Query 010589
Match_columns 506
No_of_seqs 177 out of 1501
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 9E-23 3.1E-27 217.6 10.2 397 35-463 108-511 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 4.3E-20 1.5E-24 195.1 21.3 351 35-459 107-476 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.5 1.5E-13 5.3E-18 142.5 18.6 312 35-456 118-435 (451)
4 3o7q_A L-fucose-proton symport 99.3 2.8E-10 9.7E-15 117.4 22.2 87 35-127 116-228 (438)
5 2gfp_A EMRD, multidrug resista 99.1 7.5E-11 2.6E-15 119.5 5.8 83 35-123 87-169 (375)
6 4gc0_A D-xylose-proton symport 98.9 1.2E-08 4.1E-13 106.9 16.0 83 34-122 124-214 (491)
7 2cfq_A Lactose permease; trans 98.6 6.1E-08 2.1E-12 100.0 8.9 89 352-455 311-400 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.4 7.2E-06 2.5E-10 84.3 18.9 143 270-456 65-208 (451)
9 3o7q_A L-fucose-proton symport 98.3 3.2E-05 1.1E-09 79.2 18.6 114 270-413 64-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 98.2 4E-05 1.4E-09 80.0 18.2 141 270-458 57-200 (491)
11 2gfp_A EMRD, multidrug resista 98.0 0.00017 5.8E-09 72.3 16.9 111 270-413 38-148 (375)
12 2xut_A Proton/peptide symporte 97.8 0.00028 9.6E-09 74.2 15.2 140 270-456 57-200 (524)
13 4gc0_A D-xylose-proton symport 97.1 0.0071 2.4E-07 62.6 15.1 63 352-414 125-187 (491)
14 2cfq_A Lactose permease; trans 96.2 0.0014 4.7E-08 67.1 2.2 88 36-129 312-400 (417)
15 2knc_A Integrin alpha-IIB; tra 28.7 61 0.0021 22.5 3.6 14 441-454 21-34 (54)
16 3l1l_A Arginine/agmatine antip 23.6 3E+02 0.01 27.0 9.6 14 75-88 84-97 (445)
17 4djk_A Probable glutamate/gamm 21.3 3.2E+02 0.011 27.4 9.4 14 76-89 87-100 (511)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.87 E-value=9e-23 Score=217.64 Aligned_cols=397 Identities=21% Similarity=0.332 Sum_probs=229.7
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|+..|+..++++|.+++++. .++...|++++.+.++|..++|.+++++.++.||++.|.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 467788899999999999999999999999987641 23577889999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+.+++.++++.+.+|++++..+..+.+..+.+++..+. +.......... .........+......+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 260 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGK-GNIGLVLALIG---GVSAAYALVNIPTLGIVAG 260 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTH-HHHHHHHHHHH---HHHHHHTGGGTTTTCSSHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhccc-Cccchhhhhhh---hhhhhhhhcccchhhhhhh
Confidence 9888887777666555443333333333222233332222221100 00000000000 0000000000000000000
Q ss_pred hhccccCccCCCCCCCcc-------cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCccee
Q 010589 195 AATVTEGETTNSSPPNLW-------RLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKI 267 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~i 267 (506)
+.+..... .+.....+| +.+++.+.+++|+.+..++++....+++..+.|..+.+..+..+++.+. + .
T Consensus 261 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 335 (524)
T 2xut_A 261 LCCAMVLV-MGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-F 335 (524)
T ss_dssp HHHHHHHH-HHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-S
T ss_pred hhhhhhhh-hcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-e
Confidence 00000000 000000111 0112223455666766777777777888888887776666655554331 1 3
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 010589 268 PPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKA 347 (506)
Q Consensus 268 p~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 347 (506)
+.+.+..++.+..++..|+.+++..|..+|++.+. ++.+++.+|+++.++++++.+..+..+ . .
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~------~-------~ 399 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMM------D-------G 399 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------T-------T
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHh------c-------C
Confidence 56777888888899999999987777666653222 567788899999998887765532100 0 0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCC
Q 010589 348 IIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRN 427 (506)
Q Consensus 348 ~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ 427 (506)
....+.+|+++.+++.++++.+..|...+++.+.+|+++||.++|++.....+|+.+++.+...+.+.+. ++|.++.+
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~--~~~~~~~~ 477 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV--TEQIVQTG 477 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH--HHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccccccc
Confidence 1135778899999999999999999999999999999999999999999999999999998877653210 02321000
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 010589 428 LNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPL 463 (506)
Q Consensus 428 ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~ 463 (506)
.+. ..+.|++.+++++++.++++++.++++++++
T Consensus 478 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 478 MSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp SCH--HHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 111 1223778888888888888877776655443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=4.3e-20 Score=195.11 Aligned_cols=351 Identities=16% Similarity=0.231 Sum_probs=228.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...|...++++|.+++++ ++|..++++++.+.++|..++|.+++++.++.||++.|+++
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46778889999999999999999999999998764 25889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecC--CCCCc--hhHHHHHHHH--------------HHHhccccCCCCcccccccCCcccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLK--PGGSP--LTRLTQVIVA--------------AFKKRKAIVPEDPRLLYRNGELDSV 176 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~--p~~~p--l~~~~~vl~~--------------a~~~~~~~~~~~~~~~y~~~~~~~~ 176 (506)
++..+++++.+++.++++...+ +..++ ..+..+.+.. ...... .+. ...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~---~~~-----~~~----- 249 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW---NSL-----PAY----- 249 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS---CCT-----THH-----
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccC---ccc-----ccc-----
Confidence 8888887777655433322211 11111 1111110000 000000 000 000
Q ss_pred cccccccccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 010589 177 ISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQART 256 (506)
Q Consensus 177 ~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~ 256 (506)
............... ....|+- ......++++..+.+++++...+++..+.+..+.+..+..+
T Consensus 250 ------------~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4aps_A 250 ------------INLLTIVAIAIPVFY----FAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE 312 (491)
T ss_dssp ------------HHHHHHHHHHHHHHH----HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH
T ss_pred ------------hhhhhHHHHHHHHHH----HHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 000000000000000 0000000 00112345566666778888889999998887765544333
Q ss_pred -hccCCCCcceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 257 -MNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKV 335 (506)
Q Consensus 257 -~~~~~~~gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~ 335 (506)
.+.+. .+.+.+..++.+..++..|+.+++. +|.+++.. ....++.+|+++.++++++.+.....
T Consensus 313 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~----~r~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---- 377 (491)
T 4aps_A 313 RVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLW----TAWKKNQP--SSPTKFAVGLMFAGLSFLLMAIPGAL---- 377 (491)
T ss_dssp SCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHH----HHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH----
T ss_pred HhccCc-----cCHHHHhccchHHHHHHHHHHHHHH----HHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 33221 4567888999999999999988854 44433322 56778889999999998887765421
Q ss_pred hhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 336 AANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKY 415 (506)
Q Consensus 336 ~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~ 415 (506)
.+ ...+.+.+|+++.+++.++|+.+..|...+++.+..|++.||.++|++.....+|..+++.+...+.+.
T Consensus 378 ---~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 378 ---YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp ---CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred ---cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 011457888999999999999999999999999999999999999999999999999999888766532
Q ss_pred cCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 416 TGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYT 459 (506)
Q Consensus 416 ~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~ 459 (506)
.+...|+.++++++++.++++++.++.+
T Consensus 449 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 449 ----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp ----------------STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256677788888888777777665543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.54 E-value=1.5e-13 Score=142.50 Aligned_cols=312 Identities=9% Similarity=0.012 Sum_probs=181.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i 113 (506)
+.+.++++..+.++|.|...|...+++.|.++++ +|+++++++..+.++|.+++|.+++++.+..| |++.|++
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4667888999999999999999999999999865 69999999999999999999999999888898 9999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhh
Q 010589 114 PAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLD 193 (506)
Q Consensus 114 ~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~ 193 (506)
.++..++..++.++..++ +|.... .+..+...+. .+.+.. .. ..+..+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~----~~~~~~-------------~~~~~~~~~~---~~~~~~-------~~--~~~~~~~~~ 242 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRD----TPQSCG-------------LPPIEEYKND---YPDDYN-------EK--AEQELTAKQ 242 (451)
T ss_dssp HHHHHHHHHHHHHHHCCC----SSTTTC-------------CCSCTTTCCC-------------------------CCTH
T ss_pred HHHHHHHHHHHHHhhccC----CHhhcC-------------CCChhhhccc---ccccch-------hh--hhccccccc
Confidence 888776655544333221 111100 0000000000 000000 00 000000000
Q ss_pred hhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCc---c
Q 010589 194 KAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPP---A 270 (506)
Q Consensus 194 ~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~---~ 270 (506)
.. ..++++ .|+++ .+.+...+.+..+....+... ..+....+ .++ +
T Consensus 243 ~~---------------~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g----~~~~~~~ 291 (451)
T 1pw4_A 243 IF---------------MQYVLP------NKLLW---YIAIANVFVYLLRYGILDWSP---TYLKEVKH----FALDKSS 291 (451)
T ss_dssp HH---------------HHHTSS------CHHHH---HHHHHHHHHHHHHHHHHHHHH---HHBTTBSC----CCHHHHH
T ss_pred ch---------------HHHHHc------CHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHhcC----CCHHHHH
Confidence 00 000000 12222 222222233332222222222 12222121 222 3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINI-LATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
.+.....+..++..++..+ +.+|..+ .+.+.+.++.++.. ++++..... .
T Consensus 292 ~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 342 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTLVTIATIVYWMN--------------------P 342 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC--------------------C
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh--------------------c
Confidence 4555556666666666555 3444310 11222344444433 444333220 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISM-GNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~ai-g~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
..+.++.+...++.+++.....+....++.+..|++.||.++|++.....+ |..+++.+...+.+..
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------------ 410 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------------ 410 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------------
T ss_pred ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 124566777778888988888888899999999999999999999999999 9999998887765321
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
.+...|++.+++++++.++++...+
T Consensus 411 ---g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 411 ---GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1356677778877777776666543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.28 E-value=2.8e-10 Score=117.39 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc-cccc-------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ-DNVG------- 106 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~-~~~g------- 106 (506)
+.+.++++..+.++|.|...+...++++|.++++ +|..+++++..+.++|..+++.+++++. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 189 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 5788899999999999999999999999999876 5999999999999999999999999988 5554
Q ss_pred ------------------cchhhhhhHHHHHHHHHHHHh
Q 010589 107 ------------------WGLGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 107 ------------------~~~~F~i~ai~~~~~li~f~~ 127 (506)
|++.|.+.++..++..+.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899998776665555544443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.07 E-value=7.5e-11 Score=119.51 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.+...|...+++.|.++++ +|+++++++..+.++|..++|.+++++.++.||++.|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 5777888899999999999999999999999765 5889999999999999999999999999989999999987
Q ss_pred HHHHHHHHH
Q 010589 115 AIGMVMSVL 123 (506)
Q Consensus 115 ai~~~~~li 123 (506)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 776665554
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.93 E-value=1.2e-08 Score=106.95 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc--------c
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN--------V 105 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~--------~ 105 (506)
.+.+.++++..+.++|.|+.-+...++++|..+++ +|+...+++..+..+|.++++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 36788999999999999999999999999998865 699999999999999999998887665443 3
Q ss_pred ccchhhhhhHHHHHHHH
Q 010589 106 GWGLGFGIPAIGMVMSV 122 (506)
Q Consensus 106 g~~~~F~i~ai~~~~~l 122 (506)
+|++.+.+..+..++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 198 GWRYMFASECIPALLFL 214 (491)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred hhHHHhhhhhhhhhhhh
Confidence 46666665555444433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.62 E-value=6.1e-08 Score=100.01 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVAL-YWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNR 430 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~-~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~ 430 (506)
+.++++...++.+++.....+....++.+..|++.||..++. +.....+|+.+++.+...+.+..
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-------------- 376 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------------- 376 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--------------
Confidence 344555556677777766677778899999999999999888 56777888888887776554211
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 431 GRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 431 ~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
.+...|.+.+++++++.++.+...
T Consensus 377 -g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 377 -GFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred -CcHHHHHHHHHHHHHHHHHHHhhh
Confidence 124556677777777766655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.44 E-value=7.2e-06 Score=84.33 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=102.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ .+|.+ +.+-+.+|.++.+++.+..++....
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~~------------------ 115 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------ 115 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHSC-------HHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHhcC-------chHHHHHHHHHHHHHHHHHHhhhhc------------------
Confidence 456666777777777777664 44432 3335778888888888777662100
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC-cCCCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNN-WLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~-w~~~~~l 428 (506)
..+.++++...++.|++.....|...+++.+..|++.|+.++|++.....+|..+++.+........ + |-
T Consensus 116 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----g~w~----- 186 (451)
T 1pw4_A 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----NDWH----- 186 (451)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT----CCST-----
T ss_pred cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccHH-----
Confidence 0246678888999999999999999999999999999999999999999999999998886643211 2 32
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..|++.++++++..++.++..+
T Consensus 187 ------~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 187 ------AALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp ------TCTHHHHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHHHHHHhhcc
Confidence 2366666666666655555444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.26 E-value=3.2e-05 Score=79.19 Aligned_cols=114 Identities=10% Similarity=-0.012 Sum_probs=90.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..++ .+|.+ +.+-+.+|.++.+++.+.......
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~------------------- 113 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGIL----MKKLS-------YKAGIITGLFLYALGAALFWPAAE------------------- 113 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHH----HHHSC-------HHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHhc-------chHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence 456677777777777877774 44432 334478888888888877643210
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++...++.|+|.....|....++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357778889999999999999999999999999999999999999999999999999887765
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.21 E-value=4e-05 Score=79.95 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=102.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhh-hcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARR-FTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r-~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
+++.+...+...+..|+..++ .+| .+ +.+-+.+|.++.+++.+..+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l----~dr~~g-------~r~~~~~~~~~~~~~~~~~~~--------------------- 104 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFV----ADRIIG-------ARPAVFWGGVLIMLGHIVLAL--------------------- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHTSC-------HHHHHHHHHHHHHHHHHHHHS---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hhcccc-------chHHHHHHHHHHHHHHHHHHH---------------------
Confidence 456677777777888877774 444 32 233467788888777766544
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh--HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM--RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR 426 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~--~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~ 426 (506)
..+.++++...++.|+|+....|...+++.+..|++. |+..++.+.....+|..+++.+...+.... +
T Consensus 105 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----g----- 174 (491)
T 4aps_A 105 -PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA----G----- 174 (491)
T ss_dssp -CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----C-----
T ss_pred -hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh----h-----
Confidence 1246677888899999999999999999999999988 888899899999999999998887765321 1
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 427 NLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 427 ~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
....|++.++..+++.+++++..+++
T Consensus 175 ------~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 175 ------YHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 24456666666666666666655544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.98 E-value=0.00017 Score=72.31 Aligned_cols=111 Identities=21% Similarity=0.185 Sum_probs=88.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..+ +.+|.++| +-+.+|.++.+++.+..+..
T Consensus 38 g~~~~~~~~~~~~~~~~~g~----l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 85 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGP----ISDRVGRR-------PVILVGMSIFMLATLVAVTT--------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHH----HHTTSCCC-------CCCHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhCCc-------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence 45566677777777777666 45555422 23668888888887776653
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....|...+++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 86 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 86 -SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred -ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 256678888899999999999999999999999999999999999999999999998887664
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.78 E-value=0.00028 Score=74.19 Aligned_cols=140 Identities=15% Similarity=0.081 Sum_probs=96.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhh-cCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRF-TGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~-~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
+++.+...+..++..|+..+ +.+|. + +.+-+.+|.++.+++.+..+..
T Consensus 57 g~~~~~~~~~~~~~~~~~G~----l~dr~~g-------~r~~~~~~~~~~~~~~~~~~~~-------------------- 105 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGW----IADRFFG-------KYNTILWLSLIYCVGHAFLAIF-------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHH----HHTTSSC-------SHHHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHhc-------chHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 44556666666677777666 34454 2 2334667777777777666541
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHH---HHHHHHHHHHHHHHHHHhhhcccCCCCCcCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVAL---YWIAISMGNYIGTLVVTLVHKYTGSKNNWLPD 425 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~---~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~ 425 (506)
+.+.++++...++.++++....|...+++.+..|++.|+..++. +.....+|..+++.+...+....
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------- 175 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--------- 175 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS---------
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 12567788888999999999999999999999999999877776 88888999999888776654211
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 426 RNLNRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 426 ~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
.....|++.+++.++..+++++..+
T Consensus 176 ------g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 176 ------GAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1245566666666655555544333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.09 E-value=0.0071 Score=62.60 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
+.+.++..-++.|+|+....+.+..++.+.+|++.|+..++.+.....+|..++..+......
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 566788889999999999999999999999999999999999999999999998887766553
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.25 E-value=0.0014 Score=67.10 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHH-HHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNW-YYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~-fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
.+.+.+...+.+++.+.+-+...+...|.++++ .|++++++ +..+.++|..++|.++|++.++.||+..|.+.
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 344444455556665555555667888888754 58888888 47788899999999999999989999999988
Q ss_pred HHHHHHHHHHHHhcC
Q 010589 115 AIGMVMSVLAFVFGS 129 (506)
Q Consensus 115 ai~~~~~li~f~~~~ 129 (506)
++..+++.++.+...
T Consensus 386 ~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 386 GLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhhh
Confidence 888777776654433
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.65 E-value=61 Score=22.54 Aligned_cols=14 Identities=7% Similarity=0.439 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q 010589 441 SGIQVINLVYYVIC 454 (506)
Q Consensus 441 a~l~~l~~~i~~~~ 454 (506)
+++.++.++++.+.
T Consensus 21 ~GLllL~li~~~Lw 34 (54)
T 2knc_A 21 GGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 16
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=23.64 E-value=3e+02 Score=26.95 Aligned_cols=14 Identities=14% Similarity=-0.166 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHH
Q 010589 75 RKWNFFNWYYFCMG 88 (506)
Q Consensus 75 ~r~~~f~~fy~~iN 88 (506)
..+...+|.||..+
T Consensus 84 ~~g~~~g~~~~~~~ 97 (445)
T 3l1l_A 84 FLGYQTNVLYWLAC 97 (445)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35556677766544
No 17
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=21.31 E-value=3.2e+02 Score=27.38 Aligned_cols=14 Identities=0% Similarity=-0.541 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 010589 76 KWNFFNWYYFCMGI 89 (506)
Q Consensus 76 r~~~f~~fy~~iNi 89 (506)
-+...+|.||.-++
T Consensus 87 ~g~~~g~~~~~~~~ 100 (511)
T 4djk_A 87 WGFAAISFGYLQIA 100 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444566665544
Done!