BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010590
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LHYA EN +E+VK LL GA D N G+TPLH AAE ++V +LL ADPN
Sbjct: 74 LHYAAENGHKEIVKLLLSKGA-DPNAKDSD-GRTPLHYAAENGHKEIVKLLLSKGADPNT 131
Query: 349 RTVDGVTPLDILRTLTSDFLFK 370
DG TPLD+ R ++ + K
Sbjct: 132 SDSDGRTPLDLAREHGNEEIVK 153
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LHYA EN +E+VK LL G AD N G+TPLH AAE ++V +LL ADPN
Sbjct: 41 LHYAAENGHKEIVKLLLSKG-ADPNAKDSD-GRTPLHYAAENGHKEIVKLLLSKGADPNA 98
Query: 349 RTVDGVTPLDIL-----RTLTSDFLFKGAVP 374
+ DG TPL + + L KGA P
Sbjct: 99 KDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 292 AVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV 351
A EN +++ VK LLE GA D N + G+TPLH AAE ++V +LL ADPN +
Sbjct: 11 AAENGNKDRVKDLLENGA-DPN-ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 352 DGVTPLDIL-----RTLTSDFLFKGAVP 374
DG TPL + + L KGA P
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADP 96
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A EN +EVVK LL GA D N GKTPLH+AAE ++V +LL ADPN
Sbjct: 74 LHLAAENGHKEVVKLLLSQGA-DPNAKDSD-GKTPLHLAAENGHKEVVKLLLSQGADPNT 131
Query: 349 RTVDGVTPLDILRTLTSDFLFK 370
DG TPLD+ R ++ + K
Sbjct: 132 SDSDGRTPLDLAREHGNEEVVK 153
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 258 RRMRRALDSSDVELVK-LMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVN 313
+R+ A ++ + + VK L+ G +N D LH A EN +EVVK LL G AD N
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPN 64
Query: 314 YPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
GKTPLH+AAE ++V +LL ADPN + DG TPL
Sbjct: 65 AKDSD-GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 107
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 270 ELVKLMV-MGEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH 325
E+VKL++ G +N ++ LH+A EN +EVVK L+ GA DVN G+TPLH
Sbjct: 51 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNAKDSD-GRTPLH 108
Query: 326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFK 370
AAE ++V +L+ AD N DG TPLD+ R ++ + K
Sbjct: 109 HAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 258 RRMRRALDSSDVELVK-LMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAADVN 313
+R+ A ++ + + VK L+ G +N ++ LH+A EN +EVVK L+ G ADVN
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG-ADVN 64
Query: 314 YPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
G+TPLH AAE ++V +L+ AD N + DG TPL
Sbjct: 65 AKDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 107
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 270 ELVKLMV-MGEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH 325
E+VKL++ G +N ++ LHYA + +E+VK L+ GA DVN G+TPLH
Sbjct: 51 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA-DVNAKDSD-GRTPLH 108
Query: 326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFK 370
AA+ ++V +L+ AD N DG TPLD+ R ++ + K
Sbjct: 109 YAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 258 RRMRRALDSSDVELVK-LMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAADVN 313
+R+ A ++ + + VK L+ G +N ++ LHYA + +E+VK L+ G ADVN
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVN 64
Query: 314 YPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
G+TPLH AA+ ++V +L+ AD N + DG TPL
Sbjct: 65 AKDSD-GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL 107
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 292 AVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV 351
AV+N ++V+ LLE G A+VN+ G TPLH A +M D+V +LL H ADP +R
Sbjct: 32 AVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 90
Query: 352 DGVTPLDILRTLTSD------FLFKGA 372
+G TP IL + FL KGA
Sbjct: 91 NGATPF-ILAAIAGSVKLLKLFLSKGA 116
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 286 ALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV---LLDH 342
A AL A E EV+K LL+ ADVN +H D+ A+ LLDH
Sbjct: 169 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 228
Query: 343 HADPNVRTVDGVTPL 357
AD NVR G TPL
Sbjct: 229 GADVNVRGERGKTPL 243
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 292 AVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV 351
AV+N ++V+ LLE G A+VN+ G TPLH A +M D+V +LL H ADP +R
Sbjct: 12 AVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70
Query: 352 DGVTPL 357
+G TP
Sbjct: 71 NGATPF 76
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 286 ALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV---LLDH 342
A AL A E EV+K LL+ ADVN +H D+ A+ LLDH
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 343 HADPNVRTVDGVTPL 357
AD NVR G TPL
Sbjct: 209 GADVNVRGERGKTPL 223
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N + L LH A + E+V+ LL+ GA D
Sbjct: 16 KKLLEAARA--GQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN G TPLH+AA+ ++V VLL H AD N + +G TPL
Sbjct: 73 VN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPL 117
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A +N E+V+ LL+ GA DVN G TPLH+AA ++V VLL + AD N
Sbjct: 84 LHLAADNGHLEIVEVLLKHGA-DVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 269 VELVKLMVMGEGLNLDEALA-----LHYAVENCSREVVKALLELGAADVNYPAGPAGKTP 323
VE V ++ G N+D ++ L+ A EN R VK LLE GA DVN G +P
Sbjct: 114 VECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ--GKGQDSP 169
Query: 324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL---RTLTSDFLFKGAVPGLTHIE 380
LH A S ++ +L+D AD + +G P++++ L FL + P L +
Sbjct: 170 LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLC 229
Query: 381 PNKLRLCLELVQ 392
++R C + Q
Sbjct: 230 RLRIRKCFGIQQ 241
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N D LH A N E+V+ LL+ GA DVN +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA-DVN-AS 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA ++V VLL H AD N DG TPL +
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL 119
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA+ ++V VLL H AD N
Sbjct: 84 LHLAAATGHLEIVEVLLKHGA-DVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV 338
E N D LH AV + E+V+ L + GA D+N P G+TPLH+A E + ++ +
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 339 LLDHHADPNVRTVDGVTPL 357
LL ADP R G TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV 338
E N D LH AV + E+V+ L + GA D+N P G+TPLH+A E + ++ +
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 339 LLDHHADPNVRTVDGVTPL 357
LL ADP R G TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N ++ LH V N E+++ LL+ AAD
Sbjct: 16 KKLLEAARA--GQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY-AAD 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN + +G TPLH+AA ++V VLL + AD N G TPL
Sbjct: 73 VN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPL 117
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AAE ++V VLL + AD N
Sbjct: 84 LHLAAYRGHLEIVEVLLKYGA-DVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 263 ALDSSDVELVKLMV-MGEGLNLDEA---LALHYAVENCSREVVKALLELGAADVNYPAGP 318
A + +E+VKL++ G +N + LH A N EVVK LLE GA DVN
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN-AKDK 66
Query: 319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G+TPLH+AA ++V +LL+ AD N + +G TPL +
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A N EVVK LLE GA DVN G+TPLH+AA ++V +LL+ AD N
Sbjct: 6 LHLAARNGHLEVVKLLLEAGA-DVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 349 RTVDGVTPLDI 359
+ +G TPL +
Sbjct: 64 KDKNGRTPLHL 74
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 263 ALDSSDVELVKLMV-MGEGLNLDEA---LALHYAVENCSREVVKALLELGAADVNYPAGP 318
A + +E+VKL++ G +N + LH A N EVVK LLE GA DVN
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN-AKDK 99
Query: 319 AGKTPLHIAAEMVSPDMVAVLLDHHA 344
G+TPLH+AA ++V +LL+ A
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G+TPLH+AA ++V +LL+ AD N + +G TPL +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 41
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 268 DVELVKLMVMGEGLN-LDEA--LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
D E+ LM G +N +D+A LH A + E+V+ LL+ GA DVN + G+TPL
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVN-ASDSWGRTPL 84
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
H+AA + ++V VLL++ AD N + G T DI
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL 363
+L ADVN AG TPLH+AA+ ++V VLL H AD N G TPL + T+
Sbjct: 32 ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATV 90
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N D LH A E+V+ LL+ GA DVN
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVN-AK 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA ++V VLL AD N + DG TPL +
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 119
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA ++V VLL AD N
Sbjct: 84 LHLAAREGHLEIVEVLLKAGA-DVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 268 DVELVKLMVMGEGLN-LDEA--LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
D E+ LM G +N +D+A LH A + E+V+ LL+ GA DVN + G+TPL
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVN-ASDIWGRTPL 84
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
H+AA + ++V VLL++ AD N + G T DI
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL 363
+L ADVN AG TPLH+AA+ ++V VLL H AD N + G TPL + T+
Sbjct: 32 ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATV 90
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A N EVVK LLE GA DVN G+TPLH+AA ++V +LL+ AD N
Sbjct: 6 LHLAARNGHLEVVKLLLEAGA-DVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 349 RTVDGVTPLDI 359
+ +G TPL +
Sbjct: 64 KDKNGRTPLHL 74
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 263 ALDSSDVELVKLMV-MGEGLNLDEA---LALHYAVENCSREVVKALLELGAADVNYPAGP 318
A + +E+VKL++ G +N + LH A N EVVK LLE GA DVN
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN-AKDK 66
Query: 319 AGKTPLHIAAEMVSPDMVAVLLDHHA 344
G+TPLH+AA ++V +LL+ A
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G+TPLH+AA ++V +LL+ AD N + +G TPL +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 41
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N D LH A E+V+ LL+ GA DVN
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVN-AK 64
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA ++V VLL AD N + DG TPL +
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA ++V VLL AD N
Sbjct: 72 LHLAAREGHLEIVEVLLKAGA-DVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 349 RTVDGVTPLDI 359
+ G TP D+
Sbjct: 130 QDKFGKTPFDL 140
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N D LH A E+V+ LL+ GA DVN
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVN-AK 64
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA ++V VLL AD N + DG TPL +
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA ++V VLL AD N
Sbjct: 72 LHLAAREGHLEIVEVLLKAGA-DVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 349 RTVDGVTPLDI 359
+ G TP D+
Sbjct: 130 QDKFGKTPFDL 140
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEALAL---HYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N ++ + L H A N E+V+ LL+ GA DVN
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA-DVN-AI 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G+TPLH+ A ++V VLL H AD N + G T DI
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
+L ADVN G TPLH+AA ++V VLL + AD N G TPL ++
Sbjct: 32 ILMANGADVN-AEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLV 87
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 268 DVELVKLMVMGEGLN-LDEA--LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
D E+ LM G +N +D+A LH A + E+V+ LL+ GA DVN G+TPL
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVN-ARDIWGRTPL 84
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
H+AA + ++V VLL++ AD N + G T DI
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL 363
+L ADVN AG TPLH+AA+ ++V VLL H AD N R + G TPL + T+
Sbjct: 32 ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATV 90
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A +N E+V+ LL+ GA DVN G TPLH+AA+ ++V VLL H AD N
Sbjct: 84 LHLAADNGHLEIVEVLLKYGA-DVN-AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
+L ADVN G TPLH+AA + P++V VLL H AD N R DG TPL
Sbjct: 32 ILMANGADVN-AHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPL 84
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDE---ALALHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N + + LH A E+V+ LL+ GA D
Sbjct: 16 KKLLEAARA--GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN G TPLH+AA+ ++V VLL + AD N + G+TPL
Sbjct: 73 VN-ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPL 117
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 253 EDQKIRRMRRALDSSDVELVKLMVM-GEGLNLDEALA---LHYAVENCSREVVKALLELG 308
+D + + A + +E+V++++ G +N ++ LH A + E+V+ LL+ G
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 309 AADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
A DVN AG TPLH+AA ++V VLL H AD N + G+T DI
Sbjct: 96 A-DVN-AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL GA DVN G TPLH+AA + ++V VLL + AD N
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGA-DVN-AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNA 96
Query: 349 RTVDGVTPL 357
+ G+TPL
Sbjct: 97 KDATGITPL 105
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPL++AA ++V VLL H AD N
Sbjct: 72 LHLAASLGHLEIVEVLLKYGA-DVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 130 QDKFGKTAFDI 140
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL 363
G+TPLH+AA + ++V VLL + AD N +G TPL + +L
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL 78
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 269 VELVKLMVM-GEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
+E+V++++ G +N D++L LH A + EVV+ LL+ GA DVN G TPL
Sbjct: 60 LEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA-DVN-ANDHNGFTPL 117
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
H+AA + ++V VLL H AD N + G T DI
Sbjct: 118 HLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N + + LH A E+V+ LL+ GA D
Sbjct: 16 KKLLEAARA--GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN G TPLH+AA+ ++V VLL + AD N +G TPL
Sbjct: 73 VNADD-SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPL 117
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D LH A +N E VK LL GA DVN G TPLH+AA+ ++V +LL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGA-DVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 344 ADPNVRTVDGVTP 356
AD N R+ DG TP
Sbjct: 66 ADVNARSKDGNTP 78
Score = 35.4 bits (80), Expect = 0.069, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 270 ELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI 326
E+ KL+ G +N D LH A +N E+VK LL GA DVN G TP H+
Sbjct: 24 EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-DVN-ARSKDGNTPEHL 81
Query: 327 AAEMVSPDMVAVLLDHHADPNVRT 350
A + ++V +L AD N R+
Sbjct: 82 AKKNGHHEIVKLLDAKGADVNARS 105
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH AA+ + V LL AD N R+ DG TPL +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL 48
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G G+TPLH+AA ++V VLL H AD N
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGA-DVN-ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 109 QDKFGKTAFDI 119
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
+L ADVN G TPLH+AA + ++V VLL + AD N G TPL +
Sbjct: 32 ILTANGADVN-ANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHL 86
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N ++ LH A E+V+ LL+ GA DVN
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA-DVN-AL 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
+G TPLH+AA+ ++V VLL + AD N G TPL +
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL 119
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 280 GLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVL 339
L+ + LH A + E+V+ LL+ GA DVN G TPLH+AA+ ++V VL
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGA-DVN-ADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 340 LDHHADPNVRTVDGVTPLDI 359
L + AD N + G T DI
Sbjct: 133 LKYGADVNAQDKFGKTAFDI 152
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLN-LDE--ALALHYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N LDE LH A + E+V+ LL+ GA DVN
Sbjct: 19 LEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA-DVN-AE 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA ++V VLL H AD N + G T DI
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N + + LH A E+V+ LL+ GA D
Sbjct: 16 KKLLEAARA--GRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN G TPLH+AA ++V VLL + AD N + +G+TPL
Sbjct: 73 VN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL 117
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA ++V VLL + AD N
Sbjct: 84 LHLAAHFGHLEIVEVLLKNGA-DVN-AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N ++A LH A N E+V+ LL+ GA D
Sbjct: 16 KKLLEAARA--GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN AG TPL +AA ++V VLL + AD N ++G TPL
Sbjct: 73 VN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 299 EVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLD 358
E+V+ LL+ GA DVN G TPLH+AA ++V VLL + AD N + G T D
Sbjct: 94 EIVEVLLKNGA-DVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151
Query: 359 I 359
I
Sbjct: 152 I 152
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A EV K LL+ A VN A +TPLH AA + +MV +LL+++A+PN+
Sbjct: 51 LHMAARAGHTEVAKYLLQ-NKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Query: 349 RTVDGVTPLDI 359
T G TPL I
Sbjct: 109 ATTAGHTPLHI 119
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A + ++VK LL+ ADVN G +PLH AA+ D+V +LL + A PN
Sbjct: 315 LHVASHYGNIKLVKFLLQ-HQADVNAKT-KLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Query: 349 RTVDGVTPLDILRTL 363
+ DG TPL I + L
Sbjct: 373 VSSDGTTPLAIAKRL 387
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A + EV ++LL+ G + G TPLH+AA+ +MVA+LL A+ N+
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 349 RTVDGVTPLDIL 360
G+TPL ++
Sbjct: 274 GNKSGLTPLHLV 285
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E V ALLE A+ G TPLH+AA+ + +LL+ A PN
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTK--KGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 349 RTVDGVTPLDI 359
+G+TPL +
Sbjct: 175 AGKNGLTPLHV 185
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D+ LH A +VK LLE A+ N A AG TPLHIAA + V LL+
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLE-NNANPNL-ATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 344 ADPNVRTVDGVTPLDI 359
A T G TPL +
Sbjct: 137 ASQACMTKKGFTPLHV 152
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYP--AGPAGKTPLHIAAEMVSPDMVAVLLDHHADP 346
LH A + V + LLE A +P AG G TPLH+A + D+V +LL P
Sbjct: 150 LHVAAKYGKVRVAELLLERDA----HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 347 NVRTVDGVTPLDI 359
+ +G TPL I
Sbjct: 206 HSPAWNGYTPLHI 218
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
TPLH+A+ M +V LL A PNV V TPL
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL 51
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 269 VELVKLMVMGEGLNLDEALA-----LHYAVENCSREVVKALLELGAADVNYPAGPAGKTP 323
VE V ++ G N+D ++ L+ A EN R VK LLE GA DVN G +P
Sbjct: 170 VECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ--GKGQDSP 225
Query: 324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
LH S ++ +L+D AD + +G P++++
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEA---LALHYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N ++ LH A + E+V+ LL+ GA DVN
Sbjct: 19 LEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA-DVN-AH 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA ++V VLL H AD N + G T DI
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 266 SSDVELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNYPAGPAG 320
S +E+V+++ + G ++D A LH A E+V+ LL+ GA DVN G
Sbjct: 57 SGHLEIVEVL-LKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA-DVN-AFDMTG 113
Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
TPLH+AA+ ++V VLL + AD N + G T DI
Sbjct: 114 STPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
+L ADVN G TPLH+AA ++V VLL H AD + V G TPL +
Sbjct: 32 ILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHL 86
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A + +V+ L+ LGA DVN G+T LH+A ++ +PD+V++LL AD N
Sbjct: 121 LHLASIHGYLGIVELLVSLGA-DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 349 RTVDGVTPLDI 359
T G +P +
Sbjct: 180 VTYQGYSPYQL 190
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
+TPLH+A P++ LL DP +R G TPL
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
N + LH A + +V+ L+ LGA DVN G+T LH+A ++ +PD+V++LL
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGA-DVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Query: 342 HHADPNVRTVDGVTPLDI 359
AD N T G +P +
Sbjct: 170 CGADVNRVTYQGYSPYQL 187
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
+TPLH+A P++ LL DP +R G TPL +
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 81
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPA 319
+R LDS+ + L E N D ALH AV +E V+ LLE GA D++ +
Sbjct: 95 LRALLDSAAPGTLDL----EARNYDGLTALHVAVNTECQETVQLLLERGA-DIDAVDIKS 149
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
G++PL A E S MV +LL H A+ N + G + L
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA---- 344
LH AV VV+ L+ GA+ + G+T H+A E SP + LLD A
Sbjct: 50 LHLAVITTLPSVVRLLVTAGASPMALDR--HGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 345 DPNVRTVDGVTPLDI 359
D R DG+T L +
Sbjct: 108 DLEARNYDGLTALHV 122
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALAL---HYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N +A L H A E+V+ LL+ GA D
Sbjct: 16 KKLLEAARA--GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN G TPLH+AA + ++V VLL H AD N G TPL
Sbjct: 73 VN-AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPL 117
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA M ++V VLL H AD N
Sbjct: 84 LHLAALIGHLEIVEVLLKHGA-DVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N + LH A + E+V+ LL+ GA D
Sbjct: 16 RKLLEAARA--GQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
V+ + G TPLH+AA ++V VLL + AD N DG+TPL
Sbjct: 73 VD-ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL 117
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA+ ++V VLL H AD N
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGA-DVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N ++ LH A E+V+ LL+ GA D
Sbjct: 16 KKLLEAARA--GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN A G TPLH+AA ++V VLL + AD N G TPL
Sbjct: 73 VN-AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPL 117
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA+ ++V VLL + AD N
Sbjct: 84 LHLAALYGHLEIVEVLLKNGA-DVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A E+V+ LL+ GA DVN G TPLH+AA M ++V VLL H AD N
Sbjct: 84 LHLAALIGHLEIVEVLLKHGA-DVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 349 RTVDGVTPLDI 359
+ G T DI
Sbjct: 142 QDKFGKTAFDI 152
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 309 AADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
ADVN +G TPLH+AA ++V VLL H AD N + G TPL
Sbjct: 37 GADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPL 84
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEALAL---HYAVENCSREVVKALLELGAADVNYPA 316
+ A D E+ LM G +N + L + A + E+V+ LL+ GA DVN
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVN-AV 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA + ++ VLL H AD N + G T DI
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D ALH+A E+V+ LL+LG VN AG +PLHIAA ++V LL
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVP-VN-DKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 344 ADPNVRTVDGVTPL 357
A N +G TPL
Sbjct: 98 AQVNAVNQNGCTPL 111
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 270 ELVKLMVMGEG-----LNLDEALALHYAVENCSREVVKALLELGA---ADVNYPAGPAGK 321
E+VK + +G+G +N + LHYA E+ LLE GA A +Y A
Sbjct: 88 EIVKAL-LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA----- 141
Query: 322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
T +H AA + M+ +LL + A N++ +G TPL
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL 177
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 269 VELVKLMVM-GEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
+E+V++++ G +N ++L LH A E+V+ LL+ GA DVN + G TPL
Sbjct: 60 LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA-DVN-ASDSHGFTPL 117
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
H+AA+ ++V VLL + AD N + G T DI
Sbjct: 118 HLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
+K+ RA D E+ LM G +N + LH A E+V+ LL+ GA D
Sbjct: 16 KKLLEAARA--GQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
VN G TPLH+AA ++V VLL + AD N G TPL
Sbjct: 73 VNAKD-SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL 117
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D ALH+A E+V+ LL+LG VN AG +PLHIAA ++V LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VN-DKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 344 ADPNVRTVDGVTPL 357
A N +G TPL
Sbjct: 97 AQVNAVNQNGCTPL 110
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 270 ELVKLMVMGEG-----LNLDEALALHYAVENCSREVVKALLELGA---ADVNYPAGPAGK 321
E+VK + +G+G +N + LHYA E+ LLE GA A +Y A
Sbjct: 87 EIVKAL-LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA----- 140
Query: 322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
T +H AA + M+ +LL + A N++ +G TPL
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL 176
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 253 EDQKIRRMRRALDSSDVELVKLMVMGEGL----NLDEALALHYAVENCSREVVKALLELG 308
EDQ+ M A +++ +E VK ++ L + + + LH A + EVV+ LL G
Sbjct: 42 EDQRTPLMEAA-ENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 309 AADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVR 349
DVN G TP+ A E D+V +LL +D N+R
Sbjct: 101 QMDVNCQ-DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 260 MRRALDSSDVELVKLMV-MGEGLNL---DEALALHYAVENCSREVVKALL----ELGAAD 311
M A + V+LVKL++ G +N+ +E + LH+A + ++ + LL +L A +
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
++ G +PLHIAA D V + L +D ++ +G TPL
Sbjct: 175 IH------GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A EV + L++ GA VN A TPLH AA ++ +LL H ADP
Sbjct: 81 LHNACSYGHYEVAELLVKHGAV-VNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 138
Query: 349 RTVDGVTPLDILRTLTSDF--LFKG 371
+ DG TPLD+++ +D L +G
Sbjct: 139 KNRDGNTPLDLVKDGDTDIQDLLRG 163
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
TPLH AA +V LL H AD + + G+ PL
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPL 81
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D ALH+A E+V+ LL+LG VN AG +PLHIAA ++V LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VN-DKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 344 ADPNVRTVDGVTPL 357
A N +G TPL
Sbjct: 97 AHVNAVNQNGCTPL 110
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 270 ELVK-LMVMG---EGLNLDEALALHYAVENCSREVVKALLELGA---ADVNYPAGPAGKT 322
E+VK L+V G +N + LHYA E+ LLE GA A +Y A T
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-----T 141
Query: 323 PLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL----DILRTLTSDFLFKGAVPGLTH 378
+H AA + MV +LL + A N++ +G TPL D R + FL +
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS--IY 199
Query: 379 IEPNKLRLCLELVQSA-ALVLSR 400
IE + + L++ + L+L R
Sbjct: 200 IENKEEKTPLQVAKGGLGLILKR 222
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A EV + L++ GA VN A TPLH AA ++ +LL H ADP
Sbjct: 79 LHNACSYGHYEVAELLVKHGAV-VNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136
Query: 349 RTVDGVTPLDILRTLTSDF--LFKG 371
+ DG TPLD+++ +D L +G
Sbjct: 137 KNRDGNTPLDLVKDGDTDIQDLLRG 161
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
TPLH AA +V LL H AD + + G+ PL
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPL 79
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D ALH+A E+V+ LL+LG VN AG +PLHIAA ++V LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VN-DKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 344 ADPNVRTVDGVTPL 357
A N +G TPL
Sbjct: 97 AHVNAVNQNGCTPL 110
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 270 ELVK-LMVMG---EGLNLDEALALHYAVENCSREVVKALLELGA---ADVNYPAGPAGKT 322
E+VK L+V G +N + LHYA E+ LLE GA A +Y A T
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-----T 141
Query: 323 PLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL----DILRTLTSDFLFKGAVPGLTH 378
+H AA + MV +LL + A N++ +G TPL D R + FL +
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS--IY 199
Query: 379 IEPNKLRLCLELVQSA-ALVLSR 400
IE + + L++ + L+L R
Sbjct: 200 IENKEEKTPLQVAKGGLGLILKR 222
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A EV + L++ GA VN A TPLH AA ++ +LL H ADP
Sbjct: 83 LHNACSYGHYEVAELLVKHGAV-VNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 140
Query: 349 RTVDGVTPLDILRTLTSDF--LFKG 371
+ DG TPLD+++ +D L +G
Sbjct: 141 KNRDGNTPLDLVKDGDTDIQDLLRG 165
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
TPLH AA +V LL H AD + + G+ PL
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPL 83
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 270 ELVKLMVMGEGLN---LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI 326
E+++L+ G +N +D ALH A + + ++VK L+E GA ++N P G PLH
Sbjct: 55 EVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNE-GWIPLHA 112
Query: 327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
AA D+ L+ A +G TPLDI
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 318 PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
+G T LH+AA +++ +L+ D N++ DG TPL
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 257 IRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPA 316
+R R+ L+S + V+ G ALH A EV+K L++ DVN
Sbjct: 178 LRDARQWLNSGHINDVRHAKSG-------GTALHVAAAKGYTEVLKLLIQ-ARYDVNIK- 228
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH AA + +L+++ D G T D+
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV 338
E +++ + AL +AV+N + + LL G+ +VN +GKTPL + +M
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVN-TKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 339 LLDHHADPNVRTVDGVTPL 357
LL+H A+ N R ++G TPL
Sbjct: 120 LLEHGANVNDRNLEGETPL 138
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
AL + S + V+ L E GA D+++ G T LH+AA V P++V L++ AD
Sbjct: 79 ALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 348 VRTVDGVTPLDILRTL 363
V G+T L++ R +
Sbjct: 138 VEDERGLTALELAREI 153
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
AL + S + V+ L E GA D+++ G T LH+AA V P++V L++ AD
Sbjct: 80 ALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
Query: 348 VRTVDGVTPLDILRTL 363
V G+T L++ R +
Sbjct: 139 VEDERGLTALELAREI 154
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 287 LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADP 346
LA A+E +++ A ++ AAD +GKT LH AA + + + V +LL HHA+
Sbjct: 124 LAARLAIEGMVEDLITADADINAAD------NSGKTALHWAAAVNNTEAVNILLMHHANR 177
Query: 347 NVRTVDGVTPL 357
+ + TPL
Sbjct: 178 DAQDDKDETPL 188
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 276 VMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDM 335
V G GL+ E + + E+ + +V+ LL GA ++N G+T LH+AA D
Sbjct: 11 VRGGGLDTGEDIENN---EDSTAQVISDLLAQGA-ELNATMDKTGETSLHLAARFARADA 66
Query: 336 VAVLLDHHADPNVRTVDGVTPL 357
LLD AD N + G TPL
Sbjct: 67 AKRLLDAGADANSQDNTGRTPL 88
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 299 EVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
E V L LG ++N A AG+T L +A D+V LL AD NV+ DG T L
Sbjct: 164 ETVLQLFRLG--NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL 220
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 286 ALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA- 344
A ALH A + K LLE +AD N G+TPLH A + + +L+ + A
Sbjct: 58 ATALHLAAAYSRSDAAKRLLE-ASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 345 DPNVRTVDGVTPL 357
D + R DG TPL
Sbjct: 116 DLDARMHDGTTPL 128
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
G T LH+AA D LL+ AD N++ G TPL
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPL 94
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
ALH A + K LLE +AD N G+TPLH A + + +L+ + A D
Sbjct: 28 ALHLAARYSRSDAAKRLLE-ASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 347 NVRTVDGVTPL 357
+ R DG TPL
Sbjct: 86 DARMHDGTTPL 96
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
G+T LH+AA D LL+ AD N++ G TPL
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
ALH A + K LLE +AD N G+TPLH A + + +L+ + A D
Sbjct: 61 ALHLAARYSRSDAAKRLLE-ASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 347 NVRTVDGVTPL 357
+ R DG TPL
Sbjct: 119 DARMHDGTTPL 129
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
G+T LH+AA D LL+ AD N++ G TPL
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 95
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 271 LVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKT-PLHI 326
L K+ G G+N+ D + LH A + +++ LL+ GA N A A + PLH+
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGA---NAGARNADQAVPLHL 125
Query: 327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
A + +V LLD +A PN + + G TPL
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL 156
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
N D+A+ LH A + +VVK LL+ A +G TPL A ++VA+LL
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKP--NKKDLSGNTPLIYACSGGHHELVALLLQ 173
Query: 342 HHADPNVRTVDGVTPL 357
H A N G T L
Sbjct: 174 HGASINASNNKGNTAL 189
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
ALH A + K LLE +AD N G+TPLH A + + +L+ + A D
Sbjct: 60 ALHLAARYSRSDAAKRLLE-ASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 347 NVRTVDGVTPL 357
+ R DG TPL
Sbjct: 118 DARMHDGTTPL 128
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
G+T LH+AA D LL+ AD N++ G TPL
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 94
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 263 ALDSSDVELVKLMVMGEGLNLDEAL-----ALHYAVENCSREVVKALLELGAADVNYPAG 317
AL + D++ VK V +G +++ L LHYA + E+++ LL L AD+N P
Sbjct: 9 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAP-D 65
Query: 318 PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLD 358
TPL A V +LL AD V+ DG+T L+
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH+A N ++VK + GA V+ G TPLH A MV L+ + ADP++
Sbjct: 46 LHWAAINNRIDLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Query: 349 RTVDG 353
+DG
Sbjct: 105 --IDG 107
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 26 DVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGV 85
D TF V+G AH+ +LAA S +F+ F LD + A+ + Q
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQ------------ 74
Query: 86 IPVNSVGYEVFLLLLQFLYSGQVSIVPQ 113
+L+F+Y+ ++S+ P+
Sbjct: 75 -------------VLEFMYTAKLSLSPE 89
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA-----------GKTPLHIAAEMVSPDMV 336
ALH AV N + +V+ALL GA+ G G+ PL AA + S ++V
Sbjct: 78 ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137
Query: 337 AVLLDHHADPNVRTVDGVTPLDIL 360
+L++H AD + G T L IL
Sbjct: 138 RLLIEHGADIRAQDSLGNTVLHIL 161
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 26 DVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGV 85
D TF V+G AH+ +LAA S +F+ F LD + A+ + Q
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQ------------ 76
Query: 86 IPVNSVGYEVFLLLLQFLYSGQVSIVPQ 113
+L+F+Y+ ++S+ P+
Sbjct: 77 -------------VLEFMYTAKLSLSPE 91
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
ALH A + K LLE +AD G+TPLH A + + +LL + A D
Sbjct: 25 ALHLAARYSRSDAAKRLLE-ASADAXIQ-DNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 347 NVRTVDGVTPL 357
+ R DG TPL
Sbjct: 83 DARMHDGTTPL 93
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH AV ++ V + LL A D++ G TPL +AA + M+ L++ HAD N
Sbjct: 59 LHAAVSADAQGVFQILLRNRATDLDARMHD-GTTPLILAARLALEGMLEDLINSHADVNA 117
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 20/84 (23%)
Query: 24 FSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPT 83
F+D V G+ AH+ ILAARS F F ++ + +R
Sbjct: 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMF-----EHEMEESKKNR------------- 215
Query: 84 GVIPVNSVGYEVFLLLLQFLYSGQ 107
+ +N V EVF ++ F+Y+G+
Sbjct: 216 --VEINDVEPEVFKEMMCFIYTGK 237
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
+L ADVN G TPLH+AA ++V VLL AD N + G T DI
Sbjct: 20 ILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 23/87 (26%)
Query: 24 FSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPT 83
+ DV+ V+G AHR +LAA S +FR F N + P
Sbjct: 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRDLF-----------------NNSRSAVVELPA 75
Query: 84 GVIPVNSVGYEVFLLLLQFLYSGQVSI 110
V P + F +L F Y+G++S+
Sbjct: 76 AVQP------QSFQQILSFCYTGRLSM 96
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 20/84 (23%)
Query: 24 FSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPT 83
F+D V G+ AH+ ILAARS F F ++ + +R+
Sbjct: 25 FTDCCLCVAGQEFQAHKAILAARSPVFSAMF-----EHEMEESKKNRVE----------- 68
Query: 84 GVIPVNSVGYEVFLLLLQFLYSGQ 107
+N V EVF ++ F+Y+G+
Sbjct: 69 ----INDVEPEVFKEMMCFIYTGK 88
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 263 ALDSSDVELVKLMVMGEGLNLDEAL-----ALHYAVENCSREVVKALLELGAADVNYPAG 317
AL + D++ VK V +G +++ L LHYA + E+++ LL L AD+N P
Sbjct: 14 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAP-D 70
Query: 318 PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLD 358
TPL A V +LL AD V+ DG+T +
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 24 FSDVTFSVEGRLVHAHRCILAARSLFFRKFF 54
F DVT VE R AH+ IL+A S +F + F
Sbjct: 33 FCDVTVIVEDRKFRAHKNILSASSTYFHQLF 63
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 24 FSDVTFSVEGRLVHAHRCILAARSLFFRKFF 54
F DVT VE R AH+ IL+A S +F + F
Sbjct: 31 FCDVTVIVEDRKFRAHKNILSASSTYFHQLF 61
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G T L+IAA + + +V LLD+ ADP + G+ P+D
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH+A VV+ L+ GA +N TPLH+AA D+V LL + AD N
Sbjct: 43 LHWACREGRSAVVEMLIMRGAR-INV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 349 RTVDGVTPL 357
G PL
Sbjct: 101 VNEHGNVPL 109
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH+A VV+ L+ GA +N TPLH+AA D+V LL + AD N
Sbjct: 38 LHWACREGRSAVVEMLIMRGAR-INV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 349 RTVDGVTPL 357
G PL
Sbjct: 96 VNEHGNVPL 104
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 26 DVTFSVEGRLVHAHRCILAARSLFFRKFF 54
DV VEGR HR +LAA S +F+K F
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLF 65
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
AL A ++VK LL+ G DVN G TPL A V +LL+ ADP
Sbjct: 88 ALSLACSKGYTDIVKMLLDCGV-DVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 145
Query: 348 VRTVDGVTPLDI 359
+ T G +D+
Sbjct: 146 IETDSGYNSMDL 157
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 26 DVTFSVEGRLVHAHRCILAARSLFFRKFF 54
DV VEGR HR +LAA S +F+K F
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLF 55
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
AL A ++VK LL+ G DVN G TPL A V +LL+ ADP
Sbjct: 70 ALSLACSKGYTDIVKMLLDCGV-DVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 127
Query: 348 VRTVDGVTPLDI 359
+ T G +D+
Sbjct: 128 IETDSGYNSMDL 139
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
AL A ++VK LL+ G DVN G TPL A V +LL+ ADP
Sbjct: 72 ALSLACSKGYTDIVKMLLDCGV-DVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129
Query: 348 VRTVDGVTPLDI 359
+ T G +D+
Sbjct: 130 IETDSGYNSMDL 141
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA ++V +LL+ AD N + G T DI
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVL 339
LH A N EVVK LLE G ADVN GKT I+ + + D+ +L
Sbjct: 43 LHLAARNGHLEVVKLLLEAG-ADVN-AQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 262 RALDSSDVELVKLMVMGEGLNLDE----ALALHYAVENC--SREVVKALLELGAADVNYP 315
+A +D+ VK + E +N + ALH AV + R+ V LL A+VN
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN-E 242
Query: 316 AGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
TPLH+AAE D++ VL H A N G T L
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 261 RRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAG 320
+ ALD +D K ++ GE DE L A + + E + ALL +VN A
Sbjct: 5 KSALDLADPS-AKAVLTGE-YKKDELLE---AARSGNEEKLMALLT--PLNVNCHASDGR 57
Query: 321 K-TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
K TPLH+AA +V +LL H AD + + G+ PL
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL 95
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A EV + LL+ GA VN TPLH AA ++ ++LL H ADP +
Sbjct: 95 LHNACSYGHYEVTELLLKHGAC-VN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Query: 349 RTVDGVTPLDI 359
G + +D+
Sbjct: 153 VNCHGKSAVDM 163
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
+TPLH+AA ++V VLL H AD N + + +T L
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL 104
>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
Length = 481
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 257 IRRMRRALDSSDVELVKLM-VMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYP 315
+ ++R+ LD + + V+L +GE + Y + S + ++EL A YP
Sbjct: 369 LEKIRKQLDKNGFDKVELYYTLGE---------MSYR-SDMSAPAILNVIEL--AKKFYP 416
Query: 316 AG------PAGKTPLHIAAEMVSPDMVAVLL------DHHADPNVRTVDGVTPLDILRTL 363
G AG P+H + + MVA L DH D NVR D T ++++ L
Sbjct: 417 QGVSVLPTTAGTGPMHTVFDALEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEEL 476
Query: 364 TSDF 367
+
Sbjct: 477 IRSY 480
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
LH A + +VV+ LL+ A VN G +PLH AA+ D+V +LL + A N
Sbjct: 47 LHEACNHGHLKVVELLLQHKAL-VN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Query: 349 RTVDGVTPLD 358
+ G+ P+D
Sbjct: 105 VNIFGLRPVD 114
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
G+T LHIA+ V LL + +DPNV+ G TPL
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL 47
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 26 DVTFSVEGRLVHAHRCILAARSLFFRKFFCG 56
DVT VEG+ AHR +LAA S +F G
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVG 61
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGP--AGKTPLHIAAEMVSPDMVAVLLD 341
D + LH++V + E+ LL +VN P +G TP HIA + + ++V L D
Sbjct: 35 DGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 342 HHADPNVRTV--DGVTPL 357
P++ + GVT L
Sbjct: 94 RPLKPDLNKITNQGVTCL 111
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGP--AGKTPLHIAAEMVSPDMVAVLLD 341
D + LH++V + E+ LL +VN P +G TP HIA + + ++V L D
Sbjct: 35 DGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 342 HHADPNVRTV--DGVTPL 357
P++ + GVT L
Sbjct: 94 RPLKPDLNKITNQGVTCL 111
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGP--AGKTPLHIAAEMVSPDMVAVLLD 341
D + LH++V + E+ LL +VN P +G TP HIA + + ++V L D
Sbjct: 35 DGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 342 HHADPNVRTV--DGVTPL 357
P++ + GVT L
Sbjct: 94 RPLKPDLNKITNQGVTCL 111
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 24/87 (27%)
Query: 24 FSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPT 83
+ D T V G + AH +LA S FF++ + G P
Sbjct: 25 YCDATLDVGGLVFKAHWSVLACCSHFFQRIY-----------------GDGTGGSVVLPA 67
Query: 84 GVIPVNSVGYEVFLLLLQFLYSGQVSI 110
G E+F LLL F Y+G +++
Sbjct: 68 GFA-------EIFGLLLDFFYTGHLAL 87
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 269 VELVKLMVMGEGLNLDEALALHYAVENCSRE---VVKALLELGAADVNYPAGPAGKTPLH 325
V+L + + + G DE ALH AV + R +V L++ + +++ G G T LH
Sbjct: 154 VDLTEKIPLANGHEPDET-ALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGK-GSTALH 210
Query: 326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL 363
+ + + +LL A + G TPLDI + L
Sbjct: 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D A L A S + LL+ GA +VN A AG+ PLH A + + + L
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGA-NVNQ-ADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 344 ADPNVRTVDGVTPLDI-LRTLTSDFL 368
AD R +G PL I + T +D +
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIV 317
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D A L A S + LL+ GA +VN A AG+ PLH A + + + L
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGA-NVNQ-ADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 344 ADPNVRTVDGVTPLDI-LRTLTSDFL 368
AD R +G PL I + T +D +
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIV 317
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
D A L A S + LL+ GA +VN A AG+ PLH A + + + L
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGA-NVNQ-ADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 344 ADPNVRTVDGVTPLDI-LRTLTSDFL 368
AD R +G PL I + T +D +
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIV 317
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
G TPLH+AA ++V +LL+ AD + G T DI
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 26 DVTFSVEGRLVHAHRCILAARSLFF 50
DVT VEG+ AHR +LAA S +F
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYF 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,774,154
Number of Sequences: 62578
Number of extensions: 489365
Number of successful extensions: 10765
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 10379
Number of HSP's gapped (non-prelim): 324
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)