BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010592
         (506 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
 pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
          Length = 260

 Score = 36.6 bits (83), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 106 ALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165
            LD G G   W  +L  R    +   P    +  ++ A E+GV  V+       +P+ S 
Sbjct: 58  VLDLGGGTGKWSLFLQERGFEVVLVDP---SKEXLEVAREKGVKNVVEAKAE-DLPFPSG 113

Query: 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWV 201
           AF+       ++ +  N  +   E+ RVL P G  +
Sbjct: 114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149


>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
 pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
          Length = 211

 Score = 34.3 bits (77), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 405 WCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453
           W EA      ++D++    LF+  +   ++E +LLE  R+LRP GA+++
Sbjct: 85  WGEALPFPGESFDVVL---LFTTLEFVEDVERVLLEARRVLRPGGALVV 130


>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
 pdb|3BUS|B Chain B, Crystal Structure Of Rebm
          Length = 273

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 13/135 (9%)

Query: 76  GGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS-RNVIAMSFAPRD 134
           G         D+  D+  +++ +++G     LD GCG+      L + R+V     +   
Sbjct: 37  GADVSVDDATDRLTDEXIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTGIS--- 91

Query: 135 SHEAQVQFALERGVPAVIGVLGTIK------MPYASRAFDMAHCSRCLIPWGANDGRYMI 188
               QV  A  R   A +    T        +P+   +FD       L     + GR + 
Sbjct: 92  ISRPQVNQANARATAAGLANRVTFSYADAXDLPFEDASFDAVWALESL-HHXPDRGRALR 150

Query: 189 EVDRVLRPGGYWVLS 203
           E  RVLRPGG   ++
Sbjct: 151 EXARVLRPGGTVAIA 165


>pdb|3HDP|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase-I From
           Clostridium Acetobutylicum
          Length = 133

 Score = 28.9 bits (63), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 433 NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPL 484
           NI+  L +  R+   E + ++RDEV ++     I GG R +    D ED P+
Sbjct: 17  NIDSALKKFKRLGYVEESEVVRDEVRKVYIQFVINGGYRVELVAPDGEDSPI 68


>pdb|2QH0|A Chain A, Crystal Structure Of A Glyoxalase From Clostridium
           Acetobutylicum
          Length = 138

 Score = 28.9 bits (63), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 433 NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPL 484
           NI+  L +  R+   E + ++RDEV ++     I GG R +    D ED P+
Sbjct: 14  NIDSALKKFKRLGYVEESEVVRDEVRKVYIQFVINGGYRVELVAPDGEDSPI 65


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,894,105
Number of Sequences: 62578
Number of extensions: 755320
Number of successful extensions: 1417
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1413
Number of HSP's gapped (non-prelim): 9
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)