Query 010589
Match_columns 506
No_of_seqs 177 out of 1501
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 2.1E-66 4.6E-71 555.5 32.5 452 3-465 116-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 3.4E-52 7.5E-57 426.1 25.0 368 35-461 116-493 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 6.3E-43 1.4E-47 380.9 36.1 362 35-458 84-654 (654)
4 PRK15462 dipeptide/tripeptide 100.0 9.5E-43 2.1E-47 368.0 31.9 381 37-466 101-490 (493)
5 PF00854 PTR2: POT family; In 100.0 6.6E-45 1.4E-49 376.4 8.4 357 1-400 11-371 (372)
6 PRK10207 dipeptide/tripeptide 100.0 2.9E-37 6.2E-42 329.7 32.9 364 38-461 107-482 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 9.9E-37 2.2E-41 325.0 33.3 361 35-460 101-473 (475)
8 PRK09584 tppB putative tripept 100.0 4.3E-36 9.3E-41 322.0 31.9 364 36-463 112-487 (500)
9 PRK10489 enterobactin exporter 99.6 2.3E-12 5E-17 135.1 29.4 299 35-463 109-407 (417)
10 PRK11646 multidrug resistance 99.5 7.9E-12 1.7E-16 130.7 22.8 288 35-452 98-385 (400)
11 PRK03545 putative arabinose tr 99.4 3.5E-11 7.6E-16 125.0 25.6 284 35-455 96-380 (390)
12 TIGR00892 2A0113 monocarboxyla 99.4 8.3E-12 1.8E-16 132.8 20.1 308 36-449 107-415 (455)
13 TIGR00893 2A0114 d-galactonate 99.4 1.3E-10 2.8E-15 119.0 26.8 87 35-127 81-167 (399)
14 PRK15402 multidrug efflux syst 99.4 2.1E-10 4.5E-15 119.8 28.2 269 35-414 100-369 (406)
15 PRK09874 drug efflux system pr 99.4 4.8E-11 1E-15 124.2 22.8 293 35-455 106-398 (408)
16 PRK11551 putative 3-hydroxyphe 99.4 3E-10 6.6E-15 118.4 28.5 85 35-125 102-186 (406)
17 PF05977 MFS_3: Transmembrane 99.4 3.9E-10 8.5E-15 121.3 28.6 266 35-414 102-368 (524)
18 PRK10504 putative transporter; 99.4 3.1E-10 6.8E-15 120.9 27.7 88 35-128 97-184 (471)
19 PRK10054 putative transporter; 99.4 4.3E-11 9.3E-16 124.9 20.4 262 35-413 95-357 (395)
20 cd06174 MFS The Major Facilita 99.4 2E-10 4.4E-15 115.8 24.5 262 35-452 86-349 (352)
21 TIGR00900 2A0121 H+ Antiporter 99.4 1.8E-10 4E-15 117.2 24.2 269 35-413 91-361 (365)
22 PRK05122 major facilitator sup 99.3 9.3E-10 2E-14 114.5 29.1 277 35-453 111-387 (399)
23 TIGR00902 2A0127 phenyl propri 99.3 4.8E-10 1E-14 116.3 25.9 281 35-450 93-374 (382)
24 TIGR00879 SP MFS transporter, 99.3 1.4E-10 3.1E-15 122.2 22.2 88 35-128 126-216 (481)
25 PRK14995 methyl viologen resis 99.3 4.1E-10 8.8E-15 121.1 23.8 312 35-412 93-410 (495)
26 PRK11128 putative 3-phenylprop 99.3 8.8E-10 1.9E-14 114.3 25.4 261 35-414 93-354 (382)
27 TIGR00894 2A0114euk Na(+)-depe 99.3 9.8E-10 2.1E-14 117.0 26.1 84 36-125 131-215 (465)
28 PRK06814 acylglycerophosphoeth 99.3 4.3E-10 9.4E-15 132.8 25.5 281 35-413 107-394 (1140)
29 PRK12382 putative transporter; 99.3 3.1E-09 6.8E-14 110.3 28.4 276 35-453 111-387 (392)
30 TIGR00711 efflux_EmrB drug res 99.3 6.6E-10 1.4E-14 118.5 24.0 311 35-413 89-408 (485)
31 PRK11010 ampG muropeptide tran 99.3 4.1E-09 8.9E-14 113.2 29.6 86 35-126 106-192 (491)
32 TIGR00792 gph sugar (Glycoside 99.2 1.4E-09 3E-14 114.4 24.2 310 36-461 99-423 (437)
33 PRK10213 nepI ribonucleoside t 99.2 2.8E-09 6E-14 111.2 25.9 82 35-122 107-188 (394)
34 TIGR00710 efflux_Bcr_CflA drug 99.2 3.9E-09 8.4E-14 108.6 26.7 88 35-128 92-179 (385)
35 PRK11663 regulatory protein Uh 99.2 4.2E-09 9.2E-14 111.2 27.5 81 35-121 110-190 (434)
36 PF07690 MFS_1: Major Facilita 99.2 3.1E-10 6.7E-15 115.0 18.0 267 36-406 85-352 (352)
37 PRK10473 multidrug efflux syst 99.2 6.5E-09 1.4E-13 108.0 28.0 85 35-125 90-174 (392)
38 TIGR00895 2A0115 benzoate tran 99.2 4.5E-09 9.7E-14 108.2 25.5 84 35-124 104-187 (398)
39 TIGR00901 2A0125 AmpG-related 99.2 2.8E-09 6.1E-14 109.1 23.6 262 35-399 82-355 (356)
40 PRK10077 xylE D-xylose transpo 99.2 4.2E-09 9.1E-14 112.2 25.6 87 35-127 119-213 (479)
41 PRK03893 putative sialic acid 99.2 2.9E-09 6.4E-14 114.0 24.4 79 35-119 107-185 (496)
42 PRK12307 putative sialic acid 99.2 1.7E-09 3.8E-14 113.4 22.2 78 35-118 105-182 (426)
43 PRK15403 multidrug efflux syst 99.2 9.4E-09 2E-13 108.0 27.7 85 35-125 103-187 (413)
44 PRK11102 bicyclomycin/multidru 99.2 1.2E-08 2.6E-13 105.1 27.5 87 35-127 78-164 (377)
45 TIGR00899 2A0120 sugar efflux 99.2 7.7E-09 1.7E-13 106.1 25.6 87 35-127 86-174 (375)
46 PRK09705 cynX putative cyanate 99.2 1.1E-08 2.5E-13 106.5 26.6 81 35-122 96-177 (393)
47 KOG1330 Sugar transporter/spin 99.2 1.1E-10 2.5E-15 119.5 10.9 90 34-129 119-210 (493)
48 PRK11273 glpT sn-glycerol-3-ph 99.2 1.6E-08 3.6E-13 107.3 27.9 84 35-124 119-203 (452)
49 PRK11652 emrD multidrug resist 99.1 1.6E-08 3.4E-13 105.2 25.3 83 35-123 95-177 (394)
50 TIGR00890 2A0111 Oxalate/Forma 99.1 3.5E-09 7.6E-14 108.1 19.9 84 35-125 90-173 (377)
51 TIGR00898 2A0119 cation transp 99.1 2.8E-08 6E-13 106.9 27.1 85 35-128 179-263 (505)
52 PRK15011 sugar efflux transpor 99.1 2.1E-08 4.5E-13 104.5 24.9 73 51-127 120-192 (393)
53 TIGR00881 2A0104 phosphoglycer 99.1 5.7E-09 1.2E-13 106.6 19.5 86 35-126 82-168 (379)
54 PRK03633 putative MFS family t 99.1 3.6E-08 7.9E-13 102.1 25.6 71 35-111 93-163 (381)
55 PRK11043 putative transporter; 99.1 2.3E-08 4.9E-13 104.2 24.1 87 35-127 93-179 (401)
56 PRK10091 MFS transport protein 99.1 2.1E-08 4.5E-13 104.0 23.7 84 35-124 90-173 (382)
57 PRK08633 2-acyl-glycerophospho 99.1 3.1E-08 6.8E-13 117.0 27.9 270 35-413 102-382 (1146)
58 PRK10642 proline/glycine betai 99.1 4.5E-08 9.8E-13 105.1 25.9 76 38-119 120-203 (490)
59 PRK11195 lysophospholipid tran 99.1 8.5E-08 1.8E-12 100.0 26.8 261 40-413 92-354 (393)
60 TIGR01299 synapt_SV2 synaptic 99.1 8.5E-08 1.9E-12 107.1 27.9 88 35-128 254-354 (742)
61 PF13347 MFS_2: MFS/sugar tran 99.1 5.4E-08 1.2E-12 102.6 25.3 335 1-460 75-426 (428)
62 PLN00028 nitrate transmembrane 99.1 2.1E-08 4.6E-13 107.3 22.2 84 35-125 123-215 (476)
63 PRK11902 ampG muropeptide tran 99.1 2.1E-07 4.5E-12 97.3 29.1 85 35-125 93-178 (402)
64 PRK09848 glucuronide transport 99.0 4.3E-08 9.2E-13 104.0 24.0 130 307-460 293-429 (448)
65 TIGR00903 2A0129 major facilit 99.0 8E-08 1.7E-12 99.4 24.9 83 35-124 78-160 (368)
66 TIGR00891 2A0112 putative sial 99.0 3.7E-08 8E-13 101.9 22.6 83 35-123 99-183 (405)
67 PRK03699 putative transporter; 99.0 2.1E-07 4.6E-12 96.9 28.3 84 35-124 94-178 (394)
68 COG2814 AraJ Arabinose efflux 99.0 8.5E-08 1.8E-12 98.4 24.2 88 35-128 100-187 (394)
69 TIGR00883 2A0106 metabolite-pr 99.0 5E-08 1.1E-12 100.2 22.1 82 37-124 97-186 (394)
70 TIGR00788 fbt folate/biopterin 99.0 2.6E-08 5.7E-13 106.3 18.2 286 39-414 123-412 (468)
71 TIGR01301 GPH_sucrose GPH fami 98.9 3.2E-07 6.9E-12 97.6 25.9 334 37-457 115-473 (477)
72 TIGR00712 glpT glycerol-3-phos 98.9 2.9E-07 6.3E-12 97.3 25.6 84 35-124 117-201 (438)
73 PRK09669 putative symporter Ya 98.9 2.5E-07 5.4E-12 98.0 24.0 104 352-460 318-430 (444)
74 PRK10429 melibiose:sodium symp 98.9 1.9E-07 4.2E-12 99.8 23.2 155 272-460 271-435 (473)
75 PRK09952 shikimate transporter 98.9 5.7E-07 1.2E-11 95.2 26.5 77 38-120 127-211 (438)
76 PRK09528 lacY galactoside perm 98.9 2.1E-07 4.5E-12 97.8 21.5 136 271-454 266-402 (420)
77 TIGR00897 2A0118 polyol permea 98.9 2.9E-06 6.3E-11 88.7 29.9 77 35-117 104-181 (402)
78 TIGR02332 HpaX 4-hydroxyphenyl 98.9 7.2E-07 1.6E-11 93.7 25.3 85 35-125 95-185 (412)
79 TIGR00887 2A0109 phosphate:H+ 98.9 9.3E-07 2E-11 95.3 26.3 85 35-125 114-221 (502)
80 TIGR00896 CynX cyanate transpo 98.9 5.3E-07 1.1E-11 92.3 23.2 80 35-121 86-167 (355)
81 PRK09556 uhpT sugar phosphate 98.9 3E-07 6.4E-12 98.2 22.1 83 35-123 121-206 (467)
82 PRK10406 alpha-ketoglutarate t 98.9 1.8E-06 4E-11 91.1 27.5 81 35-121 123-211 (432)
83 KOG2532 Permease of the major 98.8 3.9E-07 8.5E-12 96.7 21.6 87 35-127 127-214 (466)
84 PRK15075 citrate-proton sympor 98.8 1.8E-06 3.9E-11 91.2 26.4 73 38-116 119-199 (434)
85 TIGR00889 2A0110 nucleoside tr 98.8 1.7E-06 3.7E-11 91.1 24.9 148 271-456 255-403 (418)
86 COG2271 UhpC Sugar phosphate p 98.8 5.4E-07 1.2E-11 92.0 19.9 90 35-130 116-208 (448)
87 TIGR00926 2A1704 Peptide:H+ sy 98.8 4.2E-07 9.1E-12 100.3 20.8 252 35-335 81-342 (654)
88 TIGR00882 2A0105 oligosacchari 98.8 1.2E-06 2.7E-11 91.1 23.2 106 310-452 286-392 (396)
89 TIGR02718 sider_RhtX_FptX side 98.7 5E-06 1.1E-10 86.4 25.9 54 75-128 130-183 (390)
90 PRK11462 putative transporter; 98.7 7.9E-06 1.7E-10 87.1 26.0 81 39-124 112-199 (460)
91 KOG3764 Vesicular amine transp 98.7 6.8E-07 1.5E-11 90.4 15.8 107 1-127 139-245 (464)
92 KOG2533 Permease of the major 98.6 9.9E-06 2.1E-10 86.5 25.3 88 35-128 133-227 (495)
93 PF03209 PUCC: PUCC protein; 98.6 3.1E-05 6.7E-10 79.4 27.0 271 33-415 86-363 (403)
94 TIGR01272 gluP glucose/galacto 98.6 1.7E-05 3.6E-10 80.2 24.7 86 34-125 8-109 (310)
95 PRK10133 L-fucose transporter; 98.6 1.3E-05 2.9E-10 84.8 24.7 62 35-102 116-177 (438)
96 TIGR00885 fucP L-fucose:H+ sym 98.4 3.1E-05 6.7E-10 81.3 22.2 84 35-124 93-202 (410)
97 TIGR00805 oat sodium-independe 98.4 9.2E-05 2E-09 82.1 25.1 88 36-129 172-281 (633)
98 TIGR00886 2A0108 nitrite extru 98.4 1.3E-05 2.9E-10 81.9 17.0 77 35-118 90-177 (366)
99 PF03092 BT1: BT1 family; Int 98.4 3E-05 6.4E-10 82.1 19.4 91 36-130 86-176 (433)
100 KOG0569 Permease of the major 98.3 0.00011 2.4E-09 77.8 22.7 337 35-467 115-466 (485)
101 COG2211 MelB Na+/melibiose sym 98.3 0.00019 4E-09 75.6 23.0 127 309-461 303-439 (467)
102 KOG1330 Sugar transporter/spin 98.3 3E-06 6.6E-11 87.4 9.3 149 270-465 71-219 (493)
103 PF06609 TRI12: Fungal trichot 98.2 0.00077 1.7E-08 73.4 27.5 86 35-127 130-215 (599)
104 PF11700 ATG22: Vacuole efflux 98.1 0.0038 8.3E-08 66.8 29.2 59 358-416 385-443 (477)
105 TIGR00893 2A0114 d-galactonate 98.1 7.8E-05 1.7E-09 76.1 15.6 137 270-454 32-168 (399)
106 KOG2504 Monocarboxylate transp 98.1 0.00031 6.8E-09 75.6 20.7 120 306-461 363-482 (509)
107 PRK03545 putative arabinose tr 98.1 0.00014 3.1E-09 75.5 17.6 111 270-413 47-157 (390)
108 PRK11551 putative 3-hydroxyphe 98.1 0.00026 5.5E-09 73.7 19.6 111 270-413 53-163 (406)
109 TIGR02332 HpaX 4-hydroxyphenyl 98.1 0.00017 3.6E-09 75.8 17.9 110 271-413 47-156 (412)
110 KOG0255 Synaptic vesicle trans 98.1 0.0023 5E-08 69.2 26.9 81 35-124 170-250 (521)
111 PRK11663 regulatory protein Uh 98.0 0.00044 9.6E-09 73.0 20.4 111 270-413 61-171 (434)
112 PF07690 MFS_1: Major Facilita 98.0 0.00018 3.8E-09 72.7 16.4 133 270-450 35-167 (352)
113 COG2807 CynX Cyanate permease 98.0 0.0015 3.1E-08 66.1 21.9 85 35-126 98-183 (395)
114 KOG3762 Predicted transporter 98.0 0.00012 2.6E-09 77.1 14.8 142 271-460 410-552 (618)
115 COG2814 AraJ Arabinose efflux 98.0 0.0003 6.5E-09 72.5 17.6 140 269-456 50-189 (394)
116 TIGR00710 efflux_Bcr_CflA drug 98.0 0.00017 3.7E-09 74.0 16.0 111 270-413 43-153 (385)
117 COG2223 NarK Nitrate/nitrite t 98.0 0.00022 4.7E-09 73.2 16.2 88 35-130 104-194 (417)
118 COG0738 FucP Fucose permease [ 98.0 0.0032 6.8E-08 64.6 23.5 84 2-103 82-165 (422)
119 PF01306 LacY_symp: LacY proto 97.9 0.0017 3.6E-08 67.7 21.0 91 351-456 310-401 (412)
120 TIGR00881 2A0104 phosphoglycer 97.9 9.6E-05 2.1E-09 75.3 11.6 138 270-455 33-171 (379)
121 PRK14995 methyl viologen resis 97.9 0.0018 3.8E-08 69.8 21.8 112 270-414 44-156 (495)
122 TIGR00895 2A0115 benzoate tran 97.9 0.00017 3.7E-09 74.1 13.5 111 270-413 55-165 (398)
123 TIGR00880 2_A_01_02 Multidrug 97.9 0.00067 1.5E-08 58.2 15.2 133 273-453 4-136 (141)
124 PRK15034 nitrate/nitrite trans 97.9 0.0049 1.1E-07 65.5 24.2 59 35-100 127-185 (462)
125 KOG2615 Permease of the major 97.9 0.00065 1.4E-08 68.9 16.5 59 355-413 354-412 (451)
126 TIGR00891 2A0112 putative sial 97.9 0.00099 2.1E-08 68.7 18.8 111 270-413 50-160 (405)
127 PRK10213 nepI ribonucleoside t 97.9 0.0016 3.4E-08 68.0 20.1 111 270-413 58-168 (394)
128 PF03825 Nuc_H_symport: Nucleo 97.8 0.0068 1.5E-07 63.4 24.2 92 356-456 304-396 (400)
129 TIGR00711 efflux_EmrB drug res 97.8 0.00078 1.7E-08 71.7 17.5 111 270-413 40-150 (485)
130 PRK10054 putative transporter; 97.8 0.0013 2.7E-08 68.7 18.6 111 270-413 46-156 (395)
131 TIGR00900 2A0121 H+ Antiporter 97.8 0.00089 1.9E-08 67.8 16.9 116 270-413 37-152 (365)
132 PRK10091 MFS transport protein 97.8 0.0017 3.7E-08 67.2 19.0 111 270-413 41-151 (382)
133 TIGR00894 2A0114euk Na(+)-depe 97.7 0.00046 1E-08 73.4 14.1 112 271-413 80-191 (465)
134 PRK11646 multidrug resistance 97.7 0.0024 5.2E-08 66.7 19.1 107 274-413 53-159 (400)
135 PTZ00207 hypothetical protein; 97.7 0.011 2.4E-07 64.7 24.5 85 35-128 119-205 (591)
136 PRK09556 uhpT sugar phosphate 97.7 0.00048 1E-08 73.5 13.8 115 270-412 67-181 (467)
137 PRK10473 multidrug efflux syst 97.7 0.0016 3.5E-08 67.4 17.5 135 271-453 42-176 (392)
138 KOG3626 Organic anion transpor 97.7 0.0023 5E-08 70.6 18.9 91 36-132 236-346 (735)
139 KOG3098 Uncharacterized conser 97.7 0.023 5E-07 60.0 25.6 166 271-466 279-446 (461)
140 KOG0254 Predicted transporter 97.7 0.0081 1.8E-07 65.0 22.8 84 35-124 141-225 (513)
141 KOG2325 Predicted transporter/ 97.7 0.00063 1.4E-08 71.9 13.3 158 270-461 74-235 (488)
142 PRK05122 major facilitator sup 97.7 7.8E-05 1.7E-09 77.5 6.6 90 36-131 302-391 (399)
143 PRK09874 drug efflux system pr 97.7 0.0038 8.2E-08 64.8 19.3 136 271-455 58-193 (408)
144 PRK12307 putative sialic acid 97.6 0.0028 6.1E-08 66.3 18.1 111 270-413 56-166 (426)
145 KOG3764 Vesicular amine transp 97.6 0.00028 6E-09 71.9 9.7 145 269-461 108-253 (464)
146 TIGR00886 2A0108 nitrite extru 97.6 0.0044 9.6E-08 63.1 18.9 109 270-411 40-148 (366)
147 PRK10504 putative transporter; 97.6 0.0058 1.3E-07 65.0 20.5 110 271-413 49-158 (471)
148 PRK03699 putative transporter; 97.6 0.0062 1.3E-07 63.3 20.2 110 270-412 45-154 (394)
149 TIGR00879 SP MFS transporter, 97.6 0.0009 2E-08 70.3 13.7 110 270-409 74-183 (481)
150 TIGR00805 oat sodium-independe 97.6 0.0007 1.5E-08 75.1 12.7 133 270-413 71-232 (633)
151 TIGR00890 2A0111 Oxalate/Forma 97.6 0.0031 6.7E-08 64.0 16.7 137 270-455 41-177 (377)
152 TIGR01299 synapt_SV2 synaptic 97.5 0.0098 2.1E-07 67.0 21.6 110 270-412 205-314 (742)
153 PRK03633 putative MFS family t 97.5 0.0087 1.9E-07 61.9 20.0 111 270-413 44-154 (381)
154 PRK15403 multidrug efflux syst 97.5 0.0035 7.7E-08 65.8 17.2 132 272-451 56-187 (413)
155 PRK11273 glpT sn-glycerol-3-ph 97.5 0.0056 1.2E-07 65.0 18.8 107 271-406 67-173 (452)
156 TIGR00880 2_A_01_02 Multidrug 97.5 0.00023 5.1E-09 61.2 6.5 88 35-128 50-137 (141)
157 TIGR00712 glpT glycerol-3-phos 97.5 0.0063 1.4E-07 64.3 18.3 144 270-456 64-207 (438)
158 PRK11102 bicyclomycin/multidru 97.5 0.0039 8.6E-08 63.9 16.0 111 270-413 29-139 (377)
159 PRK03893 putative sialic acid 97.5 0.011 2.4E-07 63.2 20.1 111 270-413 58-168 (496)
160 TIGR00806 rfc RFC reduced fola 97.4 0.019 4E-07 60.9 20.6 85 35-127 114-201 (511)
161 PRK15402 multidrug efflux syst 97.4 0.014 2.9E-07 60.9 19.9 110 271-413 52-161 (406)
162 PRK12382 putative transporter; 97.4 0.0078 1.7E-07 62.3 17.9 119 270-413 54-172 (392)
163 TIGR00885 fucP L-fucose:H+ sym 97.4 0.015 3.2E-07 61.1 20.1 114 270-413 41-154 (410)
164 cd06174 MFS The Major Facilita 97.4 0.0051 1.1E-07 61.6 15.9 112 270-414 37-148 (352)
165 PTZ00207 hypothetical protein; 97.4 0.011 2.3E-07 64.8 19.2 118 307-458 90-208 (591)
166 TIGR01301 GPH_sucrose GPH fami 97.4 0.0062 1.3E-07 65.1 16.8 172 270-458 42-221 (477)
167 TIGR00924 yjdL_sub1_fam amino 97.3 0.0049 1.1E-07 66.1 15.6 142 270-458 51-195 (475)
168 TIGR00898 2A0119 cation transp 97.3 0.0017 3.8E-08 69.7 11.7 131 270-451 130-260 (505)
169 KOG2816 Predicted transporter 97.3 0.0037 7.9E-08 66.5 13.3 253 58-416 134-393 (463)
170 TIGR00887 2A0109 phosphate:H+ 97.3 0.02 4.3E-07 61.7 19.4 115 271-412 60-174 (502)
171 TIGR00806 rfc RFC reduced fola 97.3 0.056 1.2E-06 57.4 21.7 81 310-413 94-174 (511)
172 KOG2532 Permease of the major 97.3 0.0047 1E-07 65.9 14.0 122 294-456 96-217 (466)
173 PRK11652 emrD multidrug resist 97.2 0.031 6.7E-07 57.9 19.4 111 270-413 46-156 (394)
174 TIGR00903 2A0129 major facilit 97.2 0.015 3.4E-07 60.0 16.7 89 352-456 78-166 (368)
175 TIGR00889 2A0110 nucleoside tr 97.2 0.0007 1.5E-08 71.3 6.7 86 36-127 308-400 (418)
176 PRK10077 xylE D-xylose transpo 97.2 0.0042 9E-08 66.1 12.7 121 271-412 59-179 (479)
177 TIGR00892 2A0113 monocarboxyla 97.2 0.017 3.6E-07 61.5 17.1 135 270-453 57-192 (455)
178 PRK08633 2-acyl-glycerophospho 97.1 0.013 2.7E-07 69.7 17.7 114 270-413 50-163 (1146)
179 PRK09705 cynX putative cyanate 97.1 0.016 3.4E-07 60.4 16.1 110 270-413 47-156 (393)
180 PRK10133 L-fucose transporter; 97.1 0.07 1.5E-06 56.5 21.3 113 270-412 64-176 (438)
181 PRK11195 lysophospholipid tran 97.1 0.017 3.6E-07 60.2 16.1 108 270-413 41-148 (393)
182 TIGR00899 2A0120 sugar efflux 97.1 0.026 5.7E-07 57.6 17.4 139 270-456 36-177 (375)
183 TIGR00897 2A0118 polyol permea 97.1 0.032 6.9E-07 58.2 18.2 114 270-412 51-165 (402)
184 PRK11043 putative transporter; 97.1 0.057 1.2E-06 56.0 19.6 111 270-413 44-154 (401)
185 PRK10489 enterobactin exporter 97.1 0.023 5E-07 59.4 16.8 116 270-413 55-170 (417)
186 KOG2533 Permease of the major 97.0 0.018 3.9E-07 61.8 15.9 96 352-456 133-228 (495)
187 PRK11010 ampG muropeptide tran 97.0 0.098 2.1E-06 56.3 21.7 108 286-413 60-167 (491)
188 COG2271 UhpC Sugar phosphate p 97.0 0.018 4E-07 59.4 14.9 113 306-455 92-206 (448)
189 PRK10207 dipeptide/tripeptide 97.0 0.015 3.3E-07 62.6 14.9 111 273-414 56-168 (489)
190 TIGR00901 2A0125 AmpG-related 97.0 0.062 1.3E-06 54.7 18.6 62 352-413 82-143 (356)
191 COG2270 Permeases of the major 96.9 0.26 5.7E-06 51.1 22.3 56 361-416 349-404 (438)
192 PRK06814 acylglycerophosphoeth 96.9 0.024 5.1E-07 67.5 16.6 63 352-414 107-169 (1140)
193 PRK10642 proline/glycine betai 96.8 0.018 3.9E-07 61.9 13.7 107 285-412 71-177 (490)
194 KOG3626 Organic anion transpor 96.8 0.015 3.2E-07 64.4 12.6 146 307-460 161-348 (735)
195 PF03137 OATP: Organic Anion T 96.8 0.00022 4.7E-09 77.4 -1.6 132 270-412 41-200 (539)
196 PLN00028 nitrate transmembrane 96.8 0.12 2.5E-06 55.4 19.4 79 310-411 103-181 (476)
197 TIGR00883 2A0106 metabolite-pr 96.7 0.014 2.9E-07 59.7 11.7 91 309-413 66-156 (394)
198 PRK09584 tppB putative tripept 96.7 0.051 1.1E-06 58.7 16.3 115 309-459 89-205 (500)
199 PRK11902 ampG muropeptide tran 96.7 0.077 1.7E-06 55.2 17.2 85 310-413 70-154 (402)
200 PF00083 Sugar_tr: Sugar (and 96.5 9.4E-07 2E-11 93.5 -21.5 84 35-124 101-187 (451)
201 KOG2563 Permease of the major 96.5 0.071 1.5E-06 55.6 14.8 100 353-466 359-461 (480)
202 PF03209 PUCC: PUCC protein; 96.5 0.27 5.9E-06 50.8 18.8 98 307-413 49-149 (403)
203 PRK10406 alpha-ketoglutarate t 96.4 0.22 4.8E-06 52.4 18.4 109 284-413 76-184 (432)
204 KOG4686 Predicted sugar transp 96.4 0.08 1.7E-06 52.0 13.4 97 358-466 357-453 (459)
205 TIGR00792 gph sugar (Glycoside 96.3 0.043 9.2E-07 57.5 12.4 119 271-411 39-158 (437)
206 TIGR00896 CynX cyanate transpo 96.3 0.15 3.3E-06 51.8 16.1 109 270-413 38-146 (355)
207 PRK15034 nitrate/nitrite trans 96.1 0.44 9.4E-06 50.8 18.9 88 292-404 91-178 (462)
208 PF05977 MFS_3: Transmembrane 96.1 0.26 5.6E-06 53.5 17.4 116 270-413 48-163 (524)
209 PRK15011 sugar efflux transpor 96.1 0.49 1.1E-05 49.1 18.8 90 352-456 104-195 (393)
210 PRK09952 shikimate transporter 96.1 0.098 2.1E-06 55.3 13.6 111 282-413 75-185 (438)
211 PF06609 TRI12: Fungal trichot 95.9 0.29 6.3E-06 53.6 16.7 136 269-453 80-215 (599)
212 KOG0254 Predicted transporter 95.8 0.19 4.1E-06 54.3 14.7 110 270-412 92-201 (513)
213 TIGR00882 2A0105 oligosacchari 95.8 0.39 8.5E-06 49.7 16.5 116 270-413 41-157 (396)
214 KOG2615 Permease of the major 95.7 0.036 7.7E-07 56.6 7.7 82 310-414 100-181 (451)
215 PRK09528 lacY galactoside perm 95.5 0.0097 2.1E-07 62.4 3.4 85 36-126 315-400 (420)
216 PRK15462 dipeptide/tripeptide 95.5 0.67 1.4E-05 49.9 17.1 113 310-458 78-192 (493)
217 PRK15075 citrate-proton sympor 95.5 0.65 1.4E-05 48.9 17.0 104 285-412 70-176 (434)
218 KOG0569 Permease of the major 95.0 0.26 5.6E-06 52.6 12.1 58 352-409 115-172 (485)
219 KOG0252 Inorganic phosphate tr 94.7 0.056 1.2E-06 56.5 5.9 94 28-130 136-244 (538)
220 PF11700 ATG22: Vacuole efflux 94.7 0.081 1.8E-06 56.7 7.5 89 34-128 378-467 (477)
221 TIGR01272 gluP glucose/galacto 94.7 0.27 6E-06 49.5 11.0 62 352-413 9-70 (310)
222 PRK09669 putative symporter Ya 94.5 0.067 1.4E-06 56.6 6.3 74 35-108 318-392 (444)
223 KOG2325 Predicted transporter/ 94.5 0.96 2.1E-05 48.2 14.7 57 358-414 393-449 (488)
224 PF00854 PTR2: POT family; In 94.5 0.24 5.3E-06 51.1 10.3 124 310-461 3-129 (372)
225 TIGR00902 2A0127 phenyl propri 94.4 1.2 2.6E-05 45.9 15.4 60 352-413 93-152 (382)
226 KOG1237 H+/oligopeptide sympor 94.4 0.24 5.2E-06 54.2 10.2 214 36-326 59-274 (571)
227 PRK09848 glucuronide transport 94.3 0.066 1.4E-06 56.7 5.7 91 35-125 318-424 (448)
228 PRK11462 putative transporter; 94.3 1.5 3.2E-05 46.8 16.0 85 309-409 81-166 (460)
229 COG0738 FucP Fucose permease [ 94.1 3.2 7E-05 43.0 17.0 87 307-412 77-163 (422)
230 PRK10429 melibiose:sodium symp 94.0 0.85 1.8E-05 48.7 13.5 82 310-407 79-161 (473)
231 PF05978 UNC-93: Ion channel r 93.8 4.8 0.0001 36.2 17.0 62 352-413 88-149 (156)
232 PF13347 MFS_2: MFS/sugar tran 93.3 0.47 1E-05 49.8 10.0 116 280-411 42-162 (428)
233 TIGR02718 sider_RhtX_FptX side 93.2 5.2 0.00011 41.2 17.3 85 353-452 97-181 (390)
234 PRK11128 putative 3-phenylprop 93.0 2.4 5.1E-05 43.7 14.4 60 352-413 93-152 (382)
235 PF00083 Sugar_tr: Sugar (and 92.0 0.0025 5.3E-08 67.4 -9.7 61 352-412 101-161 (451)
236 COG2211 MelB Na+/melibiose sym 91.8 5.9 0.00013 42.2 15.5 98 350-458 109-207 (467)
237 PF02487 CLN3: CLN3 protein; 91.7 2.2 4.7E-05 44.6 12.0 81 306-413 87-167 (402)
238 PF03825 Nuc_H_symport: Nucleo 91.4 0.32 6.9E-06 50.9 5.7 85 40-130 305-396 (400)
239 PF06813 Nodulin-like: Nodulin 91.1 2.2 4.8E-05 41.6 10.7 119 307-457 65-183 (250)
240 KOG0255 Synaptic vesicle trans 91.0 2.1 4.6E-05 46.2 11.8 84 352-453 170-253 (521)
241 TIGR00939 2a57 Equilibrative N 90.7 4 8.6E-05 43.3 13.1 124 306-455 73-196 (437)
242 PF03092 BT1: BT1 family; Int 90.6 2.3 5E-05 45.0 11.2 85 310-413 61-148 (433)
243 COG2807 CynX Cyanate permease 90.4 9.5 0.00021 39.2 14.7 62 352-414 98-159 (395)
244 COG2223 NarK Nitrate/nitrite t 89.0 5.1 0.00011 41.7 11.8 120 265-413 44-163 (417)
245 KOG2504 Monocarboxylate transp 88.2 0.39 8.6E-06 51.9 3.3 89 35-129 387-476 (509)
246 KOG0252 Inorganic phosphate tr 88.0 1.2 2.6E-05 46.9 6.4 150 267-451 81-238 (538)
247 KOG4255 Uncharacterized conser 87.6 34 0.00074 34.6 18.1 97 352-459 112-215 (439)
248 PF03137 OATP: Organic Anion T 86.8 0.17 3.7E-06 55.1 -0.5 93 35-133 140-254 (539)
249 COG3104 PTR2 Dipeptide/tripept 86.5 1.1 2.5E-05 47.4 5.4 116 310-460 94-211 (498)
250 KOG4686 Predicted sugar transp 85.9 1.1 2.3E-05 44.4 4.5 82 36-123 352-436 (459)
251 PF01770 Folate_carrier: Reduc 85.3 39 0.00084 35.5 15.9 61 352-413 93-153 (412)
252 KOG2816 Predicted transporter 84.9 37 0.00081 36.3 16.0 76 366-456 125-200 (463)
253 PF06963 FPN1: Ferroportin1 (F 84.4 60 0.0013 34.4 18.6 63 351-413 354-416 (432)
254 TIGR00788 fbt folate/biopterin 83.1 21 0.00045 38.1 13.4 58 355-413 122-182 (468)
255 KOG3574 Acetyl-CoA transporter 82.4 67 0.0015 33.5 17.4 59 355-413 371-430 (510)
256 PF05631 DUF791: Protein of un 81.6 58 0.0013 33.4 15.1 95 34-129 119-216 (354)
257 KOG0637 Sucrose transporter an 80.8 6.5 0.00014 41.5 8.0 164 224-410 32-200 (498)
258 PF01306 LacY_symp: LacY proto 79.5 21 0.00045 37.5 11.4 23 270-292 46-68 (412)
259 KOG0253 Synaptic vesicle trans 78.3 91 0.002 32.6 19.6 84 35-126 165-249 (528)
260 PF01891 CbiM: Cobalt uptake s 77.0 45 0.00098 31.3 12.0 100 273-384 105-204 (205)
261 KOG1479 Nucleoside transporter 73.4 94 0.002 32.5 14.0 85 354-453 118-202 (406)
262 PF13000 Acatn: Acetyl-coenzym 71.3 32 0.0007 36.9 10.2 51 358-412 127-177 (544)
263 TIGR00769 AAA ADP/ATP carrier 71.1 1.5E+02 0.0033 31.8 20.9 53 361-413 133-189 (472)
264 KOG3574 Acetyl-CoA transporter 69.3 45 0.00098 34.7 10.3 154 279-454 79-235 (510)
265 PF15050 SCIMP: SCIMP protein 68.9 3.6 7.9E-05 34.6 2.1 35 434-468 6-45 (133)
266 PF03219 TLC: TLC ATP/ADP tran 67.3 1.9E+02 0.0041 31.3 18.7 54 361-414 148-205 (491)
267 COG0477 ProP Permeases of the 64.8 16 0.00035 34.4 6.3 79 35-118 93-174 (338)
268 PF02487 CLN3: CLN3 protein; 62.8 2E+02 0.0044 30.1 19.9 62 352-413 334-395 (402)
269 KOG4332 Predicted sugar transp 62.0 1.7E+02 0.0038 29.1 15.4 42 357-398 348-389 (454)
270 PF14007 YtpI: YtpI-like prote 57.4 22 0.00047 28.7 4.6 53 84-137 34-86 (89)
271 TIGR00123 cbiM cobalamin biosy 57.2 1.4E+02 0.0029 28.4 10.8 101 273-386 108-212 (214)
272 PF06963 FPN1: Ferroportin1 (F 56.9 2.7E+02 0.0058 29.6 15.7 26 267-292 38-63 (432)
273 PF06123 CreD: Inner membrane 54.2 1.8E+02 0.0039 30.8 12.0 19 313-331 300-318 (430)
274 PRK08319 cobalt transport prot 54.1 1.4E+02 0.0029 28.6 10.3 32 357-388 183-214 (224)
275 PRK11715 inner membrane protei 53.1 1.9E+02 0.0042 30.6 12.0 19 313-331 306-324 (436)
276 KOG3762 Predicted transporter 51.2 9.5 0.00021 41.2 2.0 93 35-132 458-550 (618)
277 PRK07331 cobalt transport prot 50.4 1.8E+02 0.0039 29.5 11.0 106 274-387 107-221 (322)
278 COG0477 ProP Permeases of the 50.1 2.2E+02 0.0047 26.5 11.9 62 352-413 93-156 (338)
279 PRK06265 cobalt transport prot 49.3 2.3E+02 0.0049 26.5 11.2 96 274-387 101-198 (199)
280 PF05978 UNC-93: Ion channel r 48.2 31 0.00067 31.0 4.6 58 35-98 88-145 (156)
281 PF01733 Nucleoside_tran: Nucl 45.6 6.9 0.00015 39.3 0.0 81 361-456 5-85 (309)
282 PF06645 SPC12: Microsomal sig 45.1 43 0.00093 26.2 4.4 45 79-126 9-53 (76)
283 COG2270 Permeases of the major 44.8 61 0.0013 34.1 6.7 106 272-406 63-168 (438)
284 KOG4332 Predicted sugar transp 44.3 50 0.0011 32.7 5.6 84 31-124 339-426 (454)
285 TIGR00769 AAA ADP/ATP carrier 43.7 4.4E+02 0.0096 28.3 22.5 53 358-410 381-434 (472)
286 PF06679 DUF1180: Protein of u 42.5 41 0.00089 30.5 4.4 26 435-460 96-121 (163)
287 COG1585 Membrane protein impli 42.1 1.6E+02 0.0035 25.9 8.1 20 351-371 4-23 (140)
288 PRK11909 cobalt transport prot 40.1 3.5E+02 0.0075 26.0 11.3 34 353-386 183-217 (230)
289 PF03219 TLC: TLC ATP/ADP tran 39.2 67 0.0014 34.7 6.2 70 50-124 296-366 (491)
290 PF06027 DUF914: Eukaryotic pr 38.7 4.2E+02 0.0091 27.0 11.6 26 86-112 14-45 (334)
291 PF10731 Anophelin: Thrombin i 34.8 83 0.0018 23.2 4.1 29 445-473 12-40 (65)
292 COG3202 ATP/ADP translocase [E 34.0 6.3E+02 0.014 27.3 17.6 53 361-413 152-208 (509)
293 KOG3098 Uncharacterized conser 33.9 3.5E+02 0.0076 28.9 10.5 65 352-416 101-165 (461)
294 PF13042 DUF3902: Protein of u 33.6 3.5E+02 0.0075 24.1 12.7 75 306-395 2-76 (161)
295 PF12606 RELT: Tumour necrosis 32.3 72 0.0016 22.8 3.4 15 452-466 21-35 (50)
296 KOG4112 Signal peptidase subun 32.3 2E+02 0.0042 23.4 6.2 21 393-413 27-47 (101)
297 PF07857 DUF1632: CEO family ( 32.0 2.9E+02 0.0063 27.0 8.8 43 355-409 57-99 (254)
298 PF06813 Nodulin-like: Nodulin 31.4 4.9E+02 0.011 25.2 10.4 83 35-124 95-177 (250)
299 PRK10929 putative mechanosensi 30.4 1E+03 0.022 28.6 15.2 75 223-298 780-860 (1109)
300 COG3715 ManY Phosphotransferas 29.9 1.7E+02 0.0038 28.6 6.8 23 363-385 181-203 (265)
301 PRK10921 twin-arginine protein 29.5 5.4E+02 0.012 25.1 19.8 28 354-381 154-181 (258)
302 TIGR00819 ydaH p-Aminobenzoyl- 28.0 8.1E+02 0.018 26.6 13.5 39 364-402 138-176 (513)
303 COG3817 Predicted membrane pro 27.5 5.9E+02 0.013 24.9 11.6 50 350-400 163-216 (313)
304 PF03806 ABG_transport: AbgT p 27.1 6.3E+02 0.014 27.3 10.9 27 432-458 200-226 (502)
305 PF11151 DUF2929: Protein of u 27.1 2.4E+02 0.0051 20.7 5.5 36 82-117 6-41 (57)
306 COG2978 AbgT Putative p-aminob 26.2 96 0.0021 32.8 4.5 29 432-460 211-239 (516)
307 KOG0637 Sucrose transporter an 25.2 59 0.0013 34.6 2.8 65 33-102 139-203 (498)
308 KOG3810 Micronutrient transpor 24.8 8.1E+02 0.018 25.5 11.0 94 352-454 325-420 (433)
309 PRK15049 L-asparagine permease 24.4 9E+02 0.019 25.9 12.6 14 75-88 105-118 (499)
310 PHA03281 envelope glycoprotein 24.4 88 0.0019 33.6 3.9 63 434-496 557-629 (642)
311 KOG2927 Membrane component of 23.7 1.6E+02 0.0034 30.1 5.3 53 350-412 185-237 (372)
312 TIGR00910 2A0307_GadC glutamat 23.4 9.1E+02 0.02 26.0 11.8 11 79-89 83-93 (507)
313 PF03547 Mem_trans: Membrane t 23.0 8.1E+02 0.018 24.9 11.2 37 352-389 60-96 (385)
314 PRK04125 murein hydrolase regu 21.8 2.2E+02 0.0048 25.1 5.4 14 469-482 125-138 (141)
315 PF03419 Peptidase_U4: Sporula 21.6 7.9E+02 0.017 24.3 15.3 35 287-324 15-49 (293)
316 PRK02463 OxaA-like protein pre 21.4 6.9E+02 0.015 25.1 9.6 25 101-125 52-76 (307)
317 COG3462 Predicted membrane pro 20.8 3.5E+02 0.0076 22.7 5.9 29 459-487 76-108 (117)
318 PF00939 Na_sulph_symp: Sodium 20.6 3.9E+02 0.0084 28.4 8.2 17 473-489 255-271 (471)
319 PF07672 MFS_Mycoplasma: Mycop 20.3 47 0.001 32.5 1.0 61 75-135 3-68 (267)
320 PF01102 Glycophorin_A: Glycop 20.1 1.2E+02 0.0025 26.1 3.2 14 435-448 66-79 (122)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-66 Score=555.47 Aligned_cols=452 Identities=46% Similarity=0.795 Sum_probs=404.5
Q ss_pred hhhHHHHHHhhCCCCCCCCC---CCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHH
Q 010589 3 QGLVAITLSAVLPGLRPPPC---PTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNF 79 (506)
Q Consensus 3 ~g~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~ 79 (506)
+|+++|++++..+.++|..| ..+..|++|...+...+|.++.++++|+|+.|||+.++++|||++.+++++.++.++
T Consensus 116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~f 195 (571)
T KOG1237|consen 116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSF 195 (571)
T ss_pred HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccc
Confidence 58999999999999999998 345789999999999999999999999999999999999999998777666678899
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcccc
Q 010589 80 FNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAI 159 (506)
Q Consensus 80 f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~ 159 (506)
|+|||+.+|+|.+++.++..|+|++.||.++|+++++.|++++++|+.+++.|++.+|.++|.+.+.||++++.++++..
T Consensus 196 FnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~ 275 (571)
T KOG1237|consen 196 FNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAV 275 (571)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCcccccccCCcccccccccccccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 010589 160 VPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILL 239 (506)
Q Consensus 160 ~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif 239 (506)
.+.+.+.. +.... ......+++.++++|++++..+.+...+...+||++|+.++|||.|+++|++|+|...++|
T Consensus 276 ~~~~~~~~-~~~~~-----~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~ 349 (571)
T KOG1237|consen 276 VSLDPEEL-YYDCT-----DSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIY 349 (571)
T ss_pred CCCcchhc-ccccc-----ccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHH
Confidence 66543211 11000 0012244677899999998876544445567899999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHhccCCCCcceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHH
Q 010589 240 VTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINI 319 (506)
Q Consensus 240 ~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~ 319 (506)
|+++.|+.|.++.|+.+||++++..|++|+++++.+..+.++++.|++|++++|+.||.++++.++++++||++|++++.
T Consensus 350 ~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si 429 (571)
T KOG1237|consen 350 STVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSI 429 (571)
T ss_pred HHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHH
Confidence 99999999999999999999998339999999999999999999999999999999999987778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHH
Q 010589 320 LATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAIS 399 (506)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~a 399 (506)
++|..++++|.+|++.+.+. ....+++|++||+|||+++|+||++.+++++||+|+|||++|||+.+++|+++.+
T Consensus 430 ~sm~~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a 504 (571)
T KOG1237|consen 430 LSMAVAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVA 504 (571)
T ss_pred HHHHHHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999887651 1234589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccccCcc
Q 010589 400 MGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEE 465 (506)
Q Consensus 400 ig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~ 465 (506)
+|++++..++.++...+...++|++..|+|++|+++|||+++.+..++.+.|+.++++|++++.++
T Consensus 505 ~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 505 VGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 999999999999998874322799934999999999999999999999999999999998886543
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-52 Score=426.08 Aligned_cols=368 Identities=19% Similarity=0.309 Sum_probs=282.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
++..+++++++|++|+|++|||++++++|||+++|| |||.+|++||+++|+|++++|++++++++++|||.+|+++
T Consensus 116 ~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a 191 (498)
T COG3104 116 GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA 191 (498)
T ss_pred cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 578899999999999999999999999999999997 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecC--CCCCchhH------HHHHHHHHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLK--PGGSPLTR------LTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~--p~~~pl~~------~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
+++|.++++.|++++|++...+ ++.+|.+. ...++......- .+ .+...
T Consensus 192 avGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-------------~~l~~ 248 (498)
T COG3104 192 AVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL----------LT-------------LLLNQ 248 (498)
T ss_pred HHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH----------HH-------------HHHHH
Confidence 9999999999999998887653 23333211 000000000000 00 00000
Q ss_pred cchhh-hhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCc
Q 010589 187 NQFKW-LDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHS 264 (506)
Q Consensus 187 ~~~~~-l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~g 264 (506)
+..+. +....+.....+ -.....| .+.+ +||||+++.+++++..++||++|+|++|.+.+|+ +++|++.. |
T Consensus 249 ~~~~~~~~~~~i~~~~~~--~~~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g 321 (498)
T COG3104 249 NTFSGVLLVISILIAIIY--FAEAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-G 321 (498)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-c
Confidence 00000 000000000000 0000011 1233 8899999999999999999999999999888776 67788855 7
Q ss_pred ceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 010589 265 FKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDD 344 (506)
Q Consensus 265 f~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~ 344 (506)
+++|++|+|++||++|++++|+++++|+|+.++. ++| ++..|+++|++++++|++++....... +..
T Consensus 322 ~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~--~~p--s~~~KFalGl~l~g~~fl~l~~~~~~~---~~~------ 388 (498)
T COG3104 322 FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN--KQP--STPIKFALGLILAGLGFLILLLAGIWF---GGP------ 388 (498)
T ss_pred eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--CCC--CcchHHHHHHHHHHHHHHHHHHHHHhh---cCC------
Confidence 9999999999999999999999999999988774 444 899999999999999999988764321 111
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCC
Q 010589 345 PKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLP 424 (506)
Q Consensus 345 ~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~ 424 (506)
...+|+||++++|+++++||+|+||+|+|+++++||++++|++||.|+++.++|+.+++.+..+.....
T Consensus 389 ---~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~-------- 457 (498)
T COG3104 389 ---SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD-------- 457 (498)
T ss_pred ---CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc--------
Confidence 226899999999999999999999999999999999999999999999999999999998887433100
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 425 DRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 425 ~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
+ ..+......+|+.++..+++..++.+...|+.++.
T Consensus 458 ~-~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~ 493 (498)
T COG3104 458 P-AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRM 493 (498)
T ss_pred h-hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 0 11222347889999999999999999888876543
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=6.3e-43 Score=380.95 Aligned_cols=362 Identities=27% Similarity=0.519 Sum_probs=299.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc-------cc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV-------GW 107 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~-------g~ 107 (506)
+...++++++++++|+|++|||++++++|||+++++ ++|+++|+||||++|+|+++++++++++++++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 456688999999999999999999999999987542 47999999999999999999999999998654 69
Q ss_pred chhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCccccccccccccccc
Q 010589 108 GLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTN 187 (506)
Q Consensus 108 ~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~ 187 (506)
+++|++++++|++++++|..++|+|++.+|.++++.++.++++.+.+++......+ .
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-----------------------~ 217 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-----------------------W 217 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----------------------c
Confidence 99999999999999999999999998888888988888899988887643221110 0
Q ss_pred chhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCccee
Q 010589 188 QFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKI 267 (506)
Q Consensus 188 ~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~i 267 (506)
..+|+|++... ..++++||+|++++++++++..++||+.|+|+.|.+.+|+.+||++++ ++++
T Consensus 218 ~~~~ld~a~~~----------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~i 280 (654)
T TIGR00926 218 PLHWLDYAKDK----------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEI 280 (654)
T ss_pred chhHHHHhccc----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEec
Confidence 13466665421 124678999999999999999999999999999999999999998887 8999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Q 010589 268 PPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVA----------- 336 (506)
Q Consensus 268 p~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~----------- 336 (506)
|+++++++|++.++++.|++++.++|.++|++. ++++++|+++|++++++++++++++|.++++..
T Consensus 281 p~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~ 357 (654)
T TIGR00926 281 QPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFL 357 (654)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEE
Confidence 999999999999999999999989999887642 248999999999999999999999998765300
Q ss_pred ------------------------------h-------------h-------------------c-------------C-
Q 010589 337 ------------------------------A-------------N-------------------H-------------H- 340 (506)
Q Consensus 337 ------------------------------~-------------~-------------------~-------------g- 340 (506)
. . . +
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (654)
T TIGR00926 358 QVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKI 437 (654)
T ss_pred EEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCc
Confidence 0 0 0 0
Q ss_pred ---C------C------------------------C----C---------------------------------------
Q 010589 341 ---L------L------------------------D----D--------------------------------------- 344 (506)
Q Consensus 341 ---~------~------------------------~----~--------------------------------------- 344 (506)
+ . + +
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (654)
T TIGR00926 438 SYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDR 517 (654)
T ss_pred eEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeeccc
Confidence 0 0 0 0
Q ss_pred -------------------------CC--------------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 345 -------------------------PK--------------AIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 345 -------------------------~~--------------~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
++ ...++|+|||+|||++.++||++.+++++|+.+++||++
T Consensus 518 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~ 597 (654)
T TIGR00926 518 IDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPN 597 (654)
T ss_pred ccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHH
Confidence 00 023478899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
||+..+++|.++.++|+.+...+...-... +...-|.+++.++++..++|..+++.|
T Consensus 598 mks~~~a~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 598 MKSVLQALWLLTVAIGNLIVVVIAEFENFS----------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCh----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999987776443221 124557888999999999999988765
No 4
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=9.5e-43 Score=368.04 Aligned_cols=381 Identities=12% Similarity=0.136 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHH
Q 010589 37 GVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAI 116 (506)
Q Consensus 37 ~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai 116 (506)
..+++++.++++|+|+++||.+++++|+|+++|+ +|+++|+++|+++|+|++++|.+++++.+++||+++|+++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3466788889999999999999999999988764 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcceeecCC-CCCchhH--HHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhh
Q 010589 117 GMVMSVLAFVFGSPLYVKLKP-GGSPLTR--LTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLD 193 (506)
Q Consensus 117 ~~~~~li~f~~~~~~~~~~~p-~~~pl~~--~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~ 193 (506)
+|+++++.+++++|.+.+..+ +.+|.++ ..+.+...+---. ... ..........+....+-
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~ 240 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLL---------VAT-------PALITVLFWKEWSVYAL 240 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHH---------HHH-------HHHHHHHHHHHHHHHHH
Confidence 999999999888877654211 1122211 0000000000000 000 00000000000000000
Q ss_pred hhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCcccc
Q 010589 194 KAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASL 272 (506)
Q Consensus 194 ~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~ 272 (506)
......... ...+...+..+.+||||+..++++++..++||+.|+|+.+.+.++ ++++|++++ ||++|++|+
T Consensus 241 ~~~~~~~~~------~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~ 313 (493)
T PRK15462 241 IVATIIGLG------VLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMF 313 (493)
T ss_pred HHHHHHHHH------HHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHH
Confidence 000000000 000000012345889999999999999999999999999876655 488999998 999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
|++||++|+++.|++.++|.++.+| +++| +.+.|+++|++++++|++++.+.... +.++| .+|
T Consensus 314 qslNp~~ii~l~P~~a~lw~~l~~~--~~~~--s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~---------~~s 376 (493)
T PRK15462 314 QSINAFAVMLCGVFLAWVVKESVAG--NRTV--RIWGKFALGLGLMSAGFCILTLSARW----SAMYG---------HSS 376 (493)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHhcC--CCCC--CcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCC---------CcC
Confidence 9999999999999999987666543 3344 89999999999999999998875421 11122 589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccCCCCCcCCCCC--Cc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAI-SMGNYIGTLVVTLVHKYTGSKNNWLPDRN--LN 429 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~-aig~~l~~~l~~~~~~~~~~~~~w~~~~~--ln 429 (506)
++|++..|+++++||++.+|+|+++++++||++++|++||+|+++. ++|+.+++.+.+.....+.. ++.+ -.
T Consensus 377 ~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~ 451 (493)
T PRK15462 377 LPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD-----ASGAINYS 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----ccccccch
Confidence 9999999999999999999999999999999999999999999955 89999999998877532100 0000 01
Q ss_pred ccchhHHHHHHHHHHHHH-H-HHHHHhhhccccccCccc
Q 010589 430 RGRLEHYYWLVSGIQVIN-L-VYYVICAWFYTYKPLEEV 466 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~-~-~i~~~~~~~y~~~~~~~~ 466 (506)
...+..+|..++..+++. + +.++.+-.-+|+|||...
T Consensus 452 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (493)
T PRK15462 452 INAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRALA 490 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 124677888888777666 4 444444556677777644
No 5
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=6.6e-45 Score=376.38 Aligned_cols=357 Identities=37% Similarity=0.615 Sum_probs=245.4
Q ss_pred CchhhHHHHHHhhCCCCCCCCCCCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHH
Q 010589 1 MSQGLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFF 80 (506)
Q Consensus 1 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f 80 (506)
+++|+++|++++..+.. +.+.+.+.+++||+++++|+|++|||++++++|||++++ +++|+++|
T Consensus 11 ~~~G~~ll~l~~~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~~~~~~~F 74 (372)
T PF00854_consen 11 YLLGHVLLTLSAIPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---DSRRDSFF 74 (372)
T ss_dssp HHHHHHH--HHHTSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---TTHHHHHH
T ss_pred HHHHHHHhHHHHhcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---hhhhhhhH
Confidence 35799999999955554 335678999999999999999999999999999999874 24899999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhcCcceeec-CCCCCchhH-HHHHHHHHHHhccc
Q 010589 81 NWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKL-KPGGSPLTR-LTQVIVAAFKKRKA 158 (506)
Q Consensus 81 ~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~-~p~~~pl~~-~~~vl~~a~~~~~~ 158 (506)
+||||++|+|+++++++++|+++++||+++|++++++|++++++|++++++|++. +|.++++.+ ..+++..+.+++..
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKL 154 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999987 678888887 44555555555444
Q ss_pred cCCCCcccccccCCcccccccccccccccchhhhhhhhccccCccCCCCCCCccc-ccccccHHHHHHHHHHHHHHHHHH
Q 010589 159 IVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWR-LATVHRVEELKSIIRMLPVWAAGI 237 (506)
Q Consensus 159 ~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~-~~~~~~ve~~k~~~~~l~l~~~~i 237 (506)
..+......++.... .............+.+..... ....|. .++++++|+.|.+.+.++.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i 221 (372)
T PF00854_consen 155 AVPKGSSWLDWALFQ------YSERSIFGIIVFIRAAVIFFP-------EIFFWALFCQVQRVEELKALIRFLPIFLFWI 221 (372)
T ss_dssp CH-HHHHHHHHHHHH------HCCCCCCCCCCHHHHHHHHCC-------CHHHHTTTSSTTTHHHCCHHHCHHHCCCHHH
T ss_pred ccccchHHHHHhhhh------hhhhhhhhhhhhccchhhhhh-------hhhhcccCCccceeeeeeeeeeccccCeEEE
Confidence 332111100000000 000000000000110110000 001121 134677888888888889888888
Q ss_pred HHHHHHhhhhhHHHHHHHHhccCCCCc-ceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHH
Q 010589 238 LLVTASSHQHSFTIQQARTMNTHLTHS-FKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFA 316 (506)
Q Consensus 238 if~~~~~q~~s~~~~~~~~~~~~~~~g-f~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~i 316 (506)
+|+..+.|..+....|..++|+.++ + +++|+++++++|++++++++|++|++++|+.|+ +++ .+++.|+++|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~--~~~--~~~~~k~~~G~~ 296 (372)
T PF00854_consen 222 FYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR--GIQ--PSPPQKFGIGMV 296 (372)
T ss_dssp HHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-H
T ss_pred EeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--ccc--chhhhhhhHHHH
Confidence 8888888888777888888888887 6 999999999999999999999999999999983 333 389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHH
Q 010589 317 INILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWI 396 (506)
Q Consensus 317 l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l 396 (506)
++.+++++.+.+|.+|...+.++| ..+.+|+++.|++++++|+++++++++.+++.+|+++++.+||+|+.
T Consensus 297 ~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~ 367 (372)
T PF00854_consen 297 FAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFA 367 (372)
T ss_dssp HHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 999999999999987776555544 56679999999999999999999999988888888888888888887
Q ss_pred HHHH
Q 010589 397 AISM 400 (506)
Q Consensus 397 ~~ai 400 (506)
..+.
T Consensus 368 ~~~~ 371 (372)
T PF00854_consen 368 LSAF 371 (372)
T ss_dssp HH--
T ss_pred Hhcc
Confidence 7654
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=2.9e-37 Score=329.75 Aligned_cols=364 Identities=12% Similarity=0.179 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHH
Q 010589 38 VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIG 117 (506)
Q Consensus 38 ~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~ 117 (506)
.++++++++++|+|+++||..++++|+|+++++ ||+++|+++|+++|+|+++||.++|++.+++|||++|++++++
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 466889999999999999999999999987653 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcceeecC--CCCCchhHHHHHHH---------HHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 118 MVMSVLAFVFGSPLYVKLK--PGGSPLTRLTQVIV---------AAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 118 ~~~~li~f~~~~~~~~~~~--p~~~pl~~~~~vl~---------~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
++++++.+.++++.+++.+ |+++|... .+.+. ......... .... .+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~------------------ 240 (489)
T PRK10207 183 LIIALLVYFACRGMVKDIGSEPDHKPMSF-SKLLLVLLGSVVMIFVCAWLMHN-VEVA--NL------------------ 240 (489)
T ss_pred HHHHHHHHHHcchhhcccCCCCCccchhh-hhHHHHHHHHHHHHHHHHHHHhh-hhHH--HH------------------
Confidence 9999998888877665432 32322211 01000 000000000 0000 00
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HhccCCCCcc
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQAR-TMNTHLTHSF 265 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~-~~~~~~~~gf 265 (506)
.+....+.... ...++..+. +..+++|.+..+.+++..++||+.|+|+.+.+.++.+ ++|++.. |+
T Consensus 241 ----~~~~~~~i~~~-------~f~~~~~~~-~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~ 307 (489)
T PRK10207 241 ----VLIVLSIVVTI-------IFFREAFKL-DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GF 307 (489)
T ss_pred ----HHHHHHHHHHH-------HHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ce
Confidence 00000000000 000000111 2345677777888888899999999999887776665 6777766 89
Q ss_pred eeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010589 266 KIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP 345 (506)
Q Consensus 266 ~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 345 (506)
++|++++|++|++.++++.|+.++++.++-+| ..+.++.+|+++|++++++|++++++.+... +..++
T Consensus 308 ~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r----~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~~----- 375 (489)
T PRK10207 308 SINPVSFQALNPFWVVVASPILAGIYTHLGSK----GKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQG----- 375 (489)
T ss_pred EECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCC-----
Confidence 99999999999999999999999865444333 2234899999999999999998776544210 11111
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCC
Q 010589 346 KAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPD 425 (506)
Q Consensus 346 ~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~ 425 (506)
.+|+||+++.|++.|+||++.+|++++++++.+|++++|++||+|+++.++|+.+|+.+++.+..... ..-+.
T Consensus 376 ----~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~---~~~~~ 448 (489)
T PRK10207 376 ----LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN---ITDPL 448 (489)
T ss_pred ----ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cccch
Confidence 47899999999999999999999999999999999999999999999999999999999987753210 00000
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 426 RNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 426 ~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
.....+..+|..+++.+++++++++++.|++++.
T Consensus 449 --~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 449 --ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred --hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112467899999999999999999988887554
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=9.9e-37 Score=324.98 Aligned_cols=361 Identities=13% Similarity=0.198 Sum_probs=265.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++++.++++|.|+++|+..++++|+++++++ ++|+++|+++|+++|+|+++||.+++++.+++||+++|.++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 356677889999999999999999999999987642 26899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHH-----H--HHHHH----HHHhccccCCCCcccccccCCccccccccccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRL-----T--QVIVA----AFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~-----~--~vl~~----a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l 183 (506)
++.++++++++++.++.+++.++++++.+.. . +.+.. ..+... ..... +.. ...
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~----------~~~ 242 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAW-LMHHV----VIA----------NIL 242 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHH-HHhcc----HHH----------HHH
Confidence 9999999888888887776544333332110 0 00000 000000 00000 000 000
Q ss_pred ccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHhccCCC
Q 010589 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTI-QQARTMNTHLT 262 (506)
Q Consensus 184 ~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~-~~~~~~~~~~~ 262 (506)
......+..++... ...+| ..+.+|+++..+++++++..++||++|+|+.+.+. ++++++|++++
T Consensus 243 -----~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~ 308 (475)
T TIGR00924 243 -----LMTVTLAVIIFFFR----LAFKP-----RLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML 308 (475)
T ss_pred -----HHHHHHHHHHHHHH----HHHhc-----cCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 00000000000000 00001 11224455666789999999999999999998765 45677998887
Q ss_pred CcceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010589 263 HSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLL 342 (506)
Q Consensus 263 ~gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~ 342 (506)
++++|+++++++|++.++++.|++++++.++.|| +++ .+...|+++|++++++|++.++++.. .+.++
T Consensus 309 -~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~--~~~--~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~~--- 376 (475)
T TIGR00924 309 -GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK--GKD--PTTPLKFTLGMLFCGASFLTFAASIW----FADAG--- 376 (475)
T ss_pred -ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC--CCC--CCcHHHHHHHHHHHHHHHHHHHHHHh----hcCCC---
Confidence 8999999999999999999999999876655554 222 27888999999999999999887631 11111
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 010589 343 DDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNW 422 (506)
Q Consensus 343 ~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w 422 (506)
.++|+||++++|+++|+||++.+|++++++++++|+++||+++|+|.+..++|+.+++.+........
T Consensus 377 ------~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~------ 444 (475)
T TIGR00924 377 ------GLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ------ 444 (475)
T ss_pred ------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 25899999999999999999999999999999999999999999999999999999999887664321
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 423 LPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 423 ~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
....+|..+++++++.+++++++.|++++
T Consensus 445 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 445 ---------GVTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred ---------chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13677888888888889988888887653
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=4.3e-36 Score=321.95 Aligned_cols=364 Identities=14% Similarity=0.220 Sum_probs=263.7
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
.+.+++++.++++|.|+++|+..++++|+|+++++ +|+++++++|+++|+|+++||.+++++.+++||+++|.+++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45577888999999999999999999999986642 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeec--CCCCCchhHH------HHHHHHHHHhcc-ccCCCCcccccccCCcccccccccccccc
Q 010589 116 IGMVMSVLAFVFGSPLYVKL--KPGGSPLTRL------TQVIVAAFKKRK-AIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 116 i~~~~~li~f~~~~~~~~~~--~p~~~pl~~~------~~vl~~a~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
+.++++++.+++.++.+++. +|+.+|.... ..+......... ...++. ... .
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------~--- 248 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEI----ARM------------A--- 248 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchH----HHH------------H---
Confidence 99999998887776655433 2322222110 000000000000 000000 000 0
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCcc
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHSF 265 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~gf 265 (506)
........... .....+ +.+.+|+|+.+..+++++..++||++|.|+.+.+..|+ +++|++.. |+
T Consensus 249 --~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~ 314 (500)
T PRK09584 249 --LGVVALGIVVI----------FGKEAF-AMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GI 314 (500)
T ss_pred --HHHHHHHHHHH----------HHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ce
Confidence 00000000000 000001 12335677777778888999999999999999888776 45777776 89
Q ss_pred eeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010589 266 KIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP 345 (506)
Q Consensus 266 ~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 345 (506)
.+|+++++++|++.++++.|+.++++ +|+.++. ++.+|+++|++++++|++.+++... .+.++
T Consensus 315 ~i~~~~~~s~n~i~iil~~p~~~~~~----~~l~~r~---~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~~------ 377 (500)
T PRK09584 315 AVEPEQYQALNPFWIMIGSPILAAIY----NKMGDRL---PMPHKFAIGMVLCSGAFLVLPLGAK----FANDA------ 377 (500)
T ss_pred EECHHHHHHHhHHHHHHHHHHHHHHH----HHhCcCC---CcHHHHHHHHHHHHHHHHHHHHHHH----hcCCC------
Confidence 99999999999999999999999854 4443332 5889999999999999999877541 11112
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCC
Q 010589 346 KAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPD 425 (506)
Q Consensus 346 ~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~ 425 (506)
..+|+||++++|+++|+||++++|++++++++++|+++||++||+|+++.++|+.+++.+...+..... ..
T Consensus 378 ---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~-----~~- 448 (500)
T PRK09584 378 ---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN-----VT- 448 (500)
T ss_pred ---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cc-
Confidence 268999999999999999999999999999999999999999999999999999999999876542110 00
Q ss_pred CCCc--ccchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 010589 426 RNLN--RGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPL 463 (506)
Q Consensus 426 ~~ln--~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~ 463 (506)
+.. .+.+..+|..+++++++.+++++++.|++++..+
T Consensus 449 -~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~ 487 (500)
T PRK09584 449 -DPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQ 487 (500)
T ss_pred -cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1235788888898888888888888888765533
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.57 E-value=2.3e-12 Score=135.10 Aligned_cols=299 Identities=13% Similarity=0.024 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...+...+++.|.++++ +|.++.++++++.++|..+|+.+++++.+..+|++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 4566777777788888888888888888888754 5889999999999999999999999998889999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+..+...+ .+++.. ++ ..+.+ +..+.
T Consensus 183 ~~~~~~~~~~~~~l~~----~~~~~~--------------~~--~~~~~--------------------------~~~~~ 216 (417)
T PRK10489 183 AAGTFITLLPLLRLPA----LPPPPQ--------------PR--EHPLR--------------------------SLLAG 216 (417)
T ss_pred HHHHHHHHHHHHhCCC----CCCCCc--------------cc--ccchH--------------------------HHHHH
Confidence 8777766554433221 111100 00 00000 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
.+ .+-..+.+...+ +. ... +..+....+.......+. .+.. . .-.+++..
T Consensus 217 ~~----------------------~~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~p~~~~~~-~g~~-~--~~~g~~~~ 266 (417)
T PRK10489 217 FR----------------------FLLASPVVGGIA-LL--GGL-LTMASAVRVLYPALADEV-WQMG-A--AQIGLLYA 266 (417)
T ss_pred HH----------------------HHHcChHHHHHH-HH--HHH-HHHHHhHHHhhHHHHHhc-cCCC-h--hHhHHHHH
Confidence 00 000001111111 11 111 111111112211111110 1110 0 01234455
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
...+..++..++..+ +.+|. .+.+.+..+.++.+++++..+.. -+++
T Consensus 267 ~~~~g~~ig~~~~~~----l~~~~-------~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~ 313 (417)
T PRK10489 267 AVPLGAALGALTSGW----LAHSA-------RPGLLMLLSTLGSFLAVGLFGLM----------------------PMWI 313 (417)
T ss_pred HHHHHHHHHHHHHHH----hhhcc-------CcchHHHHHHHHHHHHHHHHHcc----------------------chHH
Confidence 555666665555544 22221 12334566777777666554431 1344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
+.+...++.+++.....+...++..+..|++.||..+|++.....+|..+|+.+...+.+. ++ ..
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-------~g--------~~ 378 (417)
T PRK10489 314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-------MT--------PV 378 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-------hc--------hh
Confidence 5566778888998888888889999999999999999999999999999999888777632 21 13
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccC
Q 010589 435 HYYWLVSGIQVINLVYYVICAWFYTYKPL 463 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~~~~~y~~~~~ 463 (506)
..++..++..++..++.....+++|.++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 34555555555555555555555444333
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.46 E-value=7.9e-12 Score=130.66 Aligned_cols=288 Identities=15% Similarity=0.136 Sum_probs=171.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|.+.|...+++.|.++++ +|++++++++.+.++|..+||.+++++. ++||++.|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 4677888888899999999999999999988754 6999999999999999999999999998 78999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++..++..+..++. +++.+ +. +..+ .+..
T Consensus 171 ~~~~~~~~i~~~~~~~~~---~~~~~---------------~~---~~~~-------------------------~~~~- 203 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY---KLSTV---------------RT---PVRE-------------------------GMTR- 203 (400)
T ss_pred HHHHHHHHHHHHHhCCcc---ccccc---------------ch---hhHH-------------------------HHHH-
Confidence 877666554433322210 00000 00 0000 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
. ..+ |+++.. .+....++..+.|.........++. .+ . ..-.+++..
T Consensus 204 ----------------~--------~~~-~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~---~~-~-~~~~g~l~~ 250 (400)
T PRK11646 204 ----------------V--------LRD-KRFVTY---VLTLTGYYMLAVQVMLMLPIMVNDI---AG-S-PSAVKWMYA 250 (400)
T ss_pred ----------------H--------HcC-chHHHH---HHHHHHHHHHHHHHHHhhhhhHHhh---cC-C-chHHHHHHH
Confidence 0 001 112211 1112223333333322222211111 11 0 001133344
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
++.+..+.+.....+ +..|+. +..+++..|.++.+++++..+... +.+
T Consensus 251 ~~~~~~~~~~~~~~~----~~~~r~------~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~ 298 (400)
T PRK11646 251 IEACLSLTLLYPIAR----WSEKRF------RLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQ 298 (400)
T ss_pred HHHHHHHHHHHHHHH----HHHHhc------chhHHHHHHHHHHHHHHHHHHHhh----------------------hHH
Confidence 444433332222233 222211 233456777777777766554421 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
+.+...++.++|+....|...+.+.+.+|++.||.++|++.+...+|..+|+.+.+.+.+...+ .+ ...
T Consensus 299 ~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~---------~~--~~~ 367 (400)
T PRK11646 299 QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA---------LN--QPE 367 (400)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh---------cC--Ccc
Confidence 4555567889999999999999999999999999999999999999999999888877643210 00 114
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010589 435 HYYWLVSGIQVINLVYYV 452 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~ 452 (506)
..|+..++++++..+...
T Consensus 368 ~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 368 LPWMMLGIIGLITLLALY 385 (400)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 555555556665555543
No 11
>PRK03545 putative arabinose transporter; Provisional
Probab=99.44 E-value=3.5e-11 Score=125.05 Aligned_cols=284 Identities=16% Similarity=0.165 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.+.+-|...+++.|.++++ +|+++++++..+.++|..++|.+++.+.+++||++.|++.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 5777888888999999988899999999998764 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++..+......++ +|+.++ .+ .+ +.
T Consensus 170 ~~~~~l~~~~~~~~~~~----~~~~~~--------------------~~----~~-----------------------~~ 198 (390)
T PRK03545 170 GGGALITLLLLIKLLPL----LPSEHS--------------------GS----LK-----------------------SL 198 (390)
T ss_pred HHHHHHHHHHHHHhCCC----CCCCCc--------------------ch----HH-----------------------HH
Confidence 87666655443332221 111000 00 00 00
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTI-QQARTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~-~~~~~~~~~~~~gf~ip~~~~~ 273 (506)
.. . + .+ |.+...+.+ ..++...+....+... +..+....+. ...+++.
T Consensus 199 ~~--------------~---~-----~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~g~s~-----~~~~~~~ 247 (390)
T PRK03545 199 PL--------------L---F-----RR-PALVSLYLL---TVVVVTAHFTAYSYIEPFVQQVAGLSE-----NFATLLL 247 (390)
T ss_pred HH--------------H---H-----hC-cHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cHHHHHH
Confidence 00 0 0 00 112111111 1111111111112111 1111111110 0113333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
....+..++..++..+ +.+|. ..+++..+..+.++++...... ..+.
T Consensus 248 ~~~~~~~~~g~~~~g~----l~dr~--------~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~ 294 (390)
T PRK03545 248 LLFGGAGIIGSVLFSR----LGNRH--------PSGFLLIAIALLLVCLLLLLPA---------------------ANSE 294 (390)
T ss_pred HHHHHHHHHHHHHHHH----Hhhcc--------chhHHHHHHHHHHHHHHHHHHH---------------------hchH
Confidence 4444444555554444 33332 1234666666666655433221 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccch
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRL 433 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~ 433 (506)
++++...++.+++.....+...+.+.+.+|+ .++.++|++.....+|..+|+.+.+.+.+. + .+
T Consensus 295 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-------~--------g~ 358 (390)
T PRK03545 295 WHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLH-------L--------GL 358 (390)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--------Ch
Confidence 5666778889999988888888888888885 789999999988899999999888777632 1 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 010589 434 EHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 434 ~~~~~~la~l~~l~~~i~~~~~ 455 (506)
...|+..+++.++++++++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 359 SSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777777777777765544
No 12
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.42 E-value=8.3e-12 Score=132.77 Aligned_cols=308 Identities=15% Similarity=0.063 Sum_probs=164.0
Q ss_pred hHHHHHH-HHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 36 LGVLYIS-LLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 36 ~~~~~~~-l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
.+.+++. ..+.++|.|..-+...+.+.+.++ + +|.++.++++.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-R------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-h------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 4445443 356688888765555566677663 2 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+..++.++.-.. ++..+... +.. ..+... ... . ...+..+.
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~----------~~~-~~~~~~----~~~-----------~---~~~~~~~~ 228 (455)
T TIGR00892 180 GGLLLHCCVCGALMRPVGPS--QRVSKSKS----------KEG-LPPDGS----TKK-----------L---SKKSTAEK 228 (455)
T ss_pred HHHHHHHHHHHHHhCCCCcc--cccccccc----------ccc-CCCCCc----ccc-----------c---cccchhhh
Confidence 88777665554444331000 00000000 000 000000 000 0 00000000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
.. ....+++++ + |.++ .......+....+....+.+..... +.... . ...+.+.+
T Consensus 229 ~~-----------~~~~~~~~~-----~-~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s-~--~~~g~~~~ 283 (455)
T TIGR00892 229 IN-----------RFLDFSLFT-----H-RGFL---VYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD-E--YEAAFLLS 283 (455)
T ss_pred hh-----------hhcchHHhc-----C-chHH---HHHHHHHHHHHHccchHHHHHHHHH--HcCCC-H--HHHHHHHH
Confidence 00 000000000 0 1222 1112222222333222222221111 11111 0 11234555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
+..+..++..|+..++ .+|...+. .....+..++++.+++++..... .+.+
T Consensus 284 ~~~~~~~~~~~~~g~l----~d~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~----------------------~~~~ 334 (455)
T TIGR00892 284 IIGFVDIFARPSCGLI----AGLKWIRP---HVQYLFSFALLFNGLTHLLCALA----------------------GDYT 334 (455)
T ss_pred HHHHHHHHHHHHHHHH----hcccccCH---HHHHHHHHHHHHHHHHHHHHHHh----------------------chHH
Confidence 5666666666666653 22211110 11112333444444444332221 2455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
+++...++.+++.....+...+.+.+.+|++.++..+|++.....+|+.+++.+...+.+.. . ++.
T Consensus 335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-------g-------~~~ 400 (455)
T TIGR00892 335 GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT-------K-------NYK 400 (455)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-------C-------Ccc
Confidence 66777788999999999999999999999999999999999999999999998887665321 0 134
Q ss_pred HHHHHHHHHHHHHHH
Q 010589 435 HYYWLVSGIQVINLV 449 (506)
Q Consensus 435 ~~~~~la~l~~l~~~ 449 (506)
..|+..+++.+++++
T Consensus 401 ~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 401 YIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHHHHHHH
Confidence 556666666555544
No 13
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.40 E-value=1.3e-10 Score=119.04 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...+...+++.|.++++ +|+++++++..+.++|..+++.+++++.++.+|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5778888999999999999999999999998754 6999999999999999999999999998999999999988
Q ss_pred HHHHHHHHHHHHh
Q 010589 115 AIGMVMSVLAFVF 127 (506)
Q Consensus 115 ai~~~~~li~f~~ 127 (506)
++..++..+..++
T Consensus 155 ~~~~~~~~~~~~~ 167 (399)
T TIGR00893 155 GVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHHHHHHhhh
Confidence 8776665554433
No 14
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.40 E-value=2.1e-10 Score=119.81 Aligned_cols=269 Identities=12% Similarity=0.044 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+...+...+.+.|.++++ +|.+++++.+...++|..++|.+++++.++.+|++.|++.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 4666778888889999988888888899998754 5778888888888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+......++. ++.+ +++ .+ .. +..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~----~~~~--------------~~~----~~----~~--------------------~~~~~ 207 (406)
T PRK15402 174 AALAALSFFGLWRAMPET----AGRV--------------GEK----LS----LK--------------------ELGRD 207 (406)
T ss_pred HHHHHHHHHHHHHhCCCC----Cccc--------------ccc----cc----HH--------------------HHHHH
Confidence 877776655433322211 1000 000 00 00 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~~ 273 (506)
.+. . + .+ |+++.. .+...+....+....+..... .+.. ... .. ..++..
T Consensus 208 ~~~-------------~---~-----~~-~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~--g~~-~~--~~g~~~ 257 (406)
T PRK15402 208 YKL-------------V---L-----KN-RRFVAG---ALALGLVSLPLLAWIALSPVILISGE--QLS-SY--EYGLLQ 257 (406)
T ss_pred HHH-------------H---H-----cC-cHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHh--CCC-HH--HHHHHH
Confidence 000 0 0 00 112211 111111111111111111111 1111 110 00 011222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
..-.+..++..++..+ +.+|. ...+.+.+|.++.+++.+..+.... .. ..++
T Consensus 258 ~~~~~~~~~g~~~~g~----l~~r~-------~~~~~~~~~~~~~~~g~~~~~~~~~-------~~----------~~~~ 309 (406)
T PRK15402 258 VPVFGALIAGNLTLAR----LTSRR-------PLRSLIRMGLWPMVAGLLLAALATV-------IS----------SHAY 309 (406)
T ss_pred HHHHHHHHHHHHHHHH----HHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHH-------cc----------cccH
Confidence 2222233333444333 33332 2333466777777777776655320 00 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
+|++...++.++|+....+........ ++++.+|.+.+++.+...++..+|+.+.+.+..
T Consensus 310 ~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 310 LWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 778888899999999988877776654 455899999999999999999999888877653
No 15
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.39 E-value=4.8e-11 Score=124.20 Aligned_cols=293 Identities=14% Similarity=0.109 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.+. -|...+.+.|+++++ +|+.+++++..+.++|.++++.+.+++.+..+|++.|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 466777788888887664 466777788887654 6899999999999999999999999999889999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++..+..+...++- .++..++ +. .+ . .+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~--~~~~~~~--------------~~----~~----~-----------------------~~~ 211 (408)
T PRK09874 179 ASVLFLCFLVTLFCIREN--FQPVSKK--------------EM----LH----M-----------------------REV 211 (408)
T ss_pred HHHHHHHHHHHHHHhccC--cccccch--------------hh----hH----H-----------------------HHH
Confidence 887766655433322210 0011000 00 00 0 000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
... . ++ ++++. .+.....++........+.+.....+...+.. ....-.+.+..
T Consensus 212 ~~~-----------------~-----~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~ 265 (408)
T PRK09874 212 VTS-----------------L-----KN-PKLVL--SLFVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIAS 265 (408)
T ss_pred HHh-----------------C-----cC-CchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHH
Confidence 000 0 00 11111 11111122222222222222211111111100 00000112222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
+..+..++..|+..+ +.+|.+ +.+.+..++++.+++++..... .+.+
T Consensus 266 ~~~l~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 312 (408)
T PRK09874 266 VPGVAALLSAPRLGK----LGDRIG-------PEKILITALIFSVLLLIPMSFV----------------------QTPL 312 (408)
T ss_pred HHHHHHHHHHHHHHH----HHhccc-------cchhHHHHHHHHHHHHHHHHHh----------------------ccHH
Confidence 333444445554444 344432 2233555666555555443321 1344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
++....++.++++....|...+.+.+.+|++.+|..++.+.....+|..+|+.+...+.+. . .+.
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-------~--------g~~ 377 (408)
T PRK09874 313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-------Y--------GFR 377 (408)
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-------c--------chh
Confidence 4556668889999999999999999999999999999999999999999999888776531 1 135
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 010589 435 HYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~~~ 455 (506)
..|++.+++++++.++.+...
T Consensus 378 ~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 378 AVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777766655443
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.39 E-value=3e-10 Score=118.36 Aligned_cols=85 Identities=19% Similarity=0.331 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...|...+++.|.++++ +|++++++++.+.++|..+++.+++.+.+..+|++.|.+.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 4677788889999999999999999999999754 6999999999999999999999999998999999999987
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..++..++.
T Consensus 176 ~~~~~~~~~~~ 186 (406)
T PRK11551 176 GVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHH
Confidence 77655554443
No 17
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.37 E-value=3.9e-10 Score=121.35 Aligned_cols=266 Identities=16% Similarity=0.142 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+++.+++...+++++.+++.|...+++.++.+++ +..++.++.....|+.-++||.++|.+....|-.+.|.+.
T Consensus 102 ~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~in 175 (524)
T PF05977_consen 102 SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLIN 175 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 6788888889999999999999999999999865 5899999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++++.+...++.. +++..|-++..+-++.. .+++
T Consensus 176 alsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G------------------------------------~ryv-- 214 (524)
T PF05977_consen 176 ALSFLISILALLRWKPPP---PPSSLPRERFFSALREG------------------------------------LRYV-- 214 (524)
T ss_pred HHHHHHHHHHHHHccccc---cccccchhhhhhhHHHH------------------------------------HHHH--
Confidence 998888766554443321 11111100000000000 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~gf~ip~~~~~ 273 (506)
...|.+..++.. ..+|.....-....+.... +..+..- .-.+.+.
T Consensus 215 --------------------------~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~~~l~~~a-----~~yGll~ 260 (524)
T PF05977_consen 215 --------------------------RSSPPLRSVLLR---SFLFNLFASAVWALLPLFARDVLGGGA-----SGYGLLL 260 (524)
T ss_pred --------------------------hcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHHHHhCCcH-----HHHHHHH
Confidence 000112211111 1112211111112222222 2222110 0113455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
+.-.+..++..-+..+ .+|.. +..+-+..+.++.+++++..++. -+.
T Consensus 261 a~~gvGai~Gal~~~~-----l~~~~------~~~~lv~~~~~~~a~~~~~lal~----------------------~~~ 307 (524)
T PF05977_consen 261 AAFGVGAILGALLLPR-----LRRRL------SSRRLVLLASLLFALALLLLALS----------------------PSF 307 (524)
T ss_pred HHHHHHHHHHHHHHHH-----hhccc------CcchhhHHHHHHHHHHHHHHhcc----------------------hHH
Confidence 5555555555444333 33321 23344667777777777666552 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
|..++..++.|++.........+.+-+.+|++++|+.+++|......+..+|..+.+.+.+
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788999999999999999999999999999999999998888888888887777663
No 18
>PRK10504 putative transporter; Provisional
Probab=99.37 E-value=3.1e-10 Score=120.88 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...|...+++.|.++++ +|.++++++..+.++|..++|.+++++.++.||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 4666788899999999999999999999988654 6899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
....+++.+.....
T Consensus 171 ~~~~~l~~~~~~~~ 184 (471)
T PRK10504 171 IPVGIIGAIATLML 184 (471)
T ss_pred HHHHHHHHHHHHHh
Confidence 77666655554443
No 19
>PRK10054 putative transporter; Provisional
Probab=99.36 E-value=4.3e-11 Score=124.89 Aligned_cols=262 Identities=13% Similarity=0.076 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+.+.+.+.|...+...|.++++ +|.+++++++...|+|..++|.+++++.+ .||+..|.++
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 3455555566667777777888888888888754 69999999999999999999999999875 7999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++++...+..++. ++++.++-++ . . +.
T Consensus 168 ~~~~~i~~i~~~~~~~~~--~~~~~~~~~~------------~----------~------------------------~~ 199 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRS--EKAIATETGS------------V----------W------------------------SP 199 (395)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccchhh------------h----------h------------------------hh
Confidence 887777655433222211 1111000000 0 0 00
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh-ccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTM-NTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~-~~~~~~gf~ip~~~~~ 273 (506)
... . + .|+++. +.....++...+....+.....-... +.... +...+.+.
T Consensus 200 ~~~-----------------~-----~-~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~ 250 (395)
T PRK10054 200 SVL-----------------L-----Q-DKALLW---FTCSGFLASFVSGAFASCISQYVMVVADSDFA---EKVVAVVL 250 (395)
T ss_pred hhh-----------------c-----c-CceehH---HHHHHHHHHHHHHHhhhhHHHHHHHhcccchH---HHHHHHHH
Confidence 000 0 0 011211 11111221211211111111110111 11110 00113344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
..+.+..+.+.++..+ +.+|. ++.+.+..|+++.+++++...... .++
T Consensus 251 ~~~~~~~~~~~~~~g~----~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~ 298 (395)
T PRK10054 251 PVNAAMVVSLQYSVGR----RLNAA-------NIRPLMTAGTLCFVIGLVGFIFSG---------------------NSL 298 (395)
T ss_pred HhhhhheeeehhHHHH----HHccC-------CchhHHHHHHHHHHHHHHHHHHcc---------------------hHH
Confidence 5555555555444433 23332 234456677777777766554311 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+....++.++||....|...+.+.+.+|+++++.+.+... ...+|..+|+.+...+.
T Consensus 299 ~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~ 357 (395)
T PRK10054 299 LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL 357 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH
Confidence 334456789999999999999999999999999999988654 34467777777776665
No 20
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.36 E-value=2e-10 Score=115.79 Aligned_cols=262 Identities=17% Similarity=0.210 Sum_probs=181.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.+...+...+++.|.++++ +|...+++++.+.++|..+++.+.+.+.++.+|++.|.+.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4677888899999999999999999999999875 5999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+...+..| .
T Consensus 160 ~~~~~~~~~~~~~~~~-------------~-------------------------------------------------- 176 (352)
T cd06174 160 AILGLLLALLLLFLLR-------------L-------------------------------------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------H--------------------------------------------------
Confidence 8877776655433210 0
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~~ 273 (506)
++ .+.+....++..+.......... .+..+.+ . ...+++.
T Consensus 177 -------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~ 217 (352)
T cd06174 177 -------------------------------LL---LLALAFFLLSFGYYGLLTYLPLYLQEVLGLS---A--AEAGLLL 217 (352)
T ss_pred -------------------------------HH---HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---H--HHHHHHH
Confidence 00 01111111111111111111111 1111110 0 1124556
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQ-RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~-ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
....+..++..++..++ .+|.+ +.+ .+.++.++..++++..... .+
T Consensus 218 ~~~~~~~~i~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~----------------------~~ 264 (352)
T cd06174 218 SLFGLGGILGALLGGLL----SDRLG-------RRRLLLLIGLLLAALGLLLLALA----------------------PS 264 (352)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHH-------hhhHHHHHHHHHHHHHHHHHHHh----------------------cc
Confidence 66677777777766653 44432 122 4677888888877766542 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGR 432 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~ 432 (506)
.++.....++.++++....+...+++.+..|++.|+..+|++.....++..+++.+.....+.. +
T Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~---------------~ 329 (352)
T cd06174 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG---------------G 329 (352)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------C
Confidence 5677888999999999999999999999999999999999999999999999998887765311 1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010589 433 LEHYYWLVSGIQVINLVYYV 452 (506)
Q Consensus 433 ~~~~~~~la~l~~l~~~i~~ 452 (506)
+...|++.+++.+++.+++.
T Consensus 330 ~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 330 YGGVFLILAALALLAALLLL 349 (352)
T ss_pred cchHHHHHHHHHHHHHHHhe
Confidence 24556666777766665543
No 21
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.36 E-value=1.8e-10 Score=117.16 Aligned_cols=269 Identities=11% Similarity=0.039 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.|...|...+++.|.++++ +|+++++++..+.++|.++++.+++++.++.||++.|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5788888999999999999999999999999765 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+..+..+.+ ++++.+ ..+.+++ ... ...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~---~~~~~~----------------~~~~~~~----~~~-------------------~~~~~ 202 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP---ELAASE----------------IQALSNA----VLR-------------------DTREG 202 (365)
T ss_pred HHHHHHHHHHHHhcccc---cCCCcc----------------ccccchh----HHH-------------------HHHhH
Confidence 87776665544333211 000000 0000000 000 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHH-HHhccCCCCcceeCcccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQH-SFTIQQA-RTMNTHLTHSFKIPPASL 272 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~-s~~~~~~-~~~~~~~~~gf~ip~~~~ 272 (506)
.+ +.-..|.+. .+.....++...+.... +...... +..+.+ . ...+.+
T Consensus 203 ~~----------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~ 252 (365)
T TIGR00900 203 IK----------------------FVLKNPLLR---TLLLLALLFNLVFAPAIVALFPYVQSKYLGRG---S--THYGWV 252 (365)
T ss_pred HH----------------------HHHcCcHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc---h--HHHHHH
Confidence 00 000001122 12222223333222222 1212111 111111 0 012334
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
.....+..++..++..+ +.+|.+ +.+-+..++++.+++++...... + +
T Consensus 253 ~~~~~~~~~~~~~~~~~----l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~ 300 (365)
T TIGR00900 253 LAAFGLGALLGALLLGL----LGRYFK-------RMALMTGAIFVIGLAILVVGLTP--------------------P-N 300 (365)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhc-------hhHHHHHHHHHHHHHHHHHHhhc--------------------h-h
Confidence 44455555555555554 333321 22234455666666655544311 2 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.++.+...++.+++.....+...++..+..|++.||..+|++.....++..+++.+...+.
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777899999999999999999999999999999999999999999999988877664
No 22
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.35 E-value=9.3e-10 Score=114.51 Aligned_cols=277 Identities=13% Similarity=0.071 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+...+++...+.++|.+...++..+.+.|.++++ +|.++++++..+.++|..+|+.+++++.+++||+..|.++
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4556778888999999999999999999998755 5889999999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++.++ +.++. |+..+ ++ .++.
T Consensus 185 ~~~~~~~~~---~~~~~-----~~~~~-------------~~----~~~~------------------------------ 209 (399)
T PRK05122 185 MLLALLGLL---LARPR-----PAVPP-------------VK----GERL------------------------------ 209 (399)
T ss_pred HHHHHHHHH---HHhcC-----CCCCC-------------CC----ccch------------------------------
Confidence 654433322 22211 11100 00 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
++ .+..|+.......+ .++...+....+....... +.+.. .......
T Consensus 210 ----------------~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~ 256 (399)
T PRK05122 210 ----------------PF-------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--ARGWD-----GAALALT 256 (399)
T ss_pred ----------------hH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hcccc-----cchHHHH
Confidence 00 01111111111111 1111122222222111111 11110 1122333
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
...+..++..++..+ +.+|.+ +.+.+..+.++.+++++..... .+.+
T Consensus 257 ~~~~~~~~~~~~~g~----l~~r~~-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 303 (399)
T PRK05122 257 LFGVAFVGARLLFGN----LINRLG-------GLRVAIVSLLVEILGLLLLWLA----------------------PSPW 303 (399)
T ss_pred HHHHHHHHHHHHHHH----HHHHhc-------cHHHHHHHHHHHHHHHHHHHHh----------------------ccHH
Confidence 444444444455444 344432 2234566777777776555431 1345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
++++..++.+++.....|.....+.+..|++.||..+|++.....+|..+++.+...+.+. . ++.
T Consensus 304 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-------~--------g~~ 368 (399)
T PRK05122 304 MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-------F--------GYP 368 (399)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c--------CHH
Confidence 5667788999999988888888888999999999999999999999988887776655421 1 135
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010589 435 HYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~ 453 (506)
..|+..+++++++.++...
T Consensus 369 ~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 369 SIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666665544443
No 23
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.33 E-value=4.8e-10 Score=116.33 Aligned_cols=281 Identities=14% Similarity=0.063 Sum_probs=169.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+.+.+..-|...++..+ +. ++|+..++......++|..++|.+++++.+++||+..|.+.
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 56777777777888887777877776532 21 25778899999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++.++.+ ...+. .+|+++ +. . .... .. ..+.+
T Consensus 165 ~~~~~~~~~~~-~~~~~---~~~~~~---------------~~-~-~~~~-----~~-----------------~~~~~- 200 (382)
T TIGR00902 165 TAGLAFMLIGF-LIKPT---IPPKDA---------------IP-E-DESQ-----GD-----------------SAFIA- 200 (382)
T ss_pred HHHHHHHHHHH-HcCCC---CCCCcc---------------cc-c-cccc-----cc-----------------hhHHH-
Confidence 65533333222 22211 011100 00 0 0000 00 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
++ . .|+++ .+.+...+++..+.+..+.....-++. ... . .-.+.+..
T Consensus 201 -------------------~l-----~-~~~~~---~~l~~~~l~~~~~~~~~~~~~~~l~~~--g~s-~--~~~g~l~~ 247 (382)
T TIGR00902 201 -------------------LL-----K-NPMNL---RFLAAVCLIQGAHAAYYGFSAIYWQAA--GIS-A--SATGLLWG 247 (382)
T ss_pred -------------------HH-----c-ChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCC-H--hHHHHHHH
Confidence 00 0 12232 222333444455555444332221111 110 0 01133444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
++.+..++..++.++ +.+|. ++.+-+.+|.++.++.++..+.. .++|
T Consensus 248 ~~~~~~i~~~~~~~~----l~~r~-------g~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~ 294 (382)
T TIGR00902 248 IGVLAEIIIFAFSNK----LFQNC-------SARDLLLISAIACVGRWAIIGAI----------------------EAFP 294 (382)
T ss_pred HHHHHHHHHHHHhHH----HHhhC-------CHHHHHHHHHHHHHHHHHHHHhH----------------------hhHH
Confidence 555555555555554 34443 34445778888888887766552 2455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccch
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYW-IAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRL 433 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~-l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~ 433 (506)
+++..-+++++++.+..+....++.+. |++.++..++++. ...++|..+++.+++.+.+. +.
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-------~g--------- 357 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-------LG--------- 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc---------
Confidence 555555999999999999999999988 9999999999986 57788888888888877642 21
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010589 434 EHYYWLVSGIQVINLVY 450 (506)
Q Consensus 434 ~~~~~~la~l~~l~~~i 450 (506)
...|+..++++++++++
T Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35577777777655433
No 24
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.33 E-value=1.4e-10 Score=122.18 Aligned_cols=88 Identities=17% Similarity=0.309 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHh---hhhccccccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVV---VYIQDNVGWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~---~~l~~~~g~~~~F 111 (506)
..+.++++..+.++|.|...+...++++|.++++ +|..++++++.+.++|.++++.++ +.+.+..+|++.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 3567888999999999999999999999999865 599999999999999999999998 7777889999999
Q ss_pred hhhHHHHHHHHHHHHhc
Q 010589 112 GIPAIGMVMSVLAFVFG 128 (506)
Q Consensus 112 ~i~ai~~~~~li~f~~~ 128 (506)
++.++..++.++..++.
T Consensus 200 ~~~~~~~~~~~~~~~~l 216 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFFL 216 (481)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99776666555444433
No 25
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.30 E-value=4.1e-10 Score=121.13 Aligned_cols=312 Identities=13% Similarity=0.057 Sum_probs=165.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|+..|...+.+.+.+.+++ +|.++++++..+.++|..+||.+++++.+++||++.|++.
T Consensus 93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~ 167 (495)
T PRK14995 93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN 167 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 57888899999999999998888888888875432 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhH-HH-----HHHHHHHHhccccCCCCcccccccCCcccccccccccccccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTR-LT-----QVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQ 188 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~-~~-----~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~ 188 (506)
....++.+++.....+.-...+.+..+... +. -.+..+.+..... ..+. .... .....+... .
T Consensus 168 ~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~----~~~~~~~~~---l 236 (495)
T PRK14995 168 VPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKG-FLSL---WVTS----LTLLTGALL---L 236 (495)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcccc-CCch---HHHH----HHHHHHHHH---H
Confidence 766666555433332221111111111100 00 0011111110000 0000 0000 000000000 0
Q ss_pred hhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeC
Q 010589 189 FKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIP 268 (506)
Q Consensus 189 ~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip 268 (506)
..+..+-. .......++++++. |.+......... ....+.-....+..+-+... ... . ..
T Consensus 237 ~~f~~~e~-------~~~~p~~~~~lf~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~lq~v~-g~s-~--~~ 296 (495)
T PRK14995 237 GLFIRTQL-------AASRPMIDMRLFTH------RIILSGVVMAMT---AMITLVGFELLMAQELQFVH-GLS-P--LE 296 (495)
T ss_pred HHHHHHHh-------cCCCCCcCHHHhCC------cccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc-CCC-H--HH
Confidence 00000000 00001112222221 112111111111 11111100011111111111 100 0 11
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
.+.+.....+...+..|+..+ +.+|.+ +.+-+..|+++.+++++...... .
T Consensus 297 ag~~~~~~~~~~~~~~~~~g~----l~~r~g-------~~~~~~~g~~~~~~~~~~l~~~~---------~--------- 347 (495)
T PRK14995 297 AGMFMLPVMVASGFSGPIAGI----LVSRLG-------LRLVATGGMALSALSFYGLAMTD---------F--------- 347 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHcC-------chHHHHHHHHHHHHHHHHHHHhc---------C---------
Confidence 233444455566666666665 445543 22235668887777776554321 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
..+.++..+..++.|+|-.+..+.....+.+.+|++.++..++++.+...+|..+|..+.+.+
T Consensus 348 -~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 348 -STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred -CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444566778899999999998999999999999999999999999888888877666544
No 26
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.30 E-value=8.8e-10 Score=114.32 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+...|...++..|. . + +|++.++...++.++|..+||.+++++.+++||+..|++.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~-~------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~ 164 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q-K------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL 164 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH-H-h------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 477777778888998999999888777764 2 1 4677788888888999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++..+... ..++ .+|+++ +++. ..+ .. .++.
T Consensus 165 ~~~~~~~~~~~~-~~~~---~~~~~~--------------~~~~--~~~-------~~----------------~~~~-- 199 (382)
T PRK11128 165 TAGVASMLLGQL-LRPT---IMPQGE--------------SRQQ--ESA-------GW----------------PAWK-- 199 (382)
T ss_pred HHHHHHHHHHHH-ccCC---CCCccc--------------cccc--ccc-------cc----------------chHH--
Confidence 765554443322 2211 111110 0000 000 00 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
+.-..|+++.+ .+...+++..+.+..+......++. +.. +-..+.+..
T Consensus 200 ------------------------~i~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~--g~s---~~~~g~~~~ 247 (382)
T PRK11128 200 ------------------------ALLKEPTVWRF---LLCVSLLQGSHAAYYGFSAIYWQAA--GYS---ASTIGYLWS 247 (382)
T ss_pred ------------------------HHHcChhHHHH---HHHHHHHHHHhHhHHHHHHHHHHHC--CCC---HhHHHHHHH
Confidence 00001223222 2222233333333333222221111 110 001244555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
++.+..++..++.++ +.+|. ...+.+.+++++.+++++.++.. .+.|
T Consensus 248 ~~~~~~~~~~~~~g~----l~~r~-------~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~ 294 (382)
T PRK11128 248 LGVVAEVLIFAFSNR----LFRRW-------SARDLLLLSAICGVVRWGLMGST----------------------TALP 294 (382)
T ss_pred HHHHHHHHHHHHHHH----HHHHC-------CHHHHHHHHHHHHHHHHHHHHhh----------------------hhHH
Confidence 666666666565555 44543 23344677777777776655442 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhc
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYW-IAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~-l~~aig~~l~~~l~~~~~~ 414 (506)
+.++..++.++++.+..+....++.++. ++.++.+++++. +..++|..+|+.+.+...+
T Consensus 295 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 295 WLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677789999999999999999988875 445688899876 5667777788877777653
No 27
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.29 E-value=9.8e-10 Score=116.97 Aligned_cols=84 Identities=12% Similarity=0.219 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc-ccchhhhhh
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV-GWGLGFGIP 114 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i~ 114 (506)
.+.+++...+.+++.|..-|.....+.+.++++ +|.+++++++.+.++|..+++.+++++.+.. ||++.|.+.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 556788889999999999999999999998765 6999999999999999999999999999884 999999988
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..++..++.
T Consensus 205 ~~~~~~~~~~~ 215 (465)
T TIGR00894 205 GIVGCAWSLLW 215 (465)
T ss_pred hHHHHHHHHHH
Confidence 87666554443
No 28
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.29 E-value=4.3e-10 Score=132.76 Aligned_cols=281 Identities=12% Similarity=-0.005 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+++.|...+++.|.++++ +|..+++++.++.++|.++||.++|++.+..||++.|.+.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 5788999999999999999999999999999875 5999999999999999999999999999999999999544
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++++++.+...+. ++...+. + .... ... ...+.
T Consensus 181 ~~~~~~~~~~~~~~~~~----~~~~~~~----------------~-~~~~---~~~-------------------~~~~~ 217 (1140)
T PRK06814 181 MGIAVLGWLASLFIPKT----GNAAPDL----------------K-IDRN---IIR-------------------STITL 217 (1140)
T ss_pred HHHHHHHHHHHhhCCCC----CCCCCCC----------------e-eccc---hHH-------------------HHHHH
Confidence 44444444333222211 1110000 0 0000 000 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~gf~ip~~~~~ 273 (506)
.+. +-..|.++ .+.+...+++.++....+.+.... +..+.+- .-.+++.
T Consensus 218 ~~~----------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~-----~~~g~~~ 267 (1140)
T PRK06814 218 LKY----------------------AKADKRIW---LAILGISWFWLVGAVVLSQLPLLAKETLGGDE-----NVATLFL 267 (1140)
T ss_pred HHH----------------------HhcCchHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCch-----HHHHHHH
Confidence 000 00001122 122222333333333223222221 1111110 1124566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC------
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKA------ 347 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~------ 347 (506)
+...+..++...+..++ .+|. ...+.+..|.++.+++.+.+.+.. .+........
T Consensus 268 ~~~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~ 328 (1140)
T PRK06814 268 AVFSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFAS--------SSVPAEPAQLKSILVF 328 (1140)
T ss_pred HHHHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhcc--------cccccccccccchhhh
Confidence 77777777777776663 3322 122335556655555544333310 0000000000
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 348 IIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 348 ~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
....+.|++++.+++.+++..+..+...+++.+.+|++++|.++|++.+...++..+++.+...+.
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 329 LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 001345677788899999999999999999999999999999999999999999999988877765
No 29
>PRK12382 putative transporter; Provisional
Probab=99.28 E-value=3.1e-09 Score=110.35 Aligned_cols=276 Identities=10% Similarity=0.111 Sum_probs=165.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.+..-|...+.+.|.++++ +|.++++++..+.++|..++|.+++++.+++||++.+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 5777888899999999988888888888888754 6999999999999999999999999999989999877654
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
.+..++. +.+.++. |+.++ +++ +.+.
T Consensus 185 ~~~~~~~---~~~~~~~-----~~~~~-------------~~~-~~~~-------------------------------- 210 (392)
T PRK12382 185 MVLPLLA---WAFNGTV-----RKVPA-------------HAG-ERPS-------------------------------- 210 (392)
T ss_pred HHHHHHH---HHHHHhc-----cCCCC-------------Ccc-cCch--------------------------------
Confidence 4432222 2222211 11000 000 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRM-LPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~-l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~ 273 (506)
.+ +..|.+.+. +.+.+....+.. ..+.....-. +... . +.....
T Consensus 211 ----------------~~--------~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~--~~~~----~-~~~~~~ 255 (392)
T PRK12382 211 ----------------LW--------SVVGLIWKPGLGLALQGVGFAV----IGTFVSLYFA--SKGW----A-MAGFTL 255 (392)
T ss_pred ----------------HH--------HHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHH--hcCC----c-hhHHHH
Confidence 00 000111110 001111111111 1111111101 1111 1 112223
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
....+..++..++..+ +.+|.+ +.+.+..+.++.+++++..... -+.
T Consensus 256 ~~~~~~~~~~~~~~g~----l~~r~g-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 302 (392)
T PRK12382 256 TAFGGAFVLMRVLFGW----MPDRFG-------GVKVAIVSLLVETVGLLLLWLA----------------------PTA 302 (392)
T ss_pred HHHHHHHHHHHHHHHH----HHHhcC-------CCeehHHHHHHHHHHHHHHHHc----------------------ccH
Confidence 3344444555555555 344432 2334667777777776654431 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccch
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRL 433 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~ 433 (506)
++.++..++.++++....|.....+.+..|++.||..+|++.....+|+.+++.+...+.+.. .+
T Consensus 303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---------------g~ 367 (392)
T PRK12382 303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---------------GY 367 (392)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------Cc
Confidence 455667788999999888888888889999999999999999999999999998887765321 13
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 010589 434 EHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 434 ~~~~~~la~l~~l~~~i~~~ 453 (506)
...|.+.+++.+++.++.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 368 PSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 55677677766666655543
No 30
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.28 E-value=6.6e-10 Score=118.45 Aligned_cols=311 Identities=12% Similarity=0.091 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...|...+++.|.++++ +|.+++++++.+.++|..++|.+++++.+++||++.|++.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 5677888999999999999999999999999754 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHH--------HHHHHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQ--------VIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~--------vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
++..++..+...+..++.++ ...++...... .+.....+.. .. . +.................
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~-~~-~-----~~~~~~~~~~~~~~~~~~- 232 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGP-ER-G-----WFDSNEILILSITGLVAI- 232 (485)
T ss_pred hHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCC-CC-C-----CCCchHHHHHHHHHHHHH-
Confidence 77666555544333322111 11111111000 0001111100 00 0 000000000000000000
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCcc
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHSF 265 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~gf 265 (506)
..+..+. ... .....++++++. |.+.. ..+...+....+..........- +..+.+ .
T Consensus 233 --~~~~~~~--~~~-----~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s---~- 290 (485)
T TIGR00711 233 --IAFVVWE--LTD-----DNPLVDLRLFKY------RNFTI---GCVYMSLLGLGLYGSFYLLPLYLQQVLGYT---A- 290 (485)
T ss_pred --HHHHHHH--HcC-----CCCccCHHHHcC------CChHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---H-
Confidence 0000000 000 000001111111 11111 11112222222222222222111 111111 0
Q ss_pred eeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010589 266 KIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP 345 (506)
Q Consensus 266 ~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 345 (506)
...+.+.....+..++..|+..++ .+|.+ +.+.+.+|+++.++++++....- .
T Consensus 291 -~~~g~~~~~~~~~~~~~~~~~g~l----~~r~~-------~~~~~~~g~~~~~~~~~~~~~~~--------~------- 343 (485)
T TIGR00711 291 -LQAGLHILPVGLAPMLSSPIAGRM----GDKID-------PRKLVTIGLILYAVGFYWRAFTF--------T------- 343 (485)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH----HhhcC-------cHHHHHHHHHHHHHHHHHHhccC--------C-------
Confidence 012344555666667777776653 34432 22345667777777766554210 0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 346 KAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 346 ~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
...+.++++...++.++|..+..+.....+.+..|++.+|.++|++.....+|..+|..+.+.+.
T Consensus 344 ---~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 344 ---PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 02345566666889999999888877888888899999999999999999999999887766553
No 31
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.27 E-value=4.1e-09 Score=113.25 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc-ccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD-NVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~-~~g~~~~F~i 113 (506)
+.+.+++...+.+++.+...+...++..|.++++ +|.++.++.-++.++|.++++.+.+++.+ ..||+..|++
T Consensus 106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i 179 (491)
T PRK11010 106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL 179 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 5677777788889999999999999999998854 59999999999999999999999999988 4799999999
Q ss_pred hHHHHHHHHHHHH
Q 010589 114 PAIGMVMSVLAFV 126 (506)
Q Consensus 114 ~ai~~~~~li~f~ 126 (506)
.++.+++..+..+
T Consensus 180 ~a~l~ll~~l~~~ 192 (491)
T PRK11010 180 MAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655433
No 32
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.25 E-value=1.4e-09 Score=114.43 Aligned_cols=310 Identities=14% Similarity=0.136 Sum_probs=164.9
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc-------cccccc
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ-------DNVGWG 108 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~-------~~~g~~ 108 (506)
...+++...+..++.+++.+...++..+..++.+ +|++..++-..+.++|.+++..+.+.+. +..||+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 3444455566677778888888888888765432 6889999988999999888766654443 346899
Q ss_pred hhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccc
Q 010589 109 LGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQ 188 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~ 188 (506)
+.|.+.++..++..++.....|+. ++..+. +++ .+.
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~----~~~~~~------------~~~----~~~------------------------ 209 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKER----YSEIPK------------NIE----KKL------------------------ 209 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEec----CCCCCc------------ccc----cCC------------------------
Confidence 988887776666554433332221 110000 000 000
Q ss_pred hhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeC
Q 010589 189 FKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIP 268 (506)
Q Consensus 189 ~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip 268 (506)
+..+..+ ..-..|.++. +.+...+.+..+....+...+.. ....+ . ..-
T Consensus 210 -~~~~~~~----------------------~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~~ 258 (437)
T TIGR00792 210 -SLKQIFK----------------------ALFKNDQLLI---LCLAYLFYNLAFNIKNGVQVYYF---TYVLG-D-PEL 258 (437)
T ss_pred -CHHHHHH----------------------HHhCCHHHHH---HHHHHHHHHHHHHHHcchhheeE---eeecC-C-hHH
Confidence 0000000 0000122222 22222233332222111111111 10111 0 001
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
.+++..+..+..++..|+..+ +.+|.+ ..+.+.+|.++.+++++...+..
T Consensus 259 ~~~~~~~~~i~~ii~~~~~~~----l~~r~g-------~~~~~~~~~~~~~~~~~~~~~~~------------------- 308 (437)
T TIGR00792 259 FSYMGSIAIVAGLIGVLLFPR----LVKKFG-------RKILFAGGILLMVLGYLIFFFAG------------------- 308 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHcc-------------------
Confidence 123444555666666666555 455543 22346677777777766554421
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-------ESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNN 421 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-------~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~ 421 (506)
.+.++.+...++.+++.....+...++..+.+| ++.+|.++|++.+...+|..+++.+...+.+.. +
T Consensus 309 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~----G 382 (437)
T TIGR00792 309 --SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII----G 382 (437)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C
Confidence 133445566788899999889998899888765 667899999999999999999888877665432 1
Q ss_pred cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhh-ccccc
Q 010589 422 WLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAW-FYTYK 461 (506)
Q Consensus 422 w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~-~y~~~ 461 (506)
|..+..-.+.....+.+.+..+.++..++-+++.. +|+-.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~l~ 423 (437)
T TIGR00792 383 YVANAAQSPITLNGIKILMFAVPALFLLLAAIIIGRFYKLT 423 (437)
T ss_pred CCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCc
Confidence 21110001112234444455555555544444443 55443
No 33
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.24 E-value=2.8e-09 Score=111.23 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...|...+++.|.++++ +|+.++++++.+.|+|..++|.+++++.+.+||++.|.+.
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 5788899999999999999999999999998754 6999999999999999999999999999999999999987
Q ss_pred HHHHHHHH
Q 010589 115 AIGMVMSV 122 (506)
Q Consensus 115 ai~~~~~l 122 (506)
++..++.+
T Consensus 181 ~~l~~~~~ 188 (394)
T PRK10213 181 AVMGVLCI 188 (394)
T ss_pred HHHHHHHH
Confidence 76555444
No 34
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.24 E-value=3.9e-09 Score=108.65 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.++|.+...+...+++.|.++++ +|++.+++++.+.++|..+++.+++++.++.+|++.|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4677888888999999999999999999998754 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
++..++..+...+.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 166 SLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHh
Confidence 87766665554443
No 35
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.24 E-value=4.2e-09 Score=111.25 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|..-+...+.+.+.++++ +|+.++++++.+.++|..+++.+++++.+++||++.|.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4666777777788888888898999999998754 6999999999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 010589 115 AIGMVMS 121 (506)
Q Consensus 115 ai~~~~~ 121 (506)
++..++.
T Consensus 184 ~i~~~~~ 190 (434)
T PRK11663 184 GIIAIVV 190 (434)
T ss_pred HHHHHHH
Confidence 7655543
No 36
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.24 E-value=3.1e-10 Score=114.99 Aligned_cols=267 Identities=18% Similarity=0.196 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
.+.++++..+.++|.+...+...+++.|.++++ +|+++++++..+.++|..+++.+++++.+++||++.|.+.+
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 557889999999999999999999999999975 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhhh
Q 010589 116 IGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKA 195 (506)
Q Consensus 116 i~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a 195 (506)
+..+++.++..+..+. .+++.. +..+.+++.. .+.. +.+
T Consensus 159 ~~~~~~~il~~~~~~~---~~~~~~---------------~~~~~~~~~~--~~~~-------------------~~~-- 197 (352)
T PF07690_consen 159 ILSLIAAILFILFLPE---PPPPRE---------------RESPKESESK--KPKP-------------------LKP-- 197 (352)
T ss_dssp HHHHHHHHHHHCCC------STTTT-----------------SSTTTT----HHHC-------------------CCH--
T ss_pred chhhhhhhhHhhhhhh---cccccc---------------cccccccccc--cccc-------------------ccc--
Confidence 9888887654333321 111110 0000000000 0000 000
Q ss_pred hccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCccccch
Q 010589 196 ATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 196 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~~~ 274 (506)
.+ +...+.+.++ .++.....+...+....+..... .+..+.+ + . ...+.+..
T Consensus 198 ---------------~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~--~~~~~~~~ 250 (352)
T PF07690_consen 198 ---------------GF-----KSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS-G-P--SQAGLLFS 250 (352)
T ss_dssp ----------------C-----THHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-T-H--HHHHHHHH
T ss_pred ---------------cc-----ccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhccCCC-H-H--HHHHHHHH
Confidence 00 0111112121 12222222222222222222211 1111111 0 0 11133345
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
+..+..++..++..+ +.+|.+ +.++..+......++.+...+... ..+.+
T Consensus 251 ~~~~~~~~~~~~~~~----l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 300 (352)
T PF07690_consen 251 IFGIVGIIGSLLAGR----LSDRFG-------RRRRLLIAILLLILGALGLLLLPF-------------------SSSPV 300 (352)
T ss_dssp HHHHHHHHHHHHHHH----HHHHTT-------CHHHHHHHHHHHHHHHHHHCCSHH-------------------HCHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHcC-------cHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHH
Confidence 555555555566555 344432 223344444444444433332110 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHH
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGT 406 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~ 406 (506)
|.+...++.+++..+..+...+++.+.+|++.+|.++|++.....+|..+|+
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7777889999999999999999999999999999999999999999998874
No 37
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.23 E-value=6.5e-09 Score=107.95 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.+...+...+++.|.++++ +|.+++++++...++|..++|.+.+++.+..||++.|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 3566777788889999988888889999988754 6999999999999999999999999988889999999988
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..++..+..
T Consensus 164 ~~~~~i~~~~~ 174 (392)
T PRK10473 164 AAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHH
Confidence 87666655543
No 38
>TIGR00895 2A0115 benzoate transport.
Probab=99.22 E-value=4.5e-09 Score=108.25 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...+...+++.|.++++ +|+++++++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 4667788889999999999999999999998754 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
++..++..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6555544443
No 39
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.21 E-value=2.8e-09 Score=109.10 Aligned_cols=262 Identities=16% Similarity=0.079 Sum_probs=150.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc--------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-------- 106 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-------- 106 (506)
+.+.++....+.+++.+...+...+++.|.++++ +|+.+.++...+.++|.++++.+++++..+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 4555555555667888888899999999999654 69999999999999999999999999988888
Q ss_pred cchhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 107 WGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 107 ~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
|+..|.+.++..+++.+..++..|+-.+.++.++ +. ++. .
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~---~~---------~~~----------~------------------ 195 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPK---PL---------TQA----------V------------------ 195 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCcccccch---hH---------HHH----------H------------------
Confidence 9999999988777766554433322000000000 00 000 0
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcce
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFK 266 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ 266 (506)
.+..+ +.-..|...+.+.+.+...++...+.+..+....+..+. .
T Consensus 196 -----~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g------ 240 (356)
T TIGR00901 196 -----LKPIR----------------------EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM--G------ 240 (356)
T ss_pred -----HHHHH----------------------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C------
Confidence 00000 000001111122233333344444444444333222221 1
Q ss_pred eCcccc---chhhH-HHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010589 267 IPPASL---SIFGI-LTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLL 342 (506)
Q Consensus 267 ip~~~~---~~~n~-l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~ 342 (506)
.+++.+ ..... +..++..++..+ +.+|.+ +.+.+.+++++.+++......... ..+.
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~g~~~~g~----l~~r~g-------~~~~l~~~~~~~~~~~~~~~~~~~------~~~~-- 301 (356)
T TIGR00901 241 FSKEEIALVAKINGLLGAILGGLIGGI----IMQPLN-------ILYALLLFGIVQALTNAGFVWLAS------NGHH-- 301 (356)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHH----HHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHh------cCcc--
Confidence 122232 22222 233334333333 344432 334466777777776654443210 0000
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHH
Q 010589 343 DDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAIS 399 (506)
Q Consensus 343 ~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~a 399 (506)
+ +....+.++++...++.++++.+..+...++..+.+|+++||..+|++.....
T Consensus 302 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 302 D---GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred c---ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 0 00012445677778899999999999999999999999999999999877543
No 40
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.21 E-value=4.2e-09 Score=112.24 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVG 106 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g 106 (506)
....++++.++.++|.|+.-|...++++|.++++ +|+.+++++..+..+|.++++.+++.+. +++|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 4566788999999999999999999999999865 5999999999999999999987765442 4579
Q ss_pred cchhhhhhHHHHHHHHHHHHh
Q 010589 107 WGLGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 107 ~~~~F~i~ai~~~~~li~f~~ 127 (506)
|++.|.+.++..++.++..++
T Consensus 193 Wr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 999999887777666554433
No 41
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.21 E-value=2.9e-09 Score=114.04 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.|...+...+++.|.++++ +|..++++++.+.++|..+++.+.+++.+++||++.|.+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 5677888899999999999999999999999764 5899999999999999999999999999999999999875
Q ss_pred HHHHH
Q 010589 115 AIGMV 119 (506)
Q Consensus 115 ai~~~ 119 (506)
++..+
T Consensus 181 ~~~~~ 185 (496)
T PRK03893 181 ILPII 185 (496)
T ss_pred HHHHH
Confidence 54433
No 42
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.21 E-value=1.7e-09 Score=113.40 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...+...+++.|.++++ +|+++.+++..+.++|.++++.+.+++.+.+||++.|+++
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 5778888999999999999999999999998765 5899999999999999999999999999999999999876
Q ss_pred HHHH
Q 010589 115 AIGM 118 (506)
Q Consensus 115 ai~~ 118 (506)
++..
T Consensus 179 ~~~~ 182 (426)
T PRK12307 179 LLPV 182 (426)
T ss_pred HHHH
Confidence 5433
No 43
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.21 E-value=9.4e-09 Score=107.95 Aligned_cols=85 Identities=9% Similarity=0.081 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|..-+...+.+.|.++++ ++.+.++++..+.++|..+||.+++++.++.||++.|.+.
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5677888899999998876666667788888764 5888899999999999999999999999889999999988
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..+++.+..
T Consensus 177 ~~~~~i~~~~~ 187 (413)
T PRK15403 177 AVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHH
Confidence 87766665543
No 44
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.20 E-value=1.2e-08 Score=105.10 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+...+...+++.|.++++ +|.+++++++.+.++|..+++.+++++.+..||++.|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 4566778888889999999999999999988754 5999999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHh
Q 010589 115 AIGMVMSVLAFVF 127 (506)
Q Consensus 115 ai~~~~~li~f~~ 127 (506)
++..++..+...+
T Consensus 152 ~~~~~~~~~~~~~ 164 (377)
T PRK11102 152 ALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666554433
No 45
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.19 E-value=7.7e-09 Score=106.13 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHH--HHHHHHHHHHHHHHHHhhHhhhhccccccchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWN--FFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~--~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~ 112 (506)
+.+.+++...+.+.+.+..-|...++..+..+++ +|.. .+++.+.+.++|..+++.+++++.+++||++.|.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~ 159 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRT------GREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFL 159 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc------chhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHH
Confidence 3555665556666666666677777766665432 2332 3678888899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 010589 113 IPAIGMVMSVLAFVF 127 (506)
Q Consensus 113 i~ai~~~~~li~f~~ 127 (506)
+.++..++..+..++
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 160 TAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988876666555433
No 46
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.18 E-value=1.1e-08 Score=106.52 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc-ccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV-GWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i 113 (506)
+++.++++..+.++|.|..-+...+.+.+.++ + +|..+++++..+.++|..+++.+++++.++. +|+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46678889999999999999999998888875 3 5889999999999999999999999998875 89988765
Q ss_pred hHHHHHHHH
Q 010589 114 PAIGMVMSV 122 (506)
Q Consensus 114 ~ai~~~~~l 122 (506)
.++..++.+
T Consensus 169 ~~~~~~~~~ 177 (393)
T PRK09705 169 WALPAVVAL 177 (393)
T ss_pred HHHHHHHHH
Confidence 554444433
No 47
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.1e-10 Score=119.48 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=79.8
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchhhh
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLGFG 112 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~F~ 112 (506)
.+.|.+.+...+.++|.+.+.|..+++++|.|+++ +|+++|.||||++++|+.+|.+++.++.+.-+ ||++|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 36888999999999999999999999999999876 69999999999999999999999999998766 999999
Q ss_pred hhHHHHHHHHHH-HHhcC
Q 010589 113 IPAIGMVMSVLA-FVFGS 129 (506)
Q Consensus 113 i~ai~~~~~li~-f~~~~ 129 (506)
..++.+++..++ +++.+
T Consensus 193 ~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred eehHHHHHHHHHHHhhcc
Confidence 999988876655 44443
No 48
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.17 E-value=1.6e-08 Score=107.34 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHH-HHHhhHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIAT-LTALTVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i 113 (506)
+.+.+++...+.+++.|...|.......+.++++ +|..++++++.+.++|. ++++++...+....||++.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 4566777778889999998888888888888654 59999999999999986 5566654334344599999998
Q ss_pred hHHHHHHHHHH
Q 010589 114 PAIGMVMSVLA 124 (506)
Q Consensus 114 ~ai~~~~~li~ 124 (506)
.++..++..++
T Consensus 193 ~~~~~~~~~~l 203 (452)
T PRK11273 193 PAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHH
Confidence 87766664433
No 49
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.14 E-value=1.6e-08 Score=105.19 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...+...++..|.++++ ++..+++++..+..+|..++|.+++++.++.||++.|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 4667788888889988887777777888877643 5888899999999999999999999999989999999987
Q ss_pred HHHHHHHHH
Q 010589 115 AIGMVMSVL 123 (506)
Q Consensus 115 ai~~~~~li 123 (506)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 765554433
No 50
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.14 E-value=3.5e-09 Score=108.07 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...+.......+.+++ +|+.+.+++..+.++|.++++.+.+.+.+..||++.|.+.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 567788888888999887777777777666642 5889999999999999988766666666778999999988
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..++..+..
T Consensus 163 ~~~~~~~~~~~ 173 (377)
T TIGR00890 163 GIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHHH
Confidence 87766655543
No 51
>TIGR00898 2A0119 cation transport protein.
Probab=99.12 E-value=2.8e-08 Score=106.88 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.++|.|+..+...+++.|.++++ +|..+.+++..+..+|.++++.++..+.+ |++.|.+.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 5777888999999999999999999999999865 58888999999999999999988777654 99999988
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
++..++..+..++.
T Consensus 250 ~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 250 SLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHHHHHHHHHhc
Confidence 87776665554443
No 52
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.11 E-value=2.1e-08 Score=104.46 Aligned_cols=73 Identities=10% Similarity=0.124 Sum_probs=51.7
Q ss_pred CCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHh
Q 010589 51 GGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 51 G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~ 127 (506)
+...|...++..|..++++ ++...+.++...+.++|..+||.+++++.+++||+..|.+.++..++..+..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 120 STANPQMFALAREHADKTG----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HhhHHHHHHHHHHHhhhcc----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666554321 112334478889999999999999999999999999999888766655544333
No 53
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.10 E-value=5.7e-09 Score=106.56 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHh-hHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTAL-TVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~-~~~~~l~~~~g~~~~F~i 113 (506)
+.+.++++..+.+++.|...|...+++.|.++++ +|+++++++..+.++|..+++ ++.+.+.+..+|++.|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 5677888899999999999999999999999865 589999999999999999999 677778788999999998
Q ss_pred hHHHHHHHHHHHH
Q 010589 114 PAIGMVMSVLAFV 126 (506)
Q Consensus 114 ~ai~~~~~li~f~ 126 (506)
.++..++..++.+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 8776665444433
No 54
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.09 E-value=3.6e-08 Score=102.12 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F 111 (506)
+.+.++++..+.++|.|...|...+.+.+..+++ +|++++++++.+.++|..+|+.+.+++.+...++..+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 5778888899999999998888877777777643 6899999999999999999999999997764444433
No 55
>PRK11043 putative transporter; Provisional
Probab=99.09 E-value=2.3e-08 Score=104.24 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.+...+...+++.|.++++ ++.+.++......++|..++|.+++++.+++||++.|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4667777888888888887788888889988754 5778888888999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 010589 115 AIGMVMSVLAFVF 127 (506)
Q Consensus 115 ai~~~~~li~f~~ 127 (506)
++..++..+..+.
T Consensus 167 ~~~~~~~~~~~~~ 179 (401)
T PRK11043 167 FAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHH
Confidence 7776665554433
No 56
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.09 E-value=2.1e-08 Score=104.00 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...+...+++.|.++++ +|.++++++..+.++|..+++.+++++.+..||++.|.+.
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 5788888999999999988887777777776543 5888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
++..++..+.
T Consensus 164 ~~~~~~~~~~ 173 (382)
T PRK10091 164 AVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHH
Confidence 8766655543
No 57
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.09 E-value=3.1e-08 Score=116.99 Aligned_cols=270 Identities=11% Similarity=0.016 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc--------c-
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN--------V- 105 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~--------~- 105 (506)
+.+.+++..++.+++.|++.|...+++.|.++++ +|+.+++++..+.++|.++|+.+++++.+. .
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 3677888888999999999999999999999865 599999999999999999999999998765 2
Q ss_pred ccchhhhhhHHHHH-HHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccc
Q 010589 106 GWGLGFGIPAIGMV-MSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLV 184 (506)
Q Consensus 106 g~~~~F~i~ai~~~-~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~ 184 (506)
+|.+.+.+.++..+ +++++.+.. +.. |..++. +. ...... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~-------------~~-~~~~~~-----~~------------- 218 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRL-PKV----PAAAPE-------------VF-DKKKYL-----FP------------- 218 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcC-cCC----CCCCcc-------------cc-cccccc-----cH-------------
Confidence 23333333333222 222222222 211 111000 00 000000 00
Q ss_pred cccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCC
Q 010589 185 HTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTH 263 (506)
Q Consensus 185 ~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~ 263 (506)
.......+. .-..+.+. .+.+...+++.......+.+... ......+.
T Consensus 219 ----~~~~~~~~~----------------------l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-- 267 (1146)
T PRK08633 219 ----KLLWRNLKL----------------------LRSDRVLW---LAIIGLSYFWFISQLAQANFPAYAKEVLGLDN-- 267 (1146)
T ss_pred ----HHHHHHHHH----------------------HhcCcHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc--
Confidence 000000000 00001111 11222233333222222222211 11111110
Q ss_pred cceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010589 264 SFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLD 343 (506)
Q Consensus 264 gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~ 343 (506)
....+++.....+..++..++..+ +.+|. ...+.+.+|.++++++++.....
T Consensus 268 --~~~~g~~~~~~~ig~~~g~~~~g~----l~~r~-------~~~~~~~~~~~~~~~~~~~~~~~--------------- 319 (1146)
T PRK08633 268 --TFQVQYLLAASAIGIGIGSLLAGR----LSGRH-------IELGLVPLGALGLALSLFLLPTA--------------- 319 (1146)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HhCCc-------eEccchhHHHHHHHHHHHHHHHh---------------
Confidence 001234445555555555555554 34442 23334566777777666555442
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 344 DPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 344 ~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++..+..+...+++.+.+|++.||.++|+..+...+|..++..++.++.
T Consensus 320 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 320 -------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred -------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667777899999999999999999999999999999999999998888877766665553
No 58
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.07 E-value=4.5e-08 Score=105.15 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccccch
Q 010589 38 VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVGWGL 109 (506)
Q Consensus 38 ~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g~~~ 109 (506)
.+.+...+.++|.|+.-|...++++|.++++ +|+.+.++...+.++|..+|+.+...+. .++|||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 4778889999999999999999999999865 5888888888888888888876554432 2689999
Q ss_pred hhhhhHHHHH
Q 010589 110 GFGIPAIGMV 119 (506)
Q Consensus 110 ~F~i~ai~~~ 119 (506)
.|++.++..+
T Consensus 194 ~f~i~~~~~l 203 (490)
T PRK10642 194 PFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHH
Confidence 9998665433
No 59
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.06 E-value=8.5e-08 Score=100.04 Aligned_cols=261 Identities=15% Similarity=0.147 Sum_probs=148.3
Q ss_pred HHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHH
Q 010589 40 YISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMV 119 (506)
Q Consensus 40 ~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~ 119 (506)
++...+.++|.|++.|...+++.|.++++ +|.++++++....++|..+||.++|++.+. .|+..|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45567889999999999999999999865 699999999999999999999999999874 47777776665555
Q ss_pred HHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhhhhccc
Q 010589 120 MSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVT 199 (506)
Q Consensus 120 ~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~ 199 (506)
++.+.....++. |..++ ++ +.+.....+ .+.+..+.
T Consensus 165 ~~~~~~~~l~~~-----~~~~~-------------~~----~~~~~~~~~--------------------~~~~~~~~-- 200 (393)
T PRK11195 165 LAALFNLFIPRL-----GARRP-------------GQ----SWNPIALLR--------------------DFFHACRV-- 200 (393)
T ss_pred HHHHHHhcCCCC-----ccccc-------------cc----CCCHHHHHH--------------------HHHHHHHH--
Confidence 444333222211 10000 00 000000000 00000000
Q ss_pred cCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCccccchhhHH
Q 010589 200 EGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASLSIFGIL 278 (506)
Q Consensus 200 ~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~~~~n~l 278 (506)
.| ++ |.+.. ......++|.+........... .+.. +.. . ...+.+.....+
T Consensus 201 -----------l~--------~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l--g~s-~--~~~G~~~~~~~~ 252 (393)
T PRK11195 201 -----------LW--------RD-KLGRF---SLAGTTLFWGAGATLRFLVLAWAPVAL--GIT-L--NQPAYLQAVVAI 252 (393)
T ss_pred -----------HH--------hC-chhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC-h--hHHHHHHHHHHH
Confidence 00 00 11111 1111223344333322221111 1111 111 0 112445566667
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHH
Q 010589 279 TMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVP 358 (506)
Q Consensus 279 ~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~ 358 (506)
..++..++.+++ .+|. ...+.+..|+. .++.++..+. ..+.|+.+.
T Consensus 253 g~i~g~~~~~~l----~~~~-------~~~~~~~~g~~-~~~~~~~~~~----------------------~~~~~~~~~ 298 (393)
T PRK11195 253 GIAVGAGAAARL----VTLE-------TVLRVLPAGIL-MGLVVLLMAL----------------------QHSLLPAYP 298 (393)
T ss_pred HHHHHHHHHHHH----hcCC-------cccchHHHHHH-HHHHHHHHHH----------------------HhHHHHHHH
Confidence 777776766552 2221 22334555543 3333222221 124556667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccChhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 359 QYCLHGVAEVFMSVGHLEFLYDQSPESM-RSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 359 ~~~l~~igEl~~sp~gl~~~~~~aP~~~-~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..++.+++..+..+...+.+.+.+|++. +|..+++..+...++..++..+.....
T Consensus 299 ~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 299 LLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7788999988888888888888777766 799999999999999999888877664
No 60
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.06 E-value=8.5e-08 Score=107.06 Aligned_cols=88 Identities=22% Similarity=0.344 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc----------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN---------- 104 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~---------- 104 (506)
+.+.++++.++.++|.|+..|...+++.+.++++ +|+..++++.++..+|.++++.++..+..+
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 4677888999999999999999999999999865 689999999999999999998776554432
Q ss_pred ---cccchhhhhhHHHHHHHHHHHHhc
Q 010589 105 ---VGWGLGFGIPAIGMVMSVLAFVFG 128 (506)
Q Consensus 105 ---~g~~~~F~i~ai~~~~~li~f~~~ 128 (506)
.+|++.|+++++..++.++.+++.
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~~l 354 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALTFM 354 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 368888888877766665554443
No 61
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.06 E-value=5.4e-08 Score=102.57 Aligned_cols=335 Identities=16% Similarity=0.133 Sum_probs=194.2
Q ss_pred CchhhHHHHHHhhCCCCC-CCCCCCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHH
Q 010589 1 MSQGLVAITLSAVLPGLR-PPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNF 79 (506)
Q Consensus 1 ~~~g~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~ 79 (506)
|.+|.+++.++..+.-.. |.. .+.......+++...+..++...+..+..+++.|..++.+ +|.+.
T Consensus 75 ~l~g~i~~~~~~~llf~~~p~~--------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l 141 (428)
T PF13347_consen 75 ILIGAILLALSFFLLFSPPPAG--------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRL 141 (428)
T ss_pred eehhhHHHHHHHHHhhccccch--------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhH
Confidence 356777777776443321 100 0112233445667777799999999999999999987654 68888
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhcccc-------ccchhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHH
Q 010589 80 FNWYYFCMGIATLTALTVVVYIQDNV-------GWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAA 152 (506)
Q Consensus 80 f~~fy~~iNiG~~i~~~~~~~l~~~~-------g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a 152 (506)
.++-.++.++|.++...+.+.+.+.. +|++.+.+.++..++..++..+..|+ ++.+++.+
T Consensus 142 ~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~------------ 208 (428)
T PF13347_consen 142 SSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ------------ 208 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee-cccccccc------------
Confidence 88888888888876655555443221 68887777777666666655554443 00000000
Q ss_pred HHhccccCCCCcccccccCCcccccccccccccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHH
Q 010589 153 FKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPV 232 (506)
Q Consensus 153 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l 232 (506)
+++.+ +.+..+. ++ ++ |.+. .+
T Consensus 209 --~~~~~-------------------------------~~~~~~~----------------~~-----~n-r~~~---~l 230 (428)
T PF13347_consen 209 --EKKIS-------------------------------LRDSLRS----------------LF-----RN-RPFR---IL 230 (428)
T ss_pred --ccccc-------------------------------cccchhh----------------hc-----cc-chHH---HH
Confidence 00000 0000000 00 00 1222 22
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH-hccCCCCcceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchh
Q 010589 233 WAAGILLVTASSHQHSFTIQQART-MNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRM 311 (506)
Q Consensus 233 ~~~~iif~~~~~q~~s~~~~~~~~-~~~~~~~gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki 311 (506)
++...+.+....-..+...+..+. +..+ . -.+.+.....+..++..|+..+ +.+|.++ .+-+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~-----~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk-------~~~~ 293 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYVLGNE-G-----LISIFMLIFFVASIVGSPLWGR----LSKRFGK-------KKVY 293 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h-----hhHHHHHHHHHHHHHHHHHHHH----HHHHccc-------eeeh
Confidence 333344444444333333333222 2211 0 1133444455555666666544 5666543 2347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-------h
Q 010589 312 GVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-------E 384 (506)
Q Consensus 312 ~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-------~ 384 (506)
..|.++.++++++..+.. .-+.++.++..++.+++-....+...++..+..+ +
T Consensus 294 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~ 353 (428)
T PF13347_consen 294 IIGLLLAALGFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGR 353 (428)
T ss_pred hhhHHHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCC
Confidence 788888888888776642 1367888889999999999999999999988877 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC-CCcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 385 SMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR-NLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 385 ~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~-~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
+..|+++|++.+..-++..+++.+...+-...+ +-++. .-++.....+-.+++.+.++..++-.++.++|+-
T Consensus 354 r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G----y~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l 426 (428)
T PF13347_consen 354 RREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG----YDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPL 426 (428)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC----cCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 567999999999999999998887776654331 11110 1222234555566666666666666666776653
No 62
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.05 E-value=2.1e-08 Score=107.35 Aligned_cols=84 Identities=4% Similarity=-0.034 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc---------cc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD---------NV 105 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~---------~~ 105 (506)
+.+.+++...+.++|.+..-+ ....+++.++++ +|+.++++++...|+|..+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 455667777788888776543 445677888654 58999999988888998888776665432 25
Q ss_pred ccchhhhhhHHHHHHHHHHH
Q 010589 106 GWGLGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 106 g~~~~F~i~ai~~~~~li~f 125 (506)
||++.|.+.++..++..+..
T Consensus 196 gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 89999998887666554443
No 63
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.05 E-value=2.1e-07 Score=97.25 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-cccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-VGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 113 (506)
+.+.+++...+.++..+...|...++..|.++++ +|.++.++..++.++|.++++.+.+++.+. .||+..|++
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 4565665556667888889999999999998654 599999999999999999999998888875 599999999
Q ss_pred hHHHHHHHHHHH
Q 010589 114 PAIGMVMSVLAF 125 (506)
Q Consensus 114 ~ai~~~~~li~f 125 (506)
.++..++..+..
T Consensus 167 ~a~~~l~~~l~~ 178 (402)
T PRK11902 167 MAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHH
Confidence 888776655543
No 64
>PRK09848 glucuronide transporter; Provisional
Probab=99.04 E-value=4.3e-08 Score=103.98 Aligned_cols=130 Identities=8% Similarity=0.108 Sum_probs=83.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh-
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES- 385 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~- 385 (506)
..+.+.+|+++.+++++...... ..+.|+++...++.++|+.+..+...+...+.+|++
T Consensus 293 ~~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~ 352 (448)
T PRK09848 293 KKNTFLIGALLGTCGYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE 352 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34457778888887776554311 134556667778999999999999999999888754
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 386 ------MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYT 459 (506)
Q Consensus 386 ------~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~ 459 (506)
.+|.++|++.+..-+|..+|..+...+-... ++-++.+-.++-...+.+.+..+.++..++..++.++|+
T Consensus 353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~----G~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~ 428 (448)
T PRK09848 353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS----GYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYP 428 (448)
T ss_pred HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 5699999999999999999887776554332 111110101112344555555555555555555555554
Q ss_pred c
Q 010589 460 Y 460 (506)
Q Consensus 460 ~ 460 (506)
-
T Consensus 429 l 429 (448)
T PRK09848 429 L 429 (448)
T ss_pred C
Confidence 4
No 65
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.03 E-value=8e-08 Score=99.43 Aligned_cols=83 Identities=23% Similarity=0.125 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+...++++..+.++|.|.. ++..+..++.++++ +|.++.+++..+.++|..+++.+++++.+++|||+.|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5777889999999999864 45555567777653 6999999999999999999999999999999999999885
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
++..++..++
T Consensus 151 ~~l~~~~~~~ 160 (368)
T TIGR00903 151 AAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 66
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.03 E-value=3.7e-08 Score=101.88 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc--cchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG--WGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g--~~~~F~ 112 (506)
+.+.++++..+.++|.|...+...+++.|.++++ +|..+++++..+.++|..+++.+.+.+.+..+ |++.|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4777888899999999999999999999999765 59999999999999999999999999887766 999998
Q ss_pred hhHHHHHHHHH
Q 010589 113 IPAIGMVMSVL 123 (506)
Q Consensus 113 i~ai~~~~~li 123 (506)
+.++..++.++
T Consensus 173 ~~~~~~~~~~~ 183 (405)
T TIGR00891 173 ISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHH
Confidence 76665554443
No 67
>PRK03699 putative transporter; Provisional
Probab=99.03 E-value=2.1e-07 Score=96.87 Aligned_cols=84 Identities=10% Similarity=0.135 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc-cccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ-DNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~-~~~g~~~~F~i 113 (506)
+.+.+++...+.+++.|...+...+.+.+.++++ +|..+++..+.+.++|..++|.+.+++. +..||++.|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4677888888999999999999999999998653 5888888888899999999998888764 46799999998
Q ss_pred hHHHHHHHHHH
Q 010589 114 PAIGMVMSVLA 124 (506)
Q Consensus 114 ~ai~~~~~li~ 124 (506)
.++..++..+.
T Consensus 168 ~~~~~~~~~~~ 178 (394)
T PRK03699 168 IGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHH
Confidence 77766555443
No 68
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.03 E-value=8.5e-08 Score=98.41 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+++.+.++.++.++..|.|-+-..+..+|..+++ +|.++..+-+.+..++..+|.-++.++.|.+|||..|++-
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 6899999999999999999999999999999987 5999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
++.-+++++..+..
T Consensus 174 a~l~ll~~~~~~~~ 187 (394)
T COG2814 174 AVLALLALLLLWKL 187 (394)
T ss_pred HHHHHHHHHHHHHh
Confidence 77666665554443
No 69
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.01 E-value=5e-08 Score=100.15 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccccc
Q 010589 37 GVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVGWG 108 (506)
Q Consensus 37 ~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g~~ 108 (506)
..++++..+.++|.|...+...+++.|.++++ +|+...++...+.++|.++++.+.+.+. +.++|+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 35777888999999999999999999998765 5899999999999999999998776653 357999
Q ss_pred hhhhhhHHHHHHHHHH
Q 010589 109 LGFGIPAIGMVMSVLA 124 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~ 124 (506)
+.|.+.++..+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998877766555443
No 70
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.95 E-value=2.6e-08 Score=106.33 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=157.0
Q ss_pred HHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHH
Q 010589 39 LYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGM 118 (506)
Q Consensus 39 ~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~ 118 (506)
..+.+.+++++.+.......++..|+.+ +++ +.+....++.|.+.++|.++|+.++|++.++++|+..|.+.++..
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ 198 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALL 198 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 3346778899999999999999999998 432 245556789999999999999999999999999999999988888
Q ss_pred HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhhhhcc
Q 010589 119 VMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATV 198 (506)
Q Consensus 119 ~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~ 198 (506)
++..+..++.++.-....|.... + . ..+..... .+.. ....+..+
T Consensus 199 ll~~~~~~~~~E~~~~~~~~~~~--------------~-~-------~~~~~~~~------~~~~-----~~~~~~~~-- 243 (468)
T TIGR00788 199 LLQLFVSNLSKERRAFVRPRIGT--------------Y-L-------EMNMALLT------LGVL-----ANVKVQIL-- 243 (468)
T ss_pred HHHHHHHHhcccccccccccccc--------------c-c-------hhhhhhhh------hhHH-----HHHHHHHH--
Confidence 77755444443310000010000 0 0 00000000 0000 00000000
Q ss_pred ccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHhccCCCCcceeCc---cccch
Q 010589 199 TEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGIL-LVTASSHQHSFTIQQARTMNTHLTHSFKIPP---ASLSI 274 (506)
Q Consensus 199 ~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~ii-f~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~---~~~~~ 274 (506)
..|+. -.+|.+.+.+.+ ..+ |........+.+.++. + ..| .++ +.+..
T Consensus 244 -----------~l~~~------l~~~~i~~~l~f---ifl~~~~~~~~~~~~f~~~~---~-~lG----~s~~~~G~~~~ 295 (468)
T TIGR00788 244 -----------GLRGA------IQLLEIAKPLIF---IFLSYANLPGASGSVFCATT---Q-CLP----GGPSFSGMSKV 295 (468)
T ss_pred -----------HHHHH------HhcHHHHHHHHH---HHHHHhhcCCCCceeEEEEc---c-cCC----CCcchhhhHHH
Confidence 00000 001222221111 111 1111111111111110 1 111 122 33445
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
...+..++...++++. .+|. +..+-+.++.++.+++.+...... .|.+. ..| .-+.+
T Consensus 296 ~~~v~~i~g~~~~~~~----~~~~-------~~r~~l~~~~~l~~~~~~~~~~l~-~~~~~--~~g---------i~~~~ 352 (468)
T TIGR00788 296 VGNLGSLCGVGGYDRF----LKTF-------PYRLLFGVTTLLYTLSSLFDLILV-KRWNL--AFG---------ISDEV 352 (468)
T ss_pred HHHHHHHHHHHHHHHH----HhhC-------CHHHHHHHHHHHHHHHHhCceeee-ecccc--ccC---------CCCee
Confidence 5556666666666553 2332 344456667777776654432110 01110 011 01123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
+.+...++.+++..+.....+.++.+.+|++.+|...|+......+|..+++.++....+
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677777777777789999999999999999999999999999999988887764
No 71
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.95 E-value=3.2e-07 Score=97.56 Aligned_cols=334 Identities=10% Similarity=0.001 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhh--ccc----------
Q 010589 37 GVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYI--QDN---------- 104 (506)
Q Consensus 37 ~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l--~~~---------- 104 (506)
+.+.+++.+.-++.....+...++++|+.++++ ++++.+++++.++.|+|+.+|+.++++. .+.
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 445566666777888888888999999999775 2457899999999999999999998875 221
Q ss_pred ---cccchhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCccccccccc
Q 010589 105 ---VGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHG 181 (506)
Q Consensus 105 ---~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 181 (506)
.+++..|.+.++.++++.++-.+.-|++...+++.. . +...+..++ ....
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-~------------~~~~~~~~~------~~~~-------- 243 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-I------------NSEAAPPSK------HGEE-------- 243 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-h------------hhhcccccc------cchh--------
Confidence 167889999999888888776555444321111000 0 000000000 0000
Q ss_pred ccccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HhccC
Q 010589 182 TLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQAR-TMNTH 260 (506)
Q Consensus 182 ~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~-~~~~~ 260 (506)
.......+..+ .-| |.+.+++..-.+.=+=|..|.+..|.+.-+.- +-+.+
T Consensus 244 ----~~~~~i~~~~~------------~mP------------~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~ 295 (477)
T TIGR01301 244 ----AFFGELFGAFK------------YLP------------RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVN 295 (477)
T ss_pred ----hhHHHHHHHHH------------HCC------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCc
Confidence 00000000000 001 22333333322222223333233333322110 00000
Q ss_pred CCCcceeC---ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH--H
Q 010589 261 LTHSFKIP---PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKK--V 335 (506)
Q Consensus 261 ~~~gf~ip---~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~--~ 335 (506)
-...++-- ..+-...|++... ++..++.++.||.+. ...-..++.++.++|++...++.....+ .
T Consensus 296 ~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~------~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~ 365 (477)
T TIGR01301 296 QGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGA------GKRLWGIVNIILAICLAATVLVTYVAKNSRY 365 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcc------chhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 00000000 1222233433333 344444445555431 1122368888999998887765310000 0
Q ss_pred -hhhcCCCCCCCCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHhHcccCh--hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010589 336 -AANHHLLDDPKAIIPIS-VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPE--SMRSTAVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 336 -~~~~g~~~~~~~~~~~s-~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~--~~~g~~~g~~~l~~aig~~l~~~l~~~ 411 (506)
...++... .+.. .++.+..+.+.|++-.....+=++++.+..|+ +.+|.+||++.++..+...+..+..+.
T Consensus 366 ~~~~~~~~~-----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 366 YDGDGESLP-----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred ccccccccC-----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0122 35677788999999999999999999999995 566999999999999999998877666
Q ss_pred hhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 412 VHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWF 457 (506)
Q Consensus 412 ~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~ 457 (506)
+.. ++++ +-...+.+-++.++++++..++..|+
T Consensus 441 ~~~-------~~g~------~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 441 WDQ-------LFGG------GNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHH-------HcCC------CCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 442 2221 11344544455666666666666554
No 72
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.95 E-value=2.9e-07 Score=97.34 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhh-hccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVY-IQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~-l~~~~g~~~~F~i 113 (506)
+...+++...+.+++.|..-+.....+.|.++++ +|+.++++++.+.++|..+++.+.+. +.++.+|+.+|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3556667778889999998888889999988765 59999999999999999999877665 4456799999999
Q ss_pred hHHHHHHHHHH
Q 010589 114 PAIGMVMSVLA 124 (506)
Q Consensus 114 ~ai~~~~~li~ 124 (506)
.++..++..+.
T Consensus 191 ~~~~~~i~~~~ 201 (438)
T TIGR00712 191 PAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHH
Confidence 88776665444
No 73
>PRK09669 putative symporter YagG; Provisional
Probab=98.92 E-value=2.5e-07 Score=98.03 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCC
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-------ESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLP 424 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-------~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~ 424 (506)
+.++++...++.++++....+...+++.+.++ ++..|...|++.+..-+|..+|+.+...+-...+ +-+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G----y~~ 393 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD----YVG 393 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCC
Confidence 34455666788999999999999999998876 4567888999998888888888877766544331 111
Q ss_pred CCCCccc--chhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 425 DRNLNRG--RLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 425 ~~~ln~~--~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
+ .-.|+ -....-+.++.+.++..++-+.+..+|+-
T Consensus 394 ~-~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~l 430 (444)
T PRK09669 394 G-AAVQSASVLTTINLLFTVIPGVLFAGMAIILNFYKL 430 (444)
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 11121 12344455555555555555555555644
No 74
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.92 E-value=1.9e-07 Score=99.79 Aligned_cols=155 Identities=14% Similarity=0.218 Sum_probs=89.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 010589 272 LSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPI 351 (506)
Q Consensus 272 ~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 351 (506)
+..++.+..++..|+..+ +.+|.++ .+.+.+|+++..++.+.....-. .+ +-
T Consensus 271 ~~~~~~i~~ii~~~~~~~----l~~r~gk-------k~~~~~~~~~~~~~~~~~~~~~~--------~~---------~~ 322 (473)
T PRK10429 271 YLSYAGAANLVTLILFPR----LVKSLSR-------RILWAGASIFPVLSCGVLLLMGL--------AA---------PH 322 (473)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCc-------HHHHHHHHHHHHHHHHHHHHHhc--------cC---------ch
Confidence 344455555666666544 4555432 23345566655555544332100 00 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCC
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-------ESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLP 424 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-------~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~ 424 (506)
+.++++...++.+++.....+...++..+.+| ++..|.+.|.+.+..-+|..+++.+...+-...+ +-+
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G----y~~ 398 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG----YVP 398 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCC
Confidence 34555666688999999999999999999877 5667779999999988888888777765543321 111
Q ss_pred CCCCcc--cchhHHHHHHHHHHHHHHHHHHH-hhhcccc
Q 010589 425 DRNLNR--GRLEHYYWLVSGIQVINLVYYVI-CAWFYTY 460 (506)
Q Consensus 425 ~~~ln~--~~~~~~~~~la~l~~l~~~i~~~-~~~~y~~ 460 (506)
+-++ ......-++++.+.++..++-.+ +.++|+-
T Consensus 399 --~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~y~l 435 (473)
T PRK10429 399 --NVEQSAQTLLGMQFIMIGLPTLFFMITLVLYFRYYRL 435 (473)
T ss_pred --CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeC
Confidence 1122 12344555555555555444333 3345644
No 75
>PRK09952 shikimate transporter; Provisional
Probab=98.92 E-value=5.7e-07 Score=95.23 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccccch
Q 010589 38 VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVGWGL 109 (506)
Q Consensus 38 ~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g~~~ 109 (506)
.+++...+.++|.|+.-|...+++.+.++++ +|+...+....+..+|.+++..+..++. +++|||+
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 5777888999999999999999999988765 5888888888899999998877666654 3589999
Q ss_pred hhhhhHHHHHH
Q 010589 110 GFGIPAIGMVM 120 (506)
Q Consensus 110 ~F~i~ai~~~~ 120 (506)
.|.+.++..++
T Consensus 201 ~f~~~~~~~l~ 211 (438)
T PRK09952 201 PFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHH
Confidence 99987765433
No 76
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.88 E-value=2.1e-07 Score=97.80 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=89.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
.+.+++.+..++..++..+ +.+|.+ +.+.+..+.++.+++++..+..
T Consensus 266 ~~~~~~~~~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~l~~~~~~l~~~~---------------------- 312 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPF----IINRIG-------AKNALLLAGTIMAVRIIGSGFA---------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------cchhhHHHHHHHHHHHHHHHhc----------------------
Confidence 4455555555566565555 455543 2234667777777776665542
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVAL-YWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~-~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+.+.+.+..
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------------- 379 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------------- 379 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 2456677778889998888888888999999999999887654 66677788888887776665321
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVIC 454 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~ 454 (506)
.+...|..++++.++..++.++.
T Consensus 380 --G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 380 --GFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHH
Confidence 12455666677666666555543
No 77
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.88 E-value=2.9e-06 Score=88.65 Aligned_cols=77 Identities=8% Similarity=0.024 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHH-HHHhhHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIAT-LTALTVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i 113 (506)
+.+.+++...+.++|.+..-+...+.+.+.++++ +|+++.+++..+.++|. .+++.+.+++.+..||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 3566667777778888777777777777777654 69999999999999996 6899999999888897666554
Q ss_pred hHHH
Q 010589 114 PAIG 117 (506)
Q Consensus 114 ~ai~ 117 (506)
....
T Consensus 178 ~~~~ 181 (402)
T TIGR00897 178 ALAF 181 (402)
T ss_pred HHHH
Confidence 4433
No 78
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.88 E-value=7.2e-07 Score=93.66 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc------ccccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD------NVGWG 108 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~------~~g~~ 108 (506)
+.+.++++..+.++|.|..-|...+.+.+.++++ +|+.+.+++..+.++|..+++.+++++.+ ..||+
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 4677888999999999999898888889888854 69999999999999999999999988753 46999
Q ss_pred hhhhhhHHHHHHHHHHH
Q 010589 109 LGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~f 125 (506)
+.|.+.++..++..++.
T Consensus 169 ~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998777665544433
No 79
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.86 E-value=9.3e-07 Score=95.26 Aligned_cols=85 Identities=13% Similarity=0.222 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc-----------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD----------- 103 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~----------- 103 (506)
+...++++..+.++|.|+.-|....++.+.++++ +|+++.++++.+.++|.++++.+..++..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3567889999999999999999999999999876 59999999999999999999887765421
Q ss_pred ------------ccccchhhhhhHHHHHHHHHHH
Q 010589 104 ------------NVGWGLGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 104 ------------~~g~~~~F~i~ai~~~~~li~f 125 (506)
..+||+.|.+.++..++..+..
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 2479999987777665554443
No 80
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.86 E-value=5.3e-07 Score=92.31 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc--ccchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV--GWGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~--g~~~~F~ 112 (506)
+.+.++++..+.++|.|...+...+.+.|.++ + +|.++++++..+.++|..+++.+.+.+.++. +|++.|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-Q------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-c------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 35667788888999999888888888877764 2 5899999999999999999999998887765 3888887
Q ss_pred hhHHHHHHH
Q 010589 113 IPAIGMVMS 121 (506)
Q Consensus 113 i~ai~~~~~ 121 (506)
+.++..++.
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 666544443
No 81
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.86 E-value=3e-07 Score=98.16 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc---ccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV---GWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~---g~~~~F 111 (506)
+.+.+++...+.+++.|..-|...+.+.|.++++ +|+.+++++..+.++|..+++.+..++.+.. +|+..|
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f 194 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF 194 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence 5777888888999999999999999999999876 5999999999999999999998887776543 688888
Q ss_pred hhhHHHHHHHHH
Q 010589 112 GIPAIGMVMSVL 123 (506)
Q Consensus 112 ~i~ai~~~~~li 123 (506)
.+.++..++..+
T Consensus 195 ~~~g~~~~~~~i 206 (467)
T PRK09556 195 IFPSIIALIIGF 206 (467)
T ss_pred HHHHHHHHHHHH
Confidence 876665554333
No 82
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.85 E-value=1.8e-06 Score=91.10 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVG 106 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g 106 (506)
++..+.+...+.++|.|+.-|...+++.|.++++ +|+.+.++.+.+.++|.++++.+.+.+. ..+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 3456788899999999999999999999999865 5888999999999999999987765554 2589
Q ss_pred cchhhhhhHHHHHHH
Q 010589 107 WGLGFGIPAIGMVMS 121 (506)
Q Consensus 107 ~~~~F~i~ai~~~~~ 121 (506)
||+.|.+.++..++.
T Consensus 197 Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 197 WRIPFALGAVLAVVA 211 (432)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999876655443
No 83
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.83 E-value=3.9e-07 Score=96.74 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-cccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-VGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 113 (506)
+.+.+.+...+.+++.|..-|++..+.+.-.+++ +|.++.++.+.+..+|.+++.-++|++-+. .||+..|.+
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 3446678899999999999999999999998876 599999999999999999999999999998 999999998
Q ss_pred hHHHHHHHHHHHHh
Q 010589 114 PAIGMVMSVLAFVF 127 (506)
Q Consensus 114 ~ai~~~~~li~f~~ 127 (506)
.++..++-.+++++
T Consensus 201 ~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 201 FGIVGLIWFILWFL 214 (466)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877665555444
No 84
>PRK15075 citrate-proton symporter; Provisional
Probab=98.83 E-value=1.8e-06 Score=91.19 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhh--------ccccccch
Q 010589 38 VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYI--------QDNVGWGL 109 (506)
Q Consensus 38 ~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l--------~~~~g~~~ 109 (506)
.++++..+.++|.|..-|+..+++.|.++++ +|.++.+++..+.++|..+++.+++.+ .+++||++
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 4677888999999999999999999999865 599999999888888888887776665 25689999
Q ss_pred hhhhhHH
Q 010589 110 GFGIPAI 116 (506)
Q Consensus 110 ~F~i~ai 116 (506)
.|.++++
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987544
No 85
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.80 E-value=1.7e-06 Score=91.09 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=95.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
...+++.+..++...+..+ +.+|.+ +.+-+.++.++.++++....... + ..
T Consensus 255 ~~~~~~~i~~i~~~~~~g~----l~dr~g-------~r~~l~~~~~~~~v~~~l~~~~~----------~--------~~ 305 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPF----FLKRFG-------IKKVMLLSLVAWALRFGFFAYGD----------P--------EY 305 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHcC----------c--------ch
Confidence 3444555555555555554 445542 33346677777777765554411 0 01
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYW-IAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~-l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.+++.++...++.++++.+..+....++.+.+|++.|+.++|+.. ...++|..+|+.+.+.+.+..++ .+
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---------~~ 376 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---------YG 376 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---------cc
Confidence 123345566789999999999999999999999999999999996 67889999998888766532110 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
-.+++.-|...+++.++..++++++.|
T Consensus 377 ~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 377 TFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 002355566777777777766666654
No 86
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.79 E-value=5.4e-07 Score=91.99 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHh--hhhccccccchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVV--VYIQDNVGWGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~--~~l~~~~g~~~~F~ 112 (506)
+.+.+.+-..+.+.-+|.--|...-+++.-|+.+ +|++..+++..+.|+|..+.+.++ +++..+++|+.+|.
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 5666777777778888888899999999999876 599999999999999999999999 99999999999999
Q ss_pred hhHHH-HHHHHHHHHhcCc
Q 010589 113 IPAIG-MVMSVLAFVFGSP 130 (506)
Q Consensus 113 i~ai~-~~~~li~f~~~~~ 130 (506)
+|++. ++++++.+...|.
T Consensus 190 ~pgiiaiival~~~~~~rd 208 (448)
T COG2271 190 FPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 99975 4556666666664
No 87
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.79 E-value=4.2e-07 Score=100.30 Aligned_cols=252 Identities=12% Similarity=-0.054 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchh---
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLG--- 110 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~--- 110 (506)
+.+...+.+..++++.++.+++.+++.+++.+..+ ++++.+.+++|||..+.+.+.+. ++..+..... +...
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccc
Confidence 47777789999999999999999999999998765 35677899999999999997764 4444444333 3322
Q ss_pred ----hhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 111 ----FGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 111 ----F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
++..++.+++.++.++.+...+++.++.+.+...+.+++.......+.
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~---------------------------- 208 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK---------------------------- 208 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH----------------------------
Confidence 236667777788888888877766655544433344444333222110
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCc
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRL--ATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHS 264 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~--~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~g 264 (506)
+... .. ......|.. ....++++++...+++.++...+.+|+.+.|.......+..++++..+ .
T Consensus 209 -------~~~~-~~-----~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~ 274 (654)
T TIGR00926 209 -------RFST-RS-----EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-D 274 (654)
T ss_pred -------hhcc-CC-----cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-c
Confidence 0000 00 000012211 123345678999999999999999999999988889999999998865 5
Q ss_pred ceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 265 FKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKV 335 (506)
Q Consensus 265 f~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~ 335 (506)
+...+...+.++++-.++.+|+...+-+|+++++. ..-.+++++.-+.+.+.++.+..++++..+.+.
T Consensus 275 l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~---~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 275 VGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIA---KCGTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred cCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHH---hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556678899999999999999998899999974 222357789999999999999999988766654
No 88
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.78 E-value=1.2e-06 Score=91.13 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
-+.+|.++.++++...... .+++++++..++.+++.........++..+..|++.++.
T Consensus 286 ~l~~~~~l~~l~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at 343 (396)
T TIGR00882 286 ALLIAGTIMSVRIIGSSFA----------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSAT 343 (396)
T ss_pred hHHHHHHHHHHHHHHHHhc----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 3667777777766544331 246667777888999887777777788888889999888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 010589 390 AVAL-YWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYV 452 (506)
Q Consensus 390 ~~g~-~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~ 452 (506)
..+. +.....+|+.+++.+.+...+.. .+...|.+.+++.++..++-.
T Consensus 344 ~~~~~~~~~~~lg~~~~~~l~G~l~~~~---------------G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 344 IYLIGFQFAKQLAMIFLSTLAGNMYDSI---------------GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred eehHHHHHHHHHHHHHHHHhHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHH
Confidence 6665 55778888888877776665321 135556666666666655543
No 89
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.74 E-value=5e-06 Score=86.37 Aligned_cols=54 Identities=9% Similarity=-0.106 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhc
Q 010589 75 RKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFG 128 (506)
Q Consensus 75 ~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~ 128 (506)
+++.+.+...++..+|.++|+.+.+++.+++||+..|++.++..++..+..++.
T Consensus 130 ~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 130 TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666777888899999999999999999999999999888777666554443
No 90
>PRK11462 putative transporter; Provisional
Probab=98.68 E-value=7.9e-06 Score=87.14 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=54.5
Q ss_pred HHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-------cccchhh
Q 010589 39 LYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-------VGWGLGF 111 (506)
Q Consensus 39 ~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-------~g~~~~F 111 (506)
+++...+..++..++.....++.+++-++.+ +|.+..++...+.++|.++++++...+.+. .||....
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~ 186 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGI 186 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 4444445577777777888888888876543 799999999999999988887765433322 2466655
Q ss_pred hhhHHHHHHHHHH
Q 010589 112 GIPAIGMVMSVLA 124 (506)
Q Consensus 112 ~i~ai~~~~~li~ 124 (506)
.+.++..+++..+
T Consensus 187 ~i~~ii~~i~~~i 199 (460)
T PRK11462 187 AVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444433
No 91
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=6.8e-07 Score=90.39 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=96.6
Q ss_pred CchhhHHHHHHhhCCCCCCCCCCCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHH
Q 010589 1 MSQGLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFF 80 (506)
Q Consensus 1 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f 80 (506)
|++|++++++|+.+..-. .+++.++++..+-++|.++..++-.++++|.|+++. +|++++
T Consensus 139 m~~Gl~vmf~sTilFafg---------------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vm 198 (464)
T KOG3764|consen 139 MVAGLFVMFLSTILFAFG---------------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVM 198 (464)
T ss_pred HHHHHHHHHHHHHHHHHc---------------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHH
Confidence 678999999999887743 268899999999999999999999999999999875 699999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHh
Q 010589 81 NWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 81 ~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~ 127 (506)
++---++.+|.++||-.+|.+.|-.|+++-|+++++.+++...+-++
T Consensus 199 GialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 199 GIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999986665444
No 92
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.65 E-value=9.9e-06 Score=86.51 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc------cccccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ------DNVGWG 108 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~------~~~g~~ 108 (506)
+.+.+.+-..+.++-.+..-|+....++.-|.++ +|..-+++||.+.++|.++|.++...+. ...||+
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~ 206 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR 206 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence 5777888899999999999999999999999865 5999999999999999999999887753 358999
Q ss_pred hhhhhhHHHHHHHHHH-HHhc
Q 010589 109 LGFGIPAIGMVMSVLA-FVFG 128 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~-f~~~ 128 (506)
|.|.+.++.+++..++ |++.
T Consensus 207 ~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 207 WLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred eehhHHHHHHHHHHheEEEEe
Confidence 9999999887775544 4433
No 93
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.63 E-value=3.1e-05 Score=79.42 Aligned_cols=271 Identities=15% Similarity=0.191 Sum_probs=156.5
Q ss_pred cchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhh
Q 010589 33 GLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFG 112 (506)
Q Consensus 33 ~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~ 112 (506)
........++..++++|.+...+...++.+|.-+++ +|.+..++-|.+.-+|..++.++.+.+-+.++..-..-
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~ 159 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ 159 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 344555667777888888889999999999998876 69999999999999999999999988777665443332
Q ss_pred hh----HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccc
Q 010589 113 IP----AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQ 188 (506)
Q Consensus 113 i~----ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~ 188 (506)
+. .+.+++.++ -+++.+. +..+ +. ..++++ .
T Consensus 160 v~~~~a~i~~~l~~i-a~wg~E~-----r~~~---------------~~-~~~~~~-----------------------~ 194 (403)
T PF03209_consen 160 VIQGVALIALLLNLI-ALWGQEP-----RRSR---------------RA-AAAERP-----------------------R 194 (403)
T ss_pred HHHHHHHHHHHHHHH-HHHhccc-----CCcc---------------cc-cCCCCC-----------------------C
Confidence 22 222222221 1223221 1100 00 000000 0
Q ss_pred hhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeC
Q 010589 189 FKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIP 268 (506)
Q Consensus 189 ~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip 268 (506)
..+.+...... .+ .+.++++.++ ++...-| ..|+--+....++.|.+|
T Consensus 195 ~~f~~a~~~~~------------------~~-~~a~~f~~fl--~l~t~a~-----------~~QD~iLEPygg~Vfgms 242 (403)
T PF03209_consen 195 PPFREAWRQVW------------------AS-PQARRFFVFL--FLGTLAF-----------FMQDVILEPYGGEVFGMS 242 (403)
T ss_pred ccHHHHHHHHH------------------hC-CChhHHHHHH--HHHHHHH-----------HhhHHHcCCchhHHcCCC
Confidence 00111111000 00 1123332111 1111111 122222221111223344
Q ss_pred cc---ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010589 269 PA---SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP 345 (506)
Q Consensus 269 ~~---~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 345 (506)
++ .++.+-....++...+..+.. .+|. .+.+.-.+|....++++....+...
T Consensus 243 v~eTT~Lta~~~~G~L~G~~~~g~~l---~~~~-------~~~~~a~~G~~~~~~~f~lii~a~~--------------- 297 (403)
T PF03209_consen 243 VGETTRLTAFWGGGTLLGMLLAGFLL---SRRL-------GKKRTAALGCLLGALAFALIILAGP--------------- 297 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-------CchHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 43 344455555666555555532 2221 2223344677777777766544320
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 346 KAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKY 415 (506)
Q Consensus 346 ~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~ 415 (506)
.-+.|.+.+..+++|+|-.+.....++..-+++++...|+.||+|..+.+++..++..++....+.
T Consensus 298 ----~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 298 ----LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred ----cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 114556788999999999999999999999999999999999999999988888877777666544
No 94
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.61 E-value=1.7e-05 Score=80.17 Aligned_cols=86 Identities=7% Similarity=-0.086 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc---------
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN--------- 104 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~--------- 104 (506)
.+++.+.+++.+++.|.++..+...+++++.-+++ ++.+..++...+..+|++++|++.+.+..+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 47889999999999999999999999999998765 478888999999999999999999876632
Q ss_pred -------cccchhhhhhHHHHHHHHHHH
Q 010589 105 -------VGWGLGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 105 -------~g~~~~F~i~ai~~~~~li~f 125 (506)
..|++.|.+.++..++..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888885555444433333
No 95
>PRK10133 L-fucose transporter; Provisional
Probab=98.60 E-value=1.3e-05 Score=84.84 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ 102 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~ 102 (506)
+.+.+++++.+.++|.|...+...+++.|..+++ +|....+++.....+|..+|+.+++.+.
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999764322 4555678888889999999998876543
No 96
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.44 E-value=3.1e-05 Score=81.33 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc-----------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD----------- 103 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~----------- 103 (506)
+.+.+++++.+.++|.|...+...+.+.+..+++ +|.+..++.....++|..+|+.+++.+..
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 5788889999999999999999999988876544 47777889999999999999999887732
Q ss_pred ---------------ccccchhhhhhHHHHHHHHHH
Q 010589 104 ---------------NVGWGLGFGIPAIGMVMSVLA 124 (506)
Q Consensus 104 ---------------~~g~~~~F~i~ai~~~~~li~ 124 (506)
..+|++.|.+.++..++..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246999998776655444333
No 97
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.39 E-value=9.2e-05 Score=82.12 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc----------
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV---------- 105 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~---------- 105 (506)
...++++.++.++|.+..-+...+++.|.++++ +|..++++++.+.++|..+|+++++++.+.+
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~ 245 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTED 245 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCC
Confidence 556778999999999999999999999999865 5999999999999999999999999887543
Q ss_pred ------------ccchhhhhhHHHHHHHHHHHHhcC
Q 010589 106 ------------GWGLGFGIPAIGMVMSVLAFVFGS 129 (506)
Q Consensus 106 ------------g~~~~F~i~ai~~~~~li~f~~~~ 129 (506)
+|+++|.+.++..++..+.+++..
T Consensus 246 ~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 246 VILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 278889888877666555444443
No 98
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.38 E-value=1.3e-05 Score=81.89 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc----------c
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD----------N 104 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~----------~ 104 (506)
+.+.++++..+.+++.+.+ +...++++|.++++ +|..+.+++..+.++|..+++.+.+.+.. +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4677788888889987766 44677888888754 58999999998899999888887766554 3
Q ss_pred cccchhh-hhhHHHH
Q 010589 105 VGWGLGF-GIPAIGM 118 (506)
Q Consensus 105 ~g~~~~F-~i~ai~~ 118 (506)
.+|++.| .+.++..
T Consensus 163 ~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 163 LAWGWAFVIVPAGIL 177 (366)
T ss_pred ccccchhHHHHHHHH
Confidence 4899999 4434333
No 99
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.35 E-value=3e-05 Score=82.09 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
.....+.+.+..+|.........+++.+.-..++. +++.--++.|.+..+|++++..+.|++.++.+++..|.+++
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 44455667778899988888888888888766642 37777889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCc
Q 010589 116 IGMVMSVLAFVFGSP 130 (506)
Q Consensus 116 i~~~~~li~f~~~~~ 130 (506)
+..++..+..++..+
T Consensus 162 ~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 162 ALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHHhhh
Confidence 877766655444444
No 100
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.32 E-value=0.00011 Score=77.82 Aligned_cols=337 Identities=13% Similarity=0.102 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHh--hhhccccccchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVV--VYIQDNVGWGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~--~~l~~~~g~~~~F~ 112 (506)
..-++.+|..+.++..|........++.+.-|++ .|+..=+..-+++++|.+++..++ ..+...-.|++.+.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~ 188 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA 188 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence 5677889999999999999999999999887765 588888888999999999996544 34556678999999
Q ss_pred hhHHHHHHHHHHHHhcCcc--eeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCc-ccccccccccccccch
Q 010589 113 IPAIGMVMSVLAFVFGSPL--YVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGEL-DSVISVHGTLVHTNQF 189 (506)
Q Consensus 113 i~ai~~~~~li~f~~~~~~--~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~l~~~~~~ 189 (506)
.+.+..++.++...+.-+. |...+ ++ ...+.-| +++ .|...+. +.. .+..
T Consensus 189 ~~~i~~~~~l~~l~~~PESPk~Ll~~-k~-~~~~A~~----sl~------------~y~G~~~~~~~---------~e~~ 241 (485)
T KOG0569|consen 189 FPLIPALLQLALLPFLPESPKYLLIK-KG-DEEEARK----ALK------------FYRGKEDVEAE---------IEEM 241 (485)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHH-cC-CHHHHHH----HHH------------HHhCCCcchhH---------HHHH
Confidence 9888877777765554321 11100 00 0001000 000 1111000 000 0000
Q ss_pred hhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHhccCCCCccee
Q 010589 190 KWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSF--TIQQARTMNTHLTHSFKI 267 (506)
Q Consensus 190 ~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~--~~~~~~~~~~~~~~gf~i 267 (506)
....+.+... .......+++++. ++..+. +++...+ ...+|..+. ..++...+-.+- |++.
T Consensus 242 ~~e~~~~~~~-----~~~~~sl~~~~~~------~~lR~~--~~i~~~v--~~~qq~sGi~ai~~Yst~i~~~a--G~~~ 304 (485)
T KOG0569|consen 242 LREIEEEELE-----KKKQISLRQLLKN------PTLRRP--LLIGIVV--SFAQQFSGINAIFFYSTSIFKTA--GFTP 304 (485)
T ss_pred HHHHHHhccc-----cccCCcHHHHhcC------cchhHH--HHHHHHH--HHHHHhcCcceeHHHHHHHHHHc--CCCH
Confidence 0000000000 0001112211111 111111 1111111 112233321 112222222222 3333
Q ss_pred Cccccchh-----hHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010589 268 PPASLSIF-----GILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLL 342 (506)
Q Consensus 268 p~~~~~~~-----n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~ 342 (506)
+.+...+. |.+..++... +.+|.++| | -+.++..++.++.+++.+.+..... .
T Consensus 305 ~~a~~an~~~g~v~~~~t~~~~~--------lid~~gRR-----p--Lll~~~~~~~~~~~~~~~~~~l~~~-----~-- 362 (485)
T KOG0569|consen 305 EEAQYANLGIGIVNLLSTLVSPF--------LIDRLGRR-----P--LLLISLSLMAVALLLMSIALFLSNS-----F-- 362 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCCc-----H--HHHHHHHHHHHHHHHHHHHHHHHHH-----h--
Confidence 32222222 2222222222 33444322 2 3566666666666655554432111 0
Q ss_pred CCCCCCccchH-HHH-HHHHHHHHHHHHHH-HHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 010589 343 DDPKAIIPISV-FWL-VPQYCLHGVAEVFM-SVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSK 419 (506)
Q Consensus 343 ~~~~~~~~~s~-~wl-i~~~~l~~igEl~~-sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~ 419 (506)
. ++ +|. +...++..++..+. .|+..=+...+.|++.|+.++++-....-..+.+-+.....++..
T Consensus 363 -------~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~---- 430 (485)
T KOG0569|consen 363 -------G-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV---- 430 (485)
T ss_pred -------h-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1 23 232 34444444444443 788888889999999999999999888888888766665555432
Q ss_pred CCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccccCcccc
Q 010589 420 NNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVC 467 (506)
Q Consensus 420 ~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~~~ 467 (506)
++ .++|..+++.+++.++..++..|.=|.|..+|..
T Consensus 431 ---~g---------~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~ 466 (485)
T KOG0569|consen 431 ---IG---------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEII 466 (485)
T ss_pred ---hc---------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 11 4778889999998888888888875555555553
No 101
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.28 E-value=0.00019 Score=75.60 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=78.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHccc------
Q 010589 309 QRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQS------ 382 (506)
Q Consensus 309 ~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~a------ 382 (506)
+-+.+|.++..++.+...+.. .-+.++.+...++.++|-....+.--+++.+.+
T Consensus 303 ~~~~~~~~~~~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~ 362 (467)
T COG2211 303 KLFLIGLLLLAVGYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK 362 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHH
Confidence 346778888888887776632 124555666668888888888777766666544
Q ss_pred -ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC-ccc--chhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 383 -PESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL-NRG--RLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 383 -P~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l-n~~--~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
-++..|..-|...+..=+|..+++.+..+.-... ++.+ |. +|. .+...-.+.+.+-++..++.+...+.|
T Consensus 363 TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~----Gyv~--~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y 436 (467)
T COG2211 363 TGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI----GYVP--NVSAQSASALFGIRFLFIILPALLLLLAAIIIFFY 436 (467)
T ss_pred hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788888888877777777776665544221 2222 22 232 234555555556555555555556655
Q ss_pred ccc
Q 010589 459 TYK 461 (506)
Q Consensus 459 ~~~ 461 (506)
+..
T Consensus 437 ~L~ 439 (467)
T COG2211 437 KLN 439 (467)
T ss_pred cCC
Confidence 443
No 102
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.28 E-value=3e-06 Score=87.43 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=115.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+.+|..-.+.-++..|++.. +..|+ ++.+-|++|..+=+++.+..+...
T Consensus 71 Gll~~vf~v~~~i~sPl~gy----Ladry-------NR~~v~~vG~~iW~~Av~~~~fs~-------------------- 119 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGY----LADRY-------NRKRVIAVGIFIWTLAVFASGFSN-------------------- 119 (493)
T ss_pred cchhHHHHHHHHHHHHHHHH----HHhhc-------CcceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence 56777777778888899887 45554 456679999999998888776631
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
+.|-+++.=.+.|+||...+|...+++.+..|+..||+++++|+++.-+|+.+|...+..+...+. .|-
T Consensus 120 --~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~---~Wr------ 188 (493)
T KOG1330|consen 120 --HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF---WWR------ 188 (493)
T ss_pred --HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc---ceE------
Confidence 344445688999999999999999999999999999999999999999999999988888775431 242
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccccCcc
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEE 465 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~ 465 (506)
+=|++-++++++.+++..++.+.=.++++++
T Consensus 189 -----~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 189 -----WAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred -----EEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 2267788888888887777766544443333
No 103
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.25 E-value=0.00077 Score=73.40 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+...+..|..+.++|.|... .....++|..+.+ .|..++.+..+..-+...+++.++..+..+-+|||.|++.
T Consensus 130 ~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 56678889999999988776 3455688998754 3555555544444344445566655555667999999999
Q ss_pred HHHHHHHHHHHHh
Q 010589 115 AIGMVMSVLAFVF 127 (506)
Q Consensus 115 ai~~~~~li~f~~ 127 (506)
++...++++..++
T Consensus 203 ~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 203 IIWSGIALVLIFF 215 (599)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887765433
No 104
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.11 E-value=0.0038 Score=66.83 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 358 PQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT 416 (506)
Q Consensus 358 ~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~ 416 (506)
+.-++.|+.-.-..+.+=++..++.|+...+...|+|.++.=..+.+|+++.+++.+.+
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467888888889999999999999999999999999999999999999999988655
No 105
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.10 E-value=7.8e-05 Score=76.12 Aligned_cols=137 Identities=19% Similarity=0.116 Sum_probs=98.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..++ .+|.++ .+-+.++.++.+++.+..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l----~d~~g~-------r~~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWL----LDRFGA-------RKTLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHhcCc-------ceeeHHHHHHHHHHHHHHHHH---------------------
Confidence 466777777777777777663 445432 223566777777776665542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.+.++++...++.|++.....|....++.+..|++.|+..++.+.....+|..+++.+...+.... +
T Consensus 80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----~-------- 146 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF----S-------- 146 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC----C--------
Confidence 256777888899999999999999999999999999999999999999999999988887554211 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVIC 454 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~ 454 (506)
....|+..+++.++..++..+.
T Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 147 ---WQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred ---chHHHHHHHHHHHHHHHHhhhe
Confidence 2455666666665555544443
No 106
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.00031 Score=75.65 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=85.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+...-+.++++..+++.++.... .+.+-++..-++.|+..............+..+..
T Consensus 363 ~~~~~~~~~ll~~gl~~~~~p~~----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~ 420 (509)
T KOG2504|consen 363 RALVLFLLTLLIAGLARLFLPFA----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE 420 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 34555667777777776544442 23444666668888888888887777888888898
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
.-+-+.|+-.+..+++.++|+.+...+.+.+. .|+..|...+...+++++.+++....++++
T Consensus 421 ~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--------------~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~ 482 (509)
T KOG2504|consen 421 KLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--------------NYDHAFYFCGLCFLLSAVLLLILRECLKRR 482 (509)
T ss_pred hcchHHHHHHHHhHHHHHcCcccceeeeeccC--------------CeeeehhhcChHHHHHHHHHHHhHHHHHhc
Confidence 88999999999999999999988886665431 256667777777777777666655334433
No 107
>PRK03545 putative arabinose transporter; Provisional
Probab=98.10 E-value=0.00014 Score=75.46 Aligned_cols=111 Identities=8% Similarity=0.007 Sum_probs=84.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..++... +.+|.+ +.+-+..++++.+++.+..+..
T Consensus 47 g~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 94 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLML----LTSNVE-------RRKLLIGLFVLFIASHVLSALA--------------------- 94 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCC-------hHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34455555555565555554 445543 3445777888888887666552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++++++.....|...+++.+..|++.|+.++|++.....+|..+++.+.....
T Consensus 95 -~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 95 -WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 256677777889999999999999999999999999999999999999999999988887654
No 108
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.10 E-value=0.00026 Score=73.72 Aligned_cols=111 Identities=21% Similarity=0.180 Sum_probs=83.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..++..+ +.+|.+ +.+-+..+.++.+++.+.....
T Consensus 53 g~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 100 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGR----LADRIG-------RKRILIVSVALFGLFSLATAQA--------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------CchhHHHHHHHHHHHHHHHHHh---------------------
Confidence 45666677777777777666 445543 2233666777766666554431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....|...+.+.+..|++.|+..++++.....+|..+++.+.....
T Consensus 101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 256677788899999999999999999999999999999999999999999999887775543
No 109
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.08 E-value=0.00017 Score=75.78 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=84.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..++..+ +.+|.+ +.+-+..++++.+++.+..++.
T Consensus 47 ~~~s~~~~~~~~~~~~~g~----l~dr~G-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 93 (412)
T TIGR02332 47 LAATLFYAAYVICGIPSNI----MLAIIG-------ARRWIAGIMVLWGIASTATMFA---------------------- 93 (412)
T ss_pred HHHHHHHHHHHHHHhhHHH----HHHHhC-------hHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 4455555566666666655 445543 2224677888888877776652
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|+++....|....++.+..|++.|+..+|++....++|..++..++....
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246678888999999999999999999999999999999999999999999999988876654
No 110
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.06 E-value=0.0023 Score=69.21 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+.+...+.+++.+....+...+++|.+.++ +|..+.++ +.....|..+++...+|+.. +|++.+++.
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~ 240 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII 240 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 6888999999999999999999999999999987 58888888 88888899999999999876 899999988
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
.+..++.++.
T Consensus 241 ~~~~~~~~~~ 250 (521)
T KOG0255|consen 241 SIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHH
Confidence 8776666555
No 111
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.04 E-value=0.00044 Score=73.01 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=83.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..+ +.+|.+ +.+-+.+++++.+++.+..+..
T Consensus 61 g~~~~~~~~~~~~~~~~~G~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 108 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGI----VSDRSN-------ARYFMGIGLIATGIINILFGFS--------------------- 108 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhH----HHhhcC-------CchhHHHHHHHHHHHHHHHHHH---------------------
Confidence 44555666666777777666 455543 2234677888888877665552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
-+.+.++...++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 109 -~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 109 -SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred -hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 145556666788899999888999999999999999999999999999999999988777664
No 112
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.02 E-value=0.00018 Score=72.69 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=98.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ .+|.+ +.+-+.++.++.+++.++..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~--------------------- 82 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYL----SDRFG-------RRRVLIIGLLLFALGSLLLAFA--------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHS--------HHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHcC-------CeeeEeehhhhhhhHHHHhhhh---------------------
Confidence 456666777777777777764 44432 3335778888888885444431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.+.++++...++.|+++....|....++.+..|++.|+..++.+.....+|..+++.+........ +
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~----~-------- 149 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF----G-------- 149 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC----H--------
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc----c--------
Confidence 134478888999999999999999999999999999999999999999999999998887765211 1
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 010589 430 RGRLEHYYWLVSGIQVINLVY 450 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i 450 (506)
....|++.+++.++..++
T Consensus 150 ---~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 150 ---WRWAFLISAILSLIAAIL 167 (352)
T ss_dssp ---HCCHHHHHHHHHHHHHHH
T ss_pred ---cccccccccchhhhhhhh
Confidence 134466677777766654
No 113
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.02 E-value=0.0015 Score=66.09 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc-ccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV-GWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i 113 (506)
+...++.+-.+++.|.+....-+++.+-+-|++ |-+...++|-.++++|+.+++.++..+.++. ||+.+...
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 577889999999999999888888888777764 4788899999999999999999999988887 79987776
Q ss_pred hHHHHHHHHHHHH
Q 010589 114 PAIGMVMSVLAFV 126 (506)
Q Consensus 114 ~ai~~~~~li~f~ 126 (506)
=+...++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666543
No 114
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.01 E-value=0.00012 Score=77.06 Aligned_cols=142 Identities=13% Similarity=0.226 Sum_probs=96.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
.....+-..=+++-++..+ +.+|.+ ....|..|+.+.++=++.+..++
T Consensus 410 v~~a~~~~gEI~~~ffs~k----lI~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~--------------------- 457 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFK----LIEKIG-------HVNVMYLGLACNVGRFLYYSYLQ--------------------- 457 (618)
T ss_pred ehhhhhccchHHHHHHHHH----HHHHhc-------ccceeeehhhHHHHHHHHHHHhc---------------------
Confidence 4445555555555555555 456653 44557888888888887776643
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIA-ISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~-~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
++|..+|--+++++.-..+.....+++...+|++++..++|+.-.. .++|-.+|++++..+.. .+..
T Consensus 458 -n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~-------~fg~---- 525 (618)
T KOG3762|consen 458 -NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE-------RFGA---- 525 (618)
T ss_pred -CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe-------eehh----
Confidence 4655667779999999999999999999999999999999987664 35555565555554431 1222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
...|+.+++.+++..+++..+-+..++
T Consensus 526 ----~ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 526 ----RTTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 566777777777666666665554443
No 115
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0003 Score=72.53 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=111.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
.+++.+...+.+.+..|+...+ .+|+ ++.+-+...+.+..+|-++.++.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~l----t~r~-------~Rr~lLl~~l~lFi~~n~l~alA-------------------- 98 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALL----TGRL-------ERRRLLLGLLALFIVSNLLSALA-------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hccc-------chHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4788899999999999998773 3332 23333555666777777777763
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
-+.+.++..=++.+++-....+++.+.+.+++|++.|+.++|+-+....++..+|.-++.++.+.- +|
T Consensus 99 --p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~----GW------ 166 (394)
T COG2814 99 --PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF----GW------ 166 (394)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh----hH------
Confidence 367788999999999999999999999999999999999999999999999999988888776432 34
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..-|+..++++++..+..+...|
T Consensus 167 -----R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 -----RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34477788888888777777766
No 116
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.00 E-value=0.00017 Score=74.00 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=84.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..+ +.+|.+ +.+-+..+.++.+++.+..+..
T Consensus 43 g~~~~~~~~~~~~~~~~~g~----l~d~~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 90 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGP----LSDRYG-------RRPVLLLGLFIFALSSLGLALS--------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhh----HHHhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566666667777777665 344432 2334667777777777665542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+...+++.+..|++.|+..+|.+.....+|..+++.+...+.
T Consensus 91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667778899999999999999999999999999999999999999999999988887654
No 117
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.00 E-value=0.00022 Score=73.19 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc---cchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG---WGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g---~~~~F 111 (506)
+++.+++.-++++++.|-|...+ +++..-|+++ +++.+..++- +-|+|..+...+.+.+....| |+..-
T Consensus 104 ~~~~ll~~gll~G~~GasFav~m-~~~s~~fP~~------~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~ 175 (417)
T COG2223 104 STWQLLVIGLLLGLAGASFAVGM-PNASFFFPKE------KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA 175 (417)
T ss_pred chHHHHHHHHHHhcccceehccc-ccccccCChh------hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34666666667777776665444 4456677765 6899999999 889999999999999999999 99999
Q ss_pred hhhHHHHHHHHHHHHhcCc
Q 010589 112 GIPAIGMVMSVLAFVFGSP 130 (506)
Q Consensus 112 ~i~ai~~~~~li~f~~~~~ 130 (506)
.+..+.++++.+.++++.+
T Consensus 176 ~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999998888877765
No 118
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0032 Score=64.55 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=63.7
Q ss_pred chhhHHHHHHhhCCCCCCCCCCCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHH
Q 010589 2 SQGLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFN 81 (506)
Q Consensus 2 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~ 81 (506)
++|+.+..+.+.+...- +....+..+..++.+++.|.|..++...++++++-+++.. .+|= +
T Consensus 82 ~lgL~l~avg~~lF~pA------------a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a---~~rl---n 143 (422)
T COG0738 82 VLGLLLYAVGAALFWPA------------ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA---AFRL---N 143 (422)
T ss_pred HHHHHHHHHHHHHHhhh------------hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH---HHHH---H
Confidence 56788777777555421 3456788899999999999999999999999999987531 2332 3
Q ss_pred HHHHHHHHHHHHHhhHhhhhcc
Q 010589 82 WYYFCMGIATLTALTVVVYIQD 103 (506)
Q Consensus 82 ~fy~~iNiG~~i~~~~~~~l~~ 103 (506)
+---...+|++++|.+++++..
T Consensus 144 l~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 144 LAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 3344577899999999988766
No 119
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.90 E-value=0.0017 Score=67.72 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALY-WIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~-~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.++||+++.=.+.++---+.-....-++++..|+++.++...+. .++.++|..+.+.+.+...+.-
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~------------- 376 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI------------- 376 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-------------
Confidence 35677777779999988899999999999999999988877775 4677888877666665554311
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
.+..-|++++.+.+...++-++..+
T Consensus 377 --G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 377 --GFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred --CcHHHHHHHHHHHHHHHHHheeeec
Confidence 1245578888887777777766654
No 120
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.89 E-value=9.6e-05 Score=75.26 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=95.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..++..+ +.+|.+ +.+-+.+|.++.+++.++.+..
T Consensus 33 g~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 80 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGS----VSDRSN-------PRVFLPIGLILCAIVNLFFGFS--------------------- 80 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhH----HHHhhC-------CeehhHHHHHHHHHHHHHHHHh---------------------
Confidence 45566666777777777666 344543 2234677888888877766653
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccCCCCCcCCCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGT-LVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~-~l~~~~~~~~~~~~~w~~~~~l 428 (506)
.+.++++...++.+++..+..|...+++.+..|++.|+..++++.....+|..+++ .+........ +|
T Consensus 81 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~------ 149 (379)
T TIGR00881 81 -TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY----SW------ 149 (379)
T ss_pred -hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC----Cc------
Confidence 24666777889999999999999999999999999999999999999999999988 3444443210 12
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
...|+..++++++..++.+...
T Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 150 -----HWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred -----hhHHHHHHHHHHHHHHHHheee
Confidence 3345556666655555444443
No 121
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.89 E-value=0.0018 Score=69.77 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=87.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+|..+...+...+..|+..++ .+|.+ +.+-+.+|.++.+++.++.+..
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l----~D~~G-------rk~~l~~~~~~~~~~~~~~~~a--------------------- 91 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGAL----GDRIG-------FKRLLMLGGTLFGLASLAAAFS--------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhc-------cHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 567777777777888877774 44443 3334777888888887776652
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQ-SPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~-aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
-++++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+...+.+
T Consensus 92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2567788888999999999999888877666 588999999999999999999999999887763
No 122
>TIGR00895 2A0115 benzoate transport.
Probab=97.89 E-value=0.00017 Score=74.06 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=82.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..++ .+|.+ +.+-+..|.++.+++.+..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~~~~~~~~~~--------------------- 102 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPL----ADRIG-------RKRVLLWSILLFSVFTLLCALA--------------------- 102 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHH----HHHhh-------hHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 345555556666666666553 44432 2234566777777776655442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+...+++.+..|++.|+..++++.....+|..+++.+.....
T Consensus 103 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 103 -TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred -cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 245667778899999999999999999999999999999999999999999999988876654
No 123
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.88 E-value=0.00067 Score=58.24 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=89.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
.+...+..++..|+..++ .+|.+ +.+-+..+..+.+++.+..... .+
T Consensus 4 ~~~~~~~~~~~~~~~g~~----~d~~g-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 50 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLL----TDRFG-------RKPVLLVGLFIFVLSTAMFALS----------------------SN 50 (141)
T ss_pred EEeehhHHHHHHhhHHHH----Hhhcc-------hhHHHHHHHHHHHHHHHHHHHh----------------------cc
Confidence 344555666666766653 34432 2233556666666665544431 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGR 432 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~ 432 (506)
.+++....++.+++.....+....++.+..|++.|+..++.+.....+|..+++.+.....+. . .
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~--------~ 115 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-------L--------G 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-------c--------c
Confidence 556667789999999999999999999999999999999999999999999998888766521 1 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 010589 433 LEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 433 ~~~~~~~la~l~~l~~~i~~~ 453 (506)
+...|+..+.+.++..+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 116 WRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 234455555555555554443
No 124
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.87 E-value=0.0049 Score=65.51 Aligned_cols=59 Identities=8% Similarity=-0.007 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVY 100 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~ 100 (506)
+++.+++...+.++| |..-+.....+.+.|+++ +|+.+++++...-|+|..+++.+.+.
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578888889999998 555677778888888765 69999999977778888766655544
No 125
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.87 E-value=0.00065 Score=68.86 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.....+.++.-....+.-..++.+..|++.||..+|++....+++..+|+++++...
T Consensus 354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 45566788899999999999999999999999999999999999999999999987665
No 126
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.86 E-value=0.00099 Score=68.70 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=85.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+...+..|+..++ .+|.+ +.+-+.++.++.+++.+..+..
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l----~Dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 97 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLW----GDRYG-------RRLPMVTSIVLFSAGTLACGFA--------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhc-------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 456677777777777877764 44543 2233666777777766655442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|+++....+...+++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246667778899999999999999999999999999999999999999999999988877664
No 127
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.85 E-value=0.0016 Score=68.00 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=87.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.+ +.+-+..++++.+++.+..+..
T Consensus 58 g~~~~~~~~~~~~~~~~~g~----l~Dr~g-------rr~~~~~~~~~~~~~~~~~~~~--------------------- 105 (394)
T PRK10213 58 GQSVTVTAFVAMFASLFITQ----TIQATD-------RRYVVILFAVLLTLSCLLVSFA--------------------- 105 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhcccC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34455677777777777765 344432 3345778888888877665542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++..-++.+++.....|...+++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 106 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 106 -NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred -ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888899999999999999999999999999999999999999999999998887765
No 128
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.82 E-value=0.0068 Score=63.45 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 356 LVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWI-AISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 356 li~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l-~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
++..-+++|+...+..+.+..++.+.+|++.|+.++|++.. ..++|..+|..+++.+.+. +.. -.--.+.
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~-------~g~--~~~~~~~ 374 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA-------FGA--RGMFDWS 374 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------hcc--hhhhhHH
Confidence 33444689999999999999999999999999999999876 4688888888888776632 111 0000124
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 010589 435 HYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~~~~ 456 (506)
.+|.+.+++.++..+++++..|
T Consensus 375 ~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 375 AVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 5566666677777777766543
No 129
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.82 E-value=0.00078 Score=71.74 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=87.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..++ .+|.+ +.+-+.+|.++.+++.++.+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 87 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWL----AKRFG-------TRRLFLISTFAFTLGSLLCGVA--------------------- 87 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHhCc---------------------
Confidence 567777888888888887774 44432 2233667777777776655431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|++.....|....++.+..|++.|+..++++.....+|..+++.+...+.
T Consensus 88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 246677888899999999999999999999999999999999999999999999988877664
No 130
>PRK10054 putative transporter; Provisional
Probab=97.81 E-value=0.0013 Score=68.72 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..++ .+|.+ +.+-+.+|.++.+++++...+..
T Consensus 46 g~~~s~~~~~~~~~~~~~G~l----~Dr~g-------~k~~~~~~~~~~~~~~~~~~~~~-------------------- 94 (395)
T PRK10054 46 GYAMTIALTIGVVFSLGFGIL----ADKFD-------KKRYMLLAITAFASGFIAIPLVN-------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhcC-------cchhHHHHHHHHHHHHHHHHHHh--------------------
Confidence 455566666677777777763 44443 22346678777777777665532
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+..+....+.+.+.....|...+.+.+..|++.|+..+|+......+|..+++.+.....
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455667787877788888899999999999999999999999999999988887765
No 131
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.80 E-value=0.00089 Score=67.81 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=86.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..++ .+|.+ +.+-+..+.++.+++.+....... .+
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~~~--------~~--------- 88 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGAL----ADRYD-------RKKVMIGADLIRAVLVAVLPFVAL--------LG--------- 88 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHH----HHhhc-------hhHHHHHHHHHHHHHHHHHHHHHH--------cC---------
Confidence 456667777777777777663 44443 222356666666666655554321 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++...++.+++..+..|...+++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1356777888899999999999999999999999999999999999999999999998887664
No 132
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.79 E-value=0.0017 Score=67.25 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=87.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+.+.+..++..|+..+ +.+|.+ +.+-+.++.++.+++.+..+..
T Consensus 41 g~~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~l~~~~--------------------- 88 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIAL----FSSRYS-------LKHILLFLVALCVIGNAMFTLS--------------------- 88 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHccCc-------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 56677788888888888776 345543 3334677888888877766552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|+++....+.....+.+..|++.|+..++.+.....+|..++..++..+.
T Consensus 89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 256777788899999999999988888999999999999999999999999998887776654
No 133
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.73 E-value=0.00046 Score=73.42 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=82.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
.+.+...+..++..++..+ +.+|.+ +.+-+.+++++.+++.+...... .
T Consensus 80 ~~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~--------------------~ 128 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGY----LAGKYV-------FKWSIGIGMFLSSVISIVIPWAA--------------------G 128 (465)
T ss_pred HHHHHHHHHHHHHHcchHH----HHHHhC-------cchhhHHHHHHHHHHHHHHHHHH--------------------H
Confidence 3444555556666666655 345543 22346667777666655543321 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++..-+++|++|....|....++.+..|++.|+.++|++.....+|..+++.+...+.
T Consensus 129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667888899999999999999999999999999999999999999999999998887665
No 134
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.72 E-value=0.0024 Score=66.72 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=80.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
....+..++..|+..+ +.+|.+ +.+-+..|.++.+++++..... -++
T Consensus 53 ~~~~l~~~~~~~~~G~----l~dr~g-------~k~~l~~~~~~~~~~~~~~~~~----------------------~~~ 99 (400)
T PRK11646 53 GLRQFIQQGLGIFGGA----IADRFG-------AKPMIVTGMLMRAAGFATMAIA----------------------HEP 99 (400)
T ss_pred HHHHHHHHHHHhhhhH----HHHHhC-------chHHHHHHHHHHHHHHHHHHHh----------------------ccH
Confidence 3334444444555555 444543 2233667888888887766542 256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
|+++...++.++++....|...+.+.+.+|++.|+..+|.+.....+|..+|+.+.....
T Consensus 100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999999999999999999999999999998887765
No 135
>PTZ00207 hypothetical protein; Provisional
Probab=97.71 E-value=0.011 Score=64.65 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHH-HhhHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLT-ALTVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i-~~~~~~~l~~~~g~~~~F~i 113 (506)
+.+.+++...+.++|.|.+-+.....+.+.|+ + +|+.+.++...+.++|+.+ +++..+++.+ +|+..|++
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~ 189 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFF 189 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH
Confidence 57888888999999999888888888888875 2 5899999999999999975 6666666653 56666665
Q ss_pred hHHHHHH-HHHHHHhc
Q 010589 114 PAIGMVM-SVLAFVFG 128 (506)
Q Consensus 114 ~ai~~~~-~li~f~~~ 128 (506)
.++..++ +++.+.+.
T Consensus 190 l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 190 LMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHHHHHHhhe
Confidence 5554443 44444443
No 136
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.71 E-value=0.00048 Score=73.52 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=83.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..+ +.+|++ +.+-+.+++++.+++.+..+.... + .
T Consensus 67 g~~~s~~~~~~~~~~~~~G~----l~Dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~---------~--------~ 118 (467)
T PRK09556 67 GMIGLGFSITYGVGKTLVGY----YADGKN-------TKQFLPFLLILSAICMLGFGASLG---------S--------G 118 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhh----HhhccC-------ccchHHHHHHHHHHHHHHHHHHHh---------c--------c
Confidence 34455555555666666665 455543 334567787777777666554310 0 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
..+.+.++...++.|++|.+..|.....+.+..|++.||.++|++.....+|..+++.+....
T Consensus 119 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 119 SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence 135667778889999999999999999999999999999999999999999999988776544
No 137
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.71 E-value=0.0016 Score=67.42 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=92.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..++..+..++..|+..++ .+|.++ .+-+.+|.++.+++.+.....
T Consensus 42 ~~~~~~~~~~~~~~~~~G~l----~Dr~g~-------r~~l~~~~~~~~i~~~~~~~~---------------------- 88 (392)
T PRK10473 42 IAFSVYLAGMAAAMLFAGKI----ADRSGR-------KPVAIPGAALFIIASLLCSLA---------------------- 88 (392)
T ss_pred HHHHHHHHHHHHHHHhHhHH----HHHhCC-------hHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 44555666666777777774 444321 223566777777776655441
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNR 430 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~ 430 (506)
.+.++++...++++++.....+.....+.+..|++.|+..++.+.....++..+++.+........ +
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~----g--------- 155 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF----P--------- 155 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----C---------
Confidence 245667777889999999999999999999999999999999999988888888888776654211 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 010589 431 GRLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 431 ~~~~~~~~~la~l~~l~~~i~~~ 453 (506)
....|++.++++++..++.+.
T Consensus 156 --~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 156 --WQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH
Confidence 234456666655555544433
No 138
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.70 E-value=0.0023 Score=70.60 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=70.9
Q ss_pred hH-HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc----------
Q 010589 36 LG-VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN---------- 104 (506)
Q Consensus 36 ~~-~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~---------- 104 (506)
++ .+++|..+.++|...+-|--.+.+=|-...+ +-..+++++|..--+|-++|.+++++.-+-
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~ 309 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG 309 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence 44 6778999999998888777777665555443 577888999999999999999988886431
Q ss_pred ---------cccchhhhhhHHHHHHHHHHHHhcCcce
Q 010589 105 ---------VGWGLGFGIPAIGMVMSVLAFVFGSPLY 132 (506)
Q Consensus 105 ---------~g~~~~F~i~ai~~~~~li~f~~~~~~~ 132 (506)
-.||++|++++..++++.+.++++-|.+
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 1599999999999999888777765543
No 139
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.023 Score=60.00 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=96.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCCCC
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLL--DDPKAI 348 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~--~~~~~~ 348 (506)
.+..++.+.+-+..-+-...+.++.||.++. ....-+.+|.++.-+++++..+. ...+..+- +++...
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~f----g~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~ 348 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRGF----GRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLL 348 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc----ccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccccc
Confidence 3444555555555444333334444443221 23334667766666665544331 11111110 110000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
..-+...-...++++|+|+.+....-+....... ++.+..+-+++-+-.++++.++........
T Consensus 349 ~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~--------------- 412 (461)
T KOG3098|consen 349 FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL--------------- 412 (461)
T ss_pred cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH---------------
Confidence 0112223445679999999999999999999998 555677778888888888877654432221
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhccccccCccc
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEV 466 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~~ 466 (506)
...+.....+.+.+...+++.++++++..++++.
T Consensus 413 ----l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k~~ 446 (461)
T KOG3098|consen 413 ----LYIYTLGLPIFCVIATTIFFIVAERTQAMEKKLT 446 (461)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2455666778888888999999988876555444
No 140
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.67 E-value=0.0081 Score=65.00 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-cccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-VGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 113 (506)
+...+++|.++.++|.|+..-.++..++|.-+++ .|+...+.+.+++++|.+++..+.....+. ++||..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 6788999999999999999988888888887654 599999999999999999996554444332 489988887
Q ss_pred hHHHHHHHHHH
Q 010589 114 PAIGMVMSVLA 124 (506)
Q Consensus 114 ~ai~~~~~li~ 124 (506)
..+..++-.+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 77765555444
No 141
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.65 E-value=0.00063 Score=71.88 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=94.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+.+++.-.+..|++.+ |+..++ +..+-+..|.+++.+|-+++..++..
T Consensus 74 G~viaa~slg~~i~~liF~~-----Ws~k~~-----~~k~Pli~s~ii~~~g~llY~~l~~~------------------ 125 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGI-----WSNKTG-----SVKKPLIVSFLIAIIGNLLYLALAYV------------------ 125 (488)
T ss_pred hHHHHHHHHHHHhcchhhcc-----cccccC-----CcccCHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 56667789999999999887 333222 23444899999999999998776631
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHhHc--ccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-CcCCC
Q 010589 350 PI-SVFWLVPQYCLHGVAEVFMSVGHLEFLYD--QSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKN-NWLPD 425 (506)
Q Consensus 350 ~~-s~~wli~~~~l~~igEl~~sp~gl~~~~~--~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~-~w~~~ 425 (506)
+. +-|++..++++.|+|-...+.- =.++++ ..++++|.++... ....+|..+|+.+...+.-.- .+| .|+++
T Consensus 126 ~~~~~y~mL~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~--~~~vlg~ilGp~~q~~f~~Lg-~~G~~i~~~ 201 (488)
T KOG2325|consen 126 PNGVKYLMLVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATS--GGFVLGIILGPTIQLAFTPLG-EKGFMILPG 201 (488)
T ss_pred ccchHHHHHHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhh--hHHHHHHHHhHHHHHHHhhhc-CCceEEcCc
Confidence 22 6688999999999995444442 245554 4555555555444 444455555554444332111 123 56664
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 426 RNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 426 ~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
...|+..... |+.+.+.++..++..++.+.-.++
T Consensus 202 ~~~n~YTap~--w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 202 LIFNMYTAPA--WLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred ceEEecchHH--HHHHHHHHHHHHHHHhheeecccC
Confidence 4566543333 445566666666666555543333
No 142
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.65 E-value=7.8e-05 Score=77.47 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
.+.++++..+.++|.+..-|...+...|.++++ +|++++++++...++|..+++.+.|++.++.||+..|.+.+
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 445666777888888887777777777766543 69999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCcc
Q 010589 116 IGMVMSVLAFVFGSPL 131 (506)
Q Consensus 116 i~~~~~li~f~~~~~~ 131 (506)
+..+++++..++.+++
T Consensus 376 ~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 376 LAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHhccc
Confidence 8888877765555543
No 143
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.65 E-value=0.0038 Score=64.76 Aligned_cols=136 Identities=12% Similarity=0.121 Sum_probs=90.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..++..+...+..|+..++ .+|.+ +.+-+..+.++.+++.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 104 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGL----ADRKG-------RKIMLLRSALGMGIVMVLMGLA---------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhhhC-------cHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 45556666777777776664 44432 2223556776666666554432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNR 430 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~ 430 (506)
.+.++++...++.+++..+ .|...+.+.+..|++.|+..++.+.....+|..+++.+...+.... +
T Consensus 105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----~--------- 170 (408)
T PRK09874 105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY----G--------- 170 (408)
T ss_pred hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C---------
Confidence 2466777788888888665 4667788889999999999999999999999998888877664211 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 431 GRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 431 ~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
....|++.+++.++..++..++.
T Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 171 --LRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHh
Confidence 13446666666665555444443
No 144
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.63 E-value=0.0028 Score=66.33 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=86.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.+ +.+-+.++.++.+++.+..+..
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~--------------------- 103 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGL----LADKFG-------RKPLMMWSIVAYSVGTGLSGLA--------------------- 103 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566677777777777666 455543 3334677888888887766553
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|+|+....+....++.+..|++.|+.+++++....++|..+++.+.....
T Consensus 104 -~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 104 -SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 246677788899999999999999999999999999999999999999999999887765543
No 145
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00028 Score=71.87 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=115.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
.+++...-.+.-++.-|++..+ ..|.+.+-| |.+|++++..+-++.++.+
T Consensus 108 iG~LFaskA~~qllvnp~~G~l----~~~iGy~ip-------m~~Gl~vmf~sTilFafg~------------------- 157 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNL----IDRIGYKIP-------MVAGLFVMFLSTILFAFGN------------------- 157 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhh----HHHhccccH-------HHHHHHHHHHHHHHHHHcc-------------------
Confidence 3667777778888888887774 344443332 8999999999999888853
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM-RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRN 427 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~-~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ 427 (506)
+.+.++.+=.++|+|..+.+..|++++.+.-|+.. ||.+||.-.-..++|..+|+.++++..+.-+
T Consensus 158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G---------- 224 (464)
T KOG3764|consen 158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG---------- 224 (464)
T ss_pred ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC----------
Confidence 44568889999999999999999999999999876 6999999999999999999999988875321
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 428 LNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 428 ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
++.=|.+++.++++..++-+++.+.++..
T Consensus 225 -----k~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 225 -----KSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred -----CcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 24449999999999998888877654333
No 146
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.62 E-value=0.0044 Score=63.14 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=77.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ .+|.+ +.+.+.++.++.+++.+..+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~i~~~~~~~~~-------------------- 88 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFL----VDKFG-------PRYTTTLSLLLLAIPCLWAGLAV-------------------- 88 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 566677777777777777663 44543 22346778888888877665531
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~ 411 (506)
.+.++++...++.+++.... +....++.+..|++.|+..++++.....+|..++..+...
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 14566777888899987765 4577899999999999999999987666666666555543
No 147
>PRK10504 putative transporter; Provisional
Probab=97.62 E-value=0.0058 Score=65.04 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=80.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..|+..+ +.+|.+ +.+.+..++++.+++.+..+..
T Consensus 49 ~~~~~~~~~~~~~~~~~g~----l~d~~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 95 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGW----LADRVG-------VRNIFFTAIVLFTLGSLFCALS---------------------- 95 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhc-------hHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 4455555666666676666 344443 2223556666666666554431
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...+++|+|.....|.....+.+..|++.++..+|.+.....+|..+++.+...+.
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 245667778899999999999999999999999999999999999999999999888887665
No 148
>PRK03699 putative transporter; Provisional
Probab=97.62 E-value=0.0062 Score=63.32 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=79.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..++..++ .+|.+ +.+-+..+.++.+++.+..++.
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l----~dr~g-------~r~~~~~~~~~~~i~~~l~~~~--------------------- 92 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWL----MEIIP-------LKRQLIFGFALMILAVAGLMFS--------------------- 92 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhh-------HHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 345556666666766766664 34432 2223666777777776655542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
-+.++++...++.++++....+.....+.+..|++.|+..++......++|..+++.+...+
T Consensus 93 -~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 93 -HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred -chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566777889999999999988999999999999999999998888888888887776544
No 149
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.59 E-value=0.0009 Score=70.30 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=83.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ .+|.+ +.+-+.++.++.+++.+...... .
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l----~d~~g-------rr~~~~~~~~~~~~~~~~~~~~~-------------------~ 123 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWL----SDRFG-------RKKSLLIIALLFVIGAILMGLAA-------------------F 123 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHh----hhhhh-------hHHHHHHHHHHHHHHHHHHHHhc-------------------c
Confidence 456666777777777777764 44443 22346677777777766665421 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVV 409 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~ 409 (506)
..+.++++...++.++|+....+....++.+..|++.|+..++++.....+|..++..+.
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 224456778889999999999999999999999999999999999999999999998887
No 150
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.56 E-value=0.0007 Score=75.14 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=92.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH--HHHHh-----------
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIK--RKKVA----------- 336 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~--~~~~~----------- 336 (506)
+++.+.+.+.-.+..++..+ +..|. .+.+.+++|++++++|.++.++.... +++..
T Consensus 71 G~i~s~~~i~~~~~~i~v~~----~~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSY----FGTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHH----hhccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 56667777777777777665 34443 34556899999999999888775421 11000
Q ss_pred hhcCCCC-C-------------CCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHH
Q 010589 337 ANHHLLD-D-------------PKAII--PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISM 400 (506)
Q Consensus 337 ~~~g~~~-~-------------~~~~~--~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~ai 400 (506)
.+..++. + ..... ...++.++..-+++|+|+....+.+.+++.+..|++.|+.++|++.....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 0000110 0 00000 113445667779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 010589 401 GNYIGTLVVTLVH 413 (506)
Q Consensus 401 g~~l~~~l~~~~~ 413 (506)
|..+|.+++..+.
T Consensus 220 G~~lG~llgg~l~ 232 (633)
T TIGR00805 220 GPAFGYLLGSFCL 232 (633)
T ss_pred hhHHHHHHHHHHH
Confidence 9999988887665
No 151
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.55 E-value=0.0031 Score=64.04 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=91.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.++| +.+.+|.++.+++.+..+...
T Consensus 41 g~~~s~~~~~~~~~~~~~G~----l~d~~G~r-------~~~~~~~~~~~~~~~~~~~~~-------------------- 89 (377)
T TIGR00890 41 AIWFTLLLIGLAMSMPVGGL----LADKFGPR-------AVAMLGGILYGLGFTFYAIAD-------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHhhhhHH----HHHHcCcc-------chhHHhHHHHHHHHHHHHHHH--------------------
Confidence 45666777777777777766 44554322 236778888888877666532
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
+.+.+....++.++++....+.....+.+..|+ .|+.+++.+.....+|..+++.+....... .
T Consensus 90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~------ 153 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL-------E------ 153 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc-------c------
Confidence 455666777899999998888888888777775 599999999999999988765555433210 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
+....|+..++++++..+..+++.
T Consensus 154 --~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 154 --GVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhe
Confidence 124556666666666555544443
No 152
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.54 E-value=0.0098 Score=66.99 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=82.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..++..+ +..|.+ +.+.+.+++++.+++.++.++.
T Consensus 205 g~l~s~~~lG~iiG~li~G~----LsDR~G-------RR~~lii~lil~~i~~ll~afa--------------------- 252 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFFWGG----LADKLG-------RKQCLLICLSVNGFFAFFSSFV--------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566667777777777666 455543 2233566666666665555442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.+.++++...++.|+|.....|....++.+..|++.||..++.+...+.+|..++..++..+
T Consensus 253 -~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 253 -QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24667778889999999999999999999999999999999999999999999888766544
No 153
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.54 E-value=0.0087 Score=61.86 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=85.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..++ .+|.+ +.+.+.+|.++.+++++..+..
T Consensus 44 G~~~s~~~l~~~~~~~~~g~l----~dr~g-------~k~~~~~~~~~~~~~~~~~~~~--------------------- 91 (381)
T PRK03633 44 GVVSSSYFTGNLVGTLLAGYV----IKRIG-------FNRSYYLASLIFAAGCAGLGLM--------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 556667777777777776664 44443 2234677888888877765542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
-+.++++...++.|++.....|.....+.+..|++.|+..++.+.....+|..+|+.+.....
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 246667778899999999999998888889999999999999999999999999998887654
No 154
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.54 E-value=0.0035 Score=65.78 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=89.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 010589 272 LSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPI 351 (506)
Q Consensus 272 ~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 351 (506)
..++..+...+..|+... +.+|.+ +.+-+..|+++.+++.+..+.. .
T Consensus 56 ~~s~~~~~~~~~~~~~G~----l~dr~G-------rr~~l~~~~~~~~~~~~~~~~a----------------------~ 102 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGP----LSDRIG-------RRPVLITGALIFTLACAATLFT----------------------T 102 (413)
T ss_pred HHHHHHHHHHHHHHhhhH----HHHHcC-------chHHHHHHHHHHHHHHHHHHHc----------------------C
Confidence 334444555555555444 455553 2234667777777766655441 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
+.++++..-+++|+++.+..+.....+.+..|++.++..++.+.....++..+|+.++....... +|
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----gw--------- 169 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----HW--------- 169 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CH---------
Confidence 56677888899999998878877777778889999999999999999999999988887665211 12
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 010589 432 RLEHYYWLVSGIQVINLVYY 451 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~ 451 (506)
...|++.+++.++..+..
T Consensus 170 --~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 170 --KVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 445666666666554433
No 155
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.53 E-value=0.0056 Score=64.98 Aligned_cols=107 Identities=10% Similarity=-0.032 Sum_probs=74.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..|+..+ +.+|.+ +.+-+.+|.++.+++.+..++... . .
T Consensus 67 ~~~~~~~i~~~~~~~~~G~----l~Dr~g-------~k~~l~~~~~~~~i~~~~~~~~~~---------~---------~ 117 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGS----VSDRSN-------PRVFLPAGLILAAAVMLFMGFVPW---------A---------T 117 (452)
T ss_pred HHHHHHHHHHHHHHhhhhh----hhhccC-------CchhHHHHHHHHHHHHHHHHhhhc---------c---------c
Confidence 3445555666666666665 455543 223467788888877776665320 0 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHH
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGT 406 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~ 406 (506)
-+.++++...++.++++....|.....+.+..|++.|+..+|++.....+|..+.+
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 173 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPP 173 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHH
Confidence 24556677778999999988887778888999999999999999998888865433
No 156
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.51 E-value=0.00023 Score=61.17 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+...+...++..|.++++ +|.+.+++++...++|..+++.+.+++.+..+|+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 3566777788888999988899999999998765 5899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
++..+++.+...+.
T Consensus 124 ~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 124 AILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHhhc
Confidence 87777666554443
No 157
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.48 E-value=0.0063 Score=64.30 Aligned_cols=144 Identities=14% Similarity=0.093 Sum_probs=93.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..++..+ +.+|.+. .+-+.+|.++.+++.+..+.... .
T Consensus 64 g~~~~~~~~~~~~~~~~~G~----l~dr~g~-------~~~~~~~~~~~~~~~~~~~~~~~------------------~ 114 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGS----VSDRSNP-------RVFLPAGLILSAAVMLLMGFVPW------------------A 114 (438)
T ss_pred HHHHHHHHHHHHHhhhccch----hhhccCC-------ceehHHHHHHHHHHHHHHhcccc------------------c
Confidence 45555666666666666666 4455432 22356677777777666544210 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
..+.+.+....++.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+........ .+|
T Consensus 115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~w------- 184 (438)
T TIGR00712 115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF---NDW------- 184 (438)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh---hhh-------
Confidence 1234455667788999999888888899999999999999999999999999988876654332110 022
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..-|++.++++++..++.+++.|
T Consensus 185 ----~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 185 ----HAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34466666666665554444443
No 158
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.45 E-value=0.0039 Score=63.94 Aligned_cols=111 Identities=18% Similarity=0.175 Sum_probs=83.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+...+..|+..+ +.+|.+ +.+.+..|.++.+++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~----l~d~~g-------~~~~~~~~~~~~~i~~~~~~~~--------------------- 76 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGP----MADSFG-------RKPVILGGTLVFALAAVACALA--------------------- 76 (377)
T ss_pred HHHHHHHHHHHHHHHHhhch----HHhhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34455666666666666655 344432 2334677888877777766542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.+.++...++.+++.....+...+++.+..|++.|+..++++.....+|..+++.+.....
T Consensus 77 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 77 -QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134556677889999999999999999999999999999999999999999999988876654
No 159
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.45 E-value=0.011 Score=63.17 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=83.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..+ +.+|.+ +.+-+.++.++.+++.+..+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 105 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGA----MGDRYG-------RRLAMVISIVLFSVGTLACGFA--------------------- 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34455555555566666555 445543 2223666777777777666552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+....++.+..|++.|+..++.+.....+|..+++.+...+.
T Consensus 106 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 106 -PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 246677788899999999999999999999999999999999999999999999998887664
No 160
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.44 E-value=0.019 Score=60.86 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhh---
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGF--- 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F--- 111 (506)
+...+.+..++.+++.|..- .....+..-++++ +|+++.+++..+.++|.++++.+++++ ..+||+.-+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Confidence 57788899999999999988 8889999999865 699999999999999999999999995 468888644
Q ss_pred hhhHHHHHHHHHHHHh
Q 010589 112 GIPAIGMVMSVLAFVF 127 (506)
Q Consensus 112 ~i~ai~~~~~li~f~~ 127 (506)
.+....+.+++++-++
T Consensus 186 ~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 186 IISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555566666665444
No 161
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.43 E-value=0.014 Score=60.88 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=76.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..|+... +.+|.+ +.+-+.++.++.+++.+..+..
T Consensus 52 ~~~~~~~~~~~~~~~~~G~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~---------------------- 98 (406)
T PRK15402 52 TSMTAYLAGGMFLQWLLGP----LSDRIG-------RRPVMLAGVAFFILTCLAILLA---------------------- 98 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------ChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3344555555555565555 445543 2223556777767666554442
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++..+..+...+.+.+..|++.+...+++......++..+++.+.....
T Consensus 99 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 99 QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245567777889999999988999999999999999999999888777778888877766554
No 162
>PRK12382 putative transporter; Provisional
Probab=97.43 E-value=0.0078 Score=62.32 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=83.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..++ .+|.+ +.+-+.+|.+..+++.+....... ... ..
T Consensus 54 g~~~s~~~~~~~i~~~~~G~l----~Dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~------~~~--------~~ 108 (392)
T PRK12382 54 GIAVGIQFLATVLTRGYAGRL----ADQYG-------AKRSALQGMLACGLAGLAYLLAAI------LPV--------SA 108 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhHH----HHhhc-------chHHHHHHHHHHHHHHHHHHhhhc------ccc--------ch
Confidence 456667777777888887774 44443 222356666665555433222110 000 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++..-++.|+|+....|...+.+.+..|++.|+.+++.+.....+|..+++.++....
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 109 PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2356677788899999999999999999999999999999999999888889999888877664
No 163
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.42 E-value=0.015 Score=61.07 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=88.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..+ +.+|.+ ..+-+.+|+++.+++.+.......
T Consensus 41 g~l~s~~~~g~~i~~~~~g~----l~~r~G-------~r~~~~~g~~l~~~g~~l~~~~~~------------------- 90 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAI----FMKKLS-------YKAGILLGLFLYALGAFLFWPAAE------------------- 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------chHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 56777788888888888776 455543 334577888888888766543210
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++...++.++|..+..+....++.+.+|++.++..+++......+|..+++.+...+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245667778899999999999999999999999999999999999999999999988887653
No 164
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.41 E-value=0.0051 Score=61.62 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=87.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..++ .+|.+ +.+-+.++.++.+++.+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~~----~d~~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 84 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGYL----SDRFG-------RRRVLLLGLLLFALGSLLLAFA--------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHhC-------CchhhHHHHHHHHHHHHHHHHh---------------------
Confidence 455666777777777777663 44443 2224777888888887766552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
.+.++++...++.+++..+..+...++..+..|++.|+..++.......+|..+++.+...+.+
T Consensus 85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466777888999999999999999999999999999999999999999999999988876653
No 165
>PTZ00207 hypothetical protein; Provisional
Probab=97.41 E-value=0.011 Score=64.81 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=85.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
+.+-+.+|.++.++++++.++.. .+ ....+.|.+....++.|+|+....+.....+.+..| +.
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~---------~~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTF---------QE-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh---------cc-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 44567899999999998877731 01 001356667788899999999999988888888887 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 387 RSTAVALYWIAISMGNYIGTLVV-TLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~-~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
||.++|++....++|..+.+.+. .+... +...+++.++++.++..++.+.+.+..
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----------------~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAFFSD-----------------NTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 89999999999999997644443 33321 125667777887777777666665543
No 166
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.39 E-value=0.0062 Score=65.07 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=99.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-CCC
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP-KAI 348 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 348 (506)
+......++.-++..|+..++-+....|.++|. .-+..|.+..++++++++..... ....+ ++. ...
T Consensus 42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr------p~il~g~~~~~~~l~ll~~~~~~----~~~~~--~~~~~~~ 109 (477)
T TIGR01301 42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR------PFIAAGAALVAFAVILIGFAADI----GHLFG--DNLDKKT 109 (477)
T ss_pred HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH------HHHHHHHHHHHHHHHHHHhCchh----hhhcc--ccccccc
Confidence 455667888888888888876554433443221 12445677777777766653210 00000 000 000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhH--HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMR--STAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR 426 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~--g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~ 426 (506)
.....++.+..+.+..++--...+..-+++.++.|++.| +.+.+......++|+.+|..++.+.... .|++-.
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~-----~~~~~~ 184 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY-----KIFPFT 184 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----Hhcccc
Confidence 122234555566666667777777788999999999865 5788888889999999999888764211 112110
Q ss_pred -----CCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 427 -----NLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 427 -----~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
..-..++..-|++-+++.+++.++-++..|.+
T Consensus 185 ~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 185 KTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 00001344556555556666666665555543
No 167
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.35 E-value=0.0049 Score=66.09 Aligned_cols=142 Identities=11% Similarity=0.076 Sum_probs=95.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++......+...+..++..++ ..|.. .+.+-+.+|.++.+++++..++.
T Consensus 51 g~~~~~~~~~~~~~~~~~G~l----aDr~~------G~~~~l~~~~~~~~~g~~~~~~~--------------------- 99 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWWF----GDRVW------GTKKTMVLGGIVLMLGHFMLAMS--------------------- 99 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHH----HHhhc------chHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 344445555555555555553 33411 13334778888888888766652
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES---MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR 426 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~---~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~ 426 (506)
.+.++++...++.++|+.+..|....++.++.|++ .|+...+.++....+|..+|+.+...+....
T Consensus 100 -~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~---------- 168 (475)
T TIGR00924 100 -IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY---------- 168 (475)
T ss_pred -ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 13445666778899999999999999999988865 4888999999999999999999887775311
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 427 NLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 427 ~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
.+..-|...++.++++.++++...+.+
T Consensus 169 -----g~~~~f~~~~~~~~~~~l~~~~~~~~~ 195 (475)
T TIGR00924 169 -----GYHVGFNLAAVGMVIGLLTFFAGRHML 195 (475)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHHccccc
Confidence 124445555655556666665555544
No 168
>TIGR00898 2A0119 cation transport protein.
Probab=97.30 E-value=0.0017 Score=69.71 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=95.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++.+++..+..++..++..+ +..|.++ .+-+.++.++.+++.+..++.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~----l~Dr~Gr-------r~~~~~~~~~~~i~~~~~~~~--------------------- 177 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGY----LSDRFGR-------KKVLLLSTLVTAVSGVLTAFS--------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHH----hhhhccc-------hHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 45667777777887777766 4455432 223566766666666555442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.+.++++...++.|++.....+....++.+..|++.|+.+++++....++|..+++.+..++. +|
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------~w------- 242 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-------DW------- 242 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------HH-------
Confidence 256678888899999999999999999999999999999999999999999988887775553 12
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 010589 430 RGRLEHYYWLVSGIQVINLVYY 451 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~ 451 (506)
...|++.++.+++..+.+
T Consensus 243 ----r~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 243 ----RWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 455666666665555544
No 169
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.27 E-value=0.0037 Score=66.51 Aligned_cols=253 Identities=14% Similarity=0.163 Sum_probs=142.5
Q ss_pred hhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhcCcceeecCC
Q 010589 58 VAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKP 137 (506)
Q Consensus 58 ~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p 137 (506)
.+.++|...++ +|...+.+-.-++-.|..++|.+++++.+.+|+...|.++++..+++++..++.-|+-.+++.
T Consensus 134 ~a~vadis~~~------~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 134 FAYVADISSEE------ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhheeeccchh------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 33355554433 699999998888999999999999999999999999999999888888765555443222111
Q ss_pred CC-CchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhhhhccccCccCCCCCCCcccccc
Q 010589 138 GG-SPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLAT 216 (506)
Q Consensus 138 ~~-~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~ 216 (506)
.. .+. ++ ..+.+....+.. | +++..+
T Consensus 208 ~~~~~~-----------~~---~~~~~~~~~~~~----------------------~-----------------~~~~~~ 234 (463)
T KOG2816|consen 208 RSDATL-----------RE---LTPGSLDSSHVA----------------------D-----------------AFQSLT 234 (463)
T ss_pred cccccc-----------cc---cCCCcccchhhh----------------------h-----------------hhhhhc
Confidence 10 000 00 000000000000 0 000000
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHhccCCCCcceeC-cc----ccchhhHHHHHHHHHHHHHH
Q 010589 217 VHRVEELKSIIRMLPVWAAGILLVTASSHQH-SFTIQQARTMNTHLTHSFKIP-PA----SLSIFGILTMLIGLALYERI 290 (506)
Q Consensus 217 ~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~-s~~~~~~~~~~~~~~~gf~ip-~~----~~~~~n~l~iiil~pl~~~~ 290 (506)
.+.+.|..+.++.. .....+-...+.. ..+. ..+..+ +|.-. .+ +.+....+..+++.|++.+
T Consensus 235 --~~~~~r~~l~l~l~--~~~~~~~~~~~~~~~~~~----yl~~~f--~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~- 303 (463)
T KOG2816|consen 235 --KVGPDRLLLLLLLV--AFLSSLPEAGGASDVLLL----YLKAKF--GWNKKEFSDLLSLVSILGIISQLLLLPLLSS- 303 (463)
T ss_pred --ccCCCccchHHHHH--HHHHHHHHhcCceeEEEE----EEeeec--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 01222333322222 1122221111111 1100 011111 11110 11 2233344555555554433
Q ss_pred HHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHH
Q 010589 291 FVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFM 370 (506)
Q Consensus 291 ~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~ 370 (506)
..+.. . -+.+|+++-.+++++.++.+ +. |+.-........-...
T Consensus 304 -------~l~~~----~--~i~lGl~~~~~~~~~~af~~----------------------~~-w~~~~~~v~~~~~~~~ 347 (463)
T KOG2816|consen 304 -------ILGEK----R--LISLGLLSEFLQLLLFAFAT----------------------ET-WMMFAAGVVVALAGIV 347 (463)
T ss_pred -------HHhhh----h--HhhHHHHHHHHHHHHHHHhc----------------------cc-hhhhHHHHHHHhhcch
Confidence 22211 1 47789999999998888853 11 4444445555566788
Q ss_pred HHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 371 SVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT 416 (506)
Q Consensus 371 sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~ 416 (506)
.|...+++.+++.++.+|..+++....-++.+.+++.+.+.+...+
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877665544
No 170
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.27 E-value=0.02 Score=61.73 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=81.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
++.+...+..++..++..+ +.+|.+ +.+-+.+++++.+++.++.+... +. ...
T Consensus 60 ~~~~~~~ig~~ig~~~~g~----l~d~~G-------rr~~~~~~~~~~~v~~~~~~~~~---------~~-------~~~ 112 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGW----LADKLG-------RKRVYGMELIIMIIATVASGLSP---------GS-------SPK 112 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhc-------cHHHHHHHHHHHHHHHHHHHHcc---------Cc-------ccc
Confidence 3455555666666666555 445543 22235667777776665554421 00 001
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.+.++++..-++.|+++....|....++.+.+|++.||.+++++.....+|..++..+...+
T Consensus 113 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 113 SVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567888889999999999999999999999999999999999999999999988777544
No 171
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.26 E-value=0.056 Score=57.36 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
-+.++++.-++..++.++. .+.+.+...-+++|++|.... ....++++..|++.|++
T Consensus 94 vL~l~~l~Wsl~t~L~~fa----------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r 150 (511)
T TIGR00806 94 VLVLQALSFVCVWLLLLLG----------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR 150 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence 4666777666666666653 257778888899999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 390 AVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 390 ~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++|.+..+..+|..+++.+++++.
T Consensus 151 atsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 151 AAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998743
No 172
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.0047 Score=65.87 Aligned_cols=122 Identities=17% Similarity=0.268 Sum_probs=93.1
Q ss_pred HhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 010589 294 IARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVG 373 (506)
Q Consensus 294 l~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~ 373 (506)
+.+|++ ..+.+..+.++.+++-++.-+.. ..+.+.++..=+++|++|....|.
T Consensus 96 l~~k~G-------~r~v~~~~~~~sa~~t~l~P~aa--------------------~~~~~~~~~~R~lqGl~~g~~~pa 148 (466)
T KOG2532|consen 96 LADKFG-------ARRVFFISGLISALLTLLTPLAA--------------------SIGFYLLLVLRFLQGLGQGVLFPA 148 (466)
T ss_pred HHHHcC-------chHHHHHHHHHHHHHHHHHHHHH--------------------HhcchhhHHHHHHhHHHHhHHHhh
Confidence 566665 34458888888888777665542 234556778889999999999999
Q ss_pred HHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 010589 374 HLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 374 gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~ 453 (506)
.-....+.+|+..|++..++.+....+|+.++..+++..-..+ .+| +..|.+.++++++-.++++.
T Consensus 149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~---~GW-----------~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS---LGW-----------PSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC---CCC-----------chHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887777665321 145 45566788887777777666
Q ss_pred hhh
Q 010589 454 CAW 456 (506)
Q Consensus 454 ~~~ 456 (506)
+.+
T Consensus 215 ~~~ 217 (466)
T KOG2532|consen 215 FYS 217 (466)
T ss_pred Hhc
Confidence 544
No 173
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.21 E-value=0.031 Score=57.90 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=79.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..+ +.+|.+ +.+-+.++.++.+++.+.....
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~----l~Dr~g-------rr~~~~~~~~~~~~~~~~~~~~--------------------- 93 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGP----LSDRVG-------RRPVILVGMSIFILGTLVALFA--------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhh----HHHhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34455566666666666665 344443 2223566777777766554431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+...++..+..|++.++..++.+.+...++..+++.+.....
T Consensus 94 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 94 -HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred -ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667777889999988888888889888899999999999999988888888887776654
No 174
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.18 E-value=0.015 Score=60.05 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
++++++..-++.|+||.. .+.....+.+..|++.|+++++++.....+|..++..++..+.... +|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~----gW--------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG----GL--------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----ch---------
Confidence 677888889999999986 4556666788999999999999999999999999998887775321 34
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 432 RLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
...|+..++++++..++..+..|
T Consensus 144 --r~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 144 --QLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566667776666555444433
No 175
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.17 E-value=0.0007 Score=71.26 Aligned_cols=86 Identities=10% Similarity=0.210 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHH-HHHHHHHHHHhhHhhhhccc------cccc
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYY-FCMGIATLTALTVVVYIQDN------VGWG 108 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy-~~iNiG~~i~~~~~~~l~~~------~g~~ 108 (506)
.+.+++...+.+++.+...+....++.|.++++ +|.+++++++ +..++|..+||.++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 455667778888888888899889999998865 5999999997 56789999999999999987 4699
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 010589 109 LGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~f~~ 127 (506)
.+|.++++..+++.+++++
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888776666655443
No 176
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.17 E-value=0.0042 Score=66.13 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=81.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..++..+ +.+|.+ +.+-+.++.++.+++.+..+..+..... ...+ ..
T Consensus 59 ~~~s~~~ig~~~~~~~~G~----l~dr~G-------rr~~~~~~~~l~~i~~~~~~~~~~~~~~--~~~~--------~~ 117 (479)
T PRK10077 59 FCVASALIGCIIGGALGGY----CSNRFG-------RRDSLKIAAVLFFISALGSAWPEFGFTS--IGPD--------NT 117 (479)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhc-------cHHHHHHHHHHHHHHHHHHHhhcccccc--cccc--------ch
Confidence 4455566666677676666 445543 2223667777777776655543210000 0000 01
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
..+++++..-++.|++.....|...+++.+..|++.||.+++++.....+|..++..+....
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22445667779999999999999999999999999999999999999999988887665444
No 177
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.16 E-value=0.017 Score=61.53 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=85.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.++ .+-+..|.++.+++.+..+...
T Consensus 57 ~~~~s~~~~~~~~~~~~~G~----l~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~-------------------- 105 (455)
T TIGR00892 57 AWISSIMLAVLYAGGPISSI----LVNRFGC-------RPVVIAGGLLASLGMILASFSS-------------------- 105 (455)
T ss_pred HHHHHHHHHHHHHhhHHHHH----HHHHcCc-------hHHHHhhHHHHHHHHHHHHHhh--------------------
Confidence 44555555556666676655 4555432 2346667777777766655421
Q ss_pred cchHHHHHH-HHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 350 PISVFWLVP-QYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~-~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
+.+.++. .-++.++++....+.....+.+..| +.|+..+|++.....+|..+++.+...+.... +|
T Consensus 106 --~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~----gw------ 172 (455)
T TIGR00892 106 --NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF----GW------ 172 (455)
T ss_pred --hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh----Ch------
Confidence 2333333 3367788888776777777777665 68999999999999999998887776554311 12
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~ 453 (506)
..-|++.++++++..+..++
T Consensus 173 -----r~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 173 -----RGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 44566677766655544433
No 178
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.14 E-value=0.013 Score=69.68 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=81.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+..+++.|+..+ +..|++ +.+-+.++.++.+++.+...+...
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~----l~Dr~g-------rk~~l~~~~~~~~~~~~~~~~~~~------------------- 99 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGF----LADKFS-------KNRVIRIVKLFEVGLTLLIVLAYY------------------- 99 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhh----hccccc-------HHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 34455555666666666666 344443 222344555554444443333210
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.-++++++...++.|++..+..|...+++.+..|++.|+.++|.+.....+|..+|+.++.++.
T Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 100 LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1246677888899999999999999999999999999999999999999999999998887765
No 179
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.12 E-value=0.016 Score=60.40 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=85.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..++ .+|.+ +.+-+..|+++.+++.+..++.
T Consensus 47 g~~~s~~~~~~~l~~~~~g~l----~dr~G-------~r~~l~~~~~l~~~~~~~~~~a--------------------- 94 (393)
T PRK09705 47 ALLTALPVVTMGGLALAGSWL----HQHVS-------ERRSVAISLLLIAVGALMRELY--------------------- 94 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHC---------------------
Confidence 556666777777777777664 44543 3345888999999998887763
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++..-++.|+|+....+...+.+.+..| +.|+.++|.+......|..+++.+.....
T Consensus 95 -~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 95 -PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred -cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245556777899999999999999999888887 67999999999988888888888776554
No 180
>PRK10133 L-fucose transporter; Provisional
Probab=97.12 E-value=0.07 Score=56.54 Aligned_cols=113 Identities=10% Similarity=-0.005 Sum_probs=83.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..+ +.+|.+ +.+-+..|+++.+++.++......
T Consensus 64 gl~~~~~~~g~~i~~~~~g~----l~dr~G-------~r~~l~~g~~~~~~~~~l~~~~~~------------------- 113 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGI----LMKKLS-------YKAGIITGLFLYALGAALFWPAAE------------------- 113 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45556677777777777665 455543 333477888888888765432110
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.-+.++++...++.|+|.....+....++.+..|++.+...++.+...+++|..+++.++..+
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135667888899999999999999999999888888887788888888899999888877544
No 181
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.10 E-value=0.017 Score=60.24 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=82.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...++.|+..++ ..|.++ .+-+.++.++.+++.+..+..
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~l----aDr~gr-------r~vl~~~~~~~~~~~~~~~~~--------------------- 88 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAF----ADSFPK-------GRVMFIANGIKLLGCLLMLFG--------------------- 88 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHh----hhccCC-------chhhHHHHHHHHHHHHHHHHH---------------------
Confidence 566677778888888888774 455432 223666777666665544331
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+. +...+++|+++.+..|...+.+.+..|++.|+.++|.+.....+|..+|+.++.+..
T Consensus 89 -~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 89 -IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred -HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 345678999999999999999999999999999999999999999999999987775
No 182
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.10 E-value=0.026 Score=57.58 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=83.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMG-VGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~-iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
+++.+...+..++..|+..+ +.+|.+ +.+++. .+.++.+++.+..+..
T Consensus 36 g~~~~~~~~~~~~~~~~~g~----l~Dr~g-------~r~~~~~~~~~~~~~~~~~~~~~-------------------- 84 (375)
T TIGR00899 36 GLFYTGSAIVGIAVSQLLAT----RSDYQG-------DRKGLILFCCLLAALACLLFAWN-------------------- 84 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhccC-------CchHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 34555666666777777666 344442 222333 3555555554444331
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHH--HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTA--VALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR 426 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~--~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~ 426 (506)
.+.++++..-++++.++....|...+...+..|++.|+.. .+......++|..+++.++......- +|
T Consensus 85 --~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~----~~---- 154 (375)
T TIGR00899 85 --RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF----GF---- 154 (375)
T ss_pred --chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc----cc----
Confidence 2455555555677777777888888888888888777644 56666677788888887776654210 12
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 427 NLNRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 427 ~ln~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
...|++.+.+.++..++.++..|
T Consensus 155 -------~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 155 -------TVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 44566666666655555544444
No 183
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.09 E-value=0.032 Score=58.18 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=78.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.+ +.+-+..|.++.+++.+...... . .
T Consensus 51 g~~~~~~~~~~~i~~~~~g~----l~dr~g-------~k~~l~~~~~~~~~~~~~~~~~~---------~---------~ 101 (402)
T TIGR00897 51 ASAFTLYGIAAAISAWISGV----VAEIIG-------PLKTMMIGLLLWCVGHAAFIVFG---------L---------G 101 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHcC-------cHHHHHHHHHHHHHHHHHHHHHh---------c---------c
Confidence 45556677777777777766 344432 33346677777777755432211 0 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGN-YIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~-~l~~~l~~~~ 412 (506)
..+++.++...++.++|.....+.....+.+..|++.|+.++|++....++|. .+++.+....
T Consensus 102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12455556678888999888888888888899999999999999999999886 4676665443
No 184
>PRK11043 putative transporter; Provisional
Probab=97.05 E-value=0.057 Score=56.04 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=77.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+...+..++..+ +.+|.+ +.+-+..+.++.+++.+.....
T Consensus 44 g~~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 91 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGP----LSDRYG-------RKPVLLAGLSLFALGSLGMLWV--------------------- 91 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhh----HHhhcC-------CcHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34455556666666666655 445543 2234666777777666555442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+...+.+.+..|++.++...+.......++..+++.+...+.
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 92 -ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred -cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246667777789999988888888889999999999988888888778888888887776654
No 185
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.05 E-value=0.023 Score=59.42 Aligned_cols=116 Identities=14% Similarity=0.004 Sum_probs=83.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..+ +.+|.+ +.+-+.++.++.+++++..++... ..
T Consensus 55 g~~~~~~~l~~~~~~~~~G~----l~dr~g-------~~~~l~~~~~~~~~~~~~~~~~~~-------~~---------- 106 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGV----LADRYD-------RKKLILLARGTCGLGFIGLALNAF-------LP---------- 106 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHH----HhhhcC-------CceEEEehHHHHHHHHHHHHHHHH-------cC----------
Confidence 56667777777777777666 344443 222355677777777665543210 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.+++....++.+++..+..+...+.+.+..|++.++..++++.....+|..+|+.+...+.
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 1245666677788899999999999999999999999999999999999999999888887654
No 186
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.018 Score=61.82 Aligned_cols=96 Identities=20% Similarity=0.152 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
|.+-++.--+++|+-|-...|....+....=.++.|+..||+|+.+.++|+.+|+++..-+.....+ ....
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~---------~~~~ 203 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS---------GGLA 203 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC---------CCcC
Confidence 3444666679999999999999999999999999999999999999999999999998775432211 0111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 432 RLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
...+.|.+-++++++.+++.+++.|
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEec
Confidence 2356688888888888876666555
No 187
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.03 E-value=0.098 Score=56.32 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHH
Q 010589 286 LYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGV 365 (506)
Q Consensus 286 l~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~i 365 (506)
+...+|-|+..|.+....+ ++..-+.++.++.+++....+... + ..+.+|+....++.++
T Consensus 60 ~~~~l~gpl~Dr~~~~~~G-rrr~~ll~~~i~~~~~~~~~a~~~---------------~----~~~l~~l~~~~~l~~~ 119 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLG-RRRGWLLATQLLLLVAIAAMGFLE---------------P----GTQLRWLAALAVVIAF 119 (491)
T ss_pred HHHHHHHHHHHcccccCCC-CchHHHHHHHHHHHHHHHHHHHcC---------------C----cchHHHHHHHHHHHHH
Confidence 4555666777765211000 112235567777777766655531 0 2356778888889999
Q ss_pred HHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 366 AEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 366 gEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+-....+...+++.+..|++.|+..+++......+|..+++.+...+.
T Consensus 120 ~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 120 CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987776664
No 188
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.018 Score=59.42 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=88.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+|.+-|.+|++++++..+..+.. .|.+.+...+++.+.-+....|.....++..-|++
T Consensus 92 npr~fm~~gLilsai~nil~Gfs----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 92 NPRYFMAFGLILSAIVNILFGFS----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred CCceeehHHHHHHHHHHHHHhhh----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 67778999999999999998873 36677788889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVV--TLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~--~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
.||...++|..+..+|..+.+.+. ..+... ++|- .-|++=++++++.+++.+...
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~----~~w~-----------~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----GGWR-----------AAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHhc----cchh-----------HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988887 333321 0232 235555666666555555443
No 189
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.98 E-value=0.015 Score=62.58 Aligned_cols=111 Identities=8% Similarity=0.080 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
.........++.|+..+ +.+|+. .+.+-+.+|.++.+++.+.+++.. ..
T Consensus 56 ~~~~~~~~~~~~~~~G~----laDr~~------G~r~~~~~g~~~~~~g~~~~~~~~---------------------~~ 104 (489)
T PRK10207 56 FGAFAALVYGLISIGGY----VGDHLL------GTKRTIVLGAIVLAIGYFMTGMSL---------------------LK 104 (489)
T ss_pred HHHHHHHHHHHHhhHHH----hhhhcc------chHHHHHHHHHHHHHHHHHHHHhc---------------------cc
Confidence 33344444445555555 344411 234457889999999887776631 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES--MRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~--~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
...+....+++++|+.+..|...+++.++-|++ .|+...+.+++...+|..+|+.++..+..
T Consensus 105 ~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 105 PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111335678899999999999999999999877 45778999999999999999988887763
No 190
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.96 E-value=0.062 Score=54.72 Aligned_cols=62 Identities=6% Similarity=0.043 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+++...+++.++.-.+..|...+++.+.+|++.|+.+.|.......+|..+++.+.....
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666677778888888889999999999999999999999999999999999988876554
No 191
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.93 E-value=0.26 Score=51.11 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 361 CLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT 416 (506)
Q Consensus 361 ~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~ 416 (506)
++.+....-+...+=++..+.+|+...+...|+|.++--.++.+|+.+..++.+.+
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 56667777777888899999999999999999999999999999999999888766
No 192
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.87 E-value=0.024 Score=67.48 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
++|+++..-+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+++++..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888899999999999999999999999999999999999999999999999999987763
No 193
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.81 E-value=0.018 Score=61.90 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHH
Q 010589 285 ALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHG 364 (506)
Q Consensus 285 pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~ 364 (506)
|+-..+.-++..|.+ +.+-+.+++++.+++.+..++...+- .-| ...+++++..-+++|
T Consensus 71 ~ig~~~~G~l~Dr~G-------rr~~l~~~~~l~~i~~~~~a~~~~~~-----~~g---------~~a~~~l~~~R~l~G 129 (490)
T PRK10642 71 PLGGLFFGMLGDKYG-------RQKILAITIVIMSISTFCIGLIPSYA-----TIG---------IWAPILLLLCKMAQG 129 (490)
T ss_pred HHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHhcccHH-----HHH---------HHHHHHHHHHHHHHH
Confidence 333333444566654 33457888888888888777643100 000 112234677889999
Q ss_pred HHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 365 VAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 365 igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
+|+....|.+..++.+..|++.||.+++++.....+|..+++.+..++
T Consensus 130 ~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 130 FSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred hHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888888887666544
No 194
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.77 E-value=0.015 Score=64.35 Aligned_cols=146 Identities=10% Similarity=0.162 Sum_probs=90.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH----HHHHhh-----hcC--------------CC--CCCCC----CccchHH-HH
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIK----RKKVAA-----NHH--------------LL--DDPKA----IIPISVF-WL 356 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~----~~~~~~-----~~g--------------~~--~~~~~----~~~~s~~-wl 356 (506)
.++.+++|.++++++.++.++.... +++... +.. .+ ++++. ..+..+| .+
T Consensus 161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf 240 (735)
T KOG3626|consen 161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF 240 (735)
T ss_pred ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence 5567999999999999988876432 222111 000 00 00011 1122233 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh----cc-cC------CCCCcCCC
Q 010589 357 VPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH----KY-TG------SKNNWLPD 425 (506)
Q Consensus 357 i~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~----~~-~~------~~~~w~~~ 425 (506)
+.+-++.|+|+.-+.+.|.+++=+-+-++..+++.|+.+....+|=.+|.+++++.. +. .. .+.+|+..
T Consensus 241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGA 320 (735)
T KOG3626|consen 241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGA 320 (735)
T ss_pred HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhH
Confidence 567799999999999999999999999999999999999888777777766665544 22 10 01134432
Q ss_pred CCCcccchhHH-HHHHHHHHHHHHHHHHHhhhcccc
Q 010589 426 RNLNRGRLEHY-YWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 426 ~~ln~~~~~~~-~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
-+. |.+.++++++..+.++++=|.+..
T Consensus 321 --------WWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 321 --------WWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 222 444556666666666666555444
No 195
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.76 E-value=0.00022 Score=77.43 Aligned_cols=132 Identities=11% Similarity=0.149 Sum_probs=3.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHH----HHHHHhh--------
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEI----KRKKVAA-------- 337 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~----~~~~~~~-------- 337 (506)
+++.+.+-+.-+++..++.. +-.| . .+++.+++|.+++++|.++.++-.. +++....
T Consensus 41 G~i~s~~di~~~~~~~~vsy----~g~~----~---hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSY----FGGR----G---HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----Hhhh----c---CCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 44555666666666555554 2222 1 4667899999999999998877432 1111110
Q ss_pred hcCCC---------C---C----CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHH
Q 010589 338 NHHLL---------D---D----PKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMG 401 (506)
Q Consensus 338 ~~g~~---------~---~----~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig 401 (506)
+..++ + + ++.....-.++++.+-++.|+|..-..+.|.+|+=+-++++..+++.|+++....+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 00011 0 0 011112223567778899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhh
Q 010589 402 NYIGTLVVTLV 412 (506)
Q Consensus 402 ~~l~~~l~~~~ 412 (506)
-.+|.+++...
T Consensus 190 Pa~Gf~lg~~~ 200 (539)
T PF03137_consen 190 PALGFLLGSFC 200 (539)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88776666543
No 196
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=96.75 E-value=0.12 Score=55.44 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
.+..+.++.+++.+..+.. .+.+.++...++.|+++....+ ....+.+..|++.||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~----------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~ 159 (476)
T PLN00028 103 GSAFLLMLTAPAVFCMSLV----------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGT 159 (476)
T ss_pred HHHHHHHHHHHHHHHHHHh----------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeH
Confidence 4566777777766655442 1344555667889999876544 5567888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010589 390 AVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 390 ~~g~~~l~~aig~~l~~~l~~~ 411 (506)
.+|++.....+|..++..+...
T Consensus 160 a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 160 ANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987666666666554433
No 197
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.74 E-value=0.014 Score=59.70 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHH
Q 010589 309 QRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRS 388 (506)
Q Consensus 309 ~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g 388 (506)
+-+.+|.++.+++.++.+.... .. .......++++...+++|++.....+....++.+..|++.|+
T Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~--------~~------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 131 (394)
T TIGR00883 66 KTLVITLLMMGIGTLLIGLLPS--------YA------TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG 131 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhCCC--------hh------hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch
Confidence 3466788888887766665320 00 000112235667779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 389 TAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 389 ~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+++.+.....+|..+++.+.....
T Consensus 132 ~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 132 FYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776554
No 198
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.70 E-value=0.051 Score=58.65 Aligned_cols=115 Identities=10% Similarity=0.160 Sum_probs=79.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh--h
Q 010589 309 QRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES--M 386 (506)
Q Consensus 309 ~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~--~ 386 (506)
+-+.+|.++.+++....++.. .+.+++....+++++|..+..|...+++.++-|++ .
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~ 147 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR 147 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence 347778888888876665421 12334556778899999998898889999988764 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYT 459 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~ 459 (506)
++..+++++....+|..+|+.+...+.+. + ++..-|.+.++..+++.+.+++..++++
T Consensus 148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-------~--------g~~~~F~i~~i~~~i~~i~~~~~~~~~~ 205 (500)
T PRK09584 148 LDGAFTMYYMSINIGSFFSMLATPWLAAK-------Y--------GWSVAFALSVVGMLITVVNFAFCQRWVK 205 (500)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHh-------h--------CHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 45578888999999999999888777531 1 1244455555556666666666555444
No 199
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.70 E-value=0.077 Score=55.25 Aligned_cols=85 Identities=7% Similarity=-0.043 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
.+.++.++.++++...++.. ...+.|++...+++.++......|..-+++.+..|++.|+.
T Consensus 70 ~l~~~~~~~~l~~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~ 130 (402)
T PRK11902 70 WLLLTQVGLAASIAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGA 130 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Confidence 36677777777777665531 01346666777778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 390 AVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 390 ~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.++......+|..+++.+...+.
T Consensus 131 ~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 131 GAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999887776554
No 200
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.54 E-value=9.4e-07 Score=93.49 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc---ccccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD---NVGWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~---~~g~~~~F 111 (506)
+.+.+.++..+.++|.|+.-+....++.+..+++ .|+....++..+.++|.+++.++.-.+.+ +.+|++.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 6788889999999999999999999999888765 58888889999999999998876544433 34599999
Q ss_pred hhhHHHHHHHHHH
Q 010589 112 GIPAIGMVMSVLA 124 (506)
Q Consensus 112 ~i~ai~~~~~li~ 124 (506)
.++++..++.++.
T Consensus 175 ~~~~~~~l~~~~~ 187 (451)
T PF00083_consen 175 IFGAIPSLLVLLL 187 (451)
T ss_pred ccccccccccccc
Confidence 8887766554433
No 201
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.53 E-value=0.071 Score=55.62 Aligned_cols=100 Identities=11% Similarity=0.046 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC--C-cCCCCCCc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKN--N-WLPDRNLN 429 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~--~-w~~~~~ln 429 (506)
.+++...-.+++..+.-..|+|.|+.....=+...+...|+- ...|+..+..+...........+ + |++
T Consensus 359 ~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll---~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~----- 430 (480)
T KOG2563|consen 359 SVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLL---NLSGQIFGVILVFIMGILAEDLGPPGNTFP----- 430 (480)
T ss_pred eEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeE---EeehhHHHHHHHHHHHHHhhccCCCCCCcc-----
Confidence 345555557788888889999999999876566666666643 33344444433333222111100 1 221
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccccCccc
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEV 466 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~~ 466 (506)
.. +.++..+.+.+++-.++.+.|+++++|+.
T Consensus 431 ----~~--i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 431 ----AN--IFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred ----ch--hHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 12 23445555566666667788877776654
No 202
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.48 E-value=0.27 Score=50.85 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=70.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHH---HHHHHHHHHHHHHHHHHHHHHHhHcccC
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFW---LVPQYCLHGVAEVFMSVGHLEFLYDQSP 383 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~w---li~~~~l~~igEl~~sp~gl~~~~~~aP 383 (506)
+..-+..|.++.+.+..++...-... +. .+ .+ + ..-++.| ....|++.|+|--..+...++++.+.+|
T Consensus 49 RtPyI~~G~~~~~~g~~~ap~a~~~l---~~-~~--~~--~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~ 119 (403)
T PF03209_consen 49 RTPYIWGGTLLQAGGLAIAPFALLLL---AE-SG--QQ--S-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAP 119 (403)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH---cc-cc--cc--c-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC
Confidence 34457788888888776665543211 00 00 00 0 0122333 4578999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 384 ESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 384 ~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++.|+...++-+...-+|..+++.+.+..-
T Consensus 120 e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 120 EERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999887776443
No 203
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.38 E-value=0.22 Score=52.41 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHH
Q 010589 284 LALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363 (506)
Q Consensus 284 ~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~ 363 (506)
.|+-..++-++..|.+ +.+-+.+++++.+++.+..++.... ..-| ..++.+++..-+++
T Consensus 76 ~~ig~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~l~~~R~l~ 134 (432)
T PRK10406 76 RPIGGWLFGRIADKHG-------RKKSMLISVCMMCFGSLVIACLPGY-----ETIG---------TWAPALLLLARLFQ 134 (432)
T ss_pred HHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHHhhcCCc-----hhHH---------HHHHHHHHHHHHHH
Confidence 3444445555666654 3335778888888877766653200 0000 12345677788999
Q ss_pred HHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 364 ~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
|+|+....|....++.+..|++.||.+++++......|..++..+...+.
T Consensus 135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888776654443
No 204
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.08 Score=52.03 Aligned_cols=97 Identities=9% Similarity=0.113 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHH
Q 010589 358 PQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYY 437 (506)
Q Consensus 358 ~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~ 437 (506)
....++|++.-++.-.---.+..+.|++.-|.+-|.-.....+|-.+.+.+...+.+.+ |++. .++.||
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~---g~y~--------~le~ff 425 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD---GSYD--------NLEAFF 425 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC---Cchh--------hHHHHH
Confidence 45577777777777767778889999999999999999988888888888887776432 1111 247778
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCccc
Q 010589 438 WLVSGIQVINLVYYVICAWFYTYKPLEEV 466 (506)
Q Consensus 438 ~~la~l~~l~~~i~~~~~~~y~~~~~~~~ 466 (506)
...+.+++.+..+.+...|+ +..|.+..
T Consensus 426 l~~~~~aL~svgil~~~N~k-q~gnLN~~ 453 (459)
T KOG4686|consen 426 LIIGLMALTSVGILFYLNKK-QSGNLNRK 453 (459)
T ss_pred HHHHHHHHHHHHHHhheecc-ccCCCCCC
Confidence 77777777777666665543 34444433
No 205
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.31 E-value=0.043 Score=57.55 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=76.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
.+.++..+.-.+..|+..++.+..-+|.+ .....+.+|.++.+++++...... .. ...
T Consensus 39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~G------rrr~~i~~~~~~~~i~~~~~~~~~--------~~--------~~~ 96 (437)
T TIGR00792 39 TLFLVARILDAITDPIMGNIVDRTRTRWG------KFRPWLLIGAIPFSIVLVLLFTTP--------DF--------SAT 96 (437)
T ss_pred HHHHHHHHHHHhccchheEeeecCCCCCC------CcchhHHHhHHHHHHHHHHHHhCC--------CC--------Ccc
Confidence 44455556666666666554332222222 122346678777777766655421 00 012
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQS-PESMRSTAVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~a-P~~~~g~~~g~~~l~~aig~~l~~~l~~~ 411 (506)
...+|.+..+++.+++..+..+.-.++....+ |++.|+...+.......+|..+++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~ 158 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP 158 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888889999999888887788888877 56889999998888888888777665433
No 206
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.30 E-value=0.15 Score=51.85 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=77.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+++.+...+..|+..++ .+|.+ +.+.+.+|.++.+++.+.. .
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~-~---------------------- 83 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWL----ARRFG-------EERSVAAGLLLIAAGILIR-S---------------------- 83 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHhC-------chHHHHHHHHHHHHHHHHH-H----------------------
Confidence 566777888888888887774 44543 2233666776666655443 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++...++.++|..+..+.....+.+..|+ .|+.+++.+.....+|..+++.+.....
T Consensus 84 ~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 84 APGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred hccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345566777889999988887777777777764 7999999999999999988887765553
No 207
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=96.15 E-value=0.44 Score=50.82 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=60.6
Q ss_pred HHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 010589 292 VPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMS 371 (506)
Q Consensus 292 ~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~s 371 (506)
-++..|.+ +.+-+.+++++.++..+..+... ++- ..|.+.++...++.|++ ....
T Consensus 91 G~l~Dr~G-------~R~v~~~~~ll~~i~~~~~~~a~--------~~~---------~~s~~~lli~r~l~Gig-g~~f 145 (462)
T PRK15034 91 SFMVPIFG-------GRRWTVFSTAILIIPCVWLGIAV--------QNP---------NTPFGIFIVIALLCGFA-GANF 145 (462)
T ss_pred HHHHHHhC-------ChHHHHHHHHHHHHHHHHHHHHH--------ccc---------CCCHHHHHHHHHHHHHH-HHhH
Confidence 33566654 33356777777777776665521 000 13567788888999998 5577
Q ss_pred HHHHHHhHcccChhhHHHHHHHHHHHHHHHHHH
Q 010589 372 VGHLEFLYDQSPESMRSTAVALYWIAISMGNYI 404 (506)
Q Consensus 372 p~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l 404 (506)
+.++..+.+..|++.||+++|++.....+|..+
T Consensus 146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l 178 (462)
T PRK15034 146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSV 178 (462)
T ss_pred HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence 889999999999999999999995333344433
No 208
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.13 E-value=0.26 Score=53.55 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=84.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+..+....+-.+++.|+...+.+.+-|| +-+...-++.++..+.+++... .|
T Consensus 48 alv~~a~~LP~~Llsl~aG~laDr~drr-----------rili~~~~~~~~~~~~L~~l~~--------~~--------- 99 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALADRFDRR-----------RILILSQLLRALVALLLAVLAF--------FG--------- 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccch-----------HHHHHHHHHHHHHHHHHHHHHH--------hC---------
Confidence 5667778888888888877754333222 2244455444444444443321 12
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..++|.++..-++.+++..+..|.-++.+-++.|++.-..+.++......++..+|+.+++++-
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4677777788899999999999999999999999999999999998888888888887776553
No 209
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.07 E-value=0.49 Score=49.05 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhH--HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMR--STAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~--g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
+.+++.....+.+..+....|...+.+.+..|++-| +.+++......++|..+++.+...+.+.- +|
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~----gw------- 172 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF----SF------- 172 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc----Ch-------
Confidence 344444444445555557788888888777666533 45667888888899999988887775311 12
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..-|++.+++.++..+..+...|
T Consensus 173 ----~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 ----TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence 34466666666655554444333
No 210
>PRK09952 shikimate transporter; Provisional
Probab=96.06 E-value=0.098 Score=55.29 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHH
Q 010589 282 IGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYC 361 (506)
Q Consensus 282 il~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~ 361 (506)
+..|+-..+.-++.+|.+ +.+-+.+++++.+++.+..++.... ..-+ ..+++.++..-+
T Consensus 75 ~~~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~l~~~R~ 133 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSF-----STIG---------WWAPVLLVTLRA 133 (438)
T ss_pred HHHhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcH-----HHHH---------HHHHHHHHHHHH
Confidence 334555555556666654 3344677888888877766653200 0000 011224666778
Q ss_pred HHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 362 LHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 362 l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++|+++....|....++.+..|++.||.+++.......+|..++..+...+.
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988876665543
No 211
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=95.94 E-value=0.29 Score=53.63 Aligned_cols=136 Identities=16% Similarity=0.242 Sum_probs=86.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
..|+...+.+..-+..|++.++-+-+-|| .-+..|.++..+|.++.+-.+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-------------------
Confidence 36788888888888888888854433333 236778888888877765421
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
+++. ++-..++.++|-...... ...+.+..|.+.|....++..+...+....|+.+....... ++|
T Consensus 130 -~~~~--~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~----~~W------ 195 (599)
T PF06609_consen 130 -NMNT--FIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH----SGW------ 195 (599)
T ss_pred -cHHH--HHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC----CCc------
Confidence 2333 677778888886555543 44578889999998877766655555555566666554321 145
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~ 453 (506)
.+.|++.+++..+++++.++
T Consensus 196 -----Rw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 196 -----RWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred -----chHHHHHHHHHHHHHHHHHH
Confidence 34455556666655554443
No 212
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=95.80 E-value=0.19 Score=54.34 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=87.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..++..++...+-|| +-+.++.++..+|.++.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5777777787788877777754433333 23777888888887777663
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
-++++++..-++.|+|-.+.+...--++...+|++.||.+.+.+.+...+|..++..++...
T Consensus 140 -~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 140 -PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred -hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 26788999999999999999999999999999999999999999999999999885444333
No 213
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.77 E-value=0.39 Score=49.71 Aligned_cols=116 Identities=5% Similarity=-0.113 Sum_probs=63.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+...+..|+..++ ..|.++| +.+..+++..++++........... .
T Consensus 41 g~~~~~~~l~~~i~~~~~G~l----~Dr~grr-------~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 94 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGLI----SDKLGLK-------KHLLWIISGLLVLFAPFFIYVFGPL---------------L 94 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHHHHHHHHHHHhhhH---------------H
Confidence 456777888888888887774 4444321 1233343333333322111100000 0
Q ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISV-FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~-~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+. +..+...++.+++.....|...+++.+..++ ++...|.......+|..+++.++.++.
T Consensus 95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence 0112 2345567788888888888887777665443 334455555556677777777766554
No 214
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.69 E-value=0.036 Score=56.61 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
.+.+|.+..++++++.+.. .+...++.+=++.|+.-..+++. -+++.+.++++.|++
T Consensus 100 vll~c~~~va~s~ll~~~S----------------------~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l 156 (451)
T KOG2615|consen 100 VLLACLIGVALSYLLWALS----------------------RNFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPL 156 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccc
Confidence 4778888888888877763 23434556678888888888874 589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 390 AVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 390 ~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
.|++...+.++|..+|++++.....
T Consensus 157 ~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 157 GMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred eeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999988765
No 215
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.53 E-value=0.0097 Score=62.36 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHH-HHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNW-YYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~-fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
++.+++...+.+++.+...+.....+.+.++++ .+...+.. +.++.++|..+++.+.|++.+..||+..|.+.
T Consensus 315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 455556666677777766666667777777644 35555544 66778999999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 010589 115 AIGMVMSVLAFV 126 (506)
Q Consensus 115 ai~~~~~li~f~ 126 (506)
++..++..++.+
T Consensus 389 ~~~~~i~~~~~~ 400 (420)
T PRK09528 389 GGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
No 216
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.49 E-value=0.67 Score=49.90 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh--hH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES--MR 387 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~--~~ 387 (506)
-+.+|.++.+++.++++..+ .+..++.....+..+|..+..|...+++.++-|++ .|
T Consensus 78 ~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R 136 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRR 136 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccc
Confidence 36788888888876554311 11122333444555666666676678888888875 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 388 STAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 388 g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
+...++++....+|..+++.+...+.... + +..-|.+.++.++++.+.++...|++
T Consensus 137 ~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----G-----------w~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 137 DGGFSLMYAAGNVGSIIAPIACGYAQEEY----S-----------WAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHhhh----C-----------hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88999999998899999998887775311 1 23445555555555555655444433
No 217
>PRK15075 citrate-proton symporter; Provisional
Probab=95.47 E-value=0.65 Score=48.88 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch---HHHHHHHHH
Q 010589 285 ALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS---VFWLVPQYC 361 (506)
Q Consensus 285 pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s---~~wli~~~~ 361 (506)
|+-..+.-++.+|.+ +.+-+..+.++.+++.+..++.... . ... ..+++..-+
T Consensus 70 ~ig~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~l~~~~~~~--------~---------~~~~~~~~~l~~~R~ 125 (434)
T PRK15075 70 PLGAIVLGAYIDRVG-------RRKGLIVTLSIMASGTLLIAFVPGY--------A---------TIGLAAPLLVLLGRL 125 (434)
T ss_pred hhHHHHHHHHhhhhc-------hHHHHHHHHHHHHHHHHHHHhCCcH--------H---------HHHHHHHHHHHHHHH
Confidence 333344444555554 2334677888777777766653200 0 010 123456668
Q ss_pred HHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 362 LHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 362 l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
+.|+++....|....++.+..|++.|+.+++++.....+|..+++.++..+
T Consensus 126 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 126 LQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988888889999999999999999998887777777666665544
No 218
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.04 E-value=0.26 Score=52.61 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVV 409 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~ 409 (506)
+...++.+=++.|+...+.....-=|+...||++.||.+..+.-+...+|..++..++
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 4556788889999999999999999999999999999999999999999999987665
No 219
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=94.75 E-value=0.056 Score=56.53 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=58.1
Q ss_pred CcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHH----HHHHHhhHhhhhcc
Q 010589 28 CREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGI----ATLTALTVVVYIQD 103 (506)
Q Consensus 28 ~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNi----G~~i~~~~~~~l~~ 103 (506)
|+++...-+..+..-..++++|.|+=-|..++...+.-.. ++|+...++.+..-+. |+.++.++++....
T Consensus 136 ~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~------~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~ 209 (538)
T KOG0252|consen 136 GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANK------KTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEK 209 (538)
T ss_pred CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhh------ccccceeEEEEEecchhHhhccHHHHHHHHHHhc
Confidence 3444444567777788899999999888888776655433 2677766666554444 45555555554433
Q ss_pred c-----------cccchhhhhhHHHHHHHHHHHHhcCc
Q 010589 104 N-----------VGWGLGFGIPAIGMVMSVLAFVFGSP 130 (506)
Q Consensus 104 ~-----------~g~~~~F~i~ai~~~~~li~f~~~~~ 130 (506)
. .=||..|++.+ +.+++++.++.+
T Consensus 210 ~~~~~~~~~~ld~vWRl~~glg~---vpa~~~ly~Rl~ 244 (538)
T KOG0252|consen 210 IFNGPSTYPHLDGVWRIIFGLGA---VPALLVLYFRLK 244 (538)
T ss_pred cCCCCCCchHHHHHHHHHHHHHH---HHHHHHHHhhhc
Confidence 2 34888887544 445555555443
No 220
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=94.74 E-value=0.081 Score=56.70 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchhhh
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLGFG 112 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~F~ 112 (506)
.+.+.+++.-+++++..|...+..-++.+++.|++ +...+|++|.+.--..+++||++.|.+.+..| .|++|.
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 35777888778999999999999999999999976 57999999999999999999999999988776 889999
Q ss_pred hhHHHHHHHHHHHHhc
Q 010589 113 IPAIGMVMSVLAFVFG 128 (506)
Q Consensus 113 i~ai~~~~~li~f~~~ 128 (506)
...+.++++++++...
T Consensus 452 ~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 452 FLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888888876544
No 221
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=94.71 E-value=0.27 Score=49.45 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
|..+.+..+++.+.|-.+..+....++....|++.++..+++-...+++|..+++.+...+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999998665
No 222
>PRK09669 putative symporter YagG; Provisional
Probab=94.53 E-value=0.067 Score=56.59 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccc-hhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRK-ATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWG 108 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~-~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~ 108 (506)
+.+.+++..++.++|.+..-+...++++|..+.++ ..++++.+..|+.+.++.++|..+|+.++|++-+..||.
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45667777788999999999999999999987543 224445667889999999999999999999988877774
No 223
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.53 E-value=0.96 Score=48.23 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 358 PQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 358 ~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
..-++.|++--+++....+...++.-+..++.++|++-+..+++..+++.+......
T Consensus 393 ~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 393 SFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred ehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 344667777778888888999999999999999999999999999999988876653
No 224
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=94.52 E-value=0.24 Score=51.09 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh---h
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES---M 386 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~---~ 386 (506)
-+.+|.++..+|++++.+... ... .....+...+..+..++++|..+.-|...++..+|-+++ .
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~-------~~~------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAI-------PPS------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHT-------SSS------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred hhhHHHHHHHHHHHHhHHHHh-------cch------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 367889999999988666431 000 001244566888889999999999999999999998776 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
+...-..|+...-+|..++..+...+++.. .+...|++.++.++++.++|+...++|+++
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~~---------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQNY---------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhcccc---------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 555666778889999999887776665311 235667888888888888888888888776
No 225
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=94.45 E-value=1.2 Score=45.88 Aligned_cols=60 Identities=8% Similarity=-0.160 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.|+++...++++.+.....|...+++.+ +++.|+...|......++|..+++.+.....
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~ 152 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI 152 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888888887778887777643 3567889999999999999999988776665
No 226
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=94.39 E-value=0.24 Score=54.21 Aligned_cols=214 Identities=19% Similarity=0.117 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
....|+...+...+ +..++|+.++.|+++...- ....+.-+|...|+.||+++++..+. .|++..
T Consensus 59 nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l--~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~ 123 (571)
T KOG1237|consen 59 NLVTYLTLELHASG-GGAANNVNAFGGTQFLLPL--LGAFLADSFLGRYFTINIGSLISLLG------------LFGLTL 123 (571)
T ss_pred HHHHHHHHHhccch-HHHHHHHHHHhhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 34455555555555 8889999999999998632 12468889999999999999987644 566666
Q ss_pred HHHHHHHHHHHhcCcceeecC-CCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 116 IGMVMSVLAFVFGSPLYVKLK-PGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 116 i~~~~~li~f~~~~~~~~~~~-p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
..++.++..+.+ .+.... ..++|-+....++..++.......-. .+.++++.
T Consensus 124 ~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg------------------------~r~~~~~f 176 (571)
T KOG1237|consen 124 SAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGG------------------------IRPCLLAF 176 (571)
T ss_pred HHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCC------------------------CCCcchhh
Confidence 666666554433 110000 11222222233333333321110000 00001111
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcc-CCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNT-HLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~-~~~~gf~ip~~~~~ 273 (506)
.+-. +.+.+.++++. ....+.|..+.|..+.++.+...+.. +.. +|.+-++..+
T Consensus 177 GadQ----------------fd~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~ 231 (571)
T KOG1237|consen 177 GADQ----------------FDELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPT 231 (571)
T ss_pred cccc----------------cCccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHH
Confidence 1000 00111122221 22456777777777766655543332 222 6777778889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSS 326 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~ 326 (506)
..|.+.++++.|.... .+. +.| .-.++..++-++.+++.-.-.
T Consensus 232 ~~~~lai~iF~~g~~~-----y~~---~~p--~gsp~t~i~~Vlvaa~~k~~~ 274 (571)
T KOG1237|consen 232 VLNALAILIFLPGFPF-----YRY---KKP--RGSPKTRIGQVLVAAAFKRKA 274 (571)
T ss_pred HHHHHHHHHHHcCcee-----EEe---eCC--CCCchhHHHHHHHHHHHHHhc
Confidence 9999999999887554 222 112 222677788888888776544
No 227
>PRK09848 glucuronide transporter; Provisional
Probab=94.32 E-value=0.066 Score=56.66 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccc-hhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccc-----
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRK-ATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWG----- 108 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~-~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~----- 108 (506)
+.+.+++++.+.++|.++..+...++.+|..+.++ ..++++.+.+++.+.++..+|..+|+.+.+.+-+..||.
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~ 397 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ 397 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 35566777888999999999999999999887543 123345688889999999999999999988876655652
Q ss_pred ---------hh-hhhhHHHHHHHHHHH
Q 010589 109 ---------LG-FGIPAIGMVMSVLAF 125 (506)
Q Consensus 109 ---------~~-F~i~ai~~~~~li~f 125 (506)
.. ..+|++.++++++++
T Consensus 398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~ 424 (448)
T PRK09848 398 TPEVIMGIRTSIALVPCGFMLLAFVII 424 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 245666666666654
No 228
>PRK11462 putative transporter; Provisional
Probab=94.30 E-value=1.5 Score=46.78 Aligned_cols=85 Identities=7% Similarity=0.047 Sum_probs=63.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-hhhH
Q 010589 309 QRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-ESMR 387 (506)
Q Consensus 309 ~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-~~~~ 387 (506)
.-+.+|.+..++++..+.... +.+ ......|....|++..++.-+....-.++...+++ ++.|
T Consensus 81 p~il~g~i~~~i~~~llf~~p--------~~s--------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eR 144 (460)
T PRK11462 81 PWVLFGALPFGIVCVLAYSTP--------DLS--------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQR 144 (460)
T ss_pred hhHhHHHHHHHHHHHHHHhCC--------CCC--------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHH
Confidence 346678777777776554321 000 01225789999999999999999999999999998 6888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010589 388 STAVALYWIAISMGNYIGTLVV 409 (506)
Q Consensus 388 g~~~g~~~l~~aig~~l~~~l~ 409 (506)
+..++.......+|..++..+.
T Consensus 145 t~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 145 ISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888877766554
No 229
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=94.14 E-value=3.2 Score=43.03 Aligned_cols=87 Identities=7% Similarity=0.019 Sum_probs=65.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
...-+..|+.+++++..+..=... .-++-..+...++++.|-.+...++..++..+.|++.
T Consensus 77 yk~gi~lgL~l~avg~~lF~pAa~-------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~ 137 (422)
T COG0738 77 YKAGIVLGLLLYAVGAALFWPAAS-------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES 137 (422)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh-------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh
Confidence 344588899999988776543210 1234456677899999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.+.-|.+--...++|..+++.+++..
T Consensus 138 a~~rlnl~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 138 AAFRLNLAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77777777777777777777777544
No 230
>PRK10429 melibiose:sodium symporter; Provisional
Probab=94.02 E-value=0.85 Score=48.71 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHccc-ChhhHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQS-PESMRS 388 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~a-P~~~~g 388 (506)
-+.+|.+..++++..+.... + .......+|.+..|++..++.-+..+.-.++...++ +++.|+
T Consensus 79 ~il~g~i~~~i~~~llf~~p----------~------~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~ 142 (473)
T PRK10429 79 WILIGTLANSVVLFLLFSAH----------L------FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRERE 142 (473)
T ss_pred hHhhhhHHHHHHHHHHHcCC----------C------CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHH
Confidence 46678888787765553310 0 000124678888999999999999999999999998 478888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010589 389 TAVALYWIAISMGNYIGTL 407 (506)
Q Consensus 389 ~~~g~~~l~~aig~~l~~~ 407 (506)
...+.=.....+|..+.+.
T Consensus 143 ~l~~~~~~~~~ig~~~~~~ 161 (473)
T PRK10429 143 QLVPYPRFFASLAGFVTAG 161 (473)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877634445555554443
No 231
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=93.84 E-value=4.8 Score=36.23 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+.+++.-++.|+|+.+.....-.++.+.+.++.+++..|+++.....+..+|.++...+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999998888887776654
No 232
>PF13347 MFS_2: MFS/sugar transport protein
Probab=93.35 E-value=0.47 Score=49.82 Aligned_cols=116 Identities=14% Similarity=0.205 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhh----hhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHH
Q 010589 280 MLIGLALYERIFVPIAR----RFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFW 355 (506)
Q Consensus 280 iiil~pl~~~~~~pl~~----r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~w 355 (506)
++...++.|-+.+|+.- |.+.|.. +...-+.+|.++.++++..+.... ..+ ........|
T Consensus 42 i~~~~~i~dai~dp~~G~~sDr~~tr~G--rrrp~~l~g~i~~~~~~~llf~~~--------p~~------~~~~~~~~~ 105 (428)
T PF13347_consen 42 ILLVGRIWDAITDPLIGYLSDRTRTRWG--RRRPWILIGAILLALSFFLLFSPP--------PAG------LSFTAKLVW 105 (428)
T ss_pred HHHHHHHhhhhcCCcEEEEEeeeccccc--ccceEeehhhHHHHHHHHHhhccc--------cch------hhhhhHHHH
Confidence 44445666666666442 2111221 233457789899999888776531 000 001235678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHcccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010589 356 LVPQYCLHGVAEVFMSVGHLEFLYDQSPE-SMRSTAVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 356 li~~~~l~~igEl~~sp~gl~~~~~~aP~-~~~g~~~g~~~l~~aig~~l~~~l~~~ 411 (506)
+...|++..++--+....-.++..+.+++ +.|....+.=.+...+|+.+...+...
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~ 162 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI 162 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999999999999999985 678888888777777888655444433
No 233
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=93.16 E-value=5.2 Score=41.16 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGR 432 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~ 432 (506)
.+|++...++.++......+..-.++.+..+++.++.+.+.......+|..+|+.+........ +|
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~----gw---------- 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF----GQ---------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CH----------
Confidence 4455555555666666677777777888888888899998888888889999886665443211 12
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010589 433 LEHYYWLVSGIQVINLVYYV 452 (506)
Q Consensus 433 ~~~~~~~la~l~~l~~~i~~ 452 (506)
..-|++.+++.++..+..+
T Consensus 163 -~~~f~~~a~l~~~~~~~~~ 181 (390)
T TIGR02718 163 -RPAFLLVACVPLASLVCVL 181 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 3456667776665555543
No 234
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.00 E-value=2.4 Score=43.71 Aligned_cols=60 Identities=10% Similarity=-0.092 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.|.++....+.+++.....|...+.+.+.. +.++..++......++|..+|+.++....
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~ 152 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLV 152 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4555556677788888878887666655543 33555566666666777888877777664
No 235
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=91.97 E-value=0.0025 Score=67.38 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
++++++..-++.|+|-....+....++...+|++.|+.+.+++...+.+|..++..+...+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5677888889999999999999999999999999999999999999999999887776544
No 236
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=91.83 E-value=5.9 Score=42.16 Aligned_cols=98 Identities=11% Similarity=0.172 Sum_probs=69.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPE-SMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~-~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
..++.|....|.+++++.-++...--++.....++ +.|....+..+....+|+.+...+...... ++++ -
T Consensus 109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~-------~~g~--~ 179 (467)
T COG2211 109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK-------LFGG--G 179 (467)
T ss_pred CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCC--C
Confidence 35778899999999999999988888888877655 778888998999999998887666543331 2322 1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
+ +...|+....++++++.+.++++.+.-
T Consensus 180 ~--~~~g~~~~~~~~~vi~~i~~l~~~~~v 207 (467)
T COG2211 180 D--KALGYQGTALVLGVIGVILLLFCFFNV 207 (467)
T ss_pred c--chhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 124666666667777666666666543
No 237
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=91.73 E-value=2.2 Score=44.58 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=59.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+-..|+.+..+++++|+++.+.. -+.++-+...++.+++-.+.-.+-+++....-
T Consensus 87 ~y~~Ri~~~~~l~~~g~l~va~~----------------------~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~--- 141 (402)
T PF02487_consen 87 PYWIRILICVALSAAGMLLVAFS----------------------PSVWVRLLGVVLASLSSGLGEVTFLSLTHFYG--- 141 (402)
T ss_pred cchHHHHHHHHHHHHHHhheeec----------------------cchhHHHHHHHHHhhhhhhhHHHHHHHHHhcC---
Confidence 45678999999999999877662 24555667777777777777777777755432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
....+.|-..++.+..+|+.......
T Consensus 142 --~~~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 142 --KSSLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred --ccccccccCCcChhhHHHHHHHHHHH
Confidence 24578899999999999887665554
No 238
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=91.44 E-value=0.32 Score=50.95 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=63.9
Q ss_pred HHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHH-HHHHHHHHhhHhhhhccccccc------hhhh
Q 010589 40 YISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFC-MGIATLTALTVVVYIQDNVGWG------LGFG 112 (506)
Q Consensus 40 ~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~-iNiG~~i~~~~~~~l~~~~g~~------~~F~ 112 (506)
.++..+-++..|++-.....++.+..+++ .|.++-++|... .-+|..+|..++|++.|++|-+ ..|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~------~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPE------LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCcc------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 33445578888888888888888888766 478888888764 4589999999999999987644 5566
Q ss_pred hhHHHHHHHHHHHHhcCc
Q 010589 113 IPAIGMVMSVLAFVFGSP 130 (506)
Q Consensus 113 i~ai~~~~~li~f~~~~~ 130 (506)
++++..++..++|.+..|
T Consensus 379 v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 379 VFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 777766666666666544
No 239
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=91.11 E-value=2.2 Score=41.60 Aligned_cols=119 Identities=11% Similarity=0.091 Sum_probs=75.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
|..-..+|.++..+|+......- ++. ....+.|.+....++.+.|........+--..+--|+ .
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~--------~~~-------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAV--------SGR-------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------hCc-------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 55557889999999988776632 111 0123555555666677777777666666666677785 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWF 457 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~ 457 (506)
||.+.|+--...+++..+=..+...+. ++ +.+.|..+++....+..++...+.|.
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f----------~~------~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFF----------GD------DPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHc----------CC------ChHHHHHHHHHHHHHHHHHHhhheec
Confidence 999999988888888776544443332 21 23566777776666555555444443
No 240
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=91.04 E-value=2.1 Score=46.19 Aligned_cols=84 Identities=12% Similarity=0.185 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
+.++.+..=++.|++..-...++..++.+..+++.|+.++.+ ......+..++..+...... +|
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------~W--------- 233 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------DW--------- 233 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------hH---------
Confidence 677788888999999999999999999999999999999999 55544444554444444332 23
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 010589 432 RLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~~~ 453 (506)
..+++.....+++..+++++
T Consensus 234 --r~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 234 --RWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred --HHHHHHHHHHHHHHHHHHHc
Confidence 56677777777766665333
No 241
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=90.67 E-value=4 Score=43.29 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=67.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+...|+..++++..+-+++..+... .+. ......+..+...++.+++..+...+.+.++...-|+
T Consensus 73 ~~~~Ri~~~lv~~~~~~~~~~~l~~-------~~~-------~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~- 137 (437)
T TIGR00939 73 PVTVRLLGGLVILLVVVILVMVLVK-------VQT-------SETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST- 137 (437)
T ss_pred CccchhHHHHHHHHHHHHHHhheee-------ecC-------CcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH-
Confidence 5677899987766555544433210 000 0012344555666788999988888888888755443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
+++.+....+++..++..+.-+......+ +. ....+ --.||.+-+++.+++.+.|..+.
T Consensus 138 ----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~--~~----~~~~~-a~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 138 ----YSSAVMSGQGLAGVLTSLAMILVKASGND--SH----GLKKS-ALGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred ----HHHHHHhcchhHHHHHHHHHHHHHHhcCC--cc----chhhh-hhhHHHHHHHHHHHHHHHHHHHh
Confidence 44555566777777766554443321110 00 01111 13444444556666666666543
No 242
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=90.60 E-value=2.3 Score=45.01 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcc---cChhh
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQ---SPESM 386 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~---aP~~~ 386 (506)
-+.+|.++.+++.+.++.... . ..+........++.++|..+.....=+.+.+. -|++
T Consensus 61 Y~~i~~~~~~~~~~~~~~~~~---------~---------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~- 121 (433)
T PF03092_consen 61 YMIIGWLLGAVSALVLALLPA---------S---------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES- 121 (433)
T ss_pred HHHHHHHHHHHHHHHHHhccc---------c---------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-
Confidence 477787777766666655320 0 11222344445566666666666555555443 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+|..++..+....+|+.++..+++...
T Consensus 122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~ 148 (433)
T PF03092_consen 122 RGDLQSFVWGVRSVGSLVGSLLSGPLL 148 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999999999999999988886654
No 243
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=90.44 E-value=9.5 Score=39.17 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
+.+-+...-++.+.|-..+.+..=+++-+.-|++. +.+||+|..+..++..+++.+......
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~ 159 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQ 159 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHH
Confidence 34557788899999999999988899999999887 999999999999999999888766653
No 244
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=89.00 E-value=5.1 Score=41.69 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=74.5
Q ss_pred ceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 010589 265 FKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDD 344 (506)
Q Consensus 265 f~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~ 344 (506)
+...+++...+..+-++....+ .-..-++..|.+ +.+...+++++..+-.+..++.. ++
T Consensus 44 ~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drfG-------gR~~~~~s~~l~~IP~~~~~~a~--------~~----- 102 (417)
T COG2223 44 FGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRFG-------GRKWTILSMLLLLIPCLGLAFAV--------TY----- 102 (417)
T ss_pred cCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhcccC-------chHHHHHHHHHHHHHHHHHHHHc--------cC-----
Confidence 4456666666666555554332 333334555654 33446677777777777777643 11
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 345 PKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 345 ~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.|.|+++..-++.|++-.- ..+++..+.+.=||+.||.++|++. .--+|..+...+...+.
T Consensus 103 ------~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~ 163 (417)
T COG2223 103 ------PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA 163 (417)
T ss_pred ------CchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence 2335566666777777443 3457888888999999999999998 55555555544444443
No 245
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=88.17 E-value=0.39 Score=51.89 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i 113 (506)
.++.+..-.+++++..|.+-.+....+.|....+ +...+|++..+...+++++||-++|++.|..| |...|..
T Consensus 387 ~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 387 TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 4566666677778888888888877888888765 69999999999999999999999999999887 9999999
Q ss_pred hHHHHHHHHHHHHhcC
Q 010589 114 PAIGMVMSVLAFVFGS 129 (506)
Q Consensus 114 ~ai~~~~~li~f~~~~ 129 (506)
+++.++++....+...
T Consensus 461 ~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 461 CGLCFLLSAVLLLILR 476 (509)
T ss_pred cChHHHHHHHHHHHhH
Confidence 9999999887655543
No 246
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=87.95 E-value=1.2 Score=46.93 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=97.2
Q ss_pred eCccccchhhH---HHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010589 267 IPPASLSIFGI---LTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLD 343 (506)
Q Consensus 267 ip~~~~~~~n~---l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~ 343 (506)
.|+.....+|. +..++.+-++.+ +-.|++ +.+.++.-++++.+|-+..+. ..+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~----lgD~~G-------RK~vYG~~liImIi~t~~~~~----------s~~--- 136 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGW----LGDKFG-------RKKVYGKELIIMIICSALSGL----------SVG--- 136 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH----HHhhhc-------chhhhhHHHHHHHHHHHHhcc----------CCC---
Confidence 66666666655 445556666666 344443 222366667777766653332 122
Q ss_pred CCCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 010589 344 DPKAIIPISV-FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNW 422 (506)
Q Consensus 344 ~~~~~~~~s~-~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w 422 (506)
...+.+. +|+..-=+++|+|-.-=.|.+-+.....|-++.||..+++.+..++.|-..|+.+..++...-.
T Consensus 137 ---~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe----- 208 (538)
T KOG0252|consen 137 ---TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE----- 208 (538)
T ss_pred ---CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh-----
Confidence 1123344 6788888999999998899998888899999999999999999999998888776655443211
Q ss_pred CCCCCCccc----chhHHHHHHHHHHHHHHHHH
Q 010589 423 LPDRNLNRG----RLEHYYWLVSGIQVINLVYY 451 (506)
Q Consensus 423 ~~~~~ln~~----~~~~~~~~la~l~~l~~~i~ 451 (506)
. .+|+. +++..|-+.-+++++=.+..
T Consensus 209 --~-~~~~~~~~~~ld~vWRl~~glg~vpa~~~ 238 (538)
T KOG0252|consen 209 --K-IFNGPSTYPHLDGVWRIIFGLGAVPALLV 238 (538)
T ss_pred --c-cCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 1 23332 67888876666555544433
No 247
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.60 E-value=34 Score=34.63 Aligned_cols=97 Identities=10% Similarity=0.231 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cC----CCCCcCC
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKY---TG----SKNNWLP 424 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~---~~----~~~~w~~ 424 (506)
||-.+.+. +.+++.....+++-+-|..+.=|.-.++ ||...+++..+=.++ .+++-. ++ .+++.+|
T Consensus 112 S~afl~L~-F~LAivdc~SnVtFLPFMs~lpp~fL~a-----fFvG~GLSaLlPsll-aLaQGtg~~~C~~n~t~~r~fP 184 (439)
T KOG4255|consen 112 SWAFLSLL-FGLAIVDCTSNVTFLPFMSQLPPAFLNA-----FFVGMGLSALLPSLL-ALAQGTGRLECDLNGTPGRPFP 184 (439)
T ss_pred hHHHHHHH-HHHHHHHhhccchhhhhhhhCChHHHHH-----HHHhccHHHHHHHHH-HHHccCCceeecCCCCCCCCCC
Confidence 44334443 6678888888999999988777765554 444445544443322 233211 11 1122233
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 425 DRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYT 459 (506)
Q Consensus 425 ~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~ 459 (506)
. +. .-..|||++..+++.++..|..+-|.-+
T Consensus 185 ~-rF---s~s~FFl~l~~~~~~alaAF~vL~r~~~ 215 (439)
T KOG4255|consen 185 P-RF---SVSTFFLALFAFTCAALAAFFVLYRLGA 215 (439)
T ss_pred C-Cc---cHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3 11 1268899999999988888877765433
No 248
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=86.75 E-value=0.17 Score=55.12 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=2.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc----------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN---------- 104 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~---------- 104 (506)
-...+++|-++.++|...+-+.-.+++=|-.+++ +-.-+++++|.+-.+|-.+|.++++..-+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~------~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK------NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccc------cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 4567778889999999888888888777766654 467788999999999999998888765431
Q ss_pred -----------c-ccchhhhhhHHHHHHHHHHHHhcCccee
Q 010589 105 -----------V-GWGLGFGIPAIGMVMSVLAFVFGSPLYV 133 (506)
Q Consensus 105 -----------~-g~~~~F~i~ai~~~~~li~f~~~~~~~~ 133 (506)
+ .||++|.++++..++..+.++++-|++.
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 2 4999999999988887776666655543
No 249
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=86.53 E-value=1.1 Score=47.44 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCh--hhH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPE--SMR 387 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~--~~~ 387 (506)
-+..|.+++++|.++++..+ ..+...+..+.+++++|-.+.-|-..++..++=|+ ..|
T Consensus 94 tI~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr 153 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR 153 (498)
T ss_pred HHHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence 48899999999999888731 01234577778888899999999888888877554 236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 388 STAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 388 g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
-...+++++...+|+.+++.+...+.. |.+ +..-|.+.++-+.+++++|++..|+++.
T Consensus 154 D~gFt~fY~~iNiGsl~~p~i~~~~~~-------~~g--------~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 154 DGGFTLFYMGINIGSLIAPIITGLLAI-------NYG--------WHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred CCCccEEEEEeehHHHHHHHHHHHHHH-------hhC--------HHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 677788888889999999999888763 222 2444666666777777777777665543
No 250
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=85.92 E-value=1.1 Score=44.42 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc---cchhhh
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG---WGLGFG 112 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g---~~~~F~ 112 (506)
.+.-|++..++++...+.....-++++...+++ +.+.+|..-|...|+|-.+.|+++|++.++-| |--+|.
T Consensus 352 ~lsPy~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ff 425 (459)
T KOG4686|consen 352 FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFF 425 (459)
T ss_pred hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHH
Confidence 344466777777777776666777888888876 69999999999999999999999999998755 444666
Q ss_pred hhHHHHHHHHH
Q 010589 113 IPAIGMVMSVL 123 (506)
Q Consensus 113 i~ai~~~~~li 123 (506)
+....|.+...
T Consensus 426 l~~~~~aL~sv 436 (459)
T KOG4686|consen 426 LIIGLMALTSV 436 (459)
T ss_pred HHHHHHHHHHH
Confidence 66666655333
No 251
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=85.32 E-value=39 Score=35.48 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+++-..-++.|++-.. -..-+++++..+|++.--.+.+.--.+.-+|..+|++++++.-
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666777776444 4556799999999988888888777888888888888887665
No 252
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=84.95 E-value=37 Score=36.28 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHH
Q 010589 366 AEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQV 445 (506)
Q Consensus 366 gEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~ 445 (506)
+-..+...+++++++.+.++.|....|+-..+.+.+..+++.+++...+ +.+ +...+++-++..+
T Consensus 125 ~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~-------~~~--------~a~~f~ia~~~~~ 189 (463)
T KOG2816|consen 125 GFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK-------FLG--------IALVFLIAAASGI 189 (463)
T ss_pred chhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------hcC--------chHHHHHHHHHHH
Confidence 3445566788889999999999999999999888888888888876653 222 2455555556666
Q ss_pred HHHHHHHHhhh
Q 010589 446 INLVYYVICAW 456 (506)
Q Consensus 446 l~~~i~~~~~~ 456 (506)
++.+...+..|
T Consensus 190 ~~~~y~~~~l~ 200 (463)
T KOG2816|consen 190 LSLLYMLLFLP 200 (463)
T ss_pred HHHHHHhhccc
Confidence 55555555544
No 253
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=84.38 E-value=60 Score=34.40 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++...++...++-=+|=-..-.......-+..|++.||...|+=.....+-..+...++-+..
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455555555555556666666666667777899999999999999998888888877765544
No 254
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=83.09 E-value=21 Score=38.15 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH---HHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST---AVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~---~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+...++.+++.....+..-.+..+..+ +.++. .+...+.+..+|..+|..++....
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~ 182 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL 182 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778888888888888888888877 33333 455555556678888877776655
No 255
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=82.43 E-value=67 Score=33.53 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGN-YIGTLVVTLVH 413 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~-~l~~~l~~~~~ 413 (506)
..+.+|.+.+.----....++.|-++.||+...|.+|.+-.--.-+|. .-+.+...+++
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 445678888888888888999999999999999999998765544444 44444444443
No 256
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=81.61 E-value=58 Score=33.39 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHH-HHHHHHHHHHhhHhhhhcccccc--chh
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYY-FCMGIATLTALTVVVYIQDNVGW--GLG 110 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy-~~iNiG~~i~~~~~~~l~~~~g~--~~~ 110 (506)
.+++.+++|.++-++++.+..+.-.+....++.+++-+ ++-+..-|+.-- +.+.+-++.+.+++-++.+..+. ...
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaP 197 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAP 197 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcch
Confidence 46889999999999999999999888877666554421 123445454433 22333445555555566666655 678
Q ss_pred hhhhHHHHHHHHHHHHhcC
Q 010589 111 FGIPAIGMVMSVLAFVFGS 129 (506)
Q Consensus 111 F~i~ai~~~~~li~f~~~~ 129 (506)
|.++.+..+++.++.....
T Consensus 198 F~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 198 FDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 8888888877776654433
No 257
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=80.84 E-value=6.5 Score=41.52 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccc---cchhhHHHHHHHHHHHHHHHHHHhhhhcC
Q 010589 224 KSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPAS---LSIFGILTMLIGLALYERIFVPIARRFTG 300 (506)
Q Consensus 224 k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~---~~~~n~l~iiil~pl~~~~~~pl~~r~~~ 300 (506)
++++++..+.+..-+.|+...+..|-+. | .+| +|-.| .....|+.-++..|++....+.+-.|.++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl-~------~lG----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYL-Q------SLG----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHH-H------HcC----CCcccccccccccccccceeccccccccccccccccc
Confidence 3444444445556667776555444333 2 122 44333 34557888888899988876666666654
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010589 301 NPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKA-IIPISVFWLVPQYCLHGVAEVFMSVGHLEFLY 379 (506)
Q Consensus 301 ~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~ 379 (506)
|+ .-|..|.+..+++++..+...-. +.. +.|++.. .-+..+...++.+.++-++--+..-..=++..
T Consensus 101 RR------PfI~~~s~~i~~~l~Lig~aaDi----g~~--lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~ 168 (498)
T KOG0637|consen 101 RR------PFILAGSLLIAVSLFLIGYAADI----GLL--LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLA 168 (498)
T ss_pred cc------chHHHhhHHHHHHHhhhhhHhhh----hHH--hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHH
Confidence 33 24778888888888776654311 111 1233222 22455555677777887777555556678888
Q ss_pred ccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 380 DQS-PESMRSTAVALYWIAISMGNYIGTLVVT 410 (506)
Q Consensus 380 ~~a-P~~~~g~~~g~~~l~~aig~~l~~~l~~ 410 (506)
+++ |+..+-++++.+-+..++||.+|-.++.
T Consensus 169 Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 169 DLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 885 4444444999999999999999877765
No 258
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=79.53 E-value=21 Score=37.55 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHH
Q 010589 270 ASLSIFGILTMLIGLALYERIFV 292 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~ 292 (506)
+...+++++.-++..|++..+-+
T Consensus 46 G~i~s~~~~~~l~~qp~~G~i~D 68 (412)
T PF01306_consen 46 GIIFSAGSLFALLAQPVYGFISD 68 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhcc
Confidence 57788999999999999887543
No 259
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=78.33 E-value=91 Score=32.56 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+...+.+-.+++++|.|+ -|-..++-++..+.... -.-.... ++|+ +|..++..+.=.+..+.||+|.....
T Consensus 165 nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r----~~~~V~~-~~wa--ig~v~ea~law~vm~~~gwr~~l~~~ 236 (528)
T KOG0253|consen 165 NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHR----WLLTVMS-FFWA--IGQVFEALLAWGVMSNFGWRYLLFTS 236 (528)
T ss_pred CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCC----CcchhHH-HHHH--HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344455556788999999 77777777766664421 1222222 5554 57777776665666788999854443
Q ss_pred H-HHHHHHHHHHH
Q 010589 115 A-IGMVMSVLAFV 126 (506)
Q Consensus 115 a-i~~~~~li~f~ 126 (506)
. -.|+.+...++
T Consensus 237 ~~pl~~~a~f~~w 249 (528)
T KOG0253|consen 237 STPLMFAARFLVW 249 (528)
T ss_pred HhHHHHHHHHHhh
Confidence 3 34444444443
No 260
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=76.95 E-value=45 Score=31.30 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=61.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
.-.|.+.+.+..++..+..++..+|+ .+..++..+++...++....+.............+ + ......
T Consensus 105 lG~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~--~---~~~~~~ 172 (205)
T PF01891_consen 105 LGANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG--D---YPWMAL 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--c---ccHHHH
Confidence 34677777777777777766655553 23445666666666666555543322221111111 0 001223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccCh
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPE 384 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~ 384 (506)
+....+.+.++++.|.+++-...++..+.-|+
T Consensus 173 ~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 173 VQAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33466888999999999999999999988885
No 261
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=73.44 E-value=94 Score=32.53 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccch
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRL 433 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~ 433 (506)
+..+...++.+++.....-..+..+...-|+-.++++.| .++++.+.+++.-+.....+ |.+. .-
T Consensus 118 ~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G-----~a~aG~l~Sl~~i~tka~~~---------~~~~-sA 182 (406)
T KOG1479|consen 118 LVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG-----QALAGTLTSLLRILTKAAFS---------DSRT-SA 182 (406)
T ss_pred HHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc-----chhHhHHHHHHHHHHHHhcC---------CCCc-ee
Confidence 345567788888888888888888876666666665554 55555555555444443321 1221 22
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 010589 434 EHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 434 ~~~~~~la~l~~l~~~i~~~ 453 (506)
..||.+-.++.+++.+.|..
T Consensus 183 ~~yF~~s~~~~llC~i~y~~ 202 (406)
T KOG1479|consen 183 LIYFITSTVILLLCFVLYLV 202 (406)
T ss_pred ehhHHHHHHHHHHHHHHHHH
Confidence 56677677788888888884
No 262
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=71.26 E-value=32 Score=36.92 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 358 PQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 358 ~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.-+++.+--++.+--=+++... ++..|.+..+.-....+|.++|..+--..
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls----~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLS----PENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HHHHHHccCCceeehhhhhhcC----hhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 4445555555555555555554 55567777777777777777766544333
No 263
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=71.13 E-value=1.5e+02 Score=31.75 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHH----HHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 361 CLHGVAEVFMSVGH----LEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 361 ~l~~igEl~~sp~g----l~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++.-.+|++.+.+- .+++.+....+.-.+.-+++.+...+|..+|+.+.....
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666655544 478888888999999999999999999999998876655
No 264
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=69.31 E-value=45 Score=34.74 Aligned_cols=154 Identities=14% Similarity=0.228 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHH
Q 010589 279 TMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVP 358 (506)
Q Consensus 279 ~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~ 358 (506)
.=++-.|++|.+. .||. |+.+.--.+....+|+++..+|+.+--.+ ..+| ....+..--||+.+
T Consensus 79 LKllWaPiVDs~y---~k~~-GrrksWvvp~q~llG~~mllLs~~v~~~~--------g~ng----~~p~v~~lt~~f~L 142 (510)
T KOG3574|consen 79 LKLLWAPIVDSVY---SKRF-GRRKSWVVPCQYLLGLFMLLLSYLVDRGL--------GGNG----GLPNVVALTLLFLL 142 (510)
T ss_pred HHHHHHhhhHHHH---HHhh-ccccceeeehHHHHHHHHHHHhhCCCccc--------ccCC----CCcchHHHHHHHHH
Confidence 4466788888752 2333 33222223445556666555544321110 0111 00011111234444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCCCCcCCCCCCccc--chhH
Q 010589 359 QYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT-GSKNNWLPDRNLNRG--RLEH 435 (506)
Q Consensus 359 ~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~-~~~~~w~~~~~ln~~--~~~~ 435 (506)
--++-+.-++.+---++++.. |+ .-|-+..+.-...-.|.++|..+.-....++ +| +++-+-.++++ .+..
T Consensus 143 LnflaAtQDIAVDgwALtmLs---~e-~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N--~y~rs~P~~~g~ItL~g 216 (510)
T KOG3574|consen 143 LNFLAATQDIAVDGWALTMLS---RE-NLGYASTCQSVGQTAGYFLGNVVFLALESPDFCN--TYLRSIPLDQGFITLAG 216 (510)
T ss_pred HHHHHhhhhhhhhHHHHHhcC---Hh-hcCchhHHHHHHHhhhHHhhcceeeEecChhhhh--HHHhcCcCccceEEhhH
Confidence 444444455555444444433 33 3355555555556666666543332222110 00 11111122333 3566
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 010589 436 YYWLVSGIQVINLVYYVIC 454 (506)
Q Consensus 436 ~~~~la~l~~l~~~i~~~~ 454 (506)
|+|.-+.+.+++..+-.++
T Consensus 217 y~~fwg~~~~vat~Lv~~~ 235 (510)
T KOG3574|consen 217 YLWFWGALFIVATTLVALL 235 (510)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7776677666666555443
No 265
>PF15050 SCIMP: SCIMP protein
Probab=68.94 E-value=3.6 Score=34.62 Aligned_cols=35 Identities=17% Similarity=0.539 Sum_probs=19.0
Q ss_pred hHHHHHHHHHH-----HHHHHHHHHhhhccccccCccccc
Q 010589 434 EHYYWLVSGIQ-----VINLVYYVICAWFYTYKPLEEVCE 468 (506)
Q Consensus 434 ~~~~~~la~l~-----~l~~~i~~~~~~~y~~~~~~~~~~ 468 (506)
++||.++|+.. .+++++|.++...++.+++-+.++
T Consensus 6 ~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiak 45 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAK 45 (133)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceecc
Confidence 57777776532 233455655555555555545544
No 266
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=67.30 E-value=1.9e+02 Score=31.27 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHH----HHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 361 CLHGVAEVFMSVGH----LEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 361 ~l~~igEl~~sp~g----l~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
++.-.+|+..+.+. -.++.+..+.+.-.+.-+++.+...+|..+|+.+......
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888876643 4678888889999999999999999999999988877765
No 267
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=64.79 E-value=16 Score=34.45 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHH-HHHHHHHHHhhHhhhhccc--cccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYF-CMGIATLTALTVVVYIQDN--VGWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~-~iNiG~~i~~~~~~~l~~~--~g~~~~F 111 (506)
..+.+.+...+.+++.|...|...+++.+.+++ . ++|...++++.. ...+|..+++.+.+.+... .+|+..|
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 355666666668888888999999999999886 1 258888888888 6888999998777776553 5788866
Q ss_pred hhhHHHH
Q 010589 112 GIPAIGM 118 (506)
Q Consensus 112 ~i~ai~~ 118 (506)
.+.....
T Consensus 168 ~~~~~~~ 174 (338)
T COG0477 168 LLAALLG 174 (338)
T ss_pred HHHHHHH
Confidence 6554433
No 268
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=62.78 E-value=2e+02 Score=30.11 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++|.++.-.+.-|+-.....+-....+.+..|++.|-+.||+-.++-++|..+++.++-.++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45545555666777777777878888889999999999999999999999999998887665
No 269
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=62.02 E-value=1.7e+02 Score=29.10 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHH
Q 010589 357 VPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAI 398 (506)
Q Consensus 357 i~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~ 398 (506)
...+++.-..-.+..|..+-+-.+.-|+.-|+..|-.|-.-.
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPL 389 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPL 389 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechh
Confidence 567788777778888988888899999999999998765543
No 270
>PF14007 YtpI: YtpI-like protein
Probab=57.42 E-value=22 Score=28.75 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhcCcceeecCC
Q 010589 84 YFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKP 137 (506)
Q Consensus 84 y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p 137 (506)
-+.+.+|.++.....-.+.- .+=.+.+.++++.+++++...+.|.|.|+|..|
T Consensus 34 ka~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 34 KANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 45667777776543322222 344578889999999999999999888777655
No 271
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=57.18 E-value=1.4e+02 Score=28.41 Aligned_cols=101 Identities=14% Similarity=0.049 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
.-.|.+.+.+..++..+.++++.+|.. .+ ....-+..|.+-..++.+..++ |. +-..+ .+......+
T Consensus 108 LG~N~l~m~~~~~~~~~~~~~~~~~~~-l~---~~v~~f~~gf~~~~l~~~~~~~-~l-----~l~~~---~~~~~~~~~ 174 (214)
T TIGR00123 108 LGANGFSMGVIGPFVGWIVYKLACRAG-LR---RDVAVFLAAMLGDLATYVVTSV-QL-----ALAFP---IPHAGFTGS 174 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cc---hHHHHHHHHHHHHHHHHHHHHH-HH-----HHhCC---CcccchHHH
Confidence 346888888888888888888777642 11 1122222233333333333222 11 11111 000000011
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh
Q 010589 353 ----VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 353 ----~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
.....+..+.+++.|..+......+..+..|+-.
T Consensus 175 ~~~~~~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 175 VVKFMGIFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 2234455678899999999999999999998854
No 272
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=56.86 E-value=2.7e+02 Score=29.56 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=22.2
Q ss_pred eCccccchhhHHHHHHHHHHHHHHHH
Q 010589 267 IPPASLSIFGILTMLIGLALYERIFV 292 (506)
Q Consensus 267 ip~~~~~~~n~l~iiil~pl~~~~~~ 292 (506)
.|++.+.....+..++++|.+.+.++
T Consensus 38 l~~siygl~~~~~~~~f~~~vG~~iD 63 (432)
T PF06963_consen 38 LPVSIYGLVRSLSAILFGPWVGRWID 63 (432)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 46788889999999999999998654
No 273
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=54.19 E-value=1.8e+02 Score=30.78 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010589 313 VGFAINILATIVSSFVEIK 331 (506)
Q Consensus 313 iG~il~~l~~~~~~~~~~~ 331 (506)
.|+++.++.|+...+.|..
T Consensus 300 YgiLFI~LTF~~fflfE~~ 318 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELL 318 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788888999988898864
No 274
>PRK08319 cobalt transport protein CbiM; Validated
Probab=54.08 E-value=1.4e+02 Score=28.62 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcccChhhHH
Q 010589 357 VPQYCLHGVAEVFMSVGHLEFLYDQSPESMRS 388 (506)
Q Consensus 357 i~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g 388 (506)
.++++.++++|.+++-...++..+.-|+-.+.
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~t 214 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLVK 214 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHhh
Confidence 45667799999999999999999999987653
No 275
>PRK11715 inner membrane protein; Provisional
Probab=53.08 E-value=1.9e+02 Score=30.59 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010589 313 VGFAINILATIVSSFVEIK 331 (506)
Q Consensus 313 iG~il~~l~~~~~~~~~~~ 331 (506)
.|+++.++.|+...+.|..
T Consensus 306 YgiLFI~LTF~~fFlfE~~ 324 (436)
T PRK11715 306 YAILFIALTFAAFFLFELL 324 (436)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4888899999999998853
No 276
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=51.20 E-value=9.5 Score=41.18 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
++|..+..=++-++..|++-.++.+.+.+.-+++-. +.-+..+.--+- -+|--+|.+++|.+.+.+|=+..|.++
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~---at~Q~l~~g~f~--GlG~g~GslIGG~~v~~fg~~ttf~~~ 532 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLR---ATAQGLLQGIFH--GLGKGLGSLIGGFVVERFGARTTFRIF 532 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcch---HHHHHHHHHHhc--ccCcchhhhhhhhhheeehhHHHHHHH
Confidence 455555555677888888889999999999988741 123333333222 345556666778888888889999999
Q ss_pred HHHHHHHHHHHHhcCcce
Q 010589 115 AIGMVMSVLAFVFGSPLY 132 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~ 132 (506)
+++.++.++.+.+.++..
T Consensus 533 giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 533 GIACLVTLALFISIQLLL 550 (618)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 998888888877765543
No 277
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=50.37 E-value=1.8e+02 Score=29.51 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH---h--hhcCCCCCCC-C
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKV---A--ANHHLLDDPK-A 347 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~---~--~~~g~~~~~~-~ 347 (506)
-.|.+.+-+..++..+.+++..+|+. + +....+..+++-..++....++....-+-. . ...|. +. .
T Consensus 107 GaN~l~ma~~~~~v~y~iyr~~~~~~---~--~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~---~~~~ 178 (322)
T PRK07331 107 GANCFNMAFIMPFVGYYIYKFIKKWT---K--SKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGL---PLYS 178 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCc---cccc
Confidence 35766666666777777777666532 1 222333444444555554444322110000 0 00110 00 0
Q ss_pred Cccc--hHHHHHHHHHHH-HHHHHHHHHHHHHHhHcccChhhH
Q 010589 348 IIPI--SVFWLVPQYCLH-GVAEVFMSVGHLEFLYDQSPESMR 387 (506)
Q Consensus 348 ~~~~--s~~wli~~~~l~-~igEl~~sp~gl~~~~~~aP~~~~ 387 (506)
..+. ...-+.+..+.+ ++.|..+....+.|+.+..|+-..
T Consensus 179 ~~~~~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll~ 221 (322)
T PRK07331 179 PYPLSVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGILY 221 (322)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhc
Confidence 0011 222355566665 999999999999999999998763
No 278
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=50.06 E-value=2.2e+02 Score=26.49 Aligned_cols=62 Identities=24% Similarity=0.221 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPE-SMRSTAVALYWI-AISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~-~~~g~~~g~~~l-~~aig~~l~~~l~~~~~ 413 (506)
+.++++....+.+++.....|....++.+..|+ ..++...+.... ...+|..+++.+.....
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666778999999999999999999998 678888888887 57777777775554443
No 279
>PRK06265 cobalt transport protein CbiM; Validated
Probab=49.30 E-value=2.3e+02 Score=26.50 Aligned_cols=96 Identities=19% Similarity=0.109 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
-.|.+...+-.++...+.++..||. +..+...|++-..++....++......-. .| ..+...
T Consensus 101 G~N~l~m~~p~~~~~~~~~~~~~~~--------~~~~~~~~f~~~~l~v~~~~l~~~~~l~l---~~-------~~~~~~ 162 (199)
T PRK06265 101 GVNTLNMALPAVLAGYLFRKLLRRT--------PPPRGLAAFLAGALAVFLAALLCALELAL---SG-------GFPFVP 162 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHH---cc-------cccHHH
Confidence 3466555544555555444444431 22455667776776666555432111111 11 001122
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhHcccChhhH
Q 010589 354 FW--LVPQYCLHGVAEVFMSVGHLEFLYDQSPESMR 387 (506)
Q Consensus 354 ~w--li~~~~l~~igEl~~sp~gl~~~~~~aP~~~~ 387 (506)
.+ +.+.++.+++.|.+++....++..+.-|+-.+
T Consensus 163 ~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~~l~ 198 (199)
T PRK06265 163 AAKLLGLAHLPLMVIEGIITAFAVSFLARVRPELLK 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcc
Confidence 22 22455667777999999999999999887543
No 280
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=48.21 E-value=31 Score=30.99 Aligned_cols=58 Identities=7% Similarity=-0.008 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVV 98 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~ 98 (506)
+.+.++.+=++.++|.+.+-+.....+.+.-++ ++|++..++|+-..+.+.++|.++.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~------~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTE------ETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH------HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 466788888899999999999888887754433 2578888888888888888776553
No 281
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=45.59 E-value=6.9 Score=39.30 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHH
Q 010589 361 CLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLV 440 (506)
Q Consensus 361 ~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~l 440 (506)
++.+++-.+.....+.++...-|+..++++. ..+++..+..++.- +.. +..+ +.+.+ ...||.+-
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~a~~~-----Gq~~aGv~~s~l~i-i~~-------~~~~-~~~~~-a~~yF~~a 69 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQAVMI-----GQGLAGVIVSLLRI-ITK-------ASGS-DVKTS-AFIYFIIA 69 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHHHHHh-----hccHHHHHHHHHHH-HHH-------Hhhh-ccchh-hhhHHHHH
Confidence 4556666777777788887655544444433 35555555433332 221 1111 22222 23444444
Q ss_pred HHHHHHHHHHHHHhhh
Q 010589 441 SGIQVINLVYYVICAW 456 (506)
Q Consensus 441 a~l~~l~~~i~~~~~~ 456 (506)
..+.+++.+.|..+.|
T Consensus 70 ~~i~i~~~~~~~~l~~ 85 (309)
T PF01733_consen 70 VLIVILCIILYFILPR 85 (309)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4566666666665544
No 282
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=45.15 E-value=43 Score=26.15 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHH
Q 010589 79 FFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFV 126 (506)
Q Consensus 79 ~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~ 126 (506)
+-.++...+-+++++|. +.||+.++ ++..+.+-+++.++++++.+
T Consensus 9 ae~l~~~il~~~~iisf-i~Gy~~q~--~~~~~~~~~~g~~~~~lv~v 53 (76)
T PF06645_consen 9 AEKLMQYILIISAIISF-IVGYITQS--FSYTFYIYGAGVVLTLLVVV 53 (76)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhhee
Confidence 34566677888888885 56787764 56777777777777666643
No 283
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=44.79 E-value=61 Score=34.07 Aligned_cols=106 Identities=18% Similarity=0.091 Sum_probs=72.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 010589 272 LSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPI 351 (506)
Q Consensus 272 ~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 351 (506)
..++..+.+-++.|++..+ ....+ ++.+.+.+...+..++.+.+..+. . ..
T Consensus 63 ~~aia~llia~LapiLG~i----aD~~g------~Rk~~~~~f~~i~i~~~~~L~~i~---------~----------~s 113 (438)
T COG2270 63 ASAIAGLLIALLAPILGTI----ADYPG------PRKKFFGFFTAIGIISTFLLWFIP---------P----------GS 113 (438)
T ss_pred HHHHHHHHHHHHHHHhhhh----hccCC------CcchHHHHHHHHHHHHHHHHHHhC---------C----------Cc
Confidence 3466778888899998874 33221 234445555555555555555431 1 13
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHH
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGT 406 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~ 406 (506)
++|+.+..|++.+++--+..+...++..+.++++..++..+.=+-.--+|+.+--
T Consensus 114 ~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~l 168 (438)
T COG2270 114 YLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILL 168 (438)
T ss_pred hHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHH
Confidence 5667788999999999999999999999999998888887765555555554433
No 284
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=44.28 E-value=50 Score=32.73 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=59.8
Q ss_pred CCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc----ccc
Q 010589 31 ASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD----NVG 106 (506)
Q Consensus 31 ~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~----~~g 106 (506)
|...++...+++..++-...|.+-|.+.-| -.||-+++ .|...++||..-.|+=.-++. |.-+ ..+
T Consensus 339 P~kes~~~s~i~F~~~E~cvGlfwPSimkm-RsqyIPEe-----arstimNfFRvPLnifvClvL----ynlh~~~~p~~ 408 (454)
T KOG4332|consen 339 PSKESPSESLIGFCLFEACVGLFWPSIMKM-RSQYIPEE-----ARSTIMNFFRVPLNIFVCLVL----YNLHVDAFPTT 408 (454)
T ss_pred CCcCCchHHHHHHHHHHHHHhhcchHHHHH-HHhhCCHH-----HHhhhhhheechhhHhhhhhh----eecccccCccc
Confidence 334456667889999999999999998766 45666553 599999999988776433221 2111 235
Q ss_pred cchhhhhhHHHHHHHHHH
Q 010589 107 WGLGFGIPAIGMVMSVLA 124 (506)
Q Consensus 107 ~~~~F~i~ai~~~~~li~ 124 (506)
-+..|.+|.+.+.++.+.
T Consensus 409 tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 409 TRNMFGICSAFLFVASIL 426 (454)
T ss_pred cchhhhhhHHHHHHHHHH
Confidence 567899999999988664
No 285
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=43.66 E-value=4.4e+02 Score=28.27 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 010589 358 PQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAIS-MGNYIGTLVVT 410 (506)
Q Consensus 358 ~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~a-ig~~l~~~l~~ 410 (506)
.+.++.-.++--..-..-|.++...+++.|...-++.=.... +|-..|+.+.+
T Consensus 381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~ 434 (472)
T TIGR00769 381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQ 434 (472)
T ss_pred HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHH
Confidence 466777788888888889999999999998888877655433 55555555443
No 286
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=42.52 E-value=41 Score=30.46 Aligned_cols=26 Identities=15% Similarity=0.501 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 435 HYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
.-++++.+++.+.+++|++=..|.++
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33456666666666555543333333
No 287
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=42.11 E-value=1.6e+02 Score=25.90 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 010589 351 ISVFWLVPQYCLHGVAEVFMS 371 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~s 371 (506)
.++.|++.. +++-+.|++..
T Consensus 4 ~~~~wli~g-~~ll~~E~l~~ 23 (140)
T COG1585 4 GAWIWLILG-LLLLIAEILGP 23 (140)
T ss_pred hhHHHHHHH-HHHHHHHHhcc
Confidence 356677776 55556666543
No 288
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=40.10 E-value=3.5e+02 Score=26.00 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhHcccChhh
Q 010589 353 VFWLVPQYCLH-GVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 353 ~~wli~~~~l~-~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
.--+.+..+.+ +++|..+.....+++.+..|+.+
T Consensus 183 ~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~ 217 (230)
T PRK11909 183 IPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENL 217 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 33466667777 99999999999999998866654
No 289
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=39.23 E-value=67 Score=34.66 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=49.8
Q ss_pred cCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhh-hHHHHHHHHHH
Q 010589 50 SGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGI-PAIGMVMSVLA 124 (506)
Q Consensus 50 ~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i-~ai~~~~~li~ 124 (506)
.-+++..--..+.++|++.+ +..++++-+....++-+++-.++++.+.++.||..+-.+ |.+.++.++..
T Consensus 296 inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~~F 366 (491)
T PF03219_consen 296 INLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGLLF 366 (491)
T ss_pred HHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH
Confidence 33444444455667776553 689999999999999888888889999999999975554 55544444433
No 290
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=38.73 E-value=4.2e+02 Score=27.01 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhHh------hhhccccccchhhh
Q 010589 86 CMGIATLTALTVV------VYIQDNVGWGLGFG 112 (506)
Q Consensus 86 ~iNiG~~i~~~~~------~~l~~~~g~~~~F~ 112 (506)
.+-+|-.++..++ .++.++ |...-+.
T Consensus 14 ~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~ 45 (334)
T PF06027_consen 14 VLLLGQVLSLCITGTGTFSSLLANK-GVNIPTF 45 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHH
Confidence 4444555544332 345554 5554433
No 291
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=34.77 E-value=83 Score=23.20 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhccccccCcccccCCccc
Q 010589 445 VINLVYYVICAWFYTYKPLEEVCEDDKDE 473 (506)
Q Consensus 445 ~l~~~i~~~~~~~y~~~~~~~~~~~~~~~ 473 (506)
+++++.++--++-|..++.....|++.++
T Consensus 12 C~aLva~vQ~APQYa~GeeP~YDEdd~dd 40 (65)
T PF10731_consen 12 CVALVAIVQSAPQYAPGEEPSYDEDDDDD 40 (65)
T ss_pred HHHHHHHHhcCcccCCCCCCCcCcccCcc
Confidence 34555566678888877777665444333
No 292
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=34.04 E-value=6.3e+02 Score=27.29 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHH----HHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 361 CLHGVAEVFMSVGHL----EFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 361 ~l~~igEl~~sp~gl----~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++.-.+|+..+.+-. .|+.+..-.+.-.+..+++.+...++..+++.+.....
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778887776554 66777777888899999999999999999887776554
No 293
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.89 E-value=3.5e+02 Score=28.95 Aligned_cols=65 Identities=14% Similarity=0.355 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT 416 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~ 416 (506)
+-+.....-+++|+|-.+.....=++.++.++++-+....++.+.....+..+|+.....+...+
T Consensus 101 N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~ 165 (461)
T KOG3098|consen 101 NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFS 165 (461)
T ss_pred chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEec
Confidence 45667777899999999999999999999999999999999999999999999887766655443
No 294
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=33.58 E-value=3.5e+02 Score=24.10 Aligned_cols=75 Identities=9% Similarity=0.055 Sum_probs=42.4
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+.++++.+.++++..|++.+-+-- ...++ ..=+.|.-.-.+-++++-+..-.-..++--+.+---
T Consensus 2 ~~l~~i~iS~ifa~~G~~~llf~l------~~g~~---------dwil~wvgvlmaylSL~~li~Ly~~~ty~k~~~k~l 66 (161)
T PF13042_consen 2 SVLKNIMISFIFAVGGMIWLLFNL------FMGGG---------DWILSWVGVLMAYLSLYILIDLYCKNTYDKKFSKVL 66 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------hcCCC---------cchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 567889999999999988765521 12222 233445555556666666655554444433333223
Q ss_pred hHHHHHHHHH
Q 010589 386 MRSTAVALYW 395 (506)
Q Consensus 386 ~~g~~~g~~~ 395 (506)
.|+...++.+
T Consensus 67 ~kt~~iSF~~ 76 (161)
T PF13042_consen 67 IKTNVISFNF 76 (161)
T ss_pred HHHHHHHHHH
Confidence 3555555433
No 295
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.33 E-value=72 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=9.6
Q ss_pred HHhhhccccccCccc
Q 010589 452 VICAWFYTYKPLEEV 466 (506)
Q Consensus 452 ~~~~~~y~~~~~~~~ 466 (506)
+-..|.|.||..-+.
T Consensus 21 ~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 21 CTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHhhccccccccCC
Confidence 345788888765444
No 296
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.28 E-value=2e+02 Score=23.44 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 010589 393 LYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 393 ~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+-+..-++.++|.+.+....
T Consensus 27 ~~q~ilti~aiVg~i~Gf~~Q 47 (101)
T KOG4112|consen 27 FQQLILTIGAIVGFIYGFAQQ 47 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665554
No 297
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=32.02 E-value=2.9e+02 Score=26.97 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVV 409 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~ 409 (506)
|-++.-++++.|-++..| -+|..-+|+-.+.|+..|.+.+...
T Consensus 57 ~amlgG~lW~~gN~~~vp------------ii~~iGLglg~liW~s~n~l~Gw~~ 99 (254)
T PF07857_consen 57 WAMLGGALWATGNILVVP------------IIKTIGLGLGMLIWGSVNCLTGWAS 99 (254)
T ss_pred HHHhhhhhhhcCceeehh------------HhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344454666665555444 4556666666666666666655444
No 298
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=31.42 E-value=4.9e+02 Score=25.24 Aligned_cols=83 Identities=7% Similarity=0.021 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
..|.+.+-..+.+.|.+.+.+.......+.|+++ |+.+-++---..-+++.+=..+..-+.++-.-...+.++
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la 167 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLA 167 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4565555555555665555444444445777643 666666655555555555444433333332233333444
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
....+++++.
T Consensus 168 ~~~~~v~l~~ 177 (250)
T PF06813_consen 168 VLPAVVCLVA 177 (250)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 299
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=30.38 E-value=1e+03 Score=28.61 Aligned_cols=75 Identities=13% Similarity=-0.034 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----HhccCCCCcce-eCccccchhhHHHHHHHHHHHHHHHHHHhh
Q 010589 223 LKSIIRMLPVWAAGILLVTASSHQHSFTIQQAR-----TMNTHLTHSFK-IPPASLSIFGILTMLIGLALYERIFVPIAR 296 (506)
Q Consensus 223 ~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~-----~~~~~~~~gf~-ip~~~~~~~n~l~iiil~pl~~~~~~pl~~ 296 (506)
-.++++.+...++.+.+|.++.+..+.+.+-+. .....-| +-. .|-.....+-.+.+++.+.+..+.+..+.+
T Consensus 780 slrL~r~~l~l~~l~~l~~iWsd~~~a~s~Ld~i~LW~~t~~~~g-~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle 858 (1109)
T PRK10929 780 SLRLVRSILTLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQG-VESLQPITLGSVLIAILVFIITTQLVRNLPALLE 858 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeEEeeeceecc-ccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777778777765443221 1111111 111 223334444556666666666666666555
Q ss_pred hh
Q 010589 297 RF 298 (506)
Q Consensus 297 r~ 298 (506)
|.
T Consensus 859 ~~ 860 (1109)
T PRK10929 859 LA 860 (1109)
T ss_pred HH
Confidence 53
No 300
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=29.89 E-value=1.7e+02 Score=28.62 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHcccChh
Q 010589 363 HGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 363 ~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
++++-.++-.+|++...++-+++
T Consensus 181 L~vaGgmlpavGfAmll~~M~~k 203 (265)
T COG3715 181 LAVAGGMLPAVGFAMLLNMMAKK 203 (265)
T ss_pred hhHhcchhHHHHHHHHHHHHHhc
Confidence 45556677777888777665554
No 301
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=29.53 E-value=5.4e+02 Score=25.11 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcc
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQ 381 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~ 381 (506)
..-...-+++++|-.+-.|...-+..+.
T Consensus 154 Y~~fv~~~~l~fGl~FelPli~~~L~~~ 181 (258)
T PRK10921 154 YLSFVMALFMAFGVSFEVPVAIVLLCWM 181 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444667788888888877777753
No 302
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=27.97 E-value=8.1e+02 Score=26.63 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHH
Q 010589 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGN 402 (506)
Q Consensus 364 ~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~ 402 (506)
..|.+...|.+-....+.--+.+-|.+++.-..+.+...
T Consensus 138 daG~vvl~PL~a~if~a~Gr~PlaGia~~fagvs~GFsA 176 (513)
T TIGR00819 138 DAALVILIPLGALIFHALGRHPLAGLAAAFAGVGCGFSA 176 (513)
T ss_pred hhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhhc
Confidence 566788888888888888788888888886665554443
No 303
>COG3817 Predicted membrane protein [Function unknown]
Probab=27.55 E-value=5.9e+02 Score=24.89 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH----HHHhHcccChhhHHHHHHHHHHHHHH
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGH----LEFLYDQSPESMRSTAVALYWIAISM 400 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~g----l~~~~~~aP~~~~g~~~g~~~l~~ai 400 (506)
++||--++|| .+-++|-+|.+... -+++....|...|=....+|-+..++
T Consensus 163 ~v~wa~iLPQ-~LaaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMal 216 (313)
T COG3817 163 QVSWAAILPQ-MLAALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMAL 216 (313)
T ss_pred HhhHHHHHHH-HHHHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence 5677778888 78888888877643 34555667777776666666655443
No 304
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=27.09 E-value=6.3e+02 Score=27.31 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 432 RLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
...+||+..+..-++..+..++.-|..
T Consensus 200 p~~N~yF~~aSt~~l~~v~~~vt~kiv 226 (502)
T PF03806_consen 200 PLMNYYFMIASTFVLTIVGTWVTEKIV 226 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 357778777776666666666655544
No 305
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.06 E-value=2.4e+02 Score=20.70 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHH
Q 010589 82 WYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIG 117 (506)
Q Consensus 82 ~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~ 117 (506)
-+.|+.-+|..++.+.+..-+..+++..+-.++.+.
T Consensus 6 t~fWs~il~~vvgyI~ssL~~~~~n~~~~~Ii~vi~ 41 (57)
T PF11151_consen 6 TFFWSFILGEVVGYIGSSLTGVTYNFTTAAIIAVIF 41 (57)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 467899999999988877777767665555444443
No 306
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=26.17 E-value=96 Score=32.84 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 432 RLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
...++|+..+..-++..+..++.-|-..-
T Consensus 211 p~~NwyF~~as~~vl~~i~~fvTdKivEP 239 (516)
T COG2978 211 PLMNWYFIAASVFVLTLIGWFVTDKIIEP 239 (516)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34677777777767666766666555433
No 307
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=25.22 E-value=59 Score=34.61 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 010589 33 GLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ 102 (506)
Q Consensus 33 ~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~ 102 (506)
......+.++..+.=+.+-..+...-++++|+..+++ ++.++.++|-+.+.+|..+|..+++|..
T Consensus 139 ~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~-----~~~~Ans~f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 139 PRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA-----KKTRANSVFSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred hHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh-----hhhccchhHHHHHHhcceeeeecccccC
Confidence 3566777788888888888888889999999998765 2333999999999999999988877654
No 308
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=24.78 E-value=8.1e+02 Score=25.54 Aligned_cols=94 Identities=7% Similarity=0.068 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
++||.-..|++......+..+++..-+++--.++.-|+..|++- +++-.+.++...+-. +..++.= +....
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNT-------FvAl~lQsilT~iVv-d~~g~~L-~ir~Q 395 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINT-------FVALILQSILTLIVV-DDRGLGL-DIRTQ 395 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHH-------HHHHHHHHhheEEEE-cccccCC-Cccee
Confidence 58889999999999999988888777774444444455555443 333333332222110 0022221 12111
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHh
Q 010589 432 --RLEHYYWLVSGIQVINLVYYVIC 454 (506)
Q Consensus 432 --~~~~~~~~la~l~~l~~~i~~~~ 454 (506)
-|..||.+++++-++...+....
T Consensus 396 ~~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 396 FVVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred EEEEeehHHHHHHHHHHHHHHHHHH
Confidence 24677888888877776654443
No 309
>PRK15049 L-asparagine permease; Provisional
Probab=24.39 E-value=9e+02 Score=25.93 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHH
Q 010589 75 RKWNFFNWYYFCMG 88 (506)
Q Consensus 75 ~r~~~f~~fy~~iN 88 (506)
.-+-..+|.||...
T Consensus 105 ~~gf~~GW~~~l~~ 118 (499)
T PRK15049 105 KAAYVAGWMYFINW 118 (499)
T ss_pred HhHHHHHHHHHHHH
Confidence 35566678887644
No 310
>PHA03281 envelope glycoprotein E; Provisional
Probab=24.35 E-value=88 Score=33.63 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hhccccccCc-ccccCCc--------cccccccCCCCCccccccccCCCCC
Q 010589 434 EHYYWLVSGIQVINLVYYVIC-AWFYTYKPLE-EVCEDDK--------DEDKKIEDGEIPYKRLNDAIGDGNG 496 (506)
Q Consensus 434 ~~~~~~la~l~~l~~~i~~~~-~~~y~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (506)
...---++++++++++++.++ ++++++|.+. .++.-++ ..|.+..|.++.+.+.+++||+.-|
T Consensus 557 ~~l~~~~a~~~ll~l~~~~~c~~~~~~~~~~~~~~~~~~~s~~Y~~lP~~d~ed~~~~~~~~~~~~~~~~~~~ 629 (642)
T PHA03281 557 AAITGGFAALALLCLAIALICTAKKFGHKAYRSDKAAYGQSMYYAGLPVDDFEDDEETDTDEEFGNAIGAECG 629 (642)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccccccccccccccCCCcccccccccchhhhhccccccccC
Confidence 444445566777777777666 3444443321 1111111 2444455677788889999987443
No 311
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=1.6e+02 Score=30.07 Aligned_cols=53 Identities=23% Similarity=0.501 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
+.+..|+++..++ +..+.--..+-+=|..|| .|+|+++.+.|.+++..++..+
T Consensus 185 p~~~~~~vl~~~f-------vl~tlaivLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 185 PRPLMWQVLGVLF-------VLVTLAIVLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred CCchhHHHHHHHH-------HHHHHHHHhcccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 5666666654333 111111223345577766 6888888888777776665443
No 312
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=23.45 E-value=9.1e+02 Score=25.97 Aligned_cols=11 Identities=0% Similarity=-0.185 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 010589 79 FFNWYYFCMGI 89 (506)
Q Consensus 79 ~f~~fy~~iNi 89 (506)
.-.|+||..+.
T Consensus 83 ~~~~~~W~~~~ 93 (507)
T TIGR00910 83 AAIFFGWFQIA 93 (507)
T ss_pred HHHHHHHHHHH
Confidence 33566776554
No 313
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=23.01 E-value=8.1e+02 Score=24.91 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
.-+|.++.+.+....-.+.......... ..|++.++.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 96 (385)
T PF03547_consen 60 LSLWFIPVFAFIIFILGLLLGFLLSRLF-RLPKEWRGV 96 (385)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccceE
Confidence 3455555444443333332222222222 344455444
No 314
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=21.78 E-value=2.2e+02 Score=25.11 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=7.2
Q ss_pred CCccccccccCCCC
Q 010589 469 DDKDEDKKIEDGEI 482 (506)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (506)
||++|+|-+..|.|
T Consensus 125 ~~~~~~~~~~~~~~ 138 (141)
T PRK04125 125 EDKKEKKVKIKGRQ 138 (141)
T ss_pred ccchhhhhhccccc
Confidence 55555555555544
No 315
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=21.64 E-value=7.9e+02 Score=24.27 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHH
Q 010589 287 YERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIV 324 (506)
Q Consensus 287 ~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~ 324 (506)
+|.++-.+..|..+.+ ....|+..|.++.++..++
T Consensus 15 md~~lL~~t~~~~~~~---~~~~Rll~~A~~Gal~~~~ 49 (293)
T PF03419_consen 15 MDYFLLWLTARLLKRR---ASRWRLLLGAAIGALYSLL 49 (293)
T ss_pred HHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHH
Confidence 3333344445554443 5777888887777664433
No 316
>PRK02463 OxaA-like protein precursor; Provisional
Probab=21.37 E-value=6.9e+02 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.635 Sum_probs=12.6
Q ss_pred hccccccchhhhhhHHHHHHHHHHH
Q 010589 101 IQDNVGWGLGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 101 l~~~~g~~~~F~i~ai~~~~~li~f 125 (506)
+.+..|..|+..|..+..++=++++
T Consensus 52 i~~~~g~~~GlaII~~TiivRlill 76 (307)
T PRK02463 52 FANNLGLGFGLAIIIVTIIVRLIIL 76 (307)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3344454445555555555555554
No 317
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.81 E-value=3.5e+02 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=15.3
Q ss_pred ccccCcccccC-Ccccccccc---CCCCCcccc
Q 010589 459 TYKPLEEVCED-DKDEDKKIE---DGEIPYKRL 487 (506)
Q Consensus 459 ~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~ 487 (506)
++.++.+.+|. +..++..+| .|||++.+-
T Consensus 76 r~~~~~d~~e~~sRA~eIlkER~AkGEItEEEY 108 (117)
T COG3462 76 RRGSDDDDAERGSRAEEILKERYAKGEITEEEY 108 (117)
T ss_pred cccchhcccccccHHHHHHHHHHhcCCCCHHHH
Confidence 44444444444 334555554 777776554
No 318
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.58 E-value=3.9e+02 Score=28.44 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=9.7
Q ss_pred ccccccCCCCCcccccc
Q 010589 473 EDKKIEDGEIPYKRLND 489 (506)
Q Consensus 473 ~~~~~~~~~~~~~~~~~ 489 (506)
++|.++.|+.+.+|+..
T Consensus 255 ~~~~~~lg~~s~~Ek~~ 271 (471)
T PF00939_consen 255 KKELKELGPMSKKEKKV 271 (471)
T ss_pred HHHHHhcCCCchhHhhh
Confidence 34444567776666554
No 319
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=20.29 E-value=47 Score=32.54 Aligned_cols=61 Identities=8% Similarity=0.094 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhh---c--cccccchhhhhhHHHHHHHHHHHHhcCcceeec
Q 010589 75 RKWNFFNWYYFCMGIATLTALTVVVYI---Q--DNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKL 135 (506)
Q Consensus 75 ~r~~~f~~fy~~iNiG~~i~~~~~~~l---~--~~~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~ 135 (506)
+|...-++.-|+-|+|++++.+.--+- + -+-.|.+.+.+.++..++-+++|.+..+++...
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~ 68 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIY 68 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 355555666788999999974322111 1 124599999988888888888877655555443
No 320
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.12 E-value=1.2e+02 Score=26.14 Aligned_cols=14 Identities=0% Similarity=-0.325 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 010589 435 HYYWLVSGIQVINL 448 (506)
Q Consensus 435 ~~~~~la~l~~l~~ 448 (506)
-...++++++.+.+
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 34444554444333
Done!