+. + -....-.||..||.++.+.|+. .+|.+.|-=
T Consensus 116 niDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~s-------t-~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiG 184 (219)
T PF11775_consen 116 NIDGEALRWAAERLLARPEQRKILIVISDGAPADDS-------T-LSANDGDYLDAHLRQVIAEIETRSDVELIAIG 184 (219)
T ss_pred CCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCccc-------c-cccCChHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence 45556677677766655322 226666677776431 1 1224557999999999999932 478887754
No 171
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=27.12 E-value=2.4e+02 Score=28.53 Aligned_cols=59 Identities=22% Similarity=0.391 Sum_probs=47.3
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
-++|++...++|++.+-+.++=|...-.. -+.=-++.++.+.++++.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47999999999999999888655544431 233346789999999999999999998888
No 172
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=26.57 E-value=30 Score=27.46 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=15.8
Q ss_pred CccccccH--HHHHHHHHcCC
Q 010588 82 VDQYHRYP--EDVQLMKDMGM 100 (506)
Q Consensus 82 ~d~y~~~~--~Di~lmk~lG~ 100 (506)
.|||..|+ +|++.|+++|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 57777775 89999999996
No 173
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.44 E-value=1.9e+02 Score=29.45 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHcCCCeeEecc----cccccccC-C--CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHH
Q 010588 87 RYPEDVQLMKDMGMDAYRFSI----AWSRIFPN-G--TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQAL 155 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si----~W~ri~P~-g--~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl 155 (506)
..++=|++|+.+|+|.+-+=+ .+.. .|. + .|.+.++. ++++++-++++||++|..+ +.|..+
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 367889999999999988744 2221 222 1 47788665 6999999999999998877 555544
No 174
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.35 E-value=1.5e+02 Score=29.50 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=43.0
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP 152 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P 152 (506)
..+=++.++++|.+++.+....+|..... .++++.. ..+-+.+.++++.......|..++
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~--~~~~~~~---~~~~~~~~~~~~~~~~i~~Hapy~ 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP--MLEEEVI---DWFKAALETNKNLSQIVLVHAPYL 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC--CCCHHHH---HHHHHHHHHcCCCCcceeccCCee
Confidence 35668999999999999999999887763 4564444 444455788888755456675554
No 175
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=26.20 E-value=1.3e+02 Score=28.90 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=35.9
Q ss_pred HHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 93 QLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 93 ~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
+++|++|++.+=++-|=.| +.+ . | -.+-+..++++||+|++|+
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~E-t---d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKL-A---D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCc-c---H------HHHHHHHHHHCCCEEEEEE
Confidence 8999999999999998777 333 1 1 3777889999999999999
No 176
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=25.87 E-value=2.2e+02 Score=28.93 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=64.6
Q ss_pred HHHHHHHH---HcCCC-eeEecc-c-ccccccC-CCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCC
Q 010588 89 PEDVQLMK---DMGMD-AYRFSI-A-WSRIFPN-GTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKG 161 (506)
Q Consensus 89 ~~Di~lmk---~lG~~-~~R~si-~-W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~gg 161 (506)
++.+++|+ ++|++ .+-+++ + =.++.-. +.| .+ .+-+.+.++.++++||++.+.+. ..+|.
T Consensus 123 ~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg-~t---~~~~~~ai~~l~~~gi~v~~~lI-~GlPg-------- 189 (302)
T TIGR01212 123 DEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRG-HD---FACYVDAVKRARKRGIKVCSHVI-LGLPG-------- 189 (302)
T ss_pred HHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCc-Ch---HHHHHHHHHHHHHcCCEEEEeEE-ECCCC--------
Confidence 34455555 45884 566666 2 2222221 112 34 45578899999999998665542 24452
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeeccccccccCC
Q 010588 162 WLDRQIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQAP 210 (506)
Q Consensus 162 w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~P 210 (506)
++.+.+.+=++.+.+.=-+.|+.....-.|+.....-|..|.+.|
T Consensus 190 ----et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~ 234 (302)
T TIGR01212 190 ----EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKT 234 (302)
T ss_pred ----CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCC
Confidence 344667776776655545778888888888877666666666655
No 177
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=25.72 E-value=1.5e+02 Score=29.58 Aligned_cols=95 Identities=23% Similarity=0.352 Sum_probs=58.5
Q ss_pred cHHHHHHHH---HcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCc-cEE----------------Eec
Q 010588 88 YPEDVQLMK---DMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIE-PYV----------------TLY 147 (506)
Q Consensus 88 ~~~Di~lmk---~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~-p~v----------------tl~ 147 (506)
.++|++.|+ ++|.+. +..+ --|| .+-+.++++.|++.||+ |++ .++
T Consensus 143 ~~~~~~~L~~K~~aGA~f---------~iTQ--~~fd---~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~ 208 (272)
T TIGR00676 143 LEEDIENLKRKVDAGADY---------AITQ--LFFD---NDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERC 208 (272)
T ss_pred HHHHHHHHHHHHHcCCCe---------Eeec--cccC---HHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhcc
Confidence 456666444 567742 3344 2588 56689999999999776 332 234
Q ss_pred CCCCcHHHHhhcCCCCC--hhhHHHHHHHHHHHHHHhCCc-ee--EEEeecCCc
Q 010588 148 HWDLPQALDDKYKGWLD--RQIINDFATYAETCFQKFGDR-VK--HWITFNEPH 196 (506)
Q Consensus 148 h~~~P~wl~~~~ggw~~--~~~~~~f~~ya~~~~~~~~~~-v~--~w~t~NEp~ 196 (506)
.-.+|.|+.++.-...+ .+..+.-.++|..+++++-+. +. |-.|+|-+.
T Consensus 209 Gv~vP~~~~~~l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t~n~~~ 262 (272)
T TIGR00676 209 GAEIPAWLVKRLEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNRAD 262 (272)
T ss_pred CCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHH
Confidence 57789999877544333 233456777777777776432 32 455566554
No 178
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=25.64 E-value=1.2e+02 Score=31.60 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=47.3
Q ss_pred CcCCccc--cccHHHHHHHHHcCCCeeEecc----ccc-------ccccCC----CCCCChHHHHHHHHHHHHHHHcCCc
Q 010588 79 DVAVDQY--HRYPEDVQLMKDMGMDAYRFSI----AWS-------RIFPNG----TGQINQAGVDHYNKLIDALLAKGIE 141 (506)
Q Consensus 79 ~~a~d~y--~~~~~Di~lmk~lG~~~~R~si----~W~-------ri~P~g----~g~~n~~~~~~y~~~i~~l~~~gI~ 141 (506)
|+|-.++ +..++=|+.|+..++|.+.+=+ +|+ .+-..| +|.+.++- ++++|+-++++||+
T Consensus 9 DvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~d---i~eiv~yA~~rgI~ 85 (348)
T cd06562 9 DTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPED---VKEIVEYARLRGIR 85 (348)
T ss_pred eccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHH---HHHHHHHHHHcCCE
Confidence 4444333 3466778999999999887655 232 222121 24567554 79999999999999
Q ss_pred cEEEecCCCCcHHH
Q 010588 142 PYVTLYHWDLPQAL 155 (506)
Q Consensus 142 p~vtl~h~~~P~wl 155 (506)
+|.-+ |+|...
T Consensus 86 vIPEI---D~PGH~ 96 (348)
T cd06562 86 VIPEI---DTPGHT 96 (348)
T ss_pred EEEec---cCchhh
Confidence 88766 666543
No 179
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=25.39 E-value=6.7e+02 Score=26.49 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEE-EecCCCCcHHHHhhcCCCCC
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYV-TLYHWDLPQALDDKYKGWLD 164 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~v-tl~h~~~P~wl~~~~ggw~~ 164 (506)
-...+-++.++++|++.+=+ ....+.|-+ -...+. -...+++=+.|.++||++.. +..-+..|.+. .|++.+
T Consensus 32 ~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~-~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~---~g~las 104 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQER-DQIVRRFKKALDETGLKVPMVTTNLFSHPVFK---DGGFTS 104 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHH-HHHHHHHHHHHHHhCCeEEEeeccccCCcccc---CCCCCC
Confidence 35688899999999998854 334455653 111111 13367788889999999654 33333334442 378887
Q ss_pred h
Q 010588 165 R 165 (506)
Q Consensus 165 ~ 165 (506)
+
T Consensus 105 ~ 105 (382)
T TIGR02631 105 N 105 (382)
T ss_pred C
Confidence 5
No 180
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.37 E-value=1.4e+02 Score=32.16 Aligned_cols=98 Identities=13% Similarity=0.234 Sum_probs=63.7
Q ss_pred cccHHHHHHHHHcCCCeeEecc-cc------cccccCCCC---CC-ChHHHHHHHHHHHHHHHcCCccEEE---------
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSI-AW------SRIFPNGTG---QI-NQAGVDHYNKLIDALLAKGIEPYVT--------- 145 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si-~W------~ri~P~g~g---~~-n~~~~~~y~~~i~~l~~~gI~p~vt--------- 145 (506)
.+..+-++.++.||+|++=+.+ .+ |.+.|.-.+ .. -..|.+-...+|++.+++||+++.=
T Consensus 64 ~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~ 143 (418)
T COG1649 64 QELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPP 143 (418)
T ss_pred HHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCC
Confidence 3457778999999999988766 22 223333111 00 1344667889999999999998651
Q ss_pred --ecCCCCcHHHHh--------hcCCC-----C---ChhhHHHHHHHHHHHHHHhC
Q 010588 146 --LYHWDLPQALDD--------KYKGW-----L---DRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 146 --l~h~~~P~wl~~--------~~ggw-----~---~~~~~~~f~~ya~~~~~~~~ 183 (506)
-.|-..|.|+.. .++|| + .|++.+...+-+..++++|.
T Consensus 144 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 144 TSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred CChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 112333444433 34554 4 47888889999999999993
No 181
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=25.16 E-value=5.3e+02 Score=28.27 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCC-CCChHHHHHHHHHHHHHHHcCCccE-EEecCCCCcHHHHhhcCCCCC
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTG-QINQAGVDHYNKLIDALLAKGIEPY-VTLYHWDLPQALDDKYKGWLD 164 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g-~~n~~~~~~y~~~i~~l~~~gI~p~-vtl~h~~~P~wl~~~~ggw~~ 164 (506)
++-++.|+++|++.+.+++ +-+ ++... -| ..+ .+-..+.++.+++.|+..+ +.| =+++|.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~-igR~ht---~e~v~~ai~~ar~~Gf~~In~DL-I~GLPg----------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKA-IGRHHT---VEDIIEKFHLAREMGFDNINMDL-IIGLPG----------- 332 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHH-hCCCCC---HHHHHHHHHHHHhCCCCeEEEEE-EeCCCC-----------
Confidence 6789999999999666666 444 23332 12 244 5667889999999999533 343 345562
Q ss_pred hhhHHHHHHHHHHHHHHhCCceeEEEeecCCce
Q 010588 165 RQIINDFATYAETCFQKFGDRVKHWITFNEPHT 197 (506)
Q Consensus 165 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 197 (506)
++.+.|.+-.+.+.+.=.+++......=+|+.
T Consensus 333 -Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT 364 (488)
T PRK08207 333 -EGLEEVKHTLEEIEKLNPESLTVHTLAIKRAS 364 (488)
T ss_pred -CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCC
Confidence 34556666666655544456665544444443
No 182
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.06 E-value=7.6e+02 Score=25.34 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=34.0
Q ss_pred cccccc---CCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCC
Q 010588 109 WSRIFP---NGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHW 149 (506)
Q Consensus 109 W~ri~P---~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~ 149 (506)
-++..| ...+-++.+-+..++++.+.++++|-..++=|.|.
T Consensus 62 ~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~ 105 (338)
T cd04733 62 RHLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHP 105 (338)
T ss_pred ccccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence 346666 32467888999999999999999999999999993
No 183
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=24.97 E-value=4.2e+02 Score=28.04 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCC-CChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCCh
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQ-INQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~-~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~ 165 (506)
++.++.|+++|+|.+.+++ |-. .+... -|+ -+ .+-..+.++.+++.++.+-+.|- +.+|.
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~-lgR~h~---~~~~~~ai~~~~~~~~~v~~DlI-~GlPg------------ 173 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKK-LGRTHD---CMQAIKTIEAANTIFPRVSFDLI-YARSG------------ 173 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHH-cCCCCC---HHHHHHHHHHHHHhCCcEEEEee-cCCCC------------
Confidence 6899999999999888888 543 33333 122 23 33456667778877766666654 34552
Q ss_pred hhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeeccccccc
Q 010588 166 QIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGL 207 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~ 207 (506)
++.+.+.+=++.+.+-=.++|..+...=||+.....-+..|.
T Consensus 174 qt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~ 215 (390)
T PRK06582 174 QTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGN 215 (390)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCC
Confidence 334455555555555445678877777777655444333343
No 184
>PRK14567 triosephosphate isomerase; Provisional
Probab=24.85 E-value=1.6e+02 Score=29.45 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=36.5
Q ss_pred HHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec
Q 010588 93 QLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 93 ~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
.++|++|++.+=++-|=.|..=. +-| +.-.+-+..+.++||+|++|+-
T Consensus 79 ~mLkd~G~~yviiGHSERR~~f~---Etd----~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 79 RMLEDIGCDYLLIGHSERRSLFA---ESD----EDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHcCCCEEEECcccccCccC---CCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 89999999999999855443222 112 3457778889999999999993
No 185
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.78 E-value=2e+02 Score=25.70 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCce
Q 010588 125 VDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFGDRV 186 (506)
Q Consensus 125 ~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v 186 (506)
.+=+.-+++.|++.|++|++.+.= -.+.|.. |-| .+++..+.|.+-.+.++++.|=+|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCEE
Confidence 555788999999999999998832 1235553 445 357778888888888888887644
No 186
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=24.49 E-value=2e+02 Score=29.17 Aligned_cols=63 Identities=16% Similarity=0.398 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHcCCCeeEeccc----c-------cccccC--------CCCCCChHHHHHHHHHHHHHHHcCCccEEEec
Q 010588 87 RYPEDVQLMKDMGMDAYRFSIA----W-------SRIFPN--------GTGQINQAGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 87 ~~~~Di~lmk~lG~~~~R~si~----W-------~ri~P~--------g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
..++-|+.|+..++|.+.+-++ | +.+--. +.|.+.++- ++++++-++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec-
Confidence 4677899999999999887775 5 222211 135677555 6999999999999988776
Q ss_pred CCCCcHHH
Q 010588 148 HWDLPQAL 155 (506)
Q Consensus 148 h~~~P~wl 155 (506)
|+|...
T Consensus 93 --D~PGH~ 98 (303)
T cd02742 93 --DMPGHS 98 (303)
T ss_pred --cchHHH
Confidence 666544
No 187
>PRK08508 biotin synthase; Provisional
Probab=24.34 E-value=1.4e+02 Score=29.91 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=39.9
Q ss_pred cHHHHHHHHHcCCCeeEecc-cccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEE
Q 010588 88 YPEDVQLMKDMGMDAYRFSI-AWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVT 145 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si-~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vt 145 (506)
.+|.++.||++|++++-.++ .=+++.|.-...-+ ++-.-+.++.+++.||++--+
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~---~~~~l~~i~~a~~~Gi~v~sg 156 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHT---WEERFQTCENAKEAGLGLCSG 156 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCC---HHHHHHHHHHHHHcCCeecce
Confidence 48999999999999999988 32557776322233 555566788899999976443
No 188
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=24.32 E-value=1.1e+02 Score=37.59 Aligned_cols=63 Identities=14% Similarity=0.361 Sum_probs=39.6
Q ss_pred cccccH--HHHHHHHHcCCCeeEecccccccc-----cCC-CC--CCCh------------HHHHHHHHHHHHHHHcCCc
Q 010588 84 QYHRYP--EDVQLMKDMGMDAYRFSIAWSRIF-----PNG-TG--QINQ------------AGVDHYNKLIDALLAKGIE 141 (506)
Q Consensus 84 ~y~~~~--~Di~lmk~lG~~~~R~si~W~ri~-----P~g-~g--~~n~------------~~~~~y~~~i~~l~~~gI~ 141 (506)
-|.... +.|.-+|+||++++=+.=-..... +.| .+ -||. ...+=+++||++|+++||+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~ 262 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIA 262 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCE
Confidence 344444 668899999999987654221110 000 00 0110 1355689999999999999
Q ss_pred cEEEe
Q 010588 142 PYVTL 146 (506)
Q Consensus 142 p~vtl 146 (506)
+|+.+
T Consensus 263 VILDv 267 (1221)
T PRK14510 263 VILDV 267 (1221)
T ss_pred EEEEE
Confidence 99974
No 189
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.11 E-value=1.8e+02 Score=28.67 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=41.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 010588 113 FPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 113 ~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 183 (506)
.|-|+|.+| +..+++.|++.|-+..+++-++.-+. .+ ..+.+....+|.+.++++.|
T Consensus 226 ~p~G~G~id------~~~~~~~L~~~gy~G~~~~E~~~~~~--~~------~~~~~~~~~~~l~~~~~~~~ 282 (284)
T PRK13210 226 VPFGEGCVD------FVGIFKTLKELNYRGPFLIEMWTEKA--EE------PRAEIKQARRFLEPLMEEAG 282 (284)
T ss_pred ccCCCcccC------HHHHHHHHHHcCCCceEEEEEecCcc--cC------HHHHHHHHHHHHHHHHHHhc
Confidence 454578888 78999999999999889988765321 11 13567777888888877764
No 190
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=23.88 E-value=1.6e+02 Score=30.93 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=54.3
Q ss_pred CCcCCccccccHHHHHHHHHcCCCeeEecccccccccCCCCCC------ChHH-HHHHHHHHHHHHHcCCccEEEecCCC
Q 010588 78 ADVAVDQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQI------NQAG-VDHYNKLIDALLAKGIEPYVTLYHWD 150 (506)
Q Consensus 78 ~~~a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~------n~~~-~~~y~~~i~~l~~~gI~p~vtl~h~~ 150 (506)
+-+|.=||+ |+-=++-++. +..+|+. +|++ .... -+....+++.++++||..=++.+|-.
T Consensus 76 PlVADIHFd-~~lAl~a~~~--v~kiRIN----------PGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GS 142 (359)
T PF04551_consen 76 PLVADIHFD-YRLALEAIEA--VDKIRIN----------PGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGS 142 (359)
T ss_dssp -EEEEESTT-CHHHHHHHHC---SEEEE-----------TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGG
T ss_pred CeeeecCCC-HHHHHHHHHH--hCeEEEC----------CCcccccccccccchHHHHHHHHHHHHHCCCCEEEeccccc
Confidence 334555665 4554454444 8888875 3555 0112 35679999999999999999999999
Q ss_pred CcHHHHhhcCCCCChhhHHHHHHHHHH
Q 010588 151 LPQALDDKYKGWLDRQIINDFATYAET 177 (506)
Q Consensus 151 ~P~wl~~~~ggw~~~~~~~~f~~ya~~ 177 (506)
+|.-+..+| |-+....++.-.++++.
T Consensus 143 L~~~~~~ky-~~t~~amvesA~~~~~~ 168 (359)
T PF04551_consen 143 LEKDILEKY-GPTPEAMVESALEHVRI 168 (359)
T ss_dssp S-HHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred CcHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 999999888 33333444555555553
No 191
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.85 E-value=2e+02 Score=29.65 Aligned_cols=72 Identities=17% Similarity=0.365 Sum_probs=49.5
Q ss_pred CcCCccc--cccHHHHHHHHHcCCCeeEecc-----------cccccccCC---------CCCCChHHHHHHHHHHHHHH
Q 010588 79 DVAVDQY--HRYPEDVQLMKDMGMDAYRFSI-----------AWSRIFPNG---------TGQINQAGVDHYNKLIDALL 136 (506)
Q Consensus 79 ~~a~d~y--~~~~~Di~lmk~lG~~~~R~si-----------~W~ri~P~g---------~g~~n~~~~~~y~~~i~~l~ 136 (506)
|+|-.++ ...++-|+.|+..++|.+.+-+ +++.+-..| .|.+.++- ++++++-++
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~d---i~elv~yA~ 85 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQED---YKDIVAYAA 85 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHH---HHHHHHHHH
Confidence 4444443 3467889999999999877655 344443221 24577444 799999999
Q ss_pred HcCCccEEEecCCCCcHHHH
Q 010588 137 AKGIEPYVTLYHWDLPQALD 156 (506)
Q Consensus 137 ~~gI~p~vtl~h~~~P~wl~ 156 (506)
++||++|.-+ |+|....
T Consensus 86 ~rgI~vIPEi---D~PGH~~ 102 (329)
T cd06568 86 ERHITVVPEI---DMPGHTN 102 (329)
T ss_pred HcCCEEEEec---CCcHHHH
Confidence 9999988776 7776543
No 192
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.66 E-value=1.5e+02 Score=32.44 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWS-RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP 152 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P 152 (506)
++-+++|+++|++.+-+++ +=+ ++...=....+ .+-..+.|+.|+++||.+.+.+- +++|
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 4568999999999999988 433 33322112345 45578999999999999765542 2444
No 193
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=23.64 E-value=1.5e+02 Score=34.10 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHHHHHcCCCeeEecc--cccc--------------cccCC----CCCCCh-HHHHHHHHHHHHHHHcCCccEEEec
Q 010588 92 VQLMKDMGMDAYRFSI--AWSR--------------IFPNG----TGQINQ-AGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 92 i~lmk~lG~~~~R~si--~W~r--------------i~P~g----~g~~n~-~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
|.-+|+||++++-+.= +... .-|.. ++.|-. ...+=+++||++|+++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7889999999997654 1110 01110 011100 1245589999999999999999753
No 194
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=23.56 E-value=1.9e+02 Score=33.61 Aligned_cols=94 Identities=13% Similarity=0.284 Sum_probs=58.2
Q ss_pred ccccc-HHHHHHHHHcCCCeeEeccccc---------------ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec
Q 010588 84 QYHRY-PEDVQLMKDMGMDAYRFSIAWS---------------RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 84 ~y~~~-~~Di~lmk~lG~~~~R~si~W~---------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
.|.-. ++-+.-+|+||++++-+.=-.. .+.|. -| + .+=++++|++|.++||.+|+.+-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~-~G--t---p~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR-SG--T---PEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccc-cC--C---HHHHHHHHHHHHHCCCEEEEEec
Confidence 34443 3348999999999998763221 11111 12 1 24489999999999999999865
Q ss_pred C--CCC-------------cHHHHhhcCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 010588 148 H--WDL-------------PQALDDKYKG----W-------LDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 148 h--~~~-------------P~wl~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~~ 183 (506)
+ ..- +.|+.....| | .++++...+.+-++.-+++|+
T Consensus 322 ~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 322 HSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 3 211 2333211011 2 346777888888888888873
No 195
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=23.49 E-value=1.3e+02 Score=30.04 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=33.5
Q ss_pred ccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHH
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDAL 135 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l 135 (506)
.+..++||++++++|++-+=|++- -| +|.+| .+...++|+.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L----~~--dg~vD---~~~~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL----DV--DGHVD---MPRMRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE----CC--CCCcC---HHHHHHHHHHh
Confidence 456789999999999999999873 23 47899 55568888877
No 196
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.35 E-value=2.3e+02 Score=32.48 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHH
Q 010588 126 DHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQIINDFATYAETCFQ 180 (506)
Q Consensus 126 ~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~ 180 (506)
+.+..+++.|+++|+..=++.+|..++.-+..+||. +....++.-.+|++.|-+
T Consensus 210 e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 210 EVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 344559999999999999999999999999999875 444556666666665543
No 197
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.99 E-value=2.5e+02 Score=28.10 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=52.1
Q ss_pred CCccccccHHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHH
Q 010588 81 AVDQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALD 156 (506)
Q Consensus 81 a~d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~ 156 (506)
+....+...+-.+.+|++|++.+|-+..=+|--|.+ .| +- .+.+..+-+.+++.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G-~g---~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG-LG---EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC-cH---HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 455677778888999999999999998547777654 22 22 44567777778999999877777655555554
No 198
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=22.94 E-value=2e+02 Score=29.03 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=41.7
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHH
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALD 156 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~ 156 (506)
.++=+++++++||..+.+..- +.-++..+++|+++++.+.+++| +|..|--..|.=++
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~ 165 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLR 165 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHH
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCccc
Confidence 366789999999999999872 12468889999999999999998 66666555664443
No 199
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.91 E-value=63 Score=29.84 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=39.8
Q ss_pred ccccHHHHHHHHHcCCCeeEecccccccccC-CCCCCChHHHHHHHHHHHHHHHcCCccEE
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSIAWSRIFPN-GTGQINQAGVDHYNKLIDALLAKGIEPYV 144 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gI~p~v 144 (506)
....++-+++++.+|++.+++...+-...+. ....--....+.++++.+.+.++|+++.+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 5677889999999999999999753111111 00011134466778888888899987443
No 200
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=22.88 E-value=1.5e+02 Score=30.20 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=37.4
Q ss_pred cHHHHHHHHHcCCCeeE-ecc-cc-----cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe
Q 010588 88 YPEDVQLMKDMGMDAYR-FSI-AW-----SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL 146 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R-~si-~W-----~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl 146 (506)
.++.++.||++|++.+- .+. .- .++.|. ..+ .+-+.+.++.+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~---~~t---~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN---KLS---SDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC---CCC---HHHHHHHHHHHHHcCCCceeeE
Confidence 37889999999999885 343 22 123343 234 4556899999999999987664
No 201
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.76 E-value=2.7e+02 Score=27.58 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=51.8
Q ss_pred HHHHHHHHHcC----CCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCC
Q 010588 89 PEDVQLMKDMG----MDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWL 163 (506)
Q Consensus 89 ~~Di~lmk~lG----~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~ 163 (506)
.+|+++..+.| ++.+|+.++.+.+.-.. -+.=-++.++-..+.++.+++.|+++.+++.+ ++..
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~~ 140 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATRT 140 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCCC
Confidence 79999999999 99999987655443221 12222345777889999999999987655432 2222
Q ss_pred ChhhHHHHHHHHHHHHH
Q 010588 164 DRQIINDFATYAETCFQ 180 (506)
Q Consensus 164 ~~~~~~~f~~ya~~~~~ 180 (506)
..+.+.+.++.+.+
T Consensus 141 ---~~~~~~~~~~~~~~ 154 (268)
T cd07940 141 ---DLDFLIEVVEAAIE 154 (268)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 34556666666643
No 202
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.62 E-value=1.9e+02 Score=28.13 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=40.6
Q ss_pred ccccHHHHHHHHHcCCCeeEecccccccccCC--CCCCChHHHHHHHHHHHHHHHcCCccEEEe-cCCCCc
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNG--TGQINQAGVDHYNKLIDALLAKGIEPYVTL-YHWDLP 152 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g--~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl-~h~~~P 152 (506)
-+.+++=|++++++|.+.+++...+. |.. .-+..+..++...++.+.+.+.||...+=. .+++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 45667788999999999998644321 211 011223344667888888899999866532 344444
No 203
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.55 E-value=3e+02 Score=31.01 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=36.4
Q ss_pred cHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 010588 88 YPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP 152 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P 152 (506)
.++|+++..+.|++.+|+..+-+.+ +-....++..+++|....+++..-..|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 149 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSP 149 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCC
Confidence 5677899999999999998865443 124566677777777777666443334
No 204
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.51 E-value=4.3e+02 Score=26.95 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCeeEecc--cccccccCC--CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc---HHHHhh---
Q 010588 89 PEDVQLMKDMGMDAYRFSI--AWSRIFPNG--TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP---QALDDK--- 158 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si--~W~ri~P~g--~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P---~wl~~~--- 158 (506)
.+-++.+++.||..==+-| .|....-.. .-.+|.+-+---++||++|+++|++.++.+.-+-.| ..-+-+
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 4555667777765433333 444321100 113444444446789999999999988766544322 111100
Q ss_pred -----------c-----C------CCCChhhHHHHHHHHHHHHHHhCCceeEEEeecCCce
Q 010588 159 -----------Y-----K------GWLDRQIINDFATYAETCFQKFGDRVKHWITFNEPHT 197 (506)
Q Consensus 159 -----------~-----g------gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 197 (506)
+ . -++||+..+.|.+..+......|- --+|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 0 0 157899999998877666655542 246888999963
No 205
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=22.28 E-value=3.1e+02 Score=31.98 Aligned_cols=105 Identities=16% Similarity=0.344 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCC--eeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec---CCCCc-----------H
Q 010588 90 EDVQLMKDMGMD--AYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY---HWDLP-----------Q 153 (506)
Q Consensus 90 ~Di~lmk~lG~~--~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~---h~~~P-----------~ 153 (506)
+=++.+.++|+. ..=..|.|-.=.. +-.+|+..+-....+++.|+++|++.++.+. +-+.. .
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~yk--DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYK--DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhccc--ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 446778888887 4444455532222 3467777788899999999999999998886 22222 1
Q ss_pred HHHhhcC----------C------CCChhhHHHHHHHHHHHHHHhCCcee---EEEeecCCceeee
Q 010588 154 ALDDKYK----------G------WLDRQIINDFATYAETCFQKFGDRVK---HWITFNEPHTFTI 200 (506)
Q Consensus 154 wl~~~~g----------g------w~~~~~~~~f~~ya~~~~~~~~~~v~---~w~t~NEp~~~~~ 200 (506)
|..+.+| | ++|+++++.+.+ .+++|.+.|. +|+-.|||.-++.
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCCC
Confidence 1111111 2 667766666654 4458888775 6999999976653
No 206
>PRK12568 glycogen branching enzyme; Provisional
Probab=22.24 E-value=1.6e+02 Score=34.03 Aligned_cols=93 Identities=13% Similarity=0.283 Sum_probs=58.1
Q ss_pred ccccHHH-HHHHHHcCCCeeEecc--------ccc-------ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec-
Q 010588 85 YHRYPED-VQLMKDMGMDAYRFSI--------AWS-------RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY- 147 (506)
Q Consensus 85 y~~~~~D-i~lmk~lG~~~~R~si--------~W~-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~- 147 (506)
|.-..+. |.-+|+||++++-+.= +|. .+.|. -|. .+=++.+|++|.++||.+|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~-~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTAR-HGS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444444 5889999999986542 342 11111 121 34589999999999999999754
Q ss_pred -CCCCc----------HHHH--h-h---cCC-------CCChhhHHHHHHHHHHHHHHhC
Q 010588 148 -HWDLP----------QALD--D-K---YKG-------WLDRQIINDFATYAETCFQKFG 183 (506)
Q Consensus 148 -h~~~P----------~wl~--~-~---~gg-------w~~~~~~~~f~~ya~~~~~~~~ 183 (506)
|+..- .... + . +.. +.++++.+.+.+=|..-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 43221 1010 0 0 112 3467888888888888888885
No 207
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=22.12 E-value=1.9e+02 Score=28.62 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=37.2
Q ss_pred HHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec
Q 010588 93 QLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 93 ~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
+++|++|++.+=++-|=.|-.=. + .-+...+-+..++++||+|++|+-
T Consensus 78 ~mL~d~G~~~viiGHSERR~~f~------E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQYFG------E-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHcCCCEEEeCcccccCcCC------C-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 89999999999999865443321 1 135568888999999999999983
No 208
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=22.03 E-value=1.6e+02 Score=29.31 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=34.4
Q ss_pred HHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEec
Q 010588 93 QLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLY 147 (506)
Q Consensus 93 ~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~ 147 (506)
+++|++|++.+=++-|=.|..=. +-| +.-.+-+..++++||+|++|+-
T Consensus 80 ~mLkd~G~~~viiGHSERR~~f~---Etd----~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 80 EMLKDLGVKYVIIGHSERRQYFG---ETD----ELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHCCCCEEEeCcccccCccC---cCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 89999999999999865553322 112 2234445559999999999983
No 209
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.02 E-value=1.6e+02 Score=30.65 Aligned_cols=71 Identities=15% Similarity=0.335 Sum_probs=46.8
Q ss_pred CcCCccc--cccHHHHHHHHHcCCCeeEecc----c-------ccccccCC--------------------CCCCChHHH
Q 010588 79 DVAVDQY--HRYPEDVQLMKDMGMDAYRFSI----A-------WSRIFPNG--------------------TGQINQAGV 125 (506)
Q Consensus 79 ~~a~d~y--~~~~~Di~lmk~lG~~~~R~si----~-------W~ri~P~g--------------------~g~~n~~~~ 125 (506)
|+|-.++ +..++=|+.|+..++|.+.+-+ + .+.+-..| .|.+.++-
T Consensus 9 D~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~d- 87 (357)
T cd06563 9 DVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEE- 87 (357)
T ss_pred eccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHH-
Confidence 4444443 3356778999999999887655 2 33332111 24566444
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCCcHHH
Q 010588 126 DHYNKLIDALLAKGIEPYVTLYHWDLPQAL 155 (506)
Q Consensus 126 ~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl 155 (506)
++++++-++++||++|.-+ |+|...
T Consensus 88 --i~eiv~yA~~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 88 --IREIVAYAAERGITVIPEI---DMPGHA 112 (357)
T ss_pred --HHHHHHHHHHcCCEEEEec---CCchhH
Confidence 7999999999999988765 666543
No 210
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.84 E-value=3.4e+02 Score=26.71 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHc-CCccEE
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAK-GIEPYV 144 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~-gI~p~v 144 (506)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR--PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC--CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5679999999999999998888665444442 2343 4467777788888 665443
No 211
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=21.76 E-value=1.4e+02 Score=28.62 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecC
Q 010588 85 YHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYH 148 (506)
Q Consensus 85 y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h 148 (506)
....++||+.++++|++.+=|+.- -+ +|.+| .+...++++.+. |+-.++|
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L----~~--dg~iD---~~~~~~Li~~a~-----~~~~tFH 120 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGAL----TE--DGEID---EEALEELIEAAG-----GMPVTFH 120 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--B----ET--TSSB----HHHHHHHHHHHT-----TSEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeE----CC--CCCcC---HHHHHHHHHhcC-----CCeEEEe
Confidence 455789999999999999999862 23 47899 555688887765 6666777
No 212
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.72 E-value=2.8e+02 Score=28.92 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=59.5
Q ss_pred ccccccHHHHHHHHHcCCCeeEecccccccccC------CCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHH
Q 010588 83 DQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPN------GTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALD 156 (506)
Q Consensus 83 d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~------g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~ 156 (506)
+.+-.=++=++.+.++|++-+-+|+ +.+-|. |.-.|| +++-.++.+.+.+.||.++++ |.|+-
T Consensus 198 ng~~L~~~lv~eLeeAGLdRiNlSv--~aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~lP 266 (414)
T COG2100 198 NGVLLSKKLVDELEEAGLDRINLSV--DALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWLP 266 (414)
T ss_pred CceeccHHHHHHHHHhCCceEEeec--ccCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeecC
Confidence 3444556778899999999666666 344453 222678 888899999999999998775 77874
Q ss_pred hhcCCCCChhhHHHHHHHHHHHH
Q 010588 157 DKYKGWLDRQIINDFATYAETCF 179 (506)
Q Consensus 157 ~~~ggw~~~~~~~~f~~ya~~~~ 179 (506)
| .|.+-++.+.+||+.+-
T Consensus 267 ----G-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 267 ----G-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred ----C-cChHHHHHHHHHHHHhC
Confidence 2 46666788999988764
No 213
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=21.69 E-value=4.6e+02 Score=28.41 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCC---
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGW--- 162 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw--- 162 (506)
.|.++-.++++++|||..-+.=-= +-.....-++..=+.-..++-|..+..||++++++. |..|.-| ||.
T Consensus 183 qR~kDYAR~laSiGINg~v~NNVN--vk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l----GgL~TA 255 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNNVN--VKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL----GGLKTA 255 (684)
T ss_pred HHHHHHHHHHhhcCcceEEecccc--cchhhhheechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc----CCcCcC
Confidence 567788899999999987664210 000001123434455667888999999999999984 5778755 664
Q ss_pred --CChhhHHHHHHHHHHHHHHhCC
Q 010588 163 --LDRQIINDFATYAETCFQKFGD 184 (506)
Q Consensus 163 --~~~~~~~~f~~ya~~~~~~~~~ 184 (506)
+.+.+...+.+=|+.+.+-..|
T Consensus 256 DPLDe~VrawWkeka~~IY~yIPD 279 (684)
T COG3661 256 DPLDEAVRAWWKEKADEIYKYIPD 279 (684)
T ss_pred CcccHHHHHHHHHHHHHHHHhccc
Confidence 4567778888888888776654
No 214
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.48 E-value=5.2e+02 Score=26.02 Aligned_cols=108 Identities=13% Similarity=0.223 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCC--eeEecccccccc--c---CC--CCCCChHHHHHHHHHHHHHHHcCCccEEEecCC-CC-c---HH
Q 010588 89 PEDVQLMKDMGMD--AYRFSIAWSRIF--P---NG--TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHW-DL-P---QA 154 (506)
Q Consensus 89 ~~Di~lmk~lG~~--~~R~si~W~ri~--P---~g--~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~-~~-P---~w 154 (506)
++=++.+++.||. ++=+.+.|..-- + ++ .-.+|++-+--..++|+.|++.|++.++.+.-. .. | ..
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y 107 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY 107 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH
Confidence 4445666666665 444455564311 0 11 124454445556889999999999987766432 11 1 11
Q ss_pred --HHhhc-----------CCCCChhhHHHHHHHHHHHHHHhCCcee-EEEeecCCcee
Q 010588 155 --LDDKY-----------KGWLDRQIINDFATYAETCFQKFGDRVK-HWITFNEPHTF 198 (506)
Q Consensus 155 --l~~~~-----------ggw~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~~~ 198 (506)
+.... .-++||+..+.|-+-....+..+| |+ +|.=+|||..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G--idg~W~D~~E~~~~ 163 (292)
T cd06595 108 PEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG--VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC--CcEEEecCCCCccc
Confidence 22211 136677777766544444444444 54 68888999754
No 215
>PLN02923 xylose isomerase
Probab=21.02 E-value=7.1e+02 Score=26.96 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=52.2
Q ss_pred HHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHH----HHHcCCccEE-EecCCCCcHHHHhhcCCCCCh
Q 010588 91 DVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDA----LLAKGIEPYV-TLYHWDLPQALDDKYKGWLDR 165 (506)
Q Consensus 91 Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~----l~~~gI~p~v-tl~h~~~P~wl~~~~ggw~~~ 165 (506)
=++.|.+||+..|-|- =..|.|+|. .. .+..+.++++++. +.+.||+... |..-|..|.... |+.+||
T Consensus 128 aFEf~~kLG~~y~cFH--D~Dl~Peg~-sl-~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~---GAaTsp 200 (478)
T PLN02923 128 NFEFLKKLGVDRWCFH--DRDIAPDGK-TL-EESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMH---GAATSS 200 (478)
T ss_pred HHHHHHHhCCCeEccC--ccccCCCCC-CH-HHHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccC---CcCCCC
Confidence 3568999999988764 346788852 22 2333344555554 5567998655 566799998763 999987
Q ss_pred hhHHHHHHHHHHHHHH
Q 010588 166 QIINDFATYAETCFQK 181 (506)
Q Consensus 166 ~~~~~f~~ya~~~~~~ 181 (506)
+ .+.|+--|..|.+.
T Consensus 201 d-~dV~ayAaaqvk~a 215 (478)
T PLN02923 201 E-VGVYAYAAAQVKKA 215 (478)
T ss_pred C-HHHHHHHHHHHHHH
Confidence 5 34455444444433
No 216
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=20.85 E-value=4.5e+02 Score=27.27 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCeeEecccccccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcH
Q 010588 91 DVQLMKDMGMDAYRFSIAWSRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQ 153 (506)
Q Consensus 91 Di~lmk~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~ 153 (506)
+.+.+|++|.+++.|=+=|. |+++-.+|..-.++.+++.++|++++|-=++=+..++.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 36889999999999988875 4432357888899999999999999999999888886554
No 217
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=20.79 E-value=1.9e+02 Score=33.86 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHcCCCeeEecccc---------------cccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEe--cC
Q 010588 86 HRYPEDVQLMKDMGMDAYRFSIAW---------------SRIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTL--YH 148 (506)
Q Consensus 86 ~~~~~Di~lmk~lG~~~~R~si~W---------------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl--~h 148 (506)
....+-+.-+++||++++=+|=-+ .+|.|.= | +.+=+++++++|+++||.+|+.+ .|
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~edf~~Lv~aah~~Gm~vIlDiVpNH 89 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G-----GEEGLRRLSEAARARGLGLIVDIVPNH 89 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 446788899999999998766533 2344441 2 24448999999999999999974 45
Q ss_pred CC
Q 010588 149 WD 150 (506)
Q Consensus 149 ~~ 150 (506)
..
T Consensus 90 ~a 91 (825)
T TIGR02401 90 MA 91 (825)
T ss_pred cc
Confidence 44
No 218
>PRK10426 alpha-glucosidase; Provisional
Probab=20.76 E-value=5.2e+02 Score=29.41 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=66.1
Q ss_pred cHHHHHHHHHcCCCeeEecc-cccccccCCCC-------CCChHHHHHHHHHHHHHHHcCCccEEEecCC---CCcHHHH
Q 010588 88 YPEDVQLMKDMGMDAYRFSI-AWSRIFPNGTG-------QINQAGVDHYNKLIDALLAKGIEPYVTLYHW---DLPQALD 156 (506)
Q Consensus 88 ~~~Di~lmk~lG~~~~R~si-~W~ri~P~g~g-------~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~---~~P~wl~ 156 (506)
..+-++.+++.||..==+-| .|.......-| .+|.+-+-=.+++|+.|++.|++.++-+.-+ +.|..-+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 44557888999987655544 67644322111 2354444446899999999999977765432 2333322
Q ss_pred hh---------cC------------C---CCChhhHHHHHHHHHHHHHHhCCceeE-EEeecCC
Q 010588 157 DK---------YK------------G---WLDRQIINDFATYAETCFQKFGDRVKH-WITFNEP 195 (506)
Q Consensus 157 ~~---------~g------------g---w~~~~~~~~f~~ya~~~~~~~~~~v~~-w~t~NEp 195 (506)
.+ -| + ++||+..+.|.+..+..+...| |+. |.=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 11 01 1 7799999999887766555555 655 5778884
No 219
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=20.67 E-value=2.7e+02 Score=28.65 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCeeEecccccccccCC-CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCCCCChhh
Q 010588 89 PEDVQLMKDMGMDAYRFSIAWSRIFPNG-TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKGWLDRQI 167 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~ggw~~~~~ 167 (506)
.+=++.|++.|+|+|=+.=--.-.--.. ...+.++.++.++++++.++++||+-+++| .|-.... + ..
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~ai----sPg~~~~-~------s~ 86 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAI----SPGLDIC-Y------SS 86 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEE----BGTTT---T------SH
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEE----Ccccccc-c------Cc
Confidence 4557889999999997653111110000 234456668999999999999999999999 3432211 1 13
Q ss_pred HHHHHHHHHHHHHHhCCceeEEEe
Q 010588 168 INDFATYAETCFQKFGDRVKHWIT 191 (506)
Q Consensus 168 ~~~f~~ya~~~~~~~~~~v~~w~t 191 (506)
-+.+....+++-+-+.-.|...-+
T Consensus 87 ~~d~~~L~~K~~ql~~lGvr~Fai 110 (306)
T PF07555_consen 87 EEDFEALKAKFDQLYDLGVRSFAI 110 (306)
T ss_dssp HHHHHHHHHHHHHHHCTT--EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEE
Confidence 455666666666666556664433
No 220
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.62 E-value=76 Score=19.97 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCcc
Q 010588 128 YNKLIDALLAKGIEP 142 (506)
Q Consensus 128 y~~~i~~l~~~gI~p 142 (506)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467788888889887
No 221
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.50 E-value=1.5e+02 Score=28.61 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCeeEecc-ccccc------ccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHHHHhhcCC
Q 010588 89 PEDVQLMKDMGMDAYRFSI-AWSRI------FPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQALDDKYKG 161 (506)
Q Consensus 89 ~~Di~lmk~lG~~~~R~si-~W~ri------~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~wl~~~~gg 161 (506)
++=+.-+-+-|----.=+| +|||. .+.+.|.+...+...+..+|+..+++|++-++|...-.++.-|.. -|
T Consensus 80 ~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril~r--~G 157 (209)
T COG3916 80 TDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERILRR--AG 157 (209)
T ss_pred hhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHHHH--cC
Confidence 3334444442322223356 88888 555567788889999999999999999999999976555555432 45
Q ss_pred CC
Q 010588 162 WL 163 (506)
Q Consensus 162 w~ 163 (506)
|.
T Consensus 158 w~ 159 (209)
T COG3916 158 WP 159 (209)
T ss_pred CC
Confidence 54
No 222
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=20.35 E-value=92 Score=29.81 Aligned_cols=39 Identities=26% Similarity=0.499 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHhCCCceEEEEeccCcchhcccCC-----CCCcce
Q 010588 436 HNDYLTNLLAAIKEDGCNVKGYFVWSLLDNWEWAAG-----YTSRFG 477 (506)
Q Consensus 436 l~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G-----y~~rfG 477 (506)
.+.-|+-+.++++++|++.+|.++=.+|=+ .+| |..|||
T Consensus 147 ~~~I~~pt~~~l~~eg~~y~GvLy~glMlt---~~Gp~vlEfN~RfG 190 (194)
T PF01071_consen 147 IEEILEPTLKGLKKEGIPYRGVLYAGLMLT---EDGPKVLEFNVRFG 190 (194)
T ss_dssp HHHTHHHHHHHHHHTT---EEEEEEEEEEE---TTEEEEEEEESSGS
T ss_pred HHHHHHHHHHHHHhcCCCcceeeeeeeEEe---CCCcEEEEEeCCCC
Confidence 344577888888789999999999999877 333 666776
No 223
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=20.32 E-value=9.9e+02 Score=24.93 Aligned_cols=126 Identities=18% Similarity=0.191 Sum_probs=77.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCcHH----------HHh---hc----------------CCCC----
Q 010588 117 TGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLPQA----------LDD---KY----------------KGWL---- 163 (506)
Q Consensus 117 ~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P~w----------l~~---~~----------------ggw~---- 163 (506)
.+-+|.+-+.-++++.+.++++|-..++=|.|...-.. +.. +. .+-.
T Consensus 70 ~~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~m 149 (362)
T PRK10605 70 PGLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRAL 149 (362)
T ss_pred CcccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccC
Confidence 35678888999999999999999999999999532100 000 00 0000
Q ss_pred C----hhhHHHHHHHHHHHHHHhCCceeEEEeecCCceeeecccccccc-CCCC--cchhhhhhhcCCCCCChHHHHHHH
Q 010588 164 D----RQIINDFATYAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQ-APGR--CSILLHLFCRAGNSATEPYIVAHN 236 (506)
Q Consensus 164 ~----~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~~~~~hn 236 (506)
+ .++++.|++-|+.+.+.==|-|. +.+-+||+...| .|.. +.+.+ |-+ .-|
T Consensus 150 t~~eI~~ii~~f~~AA~rA~~AGfDGVE---------Ih~ahGyLl~qFLSp~~N~RtDeY------GGs-------lEN 207 (362)
T PRK10605 150 ELEEIPGIVNDFRQAIANAREAGFDLVE---------LHSAHGYLLHQFLSPSSNQRTDQY------GGS-------VEN 207 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEE---------EcccccchHHHhcCCcCCCCCCcC------CCc-------HHH
Confidence 0 46678888877776665445565 677888987654 4542 22211 111 224
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcEEEEecCc
Q 010588 237 ALLTHAKVADIYRKKYKAKQGGSLGIAFDVI 267 (506)
Q Consensus 237 ~llAHa~a~~~~r~~~~~~~~gkIGi~~~~~ 267 (506)
-+.---..++++|+... ++ .||+-++..
T Consensus 208 R~Rf~~Eiv~aVr~~vg--~~-~igvRis~~ 235 (362)
T PRK10605 208 RARLVLEVVDAGIAEWG--AD-RIGIRISPL 235 (362)
T ss_pred HHHHHHHHHHHHHHHcC--CC-eEEEEECCc
Confidence 44444567777787642 23 599888764
No 224
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=20.25 E-value=5.9e+02 Score=24.67 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=62.6
Q ss_pred ccccccHHHHHHHHHcCCCeeEecccccccccCCCCC-C--------ChHHHHHHHHHHHHHHH-cCCccEEEecCCCCc
Q 010588 83 DQYHRYPEDVQLMKDMGMDAYRFSIAWSRIFPNGTGQ-I--------NQAGVDHYNKLIDALLA-KGIEPYVTLYHWDLP 152 (506)
Q Consensus 83 d~y~~~~~Di~lmk~lG~~~~R~si~W~ri~P~g~g~-~--------n~~~~~~y~~~i~~l~~-~gI~p~vtl~h~~~P 152 (506)
.+++++.+|. .+...+||..+=--+.|...|. + |+.+.++.-+.|.+|.+ .|....+++
T Consensus 57 g~~~~l~~dy-----~~~~~~~~~~~~i~~i~~~~g~~l~Dirt~~dn~~aa~~I~~~v~~Lt~d~~~~lH~sI------ 125 (209)
T TIGR02584 57 GVLAKLRHDY-----FQGPRPPFDELRIYLIPTGQRKPLADIRTPADNEAAANFIVQTVAPLCAAQDHQLHASI------ 125 (209)
T ss_pred hHHHHHHHHH-----hccCccccCcceEEEecCCCCCCccccCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe------
Confidence 4666766666 2556677775322234444333 2 47778888888888884 888888887
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHHHHHHhCCceeEEEeecCC
Q 010588 153 QALDDKYKGWLDRQIINDFATYAETCFQKFGDRVKHWITFNEP 195 (506)
Q Consensus 153 ~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp 195 (506)
. || +++...+.-||-.++-|-.|++.+-. .+||
T Consensus 126 -----A-GG---RKtMg~~~g~A~sL~gr~qDrL~HVL-V~e~ 158 (209)
T TIGR02584 126 -----A-GG---RKTMGFYLGYALSLFGREQDRLSHVL-VSEP 158 (209)
T ss_pred -----c-Cc---HHHHHHHHHHHHHHhCCccceEEEEe-cCch
Confidence 2 77 78888888888888877777766533 3576
No 225
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.05 E-value=9.8e+02 Score=24.73 Aligned_cols=134 Identities=17% Similarity=0.115 Sum_probs=77.5
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHcCCccEEEecCCCCc---------HHHHhhcCC-----CCC---hhhHHHHHH
Q 010588 111 RIFPNGTGQINQAGVDHYNKLIDALLAKGIEPYVTLYHWDLP---------QALDDKYKG-----WLD---RQIINDFAT 173 (506)
Q Consensus 111 ri~P~g~g~~n~~~~~~y~~~i~~l~~~gI~p~vtl~h~~~P---------~wl~~~~gg-----w~~---~~~~~~f~~ 173 (506)
+..|...+-++++-+..++++.+.++++|-..++=|.|...- .......++ ... .++++.|++
T Consensus 62 ~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~ 141 (353)
T cd02930 62 KLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFAR 141 (353)
T ss_pred cCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 334433356788899999999999999999999999996431 100000000 111 356677887
Q ss_pred HHHHHHHHhCCceeEEEeecCCceeeeccccccccC-CCC--cchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 010588 174 YAETCFQKFGDRVKHWITFNEPHTFTIQGYDVGLQA-PGR--CSILLHLFCRAGNSATEPYIVAHNALLTHAKVADIYRK 250 (506)
Q Consensus 174 ya~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~-Pg~--~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~a~~~~r~ 250 (506)
=|+.+.+.=-|-|. +.+-.||+...|- |.. +.+. +|-+ +-|-+.--...++.+|+
T Consensus 142 aA~~a~~aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~------yGGs-------lenR~r~~~eiv~aIR~ 199 (353)
T cd02930 142 CAALAREAGYDGVE---------IMGSEGYLINQFLAPRTNKRTDE------WGGS-------FENRMRFPVEIVRAVRA 199 (353)
T ss_pred HHHHHHHcCCCEEE---------EecccchHHHHhcCCccCCCcCc------cCCC-------HHHHhHHHHHHHHHHHH
Confidence 77766554335565 5566788876543 422 1111 1111 22333333456677777
Q ss_pred hhccCCCCcEEEEecCce
Q 010588 251 KYKAKQGGSLGIAFDVIW 268 (506)
Q Consensus 251 ~~~~~~~gkIGi~~~~~~ 268 (506)
.. .++-.|++-++...
T Consensus 200 ~v--G~d~~v~iRi~~~D 215 (353)
T cd02930 200 AV--GEDFIIIYRLSMLD 215 (353)
T ss_pred Hc--CCCceEEEEecccc
Confidence 54 24557887777543
Done!