Query 010592
Match_columns 506
No_of_seqs 601 out of 4186
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3E-127 7E-132 976.5 33.8 481 4-494 17-506 (506)
2 PLN02336 phosphoethanolamine N 99.9 1.9E-25 4.1E-30 239.3 25.0 350 90-475 27-410 (475)
3 PF03141 Methyltransf_29: Puta 99.9 1.9E-23 4.1E-28 214.9 6.9 160 327-496 87-262 (506)
4 PRK11088 rrmA 23S rRNA methylt 99.7 1.7E-17 3.7E-22 165.1 14.6 163 11-209 17-186 (272)
5 COG2226 UbiE Methylase involve 99.7 1E-16 2.2E-21 154.0 10.6 101 352-456 51-157 (238)
6 COG2226 UbiE Methylase involve 99.7 3.2E-16 7E-21 150.6 11.0 112 90-204 41-156 (238)
7 PRK01544 bifunctional N5-gluta 99.7 2.8E-14 6E-19 153.3 25.4 297 103-474 139-483 (506)
8 PF01209 Ubie_methyltran: ubiE 99.6 3.5E-16 7.5E-21 151.6 8.5 117 331-456 32-154 (233)
9 PF01209 Ubie_methyltran: ubiE 99.6 1.5E-15 3.4E-20 147.0 9.4 102 102-204 47-153 (233)
10 PF08241 Methyltransf_11: Meth 99.6 1.3E-15 2.9E-20 125.5 7.1 92 357-453 1-95 (95)
11 COG2227 UbiG 2-polyprenyl-3-me 99.6 5.6E-15 1.2E-19 139.8 9.6 153 49-209 11-166 (243)
12 PLN02233 ubiquinone biosynthes 99.6 4.7E-14 1E-18 139.4 16.6 102 351-455 72-182 (261)
13 PF08241 Methyltransf_11: Meth 99.6 6.6E-15 1.4E-19 121.3 8.3 90 107-202 1-95 (95)
14 PLN02233 ubiquinone biosynthes 99.5 1.5E-13 3.2E-18 135.9 13.5 102 102-204 73-182 (261)
15 PLN02244 tocopherol O-methyltr 99.5 1.8E-13 3.9E-18 140.4 13.8 123 81-205 94-224 (340)
16 PRK00107 gidB 16S rRNA methylt 99.5 7.7E-13 1.7E-17 123.9 16.2 153 332-495 27-187 (187)
17 PTZ00098 phosphoethanolamine N 99.5 1.2E-13 2.7E-18 136.6 10.7 125 77-205 29-157 (263)
18 PLN02396 hexaprenyldihydroxybe 99.5 4.3E-13 9.4E-18 135.7 14.5 104 102-207 131-238 (322)
19 PRK10258 biotin biosynthesis p 99.5 4.5E-13 9.7E-18 131.7 13.2 113 87-207 29-143 (251)
20 TIGR02752 MenG_heptapren 2-hep 99.5 1.2E-12 2.6E-17 127.0 15.9 143 347-494 40-231 (231)
21 PTZ00098 phosphoethanolamine N 99.5 2.7E-13 5.9E-18 134.2 11.1 148 325-475 8-198 (263)
22 PRK10258 biotin biosynthesis p 99.5 8E-13 1.7E-17 129.9 13.8 105 345-455 35-140 (251)
23 PLN02396 hexaprenyldihydroxybe 99.4 6.3E-13 1.4E-17 134.5 12.6 118 353-476 132-286 (322)
24 PRK15001 SAM-dependent 23S rib 99.4 2.4E-11 5.2E-16 125.2 24.1 140 346-494 222-373 (378)
25 PRK11207 tellurite resistance 99.4 5.5E-13 1.2E-17 126.3 10.9 119 352-477 30-168 (197)
26 PF12847 Methyltransf_18: Meth 99.4 1.9E-13 4.1E-18 116.8 6.8 100 353-455 2-111 (112)
27 TIGR00452 methyltransferase, p 99.4 1.5E-12 3.2E-17 131.2 13.9 139 332-476 102-270 (314)
28 PRK14103 trans-aconitate 2-met 99.4 7.3E-13 1.6E-17 130.6 10.8 106 343-454 20-125 (255)
29 PF13489 Methyltransf_23: Meth 99.4 3.2E-13 6.9E-18 122.7 7.4 97 351-457 21-117 (161)
30 KOG1540 Ubiquinone biosynthesi 99.4 1.1E-12 2.5E-17 124.1 11.1 125 347-474 95-234 (296)
31 PRK11207 tellurite resistance 99.4 1.2E-12 2.6E-17 124.0 11.3 99 103-203 31-133 (197)
32 PRK05785 hypothetical protein; 99.4 1.8E-12 3.9E-17 125.4 12.7 90 353-449 52-141 (226)
33 PF02353 CMAS: Mycolic acid cy 99.4 8.1E-13 1.8E-17 131.0 10.0 122 74-203 36-165 (273)
34 TIGR02752 MenG_heptapren 2-hep 99.4 2.1E-12 4.5E-17 125.3 12.1 113 90-205 35-152 (231)
35 PLN02244 tocopherol O-methyltr 99.4 1.6E-12 3.5E-17 133.3 11.6 100 351-455 117-223 (340)
36 KOG1540 Ubiquinone biosynthesi 99.4 1.6E-12 3.5E-17 123.1 10.5 104 99-204 97-214 (296)
37 TIGR00477 tehB tellurite resis 99.4 1.9E-12 4E-17 122.5 11.1 99 103-203 31-132 (195)
38 PF13489 Methyltransf_23: Meth 99.4 6.6E-13 1.4E-17 120.6 7.8 95 102-207 22-118 (161)
39 PF12847 Methyltransf_18: Meth 99.4 1.4E-12 3.1E-17 111.4 9.4 101 103-204 2-111 (112)
40 PRK14103 trans-aconitate 2-met 99.4 2.3E-12 4.9E-17 127.1 11.6 106 90-206 19-128 (255)
41 PRK15068 tRNA mo(5)U34 methylt 99.4 5.2E-12 1.1E-16 128.4 14.0 111 90-204 112-226 (322)
42 PRK12335 tellurite resistance 99.4 2.9E-12 6.3E-17 128.5 11.1 116 354-477 122-257 (287)
43 TIGR00477 tehB tellurite resis 99.4 3.8E-12 8.3E-17 120.3 11.2 118 353-478 31-168 (195)
44 PRK05785 hypothetical protein; 99.4 1.9E-12 4.1E-17 125.2 9.2 87 103-198 52-141 (226)
45 KOG4300 Predicted methyltransf 99.4 2.6E-12 5.6E-17 118.0 9.4 102 105-207 79-185 (252)
46 PF03848 TehB: Tellurite resis 99.4 5.6E-12 1.2E-16 117.7 11.7 100 103-204 31-133 (192)
47 COG4976 Predicted methyltransf 99.4 1E-12 2.2E-17 122.4 6.7 165 325-495 89-286 (287)
48 PF05401 NodS: Nodulation prot 99.4 7.9E-12 1.7E-16 115.4 12.4 143 347-493 38-193 (201)
49 PRK01683 trans-aconitate 2-met 99.3 7.3E-12 1.6E-16 123.6 12.8 108 90-206 21-132 (258)
50 PRK11036 putative S-adenosyl-L 99.3 4E-12 8.6E-17 125.4 10.4 111 91-206 36-151 (255)
51 PF08242 Methyltransf_12: Meth 99.3 4.7E-13 1E-17 112.1 3.0 93 107-200 1-99 (99)
52 PRK11036 putative S-adenosyl-L 99.3 4.1E-12 8.8E-17 125.3 10.2 96 353-454 45-148 (255)
53 PF13847 Methyltransf_31: Meth 99.3 4.7E-12 1E-16 114.7 9.8 102 102-206 3-112 (152)
54 COG2230 Cfa Cyclopropane fatty 99.3 5.3E-12 1.2E-16 123.7 10.7 125 74-204 46-176 (283)
55 PRK15068 tRNA mo(5)U34 methylt 99.3 5.4E-12 1.2E-16 128.3 10.6 129 342-476 112-271 (322)
56 COG4106 Tam Trans-aconitate me 99.3 2.1E-11 4.5E-16 113.0 13.2 190 91-307 21-214 (257)
57 TIGR00452 methyltransferase, p 99.3 2.2E-11 4.7E-16 122.8 13.9 111 90-204 111-225 (314)
58 PF13649 Methyltransf_25: Meth 99.3 1.1E-12 2.4E-17 110.3 3.9 92 106-198 1-101 (101)
59 PF02353 CMAS: Mycolic acid cy 99.3 5.8E-12 1.3E-16 124.9 9.6 115 336-453 46-164 (273)
60 PLN02336 phosphoethanolamine N 99.3 1.9E-11 4.1E-16 131.3 13.9 112 90-205 256-370 (475)
61 PRK15451 tRNA cmo(5)U34 methyl 99.3 5.4E-12 1.2E-16 123.8 8.9 101 102-204 56-164 (247)
62 PRK01683 trans-aconitate 2-met 99.3 1.3E-11 2.8E-16 121.9 11.4 106 344-455 23-130 (258)
63 PF08242 Methyltransf_12: Meth 99.3 8.7E-13 1.9E-17 110.5 2.3 91 357-451 1-99 (99)
64 PRK11705 cyclopropane fatty ac 99.3 1E-11 2.2E-16 129.1 10.6 115 338-455 153-267 (383)
65 PRK12335 tellurite resistance 99.3 1.4E-11 3E-16 123.6 11.3 98 104-203 122-222 (287)
66 TIGR02072 BioC biotin biosynth 99.3 1.6E-11 3.5E-16 119.0 11.1 99 103-207 35-138 (240)
67 PF07021 MetW: Methionine bios 99.3 1.2E-11 2.6E-16 114.1 9.5 108 90-209 5-114 (193)
68 PLN02490 MPBQ/MSBQ methyltrans 99.3 3.8E-11 8.2E-16 122.1 13.5 122 353-478 114-255 (340)
69 PRK15451 tRNA cmo(5)U34 methyl 99.3 5.5E-12 1.2E-16 123.7 7.2 103 353-456 57-165 (247)
70 PF13847 Methyltransf_31: Meth 99.3 5.2E-12 1.1E-16 114.5 6.5 101 353-457 4-112 (152)
71 TIGR00138 gidB 16S rRNA methyl 99.3 6E-11 1.3E-15 110.8 13.8 140 332-483 25-173 (181)
72 TIGR03587 Pse_Me-ase pseudamin 99.3 2.5E-11 5.5E-16 115.5 11.4 94 103-204 44-142 (204)
73 PRK11873 arsM arsenite S-adeno 99.3 2.6E-11 5.5E-16 120.7 11.8 101 102-204 77-183 (272)
74 smart00828 PKS_MT Methyltransf 99.3 1.9E-11 4E-16 118.0 10.4 118 355-476 2-141 (224)
75 COG2227 UbiG 2-polyprenyl-3-me 99.3 4.9E-12 1.1E-16 119.9 6.1 99 353-457 60-163 (243)
76 PRK08317 hypothetical protein; 99.3 4.7E-11 1E-15 115.6 13.0 117 86-206 5-126 (241)
77 PRK00107 gidB 16S rRNA methylt 99.3 1E-10 2.2E-15 109.5 14.7 115 103-242 46-165 (187)
78 PRK11088 rrmA 23S rRNA methylt 99.3 5.4E-11 1.2E-15 118.4 13.6 105 352-466 85-193 (272)
79 TIGR00740 methyltransferase, p 99.3 2.2E-11 4.7E-16 118.9 10.6 102 102-205 53-162 (239)
80 TIGR03840 TMPT_Se_Te thiopurin 99.3 2E-11 4.4E-16 116.8 9.8 101 103-203 35-151 (213)
81 TIGR00740 methyltransferase, p 99.2 1.2E-11 2.5E-16 120.8 7.7 104 352-456 53-162 (239)
82 KOG1270 Methyltransferases [Co 99.2 2.8E-11 6E-16 115.6 8.9 140 61-207 46-198 (282)
83 TIGR00537 hemK_rel_arch HemK-r 99.2 1.3E-10 2.7E-15 108.4 13.2 124 354-480 21-166 (179)
84 PRK08317 hypothetical protein; 99.2 5.7E-11 1.2E-15 115.0 11.2 107 346-455 13-124 (241)
85 PLN02490 MPBQ/MSBQ methyltrans 99.2 6.7E-11 1.4E-15 120.3 11.9 100 102-205 113-216 (340)
86 PRK00121 trmB tRNA (guanine-N( 99.2 8.9E-11 1.9E-15 111.6 11.6 105 102-207 40-159 (202)
87 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2.9E-10 6.2E-15 109.1 15.0 103 350-455 37-143 (223)
88 PRK06202 hypothetical protein; 99.2 1.4E-10 2.9E-15 112.8 12.7 104 349-455 57-166 (232)
89 PF03848 TehB: Tellurite resis 99.2 6.8E-11 1.5E-15 110.4 10.1 120 350-477 28-167 (192)
90 COG2230 Cfa Cyclopropane fatty 99.2 4.8E-11 1E-15 117.0 9.2 129 323-454 42-175 (283)
91 PRK06922 hypothetical protein; 99.2 6.6E-11 1.4E-15 127.5 11.1 101 103-204 419-537 (677)
92 PRK00517 prmA ribosomal protei 99.2 1.4E-10 3E-15 114.0 12.5 130 353-495 120-250 (250)
93 smart00138 MeTrc Methyltransfe 99.2 5.9E-11 1.3E-15 117.5 9.6 133 324-457 70-244 (264)
94 PRK11873 arsM arsenite S-adeno 99.2 6.5E-11 1.4E-15 117.8 9.9 121 352-475 77-226 (272)
95 PRK08287 cobalt-precorrin-6Y C 99.2 3.2E-10 7E-15 106.4 14.1 118 348-473 27-150 (187)
96 PF13649 Methyltransf_25: Meth 99.2 9.8E-12 2.1E-16 104.6 3.3 93 356-449 1-101 (101)
97 PRK00377 cbiT cobalt-precorrin 99.2 4.4E-10 9.6E-15 106.5 15.0 150 321-478 9-169 (198)
98 PRK11783 rlmL 23S rRNA m(2)G24 99.2 5.4E-10 1.2E-14 125.0 18.1 126 353-480 539-681 (702)
99 PRK04266 fibrillarin; Provisio 99.2 3.2E-10 7E-15 109.4 14.1 139 351-495 71-226 (226)
100 PRK00121 trmB tRNA (guanine-N( 99.2 6.6E-11 1.4E-15 112.5 8.9 123 352-476 40-178 (202)
101 KOG1270 Methyltransferases [Co 99.2 4.8E-11 1E-15 114.0 7.8 98 353-456 90-196 (282)
102 COG4106 Tam Trans-aconitate me 99.2 5.3E-11 1.2E-15 110.3 7.7 126 342-476 20-154 (257)
103 PRK00216 ubiE ubiquinone/menaq 99.2 8.5E-10 1.8E-14 107.0 16.4 101 352-455 51-158 (239)
104 TIGR02021 BchM-ChlM magnesium 99.2 1.5E-10 3.2E-15 111.5 10.7 122 352-477 55-204 (219)
105 PRK11705 cyclopropane fatty ac 99.2 1.8E-10 3.9E-15 119.8 11.8 114 81-204 148-267 (383)
106 TIGR02072 BioC biotin biosynth 99.2 2.3E-10 4.9E-15 110.9 11.8 100 353-456 35-136 (240)
107 PRK06922 hypothetical protein; 99.2 9.6E-11 2.1E-15 126.3 9.5 103 353-456 419-538 (677)
108 PF08003 Methyltransf_9: Prote 99.1 2.7E-10 5.8E-15 111.9 11.7 109 90-204 105-219 (315)
109 KOG4300 Predicted methyltransf 99.1 2.2E-10 4.8E-15 105.4 10.2 102 351-457 75-184 (252)
110 TIGR00091 tRNA (guanine-N(7)-) 99.1 4.3E-10 9.2E-15 106.3 12.6 103 103-206 17-134 (194)
111 TIGR00406 prmA ribosomal prote 99.1 4.5E-10 9.8E-15 112.7 13.3 123 78-205 135-260 (288)
112 PRK13255 thiopurine S-methyltr 99.1 1.7E-10 3.6E-15 110.9 9.7 100 103-202 38-153 (218)
113 TIGR02469 CbiT precorrin-6Y C5 99.1 6E-10 1.3E-14 96.5 12.3 109 90-204 9-122 (124)
114 smart00138 MeTrc Methyltransfe 99.1 1.2E-10 2.5E-15 115.4 8.4 103 102-204 99-242 (264)
115 KOG3010 Methyltransferase [Gen 99.1 1.1E-10 2.3E-15 110.2 7.3 112 353-473 34-158 (261)
116 PF05401 NodS: Nodulation prot 99.1 1.7E-10 3.7E-15 106.7 8.5 99 101-205 42-147 (201)
117 PRK11188 rrmJ 23S rRNA methylt 99.1 2.1E-10 4.6E-15 109.6 9.2 92 102-205 51-166 (209)
118 smart00828 PKS_MT Methyltransf 99.1 2E-10 4.4E-15 110.8 9.2 98 105-205 2-105 (224)
119 TIGR00406 prmA ribosomal prote 99.1 4.2E-10 9.1E-15 112.9 11.6 116 353-477 160-281 (288)
120 PRK15001 SAM-dependent 23S rib 99.1 9.9E-10 2.1E-14 113.3 14.5 134 68-205 195-341 (378)
121 TIGR00138 gidB 16S rRNA methyl 99.1 9.9E-10 2.2E-14 102.6 12.9 96 103-205 43-143 (181)
122 PF07021 MetW: Methionine bios 99.1 1.9E-10 4.1E-15 106.1 7.9 122 344-475 7-163 (193)
123 TIGR03587 Pse_Me-ase pseudamin 99.1 4.8E-10 1E-14 106.7 10.8 98 353-455 44-142 (204)
124 TIGR02021 BchM-ChlM magnesium 99.1 5.2E-10 1.1E-14 107.7 11.1 116 84-203 37-157 (219)
125 PF05175 MTS: Methyltransferas 99.1 1E-09 2.2E-14 101.4 12.6 100 103-205 32-141 (170)
126 PRK09489 rsmC 16S ribosomal RN 99.1 1.2E-09 2.6E-14 111.9 14.2 143 90-255 186-336 (342)
127 PRK14968 putative methyltransf 99.1 1.2E-09 2.5E-14 102.1 12.2 121 352-478 23-172 (188)
128 PLN02585 magnesium protoporphy 99.1 1E-09 2.2E-14 110.9 12.2 116 86-206 127-251 (315)
129 COG2813 RsmC 16S RNA G1207 met 99.1 2.4E-09 5.2E-14 105.4 14.3 164 69-254 126-298 (300)
130 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.1E-09 2.3E-14 112.7 12.3 102 102-205 122-236 (390)
131 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1.5E-09 3.2E-14 104.2 12.7 110 90-204 29-143 (223)
132 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.2E-10 1.1E-14 105.7 9.0 120 353-474 17-153 (194)
133 PRK09489 rsmC 16S ribosomal RN 99.1 1.4E-09 3.1E-14 111.3 12.8 131 354-494 198-336 (342)
134 KOG1541 Predicted protein carb 99.1 1.3E-09 2.9E-14 101.3 11.2 123 348-473 46-181 (270)
135 PRK13944 protein-L-isoaspartat 99.1 1.5E-09 3.2E-14 103.5 11.9 107 88-204 60-173 (205)
136 PRK06202 hypothetical protein; 99.0 8.2E-10 1.8E-14 107.3 10.2 97 102-203 60-165 (232)
137 PRK05134 bifunctional 3-demeth 99.0 1.7E-09 3.8E-14 104.9 12.2 114 89-206 37-153 (233)
138 COG2264 PrmA Ribosomal protein 99.0 4E-10 8.6E-15 111.5 7.7 121 79-204 139-263 (300)
139 PRK00517 prmA ribosomal protei 99.0 2.3E-09 5E-14 105.4 13.0 117 78-205 95-214 (250)
140 PTZ00146 fibrillarin; Provisio 99.0 2.8E-09 6E-14 105.5 13.3 119 351-475 131-267 (293)
141 PRK11188 rrmJ 23S rRNA methylt 99.0 3.9E-09 8.4E-14 100.9 13.6 132 353-494 52-206 (209)
142 PRK08287 cobalt-precorrin-6Y C 99.0 6.3E-09 1.4E-13 97.6 14.8 105 91-204 22-131 (187)
143 COG2813 RsmC 16S RNA G1207 met 99.0 3.9E-08 8.5E-13 96.9 20.7 143 344-495 150-300 (300)
144 PRK00216 ubiE ubiquinone/menaq 99.0 2.7E-09 5.8E-14 103.5 12.6 112 90-204 41-158 (239)
145 TIGR00537 hemK_rel_arch HemK-r 99.0 2E-09 4.3E-14 100.3 11.0 100 104-206 21-142 (179)
146 COG2264 PrmA Ribosomal protein 99.0 2.8E-09 6E-14 105.6 12.2 132 352-495 162-300 (300)
147 PF08003 Methyltransf_9: Prote 99.0 2.6E-09 5.7E-14 105.0 11.8 127 342-474 105-262 (315)
148 PF06325 PrmA: Ribosomal prote 99.0 7.9E-10 1.7E-14 110.3 8.3 121 77-204 136-259 (295)
149 TIGR03840 TMPT_Se_Te thiopurin 99.0 7.6E-10 1.7E-14 105.9 7.9 122 353-479 35-187 (213)
150 PF06325 PrmA: Ribosomal prote 99.0 1.6E-09 3.5E-14 108.2 10.0 129 353-495 162-295 (295)
151 PRK13942 protein-L-isoaspartat 99.0 3.1E-09 6.8E-14 101.8 11.7 108 87-204 63-176 (212)
152 PRK07580 Mg-protoporphyrin IX 99.0 3.7E-09 8.1E-14 102.2 12.3 98 352-453 63-164 (230)
153 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.6E-09 3.5E-14 111.3 10.1 120 353-474 123-256 (390)
154 TIGR02469 CbiT precorrin-6Y C5 99.0 3.2E-09 6.9E-14 92.0 10.4 96 351-454 18-121 (124)
155 TIGR00438 rrmJ cell division p 99.0 3.5E-09 7.6E-14 99.5 11.4 138 352-493 32-186 (188)
156 TIGR03534 RF_mod_PrmC protein- 99.0 1.2E-08 2.6E-13 99.9 15.4 117 83-204 71-217 (251)
157 KOG1541 Predicted protein carb 99.0 2.1E-09 4.6E-14 100.0 9.2 116 86-207 34-163 (270)
158 PLN02585 magnesium protoporphy 99.0 2.8E-09 6.2E-14 107.7 11.1 121 353-478 145-298 (315)
159 TIGR00080 pimt protein-L-isoas 99.0 5.2E-09 1.1E-13 100.5 12.1 107 88-204 65-177 (215)
160 PRK07580 Mg-protoporphyrin IX 99.0 3.6E-09 7.7E-14 102.3 10.8 111 87-201 47-163 (230)
161 TIGR02081 metW methionine bios 99.0 2.2E-09 4.9E-14 101.3 8.9 90 354-448 15-105 (194)
162 TIGR01983 UbiG ubiquinone bios 98.9 3.6E-09 7.8E-14 101.9 10.1 103 102-206 45-151 (224)
163 TIGR01983 UbiG ubiquinone bios 98.9 4.5E-09 9.7E-14 101.3 10.7 97 353-455 46-149 (224)
164 PRK13255 thiopurine S-methyltr 98.9 1.5E-09 3.3E-14 104.3 7.0 122 353-479 38-190 (218)
165 PLN03075 nicotianamine synthas 98.9 4.3E-09 9.3E-14 104.5 10.3 102 102-204 123-233 (296)
166 PRK14967 putative methyltransf 98.9 1.4E-08 3.1E-13 98.0 13.3 102 103-206 37-161 (223)
167 TIGR03438 probable methyltrans 98.9 7.7E-09 1.7E-13 104.5 11.8 114 88-205 53-178 (301)
168 PRK13944 protein-L-isoaspartat 98.9 4.4E-09 9.6E-14 100.2 9.3 99 348-455 68-173 (205)
169 TIGR02716 C20_methyl_CrtF C-20 98.9 4.3E-09 9.4E-14 106.6 9.3 107 347-456 144-255 (306)
170 PRK05134 bifunctional 3-demeth 98.9 9.9E-09 2.2E-13 99.6 11.5 98 352-455 48-151 (233)
171 TIGR01177 conserved hypothetic 98.9 1.2E-08 2.6E-13 104.3 12.6 115 90-207 172-297 (329)
172 PRK04266 fibrillarin; Provisio 98.9 1.1E-08 2.3E-13 98.9 11.4 103 95-205 67-177 (226)
173 TIGR00080 pimt protein-L-isoas 98.9 4E-09 8.7E-14 101.3 8.3 97 348-454 73-176 (215)
174 PF13659 Methyltransf_26: Meth 98.9 2.4E-09 5.3E-14 92.1 5.9 101 104-205 2-116 (117)
175 PRK13942 protein-L-isoaspartat 98.9 6.5E-09 1.4E-13 99.6 9.2 102 344-455 68-176 (212)
176 PRK14968 putative methyltransf 98.9 3.3E-08 7.1E-13 92.3 13.6 102 102-205 23-149 (188)
177 TIGR02081 metW methionine bios 98.9 1.1E-08 2.3E-13 96.7 10.3 102 90-206 5-111 (194)
178 PRK14967 putative methyltransf 98.9 2E-08 4.3E-13 97.0 12.3 121 353-477 37-182 (223)
179 KOG1271 Methyltransferases [Ge 98.9 1.4E-08 2.9E-13 92.0 10.1 126 81-207 43-184 (227)
180 PRK14966 unknown domain/N5-glu 98.9 5E-08 1.1E-12 101.1 15.7 117 84-205 237-382 (423)
181 TIGR02716 C20_methyl_CrtF C-20 98.9 1.6E-08 3.5E-13 102.4 12.0 109 90-204 139-254 (306)
182 PRK07402 precorrin-6B methylas 98.9 5.6E-08 1.2E-12 91.9 14.7 120 347-475 35-166 (196)
183 COG4123 Predicted O-methyltran 98.9 3.5E-08 7.6E-13 95.3 13.1 148 347-495 39-213 (248)
184 PRK13256 thiopurine S-methyltr 98.8 2.4E-08 5.3E-13 95.8 11.9 102 103-204 44-163 (226)
185 COG4123 Predicted O-methyltran 98.8 3.3E-08 7.2E-13 95.5 12.6 125 79-207 25-173 (248)
186 PRK00312 pcm protein-L-isoaspa 98.8 2.9E-08 6.3E-13 95.0 12.1 108 88-205 66-176 (212)
187 cd02440 AdoMet_MTases S-adenos 98.8 1.6E-08 3.5E-13 83.2 9.0 99 105-203 1-103 (107)
188 PF05219 DREV: DREV methyltran 98.8 3E-08 6.5E-13 95.6 11.9 154 74-237 64-224 (265)
189 PRK09328 N5-glutamine S-adenos 98.8 6E-08 1.3E-12 96.5 14.7 140 352-494 108-275 (275)
190 TIGR03534 RF_mod_PrmC protein- 98.8 2.8E-08 6E-13 97.4 11.8 120 354-475 89-237 (251)
191 PF05175 MTS: Methyltransferas 98.8 1.5E-08 3.3E-13 93.7 9.3 116 352-468 31-155 (170)
192 PRK00377 cbiT cobalt-precorrin 98.8 6.7E-08 1.4E-12 91.6 13.7 99 102-205 40-146 (198)
193 PTZ00146 fibrillarin; Provisio 98.8 2.1E-08 4.6E-13 99.2 10.4 99 101-204 131-237 (293)
194 PF03291 Pox_MCEL: mRNA cappin 98.8 2.4E-08 5.2E-13 101.6 11.1 106 102-207 62-189 (331)
195 TIGR03533 L3_gln_methyl protei 98.8 6E-08 1.3E-12 97.1 13.8 125 353-479 122-274 (284)
196 COG4976 Predicted methyltransf 98.8 2.4E-09 5.2E-14 100.1 3.2 98 101-204 124-225 (287)
197 PF06080 DUF938: Protein of un 98.8 5E-08 1.1E-12 91.4 11.8 162 85-253 11-204 (204)
198 KOG2940 Predicted methyltransf 98.8 5.2E-09 1.1E-13 97.8 4.9 104 101-207 71-177 (325)
199 TIGR03438 probable methyltrans 98.8 1.2E-08 2.6E-13 103.0 8.0 101 353-454 64-176 (301)
200 PF05148 Methyltransf_8: Hypot 98.8 1.9E-08 4.1E-13 93.9 8.5 97 90-204 61-158 (219)
201 PLN03075 nicotianamine synthas 98.8 9.5E-08 2E-12 95.0 13.7 140 352-496 123-276 (296)
202 TIGR00536 hemK_fam HemK family 98.8 6.7E-08 1.4E-12 96.9 12.6 139 354-495 116-283 (284)
203 PRK09328 N5-glutamine S-adenos 98.8 1.7E-07 3.7E-12 93.2 15.4 116 86-204 94-238 (275)
204 KOG2361 Predicted methyltransf 98.8 1.3E-08 2.7E-13 96.3 6.7 119 84-207 53-186 (264)
205 TIGR03704 PrmC_rel_meth putati 98.8 4.8E-08 1E-12 96.0 11.1 128 353-481 87-242 (251)
206 TIGR00536 hemK_fam HemK family 98.8 1.8E-07 3.8E-12 93.8 15.0 118 85-205 98-245 (284)
207 KOG3010 Methyltransferase [Gen 98.8 2.1E-08 4.5E-13 94.9 7.7 92 104-203 35-136 (261)
208 TIGR00438 rrmJ cell division p 98.7 9.7E-08 2.1E-12 89.7 12.0 92 102-204 32-146 (188)
209 PRK14966 unknown domain/N5-glu 98.7 6.8E-08 1.5E-12 100.1 11.8 138 354-494 253-418 (423)
210 TIGR01177 conserved hypothetic 98.7 3.2E-08 6.9E-13 101.3 9.3 118 351-475 181-311 (329)
211 PRK07402 precorrin-6B methylas 98.7 1.1E-07 2.4E-12 89.8 12.3 107 91-205 31-143 (196)
212 KOG3045 Predicted RNA methylas 98.7 7.1E-08 1.5E-12 91.9 10.0 97 90-205 169-265 (325)
213 PLN02232 ubiquinone biosynthes 98.7 2.8E-08 6.2E-13 90.9 7.2 75 381-458 1-84 (160)
214 PLN02232 ubiquinone biosynthes 98.7 3.4E-08 7.3E-13 90.4 7.6 78 126-204 1-81 (160)
215 KOG1975 mRNA cap methyltransfe 98.7 2.8E-08 6.1E-13 97.4 7.4 107 101-207 116-240 (389)
216 TIGR03533 L3_gln_methyl protei 98.7 2.1E-07 4.7E-12 93.1 14.0 101 103-205 122-252 (284)
217 PF05148 Methyltransf_8: Hypot 98.7 5.6E-07 1.2E-11 84.1 15.1 124 353-496 73-199 (219)
218 PF05219 DREV: DREV methyltran 98.7 8.8E-08 1.9E-12 92.4 10.1 118 352-480 94-241 (265)
219 PF01135 PCMT: Protein-L-isoas 98.7 7.6E-08 1.7E-12 91.7 9.3 111 86-205 58-173 (209)
220 PRK11805 N5-glutamine S-adenos 98.7 1.8E-07 4E-12 94.6 12.5 118 354-473 135-280 (307)
221 PRK00312 pcm protein-L-isoaspa 98.7 8.9E-08 1.9E-12 91.7 9.7 96 347-455 73-175 (212)
222 PRK01544 bifunctional N5-gluta 98.7 1E-07 2.2E-12 102.8 11.1 123 353-476 139-290 (506)
223 PRK13943 protein-L-isoaspartat 98.7 1.8E-07 3.8E-12 94.9 12.1 107 88-204 68-180 (322)
224 cd02440 AdoMet_MTases S-adenos 98.7 7.5E-08 1.6E-12 79.1 7.9 96 355-454 1-103 (107)
225 PF05891 Methyltransf_PK: AdoM 98.7 2.4E-08 5.3E-13 94.0 5.1 102 102-203 55-160 (218)
226 PRK11805 N5-glutamine S-adenos 98.7 3.7E-07 8.1E-12 92.3 14.0 100 104-205 135-264 (307)
227 COG2890 HemK Methylase of poly 98.6 2.3E-07 5E-12 92.5 12.0 137 355-494 113-276 (280)
228 TIGR03704 PrmC_rel_meth putati 98.6 7.7E-07 1.7E-11 87.5 15.4 119 83-205 68-217 (251)
229 PRK04457 spermidine synthase; 98.6 3.9E-07 8.5E-12 90.1 13.2 101 352-454 66-176 (262)
230 smart00650 rADc Ribosomal RNA 98.6 1.5E-07 3.2E-12 86.9 8.6 106 90-203 3-112 (169)
231 COG2518 Pcm Protein-L-isoaspar 98.6 3.9E-07 8.4E-12 85.6 11.4 108 88-205 60-170 (209)
232 PRK10901 16S rRNA methyltransf 98.6 3.6E-07 7.8E-12 96.8 12.4 112 92-206 236-374 (427)
233 KOG2361 Predicted methyltransf 98.6 1.7E-07 3.8E-12 88.7 8.7 102 353-455 72-183 (264)
234 PRK00811 spermidine synthase; 98.6 6.8E-07 1.5E-11 89.5 13.6 102 102-204 76-191 (283)
235 PRK01581 speE spermidine synth 98.6 8.8E-07 1.9E-11 90.2 13.6 150 349-499 147-318 (374)
236 PF13659 Methyltransf_26: Meth 98.6 8.1E-08 1.8E-12 82.5 5.1 99 354-454 2-114 (117)
237 TIGR00563 rsmB ribosomal RNA s 98.5 5.5E-07 1.2E-11 95.4 11.6 117 349-469 235-386 (426)
238 PF02390 Methyltransf_4: Putat 98.5 1.9E-07 4E-12 88.2 7.2 119 355-475 20-156 (195)
239 PRK14901 16S rRNA methyltransf 98.5 5.3E-07 1.1E-11 95.7 11.5 103 102-206 252-386 (434)
240 PF00891 Methyltransf_2: O-met 98.5 4.4E-07 9.5E-12 88.6 10.0 93 102-204 100-199 (241)
241 PF02390 Methyltransf_4: Putat 98.5 2.8E-07 6.2E-12 87.0 8.2 100 105-205 20-134 (195)
242 PRK13943 protein-L-isoaspartat 98.5 3.7E-07 8.1E-12 92.6 9.5 96 351-456 79-181 (322)
243 COG2242 CobL Precorrin-6B meth 98.5 4.4E-06 9.5E-11 77.0 15.5 119 347-475 29-157 (187)
244 TIGR00563 rsmB ribosomal RNA s 98.5 6.7E-07 1.5E-11 94.8 11.7 112 92-207 230-371 (426)
245 PRK14904 16S rRNA methyltransf 98.5 3.3E-07 7.1E-12 97.7 9.2 104 102-207 250-380 (445)
246 PRK04457 spermidine synthase; 98.5 1.2E-06 2.6E-11 86.6 12.7 102 102-204 66-177 (262)
247 KOG3045 Predicted RNA methylas 98.5 1.5E-06 3.3E-11 82.9 12.6 107 355-480 183-292 (325)
248 PHA03411 putative methyltransf 98.5 7.5E-07 1.6E-11 87.4 10.4 95 103-203 65-182 (279)
249 TIGR00446 nop2p NOL1/NOP2/sun 98.5 2.3E-07 5E-12 92.0 6.8 105 102-207 71-202 (264)
250 PRK14904 16S rRNA methyltransf 98.5 7.9E-07 1.7E-11 94.8 11.0 121 349-470 247-396 (445)
251 PRK14901 16S rRNA methyltransf 98.5 1.7E-06 3.7E-11 91.9 13.6 125 349-474 249-408 (434)
252 PHA03411 putative methyltransf 98.5 8.4E-07 1.8E-11 87.1 10.1 120 353-475 65-210 (279)
253 PRK14903 16S rRNA methyltransf 98.5 8.3E-07 1.8E-11 94.0 10.8 105 102-207 237-369 (431)
254 PF05724 TPMT: Thiopurine S-me 98.5 7E-07 1.5E-11 85.8 9.3 96 102-202 37-153 (218)
255 PRK10611 chemotaxis methyltran 98.4 3.6E-07 7.8E-12 91.0 7.1 126 77-204 92-262 (287)
256 COG2890 HemK Methylase of poly 98.4 1.9E-06 4.2E-11 86.0 12.3 116 84-205 95-239 (280)
257 PRK13168 rumA 23S rRNA m(5)U19 98.4 1.4E-06 3E-11 92.8 11.6 115 85-207 282-403 (443)
258 PRK00811 spermidine synthase; 98.4 7.4E-07 1.6E-11 89.2 8.9 103 351-454 75-190 (283)
259 COG0220 Predicted S-adenosylme 98.4 1.3E-06 2.8E-11 84.1 10.0 100 104-205 50-165 (227)
260 PF00891 Methyltransf_2: O-met 98.4 4.8E-07 1E-11 88.4 6.8 105 346-457 94-201 (241)
261 PHA03412 putative methyltransf 98.4 1.4E-06 2.9E-11 83.8 9.5 93 103-202 50-160 (241)
262 PRK14903 16S rRNA methyltransf 98.4 1.1E-06 2.3E-11 93.1 9.8 120 349-469 234-384 (431)
263 PRK10901 16S rRNA methyltransf 98.4 1.2E-06 2.5E-11 93.0 10.0 118 349-469 241-390 (427)
264 TIGR00417 speE spermidine synt 98.4 6.2E-06 1.3E-10 82.1 14.6 103 102-205 72-187 (270)
265 PRK14902 16S rRNA methyltransf 98.4 2.2E-06 4.8E-11 91.3 12.1 123 351-474 249-403 (444)
266 KOG2899 Predicted methyltransf 98.4 2E-06 4.3E-11 81.5 10.1 102 102-203 58-208 (288)
267 COG2519 GCD14 tRNA(1-methylade 98.4 6.5E-06 1.4E-10 79.2 13.6 107 91-207 85-198 (256)
268 PLN02781 Probable caffeoyl-CoA 98.4 2.5E-06 5.3E-11 83.1 10.9 135 349-495 65-233 (234)
269 PRK14902 16S rRNA methyltransf 98.4 2.1E-06 4.6E-11 91.4 11.4 103 102-206 250-381 (444)
270 PRK01581 speE spermidine synth 98.4 1.6E-06 3.6E-11 88.2 9.8 103 101-204 149-268 (374)
271 TIGR00417 speE spermidine synt 98.4 4.7E-06 1E-10 82.9 12.8 102 351-454 71-185 (270)
272 PF06080 DUF938: Protein of un 98.4 3.3E-06 7.2E-11 79.3 10.8 135 355-494 28-204 (204)
273 PF01739 CheR: CheR methyltran 98.3 7.1E-07 1.5E-11 84.2 6.2 103 102-204 31-175 (196)
274 TIGR00478 tly hemolysin TlyA f 98.3 1.9E-06 4E-11 83.2 8.9 108 352-475 75-213 (228)
275 TIGR00446 nop2p NOL1/NOP2/sun 98.3 2.9E-06 6.2E-11 84.2 10.2 118 351-469 70-217 (264)
276 PF01728 FtsJ: FtsJ-like methy 98.3 1.2E-06 2.6E-11 81.7 7.1 143 348-494 19-180 (181)
277 PLN02366 spermidine synthase 98.3 4.6E-06 9.9E-11 84.2 11.6 102 102-204 91-206 (308)
278 PF05891 Methyltransf_PK: AdoM 98.3 3.5E-06 7.5E-11 79.6 9.9 128 352-482 55-204 (218)
279 KOG1271 Methyltransferases [Ge 98.3 2.6E-06 5.7E-11 77.4 8.6 119 355-474 70-200 (227)
280 PRK03522 rumB 23S rRNA methylu 98.3 4.7E-06 1E-10 84.8 11.6 116 86-208 159-278 (315)
281 PRK03612 spermidine synthase; 98.3 2.8E-06 6E-11 92.2 10.4 123 352-475 297-440 (521)
282 PF01135 PCMT: Protein-L-isoas 98.3 7.6E-07 1.6E-11 84.9 5.2 104 341-454 61-171 (209)
283 COG2242 CobL Precorrin-6B meth 98.3 1.1E-05 2.4E-10 74.3 12.5 104 92-204 26-135 (187)
284 PF03291 Pox_MCEL: mRNA cappin 98.3 1.5E-06 3.3E-11 88.4 7.6 104 352-457 62-188 (331)
285 PRK10909 rsmD 16S rRNA m(2)G96 98.3 8.6E-06 1.9E-10 77.1 12.0 121 82-206 34-161 (199)
286 PF01739 CheR: CheR methyltran 98.3 3.1E-06 6.7E-11 79.9 8.7 129 326-457 4-177 (196)
287 PRK13256 thiopurine S-methyltr 98.3 1.6E-06 3.5E-11 83.3 6.4 122 353-479 44-197 (226)
288 PLN02366 spermidine synthase 98.2 1.1E-05 2.4E-10 81.5 12.6 101 351-453 90-204 (308)
289 PF05724 TPMT: Thiopurine S-me 98.2 4.1E-06 8.9E-11 80.5 9.0 125 350-479 35-190 (218)
290 PLN02781 Probable caffeoyl-CoA 98.2 1E-05 2.2E-10 78.7 11.1 109 85-203 56-177 (234)
291 TIGR00478 tly hemolysin TlyA f 98.2 1.5E-05 3.3E-10 76.9 12.1 99 90-204 64-171 (228)
292 PRK13168 rumA 23S rRNA m(5)U19 98.2 9.5E-06 2.1E-10 86.5 11.7 119 348-478 293-423 (443)
293 TIGR00479 rumA 23S rRNA (uraci 98.2 8.9E-06 1.9E-10 86.4 11.4 116 85-207 277-399 (431)
294 PHA03412 putative methyltransf 98.2 4.6E-06 9.9E-11 80.2 8.0 98 353-453 50-160 (241)
295 smart00650 rADc Ribosomal RNA 98.2 4.3E-06 9.3E-11 77.1 7.3 103 346-455 7-113 (169)
296 PLN02672 methionine S-methyltr 98.2 2.8E-05 6.1E-10 89.6 15.4 102 103-205 119-279 (1082)
297 PRK03612 spermidine synthase; 98.2 1.4E-05 3E-10 86.8 12.2 103 102-205 297-416 (521)
298 PRK03522 rumB 23S rRNA methylu 98.1 9.2E-06 2E-10 82.7 9.5 113 353-478 174-295 (315)
299 PRK11783 rlmL 23S rRNA m(2)G24 98.1 9.4E-06 2E-10 91.2 10.4 103 103-206 539-658 (702)
300 TIGR00479 rumA 23S rRNA (uraci 98.1 1.3E-05 2.7E-10 85.3 10.8 123 345-478 285-419 (431)
301 PF10294 Methyltransf_16: Puta 98.1 1.1E-05 2.4E-10 74.8 8.9 120 83-205 22-157 (173)
302 PRK15128 23S rRNA m(5)C1962 me 98.1 1.1E-05 2.4E-10 84.4 9.5 99 103-204 221-339 (396)
303 COG2521 Predicted archaeal met 98.1 1.1E-05 2.3E-10 76.3 8.3 140 347-495 129-287 (287)
304 KOG2904 Predicted methyltransf 98.1 2.6E-05 5.7E-10 75.4 11.1 120 84-205 129-286 (328)
305 PRK15128 23S rRNA m(5)C1962 me 98.1 1.9E-05 4.2E-10 82.5 11.1 123 353-478 221-368 (396)
306 KOG1499 Protein arginine N-met 98.1 1.4E-05 2.9E-10 80.3 9.2 99 102-202 60-165 (346)
307 PLN02476 O-methyltransferase 98.1 2.5E-05 5.5E-10 77.3 10.9 136 348-495 114-278 (278)
308 TIGR02085 meth_trns_rumB 23S r 98.1 3.6E-05 7.9E-10 80.1 12.3 115 86-207 219-337 (374)
309 COG4122 Predicted O-methyltran 98.1 8E-05 1.7E-09 71.1 13.4 109 85-203 47-165 (219)
310 COG0220 Predicted S-adenosylme 98.0 1.5E-05 3.2E-10 76.8 8.4 112 354-469 50-180 (227)
311 KOG2940 Predicted methyltransf 98.0 5E-06 1.1E-10 78.1 4.9 123 353-480 73-228 (325)
312 COG1352 CheR Methylase of chem 98.0 2.7E-05 5.9E-10 76.7 8.7 103 102-204 96-241 (268)
313 COG1041 Predicted DNA modifica 98.0 3.5E-05 7.6E-10 77.7 9.5 113 90-205 187-311 (347)
314 COG3963 Phospholipid N-methylt 98.0 3.4E-05 7.4E-10 69.4 8.2 110 88-204 36-156 (194)
315 COG0500 SmtA SAM-dependent met 98.0 5.7E-05 1.2E-09 65.9 9.9 99 106-207 52-158 (257)
316 KOG1499 Protein arginine N-met 97.9 1.5E-05 3.2E-10 80.0 6.5 96 353-452 61-164 (346)
317 PRK11727 23S rRNA mA1618 methy 97.9 6.5E-05 1.4E-09 76.1 11.2 96 83-178 89-201 (321)
318 COG2521 Predicted archaeal met 97.9 9.5E-06 2.1E-10 76.6 4.8 120 84-204 116-245 (287)
319 COG2519 GCD14 tRNA(1-methylade 97.9 7E-05 1.5E-09 72.2 10.8 118 348-473 90-214 (256)
320 PF08704 GCD14: tRNA methyltra 97.9 9.4E-05 2E-09 72.2 11.7 109 90-207 30-149 (247)
321 PRK14896 ksgA 16S ribosomal RN 97.9 3.4E-05 7.4E-10 76.2 8.9 85 86-176 15-101 (258)
322 KOG1975 mRNA cap methyltransfe 97.9 2.9E-05 6.2E-10 76.7 8.0 113 352-466 117-250 (389)
323 KOG1331 Predicted methyltransf 97.9 4.3E-06 9.3E-11 81.4 2.3 96 103-204 46-143 (293)
324 PRK04148 hypothetical protein; 97.9 0.00011 2.4E-09 64.6 10.8 66 351-421 15-83 (134)
325 PLN02476 O-methyltransferase 97.9 7.5E-05 1.6E-09 74.0 10.8 96 103-203 119-227 (278)
326 PF01596 Methyltransf_3: O-met 97.9 6.4E-05 1.4E-09 71.5 9.9 109 86-204 34-155 (205)
327 PF02527 GidB: rRNA small subu 97.9 0.00017 3.6E-09 67.4 12.5 138 328-477 25-173 (184)
328 PRK00274 ksgA 16S ribosomal RN 97.9 2.8E-05 6E-10 77.4 7.8 84 87-175 29-114 (272)
329 COG2518 Pcm Protein-L-isoaspar 97.9 4.8E-05 1.1E-09 71.6 8.7 98 344-454 64-168 (209)
330 PLN02672 methionine S-methyltr 97.9 5.8E-05 1.3E-09 87.1 10.7 121 354-475 120-299 (1082)
331 COG0500 SmtA SAM-dependent met 97.9 6.5E-05 1.4E-09 65.5 8.8 95 356-457 52-157 (257)
332 PF12147 Methyltransf_20: Puta 97.9 0.00012 2.5E-09 71.9 10.7 106 101-207 134-252 (311)
333 COG2263 Predicted RNA methylas 97.8 0.00018 3.8E-09 66.4 11.1 89 102-194 45-137 (198)
334 COG4122 Predicted O-methyltran 97.8 0.00016 3.5E-09 69.0 11.2 99 349-453 56-164 (219)
335 TIGR02085 meth_trns_rumB 23S r 97.8 9.1E-05 2E-09 77.2 10.4 114 353-479 234-356 (374)
336 TIGR00755 ksgA dimethyladenosi 97.8 0.00014 3E-09 71.7 11.0 85 86-176 15-104 (253)
337 PF01596 Methyltransf_3: O-met 97.8 6.1E-05 1.3E-09 71.6 8.0 136 348-495 41-205 (205)
338 PF07942 N2227: N2227-like pro 97.8 0.00018 3.9E-09 70.9 11.4 155 86-245 38-241 (270)
339 KOG1269 SAM-dependent methyltr 97.8 3.2E-05 6.8E-10 79.6 6.3 119 327-453 88-213 (364)
340 KOG1269 SAM-dependent methyltr 97.8 3.2E-05 6.8E-10 79.6 6.2 100 103-203 111-214 (364)
341 KOG3178 Hydroxyindole-O-methyl 97.8 9.6E-05 2.1E-09 74.4 9.3 96 103-205 178-276 (342)
342 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 2.4E-05 5.2E-10 76.5 4.9 119 86-204 40-199 (256)
343 PF05185 PRMT5: PRMT5 arginine 97.8 0.00018 3.8E-09 76.5 11.5 130 322-452 151-294 (448)
344 PLN02823 spermine synthase 97.8 0.00018 3.9E-09 73.6 10.7 102 102-204 103-220 (336)
345 PRK10611 chemotaxis methyltran 97.7 6E-05 1.3E-09 75.2 6.8 124 325-457 94-264 (287)
346 PTZ00338 dimethyladenosine tra 97.7 0.00011 2.4E-09 73.9 8.6 87 86-176 22-111 (294)
347 PF02475 Met_10: Met-10+ like- 97.7 0.00024 5.2E-09 67.2 10.3 122 69-201 72-199 (200)
348 COG2263 Predicted RNA methylas 97.7 0.00013 2.7E-09 67.3 7.6 119 353-477 46-166 (198)
349 KOG2899 Predicted methyltransf 97.6 0.00015 3.3E-09 69.0 7.7 99 355-454 61-208 (288)
350 PF11968 DUF3321: Putative met 97.6 0.00019 4.1E-09 67.7 8.3 114 104-243 53-178 (219)
351 KOG1331 Predicted methyltransf 97.6 4.1E-05 8.8E-10 74.7 3.8 95 354-453 47-141 (293)
352 PF05185 PRMT5: PRMT5 arginine 97.6 0.00013 2.9E-09 77.3 8.1 96 103-201 187-294 (448)
353 PRK00274 ksgA 16S ribosomal RN 97.6 9E-05 1.9E-09 73.8 6.1 71 349-422 39-112 (272)
354 PRK04148 hypothetical protein; 97.6 0.00056 1.2E-08 60.2 10.2 99 90-203 6-108 (134)
355 PRK10909 rsmD 16S rRNA m(2)G96 97.6 0.0003 6.5E-09 66.6 8.9 96 354-457 55-161 (199)
356 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00024 5.1E-09 69.6 8.4 141 352-494 56-256 (256)
357 TIGR00755 ksgA dimethyladenosi 97.6 0.00025 5.5E-09 69.8 8.6 74 346-422 23-101 (253)
358 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00028 6.1E-09 69.0 8.8 110 84-203 66-189 (247)
359 PF12147 Methyltransf_20: Puta 97.6 0.0009 1.9E-08 65.8 12.0 125 351-475 134-275 (311)
360 KOG3987 Uncharacterized conser 97.6 0.0001 2.2E-09 68.4 5.0 128 74-211 84-216 (288)
361 PRK14896 ksgA 16S ribosomal RN 97.5 0.00016 3.4E-09 71.5 6.5 72 351-425 28-101 (258)
362 KOG3191 Predicted N6-DNA-methy 97.5 0.00049 1.1E-08 62.9 8.9 102 103-206 44-170 (209)
363 KOG1661 Protein-L-isoaspartate 97.5 0.00062 1.3E-08 63.6 9.7 91 102-204 82-193 (237)
364 PRK04338 N(2),N(2)-dimethylgua 97.5 0.00052 1.1E-08 71.5 10.5 95 104-204 59-158 (382)
365 KOG2352 Predicted spermine/spe 97.5 0.00054 1.2E-08 71.7 10.3 99 105-204 51-161 (482)
366 KOG2904 Predicted methyltransf 97.5 0.0024 5.2E-08 62.1 13.8 144 330-477 129-313 (328)
367 TIGR00095 RNA methyltransferas 97.5 0.00099 2.1E-08 62.6 11.1 100 103-205 50-160 (189)
368 PF01728 FtsJ: FtsJ-like methy 97.5 0.00037 8.1E-09 64.8 8.1 104 89-204 9-139 (181)
369 PRK11933 yebU rRNA (cytosine-C 97.5 0.0017 3.6E-08 69.4 13.8 105 101-207 112-245 (470)
370 COG1352 CheR Methylase of chem 97.5 0.00076 1.6E-08 66.6 10.2 127 327-457 71-243 (268)
371 PF10294 Methyltransf_16: Puta 97.4 0.00029 6.2E-09 65.3 6.5 101 351-456 44-157 (173)
372 PF07942 N2227: N2227-like pro 97.4 0.0022 4.7E-08 63.3 12.9 119 353-477 57-240 (270)
373 PF01170 UPF0020: Putative RNA 97.4 0.00072 1.6E-08 63.0 9.0 112 90-204 18-151 (179)
374 KOG1661 Protein-L-isoaspartate 97.4 0.00019 4E-09 67.0 4.8 93 353-454 83-192 (237)
375 PLN02823 spermine synthase 97.4 0.003 6.6E-08 64.6 14.2 101 352-454 103-219 (336)
376 COG1189 Predicted rRNA methyla 97.4 0.0022 4.8E-08 61.3 12.1 133 353-495 80-243 (245)
377 PLN02589 caffeoyl-CoA O-methyl 97.4 0.0012 2.7E-08 64.5 10.5 136 348-495 75-246 (247)
378 TIGR02143 trmA_only tRNA (urac 97.3 0.0011 2.3E-08 68.6 10.0 113 85-207 183-314 (353)
379 PRK00536 speE spermidine synth 97.3 0.0012 2.6E-08 65.1 9.8 95 347-456 67-172 (262)
380 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.00048 1E-08 69.9 6.7 119 86-206 32-185 (311)
381 COG0421 SpeE Spermidine syntha 97.3 0.0036 7.8E-08 62.4 12.7 109 90-204 63-190 (282)
382 PF08704 GCD14: tRNA methyltra 97.2 0.0011 2.4E-08 64.7 8.4 120 347-474 35-166 (247)
383 PF09243 Rsm22: Mitochondrial 97.2 0.0016 3.4E-08 64.9 9.7 122 352-477 33-166 (274)
384 PF01269 Fibrillarin: Fibrilla 97.2 0.0024 5.3E-08 60.6 10.1 124 350-480 71-214 (229)
385 PRK05031 tRNA (uracil-5-)-meth 97.2 0.0014 3E-08 68.1 9.3 113 85-207 192-323 (362)
386 PF09243 Rsm22: Mitochondrial 97.2 0.0018 3.8E-08 64.6 9.7 114 86-207 19-142 (274)
387 PRK11760 putative 23S rRNA C24 97.2 0.0036 7.8E-08 63.4 11.8 92 101-204 210-305 (357)
388 PF11968 DUF3321: Putative met 97.2 0.0019 4E-08 61.2 9.2 126 354-494 53-192 (219)
389 COG0293 FtsJ 23S rRNA methylas 97.2 0.0014 3.1E-08 61.7 8.1 110 83-204 27-159 (205)
390 COG1092 Predicted SAM-dependen 97.2 0.0021 4.6E-08 66.8 10.2 145 329-478 197-365 (393)
391 TIGR03439 methyl_EasF probable 97.2 0.0031 6.7E-08 64.0 11.1 116 86-205 64-198 (319)
392 PTZ00338 dimethyladenosine tra 97.2 0.00056 1.2E-08 68.8 5.7 70 351-423 35-109 (294)
393 COG2265 TrmA SAM-dependent met 97.2 0.0036 7.9E-08 66.1 11.8 116 85-207 278-399 (432)
394 PRK11727 23S rRNA mA1618 methy 97.2 0.0016 3.5E-08 66.0 8.7 127 348-477 110-267 (321)
395 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0019 4E-08 67.1 9.1 110 355-479 209-343 (362)
396 TIGR02143 trmA_only tRNA (urac 97.1 0.0013 2.7E-08 68.1 7.6 110 355-478 200-333 (353)
397 COG4627 Uncharacterized protei 97.1 8.3E-05 1.8E-09 66.0 -1.1 58 153-210 34-92 (185)
398 PF02527 GidB: rRNA small subu 97.1 0.004 8.6E-08 58.2 10.0 92 105-203 51-147 (184)
399 TIGR00095 RNA methyltransferas 97.1 0.002 4.3E-08 60.6 8.0 99 353-457 50-161 (189)
400 PRK11760 putative 23S rRNA C24 97.1 0.0093 2E-07 60.4 13.0 90 352-454 211-304 (357)
401 KOG3191 Predicted N6-DNA-methy 97.0 0.024 5.2E-07 52.1 14.1 124 353-478 44-192 (209)
402 PF01170 UPF0020: Putative RNA 97.0 0.0031 6.8E-08 58.7 8.8 123 348-477 24-169 (179)
403 TIGR02987 met_A_Alw26 type II 97.0 0.0036 7.8E-08 68.3 10.3 20 103-122 32-51 (524)
404 PRK00536 speE spermidine synth 97.0 0.0053 1.1E-07 60.5 10.3 90 101-204 71-171 (262)
405 KOG3987 Uncharacterized conser 97.0 0.00032 6.8E-09 65.2 1.6 88 354-453 114-205 (288)
406 COG0030 KsgA Dimethyladenosine 97.0 0.0026 5.7E-08 62.3 8.0 86 86-175 16-104 (259)
407 COG1189 Predicted rRNA methyla 97.0 0.015 3.2E-07 55.8 12.7 149 83-243 62-221 (245)
408 COG0357 GidB Predicted S-adeno 96.9 0.014 3E-07 55.7 12.4 142 327-480 43-196 (215)
409 PF03602 Cons_hypoth95: Conser 96.9 0.002 4.3E-08 60.3 6.3 116 86-205 26-154 (183)
410 PF01564 Spermine_synth: Sperm 96.9 0.002 4.4E-08 63.1 6.7 102 102-204 76-191 (246)
411 PRK11933 yebU rRNA (cytosine-C 96.9 0.0042 9.1E-08 66.4 9.5 120 349-469 110-260 (470)
412 KOG1500 Protein arginine N-met 96.9 0.0024 5.2E-08 63.5 6.8 106 343-453 168-280 (517)
413 KOG0820 Ribosomal RNA adenine 96.8 0.0037 8.1E-08 60.7 7.7 85 88-176 46-133 (315)
414 KOG1500 Protein arginine N-met 96.8 0.0062 1.3E-07 60.7 9.2 100 102-204 177-282 (517)
415 KOG3420 Predicted RNA methylas 96.8 0.003 6.5E-08 55.6 6.0 88 86-176 34-124 (185)
416 PRK00050 16S rRNA m(4)C1402 me 96.8 0.0016 3.4E-08 65.4 4.8 79 348-426 15-101 (296)
417 COG1092 Predicted SAM-dependen 96.8 0.0088 1.9E-07 62.2 10.4 104 103-207 218-339 (393)
418 COG3963 Phospholipid N-methylt 96.8 0.0047 1E-07 55.9 7.1 111 343-454 39-155 (194)
419 COG0421 SpeE Spermidine syntha 96.7 0.0079 1.7E-07 60.0 9.4 104 347-454 71-189 (282)
420 KOG1663 O-methyltransferase [S 96.7 0.019 4E-07 54.8 11.0 109 85-203 61-182 (237)
421 COG2520 Predicted methyltransf 96.7 0.008 1.7E-07 61.2 9.2 115 80-204 170-289 (341)
422 PF08123 DOT1: Histone methyla 96.6 0.004 8.7E-08 59.2 6.3 118 80-202 22-156 (205)
423 PRK04338 N(2),N(2)-dimethylgua 96.6 0.0041 8.9E-08 64.9 6.6 92 354-454 59-157 (382)
424 PF01269 Fibrillarin: Fibrilla 96.6 0.018 4E-07 54.7 10.2 113 86-204 56-178 (229)
425 PF02384 N6_Mtase: N-6 DNA Met 96.5 0.021 4.5E-07 57.8 11.2 147 348-495 42-233 (311)
426 COG3897 Predicted methyltransf 96.5 0.012 2.6E-07 54.7 8.0 99 102-206 79-180 (218)
427 COG0144 Sun tRNA and rRNA cyto 96.4 0.026 5.7E-07 58.4 10.9 107 100-207 154-291 (355)
428 COG0293 FtsJ 23S rRNA methylas 96.4 0.0082 1.8E-07 56.6 6.5 134 353-494 46-200 (205)
429 COG0742 N6-adenine-specific me 96.4 0.059 1.3E-06 50.2 12.0 123 84-207 25-157 (187)
430 COG1041 Predicted DNA modifica 96.4 0.01 2.2E-07 60.2 7.5 115 353-475 198-326 (347)
431 PF10672 Methyltrans_SAM: S-ad 96.3 0.013 2.9E-07 58.4 8.2 103 103-206 124-240 (286)
432 PF10672 Methyltrans_SAM: S-ad 96.2 0.012 2.6E-07 58.8 7.2 100 353-456 124-239 (286)
433 PF13679 Methyltransf_32: Meth 96.2 0.043 9.3E-07 48.9 10.2 97 101-206 24-133 (141)
434 KOG3178 Hydroxyindole-O-methyl 96.2 0.027 5.9E-07 57.0 9.7 100 352-456 177-276 (342)
435 KOG1709 Guanidinoacetate methy 96.2 0.017 3.8E-07 54.3 7.6 113 86-203 88-205 (271)
436 PF02475 Met_10: Met-10+ like- 96.2 0.012 2.7E-07 55.6 6.9 90 353-452 102-199 (200)
437 TIGR02987 met_A_Alw26 type II 96.2 0.061 1.3E-06 58.7 13.3 142 353-495 32-247 (524)
438 KOG2915 tRNA(1-methyladenosine 96.0 0.12 2.5E-06 50.6 12.5 106 90-204 95-209 (314)
439 TIGR03439 methyl_EasF probable 96.0 0.06 1.3E-06 54.7 11.3 98 354-453 78-195 (319)
440 COG5459 Predicted rRNA methyla 96.0 0.059 1.3E-06 54.3 10.7 105 102-207 113-228 (484)
441 PRK00050 16S rRNA m(4)C1402 me 96.0 0.0082 1.8E-07 60.3 4.9 48 88-137 7-59 (296)
442 COG4627 Uncharacterized protei 96.0 0.0013 2.9E-08 58.5 -0.9 44 410-454 42-85 (185)
443 TIGR00308 TRM1 tRNA(guanine-26 96.0 0.024 5.2E-07 59.0 8.2 95 104-204 46-147 (374)
444 PF03602 Cons_hypoth95: Conser 95.9 0.008 1.7E-07 56.2 3.8 99 353-457 43-155 (183)
445 PF03492 Methyltransf_7: SAM d 95.8 0.042 9E-07 56.4 9.2 104 101-205 15-184 (334)
446 PRK13699 putative methylase; P 95.8 0.26 5.6E-06 47.7 14.2 42 352-396 163-204 (227)
447 KOG2798 Putative trehalase [Ca 95.8 0.038 8.1E-07 55.0 8.3 158 86-245 132-336 (369)
448 PF05958 tRNA_U5-meth_tr: tRNA 95.8 0.036 7.8E-07 57.3 8.7 114 84-207 181-313 (352)
449 PRK11524 putative methyltransf 95.8 0.13 2.9E-06 51.4 12.5 45 349-396 205-249 (284)
450 COG1889 NOP1 Fibrillarin-like 95.7 0.2 4.4E-06 47.0 12.1 97 349-453 73-178 (231)
451 PLN02668 indole-3-acetate carb 95.6 0.043 9.3E-07 57.0 8.3 104 103-207 64-240 (386)
452 PF01564 Spermine_synth: Sperm 95.6 0.12 2.5E-06 50.7 10.9 144 352-496 76-239 (246)
453 PF13679 Methyltransf_32: Meth 95.5 0.021 4.7E-07 50.8 5.1 44 351-396 24-72 (141)
454 COG0357 GidB Predicted S-adeno 95.5 0.1 2.2E-06 49.8 9.7 93 103-202 68-166 (215)
455 TIGR00308 TRM1 tRNA(guanine-26 95.5 0.024 5.1E-07 59.0 5.8 93 355-454 47-146 (374)
456 KOG3201 Uncharacterized conser 95.4 0.0037 8.1E-08 56.1 -0.2 45 162-207 99-143 (201)
457 COG0116 Predicted N6-adenine-s 95.4 0.13 2.9E-06 53.0 10.9 115 90-207 181-347 (381)
458 PF00398 RrnaAD: Ribosomal RNA 95.4 0.033 7.2E-07 55.1 6.4 100 86-196 16-123 (262)
459 COG5459 Predicted rRNA methyla 95.4 0.056 1.2E-06 54.5 7.7 104 352-457 113-227 (484)
460 KOG1709 Guanidinoacetate methy 95.3 0.047 1E-06 51.5 6.7 119 332-458 84-209 (271)
461 KOG3115 Methyltransferase-like 95.3 0.038 8.2E-07 51.6 5.7 114 355-471 63-200 (249)
462 KOG1663 O-methyltransferase [S 95.2 0.03 6.5E-07 53.4 5.2 102 347-454 68-182 (237)
463 COG0144 Sun tRNA and rRNA cyto 95.2 0.13 2.9E-06 53.2 10.5 123 347-469 151-306 (355)
464 KOG2187 tRNA uracil-5-methyltr 95.2 0.041 8.8E-07 58.2 6.4 73 83-158 366-441 (534)
465 PF13578 Methyltransf_24: Meth 95.0 0.0083 1.8E-07 50.4 0.8 95 357-455 1-105 (106)
466 COG4798 Predicted methyltransf 95.0 0.071 1.5E-06 49.5 6.7 103 102-207 48-169 (238)
467 KOG3201 Uncharacterized conser 94.9 0.019 4.2E-07 51.6 2.8 122 353-477 30-164 (201)
468 COG1889 NOP1 Fibrillarin-like 94.8 0.4 8.7E-06 45.0 11.0 113 86-204 59-180 (231)
469 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.6 0.056 1.2E-06 54.1 5.6 104 101-206 84-221 (283)
470 COG2265 TrmA SAM-dependent met 94.6 0.24 5.1E-06 52.6 10.3 119 344-473 285-414 (432)
471 PF04672 Methyltransf_19: S-ad 94.5 0.083 1.8E-06 52.0 6.3 102 102-205 68-191 (267)
472 PF09445 Methyltransf_15: RNA 94.4 0.029 6.4E-07 51.2 2.7 110 354-468 1-133 (163)
473 COG4076 Predicted RNA methylas 94.3 0.079 1.7E-06 48.9 5.3 92 104-202 34-133 (252)
474 KOG2798 Putative trehalase [Ca 94.3 0.37 8E-06 48.1 10.1 62 414-478 258-336 (369)
475 PF09445 Methyltransf_15: RNA 94.1 0.1 2.2E-06 47.7 5.6 69 105-174 2-77 (163)
476 KOG1122 tRNA and rRNA cytosine 94.1 0.33 7.2E-06 50.3 9.7 107 99-207 238-374 (460)
477 COG0742 N6-adenine-specific me 93.9 0.26 5.5E-06 46.0 7.9 109 343-457 32-156 (187)
478 KOG1099 SAM-dependent methyltr 93.9 0.015 3.2E-07 55.3 -0.4 140 329-472 16-185 (294)
479 PF03059 NAS: Nicotianamine sy 93.8 0.55 1.2E-05 46.6 10.5 140 353-495 121-272 (276)
480 COG4798 Predicted methyltransf 93.8 0.24 5.3E-06 46.1 7.3 103 352-456 48-167 (238)
481 PF05958 tRNA_U5-meth_tr: tRNA 93.8 0.69 1.5E-05 47.9 11.7 122 341-477 186-331 (352)
482 COG4262 Predicted spermidine s 93.6 0.41 8.9E-06 48.7 9.2 129 74-204 260-407 (508)
483 TIGR01444 fkbM_fam methyltrans 93.6 0.07 1.5E-06 47.1 3.5 41 355-396 1-41 (143)
484 PLN02668 indole-3-acetate carb 93.6 0.43 9.3E-06 49.7 9.7 76 353-429 64-176 (386)
485 PF13578 Methyltransf_24: Meth 93.5 0.025 5.5E-07 47.4 0.5 93 107-203 1-104 (106)
486 PF05971 Methyltransf_10: Prot 93.5 0.21 4.6E-06 50.1 7.0 96 83-178 80-189 (299)
487 KOG3420 Predicted RNA methylas 93.3 0.18 4E-06 44.7 5.5 89 353-443 49-144 (185)
488 PF06859 Bin3: Bicoid-interact 93.2 0.032 6.8E-07 47.1 0.6 39 416-454 2-43 (110)
489 KOG0820 Ribosomal RNA adenine 93.1 0.25 5.3E-06 48.4 6.5 102 352-456 58-178 (315)
490 COG3897 Predicted methyltransf 93.0 0.35 7.6E-06 45.1 7.2 100 349-456 76-180 (218)
491 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.0 0.19 4.1E-06 50.4 5.9 126 348-474 81-243 (283)
492 PF03059 NAS: Nicotianamine sy 92.8 1 2.3E-05 44.7 10.6 101 103-204 121-230 (276)
493 PHA01634 hypothetical protein 92.7 0.23 5E-06 43.0 5.1 64 325-395 5-69 (156)
494 KOG2352 Predicted spermine/spe 92.7 0.75 1.6E-05 48.7 10.0 98 355-454 51-160 (482)
495 COG0030 KsgA Dimethyladenosine 92.6 0.28 6E-06 48.2 6.4 74 345-421 23-101 (259)
496 KOG3115 Methyltransferase-like 92.6 0.21 4.5E-06 46.9 5.1 26 105-130 63-92 (249)
497 KOG4589 Cell division protein 92.6 1.2 2.6E-05 41.4 9.9 131 353-494 70-225 (232)
498 PRK10742 putative methyltransf 92.6 0.36 7.7E-06 47.1 6.9 120 349-480 85-221 (250)
499 TIGR01444 fkbM_fam methyltrans 92.5 0.21 4.6E-06 44.0 5.1 35 105-139 1-39 (143)
500 COG3129 Predicted SAM-dependen 92.5 0.31 6.8E-06 46.6 6.2 96 82-177 54-164 (292)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.3e-127 Score=976.49 Aligned_cols=481 Identities=64% Similarity=1.176 Sum_probs=464.0
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChh
Q 010592 4 PRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQ 83 (506)
Q Consensus 4 ~~~~~~~~~~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~ 83 (506)
++++|+|||||||+.+++.+|++|+|+||+.|++||+|+|++||+|+||+.++.+|+.|+|+..+++++.|||+|++|.+
T Consensus 17 ~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~ 96 (506)
T PF03141_consen 17 SRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPH 96 (506)
T ss_pred CcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCC--CCCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 84 GADKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
|+.+|++.|.++++. ..+..+++||||||+|+|+++|.+++|+++.+++.+.+++++++|.+||+++.+.+....+||
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLP 176 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLP 176 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcccccc
Confidence 999999999999987 667788999999999999999999999999999999999999999999999999988899999
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceee
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~ 241 (506)
|++++||+|||+.|+++|.++...+|-|+.|+|||||||++++||.+ .++.++...+++.|+++++++||+.
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~ 248 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKK 248 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999985 3556778899999999999999999
Q ss_pred ccccCceEEEEecCCCchhhh-ccCCCCCCCCC-CCCCCchhhccCcccccCCcc----cCCCCCcCCccccccCCCCcc
Q 010592 242 KSEKGEIAVWQKKVNDESCRA-RRDDSRANFCK-SSDADDVWYKKMEGCITPYPE----VAGGELKAFPERLYAIPPRIS 315 (506)
Q Consensus 242 ~~~~~~~~i~~kp~~~~~cy~-~~~~~~~~~c~-~~~~~~~wy~~l~~c~~~~~~----~~~~~~~~~p~rl~~~p~~~~ 315 (506)
++++++++|||||.+| +||. +...+.|++|. ++|+|++||++|++||+++|+ .+++.+++||+||+++|+|+.
T Consensus 249 va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~ 327 (506)
T PF03141_consen 249 VAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLS 327 (506)
T ss_pred heeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhh
Confidence 9999999999999987 9999 55569999999 899999999999999999994 578888999999999999999
Q ss_pred CCCCCCCChhhhhhhhhhhHHHHHHHHHHhh-hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH
Q 010592 316 SGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY 394 (506)
Q Consensus 316 ~~~~~~~~~~~f~~d~~~W~~~v~~y~~~~~-~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~ 394 (506)
.+++.|.+.|.|.+|+++|+++|.+|++++. .++++++||||||++|+|||||+|.+.+||||||||++. +++|.+++
T Consensus 328 ~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vIy 406 (506)
T PF03141_consen 328 SGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVIY 406 (506)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCC-CCcchhhh
Confidence 9999999999999999999999999999887 899999999999999999999999999999999999965 59999999
Q ss_pred hcCccceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceE
Q 010592 395 ERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 395 ~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~ 474 (506)
+|||+|+||+|||+|+|||+|||||||+++|+.+.++|+++++|.||||||||||++||||..++++++++++++|+|++
T Consensus 407 dRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 407 DRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEV 486 (506)
T ss_pred hcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCeEEEEEEe
Q 010592 475 KMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k 494 (506)
.++++|+|+.++|++|+|+|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 99999999999999999998
No 2
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.94 E-value=1.9e-25 Score=239.34 Aligned_cols=350 Identities=14% Similarity=0.156 Sum_probs=195.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc--cCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~--~lp~~~~ 165 (506)
..+.+.++.. ++.+|||||||+|.++..|++. .++++|+++.++..+.. .......+.+.+.|.. .++++++
T Consensus 27 ~~il~~l~~~--~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPY--EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCcc--CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCC
Confidence 3455555432 3458999999999999999876 48899998876644321 1111234566667764 5678889
Q ss_pred CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeeccc
Q 010592 166 AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSE 244 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~ 244 (506)
+||+|+|+.+++|+.++. ..+++++.|+|||||++++............... .....+. ...+..+...-.+.....
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~-~~~~~~~-~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN-NPTHYRE-PRFYTKVFKECHTRDEDG 180 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC-CCCeecC-hHHHHHHHHHheeccCCC
Confidence 999999999998865433 6899999999999999999753321110000000 0000000 112222222222222211
Q ss_pred c-Cce-EEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccCCCCCcCCccccccCCCCccCCCCCCC
Q 010592 245 K-GEI-AVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIPGV 322 (506)
Q Consensus 245 ~-~~~-~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~p~rl~~~p~~~~~~~~~~~ 322 (506)
. ..+ ...-++. .-|..++.+ |...+..= . .+.......+-+.+.. ++. +..|+
T Consensus 181 ~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~-~---~~~~~~~~~~~~~~~~----~~y-~~~~i 235 (475)
T PLN02336 181 NSFELSLVGCKCI---GAYVKNKKN-------------QNQICWLW-Q---KVSSTNDKGFQRFLDN----VQY-KSSGI 235 (475)
T ss_pred CEEEEEEEEeech---hhhhhccCC-------------cceEEEEE-E---eecCCcchhHHHHhhh----hcc-ccccH
Confidence 1 111 1112222 122211111 21111000 0 0001111111111211 110 00111
Q ss_pred -ChhhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--cc
Q 010592 323 -SAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LI 399 (506)
Q Consensus 323 -~~~~f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~ 399 (506)
..+.|-...-.+...+..-..++..+......+|||+|||+|.++..|++.. ..+|+++|.|+.|+..|.++. ..
T Consensus 236 ~~~~~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~ 313 (475)
T PLN02336 236 LRYERVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK 313 (475)
T ss_pred HHHHHHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC
Confidence 1122222222333334343444444434456789999999999998888753 358999999999999997752 21
Q ss_pred ceeccccccCCC--CC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-------------------
Q 010592 400 GIYHDWCEAFST--YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------- 457 (506)
Q Consensus 400 ~~~~~~~~~~~~--~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------- 457 (506)
..+...+.++.. +| ++||+|+|..+|.|. .+.+.+|.|+.|+|||||.++|.|..
T Consensus 314 ~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~ 390 (475)
T PLN02336 314 CSVEFEVADCTKKTYPDNSFDVIYSRDTILHI---QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGY 390 (475)
T ss_pred CceEEEEcCcccCCCCCCCEEEEEECCccccc---CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCC
Confidence 112222233322 33 789999999888854 47789999999999999999997521
Q ss_pred --hhHHHHHHHHhcCCceEE
Q 010592 458 --DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 458 --~~~~~~~~~~~~~~w~~~ 475 (506)
.....+.+++++.+|++.
T Consensus 391 ~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 391 DLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred CCCCHHHHHHHHHHCCCeee
Confidence 134556777888888755
No 3
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.88 E-value=1.9e-23 Score=214.86 Aligned_cols=160 Identities=16% Similarity=0.304 Sum_probs=127.7
Q ss_pred hhhhhhhhHHHHHHHHHHhh-hc----CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccce
Q 010592 327 YQEDSNKWKKHVNAYKKINR-LL----DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI 401 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~~~~-~~----~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~ 401 (506)
|......+.+.+.+|...+. .+ ..+.+|++||+|||+|+||++|.++++.+|.+.+-|.++..+++|.|||+.+.
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~ 166 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAM 166 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchh
Confidence 44555556667777754333 33 55889999999999999999999999999999999999999999999998665
Q ss_pred eccc-cccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC----------hhhHHHHHHHHhcC
Q 010592 402 YHDW-CEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE----------VDEIIKVKKIVGGM 470 (506)
Q Consensus 402 ~~~~-~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~----------~~~~~~~~~~~~~~ 470 (506)
+... ..+||+++++||+|||+..+..+.... ..+|.|++|||||||+++++-+ ....++|++++++|
T Consensus 167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~l 244 (506)
T PF03141_consen 167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSL 244 (506)
T ss_pred hhhhccccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHH
Confidence 5433 468888889999999977776444332 3599999999999999999643 34789999999999
Q ss_pred CceEEEeecCCCCCCCeEEEEEEecc
Q 010592 471 RWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 471 ~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
||+...... .+.|.||+.
T Consensus 245 CW~~va~~~--------~~aIwqKp~ 262 (506)
T PF03141_consen 245 CWKKVAEKG--------DTAIWQKPT 262 (506)
T ss_pred HHHHheeeC--------CEEEEeccC
Confidence 999665322 289999975
No 4
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.74 E-value=1.7e-17 Score=165.11 Aligned_cols=163 Identities=20% Similarity=0.335 Sum_probs=121.2
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChhhHHHHHH
Q 010592 11 RERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYID 90 (506)
Q Consensus 11 ~~~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~ 90 (506)
+--+|++ .||||.+++||.++++....+ +..+++..++..+++.|++ .++ |..-.+...+
T Consensus 17 ~~~~C~~----~h~fd~a~~Gy~~ll~~~~~~-----~~~~~d~~~~~~ar~~fl~--~g~---------y~~l~~~i~~ 76 (272)
T PRK11088 17 NSWICPQ----NHQFDCAKEGYVNLLPVQHKR-----SKDPGDNKEMMQARRAFLD--AGH---------YQPLRDAVAN 76 (272)
T ss_pred CEEEcCC----CCCCccccCceEEeccccccC-----CCCCCcCHHHHHHHHHHHH--CCC---------hHHHHHHHHH
Confidence 3468875 899999999999999866555 4567888999999988876 222 2233344444
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
.+.+.++ ....+|||+|||+|.++..|++. .++++|+|+ .+++.|.++...+.+.+++...+|++
T Consensus 77 ~l~~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~-----~~l~~A~~~~~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 77 LLAERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK-----VAIKYAAKRYPQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHHhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH-----HHHHHHHHhCCCCeEEEeecccCCCc
Confidence 4544443 23357999999999999988764 256676655 55566666666778888899999999
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
+++||+|++.++. ..++++.|+|||||+|++..|...+
T Consensus 149 ~~sfD~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 149 DQSLDAIIRIYAP--------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred CCceeEEEEecCC--------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999999986531 2368999999999999999876643
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=1e-16 Score=154.02 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=86.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceeccccccCCCCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~~~~~~~~p~s~Dlv~~~~~~ 425 (506)
+..+|||+|||||-+|..+++... ...|+++|.|++||.+|++|-. +..++.-++.+|+.++|||+|.+++.|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 567899999999999999998644 5799999999999999999843 223444467888667999999999999
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
. +..+++.+|.||.|||||||.+++-+.
T Consensus 130 r---nv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 130 R---NVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred h---cCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 8 666999999999999999999999654
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=3.2e-16 Score=150.61 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=89.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+.+.+... ++.+|||||||||.++..+++. .++++|+|+.|+..+..+........+.+.++|++.|||+++
T Consensus 41 ~~~i~~~~~~--~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLGIK--PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhCCC--CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 3444554333 5669999999999999999886 489999998887655544433222237889999999999999
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|.+++.+.+ .++...+|+|++|||||||.+++..
T Consensus 119 sFD~vt~~fglrn-v~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 119 SFDAVTISFGLRN-VTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred ccCEEEeeehhhc-CCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 9999999999966 5688999999999999999888853
No 7
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.65 E-value=2.8e-14 Score=153.27 Aligned_cols=297 Identities=13% Similarity=0.091 Sum_probs=160.7
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
..+|||+|||+|.++..++.. .++++|+|+..+..+..+ +...++ .+.+...|... +++.++||+|+|+..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N-~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSN-AIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHH-HHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 358999999999999888753 589999988766544433 333443 34555555432 2345689999997543
Q ss_pred cccCC---------------------Ch----HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHH
Q 010592 177 IPWGA---------------------ND----GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIE 231 (506)
Q Consensus 177 ~~~~~---------------------~~----~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (506)
..... +. ..++.++.++|+|||.+++..... ..+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------------q~~~v~ 278 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------------QEEAVT 278 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------------hHHHHH
Confidence 22110 00 246778889999999999875322 122344
Q ss_pred HHHHhcceeeccccCceEEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccC-CCCCcCCccccccC
Q 010592 232 EIANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVA-GGELKAFPERLYAI 310 (506)
Q Consensus 232 ~l~~~~~w~~~~~~~~~~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~-~~~~~~~p~rl~~~ 310 (506)
.+....+|.. +.+ .+..+.. ..+... ...|+.+.-... |-.+
T Consensus 279 ~~~~~~g~~~------~~~-~~D~~g~----------~R~v~~----------~~~~~~rs~~rr~g~~~---------- 321 (506)
T PRK01544 279 QIFLDHGYNI------ESV-YKDLQGH----------SRVILI----------SPINLNRSYARRIGKSL---------- 321 (506)
T ss_pred HHHHhcCCCc------eEE-EecCCCC----------ceEEEe----------ccccCCcceeccCCCCC----------
Confidence 4433333422 112 2333210 000000 001111100000 0000
Q ss_pred CCCccCCCCCCCChhhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH
Q 010592 311 PPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL 390 (506)
Q Consensus 311 p~~~~~~~~~~~~~~~f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l 390 (506)
+...-.--...|-...-...++. ......+||||||.|.|...++... ...|++++|....-+
T Consensus 322 ------------~~~q~~~~e~~~p~~~i~~eklf----~~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~ 384 (506)
T PRK01544 322 ------------SGVQQNLLDNELPKYLFSKEKLV----NEKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGV 384 (506)
T ss_pred ------------CHHHHHHHHhhhhhhCCCHHHhC----CCCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHH
Confidence 00000000000000000011121 2235679999999999999998753 236899999887655
Q ss_pred HHHHh----cCccceeccccccCC----CCC-CceeEEEEccccc-----cccCcCCHHHHHHHHhhhccCCcEEEE-Ee
Q 010592 391 GVIYE----RGLIGIYHDWCEAFS----TYP-RTYDLIHAHGLFS-----LYKDKCNIEDILLEMDRILRPEGAIII-RD 455 (506)
Q Consensus 391 ~~~~~----rg~~~~~~~~~~~~~----~~p-~s~Dlv~~~~~~~-----~~~~~~~~~~~l~e~~RvLrPgG~~ii-~d 455 (506)
..+.. +|+ .++.-.+.++. .++ +++|-||..+==. |.+.|---+..|.++.|+|||||.+.+ +|
T Consensus 385 ~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 385 ANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred HHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 54433 344 23333344332 245 8999999832222 222222235799999999999999998 56
Q ss_pred ChhhHHHHHHHHhcC-CceE
Q 010592 456 EVDEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 456 ~~~~~~~~~~~~~~~-~w~~ 474 (506)
..++.+.+...+... .|+.
T Consensus 464 ~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 464 IENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred CHHHHHHHHHHHHhCCCeEe
Confidence 666777766664443 4663
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=3.5e-16 Score=151.57 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=75.9
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c--cceecc
Q 010592 331 SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L--IGIYHD 404 (506)
Q Consensus 331 ~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~--~~~~~~ 404 (506)
++.|++.+... +......+|||+|||||.++..|++.-.....|+++|.|++||++|.+|. . +..+..
T Consensus 32 ~~~wr~~~~~~------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 32 DRRWRRKLIKL------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp -----SHHHHH------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHHhc------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 36787755442 22333558999999999999999875334469999999999999999873 1 222222
Q ss_pred ccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 405 WCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 405 ~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
-++++|+-+++||.|.++++|. +.+++..+|.||+|||||||+++|-|-
T Consensus 106 da~~lp~~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 3456665559999999999988 556789999999999999999999664
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=1.5e-15 Score=147.05 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..++++ .++++|+|+.|+..+..+.......++.+.++|++++|+++++||+|+|++.+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 4559999999999999998875 38899999988876666655544447889999999999999999999999998
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+. .++....++|+.|+|||||.+++..
T Consensus 127 rn-~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 127 RN-FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GG--SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hh-hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 66 4678999999999999999998853
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.60 E-value=1.3e-15 Score=125.48 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=73.0
Q ss_pred EeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc---eeccccccCCCCCCceeEEEEccccccccCcCC
Q 010592 357 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG---IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~---~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~ 433 (506)
||+|||+|.++..|++.+ ..+|+++|.+++|++.+.++.... ....-.++++..+++||+|++.++|++. .+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 899999999999999982 379999999999999999985422 2222234555555999999999999865 57
Q ss_pred HHHHHHHHhhhccCCcEEEE
Q 010592 434 IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii 453 (506)
...+|.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 88999999999999999987
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.58 E-value=5.6e-15 Score=139.82 Aligned_cols=153 Identities=22% Similarity=0.270 Sum_probs=107.2
Q ss_pred CCCCcchhhHH-hhcchhhccCCeEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--c
Q 010592 49 NAPYKSLTVEK-AIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--V 125 (506)
Q Consensus 49 ~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v 125 (506)
++++.+.+... -.+.||+.++++-... .+......|+......- ..-.+.+|||||||.|.++..|++.| |
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~LH----~~N~~rl~~i~~~~~~~--~~l~g~~vLDvGCGgG~Lse~mAr~Ga~V 84 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPLH----KINPLRLDYIREVARLR--FDLPGLRVLDVGCGGGILSEPLARLGASV 84 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeeee----eeccchhhhhhhhhhcc--cCCCCCeEEEecCCccHhhHHHHHCCCee
Confidence 44444444333 3668998555433211 11122233332222210 01245689999999999999999985 8
Q ss_pred EEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 126 IAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 126 ~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|+++..+..+. ..|.+.++.+.+....++++....++||+|+|..+++|. +++..+++.+.+++||||.+++++.
T Consensus 85 tgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv-~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 85 TGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV-PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred EEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc-CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 88888887764443 456677777778777788887767899999999999995 7789999999999999999999987
Q ss_pred CCCc
Q 010592 206 PINW 209 (506)
Q Consensus 206 ~~~~ 209 (506)
.-++
T Consensus 163 nrt~ 166 (243)
T COG2227 163 NRTL 166 (243)
T ss_pred ccCH
Confidence 6543
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=4.7e-14 Score=139.41 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=77.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cceeccccccCCCCCCceeEEEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~~~~~~~~~~~~~p~s~Dlv~~ 421 (506)
.+..+|||+|||||.++..|++......+|+++|.|++|++.|.+|.. +.....-.+.+|.-+++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 345689999999999998887741112489999999999999987631 11222223445544489999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.++++. .++..+|.|+.|+|||||+++|.|
T Consensus 152 ~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNV---VDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccC---CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 9888844 478899999999999999999976
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=6.6e-15 Score=121.34 Aligned_cols=90 Identities=26% Similarity=0.424 Sum_probs=71.3
Q ss_pred EEECCCCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 107 LDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
||+|||+|.++..|+++ + ++++|+++ .+++.++++.. ...+...+...+|+++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE-----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H-----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH-----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999999988 4 67777755 44555555432 2448888999999999999999999999776 7
Q ss_pred ChHHHHHHHHHhcCCCeEEEE
Q 010592 182 NDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 182 ~~~~~l~e~~rvLkPGG~li~ 202 (506)
+...+++|+.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 779999999999999999986
No 14
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.51 E-value=1.5e-13 Score=135.90 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHH--H-cCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFAL--E-RGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~--~-~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..++++ .++++|+|+.|+..+..+... . ...++.+.+.|...+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 3458999999999999888764 489999998877655433221 1 1235678888999999999999999999
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++++ +++..+++|+.|+|||||+|++..
T Consensus 153 ~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNV-VDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 998764 678999999999999999999875
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.50 E-value=1.8e-13 Score=140.39 Aligned_cols=123 Identities=20% Similarity=0.378 Sum_probs=95.6
Q ss_pred ChhhHHHHHHHHHhhCCCC---CCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEE
Q 010592 81 FPQGADKYIDQLASVIPIK---NGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVI 152 (506)
Q Consensus 81 f~~~~~~~~~~l~~~l~~~---~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~--~~~~ 152 (506)
+......+++.+.+.+.+. ...+.+|||||||+|.++..|+++ .++++|+++.++..+.. .+.+.+. ++.+
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~ 172 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSF 172 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEE
Confidence 4444456667777776541 134568999999999999999875 58899998876654433 3333443 4778
Q ss_pred EEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 153 GVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 153 ~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+.|...+|+++++||+|++..+++|+ .+...+++++.|+|||||.|++.+.
T Consensus 173 ~~~D~~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 173 QVADALNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEcCcccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888999999999999999999999886 5678999999999999999999753
No 16
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.49 E-value=7.7e-13 Score=123.89 Aligned_cols=153 Identities=12% Similarity=0.165 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~ 407 (506)
..|++++-....+...++. ..+|||+|||+|.++..++... ....|+++|.+++|++.|.++ ++. .++..+.
T Consensus 27 ~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEec
Confidence 4788887665555555543 4679999999999988887521 136899999999999877764 331 1333333
Q ss_pred cCCCC--CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE--eecCCCC
Q 010592 408 AFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM--VDHEDGP 483 (506)
Q Consensus 408 ~~~~~--p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~--~~~~~~~ 483 (506)
++..+ +++||+|.|.. ..+++.++.++.|+|||||.+++-+.......+.++.+.++|.+.. .-+..|-
T Consensus 103 d~~~~~~~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 103 RAEEFGQEEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGL 175 (187)
T ss_pred cHhhCCCCCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCC
Confidence 33333 47999999943 2367889999999999999999999888889999999999998552 2222333
Q ss_pred CCCeEEEEEEec
Q 010592 484 LVPEKILVAVKQ 495 (506)
Q Consensus 484 ~~~~~~l~~~k~ 495 (506)
..+--+.+.||+
T Consensus 176 ~~~~~~~~~~~~ 187 (187)
T PRK00107 176 DGERHLVIIRKK 187 (187)
T ss_pred CCcEEEEEEecC
Confidence 233445566664
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=1.2e-13 Score=136.60 Aligned_cols=125 Identities=14% Similarity=0.234 Sum_probs=91.8
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEE
Q 010592 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG 153 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~ 153 (506)
+...+..+-......+.+.+.+. ++.+|||||||+|..+..|+.. .++++|+++.++..+...... ...+.+.
T Consensus 29 g~~~~~~gg~~~~~~~l~~l~l~--~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~ 104 (263)
T PTZ00098 29 GEDYISSGGIEATTKILSDIELN--ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFE 104 (263)
T ss_pred CCCCCCCCchHHHHHHHHhCCCC--CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEE
Confidence 33444444444456666666544 3458999999999999888764 488888877655443332211 2346777
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 154 VLGTIKMPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..|....|+++++||+|++..+++|+.. +...+++++.++|||||+|+++..
T Consensus 105 ~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 105 ANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7888888999999999999888878653 568999999999999999999864
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=4.3e-13 Score=135.68 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.+|||||||+|.++..|++.+ |+++|+++.++..+... +...+ ..+.+.+.++..+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 45689999999999999998874 88888888766544432 22222 246677788888888888999999999998
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+ .++..+++++.++|||||.+++++...
T Consensus 210 Hv-~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HV-ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hc-CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 85 568999999999999999999987654
No 19
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.47 E-value=4.5e-13 Score=131.70 Aligned_cols=113 Identities=25% Similarity=0.394 Sum_probs=87.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
...+.+.+.++. ....+|||+|||+|.++..|++. .++++|+++.+ ++.++++.....+.+.|...+|+++
T Consensus 29 ~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~-----l~~a~~~~~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPM-----LAQARQKDAADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHH-----HHHHHhhCCCCCEEEcCcccCcCCC
Confidence 334455666643 23458999999999999999876 47888887644 4455554444456778888999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++||+|+++.++ +|..++..++.++.++|||||.|+++++..
T Consensus 102 ~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 102 ATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999877 667888999999999999999999987544
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=1.2e-12 Score=126.97 Aligned_cols=143 Identities=12% Similarity=0.088 Sum_probs=99.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceecccccc---CCCCCCceeEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEA---FSTYPRTYDLIH 420 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~~~---~~~~p~s~Dlv~ 420 (506)
.+......+|||+|||+|.++..|++.-....+|+++|.+++|++.+.++. ....+...+.+ ++..+++||+|+
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 119 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVT 119 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEE
Confidence 344344568999999999999999874212358999999999999887652 11122222233 332238999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------------------------
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------------------ 458 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------------------ 458 (506)
+..++++ ..+...+|.|+.|+|||||++++.+...
T Consensus 120 ~~~~l~~---~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (231)
T TIGR02752 120 IGFGLRN---VPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDF 196 (231)
T ss_pred Eeccccc---CCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHc
Confidence 9888873 4467889999999999999999866321
Q ss_pred -hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 459 -EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 459 -~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
..+++++++++.+++...+..-.+ ....+.+++|
T Consensus 197 ~~~~~l~~~l~~aGf~~~~~~~~~~--g~~~~~~~~~ 231 (231)
T TIGR02752 197 PGMDELAEMFQEAGFKDVEVKSYTG--GVAAMHMGFK 231 (231)
T ss_pred CCHHHHHHHHHHcCCCeeEEEEccc--ceEEEEEEEC
Confidence 125678899999999654433322 2355666665
No 21
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.46 E-value=2.7e-13 Score=134.15 Aligned_cols=148 Identities=16% Similarity=0.241 Sum_probs=103.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHhh--hcCC---------------CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCc
Q 010592 325 ESYQEDSNKWKKHVNAYKKINR--LLDS---------------GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK 387 (506)
Q Consensus 325 ~~f~~d~~~W~~~v~~y~~~~~--~~~~---------------~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~ 387 (506)
..|.+.++|-...+..|+.++. .+.+ .+..+|||+|||+|.++..|+... ..+|+++|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 4566777777777777766654 2333 344589999999999998887642 35899999999
Q ss_pred ccHHHHHhcCc-cceeccccccCCC--CC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-----
Q 010592 388 NTLGVIYERGL-IGIYHDWCEAFST--YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----- 458 (506)
Q Consensus 388 ~~l~~~~~rg~-~~~~~~~~~~~~~--~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----- 458 (506)
+|+..|.++.. ...+...+.++.. ++ ++||+|++..+|.|.. ..+...+|.++.|+|||||+|+|.|...
T Consensus 86 ~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~ 164 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCADKIEN 164 (263)
T ss_pred HHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccccccC
Confidence 99999998732 1122222333322 33 8999999987776432 2367889999999999999999976411
Q ss_pred -----------------hHHHHHHHHhcCCceEE
Q 010592 459 -----------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 459 -----------------~~~~~~~~~~~~~w~~~ 475 (506)
...++.+++++.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 165 WDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 22456667777777744
No 22
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.45 E-value=8e-13 Score=129.93 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=80.1
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEcc
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~ 423 (506)
+..+......+|||+|||+|.++..|.+.+ ..|+++|.+++|++.+.++.. ......-.+.++..+++||+|.++.
T Consensus 35 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 35 LAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL 111 (251)
T ss_pred HHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc
Confidence 334444456789999999999999998865 589999999999999998753 1112111233443448999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.+ ..++..+|.|+.|+|||||.++++.
T Consensus 112 ~l~~---~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 112 AVQW---CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhhh---cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 7763 3478899999999999999999975
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.44 E-value=6.3e-13 Score=134.48 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=91.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceecccc---ccCCCCCCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWC---EAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~---~~~~~~p~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|.++..|+..+ .+|+++|.+++|++.|.++. +...+...+ ++++..+++||+|.|..+|
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4589999999999999998865 58999999999999998762 111222333 3444444899999999999
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCceEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w~~~ 475 (506)
+| ..++..+|.++.|+|||||.++|.+... ..+++..++++.++++.
T Consensus 209 eH---v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 209 EH---VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred Hh---cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 84 4578899999999999999999975211 24678888888888865
Q ss_pred E
Q 010592 476 M 476 (506)
Q Consensus 476 ~ 476 (506)
.
T Consensus 286 ~ 286 (322)
T PLN02396 286 E 286 (322)
T ss_pred E
Confidence 3
No 24
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=2.4e-11 Score=125.22 Aligned_cols=140 Identities=17% Similarity=0.107 Sum_probs=93.9
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc--ceecc-ccccCCCCC-Ccee
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHD-WCEAFSTYP-RTYD 417 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~--~~~~~-~~~~~~~~p-~s~D 417 (506)
..+......+|||+|||+|.++..++++. ....|+++|.|+.|++.|.+. +.. ..+.. +...++..+ .+||
T Consensus 222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fD 300 (378)
T PRK15001 222 QHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFN 300 (378)
T ss_pred HhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEE
Confidence 33433334589999999999999998753 236899999999999988764 111 11111 122233344 6899
Q ss_pred EEEEccccccccCcC--CHHHHHHHHhhhccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010592 418 LIHAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 418 lv~~~~~~~~~~~~~--~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
+|.|+.-|+...... ....++.+..|+|||||.|+|.- ..++..+|++++... .... ...+++++-++
T Consensus 301 lIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~----~~va----~~~kf~vl~a~ 372 (378)
T PRK15001 301 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNC----TTIA----TNNKFVVLKAV 372 (378)
T ss_pred EEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCc----eEEc----cCCCEEEEEEE
Confidence 999988886322111 23578999999999999999963 456777777765422 2322 22478888888
Q ss_pred e
Q 010592 494 K 494 (506)
Q Consensus 494 k 494 (506)
|
T Consensus 373 k 373 (378)
T PRK15001 373 K 373 (378)
T ss_pred e
Confidence 8
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=5.5e-13 Score=126.31 Aligned_cols=119 Identities=13% Similarity=0.229 Sum_probs=86.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.++..|++++ .+|+++|.|+.|++.+.++ ++ ..++..+.++..+ +.+||+|.|..+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecch
Confidence 34679999999999999999976 4899999999999977653 33 1122233444433 4789999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------h---hHHHHHHHHhcCCceEEEe
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------D---EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------~---~~~~~~~~~~~~~w~~~~~ 477 (506)
++.. ..+...++.++.|+|||||++++.... + ..+++.+.+. +|++...
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 6433 345778999999999999996652210 0 3456777776 7886554
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.43 E-value=1.9e-13 Score=116.84 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=78.2
Q ss_pred CceEEeecCcccHHHHHHHh--CCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC---CCCCCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---STYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~--~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~---~~~p~s~Dlv~~~~ 423 (506)
..+|||+|||+|.++.+|++ .+ .+|+++|.++.|++.|.++- ....++..+.++ ...+..||+|.+..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPG---ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 35799999999999999998 55 57999999999999988874 333444445666 33447899999988
Q ss_pred -ccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 424 -LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 -~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+.++.+..+...+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34434434556789999999999999999975
No 27
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.43 E-value=1.5e-12 Score=131.24 Aligned_cols=139 Identities=11% Similarity=0.135 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--c--Cccceeccccc
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--R--GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--r--g~~~~~~~~~~ 407 (506)
..|+..+. |..++..+.....++|||+|||+|.++..|+..+. ..|+++|.|+.|+..+.. + +.....+....
T Consensus 102 ~e~~s~~~-~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 102 SEWRSDIK-WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred HHHHHHHH-HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 34555444 33344444445567899999999999999887653 369999999999875321 1 11111222222
Q ss_pred cCCCCC--CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC------------------------hhhHH
Q 010592 408 AFSTYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEII 461 (506)
Q Consensus 408 ~~~~~p--~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~ 461 (506)
++..+| .+||+|+|.+++. |..++..+|.|+.|+|||||.|+|.+. .....
T Consensus 179 ~ie~lp~~~~FD~V~s~gvL~---H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~ 255 (314)
T TIGR00452 179 GIEQLHELYAFDTVFSMGVLY---HRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVS 255 (314)
T ss_pred CHHHCCCCCCcCEEEEcchhh---ccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHH
Confidence 333333 6899999999998 456888999999999999999998531 01356
Q ss_pred HHHHHHhcCCceEEE
Q 010592 462 KVKKIVGGMRWDTKM 476 (506)
Q Consensus 462 ~~~~~~~~~~w~~~~ 476 (506)
.+...+++.+++...
T Consensus 256 ~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 256 ALKNWLEKVGFENFR 270 (314)
T ss_pred HHHHHHHHCCCeEEE
Confidence 778889999998653
No 28
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=7.3e-13 Score=130.59 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=81.6
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEc
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 422 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~ 422 (506)
.++..+......+|||+|||+|.++..|++.. ...+|+++|.|+.|++.|.++++--...+ .++++ .+++||+|+|+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~~~~~~~d-~~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERGVDARTGD-VRDWK-PKPDTDVVVSN 96 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcCCcEEEcC-hhhCC-CCCCceEEEEe
Confidence 34555555556789999999999999998762 23589999999999999998864222211 12332 23899999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+|++.. +...+|.++.|+|||||+++|.
T Consensus 97 ~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 97 AALQWVP---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhhhhCC---CHHHHHHHHHHhCCCCcEEEEE
Confidence 9998544 6788999999999999999995
No 29
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.42 E-value=3.2e-13 Score=122.68 Aligned_cols=97 Identities=21% Similarity=0.347 Sum_probs=75.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccC
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
....+|||+|||+|.++..|++.+. +++++|.++.|++. +.......+ .+.....+++||+|+|..+|+|..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~-~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD-AQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE-CHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh-hhhhhccccchhhHhhHHHHhhcc-
Confidence 3456899999999999999988763 89999999999888 222122111 011222349999999999999665
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++..+|.+|.|+|||||+++|.+..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 6889999999999999999998764
No 30
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.41 E-value=1.1e-12 Score=124.13 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=93.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCe-----EEEEeecCCCcccHHHHHhcC----ccce--eccc---cccCCCC
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLW-----VMNVVPTLADKNTLGVIYERG----LIGI--YHDW---CEAFSTY 412 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~-----~~~v~~~d~~~~~l~~~~~rg----~~~~--~~~~---~~~~~~~ 412 (506)
.+.....-++|||+||||-.|..+.+.-.. ..+|+..|++++||.++.+|. +... +... +|++|+-
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 455666678999999999999988764222 268999999999999988875 3221 2222 3678744
Q ss_pred CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhH-HHHHHHHhcCCceE
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWDT 474 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~-~~~~~~~~~~~w~~ 474 (506)
+++||....++.+. +..+++.+|.|++|||||||+|.+-+-..+. +.|+.++.+--.++
T Consensus 175 d~s~D~yTiafGIR---N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIR---NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CCcceeEEEeccee---cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 49999999988888 5668899999999999999999997765544 45666655544443
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=1.2e-12 Score=124.05 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=75.9
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..|+++ .|+++|+|+.++..+....+ ..+.. +.+.+.|...++++ ++||+|+|+.+++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKA-AENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL 108 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence 358999999999999999987 48899999877755544333 34443 56666777776664 579999999988665
Q ss_pred CC-ChHHHHHHHHHhcCCCeEEEEE
Q 010592 180 GA-NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 180 ~~-~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ +...+++++.++|||||++++.
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 3379999999999999996553
No 32
>PRK05785 hypothetical protein; Provisional
Probab=99.41 E-value=1.8e-12 Score=125.42 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=73.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~ 432 (506)
..+|||+|||||.++..|++.. ..+|+++|.|++||+.|.++.. .++..++.+|+.+++||+|.++.+++ +..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~lp~~d~sfD~v~~~~~l~---~~~ 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD--KVVGSFEALPFRDKSFDVVMSSFALH---ASD 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc--eEEechhhCCCCCCCEEEEEecChhh---ccC
Confidence 4589999999999999998863 2589999999999999988742 23333466776669999999998887 456
Q ss_pred CHHHHHHHHhhhccCCc
Q 010592 433 NIEDILLEMDRILRPEG 449 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG 449 (506)
+++.+|.||.|||||.+
T Consensus 125 d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CHHHHHHHHHHHhcCce
Confidence 88999999999999953
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.40 E-value=8.1e-13 Score=130.96 Aligned_cols=122 Identities=24% Similarity=0.419 Sum_probs=83.7
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHH----HcCC
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFAL----ERGV 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~----~~~~ 148 (506)
|+.+...+..+....++.+.+.+.+.++ .+|||||||.|.++.+++++ ++.++.+ .+++.+.+.++ +.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCC
Confidence 5666666777778888899999877654 49999999999999999998 6444444 33455555544 4454
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEE
Q 010592 149 P--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 149 ~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~ 203 (506)
. +.+...|..+++. +||.|++..+++|+... ...+++++.++|||||.+++.
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3 5666677776654 89999999999997543 379999999999999999984
No 34
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.40 E-value=2.1e-12 Score=125.26 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=85.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+....+......+.+...|...+++++
T Consensus 35 ~~~l~~l~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQ--AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 4555666443 3459999999999999988764 47899998876655444433222224667778888888888
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++..++++ .++...+++++.++|+|||++++..+
T Consensus 113 ~~fD~V~~~~~l~~-~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRN-VPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEeccccc-CCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99999999988755 56678999999999999999998653
No 35
>PLN02244 tocopherol O-methyltransferase
Probab=99.39 E-value=1.6e-12 Score=133.33 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=76.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc---cCCCCCCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE---AFSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~---~~~~~p~s~Dlv~~~~ 423 (506)
....+|||||||+|.++..|+++. ..+|+++|.++.|++.+.++ |+...+...+. .+++.+++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 345689999999999999998852 36899999999999987664 43222222222 3443448999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.|. .+...+|.|+.|+|||||.|+|.+
T Consensus 195 ~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHM---PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhcc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 88754 467889999999999999999954
No 36
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.39 E-value=1.6e-12 Score=123.14 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=85.0
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHHcCC----CeEEEEeccccCCCCC
Q 010592 99 KNGTVRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 99 ~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~di~~~~~~~a~~~~~----~~~~~~~d~~~lp~~~ 164 (506)
.++.+.++||++||||..+..+.+. +|+++||++.|+..+.. .+.++++ ...+..+|++.|||++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 4456679999999999888877654 48999999988865554 3433433 3678888999999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||+.++++.+..+ .++++.|+|++|+|||||+|.+-.
T Consensus 176 ~s~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CcceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999988664 678999999999999999998653
No 37
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.39 E-value=1.9e-12 Score=122.51 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
+.+|||+|||+|.++..|++++ |+++|+++.++..+.. .+...++++...+.+....+++ ++||+|+|+.+++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 3489999999999999999874 8999999877755443 3445566666666676655654 5799999999887764
Q ss_pred CC-hHHHHHHHHHhcCCCeEEEEE
Q 010592 181 AN-DGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 181 ~~-~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ ...+++++.++|||||++++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 32 378999999999999996654
No 38
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.39 E-value=6.6e-13 Score=120.60 Aligned_cols=95 Identities=27% Similarity=0.537 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
.+.+|||||||+|.++..|++. .++++|+++.++.. ........+....+.++++||+|+|+.+++|+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 4559999999999999999887 47888887755533 22333333344555678899999999999885
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++..+|+++.++|||||+++++++..
T Consensus 92 -~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 92 -PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 468999999999999999999998754
No 39
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.39 E-value=1.4e-12 Score=111.38 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=76.8
Q ss_pred CCEEEEECCCCChhHHHHhh--C--CcEEEecCccchHHHHHHHHHH-cCCCeEEEEecc-ccCCCCCCCeeEEEEcC-c
Q 010592 103 VRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGT-IKMPYASRAFDMAHCSR-C 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~--~--~v~~vdis~~di~~~~~~~a~~-~~~~~~~~~~d~-~~lp~~~~sfDlV~~~~-~ 175 (506)
+.+|||||||+|.++..+++ . .++++|+++.++..+..+.... ...++.+...|. ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 45899999999999999998 4 4899999998776666555332 245678888888 33333 34699999998 4
Q ss_pred ccccC--CChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIPWG--ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~--~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++. ++...+++++.+.|+|||+|++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44333 234789999999999999999975
No 40
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.38 E-value=2.3e-12 Score=127.07 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=81.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+.. .++.+|||||||+|.++..|+++ .++++|+|+.++ +.|++++ +.+.+.|...++ +++
T Consensus 19 ~~ll~~l~~--~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-----~~a~~~~--~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 19 YDLLARVGA--ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-----AAARERG--VDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHHhCCC--CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHhcC--CcEEEcChhhCC-CCC
Confidence 345555543 34469999999999999999875 478888876544 4445544 456667777664 567
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|+.+++| .+++..+++++.++|||||++++..+.
T Consensus 89 ~fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 89 DTDVVVSNAALQW-VPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CceEEEEehhhhh-CCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999855 567899999999999999999998653
No 41
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.38 E-value=5.2e-12 Score=128.44 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=83.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHH-HcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFAL-ERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~-~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+...++. ..+.+|||||||+|.++..++..+ |+++|+|+.++......... ....++.+...++..+|+ ++
T Consensus 112 ~~l~~~l~~--l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSP--LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 445555532 235699999999999999998763 88899887666432221111 113357778888888988 78
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|+|..+++|. .++..+|+++.++|+|||.|++.+
T Consensus 189 ~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 189 AFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999884 678899999999999999999864
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.36 E-value=2.9e-12 Score=128.49 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=86.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~~~~ 427 (506)
.+|||+|||+|.++.+|++.+ .+|+++|.|+.|++.+.++ ++ .+...+.++.. ++++||+|.+..+|++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 479999999999999999876 5899999999999977654 33 12222334433 3589999999988875
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEe---C------h-----hhHHHHHHHHhcCCceEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRD---E------V-----DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d---~------~-----~~~~~~~~~~~~~~w~~~~~ 477 (506)
.. ..++..++.+|.|+|||||+++|.. . . -...+|++++.. |++...
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 43 4467889999999999999966631 1 0 145778888876 887654
No 43
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.36 E-value=3.8e-12 Score=120.35 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=84.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..|++++ ..|+++|.|+.|++.+.++ ++. +...+.++.. ++.+||+|+++.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEEEEecccc
Confidence 4579999999999999999876 5899999999999977554 331 1111222222 347899999988887
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeC-----------h---hhHHHHHHHHhcCCceEEEee
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE-----------V---DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-----------~---~~~~~~~~~~~~~~w~~~~~~ 478 (506)
+.. ..+.+.++.++.|+|||||+++|.+. . -..++|.+++.. |++...+
T Consensus 106 ~~~-~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 106 FLQ-AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred cCC-HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 543 34567899999999999999655311 0 145778887764 8766544
No 44
>PRK05785 hypothetical protein; Provisional
Probab=99.36 E-value=1.9e-12 Score=125.22 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||||||+|.++..|++. .++++|+|+.|+.. |.++. ...+.+...+|+++++||+|+++++++|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~-----a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~- 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM-----NLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHA- 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH-----HHhcc---ceEEechhhCCCCCCCEEEEEecChhhc-
Confidence 458999999999999999876 47888887766544 43332 2456788899999999999999999866
Q ss_pred CCChHHHHHHHHHhcCCCe
Q 010592 180 GANDGRYMIEVDRVLRPGG 198 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG 198 (506)
.+++..+++|+.|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 5678999999999999953
No 45
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.36 E-value=2.6e-12 Score=118.00 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=84.6
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeE-EEEeccccCC-CCCCCeeEEEEcCccccc
Q 010592 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKMP-YASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~-~~~~d~~~lp-~~~~sfDlV~~~~~l~~~ 179 (506)
.|||||||+|..-.++... .|+++|.++.|.+-+....+..+...+. +++++.+++| ++++|+|.|+|.+++..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS- 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS- 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec-
Confidence 5899999999877776633 5889999988776666666666666666 8888999998 89999999999999865
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..++...|+|+.|+|||||.+++..+..
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 6788999999999999999999975433
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=5.6e-12 Score=117.66 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=79.8
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
+.++||+|||.|+.+.+|+++| |+++|+|+..+.. ..+.|.+.++++...+.|.....++ +.||+|++..+++++.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 4589999999999999999996 8999999876644 4567788889998888898777765 6899999988887766
Q ss_pred CCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 181 AND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 181 ~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+. ..+++.|...++|||++++.+
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 688999999999999998853
No 47
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.36 E-value=1e-12 Score=122.42 Aligned_cols=165 Identities=18% Similarity=0.309 Sum_probs=121.3
Q ss_pred hhhhhhhhhhHHHHHH---H------HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh
Q 010592 325 ESYQEDSNKWKKHVNA---Y------KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 395 (506)
Q Consensus 325 ~~f~~d~~~W~~~v~~---y------~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~ 395 (506)
..|..-..++.+..-. | ..++.....+..+++||+|||||-++.+|.+. +-.++++|+|.|||+.|.+
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHh
Confidence 4466666777664432 3 12233566777999999999999999999875 2579999999999999999
Q ss_pred cCccc-eeccccccCC--CCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-h-------------
Q 010592 396 RGLIG-IYHDWCEAFS--TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-D------------- 458 (506)
Q Consensus 396 rg~~~-~~~~~~~~~~--~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~------------- 458 (506)
||+.. .++.-...|. .-++.||+|.+..||..+. +++.++.-..+.|.|||.|+++-.. +
T Consensus 166 Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~Ry 242 (287)
T COG4976 166 KGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRY 242 (287)
T ss_pred ccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhh
Confidence 99732 1221112233 2348999999999999766 6778999999999999999996211 0
Q ss_pred --hHHHHHHHHhcCCceEEEe-----ecCCCCCCCeEEEEEEec
Q 010592 459 --EIIKVKKIVGGMRWDTKMV-----DHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 459 --~~~~~~~~~~~~~w~~~~~-----~~~~~~~~~~~~l~~~k~ 495 (506)
....++..+...+.++..+ ..+.|...+..+++++|+
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 4467889999999997633 233666678888999885
No 48
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.35 E-value=7.9e-12 Score=115.44 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=99.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCC-C-CceeEEEEcc
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTY-P-RTYDLIHAHG 423 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~-p-~s~Dlv~~~~ 423 (506)
.+....++++||+|||.|.|+..|+.+. -.++++|.|+..++.|++|- -...+.....++|.. | ++||||+++-
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 5788889999999999999999999973 78999999999999999983 224444455667654 4 9999999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
++-++.+..++..++..+...|+|||.||+-+-.+ -.+.|.+++...-=++..++-..++ ..|-.|+++
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 193 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNEDCLLAR 193 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCceEeee
Confidence 99887766778899999999999999999954321 3345555555544444443333222 456666664
No 49
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=7.3e-12 Score=123.58 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=81.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+...++. .++.+|||||||+|.++..+++. .++++|+++.++ +.++++...+.+...|...+. +.+
T Consensus 21 ~~ll~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-----~~a~~~~~~~~~~~~d~~~~~-~~~ 92 (258)
T PRK01683 21 RDLLARVPL--ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-----AEARSRLPDCQFVEADIASWQ-PPQ 92 (258)
T ss_pred HHHHhhCCC--cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHhCCCCeEEECchhccC-CCC
Confidence 445555543 33469999999999999999874 488888876544 445554445667777776654 456
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|+.+++ |..+...+++++.++|||||.+++..+.
T Consensus 93 ~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 93 ALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999999999885 4667889999999999999999998654
No 50
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=4e-12 Score=125.37 Aligned_cols=111 Identities=21% Similarity=0.146 Sum_probs=84.1
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YASR 165 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~~~ 165 (506)
.+.+.++ ..+.+|||+|||+|.++..|++.+ |+++|+++.++..+... +.+.+. .+.+.+.+...++ ++++
T Consensus 36 ~~l~~l~---~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~-~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP---PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA-AEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC---CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4444443 234589999999999999999874 88999988777555433 333343 3566777776664 5678
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|..+++| ..++..+++++.++|||||++++....
T Consensus 112 ~fD~V~~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 112 PVDLILFHAVLEW-VADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCEEEehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 9999999999866 467889999999999999999987543
No 51
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.34 E-value=4.7e-13 Score=112.07 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=57.5
Q ss_pred EEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcccccC
Q 010592 107 LDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l~~~~ 180 (506)
||||||+|.++..++++ .++++|+|+.++..+..+.................... ...++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999998776 48999999998855554444433333333333332221 123599999999999886
Q ss_pred CChHHHHHHHHHhcCCCeEE
Q 010592 181 ANDGRYMIEVDRVLRPGGYW 200 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~l 200 (506)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 77899999999999999986
No 52
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=4.1e-12 Score=125.27 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=75.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCC-CCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFS-TYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~-~~p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++ |+...+...+ ++++ ..+++||+|++..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4689999999999999999975 5899999999999998875 3222222212 2233 23489999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|++. .++..+|.++.|+|||||+++|.
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 9854 46788999999999999999884
No 53
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.34 E-value=4.7e-12 Score=114.72 Aligned_cols=102 Identities=22% Similarity=0.300 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCChhHHHHhh-C----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWS-R----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~-~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|++ . .++++|+++.++..+.. .+.+.+. .+.+.+.|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 345899999999999999993 2 48999999877755544 3334444 4888999998877 65 799999999
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.++++ ..++..+++++.++|++||.+++..+.
T Consensus 81 ~~l~~-~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHH-FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGG-TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhh-ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98855 566789999999999999999998654
No 54
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=5.3e-12 Score=123.71 Aligned_cols=125 Identities=19% Similarity=0.338 Sum_probs=92.9
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCC-
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVP- 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~--v~~vdis~~di~~~~~~~a~~~~~~- 149 (506)
|+.....+.......++.+.+.+.+.++. +|||||||.|.++.+++++ + |+++++|+.....+. +.+.+.|.+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~gl~~ 122 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARGLED 122 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcCCCc
Confidence 66666677777778889999999776554 9999999999999999987 4 566666654433222 223344555
Q ss_pred -eEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 150 -AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 -~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+...|...+. +.||-|++..+++|+.... ..+++.+.++|+|||.+++-+
T Consensus 123 ~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 123 NVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 444444544443 4499999999999987644 899999999999999999854
No 55
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.33 E-value=5.4e-12 Score=128.33 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=92.4
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--cCc--cceecccc---ccCCCCCC
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--RGL--IGIYHDWC---EAFSTYPR 414 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--rg~--~~~~~~~~---~~~~~~p~ 414 (506)
..++..+.....++|||||||+|.++..|+..+. ..|+++|.|+.|+..+.. +.. ...++..+ +.++. ++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 3334444444457899999999999999988653 359999999988864322 211 11222222 34444 68
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC------------------------hhhHHHHHHHHhcC
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEIIKVKKIVGGM 470 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~~~~~~~~~~ 470 (506)
+||+|+|..++. |..++..+|.++.|+|||||.++|.+. ......+..++.+.
T Consensus 189 ~FD~V~s~~vl~---H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 189 AFDTVFSMGVLY---HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERA 265 (322)
T ss_pred CcCEEEECChhh---ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHc
Confidence 999999999887 556888999999999999999998531 11346788889999
Q ss_pred CceEEE
Q 010592 471 RWDTKM 476 (506)
Q Consensus 471 ~w~~~~ 476 (506)
+++...
T Consensus 266 GF~~i~ 271 (322)
T PRK15068 266 GFKDVR 271 (322)
T ss_pred CCceEE
Confidence 998553
No 56
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.32 E-value=2.1e-11 Score=112.98 Aligned_cols=190 Identities=18% Similarity=0.263 Sum_probs=122.7
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
.+...++. ....+|.|+|||+|..+..|+++ .++++|-|+ +|+..|+.+.++..|..+|+..+. +...
T Consensus 21 dLla~Vp~--~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~-----~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~ 92 (257)
T COG4106 21 DLLARVPL--ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP-----AMLAKAAQRLPDATFEEADLRTWK-PEQP 92 (257)
T ss_pred HHHhhCCc--cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCH-----HHHHHHHHhCCCCceecccHhhcC-CCCc
Confidence 34445543 34458999999999999999988 366666665 455566777888999988987765 4668
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeeccccC
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~~ 246 (506)
+|+++++-+| ||.++-..+|..+...|.|||.|.+-.|.. +..+ ....|.+.++..-|.....
T Consensus 93 ~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN--------~dep------sH~~mr~~A~~~p~~~~l~-- 155 (257)
T COG4106 93 TDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN--------LDEP------SHRLMRETADEAPFAQELG-- 155 (257)
T ss_pred cchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc--------cCch------hHHHHHHHHhcCchhhhhC--
Confidence 9999999887 888888999999999999999999998765 1111 2334566666655655443
Q ss_pred ceEEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccCCCCCcCCcccc
Q 010592 247 EIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERL 307 (506)
Q Consensus 247 ~~~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~p~rl 307 (506)
+..+.+++....+.|-.- -.+--|.-+-=...+|.+|..--.....+.|..+.+|=++|
T Consensus 156 ~~~~~r~~v~s~a~Yy~l--La~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L 214 (257)
T COG4106 156 GRGLTRAPLPSPAAYYEL--LAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRL 214 (257)
T ss_pred ccccccCCCCCHHHHHHH--hCcccceeeeeeeeccccCCCccchhhheeccccceecccc
Confidence 333357777656666410 11223432221223454543321111145566666664444
No 57
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.31 E-value=2.2e-11 Score=122.84 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=80.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHH-HHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQV-QFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~-~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+...+.. .++++|||||||+|.++..++..+ ++++|.|+.++..... +........+.+...+...+|.. .
T Consensus 111 ~~~l~~l~~--~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~ 187 (314)
T TIGR00452 111 DRVLPHLSP--LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-Y 187 (314)
T ss_pred HHHHHhcCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-C
Confidence 445555532 345699999999999988887763 7888888766543211 11111123455666777788764 4
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|+|+.+++|+ .++..+|++++++|||||.|++.+
T Consensus 188 ~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 188 AFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 89999999999885 678899999999999999999864
No 58
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.31 E-value=1.1e-12 Score=110.33 Aligned_cols=92 Identities=28% Similarity=0.482 Sum_probs=69.8
Q ss_pred EEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCc-cc
Q 010592 106 ALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC-LI 177 (506)
Q Consensus 106 VLDiGCG~G~~~~~L~~~-------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~-l~ 177 (506)
|||+|||+|..+..+.+. .++++|+++.++..+.... .+.+.++.+.+.|..++++.+++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999888753 4788888776665444333 23456899999999999988889999999655 77
Q ss_pred ccCCCh-HHHHHHHHHhcCCCe
Q 010592 178 PWGAND-GRYMIEVDRVLRPGG 198 (506)
Q Consensus 178 ~~~~~~-~~~l~e~~rvLkPGG 198 (506)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 755433 799999999999998
No 59
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.31 E-value=5.8e-12 Score=124.89 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccceeccccccCCC
Q 010592 336 KHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWCEAFST 411 (506)
Q Consensus 336 ~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~~~~~~~~~~~~ 411 (506)
...+.+..++..+...+..+|||+|||.|+++.+++++- ..+|+++.+|++..+.|.+ +|+...+.-.+.++..
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 345556666665566667799999999999999999871 3689999999999997765 4664444444567767
Q ss_pred CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++.+||.|.+-.+|.|.. +.+.+..+.+++|+|||||.+++
T Consensus 124 ~~~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp ---S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEE
T ss_pred cCCCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEE
Confidence 778999999999999876 35778899999999999999998
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=1.9e-11 Score=131.30 Aligned_cols=112 Identities=18% Similarity=0.306 Sum_probs=85.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
+.+.+.+.. .++.+|||||||+|..+..|++. .++++|+|+.++..+..+ +......+.+.+.|...+++++++
T Consensus 256 e~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLDL--KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcCC--CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCC
Confidence 344455543 34568999999999999888875 488898887655443322 222234567888888888888889
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|+|..+++|+ .++..+++++.|+|||||.|++...
T Consensus 333 fD~I~s~~~l~h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 333 FDVIYSRDTILHI-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCccccc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999885 5689999999999999999999864
No 61
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.30 E-value=5.4e-12 Score=123.80 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|..+..+++. .++++|+|+.++..+..+..... ..++.+.+.++..+|++ .+|+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4458999999999998887751 58999999988866665554322 12467777888777764 499999999
Q ss_pred cccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 175 CLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++++.++. ..+++++.++|||||.|+++.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 987765433 689999999999999999975
No 62
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.30 E-value=1.3e-11 Score=121.87 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=79.6
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHA 421 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~ 421 (506)
++..+...+..+|||+|||+|.++..|++.. ...+|+++|.++.|++.|.++.- .+.....++..+ +++||+|++
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~--~~~~~~~d~~~~~~~~~fD~v~~ 99 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP--DCQFVEADIASWQPPQALDLIFA 99 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC--CCeEEECchhccCCCCCccEEEE
Confidence 3444444556789999999999999998752 23589999999999999988731 111112333322 379999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.+|++.. +...+|.++.|+|||||.+++.-
T Consensus 100 ~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 100 NASLQWLP---DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccChhhCC---CHHHHHHHHHHhcCCCcEEEEEC
Confidence 99998544 67889999999999999999963
No 63
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=8.7e-13 Score=110.46 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred EeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--c----ceeccccccCCCC-C-CceeEEEEccccccc
Q 010592 357 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--I----GIYHDWCEAFSTY-P-RTYDLIHAHGLFSLY 428 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~----~~~~~~~~~~~~~-p-~s~Dlv~~~~~~~~~ 428 (506)
||+|||+|.++..+.+.. ...+++++|.|+.|++.+++|-- . .....-..+.... + ++||+|++.++|+|.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998763 45899999999999977766621 1 1111111222222 2 599999999999966
Q ss_pred cCcCCHHHHHHHHhhhccCCcEE
Q 010592 429 KDKCNIEDILLEMDRILRPEGAI 451 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ 451 (506)
.++..+|..+.++|||||.|
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 68899999999999999986
No 64
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.29 E-value=1e-11 Score=129.14 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=84.4
Q ss_pred HHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCcee
Q 010592 338 VNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYD 417 (506)
Q Consensus 338 v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D 417 (506)
...+..++..+...+..+|||+|||+|+++..+++.. ...|+++|.|++|++.|.++.--..+...+.++...+++||
T Consensus 153 ~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD 230 (383)
T PRK11705 153 EAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFD 230 (383)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCC
Confidence 3344444444444455689999999999999998752 24899999999999999887421112223344444568999
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|++..+|.|.. ..+++.++.++.|+|||||+++|.+
T Consensus 231 ~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 231 RIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999998888654 2356789999999999999999953
No 65
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.29 E-value=1.4e-11 Score=123.58 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=77.3
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
.+|||+|||+|.++.+|++. .|+++|+++.++..+. +.+...++++.+.+.|....++ +++||+|+++.+++++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 38999999999999999987 4889999887665433 4455566677777777766555 678999999998877543
Q ss_pred -ChHHHHHHHHHhcCCCeEEEEE
Q 010592 182 -NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 182 -~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+...+++++.++|+|||++++.
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 2378999999999999997764
No 66
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.29 E-value=1.6e-11 Score=119.02 Aligned_cols=99 Identities=23% Similarity=0.263 Sum_probs=78.6
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|.++..+++. .++++|+++.++ +.+.++. ....+...|...+++++++||+|+++.+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-----AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-----HHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 458999999999999999876 368888866444 3333322 245677788888888889999999999885
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ ..++..++.++.++|+|||.+++..+..
T Consensus 110 ~-~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 110 W-CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred h-ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 5 5678899999999999999999987544
No 67
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.29 E-value=1.2e-11 Score=114.10 Aligned_cols=108 Identities=25% Similarity=0.332 Sum_probs=82.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCe
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-PYASRAF 167 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l-p~~~~sf 167 (506)
+.|++++ . ++.+|||+|||.|.+..+|.+. ++.+.++ +++.+.+..+.++|+++.....+. .| .|++++|
T Consensus 5 ~~I~~~I--~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sF 76 (193)
T PF07021_consen 5 QIIAEWI--E--PGSRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSF 76 (193)
T ss_pred HHHHHHc--C--CCCEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCc
Confidence 4567777 2 3459999999999999999884 6666665 555677788888998765543333 44 4899999
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010592 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
|.|+++.++.+. .++..+|+|+.|+ |...+++.|+..+
T Consensus 77 D~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVsFPNFg~ 114 (193)
T PF07021_consen 77 DYVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVSFPNFGH 114 (193)
T ss_pred cEEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEEecChHH
Confidence 999999999774 5688999999777 6688888877743
No 68
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.28 E-value=3.8e-11 Score=122.08 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=90.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCCCCCceeEEEEcccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
..+|||+|||+|.++..+++.. ...+|+++|.+++|++.|.++.. +...+.-.++++..+++||+|.++.++++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~- 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW- 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-
Confidence 4589999999999988887631 12589999999999999988632 122222223344444899999998888844
Q ss_pred CcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------hhHHHHHHHHhcCCceEEEee
Q 010592 430 DKCNIEDILLEMDRILRPEGAIIIRDEV-----------------DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------~~~~~~~~~~~~~~w~~~~~~ 478 (506)
.+.+.+|.|+.|+|||||.++|.+.. ...+++.+++++.+|+...+.
T Consensus 192 --~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 192 --PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred --CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 46778999999999999999886421 135788899999999865443
No 69
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.28 E-value=5.5e-12 Score=123.74 Aligned_cols=103 Identities=7% Similarity=0.081 Sum_probs=78.6
Q ss_pred CceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|..+..|++. .....+|+++|.|++|++.|.++- ....+...+.++..+| ..+|+|.++.+|+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 457999999999998888652 112368999999999999998862 2223333455666655 6799999988887
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+.. ..+...++.+|.|+|||||.|++.|.
T Consensus 137 ~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 137 FLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 654 23457899999999999999999874
No 70
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.28 E-value=5.2e-12 Score=114.45 Aligned_cols=101 Identities=20% Similarity=0.312 Sum_probs=78.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC----CceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP----RTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p----~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.-....+++++|.+++|++.|.++ ++. .++..++++..++ +.||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcCc
Confidence 45799999999999999994211135799999999999999884 332 3444445555544 78999999988
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+. +..++..+|+++.|.|||||.+++.+..
T Consensus 83 l~---~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LH---HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GG---GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hh---hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 86 4457788999999999999999998876
No 71
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.28 E-value=6e-11 Score=110.75 Aligned_cols=140 Identities=14% Similarity=0.223 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~ 407 (506)
..|++++..-..+...+. ..+|||+|||+|.++..|+... ...+|+++|.+++|++.+.+. |+ ..+...+.
T Consensus 25 ~~~~~~~~d~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD---GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEec
Confidence 466666654433333343 4689999999999888876532 125799999999998866543 43 12333334
Q ss_pred cCCCC--CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhc---CCceEEEeecCCC
Q 010592 408 AFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG---MRWDTKMVDHEDG 482 (506)
Q Consensus 408 ~~~~~--p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~---~~w~~~~~~~~~~ 482 (506)
++..+ +++||+|.|.. + .+++.++.++.|+|||||.+++.+......++..+.+. .+.+..-.+.-++
T Consensus 100 d~~~~~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 100 RAEDFQHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred chhhccccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 44443 38999999854 2 35678999999999999999998877766666666555 5666444443344
Q ss_pred C
Q 010592 483 P 483 (506)
Q Consensus 483 ~ 483 (506)
|
T Consensus 173 ~ 173 (181)
T TIGR00138 173 P 173 (181)
T ss_pred C
Confidence 4
No 72
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.28 E-value=2.5e-11 Score=115.47 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+.+|||||||+|.++..|++. .++++|+|+.++ +.|+++.....+.+.++.. |+++++||+|+++.+++|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-----~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-----EKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-----HHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 458999999999999998765 377887776544 4555443445566677766 888999999999999998
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 179 WGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.++. ..+++++.|++ ++++++..
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 75433 78999999997 56777754
No 73
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.27 E-value=2.6e-11 Score=120.71 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|..+..++.. .++++|+++.++..+..... ..+. .+.+...+...+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~-~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR-KAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH-HcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 4569999999999877665543 38899998877655543332 3333 466777888889998889999999988
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ ..+...+++++.++|||||+|+++.
T Consensus 156 ~~~-~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INL-SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 755 5667899999999999999999975
No 74
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.27 E-value=1.9e-11 Score=118.01 Aligned_cols=118 Identities=16% Similarity=0.260 Sum_probs=89.2
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~~~~~~~~ 428 (506)
+|||+|||+|.++..+++.. ...+|+++|.|++++..+.++ |+...+.....++.. ++++||+|++..+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 69999999999999998752 125799999999999988875 332222222333322 35899999999999855
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEE
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~ 476 (506)
.+...+|.++.|+|||||++++.+... ...++.+++.+.++++..
T Consensus 81 ---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 81 ---KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred ---CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 457889999999999999999976421 356788888999999653
No 75
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.27 E-value=4.9e-12 Score=119.92 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=78.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceec--ccc---ccCCCCCCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH--DWC---EAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~--~~~---~~~~~~p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||-|.++..|+..| .+|+++|+++.++++|..+.....+. +.+ |++..--.+||+|.|..|++
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE- 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE- 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH-
Confidence 4579999999999999999988 79999999999999998664322111 212 22222226999999999998
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
|..+++.++.+..+.+||||.+++++.+
T Consensus 136 --Hv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 136 --HVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred --ccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 5668888999999999999999997653
No 76
>PRK08317 hypothetical protein; Provisional
Probab=99.27 E-value=4.7e-11 Score=115.62 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=87.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
..+.+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+... .........+...|...+
T Consensus 5 ~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLAVQ--PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccC
Confidence 34445566666543 3459999999999999988764 478888877555433322 112234567777788888
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++++||+|++..+++|+ .++..+++++.++|||||++++..+.
T Consensus 82 ~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8888999999999998775 56889999999999999999998653
No 77
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.27 E-value=1e-10 Score=109.54 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=84.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|..+..++.. .++++|+++.++..+... +.+.+. ++.+...+...++. .++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 568999999999988888753 589999988777555433 333444 36777778777776 679999999642
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeec
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 242 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~ 242 (506)
.+...+++++.++|||||++++..... ....++++++..+|...
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEe
Confidence 345789999999999999999986433 12236666666677643
No 78
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.26 E-value=5.4e-11 Score=118.44 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=73.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCe--EEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLW--VMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~--~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~ 428 (506)
...+|||+|||+|.++..|++.... ...|+++|.|++|+..|.++.. +.....-.+.+|+-+++||+|.+.. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~--~-- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIY--A-- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEec--C--
Confidence 3467999999999999998764211 1478999999999999988742 2222211234554458999999732 1
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHH
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKI 466 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~ 466 (506)
+..+.|+.|+|||||+|++..... ...+++.+
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 125789999999999999976543 33445444
No 79
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.26 E-value=2.2e-11 Score=118.88 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..++++ .++++|+++.++..+..+..... ..++.+...|...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 4458999999999999888763 48899998877765554433211 23567788888888765 489999999
Q ss_pred cccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 175 CLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++++.+ +...+++++.++|||||.|+++.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9877543 237899999999999999999864
No 80
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.26 E-value=2e-11 Score=116.77 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=75.9
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH------------HcCCCeEEEEeccccCCCC-CCCe
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL------------ERGVPAVIGVLGTIKMPYA-SRAF 167 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~------------~~~~~~~~~~~d~~~lp~~-~~sf 167 (506)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .++..+.+.++|...++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 4589999999999999999995 88899988666533221100 0233567778888777643 4579
Q ss_pred eEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
|.|+...+++|+.++. ..+++.+.++|||||++++.
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9999988888876555 67999999999999986665
No 81
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.25 E-value=1.2e-11 Score=120.83 Aligned_cols=104 Identities=8% Similarity=0.090 Sum_probs=78.6
Q ss_pred CCceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|.++..|++.. ....+++++|.|++|+..|.++ +....+...+.++..++ ..+|+|.++.++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 34579999999999998887641 1236899999999999999876 21112233345665555 679999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++.. ..+...+|.++.|+|||||.++|.|.
T Consensus 133 ~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 133 QFLP-PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7543 22467899999999999999999875
No 82
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.23 E-value=2.8e-11 Score=115.59 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=85.7
Q ss_pred hcchhhccCCeEEcCCCCCCChhhHHHHHHHHHhhCCC-CCC----CCCEEEEECCCCChhHHHHhhCC--cEEEecCcc
Q 010592 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI-KNG----TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPR 133 (506)
Q Consensus 61 ~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~l~~-~~~----~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~ 133 (506)
...||+.++.+-.++.-.. .......+-+.+..+. .++ -+++|||+|||+|.++..|++.+ |+++|++..
T Consensus 46 a~~wwd~~g~~~~Lh~mn~---~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~ 122 (282)
T KOG1270|consen 46 AFTWWDEEGVRHPLHSMNQ---TRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDD 122 (282)
T ss_pred cccccccccchhhhhhccc---hhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEeecccHH
Confidence 3468886665554443222 1112222334444422 122 14789999999999999999985 666666654
Q ss_pred chHHHHHHHHHHc--CCC----eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 134 DSHEAQVQFALER--GVP----AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 134 di~~~~~~~a~~~--~~~----~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++..+........ ..+ ..+.+.+.+.+ .+.||.|+|+.+++|. .++..++..+.+.|||||.+++++-..
T Consensus 123 ~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV-~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 123 MVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHV-KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHH-hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 4433332211100 001 11222222322 3459999999999994 678999999999999999999987443
No 83
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.23 E-value=1.3e-10 Score=108.39 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=89.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccc-eeccccccCC-CCCCceeEEEEccccccccC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIG-IYHDWCEAFS-TYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~-~~~~~~~~~~-~~p~s~Dlv~~~~~~~~~~~ 430 (506)
.+|||+|||+|.++..++..+. .|+++|.+++|++.+.++- ..+ .....+.++. ..+++||+|.++.-+.+...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence 5699999999999999998753 8999999999999887751 000 1111122322 23479999999877653321
Q ss_pred c------------------CCHHHHHHHHhhhccCCcEEEEEeChhh-HHHHHHHHhcCCceEEEeecC
Q 010592 431 K------------------CNIEDILLEMDRILRPEGAIIIRDEVDE-IIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 431 ~------------------~~~~~~l~e~~RvLrPgG~~ii~d~~~~-~~~~~~~~~~~~w~~~~~~~~ 480 (506)
. ..++.+|.++.|+|||||.+++.+.... ..++..++++.+|...+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe
Confidence 1 1146789999999999999999776543 678888899999997765443
No 84
>PRK08317 hypothetical protein; Provisional
Probab=99.23 E-value=5.7e-11 Score=115.02 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=79.8
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--Cccceecccccc---CCCCCCceeEEE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--GLIGIYHDWCEA---FSTYPRTYDLIH 420 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r--g~~~~~~~~~~~---~~~~p~s~Dlv~ 420 (506)
..+......+|||+|||+|.++..+++......+++++|.+++++..+.++ +....+.....+ ++..+.+||+|+
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 92 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVR 92 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEE
Confidence 344445567899999999999999987421235899999999999999887 221222222233 332338999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+..+|.+. .++..++.++.++|||||++++.+
T Consensus 93 ~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 93 SDRVLQHL---EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred Eechhhcc---CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 99998844 467889999999999999999865
No 85
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.22 E-value=6.7e-11 Score=120.28 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+..+.. ...+.+...|...+++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 3458999999999988888763 48889998766654443321 1235667788888999999999999999887
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++ +++..+++++.|+|||||.+++..+
T Consensus 190 ~~-~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 190 YW-PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hC-CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 75 5678899999999999999988653
No 86
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.21 E-value=8.9e-11 Score=111.65 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc-ccCC--CCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMP--YASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~-~~lp--~~~~sfDlV~~~~ 174 (506)
.+.+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+.+.|+ ..++ +++++||+|++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 3458999999999999998764 4899999997776555443332223467788887 6666 7788999999976
Q ss_pred cccccCC--------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 175 CLIPWGA--------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l~~~~~--------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. +|.. ....+++++.++|||||+|+++.+..
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 54 3322 13678999999999999999987544
No 87
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.21 E-value=2.9e-10 Score=109.10 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=76.7
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceecccccc---CCCCCCceeEEEEcccc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEA---FSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~---~~~~p~s~Dlv~~~~~~ 425 (506)
..+..+|||+|||+|.++..+++......+++++|.++.++..+.++.. ....+..+.+ ++..+++||+|+++.++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 3356689999999999999998764212479999999999998887642 1111112233 33223789999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+ +..++..+|+++.++|||||++++.+
T Consensus 117 ~---~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 R---NVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred C---CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 7 44578899999999999999999854
No 88
>PRK06202 hypothetical protein; Provisional
Probab=99.21 E-value=1.4e-10 Score=112.77 Aligned_cols=104 Identities=12% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCCCceEEeecCcccHHHHHHHhC---CCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCCCCCceeEEEEc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDLIHAH 422 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~---~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~~p~s~Dlv~~~ 422 (506)
...+..+|||+|||+|.++..|++. .....+|+++|.+++|++.|.++.. +.....-++.++..+++||+|.|+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 3345668999999999998888641 1223689999999999999988732 111111234555545899999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+|+|..+. ++..+|.||.|++| |.++|.|
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 999866532 35689999999999 5666654
No 89
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.20 E-value=6.8e-11 Score=110.37 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=85.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH----HHHhcCccceeccccccCCC--CCCceeEEEEcc
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCEAFST--YPRTYDLIHAHG 423 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~~~~~~--~p~s~Dlv~~~~ 423 (506)
.-+..++||+|||.|+-+.+|+++| .+|+++|.|+..++ +|.++++. ++.++.++.. +++.||+|.+..
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~ 102 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTV 102 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEES
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEE
Confidence 3345589999999999999999998 68999999987776 34445552 3333455544 348999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEe-----Ch------h---hHHHHHHHHhcCCceEEEe
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-----EV------D---EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-----~~------~---~~~~~~~~~~~~~w~~~~~ 477 (506)
+|.++. +..++.++..|..-|+|||+++|.. .. + ...+|...+. .|++...
T Consensus 103 v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 103 VFMFLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp SGGGS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred EeccCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 887665 6688999999999999999998831 11 1 3367888777 5997643
No 90
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=4.8e-11 Score=117.04 Aligned_cols=129 Identities=18% Similarity=0.284 Sum_probs=96.0
Q ss_pred Chhhhhhhhh-hhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cC
Q 010592 323 SAESYQEDSN-KWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RG 397 (506)
Q Consensus 323 ~~~~f~~d~~-~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg 397 (506)
+..+|+..+. .=......+..++..+.-.+..+|||+|||.|+++.++++.- ..+|+++++|++++..+.+ +|
T Consensus 42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g 119 (283)
T COG2230 42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG 119 (283)
T ss_pred eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC
Confidence 3444444442 223344455555555666667889999999999999999861 3699999999999987766 46
Q ss_pred ccceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 398 LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 398 ~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+...++-.-++...+++.||-|.|..+|+|... ....+.+.-++++|+|||.+++-
T Consensus 120 l~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 120 LEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred CCcccEEEeccccccccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 653444344566667777999999999998873 46788999999999999999983
No 91
>PRK06922 hypothetical protein; Provisional
Probab=99.20 E-value=6.6e-11 Score=127.48 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=79.5
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
+.+|||||||+|.++..+++. .++++|+|+.++..+..+. ...+.+..+.++|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 458999999999998888764 5899999887776554332 233455667777887787 788999999999888
Q ss_pred cccC------------CChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWG------------ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~------------~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++. .+...+|+++.++|||||.+++..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7652 134789999999999999999975
No 92
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.20 E-value=1.4e-10 Score=113.99 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=93.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~ 432 (506)
..+|||+|||+|.++.+++..+. ..|+++|.++.|++.|.++.-.....+. -.+..-+.+||+|+|+... .
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~-~~~~~~~~~fD~Vvani~~------~ 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELN-VYLPQGDLKADVIVANILA------N 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCce-EEEccCCCCcCEEEEcCcH------H
Confidence 46899999999999888877653 3599999999999998876311111000 0111111379999985322 2
Q ss_pred CHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 433 NIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.+..++.++.|+|||||++++++... ..+.+.+.+++.+|++...... +.+..++++|+
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~~ 250 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKKK 250 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEeC
Confidence 34678999999999999999997654 5677888899999997654443 36888888874
No 93
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.19 E-value=5.9e-11 Score=117.48 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=88.2
Q ss_pred hhhhhhhhhhhHHHHHHHHH-HhhhcCCCCCceEEeecCcccH----HHHHHHhCC----CeEEEEeecCCCcccHHHHH
Q 010592 324 AESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGG----FAAAIQSSK----LWVMNVVPTLADKNTLGVIY 394 (506)
Q Consensus 324 ~~~f~~d~~~W~~~v~~y~~-~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~~~----~~~~~v~~~d~~~~~l~~~~ 394 (506)
...|-.|...|+........ +......++..+|+|+|||||. +|..|++.. .+...|+++|+|+.||+.|.
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 44577777888876554322 2222222334689999999996 454554421 23578999999999999998
Q ss_pred hcCc--------c----------------------ceeccccccCCC--C-CCceeEEEEccccccccCcCCHHHHHHHH
Q 010592 395 ERGL--------I----------------------GIYHDWCEAFST--Y-PRTYDLIHAHGLFSLYKDKCNIEDILLEM 441 (506)
Q Consensus 395 ~rg~--------~----------------------~~~~~~~~~~~~--~-p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~ 441 (506)
+.-. . ..+.....++.. + ++.||+|+|.++|.+.. ..+...++.++
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l 228 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRF 228 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHH
Confidence 6411 0 011111222222 2 38999999999998553 23456899999
Q ss_pred hhhccCCcEEEEEeCh
Q 010592 442 DRILRPEGAIIIRDEV 457 (506)
Q Consensus 442 ~RvLrPgG~~ii~d~~ 457 (506)
+|+|||||+|+|....
T Consensus 229 ~~~L~pGG~L~lg~~E 244 (264)
T smart00138 229 AEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHhCCCeEEEEECcc
Confidence 9999999999996554
No 94
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.19 E-value=6.5e-11 Score=117.79 Aligned_cols=121 Identities=15% Similarity=0.071 Sum_probs=85.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccc---cCCCCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCE---AFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~---~~~~~p~s~Dlv~~~~~~ 425 (506)
...+|||+|||+|..+..++..-....+|+++|.+++|++.|+++.- +..+..... .++..+++||+|+++.++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 35689999999998766555421112479999999999999987521 111222223 333334799999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------------hhHHHHHHHHhcCCceEE
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
++ ..+...+|.|+.|+|||||+|+|.|.. ....++.++++..++...
T Consensus 157 ~~---~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 157 NL---SPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred cC---CCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 74 346788999999999999999997531 023467777888888754
No 95
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.19 E-value=3.2e-10 Score=106.40 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=87.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCCCceeEEEEc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYPRTYDLIHAH 422 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p~s~Dlv~~~ 422 (506)
+......+|||+|||+|.++..++... ...+|+++|.++.|++.+.++ ++ ..+...+.+.. .+++.||+|++.
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIG 104 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEEC
Confidence 333345689999999999999887753 235899999999999988763 22 12222233332 245789999985
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEe-ChhhHHHHHHHHhcCCce
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w~ 473 (506)
... ..+..++.++.++|||||++++.+ ..+...++.+++++.+|.
T Consensus 105 ~~~------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 105 GSG------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred CCc------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 443 246779999999999999999976 445677888899999985
No 96
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.19 E-value=9.8e-12 Score=104.57 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=67.9
Q ss_pred EEeecCcccHHHHHHHhCC--CeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCC---CceeEEEEccc-ccc
Q 010592 356 IMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYP---RTYDLIHAHGL-FSL 427 (506)
Q Consensus 356 vLD~gcG~G~~~~~l~~~~--~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p---~s~Dlv~~~~~-~~~ 427 (506)
|||+|||+|..+..+.+.- .....++++|.+++||..+.++.- -..++..+.++..++ ++||+|.|+.. |.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998642 112689999999999999998862 113333455555544 79999999554 776
Q ss_pred ccCcCCHHHHHHHHhhhccCCc
Q 010592 428 YKDKCNIEDILLEMDRILRPEG 449 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG 449 (506)
.+...++.+|.++.++|||||
T Consensus 81 -~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 -LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -SSHHHHHHHHHHHHHTEEEEE
T ss_pred -CCHHHHHHHHHHHHHHhCCCC
Confidence 445578899999999999998
No 97
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.19 E-value=4.4e-10 Score=106.52 Aligned_cols=150 Identities=14% Similarity=0.192 Sum_probs=99.7
Q ss_pred CCChhhhhh--hhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--
Q 010592 321 GVSAESYQE--DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-- 396 (506)
Q Consensus 321 ~~~~~~f~~--d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-- 396 (506)
|+.-..|.. +...++..++.- .+..+......+|||+|||+|.++..++..-....+|+++|.++.|++.+.++
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~ 86 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRAL--ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE 86 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHH--HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 444555654 335676666431 22334444556899999999999887765311235899999999999987654
Q ss_pred --CccceeccccccCC----CCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhc
Q 010592 397 --GLIGIYHDWCEAFS----TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGG 469 (506)
Q Consensus 397 --g~~~~~~~~~~~~~----~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~ 469 (506)
|+...+...+.++. .++..||.|++.. ....+..+|.++.|+|||||++++. -..+.+.++...++.
T Consensus 87 ~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 87 KFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred HhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 32222222233332 2347899999843 1236788999999999999999983 344566778888888
Q ss_pred CCceEEEee
Q 010592 470 MRWDTKMVD 478 (506)
Q Consensus 470 ~~w~~~~~~ 478 (506)
++++..+.+
T Consensus 161 ~g~~~~~~~ 169 (198)
T PRK00377 161 IGFNLEITE 169 (198)
T ss_pred cCCCeEEEE
Confidence 888755443
No 98
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.19 E-value=5.4e-10 Score=125.02 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=86.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccC----CCCCCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAF----STYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~----~~~p~s~Dlv~~~~ 423 (506)
.++|||+|||+|+|+.+++..|. ..|+++|.|+.+++.|.+. |+. ..+...+.+. ..+.++||+|.++-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999998753 3699999999999988774 221 1122223332 12357899999952
Q ss_pred -ccccccC-------cCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC
Q 010592 424 -LFSLYKD-------KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 424 -~~~~~~~-------~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.|..... ..+...++....++|+|||.+++...........+.+...++.+.++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAK 681 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecC
Confidence 1111100 11235688888999999999999765554444567778889998876543
No 99
>PRK04266 fibrillarin; Provisional
Probab=99.18 E-value=3.2e-10 Score=109.40 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=86.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----C-ccceeccccccC--CCCCCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G-LIGIYHDWCEAF--STYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g-~~~~~~~~~~~~--~~~p~s~Dlv~~~~ 423 (506)
.+..+|||+|||+|.++..|++... ...|+++|.++.|++.+.++ . +.....+..+.. ..++.+||+|.+..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 3446899999999999999988522 34799999999998854333 1 111221111100 11347799998621
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEE------EeChh----hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIII------RDEVD----EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii------~d~~~----~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
. +......+|.|+.|+|||||.++| .|... ..++..+.+++.+++......-..-..+.+.++++
T Consensus 150 ~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 150 A-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred C-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 1 111223468999999999999999 34321 22334577888899855332221111357788877
Q ss_pred ec
Q 010592 494 KQ 495 (506)
Q Consensus 494 k~ 495 (506)
|+
T Consensus 225 ~~ 226 (226)
T PRK04266 225 KK 226 (226)
T ss_pred cC
Confidence 64
No 100
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.18 E-value=6.6e-11 Score=112.54 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=87.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCC-C-CCceeEEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FST-Y-PRTYDLIHA 421 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~-~-p~s~Dlv~~ 421 (506)
...+|||+|||+|.++..|++.. ...+|+++|.+++|++.|.++ ++ ..+...+.+ ++. + +++||+|.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEE
Confidence 35689999999999999997742 235899999999999988764 22 112222233 331 4 489999998
Q ss_pred cccccccc-----CcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhcCCceEEE
Q 010592 422 HGLFSLYK-----DKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 422 ~~~~~~~~-----~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
........ .+.....+|.++.|+|||||.|+|. +.......+.+.+.+.+|.+..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 54332111 1123578999999999999999996 5556778888888889998663
No 101
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.18 E-value=4.8e-11 Score=113.97 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=80.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c----cc----eeccccccCCCCCCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L----IG----IYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~----~~----~~~~~~~~~~~~p~s~Dlv~~~~ 423 (506)
.++|||+|||+|-+...|+.-| .+|+++|++.+|+++|.++- . .+ .+...|++.+..-..||.|.|+-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 4679999999999999999976 79999999999999999873 1 12 13334555555557899999999
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++ |..++..++.-+-+.|||||.++|++.
T Consensus 167 vle---HV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLE---HVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHH---HHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 888 555888899999999999999999764
No 102
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.17 E-value=5.3e-11 Score=110.29 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=99.7
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCCCCCCce
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFSTYPRTY 416 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~~~p~s~ 416 (506)
..++..|.....++|.|+|||+|...+.|+++ .....++++|.|++||+.|.+|.. .+.++.|+ .+..+
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-----p~~~~ 93 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-----PEQPT 93 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-----CCCcc
Confidence 34566788888999999999999999999886 335789999999999999999874 34555555 13889
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe--Ch--hhHHHHHHHHhcCCceEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD--EV--DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--~~--~~~~~~~~~~~~~~w~~~~ 476 (506)
|+++++.+|..+.++ ..+|..+---|.|||.|.+.- .. +.-..|++.++..-|...+
T Consensus 94 dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 94 DLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQEL 154 (257)
T ss_pred chhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhh
Confidence 999999999988766 447888888899999999952 22 3567788888888887543
No 103
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.17 E-value=8.5e-10 Score=107.00 Aligned_cols=101 Identities=22% Similarity=0.205 Sum_probs=75.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC---CCCCCceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---STYPRTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~---~~~p~s~Dlv~~~~~ 424 (506)
+..+|||+|||+|.++..++.......+++++|.++.+++.+.++. +...+.....++ +.-+++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 4468999999999999988875421368999999999999888762 111121122233 222379999999888
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+. +..++..+|.++.++|+|||.+++.+
T Consensus 131 l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 76 45578899999999999999999854
No 104
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.17 E-value=1.5e-10 Score=111.50 Aligned_cols=122 Identities=9% Similarity=0.184 Sum_probs=92.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----cceeccccccCCCCCCceeEEEEcccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~ 427 (506)
+..+|||+|||+|.++..|++.+ ..|+++|.+++|+..|.++.. ...+...+.++...+++||+|.+..++.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45689999999999999999865 479999999999999988731 11233345666666699999999888875
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeChh------------------------hHHHHHHHHhcCCceEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
.. ..++..++.++.|+++|++++.+..... ..+++.++++.++|++...
T Consensus 132 ~~-~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 132 YP-ASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVRE 204 (219)
T ss_pred CC-HHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeee
Confidence 53 3457789999999999988887743211 3466788888888886543
No 105
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.16 E-value=1.8e-10 Score=119.83 Aligned_cols=114 Identities=23% Similarity=0.413 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc--CCCeEEEEe
Q 010592 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER--GVPAVIGVL 155 (506)
Q Consensus 81 f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~--~~~~~~~~~ 155 (506)
+.......++.+.+.+... ++.+|||||||+|.++..+++. .|+++|+|+.++ +.+.++ +..+.+...
T Consensus 148 L~~Aq~~k~~~l~~~l~l~--~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-----~~A~~~~~~l~v~~~~~ 220 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLK--PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-----KLAQERCAGLPVEIRLQ 220 (383)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHHHhccCeEEEEEC
Confidence 4444455566777777554 3459999999999999999875 377777776544 344332 344555555
Q ss_pred ccccCCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIKMPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|...+ +++||.|++..+++|... +...+++++.++|||||++++..
T Consensus 221 D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 221 DYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred chhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 65544 468999999998888643 23789999999999999999975
No 106
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.16 E-value=2.3e-10 Score=110.94 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=76.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+ ....++++|.++.++..+.++.. +..+..-.+.++..+++||+|+++.++++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc--
Confidence 3579999999999999998864 23568999999999998888742 111211123444445899999999888743
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.++..+|.++.|+|||||.+++.+.
T Consensus 112 -~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 112 -DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred -cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4678899999999999999999653
No 107
>PRK06922 hypothetical protein; Provisional
Probab=99.15 E-value=9.6e-11 Score=126.25 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=76.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCCC-C-CCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFST-Y-PRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~~-~-p~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|.++..|++.. ...+|+++|.|+.|++.|.++.. +..+..-+.+++. + +++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 4689999999999988887642 34699999999999999887621 1111111233442 3 4899999998888
Q ss_pred ccccC----------cCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 426 SLYKD----------KCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~----------~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++.. ..++..+|.++.|+|||||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 75421 23567899999999999999999884
No 108
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.15 E-value=2.7e-10 Score=111.92 Aligned_cols=109 Identities=25% Similarity=0.318 Sum_probs=78.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHc-CCCe--EEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER-GVPA--VIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~-~~~~--~~~~~d~~~lp~~ 163 (506)
+.+...++ +-.+++|||||||.|+++-.++.+| |+++|.++ ....+.++.++- +... ...-..++.+|.
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~--lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP--LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh--HHHHHHHHHHHHhCCCccEEEcCcchhhccc-
Confidence 34444442 3356799999999999999999885 55555544 334444444332 2222 222246788887
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++||+|+|..+|.| ..+|-..|.++...|+|||.+++.+
T Consensus 180 ~~~FDtVF~MGVLYH-rr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYH-RRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cCCcCEEEEeeehhc-cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 789999999999999 4678999999999999999999853
No 109
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=2.2e-10 Score=105.45 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=79.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----c--cceeccccccCCCCC-CceeEEEEc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----L--IGIYHDWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----~--~~~~~~~~~~~~~~p-~s~Dlv~~~ 422 (506)
..-..||.+|||||.--.++-..+ .-.|+.+|.+++|-+++..+- + ...++.-.|.++.++ .|||.|.|.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCT 152 (252)
T ss_pred cCccceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEE
Confidence 334468999999998766665433 367999999999999776542 1 124455567888776 999999998
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.++. ...++..+|.|+.|+|||||.+++-+..
T Consensus 153 lvLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 153 LVLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8887 6678899999999999999999996543
No 110
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.14 E-value=4.3e-10 Score=106.29 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=76.3
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC---CCCCCeeEEEEcCc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP---YASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp---~~~~sfDlV~~~~~ 175 (506)
..+|||||||+|.++..++.+ .++++|+++.++..+..+.......++.+...|+..++ +++++||.|++++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 348999999999999999876 58999998877755554443332224677777776543 55679999998765
Q ss_pred ccccCCCh--------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 176 LIPWGAND--------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~--------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
. +|.... ..+++++.++|||||.|++.+..
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3 443321 47899999999999999998643
No 111
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.14 E-value=4.5e-10 Score=112.68 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEE
Q 010592 78 GTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (506)
Q Consensus 78 ~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~ 154 (506)
+..|+.|.........+.+.....++.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...+.......
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n-~~~n~~~~~~~~ 213 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN-AELNQVSDRLQV 213 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCcceEE
Confidence 3445555544443333333211224569999999999998888765 489999998776555443 333444322222
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
......+...++||+|+++.... ....++.++.++|||||+|++++.
T Consensus 214 ~~~~~~~~~~~~fDlVvan~~~~----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 214 KLIYLEQPIEGKADVIVANILAE----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EecccccccCCCceEEEEecCHH----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 11112334467899999976432 236789999999999999999864
No 112
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=1.7e-10 Score=110.88 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=73.3
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH------------HcCCCeEEEEeccccCCCC-CCCe
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL------------ERGVPAVIGVLGTIKMPYA-SRAF 167 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~------------~~~~~~~~~~~d~~~lp~~-~~sf 167 (506)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .....+.+.++|...++.. .+.|
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 4589999999999999999985 88888887655443211100 0123456677888777533 3589
Q ss_pred eEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010592 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
|+|+...+++|+.++. ..+++.+.++|+|||++++
T Consensus 118 d~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 118 DAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999988888876544 7899999999999997554
No 113
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.14 E-value=6e-10 Score=96.54 Aligned_cols=109 Identities=17% Similarity=0.023 Sum_probs=74.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-lp~~~ 164 (506)
..+.+.+... .+.+|||+|||+|.++..++++ .++++|+++..+..+..........+..+...+... ++...
T Consensus 9 ~~~~~~~~~~--~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 9 ALTLSKLRLR--PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 3344555333 2348999999999999999875 488999988766554433333222235555555543 33334
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||.|++.....+ ...+++++.+.|||||+|++..
T Consensus 87 ~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence 68999999765422 3689999999999999999874
No 114
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.13 E-value=1.2e-10 Score=115.38 Aligned_cols=103 Identities=16% Similarity=0.260 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCCh----hHHHHhhC---------CcEEEecCccchHHHHHHHH---HHcC------------------
Q 010592 102 TVRTALDTGCGVAS----WGAYLWSR---------NVIAMSFAPRDSHEAQVQFA---LERG------------------ 147 (506)
Q Consensus 102 ~~~~VLDiGCG~G~----~~~~L~~~---------~v~~vdis~~di~~~~~~~a---~~~~------------------ 147 (506)
.+.+|||+|||+|. ++..|++. .++++|+++.++..+....- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999994 44444432 47888888876655543210 0000
Q ss_pred ------CCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 148 ------VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 ------~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.+.+.|....+++.++||+|+|.++++|+.+.. ..+++++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 135677788888777788999999999998875322 689999999999999999964
No 115
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.12 E-value=1.1e-10 Score=110.22 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=79.1
Q ss_pred CceEEeecCcccHHHHHH-HhCCCeEEEEeecCCCcccHHHHHhcCccceecc------ccccCCCC--CCceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAI-QSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHD------WCEAFSTY--PRTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l-~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~------~~~~~~~~--p~s~Dlv~~~~ 423 (506)
-|.++|+|||+| .|+.. ++.. -+|+++|.++.||++|.+.-.+ .++. -.+.++.. ++|.|+|.|..
T Consensus 34 h~~a~DvG~G~G-qa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 34 HRLAWDVGTGNG-QAARGIAEHY---KEVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred cceEEEeccCCC-cchHHHHHhh---hhheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhhh
Confidence 458999999999 55544 4432 5899999999999999876431 1111 11223333 79999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCc-EEEE---EeChhhHHHHHHHHhcCCce
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEG-AIII---RDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG-~~ii---~d~~~~~~~~~~~~~~~~w~ 473 (506)
.| |+++++.++.++.|||||.| .+.| +|+.....+...+..++.|.
T Consensus 109 a~----HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 AV----HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hH----HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 88 59999999999999999988 4444 55444445555555555554
No 116
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.12 E-value=1.7e-10 Score=106.71 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=70.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
....++||+|||.|.++..|+.+ .++++|+++. +++.|+++ ...+.+.+.+.... .|.++||+|+++.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~-----Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR-----ALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH-----HHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHH-----HHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 34558999999999999999998 6888988764 44455543 23477777776443 47889999999999
Q ss_pred ccccCCC--hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 176 LIPWGAN--DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~--~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++++.+. ...++..+...|+|||.|++...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9776542 26789999999999999999753
No 117
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.12 E-value=2.1e-10 Score=109.59 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+|||||||+|.++..++++ .|+++|+++ +. ....+.+.++|+...+ +.+++||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 3458999999999999988775 388999977 11 1123567777876643 6678999
Q ss_pred EEEEcCcccccCCCh-----------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 169 MAHCSRCLIPWGAND-----------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 169 lV~~~~~l~~~~~~~-----------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|+|+.+. ++..++ ..+|+++.++|||||.|++...
T Consensus 120 ~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 120 VVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998755 333222 3589999999999999999753
No 118
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.12 E-value=2e-10 Score=110.76 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=74.5
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999999988865 3778888775554433332 22333 356666777666665 58999999999877
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+ .+...+++++.++|||||++++...
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 5 5678999999999999999999864
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.11 E-value=4.2e-10 Score=112.90 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=84.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCC-CCCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~-~p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||+|.++.+++..+. ..|+++|.++.|++.|.++. +.........+... .++.||+|+|+.+..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH-
Confidence 36899999999999988887653 48999999999999988753 21112222222222 347999999954332
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEe
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~ 477 (506)
.+..++.++.|+|||||+++++.... ..+++.+.+++. |++...
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 34678999999999999999987653 556777777776 875543
No 120
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.11 E-value=9.9e-10 Score=113.34 Aligned_cols=134 Identities=14% Similarity=0.183 Sum_probs=84.8
Q ss_pred cCCeEEcCCCCCCChhhH-HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHH
Q 010592 68 EGNVFRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQF 142 (506)
Q Consensus 68 ~~~~~~f~~~~~~f~~~~-~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~ 142 (506)
.+..+.+.+....|.... +.-.+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++.++..+..+.
T Consensus 195 ~~~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 195 EGTDWTIHNHANVFSRTGLDIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred cCceEEEEecCCccCCCCcChHHHHHHHhCCccc--CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 334444444344444332 322344556665332 348999999999999999875 4899999886665554443
Q ss_pred HHHcCC----CeEEEEeccccCCCCCCCeeEEEEcCcccccC--C-C-hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 143 ALERGV----PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG--A-N-DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 143 a~~~~~----~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~--~-~-~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. .+. .+.+...|... .++.++||+|+|+..++.-. . + ...++.++.++|+|||.|+++..
T Consensus 273 ~~-n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 273 ET-NMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HH-cCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 32 222 24455444422 23456899999997764321 1 1 15789999999999999999963
No 121
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.10 E-value=9.9e-10 Score=102.55 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=71.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|.++..++.. .++++|+++.++..+. +.+.+.+. ++.+...++..++ ..++||+|+|.. +.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 568999999999988887643 4899999887664433 33334444 4677777877764 357899999865 32
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+...+++.+.++|+|||.+++...
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 346788999999999999998753
No 122
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.10 E-value=1.9e-10 Score=106.15 Aligned_cols=122 Identities=17% Similarity=0.327 Sum_probs=98.5
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEc
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~ 422 (506)
+...|.++ .+|||+|||.|.+.++|.+.. .....+++.+++.+..+.+||+.-...|.-+.++.|| ++||.|..+
T Consensus 7 I~~~I~pg--srVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 7 IAEWIEPG--SRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHHcCCC--CEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 34456665 579999999999999998842 3578999999999999999999777777888898888 999999998
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEE----------------------eChh------------hHHHHHHHHh
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR----------------------DEVD------------EIIKVKKIVG 468 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~----------------------d~~~------------~~~~~~~~~~ 468 (506)
..+.+.. .++.+|.||-|| |...||+ +.++ .+...+.++.
T Consensus 83 qtLQ~~~---~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 83 QTLQAVR---RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred hHHHhHh---HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 8888554 678899999877 5567773 2221 6788899999
Q ss_pred cCCceEE
Q 010592 469 GMRWDTK 475 (506)
Q Consensus 469 ~~~w~~~ 475 (506)
.+++++.
T Consensus 157 ~~~i~I~ 163 (193)
T PF07021_consen 157 ELGIRIE 163 (193)
T ss_pred HCCCEEE
Confidence 9999865
No 123
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.10 E-value=4.8e-10 Score=106.69 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=73.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|++.. ...+++++|.|++|++.|.++.. +...+.-... +..+++||+|.+..+|+|.. .
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-P 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-H
Confidence 4579999999999999998751 12589999999999999988531 1222111112 22348999999999999764 4
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEe
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
..+..++.||.|++ +++++|.+
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 56789999999998 57888854
No 124
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.10 E-value=5.2e-10 Score=107.69 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~ 159 (506)
+.+.+.+.+.+.++....++.+|||+|||+|.++..++.. .++++|+++.++..+..+... .+. .+.+.+.+...
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECChhh
Confidence 3445555666666421234569999999999999999876 488999988777555444332 222 46777777776
Q ss_pred CCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEE
Q 010592 160 MPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++ ++||+|++..+++|+.. +...+++++.+++++++++.+.
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 65 78999999988878653 2368899999999988776654
No 125
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.10 E-value=1e-09 Score=101.42 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=70.7
Q ss_pred CCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
..+|||+|||+|.++..++++ . ++++|+++..+..+. +.+...+.. +.+...|... +.+.++||+|+|+..++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 458999999999999999986 3 889999886554443 334445555 6666666533 33478999999997653
Q ss_pred ccCCC-----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGAN-----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~-----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ..+ ...++++..+.|||||.|++...
T Consensus 110 ~-~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 A-GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp T-TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 3 222 25789999999999999988754
No 126
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.10 E-value=1.2e-09 Score=111.87 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=94.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++.++..+..... ..++...+...|... ...+
T Consensus 186 ~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~~~ 260 (342)
T PRK09489 186 QLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DIKG 260 (342)
T ss_pred HHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--ccCC
Confidence 34445453221 237999999999999999875 48899998877765554433 345555555555433 2357
Q ss_pred CeeEEEEcCcccccCC----ChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceee
Q 010592 166 AFDMAHCSRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~ 241 (506)
.||+|+|+..+|.... ....+++++.+.|||||.|+++.+.. +. + . ..+++.... .+.
T Consensus 261 ~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~--l~-y------~-------~~l~~~Fg~--~~~ 322 (342)
T PRK09489 261 RFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF--LP-Y------P-------DLLDETFGS--HEV 322 (342)
T ss_pred CccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC--CC-h------H-------HHHHHHcCC--eEE
Confidence 8999999988754221 12689999999999999999987543 11 0 0 123333322 467
Q ss_pred ccccCceEEEEecC
Q 010592 242 KSEKGEIAVWQKKV 255 (506)
Q Consensus 242 ~~~~~~~~i~~kp~ 255 (506)
+.+++.+.||+-..
T Consensus 323 la~~~~f~v~~a~~ 336 (342)
T PRK09489 323 LAQTGRFKVYRAIM 336 (342)
T ss_pred EEeCCCEEEEEEEc
Confidence 77788888887543
No 127
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=1.2e-09 Score=102.15 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=85.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-----cceeccccccCCCCC-CceeEEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-----IGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-----~~~~~~~~~~~~~~p-~s~Dlv~~ 421 (506)
+..+|||+|||+|.++..|+..+ .+|+++|.+++|+..+.++ ++ .....++.+ .++ .+||+|.+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEE
Confidence 35579999999999999998874 6899999999999988554 21 112222222 233 58999998
Q ss_pred cccccccc------------------CcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEee
Q 010592 422 HGLFSLYK------------------DKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 422 ~~~~~~~~------------------~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~ 478 (506)
+..+.... ....+..++.++.++|||||.+++.... ...+.+.+++...+|++....
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 76553210 0112456899999999999998885432 235678889999999866543
No 128
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.07 E-value=1e-09 Score=110.86 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=75.3
Q ss_pred HHHHHHHHhhCCCC-CCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc-----CCCeEEEEecc
Q 010592 86 DKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGT 157 (506)
Q Consensus 86 ~~~~~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~~d~ 157 (506)
+..++.+.+++... ..++.+|||||||+|.++..|++++ |+++|+|+.++..+..+..... .....+.+.|.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 44445555555322 1235699999999999999999874 8899999887765554433220 12345555565
Q ss_pred ccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 158 IKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..+ +++||+|+|..+++|+.++. ..+++.+.+ +.+||.++ +..+
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p 251 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAP 251 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCC
Confidence 433 57899999999998875543 345666664 45666544 4433
No 129
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.4e-09 Score=105.44 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=102.1
Q ss_pred CCeEEcCCCCCCChhhH-HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH
Q 010592 69 GNVFRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA 143 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~-~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a 143 (506)
+..+.|.+....|..+. +.=.+.+++.++..... +|||+|||.|.++..|++. .++-+|++...+..+..+.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl- 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNL- 202 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhH-
Confidence 34455555455554433 33445566777544333 8999999999999999986 4778888765443333333
Q ss_pred HHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh----HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCC
Q 010592 144 LERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND----GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRP 219 (506)
Q Consensus 144 ~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~ 219 (506)
..++++...+..+....+..+ +||+|+|+.-+|.=..-. .+++.+..+.|++||.|.++.... +.
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~--l~-------- 271 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH--LP-------- 271 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC--CC--------
Confidence 334455423333444445555 999999998775311111 388999999999999999997632 11
Q ss_pred hHHhHHHHHHHHHHHHhcceeeccccCceEEEEec
Q 010592 220 KEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKK 254 (506)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~i~~kp 254 (506)
....|+++... -+.+.+++...|++-.
T Consensus 272 ------y~~~L~~~Fg~--v~~la~~~gf~Vl~a~ 298 (300)
T COG2813 272 ------YEKKLKELFGN--VEVLAKNGGFKVLRAK 298 (300)
T ss_pred ------hHHHHHHhcCC--EEEEEeCCCEEEEEEe
Confidence 11234444332 5667777778877653
No 130
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.07 E-value=1.1e-09 Score=112.71 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM--PYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l--p~~~~sfDlV~~~~ 174 (506)
.+..+||||||+|.++..++.+ .++|+|+++.++..+..+.. ..++ ++.+..+|+..+ .++++++|.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~-~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE-LLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH-HcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3458999999999999999976 58999999877766554443 4444 466677777544 57889999999976
Q ss_pred cccccCCCh------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 175 CLIPWGAND------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~~~~~~~------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. +|.... ..++.++.|+|+|||.+.+.+.
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 53 664432 4799999999999999999764
No 131
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.07 E-value=1.5e-09 Score=104.16 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=80.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+........ ....+.+...+...++++.
T Consensus 29 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 29 RRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCC
Confidence 4445554322 4569999999999999888765 46778887644433322221 1234667777888888878
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||+|+++.++++ ..++..+++++.++|+|||++++..
T Consensus 105 ~~~D~i~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 105 NSFDAVTIAFGLRN-VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CcEEEEEEeeeeCC-cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 89999999988866 4567899999999999999999865
No 132
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=5.2e-10 Score=105.68 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=82.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-----CCC-CceeEEEEc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-----TYP-RTYDLIHAH 422 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-----~~p-~s~Dlv~~~ 422 (506)
...|||+|||+|.++..|+... ...+|+++|.++.|+..|.++ ++ ..+...+.++. .++ +++|.|+++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4579999999999999998753 236899999999999987654 22 22333333332 144 699999985
Q ss_pred ccccc-----ccCcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhcCC-ceE
Q 010592 423 GLFSL-----YKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMR-WDT 474 (506)
Q Consensus 423 ~~~~~-----~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~-w~~ 474 (506)
.-..+ ..++...+.+|.++.|+|||||.|++. |...+.+++.+.+.... |+.
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 43221 112333467999999999999999985 55556666666655544 664
No 133
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.06 E-value=1.4e-09 Score=111.31 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=91.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEcccccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
.+|||+|||+|.++..+++.. ....|+++|.++.|+..|.+. ++..... +...++..++.||+|.|+.-|+...
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 469999999999999998753 235799999999999988653 3322211 1222333458999999998887432
Q ss_pred Cc--CCHHHHHHHHhhhccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 430 DK--CNIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 430 ~~--~~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.. ...+.++.++.|.|||||.|+|.. .+++...+++.+... ++.. +. .+.+++.|+|
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~ 336 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIM 336 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEc
Confidence 21 234689999999999999998843 456777777776543 3222 21 3678888876
No 134
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.05 E-value=1.3e-09 Score=101.27 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=92.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc--eeccccccCCCCCCceeEEEEcccc
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG--IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~--~~~~~~~~~~~~p~s~Dlv~~~~~~ 425 (506)
+.....+-|||||||+|.-+..|.+.| ...+++|+|+.||++|.+|-+-+ ...+..+.+|+-|+|||-+.+-+++
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 444457789999999999999999987 67899999999999999864432 4455678899999999998887777
Q ss_pred ccccC---cC-----CHHHHHHHHhhhccCCcEEEEEe---ChhhHHHHHHHHhcCCce
Q 010592 426 SLYKD---KC-----NIEDILLEMDRILRPEGAIIIRD---EVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 426 ~~~~~---~~-----~~~~~l~e~~RvLrPgG~~ii~d---~~~~~~~~~~~~~~~~w~ 473 (506)
..+-| .+ .+..++.-++.+|++|+..++.= ..+.++.|..-+.+.++.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence 63321 11 12346777999999999999953 334556666666666654
No 135
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=1.5e-09 Score=103.52 Aligned_cols=107 Identities=14% Similarity=0.056 Sum_probs=75.3
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
....+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+..+. ...+.. +.+...|....
T Consensus 60 ~~~~~~~~l~~~--~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 60 MVAMMCELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHhcCCC--CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccC
Confidence 445566666433 3458999999999999888753 4889999886664444333 333432 56677777654
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
....++||+|++..++.++ ..++.+.|+|||+|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 4456789999998876443 257889999999999864
No 136
>PRK06202 hypothetical protein; Provisional
Probab=99.05 E-value=8.2e-10 Score=107.28 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
.+.+|||||||+|.++..|++. .++++|+++.++..+..... .....+.+.+...+++++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---cCCCeEEEEecccccccCCCccEEEEC
Confidence 4468999999999998888641 47888887765544332211 122344555666677778899999999
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
.+++|+.++. ..+++++.|+++ |.+++.
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 9998875432 579999999998 444444
No 137
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.04 E-value=1.7e-09 Score=104.95 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=81.3
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCC
Q 010592 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-YASR 165 (506)
Q Consensus 89 ~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp-~~~~ 165 (506)
++.+...+. ..++.+|||||||+|.++..+++. .++++|+++..+..+.... ...+....+...+....+ ..++
T Consensus 37 ~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 37 LNYIREHAG--GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHhcc--CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCC
Confidence 444555442 234568999999999999988876 4788888775554333222 223445556666665554 3457
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+++.++++. .++..+++.+.++|+|||.++++.+.
T Consensus 114 ~fD~Ii~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 114 QFDVVTCMEMLEHV-PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CccEEEEhhHhhcc-CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 89999999988774 56788999999999999999998654
No 138
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4e-10 Score=111.50 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=80.1
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEe
Q 010592 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVL 155 (506)
Q Consensus 79 ~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~~~ 155 (506)
-.|+.|...-....++++.....++.+|||+|||+|.++...++.| +.++|++|..+ +++.++++.++++......
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAK 217 (300)
T ss_pred cccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcc
Confidence 4566666544443444443222466799999999999988887763 88999988655 4444566666665311111
Q ss_pred ccccCCCCC-CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIKMPYAS-RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~lp~~~-~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
....+..+. +.||+|++|-.... ...+..++.+.|||||++++|+
T Consensus 218 ~~~~~~~~~~~~~DvIVANILA~v----l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 218 GFLLLEVPENGPFDVIVANILAEV----LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cccchhhcccCcccEEEehhhHHH----HHHHHHHHHHHcCCCceEEEEe
Confidence 122223333 58999999863211 2688999999999999999996
No 139
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.04 E-value=2.3e-09 Score=105.40 Aligned_cols=117 Identities=22% Similarity=0.258 Sum_probs=73.7
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEE
Q 010592 78 GTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (506)
Q Consensus 78 ~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~ 154 (506)
+..|+.+.........+.+......+.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...++.....
T Consensus 95 ~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~- 172 (250)
T PRK00517 95 GMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY- 172 (250)
T ss_pred CCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE-
Confidence 3345555544333333333211234569999999999988887765 388999988766544433 33344421111
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++..+.+||+|+++.... ....++.++.++|||||++++++.
T Consensus 173 -----~~~~~~~fD~Vvani~~~----~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 173 -----LPQGDLKADVIVANILAN----PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred -----EccCCCCcCEEEEcCcHH----HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 122223799999975321 136789999999999999999854
No 140
>PTZ00146 fibrillarin; Provisional
Probab=99.03 E-value=2.8e-09 Score=105.48 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=78.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcc----cHHHHHhc-Cccceecccccc--CCCCCCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN----TLGVIYER-GLIGIYHDWCEA--FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~----~l~~~~~r-g~~~~~~~~~~~--~~~~p~s~Dlv~~~~ 423 (506)
.+..+|||+|||+|.++.+|++.-.....|+++|++++ |+.++.+| .+..+..+.... +.....+||+|+++.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 34468999999999999999985322247999999975 56677665 343444332211 111237899999855
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEE------eChh-----hHHHHHHHHhcCCceEE
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR------DEVD-----EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~------d~~~-----~~~~~~~~~~~~~w~~~ 475 (506)
. +..+...++.++.|+|||||.|+|. |... +.+++ +.+++.+++..
T Consensus 211 a-----~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~ 267 (293)
T PTZ00146 211 A-----QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPK 267 (293)
T ss_pred C-----CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceE
Confidence 3 2334456778999999999999993 2211 11234 56788888854
No 141
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.03 E-value=3.9e-09 Score=100.89 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=79.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC----------C-CCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST----------Y-PRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~----------~-p~s~Dlv~~ 421 (506)
..+|||+|||||.++..+++.......|+++|.++ |... .++ ...+.++.. + +.+||+|.|
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v----~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGV----DFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCc----EEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 45899999999999998887643335899999985 4322 121 112233322 3 378999999
Q ss_pred ccccccccCcC-C-------HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcC--CceEE-EeecC-CCCCCCeEE
Q 010592 422 HGLFSLYKDKC-N-------IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM--RWDTK-MVDHE-DGPLVPEKI 489 (506)
Q Consensus 422 ~~~~~~~~~~~-~-------~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~--~w~~~-~~~~~-~~~~~~~~~ 489 (506)
+.+........ + .+.+|.++.|+|||||.|+|..-.. +.+.+++..+ .|... +..-. .-..+.|.+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~ 201 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 201 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeE
Confidence 76554322211 1 2469999999999999999964332 1122222222 33322 22111 112247889
Q ss_pred EEEEe
Q 010592 490 LVAVK 494 (506)
Q Consensus 490 l~~~k 494 (506)
++|+.
T Consensus 202 ~~~~~ 206 (209)
T PRK11188 202 IVATG 206 (209)
T ss_pred EEeec
Confidence 98864
No 142
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.02 E-value=6.3e-09 Score=97.62 Aligned_cols=105 Identities=17% Similarity=0.040 Sum_probs=72.4
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASR 165 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~ 165 (506)
.+.+.+... .+.+|||+|||+|.++..++++ .++++|+++.++..+..+.. ..+. .+.+...+.. .++ .+
T Consensus 22 ~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~-~~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 22 LALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ-RFGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCeEEEecCch-hhc-Cc
Confidence 344555433 3458999999999999988764 48899998876654443333 2333 3455544542 233 35
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|++..... ....++.++.++|+|||++++..
T Consensus 97 ~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 97 KADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 799999976542 24678999999999999999864
No 143
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=3.9e-08 Score=96.94 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=95.5
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEE
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLI 419 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~Dlv 419 (506)
++..+......+|||+|||+|-++..|++... ...++-+|.+...++.|++- ++-+.......-++...+.||+|
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~I 228 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLI 228 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEE
Confidence 33333333334899999999999999998643 56899999998888877653 22221111122233334799999
Q ss_pred EEccccccccCcCC--HHHHHHHHhhhccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 420 HAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 420 ~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.|+-=|+.-..... -..++.+-.+-|++||.|+|-- .+++...|++++. ++..+... ...+|+-++|.
T Consensus 229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~ 300 (300)
T COG2813 229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA 300 (300)
T ss_pred EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence 99888874332211 1368899999999999888843 4557888888776 34444333 36888888773
No 144
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.02 E-value=2.7e-09 Score=103.48 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=81.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHH-cCCCeEEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~-~~~~~~~~~~d~~~lp~~ 163 (506)
..+...+... ++.+|||+|||+|.++..++.. .++++|+++..+..+....... ...++.+...+...++++
T Consensus 41 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLGVR--PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhCCC--CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 3444444322 3458999999999998888754 4788888876554444333221 123466777788778877
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++||+|+++.++++ ..+...++.++.++|+|||.+++..
T Consensus 119 ~~~~D~I~~~~~l~~-~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 119 DNSFDAVTIAFGLRN-VPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCCccEEEEeccccc-CCCHHHHHHHHHHhccCCcEEEEEE
Confidence 789999999988866 4567899999999999999998864
No 145
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.02 E-value=2e-09 Score=100.29 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=74.0
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+....+...|....+ .++||+|+++..+++...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 47999999999999999887 37899998876655544433 34455666666665443 458999999987755432
Q ss_pred C--------------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 182 N--------------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 182 ~--------------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
. ...++.++.++|||||.+++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 1 146799999999999999998643
No 146
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.8e-09 Score=105.58 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=95.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcccee----ccccccCCCCC--CceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY----HDWCEAFSTYP--RTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~----~~~~~~~~~~p--~s~Dlv~~~~~~ 425 (506)
+.++|||+|||+|-++-+.++-|. ..|+++|+.+..+++|++.-....+ +.-+-.....+ +.||+|.|+= +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 578999999999999998888763 5799999999999999885321111 11111122223 5999999922 1
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
- .-+..+..++.+.|||||++|++--+. ..+.+.+.+.+.+|++...... +.+..++.+|+
T Consensus 239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~----~eW~~i~~kr~ 300 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER----EEWVAIVGKRK 300 (300)
T ss_pred H-----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec----CCEEEEEEEcC
Confidence 1 123568889999999999999987654 5677888899999997755444 36888888774
No 147
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.01 E-value=2.6e-09 Score=105.04 Aligned_cols=127 Identities=12% Similarity=0.187 Sum_probs=93.3
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHH--HHhc--Cccceeccc---cccCCCCCC
Q 010592 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV--IYER--GLIGIYHDW---CEAFSTYPR 414 (506)
Q Consensus 342 ~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~--~~~r--g~~~~~~~~---~~~~~~~p~ 414 (506)
..+.+.+..-..++|||||||.|.++-+|+..|. ..|+++|.+...+-. +..+ |.-...+.. -|++|. .+
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 3445556666788999999999999999998873 579999987554332 2222 111111111 245554 58
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC------------------------hhhHHHHHHHHhcC
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEIIKVKKIVGGM 470 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~~~~~~~~~~ 470 (506)
+||+|+|.+||= |+-++...|.++...|||||.||+-.. ++.+..|+..++++
T Consensus 182 ~FDtVF~MGVLY---Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~ 258 (315)
T PF08003_consen 182 AFDTVFSMGVLY---HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERA 258 (315)
T ss_pred CcCEEEEeeehh---ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHc
Confidence 999999999998 777899999999999999999998211 23778899999999
Q ss_pred CceE
Q 010592 471 RWDT 474 (506)
Q Consensus 471 ~w~~ 474 (506)
+++-
T Consensus 259 gF~~ 262 (315)
T PF08003_consen 259 GFKD 262 (315)
T ss_pred CCce
Confidence 9973
No 148
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.01 E-value=7.9e-10 Score=110.33 Aligned_cols=121 Identities=23% Similarity=0.267 Sum_probs=81.5
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEE
Q 010592 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG 153 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~ 153 (506)
.+..|+.|.+.-....++++.....++.+|||+|||+|.++...+.. .|.++|++|..+ +.+.+++..+++...+.
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIE 214 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEE
T ss_pred CCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEE
Confidence 44678888866665555555322344569999999999888777765 489999998655 45555666677766554
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 154 VLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.... ....+.||+|+++-.... ...++..+.+.|+|||+|++|+
T Consensus 215 v~~~~--~~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 215 VSLSE--DLVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp ESCTS--CTCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEE
T ss_pred EEEec--ccccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEcc
Confidence 43222 233589999999864322 2578888999999999999996
No 149
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.01 E-value=7.6e-10 Score=105.94 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=86.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh-cCcc--------------ceeccccccCCCCC----
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-RGLI--------------GIYHDWCEAFSTYP---- 413 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~-rg~~--------------~~~~~~~~~~~~~p---- 413 (506)
..+|||+|||.|..+.+|+++| .+|+++|.|+.+++.++. .|+. ..+...+.++..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4589999999999999999987 689999999999997544 3431 11233456665444
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE---e-Ch-----h---hHHHHHHHHhcCCceEEEeec
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR---D-EV-----D---EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~---d-~~-----~---~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.+||+|....+|.++. ...-+..+..|.+.|||||++++. . .. + ..++|.+++. -.|++...+.
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 5799999877777553 334467999999999999975552 1 11 1 4466777664 3577665543
No 150
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=1.6e-09 Score=108.16 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=89.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCCCceeEEEEccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~ 428 (506)
..+|||+|||+|.++-+-++-|. ..|+++|.++..++.|.+-. +-..+. +..........||+|.|+-...
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~~~~~~~~~~~dlvvANI~~~-- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-VSLSEDLVEGKFDLVVANILAD-- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-ESCTSCTCCS-EEEEEEES-HH--
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-EEEecccccccCCEEEECCCHH--
Confidence 35899999999999877777663 47999999999999887752 211111 1111111239999999943332
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
-+...+..+.+.|+|||+||++--+. ..+.+.+.+++ +|++.....+ +.+..|+++|+
T Consensus 237 ----vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 ----VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp ----HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred ----HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 34568888999999999999986554 56777787877 9997655444 37999999986
No 151
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=3.1e-09 Score=101.80 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=75.5
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM 160 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l 160 (506)
.....+.+.+... ++.+|||||||+|+++..+++. .++++|+++.++..+..+.. ..+. ++.+...|....
T Consensus 63 ~~~~~~~~~l~~~--~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcccC
Confidence 3445566666443 3459999999999999888754 48899998866654443333 3333 467777777665
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.+.||+|++.....+ ....+.+.|||||.|++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 556688999999765533 2356778999999999864
No 152
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.99 E-value=3.7e-09 Score=102.20 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=73.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCCCceeEEEEcccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~ 427 (506)
+..+|||+|||+|.++..|++.+ ..|+++|.+++|+..|.++- +...++....+++..+++||+|++..+|.|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 35689999999999999999875 45999999999999998762 111233334556655689999999999875
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.. ...+..++.++.+++++++.+.+
T Consensus 140 ~~-~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 140 YP-QEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CC-HHHHHHHHHHHHhhcCCeEEEEE
Confidence 43 23567899999998876665554
No 153
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.99 E-value=1.6e-09 Score=111.35 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=81.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCC-CceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYP-RTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p-~s~Dlv~~~~ 423 (506)
...+||||||+|.++..|+... ...+++++|.++.|+..|.++ |+ ..+...+.+. ..++ +++|.|+++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4579999999999999999863 346899999999998877654 33 1222222222 2344 8999999853
Q ss_pred cccccc--C-cCCHHHHHHHHhhhccCCcEEEE-EeChhhHHHHHHHHhcC-CceE
Q 010592 424 LFSLYK--D-KCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 424 ~~~~~~--~-~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~-~w~~ 474 (506)
-..+.. | |-..+..|.|+.|+|||||.+.| +|..++.+.+.+.+... ++..
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 322211 1 11226899999999999999999 56666776666665444 4443
No 154
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.99 E-value=3.2e-09 Score=91.96 Aligned_cols=96 Identities=19% Similarity=0.113 Sum_probs=69.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCCCceeEEEEc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p~s~Dlv~~~ 422 (506)
....+|||+|||+|.++..+++.. ...+|+++|.++.+++.+.+. ++. .+...+.+. +..+.+||.|.+.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEEC
Confidence 334589999999999999998752 126899999999999987653 221 122222222 2234799999985
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.... ....++.++.|+|||||+|++.
T Consensus 96 ~~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 4332 3468999999999999999985
No 155
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.99 E-value=3.5e-09 Score=99.47 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=77.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc------CCCCC-CceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA------FSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~------~~~~p-~s~Dlv~~~~~ 424 (506)
+..+|||+|||+|+++..+++.......|+++|.++.+ ...++.....+..+. ...++ ++||+|.++..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 34689999999999988887653223479999999654 111221111121110 00134 78999998643
Q ss_pred cccccCc--------CCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeec-CCCCCCCeEEEEEE
Q 010592 425 FSLYKDK--------CNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDH-EDGPLVPEKILVAV 493 (506)
Q Consensus 425 ~~~~~~~--------~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~l~~~ 493 (506)
.+....+ ..++.+|.++.++|||||.++|.... ....++-..++..-|.+.+... ..-....|++++|.
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 2211111 12467999999999999999994322 2222233333222244433221 11222468888885
No 156
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.98 E-value=1.2e-08 Score=99.94 Aligned_cols=117 Identities=20% Similarity=0.284 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~ 157 (506)
.....+++.+.+.+. ..+.+|||+|||+|.++..+++. .++++|+++.++..+... +...+.. +.+...|.
T Consensus 71 ~~~~~l~~~~l~~~~---~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 71 PDTEELVEAALERLK---KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN-AARLGLDNVTFLQSDW 146 (251)
T ss_pred CChHHHHHHHHHhcc---cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECch
Confidence 344666666666663 23348999999999999999875 588999988766544433 3334443 66666666
Q ss_pred ccCCCCCCCeeEEEEcCccccc------CCC-------------------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 158 IKMPYASRAFDMAHCSRCLIPW------GAN-------------------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~------~~~-------------------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. ++++++||+|+|+..+... ..+ ...++.++.++|+|||.+++..
T Consensus 147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44 4567899999997544311 000 0256889999999999999975
No 157
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.98 E-value=2.1e-09 Score=99.98 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=83.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecc-ccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~-~~lp~ 162 (506)
....+.-++++.++.....-|||||||+|..+..|.+.+ ++++|||+.|++.++. +-+...+...|+ +.+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCC
Confidence 344455666776666566799999999999999998875 6888898887765553 222223444454 78999
Q ss_pred CCCCeeEEEEcCcccccCC-------Ch----HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGA-------ND----GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~-------~~----~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..++||.|++..++ +|.- ++ ..++..++.+|++|+..++...+.
T Consensus 109 rpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 RPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 99999999986654 4421 12 267888999999999999975443
No 158
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.98 E-value=2.8e-09 Score=107.68 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=84.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc--------ceeccccccCCCCCCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI--------GIYHDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~--------~~~~~~~~~~~~~p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++.-. ......+.+++.++++||+|.|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4589999999999999999875 5899999999999999887321 1122223456666789999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh----------------------h---hHHHHHHHHhcCCceEEEee
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------D---EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~---~~~~~~~~~~~~~w~~~~~~ 478 (506)
+.|+.. .....++..+.+ +.+||.++..... . ..+++++++++.+|++...+
T Consensus 222 L~H~p~-~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 222 LIHYPQ-DKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred EEecCH-HHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 886542 234456666665 4566554432110 0 25778888888999866543
No 159
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.97 E-value=5.2e-09 Score=100.49 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C---cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N---VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~---v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp 161 (506)
....+.+.+... ++.+|||||||+|.++..|++. . |+++|+++.++..+. +...+.+. ++.+...|.....
T Consensus 65 ~~~~~~~~l~~~--~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELK--PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCC--CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCC
Confidence 334556666443 4459999999999999988875 2 889999886664444 33334444 4666667765544
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.....||+|++.....+ +...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 34568999998765433 3466889999999999864
No 160
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.96 E-value=3.6e-09 Score=102.34 Aligned_cols=111 Identities=25% Similarity=0.338 Sum_probs=74.2
Q ss_pred HHHHHHHhhCCC-CCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 010592 87 KYIDQLASVIPI-KNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp 161 (506)
...+.+.+.++. ...++.+|||||||+|.++..|++. .++++|+++.++..+...... .+. .+.+...| ++
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~~ 122 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---LE 122 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---ch
Confidence 334444555432 1123458999999999999999876 488899988777655544333 222 35566555 44
Q ss_pred CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEE
Q 010592 162 YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li 201 (506)
..+++||+|++..+++|+.... ..+++++.+.+++++.+.
T Consensus 123 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 4568899999999988865433 678888888775544433
No 161
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.95 E-value=2.2e-09 Score=101.32 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=68.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEccccccccCcC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~~~~~~~ 432 (506)
.+|||+|||+|.++..|++.. ..+++++|.+++|+..+.++++.....+..+.++.++ ++||+|.++++|++. .
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~---~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT---R 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC---c
Confidence 479999999999999997643 2467899999999999988775322222222233344 899999999999854 4
Q ss_pred CHHHHHHHHhhhccCC
Q 010592 433 NIEDILLEMDRILRPE 448 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPg 448 (506)
++..+|.||.|+++++
T Consensus 90 d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 NPEEILDEMLRVGRHA 105 (194)
T ss_pred CHHHHHHHHHHhCCeE
Confidence 6788999999988764
No 162
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.95 E-value=3.6e-09 Score=101.95 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC-CCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA-SRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~-~~sfDlV~~~~~l~ 177 (506)
.+.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. ...+...+...++.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 3568999999999999988775 47888887766554443333 2334 466666776666544 47899999999886
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+ ..++..+++++.++|+|||.++++...
T Consensus 124 ~-~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 H-VPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred h-CCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 6 467789999999999999999987653
No 163
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.94 E-value=4.5e-09 Score=101.27 Aligned_cols=97 Identities=14% Similarity=0.230 Sum_probs=73.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCC-CCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~-p~s~Dlv~~~~~~ 425 (506)
..+|||+|||+|.++..+++.+ ..++++|.++.++..+.++ +. +.....-.+.++.. +++||+|++.+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999999888765 4699999999999988775 22 11111111222222 4799999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++ ..++..+|.++.++|+|||.+++.+
T Consensus 123 ~~---~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EH---VPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred Hh---CCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 74 4577889999999999999999865
No 164
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.94 E-value=1.5e-09 Score=104.29 Aligned_cols=122 Identities=11% Similarity=0.120 Sum_probs=86.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH-hcCccc--------------eeccccccCCCC---C-
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY-ERGLIG--------------IYHDWCEAFSTY---P- 413 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~-~rg~~~--------------~~~~~~~~~~~~---p- 413 (506)
..+|||+|||.|..+..|+++| .+|+++|.|+..++.++ ++++.. .++.++.++..+ +
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 3589999999999999999987 58999999999999754 455421 223345555544 2
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE-E-----eCh------hhHHHHHHHHhcCCceEEEeec
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII-R-----DEV------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii-~-----d~~------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.+||+|+-..+|.+.. ...-...+..|.++|||||++++ . +.. -..++|.+++.. +|++.....
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEeee
Confidence 6899999877777553 33446799999999999997554 1 111 145777777753 388665443
No 165
>PLN03075 nicotianamine synthase; Provisional
Probab=98.93 E-value=4.3e-09 Score=104.53 Aligned_cols=102 Identities=9% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCChhHHHHhh--C----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWS--R----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~--~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
.+++|+|||||.|.++..+.. . .++++|+++..+..+........++ .+.|...|+..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 456899999998865544332 2 3889999887665555444332333 4778888877654335689999999
Q ss_pred CcccccC-CChHHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++|. .++..+++.+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 566999999999999999999975
No 166
>PRK14967 putative methyltransferase; Provisional
Probab=98.92 E-value=1.4e-08 Score=98.00 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...+....+...|... .+++++||+|+++..+.+-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 458999999999999988875 47899998866644433 333345556666666544 3456799999998543221
Q ss_pred CCC--------------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 180 GAN--------------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 180 ~~~--------------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
... ...++.++.++|||||.+++..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 110 135788899999999999986543
No 167
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.92 E-value=7.7e-09 Score=104.45 Aligned_cols=114 Identities=10% Similarity=0.108 Sum_probs=77.2
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-CCCeEEEEecccc-C
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIK-M 160 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~-l 160 (506)
..+.|++.++ ++.+|||+|||+|..+..|++. .++++|+|+.|+..++.+..... ++++...++|... +
T Consensus 53 ~~~~ia~~~~----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 53 HADEIAAATG----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHhhC----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 3344555442 3458999999999999888765 48899999888876666554432 3455667778754 4
Q ss_pred CCCCC----CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASR----AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~----sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++.. ...++++..++.++.++. ..+|+++.++|+|||.|++...
T Consensus 129 ~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 129 ALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred hhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44332 233444445555554322 6899999999999999999754
No 168
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.91 E-value=4.4e-09 Score=100.24 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=68.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C--CCceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y--PRTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~--p~s~Dlv~ 420 (506)
+......+|||+|||+|.+++.|++.-.....|+++|.+++|++.|.++ ++...++....++.. + ..+||+|+
T Consensus 68 l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 68 IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 3334456899999999999988876411124799999999999988764 322222222233322 2 27999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.++.+ +..|+.|+|||||+|++-.
T Consensus 148 ~~~~~~~---------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 148 VTAAAST---------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EccCcch---------hhHHHHHhcCcCcEEEEEE
Confidence 9666542 3368899999999999854
No 169
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.90 E-value=4.3e-09 Score=106.56 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=76.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~ 421 (506)
.+...+.++|||||||+|.++..++++. ...+++.+|. +.+++.+.++ |+...+...+.++-..+ ..+|+|.+
T Consensus 144 ~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~ 221 (306)
T TIGR02716 144 EAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLF 221 (306)
T ss_pred HcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEe
Confidence 3444556799999999999999998763 2367899998 4899877654 44333444455553322 34799988
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++++++. ......+|.++.|+|||||+++|.|.
T Consensus 222 ~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 222 CRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77776432 12345799999999999999999763
No 170
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.90 E-value=9.9e-09 Score=99.62 Aligned_cols=98 Identities=14% Similarity=0.274 Sum_probs=73.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-cceeccccccCC-CCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFS-TYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-~~~~~~~~~~~~-~~p~s~Dlv~~~~~~ 425 (506)
+...|||||||+|.++..+.+.+ .+++++|.+++++..+.++ +. +.....-.+.++ ..+..||+|+++.+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45579999999999999998865 5799999999999988765 22 111111011222 123899999999888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+. .++..+|.++.++|+|||.+++.+
T Consensus 125 ~~~---~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 125 EHV---PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hcc---CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 844 467789999999999999999975
No 171
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.90 E-value=1.2e-08 Score=104.34 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=81.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~s 166 (506)
..+.++.... ++.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+.. +.+...|+.++|+++++
T Consensus 172 ~~~~~l~~~~--~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~-~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 172 RAMVNLARVT--EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE-HYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHhCCC--CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH-HhCCCCCeEEecchhcCCcccCC
Confidence 3444444333 3458999999999988776654 58899998877765554433 33433 46777888899988889
Q ss_pred eeEEEEcCcccc---cCC----C-hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 167 FDMAHCSRCLIP---WGA----N-DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 167 fDlV~~~~~l~~---~~~----~-~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
||+|+++..+.. ... + ...++.++.++|||||++++..|..
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999999743211 001 1 2689999999999999999987644
No 172
>PRK04266 fibrillarin; Provisional
Probab=98.90 E-value=1.1e-08 Score=98.90 Aligned_cols=103 Identities=21% Similarity=0.176 Sum_probs=70.9
Q ss_pred hCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCC
Q 010592 95 VIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRA 166 (506)
Q Consensus 95 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~s 166 (506)
.++.. ++.+|||+|||+|.++..|++. .|.++|+++.++.... +.+.++ .++.+...|... .++. .+
T Consensus 67 ~l~i~--~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 67 NFPIK--KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hCCCC--CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-cc
Confidence 45444 3459999999999999999875 3899999987775433 344433 345566666643 1223 56
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|++.... ......++.++.++|||||+|+++.+
T Consensus 142 ~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 142 VDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999974321 11124568999999999999999754
No 173
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.89 E-value=4e-09 Score=101.27 Aligned_cols=97 Identities=16% Similarity=0.062 Sum_probs=68.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--CceeEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTYDLIH 420 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~Dlv~ 420 (506)
+...+..+|||+|||+|.+++.|++.......|+++|.++++++.|.++ |+ ..+...+.+... ++ ..||+|+
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEE
Confidence 3344556899999999999999987532224699999999999988765 33 223333344332 22 6899999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++... ..+..++.+.|+|||++++.
T Consensus 152 ~~~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 152 VTAAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EcCCc---------ccccHHHHHhcCcCcEEEEE
Confidence 85433 23456788999999999984
No 174
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.89 E-value=2.4e-09 Score=92.06 Aligned_cols=101 Identities=23% Similarity=0.392 Sum_probs=70.6
Q ss_pred CEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010592 104 RTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
.+|||+|||+|.++..+++. .++++|+++.-+.-+..... ..+ .+..+.+.|..... +++++||+|+++..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP-RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH-HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH-HccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 48999999999999888865 47888887754333332222 222 35788888886664 778999999998766
Q ss_pred cccCCC-------hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IPWGAN-------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~~-------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...... ...+++++.++|||||.+++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 432111 14789999999999999998764
No 175
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=6.5e-09 Score=99.61 Aligned_cols=102 Identities=19% Similarity=0.112 Sum_probs=69.9
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-C-Cce
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-P-RTY 416 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p-~s~ 416 (506)
++..+......+|||+|||+|.+++.|+........|+++|.+++|++.+.++ |+ ..+...+.+... + + ..|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCc
Confidence 33334444567899999999999988876422235899999999999988875 22 122222334322 2 2 789
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|++...+. .+..++.+.|||||.+++--
T Consensus 147 D~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGP---------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCcc---------cchHHHHHhhCCCcEEEEEE
Confidence 9999965543 23456778999999999953
No 176
>PRK14968 putative methyltransferase; Provisional
Probab=98.88 E-value=3.3e-08 Score=92.31 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~---~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..++.+ .++++|+++.++..+..+. ...+.. +.+...|... ++.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 3458999999999999999876 5888999886665444333 233332 5566666543 3455689999997654
Q ss_pred cccCC----------------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IPWGA----------------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~----------------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+..+ + ...+++++.++|||||.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 33110 0 14579999999999999988764
No 177
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.87 E-value=1.1e-08 Score=96.72 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=70.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-C-CCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-M-PYAS 164 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-l-p~~~ 164 (506)
+.+.+.++ ++.+|||||||+|.++..+++. .++++|+++. +++.+..+++ .+...+... + ++++
T Consensus 5 ~~i~~~i~----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~-----~i~~a~~~~~--~~~~~d~~~~l~~~~~ 73 (194)
T TIGR02081 5 ESILNLIP----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD-----GVLACVARGV--NVIQGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHhcC----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH-----HHHHHHHcCC--eEEEEEhhhcccccCC
Confidence 34555552 3348999999999999988764 3567777654 4444545544 445556643 4 4778
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|+|+.+++|+ .++..+++++.|++++ .+++.|.
T Consensus 74 ~sfD~Vi~~~~l~~~-~d~~~~l~e~~r~~~~---~ii~~p~ 111 (194)
T TIGR02081 74 KSFDYVILSQTLQAT-RNPEEILDEMLRVGRH---AIVSFPN 111 (194)
T ss_pred CCcCEEEEhhHhHcC-cCHHHHHHHHHHhCCe---EEEEcCC
Confidence 899999999999774 6688899999887654 4555443
No 178
>PRK14967 putative methyltransferase; Provisional
Probab=98.87 E-value=2e-08 Score=97.04 Aligned_cols=121 Identities=12% Similarity=0.218 Sum_probs=81.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..++..+. .+|+++|.++.|+..+.++ ++. +...+.++.. ++ ++||+|+++.-+.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhccCCCeeEEEECCCCC
Confidence 35799999999999999887642 4899999999999977764 221 1112233322 33 7999999975333
Q ss_pred cccC------------------cCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEe
Q 010592 427 LYKD------------------KCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 427 ~~~~------------------~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~ 477 (506)
.... ...+..++.++.++|||||.+++... .....++.+.+++.+|.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 1110 00145688999999999999998432 223445666677777765543
No 179
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.87 E-value=1.4e-08 Score=91.96 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=84.3
Q ss_pred ChhhH-HHHHHHHHhhCCC--CCCCCCEEEEECCCCChhHHHHhhCC----cEEEecCccchHHHHHHHHHHcCCC--eE
Q 010592 81 FPQGA-DKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVP--AV 151 (506)
Q Consensus 81 f~~~~-~~~~~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~----v~~vdis~~di~~~~~~~a~~~~~~--~~ 151 (506)
|+..+ +..++-+.+.+.. ......+|||+|||.|.+...|++.+ .+++|.|+..+.- +.+.|..++.+ +.
T Consensus 43 Fg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I~ 121 (227)
T KOG1271|consen 43 FGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNIAERDGFSNEIR 121 (227)
T ss_pred cCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHHHHhcCCCccee
Confidence 44444 3444444444420 11222389999999999999999873 6778887754432 34556666666 78
Q ss_pred EEEeccccCCCCCCCeeEEEEcCccc--ccCCC-----hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 152 IGVLGTIKMPYASRAFDMAHCSRCLI--PWGAN-----DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 152 ~~~~d~~~lp~~~~sfDlV~~~~~l~--~~~~~-----~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|.+.|+..-.+..+.||+|+--.++- .+.++ +..++..+.++|+|||+|+++....
T Consensus 122 f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 122 FQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred EEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 89999877677788999998543332 11211 1357889999999999999986533
No 180
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.87 E-value=5e-08 Score=101.07 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~ 159 (506)
..+.+++.+.+.++ ++.+|||+|||+|.++..++.. .++++|+|+.++..+..+ +...+.++.+...|...
T Consensus 237 eTE~LVe~aL~~l~----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 237 ETEHLVEAVLARLP----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFD 311 (423)
T ss_pred cHHHHHHHhhhccC----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhc
Confidence 34666666665552 2348999999999999888753 488999998777555443 34445667777777654
Q ss_pred CCCC-CCCeeEEEEcCcccccCC--------------------Ch----HHHHHHHHHhcCCCeEEEEEcC
Q 010592 160 MPYA-SRAFDMAHCSRCLIPWGA--------------------ND----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp~~-~~sfDlV~~~~~l~~~~~--------------------~~----~~~l~e~~rvLkPGG~li~~~p 205 (506)
..++ .++||+|+|+.....-.. +. ..++.++.+.|+|||.+++...
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3332 458999999865422110 00 2566777889999999998754
No 181
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.86 E-value=1.6e-08 Score=102.39 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=76.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~ 163 (506)
+.+.+.+.. .+..+|||||||+|.++..++++ .++++|+ +.++.. ..+.+.+.+.. +.+...|....+++
T Consensus 139 ~~l~~~~~~--~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~-a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKL--DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL-VNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCC--CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH-HHHHHHhCCccceEEEEecCccCCCCC
Confidence 334444433 33459999999999999999876 3667776 333322 22333444443 56677777665665
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +|+|+++.++++|.++. ..+++++.++|+|||.+++..
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 69999999988876543 679999999999999999974
No 182
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.86 E-value=5.6e-08 Score=91.93 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=78.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCCCceeE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYPRTYDL 418 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p~s~Dl 418 (506)
.+......+|||+|||+|.++..++... ....|+++|.+++|++.+.++ ++ ..++..+.+. +.....+|.
T Consensus 35 ~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 35 QLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDR 112 (196)
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCE
Confidence 3343445689999999999988887531 125899999999999988764 32 1222222322 222234677
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-hhHHHHHHHHhcC---CceEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGM---RWDTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~---~w~~~ 475 (506)
++.. ...++..++.++.|+|||||++++.... +...++.+.++.+ +|++.
T Consensus 113 v~~~-------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
T PRK07402 113 VCIE-------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVV 166 (196)
T ss_pred EEEE-------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEE
Confidence 6552 1235688999999999999999997654 2444555556554 45544
No 183
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.85 E-value=3.5e-08 Score=95.32 Aligned_cols=148 Identities=13% Similarity=0.210 Sum_probs=104.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCC----C-Ccee
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTY----P-RTYD 417 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~----p-~s~D 417 (506)
.+......+|||+|||+|..+-.|+++--. ..+++++..+.|.+.|.+-- +...++-.+.++..+ + .+||
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 344444788999999999999999887322 68999999999999887642 211222223343332 2 6799
Q ss_pred EEEEccccc---------------cccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC--
Q 010592 418 LIHAHGLFS---------------LYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE-- 480 (506)
Q Consensus 418 lv~~~~~~~---------------~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~-- 480 (506)
+|.|+-=|- +..-.+++++++.-..++|||||++.+--+.+.+.++-.++++.+|....+.-.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 999964433 122245678899999999999999999999998999999999999987633222
Q ss_pred -CCCCCCeEEEEEEec
Q 010592 481 -DGPLVPEKILVAVKQ 495 (506)
Q Consensus 481 -~~~~~~~~~l~~~k~ 495 (506)
.+.....+++.++|.
T Consensus 198 ~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 198 KIGKAANRVLVEAIKG 213 (248)
T ss_pred CCCCcceEEEEEEecC
Confidence 233345666777663
No 184
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=2.4e-08 Score=95.83 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHH------------HHHcCCCeEEEEeccccCCCC---CC
Q 010592 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQF------------ALERGVPAVIGVLGTIKMPYA---SR 165 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~------------a~~~~~~~~~~~~d~~~lp~~---~~ 165 (506)
+.+||+.|||.|.-+.+|+++| |+++|+|+.-+.....+. ...++..+.+.++|...++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 4589999999999999999985 788888876554332211 011345678889999888642 26
Q ss_pred CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.||+|+-..+++++.++. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 899999888888887665 789999999999999988865
No 185
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.84 E-value=3.3e-08 Score=95.49 Aligned_cols=125 Identities=21% Similarity=0.320 Sum_probs=85.0
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-CCCeEEE
Q 010592 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIG 153 (506)
Q Consensus 79 ~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~-~~~~~~~ 153 (506)
..|.-+.+..+ +..+.+... ..+|||+|||+|..+..|+++ .++++++.+.+...++...+... ...+.+.
T Consensus 25 ~~~~~~~DaiL--L~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 25 CGFRYGTDAIL--LAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred CccccccHHHH--HHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe
Confidence 34445555553 566664433 569999999999999999987 48889888766655554444421 1135566
Q ss_pred EeccccCC--CCCCCeeEEEEcCcccccCCC-----------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 154 VLGTIKMP--YASRAFDMAHCSRCLIPWGAN-----------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 154 ~~d~~~lp--~~~~sfDlV~~~~~l~~~~~~-----------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..|...+. ....+||+|+|+.-+..-... .+.+++.+.++|||||++.++.++.
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 66765543 334579999998765432222 1367889999999999999997654
No 186
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.84 E-value=2.9e-08 Score=95.04 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~ 164 (506)
....+.+.+... ++.+|||+|||+|.++..|+.. .++++|+++.++..+...+.. .+. ++.+...|......+.
T Consensus 66 ~~~~l~~~l~~~--~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 66 MVARMTELLELK--PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHhcCCC--CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcC
Confidence 334455555433 3459999999999998877765 588899987655444433332 233 3566666654322234
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++.....+ +..++.+.|+|||.+++...
T Consensus 143 ~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 78999999775533 24667899999999999754
No 187
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.84 E-value=1.6e-08 Score=83.16 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=70.3
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC-CCCCeeEEEEcCcccccC
Q 010592 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY-ASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~-~~~sfDlV~~~~~l~~~~ 180 (506)
+|||+|||.|.++..++.. .+.++|+++..+................+...+...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999988873 578888876544322211111122345666666655543 567899999999875534
Q ss_pred CChHHHHHHHHHhcCCCeEEEEE
Q 010592 181 ANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 45589999999999999999986
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.84 E-value=3e-08 Score=95.55 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=98.2
Q ss_pred cCCCCCCChhhHHHHHHHHHhh-CC-CCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC
Q 010592 74 FPGGGTQFPQGADKYIDQLASV-IP-IKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~-l~-~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~ 149 (506)
+.+.|.+|--..+++...+... .. .......++||||+|.|..+..++.. .|.++++|+.| ...-.++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-----r~rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-----RWRLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-----HHHHHhCCCe
Confidence 3456666665566664444322 11 11124568999999999999999875 68888887654 3444556654
Q ss_pred eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc--CCCCcccchh-cccCChHHhHHH
Q 010592 150 AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG--PPINWKTNYK-AWQRPKEELQEE 226 (506)
Q Consensus 150 ~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~--p~~~~~~~~~-~~~~~~~~~~~~ 226 (506)
+. +..++.-.+.+||+|.|.+++-. ..+|..+|++|.+.|+|+|.++++. |-..+.+.-. .+.++.+.+.-.
T Consensus 139 vl----~~~~w~~~~~~fDvIscLNvLDR-c~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~ 213 (265)
T PF05219_consen 139 VL----DIDDWQQTDFKFDVISCLNVLDR-CDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK 213 (265)
T ss_pred EE----ehhhhhccCCceEEEeehhhhhc-cCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence 22 33333333568999999998854 7788999999999999999999964 5444444333 345554444333
Q ss_pred HHHHHHHHHhc
Q 010592 227 QRKIEEIANLL 237 (506)
Q Consensus 227 ~~~l~~l~~~~ 237 (506)
...+++....+
T Consensus 214 g~~~E~~v~~l 224 (265)
T PF05219_consen 214 GATFEEQVSSL 224 (265)
T ss_pred CCcHHHHHHHH
Confidence 33444444443
No 189
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.83 E-value=6e-08 Score=96.45 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=90.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---CccceeccccccC-CCC-CCceeEEEEccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEAF-STY-PRTYDLIHAHGLFS 426 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---g~~~~~~~~~~~~-~~~-p~s~Dlv~~~~~~~ 426 (506)
+..+|||+|||+|.++..|+... ...+|+++|.++.+++.|.+. +....+...+.++ ..+ +++||+|.++.-+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 34579999999999999998753 235899999999999988875 2212222222332 222 37999999853222
Q ss_pred ccc-------------Cc----------CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCC
Q 010592 427 LYK-------------DK----------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 427 ~~~-------------~~----------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
... +. .....++.++.++|||||++++.-.......++.++.+.+|.......+ -.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d-~~ 265 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD-LA 265 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC-CC
Confidence 000 00 0124688899999999999999655555677888888888863322222 11
Q ss_pred CCCeEEEEEEe
Q 010592 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
+...+++++|
T Consensus 266 -~~~r~~~~~~ 275 (275)
T PRK09328 266 -GRDRVVLGRR 275 (275)
T ss_pred -CCceEEEEEC
Confidence 3556666654
No 190
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.83 E-value=2.8e-08 Score=97.36 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=85.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~~~~~ 427 (506)
.+|||+|||+|.++..+++.. ...+++++|.++.+++.+.+. ++ ..+...+.++ ..++ ++||+|.++.-+..
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 479999999999999998742 125899999999999988764 33 1223333343 2343 89999999654431
Q ss_pred ccC-----cC------------------CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 428 YKD-----KC------------------NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 428 ~~~-----~~------------------~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
... .. ....++.++.|+|||||.+++........++++++++.+|+..
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 110 00 0236789999999999999998766667889999999999744
No 191
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.82 E-value=1.5e-08 Score=93.67 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=77.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~ 426 (506)
...+|||+|||+|.++..++.... ...|+++|.++++++.+.+. ++....-.++.-+...+ ..||+|.|+-=|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 456799999999999999988643 35699999999999988663 22211111233344445 9999999975544
Q ss_pred cccC--cCCHHHHHHHHhhhccCCcEEEE--EeChhhHHHHHHHHh
Q 010592 427 LYKD--KCNIEDILLEMDRILRPEGAIII--RDEVDEIIKVKKIVG 468 (506)
Q Consensus 427 ~~~~--~~~~~~~l~e~~RvLrPgG~~ii--~d~~~~~~~~~~~~~ 468 (506)
.... ...+..++.+..+.|||||.|++ .........|++++.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 2221 01246799999999999998855 445555555666555
No 192
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.82 E-value=6.7e-08 Score=91.58 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcC--CCeEEEEecccc-CCCCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...+ ..+.+...+... ++...+.||.|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 4459999999999998887542 48999998876654433 333344 235555566644 33334689999985
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ..+...+++++.++|||||++++...
T Consensus 119 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 119 GG----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 42 23457899999999999999998643
No 193
>PTZ00146 fibrillarin; Provisional
Probab=98.81 E-value=2.1e-08 Score=99.23 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeEEEE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---MPYASRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~---lp~~~~sfDlV~~ 172 (506)
.++.+|||+|||+|.++..+++. .|.++|+++.+. +.+++.+.++ .++...+.|+.. +.....+||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 34569999999999999999886 389999987543 3455555544 345666666642 2223458999999
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
... . .++...++.++.++|||||+|++..
T Consensus 209 Dva--~-pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 209 DVA--Q-PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred eCC--C-cchHHHHHHHHHHhccCCCEEEEEE
Confidence 763 2 2333567789999999999999964
No 194
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.81 E-value=2.4e-08 Score=101.59 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH------c----CCCeEEEEecccc------CCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE------R----GVPAVIGVLGTIK------MPY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~------~----~~~~~~~~~d~~~------lp~ 162 (506)
.+.+|||+|||-|.-....... .++++|++...+.++..+...- + ...+.+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5679999999988766655554 4789999887776666555211 1 1345666666532 222
Q ss_pred CCCCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....||+|-|.+++|+..... ..+|..+...|+|||+|+.++|..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 235999999999998766655 468999999999999999998754
No 195
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.81 E-value=6e-08 Score=97.08 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=84.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcccc-
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLF- 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~~~- 425 (506)
..+|||+|||+|.++..|+... ...+|+++|.++.+++.|.+. |+...+...+.++ ..++ ++||+|.++-=+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 3579999999999999998752 135899999999999988775 3322223333443 3344 689999996211
Q ss_pred -----cccc---CcC-------------CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeec
Q 010592 426 -----SLYK---DKC-------------NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 426 -----~~~~---~~~-------------~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.... +.. ....++.++.++|+|||++++.-.... +.+++++...+|.-...+.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 1000 000 124678999999999999998665433 6888888877766444433
No 196
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.81 E-value=2.4e-09 Score=100.14 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc-cCC-CCCCCeeEEEEcCcc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMP-YASRAFDMAHCSRCL 176 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~-~lp-~~~~sfDlV~~~~~l 176 (506)
+..+++||+|||||-.+..|... .++++|| |++|+..|.+++.-....+++.. .++ ..+..||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDi-----S~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDI-----SENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCch-----hHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34679999999999999998775 4666655 56677778888765555555543 333 456789999999998
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+ ..+.+.++.-+...|+|||.|.||+
T Consensus 199 ~Y-lG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PY-LGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred Hh-hcchhhHHHHHHHhcCCCceEEEEe
Confidence 65 4567899999999999999999986
No 197
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.80 E-value=5e-08 Score=91.44 Aligned_cols=162 Identities=19% Similarity=0.295 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHH-HHHHcCCCeEE--EEecc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQ-FALERGVPAVI--GVLGT 157 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~di~~~~~~-~a~~~~~~~~~--~~~d~ 157 (506)
.+.+.+.+.+.++.. +.+|||||||||..+.+++++ . ....|.++.-. ..++ ...+.+.+... ...|+
T Consensus 11 k~pIl~vL~~~l~~~---~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~--~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 11 KDPILEVLKQYLPDS---GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR--PSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred HhHHHHHHHHHhCcc---CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH--hhHHHHHHhcCCcccCCCeEeec
Confidence 355666666666322 226999999999999999886 2 23334433211 1222 22333322111 12233
Q ss_pred cc--CCC------CCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCCCcccc-------hhcccCCh
Q 010592 158 IK--MPY------ASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPINWKTN-------YKAWQRPK 220 (506)
Q Consensus 158 ~~--lp~------~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~~~~~~-------~~~~~~~~ 220 (506)
.. .|. ..++||+|+|.+++ |+.+-. +.+++.+.++|+|||.|++.+|...--.. ++.+++..
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 22 232 35689999999987 555433 78999999999999999999876643211 12222211
Q ss_pred ---HHhHHHHHHHHHHHHhcceeeccc-----cCceEEEEe
Q 010592 221 ---EELQEEQRKIEEIANLLCWEKKSE-----KGEIAVWQK 253 (506)
Q Consensus 221 ---~~~~~~~~~l~~l~~~~~w~~~~~-----~~~~~i~~k 253 (506)
-.+++ .+.+..+++.-+++.... ++.+.||+|
T Consensus 165 dp~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 165 DPEWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 12222 345777777766665432 344666665
No 198
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=5.2e-09 Score=97.77 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.....++|||||.|...+.|..++ ++-+|.|..|+... +-++..++.....+.|-+.|+|.+++||+|+++..+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~--~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl- 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSC--RDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL- 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHh--hccCCCceEEEEEecchhcccccccchhhhhhhhhh-
Confidence 344589999999999999999884 57778776555322 223334566777788889999999999999999887
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
||..+.+..+..+...|||+|.|+-+.-.-
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 999999999999999999999999875443
No 199
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.79 E-value=1.2e-08 Score=103.04 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=70.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccc-eeccccccCCC---CCCc-----eeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIG-IYHDWCEAFST---YPRT-----YDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~-~~~~~~~~~~~---~p~s-----~Dlv~ 420 (506)
..+|||+|||+|.++..|++......+|+++|.|++||+.+.++- ... .+...+.++.. ++.. ..+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 357999999999999999875321368999999999999998762 111 12223344432 2222 33555
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+.+.|.+.. ..+...+|.++.++|+|||.|+|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 556666443 445678999999999999999983
No 200
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.79 E-value=1.9e-08 Score=93.87 Aligned_cols=97 Identities=21% Similarity=0.344 Sum_probs=61.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD 168 (506)
+.+.+.+... .....|-|+|||.+.++..+... .|...|+.+. +..+..+|+..+|++++++|
T Consensus 61 d~iI~~l~~~-~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 61 DVIIEWLKKR-PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHhc-CCCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCcee
Confidence 4555555432 23458999999999999887643 4777777432 11255679999999999999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++..+|+ ..+...++.|+.|+|||||.|.+..
T Consensus 125 v~VfcLSLM--GTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 125 VAVFCLSLM--GTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEhhhh--CCCcHHHHHHHHheeccCcEEEEEE
Confidence 999877663 4667999999999999999999974
No 201
>PLN03075 nicotianamine synthase; Provisional
Probab=98.78 E-value=9.5e-08 Score=95.02 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhc-----CccceeccccccCC-CC--CCceeEEEEc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDWCEAFS-TY--PRTYDLIHAH 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~~~~~~-~~--p~s~Dlv~~~ 422 (506)
..++|+|||||.|++.+.+.. .-.....++++|.++++++.|++. |+-..+.....++- .. ...||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678899999999987665543 212235799999999999988763 22111222122221 12 2789999997
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---hHHH-HH-HHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIK-VK-KIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~-~~-~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
++.... ..+...+|..+.|.|||||+|+++---+ .+-. +. ..++ +|++...-+-.++ .-.-+++++|.-
T Consensus 203 -ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~-v~Nsvi~~r~~~ 276 (296)
T PLN03075 203 -ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDE-VINSVIIARKPG 276 (296)
T ss_pred -cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCC-ceeeEEEEEeec
Confidence 555332 3577899999999999999999985321 0000 10 1112 8987766555433 345688899865
No 202
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.77 E-value=6.7e-08 Score=96.85 Aligned_cols=139 Identities=15% Similarity=0.140 Sum_probs=90.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcc----
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHG---- 423 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~---- 423 (506)
.+|||+|||+|.++..|+... ...+|+++|.|++++..|.+. ++...+...+.++ ..++ ..||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 579999999999999998742 125899999999999988874 2211122222222 2234 4899999952
Q ss_pred ---------ccccccCc---------CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHh-cCCceEEEeecCCCCC
Q 010592 424 ---------LFSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG-GMRWDTKMVDHEDGPL 484 (506)
Q Consensus 424 ---------~~~~~~~~---------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~ 484 (506)
++.+..+. ..+..++.+..++|+|||++++.-.......+++++. ..+|....+ ..| -.
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D-~~ 272 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD-LN 272 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC-CC
Confidence 11111100 0234689999999999999999777666778888876 577863322 222 22
Q ss_pred CCeEEEEEEec
Q 010592 485 VPEKILVAVKQ 495 (506)
Q Consensus 485 ~~~~~l~~~k~ 495 (506)
....+++++++
T Consensus 273 g~~R~~~~~~~ 283 (284)
T TIGR00536 273 GKERVVLGFYH 283 (284)
T ss_pred CCceEEEEEec
Confidence 35667777653
No 203
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.77 E-value=1.7e-07 Score=93.24 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=75.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
+.+++.+...+.. .++.+|||+|||+|.++..++.. .++++|+++..+..+..+........+.+...|... +
T Consensus 94 e~l~~~~~~~~~~--~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~ 170 (275)
T PRK09328 94 EELVEWALEALLL--KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-P 170 (275)
T ss_pred HHHHHHHHHhccc--cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-c
Confidence 5565555544422 23458999999999999998865 488999988666544443331122345666666532 3
Q ss_pred CCCCCeeEEEEcCcccccC------C-------------------ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWG------A-------------------NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~------~-------------------~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++.++||+|+++..+.... + ....++.++.++|+|||++++..
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3457899999975432110 0 01357788889999999999964
No 204
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.77 E-value=1.3e-08 Score=96.33 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcC----CCeEEE
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERG----VPAVIG 153 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~~----~~~~~~ 153 (506)
..+-+....-++++....+..+||+||||.|...-.|.+- .+.++|+||..+ ++.+++. ......
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~~~~e~~~~af 127 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSSGYDESRVEAF 127 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhccccchhhhccc
Confidence 3344445566666555444448999999999887777664 377888887533 3333221 111122
Q ss_pred Eecc--c--cCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 154 VLGT--I--KMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 154 ~~d~--~--~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.|. . .-|...+++|.|++.++|....++. ..++.++.++|||||.+++.+...
T Consensus 128 v~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 128 VWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred ceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 2232 2 3356789999999999998776665 799999999999999999986544
No 205
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.76 E-value=4.8e-08 Score=96.05 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=87.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CCCceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p~s~Dlv~~~~~~~~ 427 (506)
..+|||+|||+|.++..++... ...+|+++|.++.+++.|.+. +.--...++.+.++. ....||+|.++-=+.-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3479999999999999887641 125799999999999988764 211111122222221 2367999999643220
Q ss_pred c------c-----C--cC------C----HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCC
Q 010592 428 Y------K-----D--KC------N----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHED 481 (506)
Q Consensus 428 ~------~-----~--~~------~----~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~ 481 (506)
. . + +. + +..++....++|||||.+++.-.......+..++.+.+|...+..++|
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 0 0 0 00 0 236778888999999999997666667789999999999988887775
No 206
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.75 E-value=1.8e-07 Score=93.82 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI 158 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~ 158 (506)
.+.+++.+.+.+... ....+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+.. +.+...|..
T Consensus 98 te~lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQ-NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhc-CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchh
Confidence 466666655444211 12248999999999999999864 588999988666444433 3334443 666666654
Q ss_pred cCCCCCCCeeEEEEcCccccc------------CC------------ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 159 KMPYASRAFDMAHCSRCLIPW------------GA------------NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~------------~~------------~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +++.++||+|+++...... .+ ....++.++.+.|+|||++++...
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 3 3445589999997432211 10 113678889999999999999764
No 207
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.75 E-value=2.1e-08 Score=94.93 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=65.3
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEE-----eccccCCC--CCCCeeEEEEcC
Q 010592 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGV-----LGTIKMPY--ASRAFDMAHCSR 174 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~-----~d~~~lp~--~~~sfDlV~~~~ 174 (506)
+.++|+|||+|.-+..+++. .|+++|+++. |++.+.+.. ++.... .+....++ .++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~-----mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEA-----MLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHH-----HHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 38999999999777777775 7999988764 555665532 222221 12222333 389999999999
Q ss_pred cccccCCChHHHHHHHHHhcCCCe-EEEEE
Q 010592 175 CLIPWGANDGRYMIEVDRVLRPGG-YWVLS 203 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG-~li~~ 203 (506)
|+ ||.+ .+.+++++.|+||+.| .+.+-
T Consensus 109 a~-HWFd-le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AV-HWFD-LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hH-Hhhc-hHHHHHHHHHHcCCCCCEEEEE
Confidence 98 7765 6899999999999866 66554
No 208
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.74 E-value=9.7e-08 Score=89.66 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+|||+|||+|.++..++.+ .++++|+++.+ ....+.+...|....+ ++.++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3458999999999998888764 38999998742 1123455555654432 4567899
Q ss_pred EEEEcCccc---ccCCC-------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLI---PWGAN-------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~---~~~~~-------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|++..+.+ ++..+ ...++.++.++|+|||++++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999864321 11111 2578999999999999999975
No 209
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.74 E-value=6.8e-08 Score=100.09 Aligned_cols=138 Identities=10% Similarity=0.054 Sum_probs=90.4
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCC--CC--CCceeEEEEcccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFS--TY--PRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~--~~--p~s~Dlv~~~~~~~~ 427 (506)
.+|||+|||+|.++..|+... ...+|+++|.|+.|++.|.+.- .-..+...+.++. .+ ..+||+|.|+-=+..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 479999999999998887531 1368999999999999887752 1001222233331 12 268999999653210
Q ss_pred cc-------------------CcCC---HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCC
Q 010592 428 YK-------------------DKCN---IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLV 485 (506)
Q Consensus 428 ~~-------------------~~~~---~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 485 (506)
.. .... +..++.+..+.|+|||.+++.-.....+.+++++.+.+|....+..+-. +
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~--G 409 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA--G 409 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC--C
Confidence 00 0001 2257778889999999999866666778899999988987543333322 3
Q ss_pred CeEEEEEEe
Q 010592 486 PEKILVAVK 494 (506)
Q Consensus 486 ~~~~l~~~k 494 (506)
.+.++++++
T Consensus 410 ~dR~v~~~~ 418 (423)
T PRK14966 410 LDRVTLGKY 418 (423)
T ss_pred CcEEEEEEE
Confidence 466776664
No 210
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.74 E-value=3.2e-08 Score=101.25 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC---CCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY---PRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~---p~s~Dlv~~~~ 423 (506)
.+..+|||.|||+|+++..++..+ ..++++|.++.|+..+... |+.. ++..+.++..+ +++||+|.++.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECC
Confidence 345579999999999987766654 5899999999999977654 3322 12222333333 37999999964
Q ss_pred ccccc--cCc----CCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 424 LFSLY--KDK----CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 424 ~~~~~--~~~----~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
-+... ... .....+|.++.|+|||||++++.-+.. ..+++++++.+| +.
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR-VV 311 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc-ch
Confidence 33211 011 114689999999999999998865432 256677889999 44
No 211
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.74 E-value=1.1e-07 Score=89.85 Aligned_cols=107 Identities=18% Similarity=0.096 Sum_probs=70.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-CCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-MPYAS 164 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~-lp~~~ 164 (506)
.+.+.+... .+.+|||+|||+|.++..++.. .++++|+++.++..+..+. .+.+. ++.+...|+.. ++...
T Consensus 31 ~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~-~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNC-DRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCCeEEEECchHHHHhhCC
Confidence 355555433 3458999999999999888743 4899999987765544333 33333 35566566533 22222
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..+|.|+... ..+...+++++.++|+|||+|++..+
T Consensus 108 ~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 3467665422 22347899999999999999999864
No 212
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.71 E-value=7.1e-08 Score=91.90 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=71.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
+.|.+.|...+ ....|-|+|||.+.++... ...|..+|+.+ ++-.+..+|+.++|++++|.|+
T Consensus 169 d~ii~~ik~r~-~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 169 DVIIRKIKRRP-KNIVIADFGCGEAKIASSE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHhCc-CceEEEecccchhhhhhcc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccE
Confidence 34555553332 3458999999999877521 12578787743 2334567799999999999999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++..+| +..+...++.|++|+|||||.+++..-
T Consensus 232 aV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 232 AVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred EEeeHhh--hcccHHHHHHHHHHHhccCceEEEEeh
Confidence 9986555 456779999999999999999999743
No 213
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.71 E-value=2.8e-08 Score=90.88 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=56.4
Q ss_pred eecCCCcccHHHHHhcCc---------cceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEE
Q 010592 381 VPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAI 451 (506)
Q Consensus 381 ~~~d~~~~~l~~~~~rg~---------~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ 451 (506)
+++|.|++||++|.+|.- +.....-++++|..+++||+|.+..++++. .+...+|.|++|+|||||.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEE
Confidence 478999999999976521 122222234555444899999998888744 57889999999999999999
Q ss_pred EEEeChh
Q 010592 452 IIRDEVD 458 (506)
Q Consensus 452 ii~d~~~ 458 (506)
+|.|-..
T Consensus 78 ~i~d~~~ 84 (160)
T PLN02232 78 SILDFNK 84 (160)
T ss_pred EEEECCC
Confidence 9987543
No 214
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.71 E-value=3.4e-08 Score=90.39 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=60.9
Q ss_pred EEEecCccchHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEE
Q 010592 126 IAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 126 ~~vdis~~di~~~~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
+++|+|+.|+..+..+..... ..++.+.++|+.++|+++++||+|++.++++++ .++..+++|+.|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 367888877765543322111 124678889999999999999999999988664 6789999999999999999998
Q ss_pred Ec
Q 010592 203 SG 204 (506)
Q Consensus 203 ~~ 204 (506)
..
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 64
No 215
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.71 E-value=2.8e-08 Score=97.44 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc------CCCeEEEEecc------ccCCCCCC
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER------GVPAVIGVLGT------IKMPYASR 165 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~------~~~~~~~~~d~------~~lp~~~~ 165 (506)
.++..+||+|||-|.-+...... .++++||+...+..++.+.-.-. -.++.+..+|. ..+++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 34557999999999766666554 47889998766655554332211 13467777775 24566677
Q ss_pred CeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 166 AFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+||+|-|.+++|+-.... ..+|.++.+.|||||+||-+.|..
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 799999999996533333 578999999999999999998865
No 216
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.71 E-value=2.1e-07 Score=93.11 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=70.1
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
..+|||+|||+|.++..++.+ .++++|+++..+..+.. .+...++ .+.+...|... ++++++||+|+++.-.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 358999999999999999875 48899998876654443 3344444 35666666532 2345689999997432
Q ss_pred cc------c----CCCh--------------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 177 IP------W----GAND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~------~----~~~~--------------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. . ..++ ..++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 0 0011 3678889999999999999864
No 217
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.69 E-value=5.6e-07 Score=84.11 Aligned_cols=124 Identities=17% Similarity=0.118 Sum_probs=71.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~ 432 (506)
.-.|-|+|||.+.+|..+... ..|...|+-... ++ + +.-+ ...+|--++++|++.+...+ =..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~n-----~~-V--tacd-ia~vPL~~~svDv~VfcLSL----MGT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAPN-----PR-V--TACD-IANVPLEDESVDVAVFCLSL----MGT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-SS-----TT-E--EES--TTS-S--TT-EEEEEEES-------SS
T ss_pred CEEEEECCCchHHHHHhcccC----ceEEEeeccCCC-----CC-E--EEec-CccCcCCCCceeEEEEEhhh----hCC
Confidence 347999999999999887643 345555554110 11 1 1111 13344444999987763333 256
Q ss_pred CHHHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010592 433 NIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
+..+.|.|..|||||||.|+|.+-.. .++...+.+++++++....|.. +.-++++.-+|.-
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~---n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES---NKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-----STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC---CCeEEEEEEEEcC
Confidence 78899999999999999999977543 5566777799999997775544 2346666666654
No 218
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.69 E-value=8.8e-08 Score=92.35 Aligned_cols=118 Identities=17% Similarity=0.340 Sum_probs=89.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-ceeccccccCCCCCCceeEEEEccccccccC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
...++||+|+|-|+....|+.- .-+|.+.++|+.|...-.+||.. -...+|. .-+..||+|-|-+++ +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~----~~~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQ----QTDFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhh----ccCCceEEEeehhhh----h
Confidence 4568999999999999999763 35699999999999999999962 1222233 235789999996666 5
Q ss_pred cC-CHHHHHHHHhhhccCCcEEEEE---------------eC-------------hhhHHHHHHHHhcCCceEEEeecC
Q 010592 431 KC-NIEDILLEMDRILRPEGAIIIR---------------DE-------------VDEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 431 ~~-~~~~~l~e~~RvLrPgG~~ii~---------------d~-------------~~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
|| ++..+|.+|++.|+|+|.++|. +. .+.+..+-++++.+++++......
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 88 5778999999999999999992 11 013344447799999998765443
No 219
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.68 E-value=7.6e-08 Score=91.70 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=71.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----C-cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~-v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
......+.+.+.+.+ +.+|||||||+|++++.|+.. + |+++|+.+.....+...++.....++.+..+|...-
T Consensus 58 P~~~a~~l~~L~l~p--g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKP--GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-T--T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCC--CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 445566777776554 459999999999999988864 2 778998875444444444433333567777776433
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
--....||.|++....... -..+.+.||+||++++-..
T Consensus 136 ~~~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred cccCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEEc
Confidence 2235689999998765321 2557778999999999643
No 220
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.68 E-value=1.8e-07 Score=94.56 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=79.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcccc--
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLF-- 425 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~Dlv~~~~~~-- 425 (506)
.+|||+|||+|.++..|+... ...+|+++|.++.+++.|.+. ++...+...+.++ ..++ ++||+|.|+-=+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 579999999999999998742 236899999999999988775 3322233334443 2344 689999996211
Q ss_pred -----------ccccCc------C---CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCce
Q 010592 426 -----------SLYKDK------C---NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 426 -----------~~~~~~------~---~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~ 473 (506)
.+..+. . ....++.++.++|+|||++++.-... ...+.+++...++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCE
Confidence 111100 0 12468999999999999999964433 44588887766543
No 221
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.67 E-value=8.9e-08 Score=91.66 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=67.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--CceeEE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP--RTYDLI 419 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p--~s~Dlv 419 (506)
.+...+..+|||+|||+|.++..|+... ..|+++|.+++++..+.++ |+. .+...+.++ ..++ +.||+|
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCEE
Confidence 3444456789999999999998887753 3799999999999988765 221 111122222 2222 789999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+++..+. .+..++.+.|+|||.+++.-
T Consensus 149 ~~~~~~~---------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAP---------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCch---------hhhHHHHHhcCCCcEEEEEE
Confidence 9955443 34567889999999999853
No 222
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.67 E-value=1e-07 Score=102.78 Aligned_cols=123 Identities=16% Similarity=0.203 Sum_probs=84.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-CceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~s~Dlv~~~~~~~ 426 (506)
..+|||+|||+|.++..|+..- ....|+++|.|+.+++.|.+. ++...+...+.+ +..++ +.||+|+|+.=+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3579999999999998887531 125899999999999998875 322112222233 22333 6899999953211
Q ss_pred c--------------cc------CcCC---HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 427 L--------------YK------DKCN---IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 427 ~--------------~~------~~~~---~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
. .. .... +..++.++.++|+|||.+++.-.....+.+.+++.+.+|....
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIES 290 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceE
Confidence 0 00 0011 2347889999999999999976656678899998888997543
No 223
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=1.8e-07 Score=94.94 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=72.4
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp 161 (506)
+...+.+.+... ++.+|||||||+|.++..+++. .|+++|+++.++..+... +...+.. +.+...|....+
T Consensus 68 l~a~ll~~L~i~--~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~-l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCC--CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCChhhcc
Confidence 334455555443 3458999999999999998864 288999988766544433 3333443 566666765555
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...++||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 44568999999754422 2345778999999998854
No 224
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.67 E-value=7.5e-08 Score=79.09 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=69.5
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---cCc---cceeccccccCCC-CCCceeEEEEcccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGL---IGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---rg~---~~~~~~~~~~~~~-~p~s~Dlv~~~~~~~~ 427 (506)
+|||+|||+|.++..+... ...+++++|.+++++..+.+ .+. +..++.-..+... .+..||+|++...+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999988872 24689999999888887762 121 1111111112221 2478999999888874
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
. ......++..+.+.|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 446678999999999999999986
No 225
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.66 E-value=2.4e-08 Score=94.01 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
...++||.|+|.|+.+..|+-. .|..++..+..+..+...+......-..+.+...+....+.++||+|.+.+|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4568999999999999988765 3555555443333322221112222245556666666545679999999999999
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
+.++. -.+|+.+...|+|+|.+++-
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 87655 79999999999999999994
No 226
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.65 E-value=3.7e-07 Score=92.31 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=69.6
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+. .+.+...|... +++.++||+|+|+....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 58999999999999999865 488999988766544433 333443 36677667533 23456899999974321
Q ss_pred c------------cCC--------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 P------------WGA--------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~------------~~~--------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +.+ + ...++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 000 0 13678999999999999999754
No 227
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.3e-07 Score=92.50 Aligned_cols=137 Identities=20% Similarity=0.277 Sum_probs=91.5
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEccccc-c--
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFS-L-- 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~-~-- 427 (506)
+|||||||+|-.|.+|+.... ..+|+++|.|++.+..|.+- |+.....--+.-|+.+...||+|.|+-=.- .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 799999999999999988642 36999999999999988664 431111111122444557999999942111 0
Q ss_pred --cc--------------CcC---CHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCc-eEEEeecCCCCCCCe
Q 010592 428 --YK--------------DKC---NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRW-DTKMVDHEDGPLVPE 487 (506)
Q Consensus 428 --~~--------------~~~---~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~ 487 (506)
.. ..+ -...++.+..++|+|||.+++.-.....+.+++++.+.++ ..... ..+ -...+
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~-~~d-~~g~~ 269 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVET-LKD-LFGRD 269 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEE-Eec-CCCce
Confidence 00 001 1125889999999999999998887778899999999994 32222 222 22356
Q ss_pred EEEEEEe
Q 010592 488 KILVAVK 494 (506)
Q Consensus 488 ~~l~~~k 494 (506)
.++++++
T Consensus 270 rv~~~~~ 276 (280)
T COG2890 270 RVVLAKL 276 (280)
T ss_pred EEEEEEe
Confidence 6666554
No 228
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.64 E-value=7.7e-07 Score=87.50 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~ 158 (506)
...+.+++.+...+... ....+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+ ..+...|..
T Consensus 68 ~~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeech
Confidence 34466767666655311 12348999999999999988764 488999988766544433 33333 345556654
Q ss_pred c-CCC-CCCCeeEEEEcCcccccC------C---------------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 159 K-MPY-ASRAFDMAHCSRCLIPWG------A---------------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 ~-lp~-~~~sfDlV~~~~~l~~~~------~---------------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ++- ..++||+|+++.-..... + + ...++..+.++|+|||.+++...
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3 221 135799999986443210 0 0 12677778899999999999864
No 229
>PRK04457 spermidine synthase; Provisional
Probab=98.64 E-value=3.9e-07 Score=90.12 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=71.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Ccc---ceecccccc----CCCCCCceeEEEEcc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLI---GIYHDWCEA----FSTYPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~---~~~~~~~~~----~~~~p~s~Dlv~~~~ 423 (506)
..++|||||||+|.++..++... ....++++|.+++++++|.+. ++. ..++-.+.+ +...+.+||+|.++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 45789999999999999887642 246899999999999999886 221 112222233 23345789999985
Q ss_pred ccccc--cCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 424 LFSLY--KDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 424 ~~~~~--~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.|... ........++.++.++|+|||.++|.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 34321 11112368999999999999999983
No 230
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.60 E-value=1.5e-07 Score=86.88 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
+.+.+.+... .+.+|||+|||+|.++..++++ .++++|+++.++......... ..++.+...|+..+++++.+|
T Consensus 3 ~~i~~~~~~~--~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLR--PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCC--CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 3455555433 3458999999999999999987 588999987655433322221 235677788888888877789
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHh--cCCCeEEEEE
Q 010592 168 DMAHCSRCLIPWGANDGRYMIEVDRV--LRPGGYWVLS 203 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rv--LkPGG~li~~ 203 (506)
|.|+++..+ +.. ...+..+.+. +.++|.|++.
T Consensus 79 d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 79 YKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 999998654 321 3344444432 4578888875
No 231
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.9e-07 Score=85.62 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=70.8
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~ 164 (506)
....+.+.+...+ +.+|||||||+|+.++.|++. .|.+++..+.-...+..++ ...+. ++.+.+.|...---+.
T Consensus 60 ~vA~m~~~L~~~~--g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L-~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELKP--GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNL-ETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCCC--CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHH-HHcCCCceEEEECCcccCCCCC
Confidence 4455677775544 459999999999999999886 5788887653222222222 23344 4666666653322234
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..||.|+........ + ..+.+-|||||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~v-P------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEV-P------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCC-C------HHHHHhcccCCEEEEEEc
Confidence 689999987765332 2 456678999999999643
No 232
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.60 E-value=3.6e-07 Score=96.84 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=76.9
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCC
Q 010592 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASR 165 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~ 165 (506)
+...+.. .++.+|||+|||+|..+..+++. .++++|+++.++.... +.+...+..+.+...|...++ +..+
T Consensus 236 ~~~~l~~--~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 236 AATLLAP--QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHcCC--CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccC
Confidence 3444433 34569999999999999888865 4889999887765444 344445666677777876654 3457
Q ss_pred CeeEEEEcCccc-----------ccCCCh----------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 166 AFDMAHCSRCLI-----------PWGAND----------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~-----------~~~~~~----------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||.|++..... .|...+ ..+|.++.++|||||++++++..
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 899999532110 111111 36899999999999999998743
No 233
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=1.7e-07 Score=88.73 Aligned_cols=102 Identities=13% Similarity=0.219 Sum_probs=76.9
Q ss_pred CceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcCc------cceeccccccC-CC--CCCceeEEEEc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAF-ST--YPRTYDLIHAH 422 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~~~~~-~~--~p~s~Dlv~~~ 422 (506)
..+||.+|||.|....-|.+. +-....|.+.|.|++.+++..++-. -+.+.|.+.+= .. .++++|+|.+-
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 337999999999976666542 2223789999999999998887632 23444433322 11 23999999999
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+|+... ...+..++..+.|+|||||.|++||
T Consensus 152 FvLSAi~-pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 152 FVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEeccC-hHHHHHHHHHHHHHhCCCcEEEEee
Confidence 9999655 5578899999999999999999986
No 234
>PRK00811 spermidine synthase; Provisional
Probab=98.59 E-value=6.8e-07 Score=89.49 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH-----cCCCeEEEEecccc-CCCCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE-----RGVPAVIGVLGTIK-MPYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~-----~~~~~~~~~~d~~~-lp~~~~sfDlV~ 171 (506)
.+.+||+||||.|..+..++++ .++++|+++.++..+...+..- ...++.+...|... +....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4568999999999999998876 4789999886665444333221 12346677777643 333467899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+...- ++... ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 85432 32221 1577899999999999999864
No 235
>PRK01581 speE spermidine synthase; Validated
Probab=98.56 E-value=8.8e-07 Score=90.19 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=92.7
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Ccc---------ceeccc-ccc---CCCCCC
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLI---------GIYHDW-CEA---FSTYPR 414 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~---------~~~~~~-~~~---~~~~p~ 414 (506)
.....++||++|||+|..++.+.+.+ .+.+|+.+|++++|+++|.+. .+. ..+.-. +.. +...++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 34456799999999999888888753 357899999999999999862 110 011001 111 222347
Q ss_pred ceeEEEEcccccccc--CcCCHHHHHHHHhhhccCCcEEEEEeChh-----hHHHHHHHHhcCCceEEEeec-CCCCCCC
Q 010592 415 TYDLIHAHGLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDH-EDGPLVP 486 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~--~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~~~~~~w~~~~~~~-~~~~~~~ 486 (506)
.||+|.++..-.... ...--..++..+.+.|+|||.+++....+ ....+.+.+++....+..... ...-...
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 899999963211100 01111468899999999999999965432 223355556666666553322 2111124
Q ss_pred eEEEEEEeccccc
Q 010592 487 EKILVAVKQYWVA 499 (506)
Q Consensus 487 ~~~l~~~k~~w~~ 499 (506)
+.+++|.|.-...
T Consensus 306 WgF~~as~~~~~~ 318 (374)
T PRK01581 306 WGFHIAANSAYVL 318 (374)
T ss_pred eEEEEEeCCcccc
Confidence 8888998865543
No 236
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.55 E-value=8.1e-08 Score=82.52 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=68.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c---cceeccccccCC-CCC-CceeEEEEccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L---IGIYHDWCEAFS-TYP-RTYDLIHAHGL 424 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~---~~~~~~~~~~~~-~~p-~s~Dlv~~~~~ 424 (506)
.+|||+|||+|.++.++.+.+ ..+++++|.++..++.++.+- + +..++.-..++. .++ +.||+|.++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 369999999999999998865 479999999999999888752 1 111111111222 233 99999999887
Q ss_pred cccccC-----cCCHHHHHHHHhhhccCCcEEEEE
Q 010592 425 FSLYKD-----KCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 425 ~~~~~~-----~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|..... +.....++.++.|+|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 773211 112357899999999999999874
No 237
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.53 E-value=5.5e-07 Score=95.41 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---CC--CCCceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---ST--YPRTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~~--~p~s~Dlv 419 (506)
...+..+|||||||+|+.+.++++.-. ...|+++|.+++++..+.++ |+...+...+.+. +. .+.+||.|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 334457899999999999999887421 35899999999999987665 3321111112222 11 13789999
Q ss_pred EEc------cccccccCcCC----------------HHHHHHHHhhhccCCcEEEEEe-C---hhhHHHHHHHHhc
Q 010592 420 HAH------GLFSLYKDKCN----------------IEDILLEMDRILRPEGAIIIRD-E---VDEIIKVKKIVGG 469 (506)
Q Consensus 420 ~~~------~~~~~~~~~~~----------------~~~~l~e~~RvLrPgG~~ii~d-~---~~~~~~~~~~~~~ 469 (506)
.++ +++. +..+ -..+|.++.|+|||||+|+++. + .+-...++.++++
T Consensus 314 llDaPcSg~G~~~---~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 314 LLDAPCSATGVIR---RHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred EEcCCCCCCcccc---cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 963 2333 2212 1369999999999999999963 2 2344556666554
No 238
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=1.9e-07 Score=88.25 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=79.6
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-----C-CCceeEEEEccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-----Y-PRTYDLIHAHGL 424 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-----~-p~s~Dlv~~~~~ 424 (506)
.+||||||.|.|...++... ...|++++|...+.+..|..+ ++ .+++.++.+... + |+++|-|+...=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 69999999999999998642 237999999998888766655 33 334444433322 3 389999998211
Q ss_pred cc-----cccCcCCHHHHHHHHhhhccCCcEEEE-EeChhhHHHHHHHHhc--CCceEE
Q 010592 425 FS-----LYKDKCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGG--MRWDTK 475 (506)
Q Consensus 425 ~~-----~~~~~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~--~~w~~~ 475 (506)
=. |.+.|---+..|.++.|+|+|||.|.+ +|..++.+.+.+.+.. -.++..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 11 122222225799999999999999999 5666788888887666 366644
No 239
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=5.3e-07 Score=95.75 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC----CCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP----YASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp----~~~~sfDlV~ 171 (506)
++.+|||+|||+|..+..+++. .++++|+++.++.....+ +...|.. +.+...|...++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4568999999999999888764 389999988776544433 3444553 566777776665 4467899999
Q ss_pred Ec------CcccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 172 CS------RCLIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 172 ~~------~~l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+. .++.+ .++ ...+|.++.++|||||+|+.++..
T Consensus 331 ~DaPCSg~G~~~r-~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHR-HPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCccccccc-CcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 62 12211 111 247799999999999999988643
No 240
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.53 E-value=4.4e-07 Score=88.63 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
...+|||||+|.|.++..++++ .++..|+ ...++.+.+ ...+.+..+|.. -++|. +|+|+..+++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3458999999999999999876 3566666 334444444 556888888887 66665 99999999999
Q ss_pred ccCCCh-HHHHHHHHHhcCCC--eEEEEEc
Q 010592 178 PWGAND-GRYMIEVDRVLRPG--GYWVLSG 204 (506)
Q Consensus 178 ~~~~~~-~~~l~e~~rvLkPG--G~li~~~ 204 (506)
+|.++. ..+|+++.+.|+|| |.|++..
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 997755 78999999999999 9999964
No 241
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.52 E-value=2.8e-07 Score=87.00 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=70.5
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CC--CCCCCeeEEEEcCccc
Q 010592 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MP--YASRAFDMAHCSRCLI 177 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~-lp--~~~~sfDlV~~~~~l~ 177 (506)
.+||||||.|.+...++.. .++|+|+...-+..+..+.......++.+...|+.. +. ++++++|.|+..+. .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 8999999999999999876 589999988766555555444444456667677654 22 56789999998764 3
Q ss_pred ccCCCh--------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 178 PWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~--------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|.... ..++..+.++|+|||.|.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 554322 3899999999999999999864
No 242
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.51 E-value=3.7e-07 Score=92.57 Aligned_cols=96 Identities=15% Similarity=0.056 Sum_probs=65.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC---CCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY---PRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~---p~s~Dlv~~~~ 423 (506)
.+..+|||+|||+|.+++.|++.......|+++|.+++|++.|.++ |+ ..++..+.+.... ...||+|++..
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECC
Confidence 3446899999999999999987421113599999999999988763 33 2223333443221 26799999853
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+. .+...+.++|||||.+++-..
T Consensus 158 g~~---------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 158 GVD---------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred chH---------HhHHHHHHhcCCCCEEEEEeC
Confidence 332 244567889999999998543
No 243
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.51 E-value=4.4e-06 Score=76.99 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=85.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---c-Cccceecccccc----CCCCCCceeE
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---R-GLIGIYHDWCEA----FSTYPRTYDL 418 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---r-g~~~~~~~~~~~----~~~~p~s~Dl 418 (506)
.+...+...++|+|||||+.+..++.. .....|+++|.++++++.+.. | |+ .++.-.-.+ ++.+| +||.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~-~~da 105 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLP-SPDA 105 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCC-CCCE
Confidence 455566668999999999998888732 234799999998888886544 2 32 222111222 33344 8999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe-ChhhHHHHHHHHhcCCc-eEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRW-DTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w-~~~ 475 (506)
|+.... -.++.+|......|||||.+++.- +++....+-+.++++++ ++.
T Consensus 106 iFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 106 IFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred EEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 998443 267889999999999999999964 56677778888999999 544
No 244
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.51 E-value=6.7e-07 Score=94.76 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=74.4
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEE--EEeccccCCC--C
Q 010592 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVLGTIKMPY--A 163 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~--~~~d~~~lp~--~ 163 (506)
+...+.. .++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...+..+.+ ...+....++ +
T Consensus 230 ~~~~L~~--~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 230 VATWLAP--QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHhCC--CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEecccccccccccc
Confidence 4444532 34569999999999999888764 4899999887665444 334445555433 4444444443 4
Q ss_pred CCCeeEEEEc------CcccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 164 SRAFDMAHCS------RCLIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~------~~l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.++||.|++. .++.+ .++ ...+|.++.++|||||.|++++...
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~-~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRR-HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccCEEEEcCCCCCCccccc-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6789999952 12211 121 2478999999999999999987544
No 245
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=3.3e-07 Score=97.67 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEc--
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCS-- 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~-- 173 (506)
++.+|||+|||+|..+..+++. .++++|+++.++.... +.+...++. +.+...|+..++ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 4568999999999988777653 4899999987775544 344445554 566677776654 45789999952
Q ss_pred --Cccc-------ccCCC----------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 174 --RCLI-------PWGAN----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 --~~l~-------~~~~~----------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..-. .|... ...+|.++.++|||||++++++...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1110 11111 1358999999999999999987544
No 246
>PRK04457 spermidine synthase; Provisional
Probab=98.51 E-value=1.2e-06 Score=86.63 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-CCCeEEEEecccc-CCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
.+.+|||||||+|.++..++.. .++++|+++..+..+...+.... ..++.+...|... +.-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 3468999999999999988765 48999998765543333222211 2345666677643 222246899999853
Q ss_pred ccc--cCC--ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 176 LIP--WGA--NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~--~~~--~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.. ... ....+++++.++|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 211 111 12689999999999999999863
No 247
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.50 E-value=1.5e-06 Score=82.95 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=70.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcCCH
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNI 434 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~ 434 (506)
.|-|+|||-+.+|..-.. .|..+.+++++-. -..-.+ ..+|.-++|.|++.+-. + .-..++
T Consensus 183 vIaD~GCGEakiA~~~~~-kV~SfDL~a~~~~----------V~~cDm----~~vPl~d~svDvaV~CL--S--LMgtn~ 243 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSERH-KVHSFDLVAVNER----------VIACDM----RNVPLEDESVDVAVFCL--S--LMGTNL 243 (325)
T ss_pred EEEecccchhhhhhcccc-ceeeeeeecCCCc----------eeeccc----cCCcCccCcccEEEeeH--h--hhcccH
Confidence 589999999988752221 2344444443322 111111 23555569999876522 2 224688
Q ss_pred HHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecC
Q 010592 435 EDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 435 ~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.+.+.|.+|||||||.|+|.+-.. .+..+.+-+.+|++++...+..
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 899999999999999999976433 4555777789999997765544
No 248
>PHA03411 putative methyltransferase; Provisional
Probab=98.48 E-value=7.5e-07 Score=87.44 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
..+|||+|||+|.++..++.+ .++++|+++.+ ++.++++...+.+...|+..+.. .++||+|+++..+.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~a-----l~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEF-----ARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHH-----HHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence 348999999999998888653 48888887644 44444443456777778776553 468999999888766
Q ss_pred cCCCh-------------------HHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGAND-------------------GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-------------------~~~l~e~~rvLkPGG~li~~ 203 (506)
..... ..++....++|+|+|.+++.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 43221 24567778899999988775
No 249
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.48 E-value=2.3e-07 Score=91.96 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.....+. ...++ ++.+...|...++...++||.|++.-.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4568999999999999888763 3889999887665444333 33444 355666676666555567999996311
Q ss_pred ------ccc-------cCC--------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 176 ------LIP-------WGA--------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 ------l~~-------~~~--------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.+ +.+ ....+|.++.+.|||||+|+.++...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 100 000 11358999999999999999986543
No 250
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=7.9e-07 Score=94.75 Aligned_cols=121 Identities=13% Similarity=0.206 Sum_probs=77.0
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC-C-CceeEEEEc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-P-RTYDLIHAH 422 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~-p-~s~Dlv~~~ 422 (506)
......+|||+|||+|+.+.+|++.-.-...|+++|.++.|++.+.++ |+ ..+...+.+...+ + .+||+|.++
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D 325 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLD 325 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEc
Confidence 333456899999999998887765311124899999999999877664 33 2223334444433 2 789999963
Q ss_pred ------ccccccc------CcCCH-------HHHHHHHhhhccCCcEEEEEeC-h---hhHHHHHHHHhcC
Q 010592 423 ------GLFSLYK------DKCNI-------EDILLEMDRILRPEGAIIIRDE-V---DEIIKVKKIVGGM 470 (506)
Q Consensus 423 ------~~~~~~~------~~~~~-------~~~l~e~~RvLrPgG~~ii~d~-~---~~~~~~~~~~~~~ 470 (506)
+++..-. ...++ ..+|.++.++|||||++++..- . +-...++.++++-
T Consensus 326 ~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 326 APCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 1221000 00111 2589999999999999999752 2 2345566666643
No 251
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=1.7e-06 Score=91.85 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=80.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC-------CCcee
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-------PRTYD 417 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~-------p~s~D 417 (506)
......+|||+|||+|+.+.+|++.-.....|+++|.++.|++.+.++ |+ ..+...+.+...+ +++||
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCC
Confidence 334456899999999999988876411124799999999999977664 33 2233333443322 37899
Q ss_pred EEEEc------cccccccC------cCC-------HHHHHHHHhhhccCCcEEEEEe-Ch---hhHHHHHHHHhcC-Cce
Q 010592 418 LIHAH------GLFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRD-EV---DEIIKVKKIVGGM-RWD 473 (506)
Q Consensus 418 lv~~~------~~~~~~~~------~~~-------~~~~l~e~~RvLrPgG~~ii~d-~~---~~~~~~~~~~~~~-~w~ 473 (506)
.|.++ +++.+-.. ..+ ...+|.++.++|||||+|+.++ .+ +-...++.++++. .|+
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 99973 23321110 001 2468999999999999998864 22 3456666766654 465
Q ss_pred E
Q 010592 474 T 474 (506)
Q Consensus 474 ~ 474 (506)
.
T Consensus 408 ~ 408 (434)
T PRK14901 408 L 408 (434)
T ss_pred e
Confidence 3
No 252
>PHA03411 putative methyltransferase; Provisional
Probab=98.46 E-value=8.4e-07 Score=87.08 Aligned_cols=120 Identities=10% Similarity=0.031 Sum_probs=85.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--CceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~Dlv~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..++.+. ...+|+++|.++.|++.++++- ..+...+.++..+. ++||+|.++.-|.+...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 3579999999999988886642 1258999999999999998762 12222345555443 78999999888875321
Q ss_pred c-------C----------CHHHHHHHHhhhccCCcEEEEEeC---h----hhHHHHHHHHhcCCceEE
Q 010592 431 K-------C----------NIEDILLEMDRILRPEGAIIIRDE---V----DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 431 ~-------~----------~~~~~l~e~~RvLrPgG~~ii~d~---~----~~~~~~~~~~~~~~w~~~ 475 (506)
. - .+...+....++|+|+|.+++.=. . -.-++.+++++..++...
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 1 1 146788999999999998877411 1 144778888888888743
No 253
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=8.3e-07 Score=93.99 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEEEcC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlV~~~~ 174 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...++. +.+...|...++ +..++||.|++.-
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 4558999999999988887763 4899999987775444 334444554 566777777665 4567899999621
Q ss_pred cc---cccCCC------------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 175 CL---IPWGAN------------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l---~~~~~~------------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. -.+..+ ...+|.++.+.|||||++++++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 11 011111 1456899999999999999987544
No 254
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.46 E-value=7e-07 Score=85.77 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHH-HHcCC----------------CeEEEEeccccCCC
Q 010592 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFA-LERGV----------------PAVIGVLGTIKMPY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a-~~~~~----------------~~~~~~~d~~~lp~ 162 (506)
.+.+||..|||.|.-...|+++| |+++|+|+ .+++.+ .+++. .+.+.++|...++-
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~-----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP-----TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-H-----HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCH-----HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 34589999999999999999996 66666655 444444 22222 24567778877764
Q ss_pred CC-CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010592 163 AS-RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 163 ~~-~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
.. ++||+|+-..+|+-+.++. .++.+.+.++|+|||.+++
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 33 5899999877776665555 7999999999999999444
No 255
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.44 E-value=3.6e-07 Score=91.02 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=77.0
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCC----hhHHHHhhC--------CcEEEecCccchHHHHHHH--
Q 010592 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVA----SWGAYLWSR--------NVIAMSFAPRDSHEAQVQF-- 142 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G----~~~~~L~~~--------~v~~vdis~~di~~~~~~~-- 142 (506)
+.+.|.+....+ +.+.+.+... ...-+|+..||++| +++..|.+. .|+|+||++..+..+..-.
T Consensus 92 neT~FFRd~~~f-~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 92 NLTAFFREAHHF-PILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCCCccCCcHHH-HHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 444454555444 3333333111 22368999999999 344444442 3778888776554443310
Q ss_pred --HH--------Hc----------C---------CCeEEEEeccccCCCC-CCCeeEEEEcCcccccCCCh-HHHHHHHH
Q 010592 143 --AL--------ER----------G---------VPAVIGVLGTIKMPYA-SRAFDMAHCSRCLIPWGAND-GRYMIEVD 191 (506)
Q Consensus 143 --a~--------~~----------~---------~~~~~~~~d~~~lp~~-~~sfDlV~~~~~l~~~~~~~-~~~l~e~~ 191 (506)
.. ++ + ..+.|...|....+++ .+.||+|+|.++++|+.+.. ..++..+.
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV 249 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence 00 00 0 0134445555443443 57899999999999986543 79999999
Q ss_pred HhcCCCeEEEEEc
Q 010592 192 RVLRPGGYWVLSG 204 (506)
Q Consensus 192 rvLkPGG~li~~~ 204 (506)
+.|+|||+|++..
T Consensus 250 ~~L~pgG~L~lG~ 262 (287)
T PRK10611 250 PLLKPDGLLFAGH 262 (287)
T ss_pred HHhCCCcEEEEeC
Confidence 9999999988764
No 256
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.9e-06 Score=85.95 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI 158 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~ 158 (506)
..+.+++.+...+... .. +|||+|||+|..+..++.+ .|+++|+|+.-+ ..+.+.+...++ +..+...|.
T Consensus 95 dTe~Lve~~l~~~~~~--~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al-~~A~~Na~~~~l~~~~~~~~dl- 169 (280)
T COG2890 95 DTELLVEAALALLLQL--DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL-ALARENAERNGLVRVLVVQSDL- 169 (280)
T ss_pred chHHHHHHHHHhhhhc--CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH-HHHHHHHHHcCCccEEEEeeec-
Confidence 3355656554333221 11 7999999999999999876 589999988544 333445555564 223333221
Q ss_pred cCCCCCCCeeEEEEcCcccccC----------CCh--------------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 159 KMPYASRAFDMAHCSRCLIPWG----------AND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~~----------~~~--------------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.-+. .+.||+|+||.-..+-. .+| ..++.++.+.|+|||.+++...
T Consensus 170 f~~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 170 FEPL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1122 34899999987654422 011 1678889999999999999754
No 257
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.43 E-value=1.4e-06 Score=92.82 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc--
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-- 159 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~-- 159 (506)
.+.+++.+.+.+... ++.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...+. ++.+...|+..
T Consensus 282 ~e~l~~~vl~~l~~~--~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQ--PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCC--CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhh
Confidence 466667777777433 3458999999999999999876 48899999877755543 3344444 46777777643
Q ss_pred --CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 160 --MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 --lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++.+++||+|++.... .. ....+..+.+ ++|++.++++..|.
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeEEEEEeChH
Confidence 34556789999986532 22 2345555555 69999999998766
No 258
>PRK00811 spermidine synthase; Provisional
Probab=98.43 E-value=7.4e-07 Score=89.21 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=68.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c--cceecccccc----CCCCCCceeE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L--IGIYHDWCEA----FSTYPRTYDL 418 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~--~~~~~~~~~~----~~~~p~s~Dl 418 (506)
...++|||+|||+|+++..+.+.. .+.+|+.+|+++++++.|.+.- . ...+.-..++ +...+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 346789999999999999988752 2468999999999999998741 1 0011111122 2223479999
Q ss_pred EEEccccccccC-cCCHHHHHHHHhhhccCCcEEEEE
Q 010592 419 IHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 419 v~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.++..-..... ..--..++.++.|+|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998543221110 001256789999999999999995
No 259
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.42 E-value=1.3e-06 Score=84.13 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=78.3
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC---CCCCCCeeEEEEcCc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM---PYASRAFDMAHCSRC 175 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l---p~~~~sfDlV~~~~~ 175 (506)
..+||||||.|.+...+|++ .++|+++...-+ ..+.+.+.+.++ ++.+...|+..+ -+++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999987 589999987555 344556667778 788888887543 245669999999875
Q ss_pred ccccCCCh--------HHHHHHHHHhcCCCeEEEEEcC
Q 010592 176 LIPWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~~--------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+|+... ..+++.+.++|+|||.|.+.+.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 3665433 3799999999999999999864
No 260
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.40 E-value=4.8e-07 Score=88.37 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=75.9
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-CCCCCceeEEEEccc
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-STYPRTYDLIHAHGL 424 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-~~~p~s~Dlv~~~~~ 424 (506)
......+.++|||||+|+|.++.+++++. ..++++-.|.+ .+++.+.+..- +.....+| ..+|. +|++...++
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v~~~~~~~~r---v~~~~gd~f~~~P~-~D~~~l~~v 167 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDLP-EVIEQAKEADR---VEFVPGDFFDPLPV-ADVYLLRHV 167 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE-H-HHHCCHHHTTT---EEEEES-TTTCCSS-ESEEEEESS
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeeccH-hhhhccccccc---cccccccHHhhhcc-ccceeeehh
Confidence 35677788999999999999999997642 23578888985 88888877321 11222333 45667 999999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCC--cEEEEEeCh
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPE--GAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPg--G~~ii~d~~ 457 (506)
++.+.+ .+...+|+.+.+.|+|| |.|+|.|.+
T Consensus 168 Lh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 985552 24568999999999999 999997654
No 261
>PHA03412 putative methyltransferase; Provisional
Probab=98.40 E-value=1.4e-06 Score=83.76 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=64.2
Q ss_pred CCEEEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010592 103 VRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-------~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
+.+|||+|||+|.++..++++ .++++|+++. +.+.|++....+.+...|....++ +++||+|+++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~-----Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT-----YYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH-----HHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 458999999999999887653 4788888654 445555544456777777765554 568999999876
Q ss_pred ccccCC-C----------hHHHHHHHHHhcCCCeEEEE
Q 010592 176 LIPWGA-N----------DGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 176 l~~~~~-~----------~~~~l~e~~rvLkPGG~li~ 202 (506)
+..... + ...++..+.+++++|+. |+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 642211 1 13578888887777775 54
No 262
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=1.1e-06 Score=93.12 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=76.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~Dlv~ 420 (506)
......+|||+|||+|+.+.++++.-.-...|+++|.++.+++.+.++ |+. .+...+.+ ++ ..+++||.|.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEE
Confidence 334456899999999999888876411125899999999999988765 331 12222222 33 1247899999
Q ss_pred Ecc---ccccccCcCCH----------------HHHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhc
Q 010592 421 AHG---LFSLYKDKCNI----------------EDILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG 469 (506)
Q Consensus 421 ~~~---~~~~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~ 469 (506)
++. .+..+..+.++ ..+|.+..+.|||||.++.+. ..+-.+.|+.++..
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 742 22221111111 357999999999999999953 23345556666543
No 263
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=1.2e-06 Score=92.97 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C-CCceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y-PRTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~-p~s~Dlv 419 (506)
......+|||+|||+|+.+..+++... ...|+++|.++.|+..+.++ |+ . ....+.+... + +++||.|
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~-~-~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL-K-ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC-C-eEEEEcCcccchhhcccCCCCEE
Confidence 334456899999999999999987531 15799999999999988665 32 1 1122333322 2 3789999
Q ss_pred EEcccccc---ccCc---------CC-------HHHHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhc
Q 010592 420 HAHGLFSL---YKDK---------CN-------IEDILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG 469 (506)
Q Consensus 420 ~~~~~~~~---~~~~---------~~-------~~~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~ 469 (506)
.++.-.+. ..++ .+ ...+|.+..++|||||.++++. ..+-.+.+..++++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 95432221 1011 11 1368999999999999999865 23344566666554
No 264
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.39 E-value=6.2e-06 Score=82.06 Aligned_cols=103 Identities=11% Similarity=0.107 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc----CCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER----GVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~----~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+++||+||||+|.++..+++. .++++|+++..+..+...+.... ...+.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3459999999999999888765 48889998765544433222211 1234455555432 2222568999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010592 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.... +.... ...+++.+.+.|+|||.+++...
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 6542 22221 25788999999999999998743
No 265
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=2.2e-06 Score=91.31 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CCCceeEEEEc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p~s~Dlv~~~ 422 (506)
.+..+|||+|||+|+++..+++.-.....|+++|.++++++.+.++ |+. .+...+.++.. ++++||+|.++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence 4456899999999999998887421125899999999999887664 331 22233344433 34789999975
Q ss_pred cccc---cccCc---------CCH-------HHHHHHHhhhccCCcEEEEEeC-h---hhHHHHHHHHhcC-CceE
Q 010592 423 GLFS---LYKDK---------CNI-------EDILLEMDRILRPEGAIIIRDE-V---DEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 423 ~~~~---~~~~~---------~~~-------~~~l~e~~RvLrPgG~~ii~d~-~---~~~~~~~~~~~~~-~w~~ 474 (506)
.-.+ ...++ .++ ..+|.++.|+|||||.++.+.- . +....++.++++. .|+.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 3211 11111 111 2589999999999999998532 2 3344566666654 3554
No 266
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=2e-06 Score=81.52 Aligned_cols=102 Identities=20% Similarity=0.379 Sum_probs=65.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCC------------------------
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVP------------------------ 149 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~----~~~~~------------------------ 149 (506)
.+..+|||||-.|.++..+++. .+.++||++.-+..|..+... +....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3458999999999999999886 589999977655444332111 00000
Q ss_pred ------------eEEEEeccccCCCCCCCeeEEEEc----CcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010592 150 ------------AVIGVLGTIKMPYASRAFDMAHCS----RCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 150 ------------~~~~~~d~~~lp~~~~sfDlV~~~----~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
..++.....-+.+....||+|+|. ++...|.++. ..+++.+.+.|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 001111111223445689999984 3323445544 79999999999999999987
No 267
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=6.5e-06 Score=79.20 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=75.3
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCC
Q 010592 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~ 163 (506)
.|...+.+.+ +.+|||.|.|+|.++.+|+.. .++++++-+.....+..++.. -++. +.+...|....-++
T Consensus 85 ~I~~~~gi~p--g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLGISP--GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcCCCC--CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEeccccccccc
Confidence 3455554444 459999999999999999953 488888866444333333322 2322 55556666665555
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. .||+|+.- .++|..++..+..+|||||.+++-.|..
T Consensus 162 ~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 162 E-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred c-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 5 89999863 2567899999999999999999988755
No 268
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.38 E-value=2.5e-06 Score=83.06 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=83.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccCCC----C-CCc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFST----Y-PRT 415 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~~~----~-p~s 415 (506)
...+.++|||+|||+|.-+..|+..-.....|+.+|.+++++++|.+. |+-. ... +..+.++. . +.+
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 334467899999999987666654311135899999999999988764 3311 111 11111221 1 368
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------------hhHHHHHH----HHhcCCceE
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------DEIIKVKK----IVGGMRWDT 474 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------~~~~~~~~----~~~~~~w~~ 474 (506)
||+|+.... .......+.++.+.|||||.+++-+.. .....|++ +...-+|.+
T Consensus 145 fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~ 218 (234)
T PLN02781 145 FDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEI 218 (234)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEE
Confidence 999998221 124467889999999999998873211 01223333 355557777
Q ss_pred EEeecCCCCCCCeEEEEEEec
Q 010592 475 KMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.+....|| +++++|.
T Consensus 219 ~~lp~gdG------~~i~~k~ 233 (234)
T PLN02781 219 SQISIGDG------VTLCRRL 233 (234)
T ss_pred EEEEeCCc------cEEEEEe
Confidence 77766554 5666664
No 269
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=2.1e-06 Score=91.45 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC--CCCCCeeEEEEc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP--YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp--~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...+.. +.+...|...++ ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 3458999999999999888764 3899999886664443 344444543 566667776553 33 689999974
Q ss_pred Cccc------c-----cCCC----------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 174 RCLI------P-----WGAN----------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 174 ~~l~------~-----~~~~----------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.... + |... ...+|.++.++|||||.|+.++..
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3110 0 1011 135799999999999999987643
No 270
>PRK01581 speE spermidine synthase; Validated
Probab=98.37 E-value=1.6e-06 Score=88.24 Aligned_cols=103 Identities=12% Similarity=-0.005 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHH--HH---H--HcCCCeEEEEecccc-CCCCCCCee
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQ--FA---L--ERGVPAVIGVLGTIK-MPYASRAFD 168 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~--~a---~--~~~~~~~~~~~d~~~-lp~~~~sfD 168 (506)
..+.+||+||||+|..++.+++. .++++|+++.++..+... +. . -...++.+.+.|... +.-..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 34569999999999998888875 488888877555333310 00 0 013456667777654 344456899
Q ss_pred EEEEcCcccccCC-----ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 169 MAHCSRCLIPWGA-----NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~-----~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|++... .+... ....+++.+.+.|+|||.|++..
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9998642 11110 01568999999999999998864
No 271
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.36 E-value=4.7e-06 Score=82.87 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccc-----eecccccc----CCCCCCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIG-----IYHDWCEA----FSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~-----~~~~~~~~----~~~~p~s~Dlv 419 (506)
...++||++|||+|+++..+.+.. .+.+++.+|.++++++.+.+.- ..+ .+.-..++ +...+++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345699999999999998887754 2468999999999999887741 100 01000111 11235799999
Q ss_pred EEccccccccCcCC--HHHHHHHHhhhccCCcEEEEE
Q 010592 420 HAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.++....... ... ...++..+.++|+|||.+++.
T Consensus 150 i~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865433111 112 357889999999999999995
No 272
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.35 E-value=3.3e-06 Score=79.30 Aligned_cols=135 Identities=21% Similarity=0.336 Sum_probs=93.2
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH----hcCc----cceecccccc-------CCCCCCceeEE
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGL----IGIYHDWCEA-------FSTYPRTYDLI 419 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~----~rg~----~~~~~~~~~~-------~~~~p~s~Dlv 419 (506)
+||+||||||.-+++++.. ...+.-.|.|.....+.-+. +.|+ .....|.+.+ .+..+++||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999998888774 23367889998877654333 3343 2222222222 12234799999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEE------------------------EeCh---hhHHHHHHHHhcCCc
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII------------------------RDEV---DEIIKVKKIVGGMRW 472 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii------------------------~d~~---~~~~~~~~~~~~~~w 472 (506)
+|.++++... +...+.++.+..++|+|||.|++ +|+. ..++.|.+++.+.++
T Consensus 107 ~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999987554 55568899999999999999999 2221 256789999999998
Q ss_pred eEEEeecCCCCCCCeEEEEEEe
Q 010592 473 DTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~k 494 (506)
+.. +..+-| ....+||.+|
T Consensus 186 ~l~--~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELE--EDIDMP-ANNLLLVFRK 204 (204)
T ss_pred ccC--cccccC-CCCeEEEEeC
Confidence 832 233333 4567888776
No 273
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.35 E-value=7.1e-07 Score=84.18 Aligned_cols=103 Identities=22% Similarity=0.376 Sum_probs=59.7
Q ss_pred CCCEEEEECCCCC----hhHHHHhhC---------CcEEEecCccchHHHHHHH------------HHHc------C---
Q 010592 102 TVRTALDTGCGVA----SWGAYLWSR---------NVIAMSFAPRDSHEAQVQF------------ALER------G--- 147 (506)
Q Consensus 102 ~~~~VLDiGCG~G----~~~~~L~~~---------~v~~vdis~~di~~~~~~~------------a~~~------~--- 147 (506)
..-+|+..||++| +++..|.+. .+.++|+++..+..+..-. ..++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 444445551 3677777665443332100 0000 0
Q ss_pred -------CCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 148 -------VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 -------~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.|...+....+.+.+.||+|+|.++++++.+.. ..+++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 125666667666334567899999999999986544 789999999999999999964
No 274
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.33 E-value=1.9e-06 Score=83.19 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=72.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceec--cccccCCCCC-CceeEEEEc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYH--DWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~--~~~~~~~~~p-~s~Dlv~~~ 422 (506)
...+|||+|||||+|+..|++.| +..|+++|.+++|+........ ..++. .|.+ ++ .+ ..+|++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-~d~~~~Dvsfi- 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-PDFATFDVSFI- 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-CCceeeeEEEe-
Confidence 35589999999999999999976 3689999999888875333211 11111 1222 21 12 47777666
Q ss_pred cccccccCcCCHHHHHHHHhhhccCCcEEEE-------------------EeCh---hhHHHHHHHHhcCCceEE
Q 010592 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIII-------------------RDEV---DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii-------------------~d~~---~~~~~~~~~~~~~~w~~~ 475 (506)
.+..+|..|.+.|+| |.+++ +|.. ..++++...+.+.+|.+.
T Consensus 150 ----------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 150 ----------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ----------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 223378899999999 87776 2322 255677777888999865
No 275
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.32 E-value=2.9e-06 Score=84.16 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=73.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~Dlv~~~~ 423 (506)
....+|||+|||+|+.+..|++.-.....|+++|.++.+++.+.++ |+ ..+...+.+ ++.....||.|.++-
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 3456799999999999988876311123799999999999877664 33 122222233 222236799998743
Q ss_pred ccccc---cCc---------CCH-------HHHHHHHhhhccCCcEEEEEe-Ch---hhHHHHHHHHhc
Q 010592 424 LFSLY---KDK---------CNI-------EDILLEMDRILRPEGAIIIRD-EV---DEIIKVKKIVGG 469 (506)
Q Consensus 424 ~~~~~---~~~---------~~~-------~~~l~e~~RvLrPgG~~ii~d-~~---~~~~~~~~~~~~ 469 (506)
=.+-. ... .++ ..+|.++.+.|||||+|+.+. +. +-...++.+++.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 22211 000 011 259999999999999999863 22 223445555543
No 276
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.32 E-value=1.2e-06 Score=81.67 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=78.9
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---cCccc---eeccccccCCCCCCceeEEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGLIG---IYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---rg~~~---~~~~~~~~~~~~p~s~Dlv~~ 421 (506)
+..+...+|||+||++|+|+..+.+++.....|+++|..+. -....- +|-+. ......+.++.....||+|.|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-ccccceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence 45556789999999999999999998756789999998843 111000 11111 111111112111269999999
Q ss_pred ccccccccCcC-C----H---HHHHHHHhhhccCCcEEEEEe-----ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeE
Q 010592 422 HGLFSLYKDKC-N----I---EDILLEMDRILRPEGAIIIRD-----EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEK 488 (506)
Q Consensus 422 ~~~~~~~~~~~-~----~---~~~l~e~~RvLrPgG~~ii~d-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 488 (506)
+..+....++. + + ...|.=+...|||||.+++.- ....+..++..++..++. .... .++.+.|.
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp~~-sr~~s~E~ 174 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KPPS-SRSESSEE 174 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E-TT-SBTTCBEE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--ECcC-CCCCccEE
Confidence 88666443321 1 1 134444557799999999842 224556666666655444 2211 23345788
Q ss_pred EEEEEe
Q 010592 489 ILVAVK 494 (506)
Q Consensus 489 ~l~~~k 494 (506)
+|+|++
T Consensus 175 Ylv~~~ 180 (181)
T PF01728_consen 175 YLVCRG 180 (181)
T ss_dssp EEESEE
T ss_pred EEEEcC
Confidence 888874
No 277
>PLN02366 spermidine synthase
Probab=98.32 E-value=4.6e-06 Score=84.24 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEeccccC-C-CCCCCeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM-P-YASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~l-p-~~~~sfDlV~ 171 (506)
.+.+||+||||.|..+..+++. +++.+|+++..+..+...+... ....+.+...|.... . .+.+.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3568999999999999999876 4778888775443333222221 123466777775322 1 2356899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... .+.... ...+++.+.+.|+|||.++...
T Consensus 171 ~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 8542 222221 1478999999999999998753
No 278
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.31 E-value=3.5e-06 Score=79.60 Aligned_cols=128 Identities=18% Similarity=0.270 Sum_probs=85.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----Cccc-eeccccccCCCCCCceeEEEEcccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIG-IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~-~~~~~~~~~~~~p~s~Dlv~~~~~~ 425 (506)
....+||.|||.|..+..|.-+- .-.|.-+|..+..++.|.+. .-++ .+..=-++|..-+..||+|.+.-++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46789999999999999887653 24567777888999999843 2122 2211113333223799999998888
Q ss_pred ccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----------h-----hHHHHHHHHhcCCceEEEeecCCC
Q 010592 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------D-----EIIKVKKIVGGMRWDTKMVDHEDG 482 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------~-----~~~~~~~~~~~~~w~~~~~~~~~~ 482 (506)
.|+.+ .++...|......|+|+|.++|.+.. + ..+.++++++++++++...+...|
T Consensus 133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred ccCCH-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 87763 36788999999999999999995432 1 568899999999999877665544
No 279
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.31 E-value=2.6e-06 Score=77.38 Aligned_cols=119 Identities=11% Similarity=0.153 Sum_probs=81.4
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH----hcCccceeccccccCC---CCCCceeEEEEcccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGLIGIYHDWCEAFS---TYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~----~rg~~~~~~~~~~~~~---~~p~s~Dlv~~~~~~~~ 427 (506)
+|||+|||-|.+...|++.+.. ..++++|-|+..+..|. .+|+...+..-..++- +.+..||+|+=-+.+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 8999999999999999998743 45999999999887543 3454321211112221 24478888886554442
Q ss_pred ---ccC--cCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceE
Q 010592 428 ---YKD--KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 428 ---~~~--~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~ 474 (506)
... ...+...+--+.++|+|||.|+|+--+=..++|.+.+..-++..
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEE
Confidence 111 11234577888999999999999877766777888777777663
No 280
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.31 E-value=4.7e-06 Score=84.77 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=77.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp~ 162 (506)
+.+.+.+.+++... .+.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...++ ++.+...|+..+..
T Consensus 159 ~~l~~~v~~~l~~~--~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 159 AQLYATARDWVREL--PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHH
Confidence 45555555665322 2458999999999999999987 4889999987765443 44444555 36788888765432
Q ss_pred -CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCC
Q 010592 163 -ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 163 -~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~ 208 (506)
..++||+|++.... . .....+.++...++|++.++++..+..
T Consensus 236 ~~~~~~D~Vv~dPPr---~-G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 236 AQGEVPDLVLVNPPR---R-GIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred hcCCCCeEEEECCCC---C-CccHHHHHHHHHcCCCeEEEEECCccc
Confidence 34579999987431 1 112233344455789999999987763
No 281
>PRK03612 spermidine synthase; Provisional
Probab=98.30 E-value=2.8e-06 Score=92.21 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=81.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-cc---------ceecccccc----CCCCCCcee
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI---------GIYHDWCEA----FSTYPRTYD 417 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~---------~~~~~~~~~----~~~~p~s~D 417 (506)
+.++|||+|||+|..+..+.+.+ .+.+|+.+|.+++|++.+++.- +. ..++-.+++ +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999998888753 2368999999999999998731 10 111111222 122458999
Q ss_pred EEEEccccccccC--cCCHHHHHHHHhhhccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEE
Q 010592 418 LIHAHGLFSLYKD--KCNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 418 lv~~~~~~~~~~~--~~~~~~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~ 475 (506)
+|.++........ +---+.++.++.|.|||||.+++... .+....+.+.+++.++.+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9999643221110 11113588999999999999999532 3344566667777777443
No 282
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.30 E-value=7.6e-07 Score=84.88 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=65.6
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-- 413 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-- 413 (506)
+.+++..+...+..+|||||||+|.+++.|+.-...+..|+.+|..+..++.|.++ |+ ..+...+.+. ..++
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccC
Confidence 34455555555667899999999999998876322235789999998888888776 22 1222222222 2233
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
..||.|+++.... .++ .++.+-|||||++++-
T Consensus 140 apfD~I~v~~a~~------~ip---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTAAVP------EIP---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp -SEEEEEESSBBS------S-----HHHHHTEEEEEEEEEE
T ss_pred CCcCEEEEeeccc------hHH---HHHHHhcCCCcEEEEE
Confidence 7899999965554 222 4455679999999984
No 283
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.29 E-value=1.1e-05 Score=74.31 Aligned_cols=104 Identities=18% Similarity=0.074 Sum_probs=70.3
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccc-cCCCCCC
Q 010592 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KMPYASR 165 (506)
Q Consensus 92 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~-~lp~~~~ 165 (506)
....|.. .++..++|||||+|+.+..++.. .++++|-++..+.... +++..-+.+ +....+++- .|+-.+
T Consensus 26 ~ls~L~~--~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~- 101 (187)
T COG2242 26 TLSKLRP--RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP- 101 (187)
T ss_pred HHHhhCC--CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-
Confidence 4455533 34559999999999999998832 5888888765443322 333344454 444444542 333222
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||.|+.... .....+|+.+...|||||.++...
T Consensus 102 ~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 102 SPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 7999999775 234789999999999999999974
No 284
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.29 E-value=1.5e-06 Score=88.44 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=70.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cc----eeccc-cccCCC-----C
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IG----IYHDW-CEAFST-----Y 412 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~----~~~~~-~~~~~~-----~ 412 (506)
...+|||||||-||-..-....+ +..++++|++...|+.|.+|-- .. ..... +..+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56789999999999766666654 4689999999999999999860 00 01111 111211 2
Q ss_pred C---CceeEEEEccccccccCc-CCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 413 P---RTYDLIHAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 413 p---~s~Dlv~~~~~~~~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+ ..||+|-|..+|++.-.- ......|..+...|||||+||.+-..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2 599999999999865533 24567999999999999999998654
No 285
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.28 E-value=8.6e-06 Score=77.09 Aligned_cols=121 Identities=8% Similarity=-0.007 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecc
Q 010592 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGT 157 (506)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~ 157 (506)
....+...+.+.+.+... ..+.+|||+|||+|.++..++.+ .++++|+++..+..+. +.+...+. ++.+...|.
T Consensus 34 Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~-~Nl~~~~~~~v~~~~~D~ 111 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI-KNLATLKAGNARVVNTNA 111 (199)
T ss_pred CcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEEchH
Confidence 344566656666655311 23458999999999999865443 5888999875443332 33333343 356666665
Q ss_pred cc-CCCCCCCeeEEEEcCcccccCCChHHHHHHHHH--hcCCCeEEEEEcCC
Q 010592 158 IK-MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDR--VLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~-lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~r--vLkPGG~li~~~p~ 206 (506)
.. ++...++||+|++..-+.. .-...++..+.. +|+|+|.++++.+.
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 43 3323457999999875311 112455555554 37999999998654
No 286
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.27 E-value=3.1e-06 Score=79.85 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=74.4
Q ss_pred hhhhhhhhhHHHHHHHH-HHhhhcCCCCCceEEeecCcccH----HHHHHHh----CCCeEEEEeecCCCcccHHHHHhc
Q 010592 326 SYQEDSNKWKKHVNAYK-KINRLLDSGRYRNIMDMNAGFGG----FAAAIQS----SKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 326 ~f~~d~~~W~~~v~~y~-~~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~----~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.|-.|...|+....... .++.....++.-+|..+||+||. +|..|.+ ...|...+.++|+++.+|+.|.+
T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~- 82 (196)
T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA- 82 (196)
T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-
T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-
Confidence 46666777776555533 23322333445689999999997 3444444 23446899999999999998864
Q ss_pred Cccc------------------------------------eeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHH
Q 010592 397 GLIG------------------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLE 440 (506)
Q Consensus 397 g~~~------------------------------------~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e 440 (506)
|..+ ..|++.+ .+...+.||+|.|-+||-+.. ...-..++..
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHH
Confidence 3200 1122222 111238999999999988554 3345789999
Q ss_pred HhhhccCCcEEEEEeCh
Q 010592 441 MDRILRPEGAIIIRDEV 457 (506)
Q Consensus 441 ~~RvLrPgG~~ii~d~~ 457 (506)
+++.|+|||+|++-...
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999996543
No 287
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.25 E-value=1.6e-06 Score=83.34 Aligned_cols=122 Identities=9% Similarity=0.048 Sum_probs=87.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Cc--------------cceeccccccCCCCC----
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GL--------------IGIYHDWCEAFSTYP---- 413 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~--------------~~~~~~~~~~~~~~p---- 413 (506)
..+||+.|||.|.-+..|++.| ..|+++|+|+..++.++++ ++ -..+..+|.+|=.++
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4589999999999999999988 5799999999999987663 11 113344566665553
Q ss_pred --CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE----eCh----h---hHHHHHHHHhcCCceEEEeec
Q 010592 414 --RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR----DEV----D---EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 --~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~----d~~----~---~~~~~~~~~~~~~w~~~~~~~ 479 (506)
+.||+|+=..+|.++. ...=......|.++|+|||.+++- +.. + ..++|++++. -.|++..+..
T Consensus 121 ~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~-~~~~i~~l~~ 197 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFS-AKIKFELIDS 197 (226)
T ss_pred ccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhcc-CCceEEEeee
Confidence 4799999878887664 222357999999999999988872 111 1 4567777764 4566555443
No 288
>PLN02366 spermidine synthase
Probab=98.25 E-value=1.1e-05 Score=81.47 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=69.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-c------ceecccccc----CCCC-CCceeE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-I------GIYHDWCEA----FSTY-PRTYDL 418 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~------~~~~~~~~~----~~~~-p~s~Dl 418 (506)
...++||+||||.|+.+..+++.+ .+.+|+.+|+++++++.+++.-. . ..+.-.+++ +... ++.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 346789999999999999998763 35688899999899999877521 0 011112233 2223 378999
Q ss_pred EEEccccccccCcCC--HHHHHHHHhhhccCCcEEEE
Q 010592 419 IHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 419 v~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii 453 (506)
|.++....... ... -..++..+.+.|+|||.+++
T Consensus 169 Ii~D~~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 169 IIVDSSDPVGP-AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEcCCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99854332111 111 24689999999999999987
No 289
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.25 E-value=4.1e-06 Score=80.47 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=88.0
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Cccc--------------eeccccccCCCCC-
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIG--------------IYHDWCEAFSTYP- 413 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~~--------------~~~~~~~~~~~~p- 413 (506)
.....+||+.|||.|.-+..|+++| .+|+++|+|+..++.++++ ++.. .+..+|.+|=.++
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3445689999999999999999997 6999999999999988554 4311 1233456664443
Q ss_pred ---CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE-E-e-----C--hh---hHHHHHHHHhcCCceEEEee
Q 010592 414 ---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII-R-D-----E--VD---EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 ---~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii-~-d-----~--~~---~~~~~~~~~~~~~w~~~~~~ 478 (506)
+.||+|+=..+|..+. ...=+....-|.++|||||.+++ + + . .+ ..++|++++. -+|++....
T Consensus 112 ~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred hhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 5799999776776543 44446899999999999999433 1 1 1 11 5688888888 888877554
Q ss_pred c
Q 010592 479 H 479 (506)
Q Consensus 479 ~ 479 (506)
.
T Consensus 190 ~ 190 (218)
T PF05724_consen 190 E 190 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 290
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.21 E-value=1e-05 Score=78.68 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
...++..+.+.. ..++|||+|||+|+-+..++.. .++++|+++.....+. +...+.++. +.+..+++
T Consensus 56 ~g~~L~~l~~~~-----~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 56 EGLFLSMLVKIM-----NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred HHHHHHHHHHHh-----CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccH
Confidence 344555555544 2458999999999877766543 4899999885554333 333344443 55666665
Q ss_pred ccC-C-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 158 IKM-P-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 158 ~~l-p-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
... + .+.++||+|++..- .+....++.++.+.|||||.+++.
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 332 2 12468999998531 122367899999999999998875
No 291
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.21 E-value=1.5e-05 Score=76.86 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=62.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeE-EEEecccc-----C
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIK-----M 160 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~-~~~~d~~~-----l 160 (506)
..+.+.++. ...+.+|||+|||+|.|+..++++ .++++|+++.++..... ....+. +...++.. .
T Consensus 64 ~~~l~~~~~-~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~-----~~~~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 64 KEALEEFNI-DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR-----QDERVKVLERTNIRYVTPADI 137 (228)
T ss_pred HHHHHhcCC-CCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh-----cCCCeeEeecCCcccCCHhHc
Confidence 444444432 234568999999999999999987 38899998765544222 222211 22223332 2
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+..-..||+++++.++ .+..+.+.|+| |.+++-.
T Consensus 138 ~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 138 FPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 2222468877776543 47889999999 8777655
No 292
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.20 E-value=9.5e-06 Score=86.49 Aligned_cols=119 Identities=13% Similarity=0.218 Sum_probs=79.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC----C--C-CCce
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS----T--Y-PRTY 416 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~----~--~-p~s~ 416 (506)
+...+..+|||+|||+|.++..|++.. ..|+++|.++.|++.|.+. |+ ..+...+.++. . + +++|
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCC
Confidence 333344689999999999999998864 5899999999999988764 22 22333334332 1 2 3689
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
|+|.++- ++..+...+..+.+ |+|++.++|+-... ....+..+. ..+|++..+.
T Consensus 369 D~Vi~dP------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~-~~gY~l~~i~ 423 (443)
T PRK13168 369 DKVLLDP------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV-EAGYRLKRAG 423 (443)
T ss_pred CEEEECc------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh-hCCcEEEEEE
Confidence 9998821 23345566766655 69999999985543 444555443 4578876443
No 293
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.20 E-value=8.9e-06 Score=86.42 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc--
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-- 159 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~-- 159 (506)
.+.+.+.+.+.+... ++.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...+. ++.+...|...
T Consensus 277 ~~~l~~~~~~~l~~~--~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 277 NEKLVDRALEALELQ--GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHhccC--CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHH
Confidence 355556666666432 3358999999999999999875 58999998877654443 3333444 46677777643
Q ss_pred --CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 160 --MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 --lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++.+++||+|+....- ..-...+++.+.+ |+|++.++++..|.
T Consensus 354 ~~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc~p~ 399 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-LKPERIVYVSCNPA 399 (431)
T ss_pred HHHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-cCCCEEEEEcCCHH
Confidence 23445689999975432 1112566666554 89999888886544
No 294
>PHA03412 putative methyltransferase; Provisional
Probab=98.19 E-value=4.6e-06 Score=80.16 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=66.8
Q ss_pred CceEEeecCcccHHHHHHHhCC--CeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~--~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~ 428 (506)
..+|||+|||+|.++..++..- ....+|+++|+++.++..|.+... ..+..+.++-.+ +.+||+|.++-=|.-.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhcccccCCccEEEECCCCCCc
Confidence 3479999999999999887531 013589999999999999986531 223334555433 3799999997655522
Q ss_pred c-----Cc---CC-HHHHHHHHhhhccCCcEEEE
Q 010592 429 K-----DK---CN-IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 429 ~-----~~---~~-~~~~l~e~~RvLrPgG~~ii 453 (506)
. .+ .. ...++....|+|+||+. |+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 11 12 23588888897777775 66
No 295
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.18 E-value=4.3e-06 Score=77.11 Aligned_cols=103 Identities=8% Similarity=0.026 Sum_probs=66.4
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC---CceeEEEE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP---RTYDLIHA 421 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p---~s~Dlv~~ 421 (506)
..+......+|||+|||+|.++..|++++ ..|+++|.++.|++.+.++.. ...+.-...++..++ ..||.|.+
T Consensus 7 ~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~ 83 (169)
T smart00650 7 RAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVG 83 (169)
T ss_pred HhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEE
Confidence 33444455689999999999999999874 589999999999999887631 111222234444433 46999998
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.-++.. ...+..++.+. .+.++|.+++..
T Consensus 84 n~Py~~~--~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 84 NLPYNIS--TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred CCCcccH--HHHHHHHHhcC--CCcceEEEEEEH
Confidence 6544311 11223333322 256899998854
No 296
>PLN02672 methionine S-methyltransferase
Probab=98.18 E-value=2.8e-05 Score=89.61 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=69.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC-----------------CCeEEEEeccccCC
Q 010592 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG-----------------VPAVIGVLGTIKMP 161 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~-----------------~~~~~~~~d~~~lp 161 (506)
+.+|||+|||+|.++..|+.+ .++++|+++..+..+..+... ++ .++.+...|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhhc
Confidence 458999999999999999875 489999999776555544433 21 13566666764322
Q ss_pred CC-CCCeeEEEEcCcccccC---------------------------------CCh----HHHHHHHHHhcCCCeEEEEE
Q 010592 162 YA-SRAFDMAHCSRCLIPWG---------------------------------AND----GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 162 ~~-~~sfDlV~~~~~l~~~~---------------------------------~~~----~~~l~e~~rvLkPGG~li~~ 203 (506)
-. ...||+|+|+-..+.-. .+. ..++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 23699999975543110 111 36778888999999999998
Q ss_pred cC
Q 010592 204 GP 205 (506)
Q Consensus 204 ~p 205 (506)
..
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 54
No 297
>PRK03612 spermidine synthase; Provisional
Probab=98.17 E-value=1.4e-05 Score=86.75 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHH--HHH-H----cCCCeEEEEecccc-CCCCCCCeeE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQ--FAL-E----RGVPAVIGVLGTIK-MPYASRAFDM 169 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~--~a~-~----~~~~~~~~~~d~~~-lp~~~~sfDl 169 (506)
++++|||||||+|..+..++++ .++++|+++.++..+... +.. . ...++.+...|... +...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4568999999999999988765 478888877655433321 110 0 12345666677654 2333568999
Q ss_pred EEEcCcccccCCCh-----HHHHHHHHHhcCCCeEEEEEcC
Q 010592 170 AHCSRCLIPWGAND-----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~-----~~~l~e~~rvLkPGG~li~~~p 205 (506)
|++.... +..+.. ..+++.+.+.|||||.+++...
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9997532 222111 3688999999999999998753
No 298
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.14 E-value=9.2e-06 Score=82.65 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=78.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC----CCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY----PRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~----p~s~Dlv~~~~~ 424 (506)
..+|||+|||+|.++..|+.++ ..|+++|.++.|++.|.+. |+ ..++..+.++..+ +..||+|.++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 3679999999999999999865 5899999999999988654 33 2333444444332 2579999984
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
.++..+...+.++..-++|++.++++.... ..+.++.+ -+|++....
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEE
Confidence 234444445555556689999999976554 34455554 478866443
No 299
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.14 E-value=9.4e-06 Score=91.17 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=71.3
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccC-CCCCCCeeEEEEcCc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM-PYASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~l-p~~~~sfDlV~~~~~ 175 (506)
+.+|||+|||+|.++..++.. .|+++|+|+..+..+..+.. .+++ .+.+...|..+. .-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 458999999999999999876 38899999877755554443 3444 366777776432 111468999999643
Q ss_pred ccccC----------CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 176 LIPWG----------ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~----------~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...-. .+...++..+.++|+|||.++++...
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 21100 11246788889999999999987643
No 300
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.13 E-value=1.3e-05 Score=85.25 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=80.7
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCC---C
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STY---P 413 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~---p 413 (506)
...+...+..+|||+|||+|.++..|++.. ..|+++|.++.|++.|.+. |+ ..++..+.++ +.+ +
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcC
Confidence 333333444689999999999999998864 4799999999999988764 22 2222223332 222 2
Q ss_pred CceeEEEEccccccccCcCC-HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEee
Q 010592 414 RTYDLIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~-~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
++||+|..+- ++.. ...++.++.+ |+|+|.++++........--..+...+|++..+.
T Consensus 361 ~~~D~vi~dP------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 361 QIPDVLLLDP------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred CCCCEEEECc------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEEE
Confidence 5799998711 1223 3566666655 8999999998766555444444556678866543
No 301
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.12 E-value=1.1e-05 Score=74.80 Aligned_cols=120 Identities=17% Similarity=0.071 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHhhC----CCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC----CCe
Q 010592 83 QGADKYIDQLASVI----PIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG----VPA 150 (506)
Q Consensus 83 ~~~~~~~~~l~~~l----~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~----~~~ 150 (506)
+++..+.+.+.+.. ......+.+|||+|||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccc
Confidence 44444444454432 112234569999999999777777665 588899876 3333434444332 233
Q ss_pred EEEEecccc-C---CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 151 VIGVLGTIK-M---PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 151 ~~~~~d~~~-l---p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+...+-.. . ....++||+|+++.++.. ....+.++.-+.++|+|+|.++++.+
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCcEEEecCcccccccccccCCEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 444433211 1 123468999999999843 44448899999999999999777643
No 302
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.11 E-value=1.1e-05 Score=84.38 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=67.6
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccCC----CCCCCeeEEEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKMP----YASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~lp----~~~~sfDlV~~ 172 (506)
+.+|||+|||+|.++..++.. .++++|+++..+..+. +.+..+++ .+.+..+|+.... ...++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999998775544 4899999987665544 33444444 3567777765431 13568999999
Q ss_pred cCcccccCCC----------hHHHHHHHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGAN----------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~----------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..... ... -..++..+.++|+|||.|++.+
T Consensus 300 DPP~f--~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKF--VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCC--CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 75431 121 1244556789999999999865
No 303
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.10 E-value=1.1e-05 Score=76.30 Aligned_cols=140 Identities=24% Similarity=0.264 Sum_probs=92.3
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCcc----c-eeccccccCCCCC-Cce
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLI----G-IYHDWCEAFSTYP-RTY 416 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~----~-~~~~~~~~~~~~p-~s~ 416 (506)
.++.....+|||.+.|.|.+|..-.++|. ..|..++..++.|+.|.- |++. . +.-|..+-+..++ .||
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 45555677899999999999999888874 356666777788876643 2331 1 1122234455677 789
Q ss_pred eEE-EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe--------ChhhHHHHHHHHhcCCceEEEeecCCCCCCCe
Q 010592 417 DLI-HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD--------EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE 487 (506)
Q Consensus 417 Dlv-~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 487 (506)
|+| |=--=||+.. .---+.+-.|++|||||||.++=-- -.+....+.+.+.+.++.+.....+.
T Consensus 207 DaIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~------ 279 (287)
T COG2521 207 DAIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREA------ 279 (287)
T ss_pred ceEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhc------
Confidence 965 4433444333 1122578999999999999887621 22366788888999999965544442
Q ss_pred EEEEEEec
Q 010592 488 KILVAVKQ 495 (506)
Q Consensus 488 ~~l~~~k~ 495 (506)
.-++|+|+
T Consensus 280 ~gv~A~k~ 287 (287)
T COG2521 280 LGVVAVKP 287 (287)
T ss_pred cceEEecC
Confidence 23677764
No 304
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=2.6e-05 Score=75.36 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhhCCCC-CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEe---
Q 010592 84 GADKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL--- 155 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~--- 155 (506)
..+.+++.+.+.+... ...+..+||+|||+|..+..++.. .++++|.|+..+.-+. ++++...+...+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~ 207 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNI 207 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecc
Confidence 3477777777776422 123347999999999988888764 4788887764442222 233332333222222
Q ss_pred -cc---ccCCCCCCCeeEEEEcCcccccCCChH--------------------------HHHHHHHHhcCCCeEEEEEcC
Q 010592 156 -GT---IKMPYASRAFDMAHCSRCLIPWGANDG--------------------------RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 156 -d~---~~lp~~~~sfDlV~~~~~l~~~~~~~~--------------------------~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ...+...+.+|+++|+.-.+. .+|.. .++.-+.|.|+|||.+.+...
T Consensus 208 me~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11 233456789999999875532 11111 456778899999999999854
No 305
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.09 E-value=1.9e-05 Score=82.50 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=78.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccCCC----C---CCceeEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~~~----~---p~s~Dlv~ 420 (506)
..+|||+|||+|+|+.+.+..+ ...|+++|.++.+++.|.+. |+. ..+...+.++-. + .++||+|.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4679999999999987765544 24899999999999988764 331 122223333221 1 35899999
Q ss_pred EccccccccCc-------CCHHHHHHHHhhhccCCcEEEEEeC---h---hhHHHHHHHHhcCCceEEEee
Q 010592 421 AHGLFSLYKDK-------CNIEDILLEMDRILRPEGAIIIRDE---V---DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~~~~~~~~~-------~~~~~~l~e~~RvLrPgG~~ii~d~---~---~~~~~~~~~~~~~~w~~~~~~ 478 (506)
++-=.- ...+ .....++....++|+|||.|+...- + ...+.+.+-+...+-++.++.
T Consensus 299 lDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 299 MDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred ECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 952221 0111 1234556667899999999998432 2 244555555677777766654
No 306
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.09 E-value=1.4e-05 Score=80.26 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=68.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEE--EEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~--~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.+++|||||||+|.++...++. .|.++|.|. +..-+.+.+..++....+ ..+.++.+.+|-...|+|++-+.-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4569999999999988888876 478888864 445556677777766433 344455555556789999996654
Q ss_pred cccC--CChHHHHHHHHHhcCCCeEEEE
Q 010592 177 IPWG--ANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~--~~~~~~l~e~~rvLkPGG~li~ 202 (506)
..+. .-....|-.-.+.|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2211 1124566667899999998764
No 307
>PLN02476 O-methyltransferase
Probab=98.08 E-value=2.5e-05 Score=77.34 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=86.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc----cccCCCC-----CC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW----CEAFSTY-----PR 414 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~----~~~~~~~-----p~ 414 (506)
+...+.++||++|+|+|..+.+|+..-.....|+.+|.+++++++|.+- |+-..+.-. .+-++.+ ++
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 3444577999999999999998876311124699999999998887553 442111111 1112222 36
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh------------h----hHHHHHHHHhcCCceEEEee
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------D----EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~----~~~~~~~~~~~~~w~~~~~~ 478 (506)
+||+|+... +.......+....+.|||||.+++-+.+ . ..+-.+.+...=++++.+..
T Consensus 194 ~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP 267 (278)
T PLN02476 194 SYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP 267 (278)
T ss_pred CCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE
Confidence 899999822 1224567889999999999999983221 0 12222334667788888876
Q ss_pred cCCCCCCCeEEEEEEec
Q 010592 479 HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 479 ~~~~~~~~~~~l~~~k~ 495 (506)
..|| +++++|+
T Consensus 268 igDG------l~i~~K~ 278 (278)
T PLN02476 268 IGDG------MTICRKR 278 (278)
T ss_pred eCCe------eEEEEEC
Confidence 6654 5666663
No 308
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.06 E-value=3.6e-05 Score=80.14 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=74.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC-
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP- 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~lp- 161 (506)
+.+.+.+.+++... .+.+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+. ++.+...|.....
T Consensus 219 ~~l~~~~~~~l~~~--~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~ 295 (374)
T TIGR02085 219 AQLYATARQWVREI--PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFAT 295 (374)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHH
Confidence 44445555554211 2358999999999999999876 4889999886664333 44444454 4677777765432
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
-..++||+|++.... ..-...++..+. .++|++.++++..|.
T Consensus 296 ~~~~~~D~vi~DPPr---~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 296 AQMSAPELVLVNPPR---RGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred hcCCCCCEEEECCCC---CCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 122469999987543 221245555554 479999999997655
No 309
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.05 E-value=8e-05 Score=71.10 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEE-ec
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGV-LG 156 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~-~d 156 (506)
.-.++..+++.. ..++|||||.+.|+-+.+|+.. .++++|+++.....+...++ +.|+. +.... +|
T Consensus 47 ~g~~L~~L~~~~-----~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLARLS-----GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGD 120 (219)
T ss_pred HHHHHHHHHHhc-----CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCc
Confidence 344545555444 3458999999999999998864 38999998866654444443 33443 33333 24
Q ss_pred cc-cCC-CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 157 TI-KMP-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 157 ~~-~lp-~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.. .+. ...++||+|+.- +...+-..++..+.++|+|||.+++.
T Consensus 121 al~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 32 222 457899999974 23334478999999999999999985
No 310
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.05 E-value=1.5e-05 Score=76.81 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=75.0
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccceecccccc----CCCC-C-CceeEEEEcc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWCEA----FSTY-P-RTYDLIHAHG 423 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~~~~~~~~~----~~~~-p-~s~Dlv~~~~ 423 (506)
..+|+||||.|.|...|+.+.- ..|+++++....-+..|.+ .++. ++.-.|.+ ++.+ + +|.|-|+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i-- 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYI-- 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEE--
Confidence 3699999999999999998642 3588999888776665544 4541 22222332 2333 3 59999887
Q ss_pred ccc-------cccCcCCHHHHHHHHhhhccCCcEEEEE-eChhhHHH-HHHHHhc
Q 010592 424 LFS-------LYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIK-VKKIVGG 469 (506)
Q Consensus 424 ~~~-------~~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~-~~~~~~~ 469 (506)
.|+ |.+.|---+..|.++.|+|+|||.|.+. |..++.+. +......
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 233 2333333357999999999999999995 55556666 5555444
No 311
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=5e-06 Score=78.11 Aligned_cols=123 Identities=12% Similarity=0.216 Sum_probs=90.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceeccccc-cCCCCCCceeEEEEccccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCE-AFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~~-~~~~~p~s~Dlv~~~~~~~~~ 428 (506)
.-.++|+|||.|..+.+|...+ +..++-+|.|..|++.++.-. +...+..--| -+++-+++||||.++..+++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 4469999999999999999987 478899999999999887763 3222222223 344344999999995555422
Q ss_pred cCcCCHHHHHHHHhhhccCCcEEEEE----eCh-------------------------hhHHHHHHHHhcCCceEEEeec
Q 010592 429 KDKCNIEDILLEMDRILRPEGAIIIR----DEV-------------------------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~----d~~-------------------------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.+++..|...+-+|||.|.||-+ |++ ..+..+-.++.+++++...+|+
T Consensus 151 ---NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 151 ---NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred ---ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence 36788999999999999999872 221 1445667789999999776665
Q ss_pred C
Q 010592 480 E 480 (506)
Q Consensus 480 ~ 480 (506)
+
T Consensus 228 D 228 (325)
T KOG2940|consen 228 D 228 (325)
T ss_pred c
Confidence 4
No 312
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.97 E-value=2.7e-05 Score=76.73 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=65.9
Q ss_pred CCCEEEEECCCCC----hhHHHHhhC---------CcEEEecCccchHHHHHH----HHHHcCCC---------------
Q 010592 102 TVRTALDTGCGVA----SWGAYLWSR---------NVIAMSFAPRDSHEAQVQ----FALERGVP--------------- 149 (506)
Q Consensus 102 ~~~~VLDiGCG~G----~~~~~L~~~---------~v~~vdis~~di~~~~~~----~a~~~~~~--------------- 149 (506)
..-+|+-+||++| +++..|.+. .|.|+||+...+.+|..- ....++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 344444332 367777766544443321 00101111
Q ss_pred ----------eEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 150 ----------AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 ----------~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.|...+...-++..+.||+|+|-++++++.... ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2333333333332456799999999999986544 789999999999999999953
No 313
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.96 E-value=3.5e-05 Score=77.70 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=73.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC-eE-EEEeccccCCCCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-AV-IGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~-~~-~~~~d~~~lp~~~~ 165 (506)
..+.++.... .|..|||-=||||+++....-.| +++.|++..|+..+..++-.- +++ .. ....|+..+|++++
T Consensus 187 R~mVNLa~v~--~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y-~i~~~~~~~~~Da~~lpl~~~ 263 (347)
T COG1041 187 RAMVNLARVK--RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYY-GIEDYPVLKVLDATNLPLRDN 263 (347)
T ss_pred HHHHHHhccc--cCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhh-CcCceeEEEecccccCCCCCC
Confidence 3344444333 34589999999999988876665 555555544443333332221 222 32 33448999999999
Q ss_pred CeeEEEEcCccc-----ccC--CCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 166 AFDMAHCSRCLI-----PWG--AND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~-----~~~--~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||.|++-.-.= .-. ++. ..+|+.+.++||+||++++..|
T Consensus 264 ~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999843210 100 111 5789999999999999999987
No 314
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.96 E-value=3.4e-05 Score=69.35 Aligned_cols=110 Identities=18% Similarity=0.116 Sum_probs=77.7
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC-----cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP- 161 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~-----v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp- 161 (506)
..+.+++.+ ...++.-|||+|.|+|-++..++.++ +++++.++ .....-.+......+..+|+..+.
T Consensus 36 lA~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~-----dF~~~L~~~~p~~~ii~gda~~l~~ 108 (194)
T COG3963 36 LARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP-----DFVCHLNQLYPGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH-----HHHHHHHHhCCCccccccchhhHHH
Confidence 334566666 34456689999999999999999985 56666655 333344444445556666765543
Q ss_pred ----CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 162 ----YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ----~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+..||.|+|..-+..++.+. -++|+++...|.+||.++.-.
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5677899999976665554444 588999999999999998754
No 315
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.96 E-value=5.7e-05 Score=65.86 Aligned_cols=99 Identities=27% Similarity=0.383 Sum_probs=65.3
Q ss_pred EEEECCCCChh--HHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecccc--CCCCC-CCeeEEEEcCccc
Q 010592 106 ALDTGCGVASW--GAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK--MPYAS-RAFDMAHCSRCLI 177 (506)
Q Consensus 106 VLDiGCG~G~~--~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~--lp~~~-~sfDlV~~~~~l~ 177 (506)
+||+|||+|.. ...+... .++++|+++.++......... .... ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444332 356677776555441111111 2222 3556666654 78877 589999 655555
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5444 6889999999999999999976443
No 316
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.95 E-value=1.5e-05 Score=80.04 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=66.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc---cceeccccccCCCCC-CceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHDWCEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~---~~~~~~~~~~~~~~p-~s~Dlv~~~~~ 424 (506)
.++|||+|||||-++..-++.| ..+|.++|.| ++.+.|.+ -++ +..+....|++ .+| ..+|+|.+-..
T Consensus 61 dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC--cceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 5679999999999887777766 4789999998 77775544 343 44444455666 567 99999998211
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
=..+....-+..+|..=++.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1111112234568888899999999765
No 317
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.95 E-value=6.5e-05 Score=76.12 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhhCCC------CCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--e
Q 010592 83 QGADKYIDQLASVIPI------KNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--A 150 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~------~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~ 150 (506)
.+.-.|+..+.+++.. ..+...+|||||||+|.....|+.+ .++++|+++..+..++...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 3446677777777632 1234568999999999877777654 48999998876655554444331343 3
Q ss_pred EEEE-eccccC----CCCCCCeeEEEEcCcccc
Q 010592 151 VIGV-LGTIKM----PYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 151 ~~~~-~d~~~l----p~~~~sfDlV~~~~~l~~ 178 (506)
.+.. .+...+ ..+.+.||+|+|+--++.
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 3322 222221 124678999999987643
No 318
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.94 E-value=9.5e-06 Score=76.61 Aligned_cols=120 Identities=21% Similarity=0.205 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcC---CCeEEEEecc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERG---VPAVIGVLGT 157 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~---~~~~~~~~d~ 157 (506)
+.+.+.+.+.+.-......+.+|||...|-|+.+...+++| |.+++.+|..+.-+.++-- .++ ..+.+..+|+
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPw-Sr~l~~~~i~iilGD~ 194 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPW-SRELFEIAIKIILGDA 194 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCC-CccccccccEEecccH
Confidence 34566666665554445567799999999999999999885 5677777755433222100 011 1245566676
Q ss_pred ccC--CCCCCCeeEEEEcCcccccCCC--hHHHHHHHHHhcCCCeEEEEEc
Q 010592 158 IKM--PYASRAFDMAHCSRCLIPWGAN--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~l--p~~~~sfDlV~~~~~l~~~~~~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++ .|++.|||+|+--..-...... ...+..|++|+|||||.++-.+
T Consensus 195 ~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 195 YEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred HHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 544 4789999999853221111111 1689999999999999998754
No 319
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=7e-05 Score=72.17 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=82.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHA 421 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~Dlv~~ 421 (506)
..-+...+|||.|.|+|.++++|+..-.....|+..+..++.++.|.+. |+...+...-.++.. .+..||.|+.
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEE
Confidence 3444556899999999999999995333346899999999999988774 332211111122222 2369999998
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC-hhhHHHHHHHHhcCCce
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~ 473 (506)
+-.++-.+|..++.+|||||.+++--+ .+.++++-..++..+|.
T Consensus 170 --------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 170 --------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred --------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 777888999999999999999998543 34444444445556775
No 320
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.93 E-value=9.4e-05 Score=72.16 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=71.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~ 162 (506)
..|...+.+.+ +.+|||.|.|+|+++..|+.. .|.+.|+.......+..++. ..++. +.+...|....-|
T Consensus 30 ~~I~~~l~i~p--G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 30 SYILMRLDIRP--GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHTT--T--T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG--
T ss_pred HHHHHHcCCCC--CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceecccc
Confidence 34666665554 449999999999999999864 37888886644444433333 33443 6677777754333
Q ss_pred C---CCCeeEEEEcCcccccCCChHHHHHHHHHhc-CCCeEEEEEcCCC
Q 010592 163 A---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVL-RPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~---~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvL-kPGG~li~~~p~~ 207 (506)
. ++.||.|+.-. ++|..++..+.++| ||||++++-.|..
T Consensus 107 ~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 107 DEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 2 36899998732 44667899999999 8999999887754
No 321
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.93 E-value=3.4e-05 Score=76.22 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++......... ..++.+..+|+..++++
T Consensus 15 ~~~~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDT--DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCC--CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 44556666666443 3458999999999999999987 488899987655433322211 23467777888777765
Q ss_pred CCCeeEEEEcCcc
Q 010592 164 SRAFDMAHCSRCL 176 (506)
Q Consensus 164 ~~sfDlV~~~~~l 176 (506)
.||.|+++..+
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999998764
No 322
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.93 E-value=2.9e-05 Score=76.67 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=75.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cceecccc---------ccCCCCC
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IGIYHDWC---------EAFSTYP 413 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~~~~~~~---------~~~~~~p 413 (506)
+..-++|||||-||-....-+.+ ...++++|++.-.++.|..|.- +-.....+ +.+++-+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 34569999999999765555544 3579999999888998888742 10111111 1233222
Q ss_pred CceeEEEEcccccccc-CcCCHHHHHHHHhhhccCCcEEEEEeChh--hHHHHHHH
Q 010592 414 RTYDLIHAHGLFSLYK-DKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKI 466 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~-~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--~~~~~~~~ 466 (506)
..||+|-|..+|+..- .-.....+|..+.+-|||||++|-+-+.. ++..|+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 4499999999998543 22345579999999999999999876543 44445444
No 323
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.93 E-value=4.3e-06 Score=81.44 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=70.2
Q ss_pred CCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCC
Q 010592 103 VRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~ 182 (506)
+..+||+|||.|-++..=-.-.+.+.|++ ...+..++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c-----~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLC-----TGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchh-----hhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 55899999999965432211134555554 3333444444432 56677999999999999999999999998765
Q ss_pred h--HHHHHHHHHhcCCCeEEEEEc
Q 010592 183 D--GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 183 ~--~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ..+++|+.|+|||||...+.+
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 4 689999999999999987754
No 324
>PRK04148 hypothetical protein; Provisional
Probab=97.92 E-value=0.00011 Score=64.56 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=51.3
Q ss_pred CCCceEEeecCcccH-HHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--CceeEEEE
Q 010592 351 GRYRNIMDMNAGFGG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHA 421 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~-~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~Dlv~~ 421 (506)
.+..+|||||||+|. +|..|++.| .+|+++|.++..++.+.+++......|+.+ |... ..+|+|.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liys 83 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYS 83 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEE
Confidence 344679999999996 898999876 589999999999999999887555533332 1122 78999999
No 325
>PLN02476 O-methyltransferase
Probab=97.91 E-value=7.5e-05 Score=74.02 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=66.2
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CC-C----CCCCeeE
Q 010592 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MP-Y----ASRAFDM 169 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~-lp-~----~~~sfDl 169 (506)
.++|||||+|+|+.+.+++.. .++++|.++.....+. ++..+.|.. +.+..+++.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 458999999999999988863 3789999875443333 333344553 5666666532 22 1 2368999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99743 1222368899999999999999885
No 326
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.91 E-value=6.4e-05 Score=71.50 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=72.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccc
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~ 158 (506)
..++..+.+.. ..++||||||++|+-+.++++. .++++|+++.... .+.++..+.|. .+.+..+++.
T Consensus 34 g~lL~~l~~~~-----~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 34 GQLLQMLVRLT-----RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHH-----T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HH
T ss_pred HHHHHHHHHhc-----CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccH
Confidence 44555555554 2458999999999999999864 4899999875443 33334444444 3666666653
Q ss_pred c-CC-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 159 K-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 159 ~-lp-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ++ .+.+.||+|+.-. ...+-..++..+.+.|+|||.+++..
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hhHHHHHhccCCCceeEEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 2 22 1245899999743 22333678899999999999999863
No 327
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.91 E-value=0.00017 Score=67.40 Aligned_cols=138 Identities=17% Similarity=0.318 Sum_probs=88.8
Q ss_pred hhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccH--HHHHHHhCCCeEEEEeecCCCcccHH---HHHhc-Cc--c
Q 010592 328 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLG---VIYER-GL--I 399 (506)
Q Consensus 328 ~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~--~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~r-g~--~ 399 (506)
.+..+.|.+++.+-..++..+..... +++|||+|-|- .-.++.... .+++-+|....-+. .+..+ |+ +
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~---~~~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPD---LQVTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TT---SEEEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CCHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCC---CcEEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 34568898888877766666655544 69999999995 233333433 46888887765444 22222 55 2
Q ss_pred ceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe---ChhhHHHHHHHHhcCCceEEE
Q 010592 400 GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD---EVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 400 ~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d---~~~~~~~~~~~~~~~~w~~~~ 476 (506)
.+++...|+ +..+..||+|.| . ...++..++.-+.+.|||||.+++-- ..+.+.+.+...+.+++....
T Consensus 101 ~v~~~R~E~-~~~~~~fd~v~a----R---Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 101 EVINGRAEE-PEYRESFDVVTA----R---AVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp EEEES-HHH-TTTTT-EEEEEE----E---SSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred EEEEeeecc-cccCCCccEEEe----e---hhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 344444444 336699999998 3 33477888888999999999999854 334556666678888887654
Q ss_pred e
Q 010592 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 173 v 173 (184)
T PF02527_consen 173 V 173 (184)
T ss_dssp E
T ss_pred e
Confidence 3
No 328
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.91 E-value=2.8e-05 Score=77.45 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=58.7
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010592 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..++.+.+.+... .+.+|||||||+|.++..|+++ .++++|+++.++........ ...+.+..+|...+++++
T Consensus 29 ~i~~~i~~~l~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQ--PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCC--CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHH
Confidence 3445666666433 3458999999999999999987 58999998866644432221 145777888888877654
Q ss_pred CCeeEEEEcCc
Q 010592 165 RAFDMAHCSRC 175 (506)
Q Consensus 165 ~sfDlV~~~~~ 175 (506)
-.+|.|+++..
T Consensus 104 ~~~~~vv~NlP 114 (272)
T PRK00274 104 LQPLKVVANLP 114 (272)
T ss_pred cCcceEEEeCC
Confidence 33588888754
No 329
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.8e-05 Score=71.63 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=68.3
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--Cce
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTY 416 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~ 416 (506)
++..+......+||+||||+|..+|-|++-. ..|+.++..+...+.|+++ |+ .+++..+.+-.. +| ..|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCCCCCCCc
Confidence 4444555566889999999999999998853 4899999887777777654 33 123333444333 55 899
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.|+.+...... +.. +.+-|||||.++|-
T Consensus 140 D~I~Vtaaa~~v------P~~---Ll~QL~~gGrlv~P 168 (209)
T COG2518 140 DRIIVTAAAPEV------PEA---LLDQLKPGGRLVIP 168 (209)
T ss_pred CEEEEeeccCCC------CHH---HHHhcccCCEEEEE
Confidence 999996666522 223 34679999999994
No 330
>PLN02672 methionine S-methyltransferase
Probab=97.88 E-value=5.8e-05 Score=87.08 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=80.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------------------cceeccccccCCC-CC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------------------IGIYHDWCEAFST-YP 413 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------------------~~~~~~~~~~~~~-~p 413 (506)
.+|||+|||+|..+..|++... ...|+++|.++++++.|.+... ...+...+.++.. .+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4799999999999999987531 2489999999999998854311 0112222233222 22
Q ss_pred ---CceeEEEEccc---------cc-----cc--------cCcCCH-------------HHHHHHHhhhccCCcEEEEEe
Q 010592 414 ---RTYDLIHAHGL---------FS-----LY--------KDKCNI-------------EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 414 ---~s~Dlv~~~~~---------~~-----~~--------~~~~~~-------------~~~l~e~~RvLrPgG~~ii~d 455 (506)
..||+|.|+-= ++ +. .+.+.+ ..++.+..++|||||++++.-
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 26999998421 00 00 012222 468899999999999999976
Q ss_pred ChhhHHHHH-HHHhcCCceEE
Q 010592 456 EVDEIIKVK-KIVGGMRWDTK 475 (506)
Q Consensus 456 ~~~~~~~~~-~~~~~~~w~~~ 475 (506)
....-+.+. +++.+.+|+..
T Consensus 279 G~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 279 GGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred CccHHHHHHHHHHHHCCCCee
Confidence 666677788 68888887754
No 331
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.88 E-value=6.5e-05 Score=65.53 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=61.9
Q ss_pred EEeecCcccHHH--HHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceeccccc-cCCCCC-CceeEEEEccc
Q 010592 356 IMDMNAGFGGFA--AAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCE-AFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 356 vLD~gcG~G~~~--~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~-~~~~~p-~s~Dlv~~~~~ 424 (506)
++|+|||+|... ..+...+ ..++++|.++.|+..+..+.. .....+... .++..+ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333322 467779999988988555431 111111111 133333 389999 6444
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
..+.. .+...+.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLL---PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcC---CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 44222 2788999999999999999997654
No 332
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.85 E-value=0.00012 Score=71.94 Aligned_cols=106 Identities=21% Similarity=0.322 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcCCCe--EEEEecccc---CCCCCCCeeE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIK---MPYASRAFDM 169 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~di~~~~~~~a~~~~~~~--~~~~~d~~~---lp~~~~sfDl 169 (506)
+..-+||||.||.|.+....... .+...|+++..+. ...+..+++|+.. .|...|+.+ +.--+...++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~-~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE-KGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH-HHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 44568999999999877666543 3677889886653 4445666777763 677777643 2222446799
Q ss_pred EEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 170 AHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.+..++.+.++. ...+.-+.+.|.|||++|.+..|.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 99998887766544 467899999999999999997443
No 333
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00018 Score=66.38 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=60.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+++|+|+|||||.++...+-. .|+++|+++..+ +...+++.+.+..+.+.+.|+.+.. +.||.|+.+.-+=-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 4568999999999876665544 599999988544 5555666665667888888887654 46889998765532
Q ss_pred cCCCh-HHHHHHHHHhc
Q 010592 179 WGAND-GRYMIEVDRVL 194 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvL 194 (506)
+.... ..++..+.++-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 22222 46666666653
No 334
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.84 E-value=0.00016 Score=69.05 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=71.3
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec--cccccCC-CCCCceeE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH--DWCEAFS-TYPRTYDL 418 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~--~~~~~~~-~~p~s~Dl 418 (506)
...+.++||++|.++|.-+..|+..---...++.+|..+++.++|++- |+-. .+. ++-+.++ ....+||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 344678899999999998888876311134799999999999988763 4322 222 3444455 35699999
Q ss_pred EEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
|+... .+.+-+..|.+.-+.|||||.+++
T Consensus 136 iFIDa------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFIDA------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEeC------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 99811 122446899999999999999998
No 335
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.83 E-value=9.1e-05 Score=77.18 Aligned_cols=114 Identities=8% Similarity=0.139 Sum_probs=76.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cceeccccccCCCC----CCceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IGIYHDWCEAFSTY----PRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~~~~~~~~~~~~~----p~s~Dlv~~~~~~ 425 (506)
..+|||++||+|.++..++.++ ..|+++|.++.+++.|.+.. . +..+...+.++..+ ...||+|.++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence 3579999999999999999765 57999999999999887642 1 11222233333221 1469999984
Q ss_pred ccccCcCCH-HHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeec
Q 010592 426 SLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 426 ~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~ 479 (506)
+++..+ ..++..+ .-++|++.++++.... ..+.++.+ .+|++..+..
T Consensus 308 ---PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 308 ---PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIERVQL 356 (374)
T ss_pred ---CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEE
Confidence 234433 3444555 4589999999987654 44556655 5788765433
No 336
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.83 E-value=0.00014 Score=71.69 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=57.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++........ ....+.+...|+..++++
T Consensus 15 ~~i~~~i~~~~~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVL--EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCC--CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh
Confidence 33445666666433 3458999999999999999987 58889998765543322221 123466777788777765
Q ss_pred CCCee---EEEEcCcc
Q 010592 164 SRAFD---MAHCSRCL 176 (506)
Q Consensus 164 ~~sfD---lV~~~~~l 176 (506)
+|| +|+++..+
T Consensus 91 --~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --DFPKQLKVVSNLPY 104 (253)
T ss_pred --HcCCcceEEEcCCh
Confidence 566 78876543
No 337
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.82 E-value=6.1e-05 Score=71.61 Aligned_cols=136 Identities=17% Similarity=0.128 Sum_probs=87.4
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccceecccc----ccCCCC-----CC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWC----EAFSTY-----PR 414 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~~~~~~~----~~~~~~-----p~ 414 (506)
+...+.++||++||++|.-+.+|++.-.....|+.+|.++.+.++|.+ .|+-..++... +-++.+ ++
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 334457799999999999999998631123589999999999988855 25422111111 112221 25
Q ss_pred ceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEEee
Q 010592 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~~~ 478 (506)
+||+|+.+.- +..-...+..+.+.|||||.+++-+.+- ..+-.+.+...=++++.+..
T Consensus 121 ~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp 194 (205)
T PF01596_consen 121 QFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP 194 (205)
T ss_dssp SEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC
T ss_pred ceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE
Confidence 8999998331 2344568888889999999999954321 12333445677788888876
Q ss_pred cCCCCCCCeEEEEEEec
Q 010592 479 HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 479 ~~~~~~~~~~~l~~~k~ 495 (506)
..| .+++++|+
T Consensus 195 igd------Gl~l~~K~ 205 (205)
T PF01596_consen 195 IGD------GLTLARKR 205 (205)
T ss_dssp STT------EEEEEEE-
T ss_pred eCC------eeEEEEEC
Confidence 664 36777774
No 338
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.81 E-value=0.00018 Score=70.86 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=94.7
Q ss_pred HHHHHHHHhhCCC--CCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc----C----------
Q 010592 86 DKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER----G---------- 147 (506)
Q Consensus 86 ~~~~~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~----~---------- 147 (506)
...++.|.+.++. ......+||--|||.|+++-.++.+| +.+.++|-.|+-... +.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceec
Confidence 5566777777652 22334689999999999999999986 667777766642221 22111 0
Q ss_pred ---------------C-------------CeEEEEeccccCCCCC---CCeeEEEEcCcccccCCChHHHHHHHHHhcCC
Q 010592 148 ---------------V-------------PAVIGVLGTIKMPYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP 196 (506)
Q Consensus 148 ---------------~-------------~~~~~~~d~~~lp~~~---~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP 196 (506)
+ ......+|...+..++ ++||+|++.+. +.-..+.-.+|..+.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHHHHHHHHHHHHHhcc
Confidence 0 0111222333332233 69999998753 34334446899999999999
Q ss_pred CeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecccc
Q 010592 197 GGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEK 245 (506)
Q Consensus 197 GG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~ 245 (506)
||++|=.+|-..+..... ......++-.++.+..+.+.++|+.+.+.
T Consensus 195 gG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 195 GGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 998887776553322110 00111233446678888888899887643
No 339
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.81 E-value=3.2e-05 Score=79.58 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=79.9
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-------
Q 010592 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI------- 399 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~------- 399 (506)
+.++...|..+ ..+..+...+..+. .++|+|||+|+...++..-. .-++++++.++..+.++.+.-..
T Consensus 88 ~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~ 162 (364)
T KOG1269|consen 88 GNSNEMFWIRH-EGIVALRESCFPGS--KVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKC 162 (364)
T ss_pred hhHHHHHHHhh-cchHHHhhcCcccc--cccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 44444556533 33444444444443 78999999999988887632 35788888886666655443211
Q ss_pred ceeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 400 GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 400 ~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
...-.|+...|+-+++||.+.+..+.. |-.+...+++|+.|||+|||+++.
T Consensus 163 ~~~~~~~~~~~fedn~fd~v~~ld~~~---~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 163 NFVVADFGKMPFEDNTFDGVRFLEVVC---HAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ceehhhhhcCCCCccccCcEEEEeecc---cCCcHHHHHHHHhcccCCCceEEe
Confidence 112224444566669999999966666 455778899999999999999999
No 340
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.80 E-value=3.2e-05 Score=79.58 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=74.9
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+..++|+|||.|....+++.. ++++++.++..+........... .....+...+....||+++.||.+.+..+..|
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 347999999999888888754 57777776654443333222211 11233466778889999999999999999878
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++...+++|++|+++|||+++..
T Consensus 191 -~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 191 -APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -CCcHHHHHHHHhcccCCCceEEeH
Confidence 567899999999999999999985
No 341
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.80 E-value=9.6e-05 Score=74.36 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010592 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
....+|+|.|.|+.+..+..+ ++.++++....+.+++...+ ..+..+-+|..+- .| +-|+|++.++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P--~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TP--KGDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceeccccccc-CC--CcCeEEEEeecccCC
Confidence 468999999999999999876 57888885443333333332 2244444454332 33 345999999999998
Q ss_pred CCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010592 181 AND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 181 ~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
++. ..+|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 766 8999999999999999999653
No 342
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.79 E-value=2.4e-05 Score=76.55 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=68.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHH---------------HHcC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFA---------------LERG 147 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a---------------~~~~ 147 (506)
...+..+.+.+.....++.++||||||.-.+-..-+.. .++..|+++....+-..... ...|
T Consensus 40 ~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg 119 (256)
T PF01234_consen 40 LFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEG 119 (256)
T ss_dssp HHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccC
Confidence 33444555555433445679999999997554333322 58888887654422111111 0011
Q ss_pred C-------------C-eEEEEeccccC-CCCC-----CCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEc
Q 010592 148 V-------------P-AVIGVLGTIKM-PYAS-----RAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 ~-------------~-~~~~~~d~~~l-p~~~-----~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~ 204 (506)
. . -.+...|..+. |+.. ..||+|++.+|++....+. ..+++++.++|||||.|++.+
T Consensus 120 ~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 120 KREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0 0 12333455433 2322 3599999999998777766 478999999999999999965
No 343
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.77 E-value=0.00018 Score=76.46 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=74.2
Q ss_pred CChhhhhhhhhhhHHHHHH-HHHHhhhcCCCC----CceEEeecCcccHHHHHHHhCC---CeEEEEeecCCCcccHHHH
Q 010592 322 VSAESYQEDSNKWKKHVNA-YKKINRLLDSGR----YRNIMDMNAGFGGFAAAIQSSK---LWVMNVVPTLADKNTLGVI 393 (506)
Q Consensus 322 ~~~~~f~~d~~~W~~~v~~-y~~~~~~~~~~~----~r~vLD~gcG~G~~~~~l~~~~---~~~~~v~~~d~~~~~l~~~ 393 (506)
.+-|.|+.|.-+.+..-.. +..+...+.... ...|||+|||+|-+...-++.+ .....|.+++.+++.....
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l 230 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL 230 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH
Confidence 3678999998665543332 233333444432 3469999999999865443321 1246899999886655432
Q ss_pred ----HhcCccceeccccccCCCC--CCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEE
Q 010592 394 ----YERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 394 ----~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
.+.|.-..++-...++... |..+|+|.+=-+ -......-++..|.-.+|.|||||.+|
T Consensus 231 ~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 231 QKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2334323233334555544 489999998211 111233456678999999999998665
No 344
>PLN02823 spermine synthase
Probab=97.75 E-value=0.00018 Score=73.56 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+++||.||+|.|..++.+++. .++++|+++..+.-+...+... ....+.+...|... +....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999988774 4788888775443332222111 12345666666643 3334578999998
Q ss_pred cCcccccCCC------hHHHHH-HHHHhcCCCeEEEEEc
Q 010592 173 SRCLIPWGAN------DGRYMI-EVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~------~~~~l~-e~~rvLkPGG~li~~~ 204 (506)
-. ..++... ...+++ .+.+.|+|||.+++..
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 53 2222111 146787 8999999999998754
No 345
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.73 E-value=6e-05 Score=75.23 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=78.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccH----HHHHHHhC-C--CeEEEEeecCCCcccHHHHHhcC
Q 010592 325 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG----FAAAIQSS-K--LWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 325 ~~f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~~-~--~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
..|-.|...|+...... .. .++.-+|...||.||. +|..|.+. + .+...|+++|+++++|+.|.+--
T Consensus 94 T~FFRd~~~f~~L~~~~---~~---~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 94 TAFFREAHHFPILAEHA---RR---RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CCccCCcHHHHHHHHHH---Hh---cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 34555666666443321 11 1122479999999998 34334442 1 12468999999999999886521
Q ss_pred --------cc----------------c--------------eeccccccCCCC--CCceeEEEEccccccccCcCCHHHH
Q 010592 398 --------LI----------------G--------------IYHDWCEAFSTY--PRTYDLIHAHGLFSLYKDKCNIEDI 437 (506)
Q Consensus 398 --------~~----------------~--------------~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~~~~~~~~~~ 437 (506)
+. + ..|+..+ . .+ ++.||+|.|-++|.+.. ......+
T Consensus 168 Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~-~-~~~~~~~fD~I~cRNvliyF~-~~~~~~v 244 (287)
T PRK10611 168 YRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA-K-QWAVPGPFDAIFCRNVMIYFD-KTTQERI 244 (287)
T ss_pred CCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC-C-CCccCCCcceeeHhhHHhcCC-HHHHHHH
Confidence 00 0 0111111 0 12 28899999999998553 3456789
Q ss_pred HHHHhhhccCCcEEEEEeCh
Q 010592 438 LLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 438 l~e~~RvLrPgG~~ii~d~~ 457 (506)
+..+.+.|+|||+|++-...
T Consensus 245 l~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 245 LRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHhCCCcEEEEeCcc
Confidence 99999999999999996543
No 346
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.72 E-value=0.00011 Score=73.86 Aligned_cols=87 Identities=21% Similarity=0.246 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~ 162 (506)
...++.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++.....+++... ...+.+...|+...++
T Consensus 22 ~~i~~~Iv~~~~~~--~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIK--PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCC--CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 34556666666443 3458999999999999999876 58999998866654443333221 2346777778766554
Q ss_pred CCCCeeEEEEcCcc
Q 010592 163 ASRAFDMAHCSRCL 176 (506)
Q Consensus 163 ~~~sfDlV~~~~~l 176 (506)
+ .||.|+++..+
T Consensus 100 ~--~~d~VvaNlPY 111 (294)
T PTZ00338 100 P--YFDVCVANVPY 111 (294)
T ss_pred c--ccCEEEecCCc
Confidence 3 68999987644
No 347
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.72 E-value=0.00024 Score=67.19 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=74.8
Q ss_pred CCeEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh--C--CcEEEecCccchHHHHHHHHH
Q 010592 69 GNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFAL 144 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~--~--~v~~vdis~~di~~~~~~~a~ 144 (506)
+-.|.+.-....|..+...--.++.+.+ .++.+|||+-||.|.|+..+++ + .|.++|++|..+ +.+.+.++
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~ 146 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLV----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIR 146 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcC----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHH
Confidence 3444455555566666544435677665 3355999999999999999988 3 489999998544 45555555
Q ss_pred HcCCC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEE
Q 010592 145 ERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 145 ~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li 201 (506)
.+++. +.....|...++. .+.||.|+++. +.....+|..+.+++++||.+-
T Consensus 147 lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 147 LNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 55554 4556777766654 78999999864 2233568999999999999874
No 348
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00013 Score=67.31 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=84.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCCCCceeEEEEccccccccC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~ 430 (506)
.++|+|+|||||.|+-..+-.| .-.|+++|..+++++++++.- +.+.+...+.++..+..-||.|..+-=|-....
T Consensus 46 g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 5679999999999876655544 257999999999999887642 345566667888889999999999888876665
Q ss_pred cCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEe
Q 010592 431 KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
+.|.+.++.-+ ++ .=.++=.......+-+++.+..++..+...
T Consensus 124 haDr~Fl~~Al-e~---s~vVYsiH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKAL-EI---SDVVYSIHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHH-Hh---hheEEEeeccccHHHHHHHHHhcCCeEEEE
Confidence 66765443322 11 122333344557788888899988776644
No 349
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=0.00015 Score=68.98 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=67.9
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceec--------------------------
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYH-------------------------- 403 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~-------------------------- 403 (506)
-+|||||..|.+.+.+++. .-...|+++|+.+-.++.|.+.-- .....
T Consensus 61 ~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~ 139 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT 139 (288)
T ss_pred eeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence 4999999999999999875 223569999999888888876421 00000
Q ss_pred -----ccc-------c--cCCCCC-CceeEEEEccccc--cccCcC-CHHHHHHHHhhhccCCcEEEEE
Q 010592 404 -----DWC-------E--AFSTYP-RTYDLIHAHGLFS--LYKDKC-NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 404 -----~~~-------~--~~~~~p-~s~Dlv~~~~~~~--~~~~~~-~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.|. + +|-... .-||+|.|-++=- |+.+.. .+-..+..+.|.|.|||+||+.
T Consensus 140 ~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 140 DFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 0 011122 6799999944432 444444 4788999999999999999993
No 350
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.64 E-value=0.00019 Score=67.74 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=74.4
Q ss_pred CEEEEECCCCChhHHHHhh-CCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC---CCCeeEEEEcCccccc
Q 010592 104 RTALDTGCGVASWGAYLWS-RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA---SRAFDMAHCSRCLIPW 179 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~-~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~---~~sfDlV~~~~~l~~~ 179 (506)
.++|||||=+......-.. -.|+.+|+.+.. -.+...|....|.| +++||+|.|+.++..
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf- 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSLVLNF- 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEEEEee-
Confidence 5899999975543322211 147888886531 12345577666653 679999999999855
Q ss_pred CCCh---HHHHHHHHHhcCCCeE-----EEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecc
Q 010592 180 GAND---GRYMIEVDRVLRPGGY-----WVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKS 243 (506)
Q Consensus 180 ~~~~---~~~l~e~~rvLkPGG~-----li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~ 243 (506)
.+++ ...+..+.+.|+|+|. |+++.|...... . -+...+.+..+.+.+++..+.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~N--S--------Ry~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTN--S--------RYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhc--c--------cccCHHHHHHHHHhCCcEEEE
Confidence 5555 5899999999999999 999887653210 0 011234566666777665543
No 351
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=4.1e-05 Score=74.73 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=69.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCcCC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~ 433 (506)
..++|+|||.|-. +...+ ..-+++.|.+...+..+...|-......-+-.+|.-+.+||.+.+..+++|+..++.
T Consensus 47 sv~~d~gCGngky---~~~~p--~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 47 SVGLDVGCGNGKY---LGVNP--LCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred ceeeecccCCccc---CcCCC--cceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 3599999999954 33322 245788899977777887766422222212334444599999999999998887877
Q ss_pred HHHHHHHHhhhccCCcEEEE
Q 010592 434 IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii 453 (506)
=..+|.|+-|+|||||...|
T Consensus 122 R~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALV 141 (293)
T ss_pred HHHHHHHHHHHhcCCCceEE
Confidence 78999999999999998666
No 352
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.63 E-value=0.00013 Score=77.32 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=60.8
Q ss_pred CCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlV~~ 172 (506)
...|||||||+|-+....++. .|.+++-++..... ..+.....+ ..+.+...+++.+..+. .+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~-l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT-LQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH-HHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH-HHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 458999999999887555432 58889887743322 112223333 35788888888887654 8999998
Q ss_pred cCcccccCCCh--HHHHHHHHHhcCCCeEEE
Q 010592 173 SRCLIPWGAND--GRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 173 ~~~l~~~~~~~--~~~l~e~~rvLkPGG~li 201 (506)
-..- .+..+. ...|....|.|||||.++
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 5432 222222 577899999999999876
No 353
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.62 E-value=9e-05 Score=73.82 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=50.7
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-Cc--eeEEEEc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RT--YDLIHAH 422 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s--~Dlv~~~ 422 (506)
......+|||+|||+|.++..|++.+ ..|+++|.+++|++.+.++.....++..+.++..++ .. +|.|+++
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 33445689999999999999999875 389999999999999987631122333345555444 22 5888874
No 354
>PRK04148 hypothetical protein; Provisional
Probab=97.61 E-value=0.00056 Score=60.16 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=63.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCCh-hHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-CC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVAS-WGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-SR 165 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~-~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~-~~ 165 (506)
+.|.+.++. ..+.+|||||||.|. ++..|++.+ |+++|+++ ..++.+++.+. ...+.|...-.+. -+
T Consensus 6 ~~l~~~~~~--~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~--~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEK--GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGL--NAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhccc--ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCC--eEEECcCCCCCHHHHh
Confidence 345555533 334689999999995 888898875 77777765 35666666654 4445566554433 45
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+|+|++... +++....+.++.+.+ |.-+++.
T Consensus 77 ~a~liysirp----p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 77 NAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred cCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 7999999763 233355566666654 4445554
No 355
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.59 E-value=0.0003 Score=66.62 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=61.2
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCCCceeEEEEcccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYPRTYDLIHAHGLF 425 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p~s~Dlv~~~~~~ 425 (506)
.+|||+|||+|.++..++.++ ...|+++|.++..++.+.+. |+ ..+...+.++ +.....||+|.++-=|
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 479999999999998655544 25899999999998877653 22 1122222322 1123579999994443
Q ss_pred ccccCcCC-HHHHHHHHh--hhccCCcEEEEEeCh
Q 010592 426 SLYKDKCN-IEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 426 ~~~~~~~~-~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
. .. .+.++.-+. .+|+|+|.+++....
T Consensus 132 ~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 R-----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C-----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2 22 233444443 358999999997654
No 356
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.59 E-value=0.00024 Score=69.62 Aligned_cols=141 Identities=15% Similarity=0.244 Sum_probs=84.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--------------------cCc-------------
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--------------------RGL------------- 398 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--------------------rg~------------- 398 (506)
+.+++||+|||+-.+- .|... -+.-+++..|.++..++.... .|-
T Consensus 56 ~g~~llDiGsGPtiy~-~lsa~-~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ-LLSAC-EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG-GTTGG-GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh-hhhHH-HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3568999999996552 33222 356788888888777652211 010
Q ss_pred -cc-eec-cccc--cCCC---CCCceeEEEEccccccc-cCcCCHHHHHHHHhhhccCCcEEEEEeChh-----------
Q 010592 399 -IG-IYH-DWCE--AFST---YPRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD----------- 458 (506)
Q Consensus 399 -~~-~~~-~~~~--~~~~---~p~s~Dlv~~~~~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------- 458 (506)
+. ++. |..+ .+.. .|..||+|.+...+... .++.....+|..|-+.|||||.||+..-++
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 10 110 0111 1221 34569999997777732 334445689999999999999999953321
Q ss_pred -----hHHHHHHHHhcCCceEEEeecCC--CCCCCeEEEEEEe
Q 010592 459 -----EIIKVKKIVGGMRWDTKMVDHED--GPLVPEKILVAVK 494 (506)
Q Consensus 459 -----~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~l~~~k 494 (506)
..+.|++.++..+.++...+... -..+...+++|||
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 56788899999999988766421 1223577888887
No 357
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.58 E-value=0.00025 Score=69.81 Aligned_cols=74 Identities=5% Similarity=0.015 Sum_probs=51.4
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC-Ccee---EEE
Q 010592 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYD---LIH 420 (506)
Q Consensus 346 ~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p-~s~D---lv~ 420 (506)
..+...+..+|||+|||+|.++..|++.+ ..|+++|.+++|++.+.++-- ...+.-.+.++..++ ..|| +|.
T Consensus 23 ~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~~~vv 99 (253)
T TIGR00755 23 EAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQLKVV 99 (253)
T ss_pred HhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCcceEE
Confidence 33444456789999999999999999876 359999999999998876521 122222234555445 4677 777
Q ss_pred Ec
Q 010592 421 AH 422 (506)
Q Consensus 421 ~~ 422 (506)
++
T Consensus 100 sN 101 (253)
T TIGR00755 100 SN 101 (253)
T ss_pred Ec
Confidence 63
No 358
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.57 E-value=0.00028 Score=68.97 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEec
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLG 156 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d 156 (506)
..-.++..+.+.. ..++|||||+++|+-+.+++.. .++++|.++.....+. +.-.+.|. .+.+..++
T Consensus 66 ~~g~lL~~l~~~~-----~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~~~~I~~~~G~ 139 (247)
T PLN02589 66 DEGQFLNMLLKLI-----NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGVAHKIDFREGP 139 (247)
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEecc
Confidence 3345555555554 2358999999999988888753 4889999774433222 22233343 35555555
Q ss_pred ccc-CCC------CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 157 TIK-MPY------ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 157 ~~~-lp~------~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+.. |+- ..++||+|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 432 221 136899999743 2222367888889999999998874
No 359
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.57 E-value=0.0009 Score=65.84 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=85.5
Q ss_pred CCCceEEeecCcccHHHHHHH-hCCCeEEEEeecCCCcccHH----HHHhcCccceeccccc-cCC-----CCCCceeEE
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQ-SSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCE-AFS-----TYPRTYDLI 419 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~-~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~~-~~~-----~~p~s~Dlv 419 (506)
+.--+||||.||.|....... +.+.-...|.-.|.++..++ .+.+||+-.++..-+. +|. ...-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 445589999999999754443 33322457888899988876 6778888554333222 121 122457899
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC--hhhHHHHHHHHhc----CCceEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGG----MRWDTK 475 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~~----~~w~~~ 475 (506)
..+++|....+..-+...|.-+.++|.|||+||.+-. -+.++.|...+.+ ..|.++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE
Confidence 9999999887665677899999999999999999753 2345555555544 346644
No 360
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.55 E-value=0.0001 Score=68.41 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=81.1
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeE
Q 010592 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAV 151 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~ 151 (506)
|.+.|.+|--..++|...+.---+.......++||+|+|.|..+..++.. .|.+.++| ..++..-+..+.++.
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS-----~tMr~rL~kk~ynVl 158 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-----WTMRDRLKKKNYNVL 158 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-----HHHHHHHhhcCCcee
Confidence 66777777666666643332211222233468999999999999888765 35555544 455555544443322
Q ss_pred EEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCC-CeEEEEE--cCCCCccc
Q 010592 152 IGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP-GGYWVLS--GPPINWKT 211 (506)
Q Consensus 152 ~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP-GG~li~~--~p~~~~~~ 211 (506)
......-.+-+||+|.|...+. -..++..+|+.+..+|+| .|.++++ -|-..+..
T Consensus 159 ----~~~ew~~t~~k~dli~clNlLD-Rc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE 216 (288)
T KOG3987|consen 159 ----TEIEWLQTDVKLDLILCLNLLD-RCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVE 216 (288)
T ss_pred ----eehhhhhcCceeehHHHHHHHH-hhcChHHHHHHHHHHhccCCCcEEEEEEecccceee
Confidence 2222222244799999988773 366789999999999999 8888874 25444433
No 361
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.53 E-value=0.00016 Score=71.47 Aligned_cols=72 Identities=7% Similarity=0.079 Sum_probs=53.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC-CceeEEEEcccc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p-~s~Dlv~~~~~~ 425 (506)
....+|||+|||+|.++..|++.+ ..|+++|.++.|++.+.++-- ...+...++++..++ ..||.|.++--+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY 101 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCc
Confidence 345789999999999999999874 479999999999999887631 223333455665555 568999985444
No 362
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00049 Score=62.85 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCEEEEECCCCChhHHHHhhC-C----cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010592 103 VRTALDTGCGVASWGAYLWSR-N----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-~----v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
..-+||||||+|..+..|++. + +.++|++|... ++..+-|+.++..+..++.|...- +..++.|+++.+.-+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 447999999999999999876 2 67889988533 444556666666655665554321 2238999999876554
Q ss_pred ccCCCh--------------------HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 178 PWGAND--------------------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~--------------------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+-.+.+ .+++..+..+|.|.|.|++..-.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 322211 14666777888999999998643
No 363
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00062 Score=63.65 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC----Cc--EEEecCccchHHHHHHHHHHc---------------CCCeEEEEeccccC
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NV--IAMSFAPRDSHEAQVQFALER---------------GVPAVIGVLGTIKM 160 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v--~~vdis~~di~~~~~~~a~~~---------------~~~~~~~~~d~~~l 160 (506)
++.+.||+|.|+|+++..++.. +. .+++. .+..++.+.++ ..+..+.++|....
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh-----~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEH-----IPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhh-----hHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 4558999999999988777643 33 44444 33444433321 12345667777776
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
--+...||.|+|.... ....+++...|+|||.+++-.
T Consensus 157 ~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 6677899999997432 345578888899999999854
No 364
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.52 E-value=0.00052 Score=71.51 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=66.1
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+|||++||+|.++..++.. .|+++|+++..+.... +.+..+++. ..+...|+..+....+.||+|++..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 48999999999999998754 3899999885553333 333444444 3356666654321145799999853
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+ ..+..++..+.+.+++||+++++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 234678888888899999999985
No 365
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00054 Score=71.71 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=79.1
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010592 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
++|-+|||.-.+...+-+- .++.+|+|+..+.......+. ......+...|...+.|++.+||+|+--..+.++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998888776 478889988777665555553 234567788899999999999999999888877655
Q ss_pred ChH---------HHHHHHHHhcCCCeEEEEEc
Q 010592 182 NDG---------RYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 182 ~~~---------~~l~e~~rvLkPGG~li~~~ 204 (506)
+.. ..+.++.|+|+|||.++..+
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 443 45789999999999987754
No 366
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.50 E-value=0.0024 Score=62.08 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=84.4
Q ss_pred hhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-------Ccccee
Q 010592 330 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-------GLIGIY 402 (506)
Q Consensus 330 d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-------g~~~~~ 402 (506)
+++-|-..|-+-.+-..... ...+||+|||+|-.+..|+.. ..-..|+++|.|+..+..|.+. |-+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~---~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSK---HTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcc---cceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 45667666654332222222 226999999999998888763 2246799999999999888774 224444
Q ss_pred cc-----ccccCCCCCCceeEEEEccc--cc-----------cccCcCCH----------HHHHHHHhhhccCCcEEEEE
Q 010592 403 HD-----WCEAFSTYPRTYDLIHAHGL--FS-----------LYKDKCNI----------EDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 403 ~~-----~~~~~~~~p~s~Dlv~~~~~--~~-----------~~~~~~~~----------~~~l~e~~RvLrPgG~~ii~ 454 (506)
|. |....+...+.+|++.|+-= ++ .+.++..+ ..++.=.-|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 33 22222223399999998531 11 00011100 13566678999999999995
Q ss_pred eC-----hhhH-HHHHHHHhcCCceEEEe
Q 010592 455 DE-----VDEI-IKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 455 d~-----~~~~-~~~~~~~~~~~w~~~~~ 477 (506)
-. ...+ -.|+..++.--|.+.+.
T Consensus 285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~ 313 (328)
T KOG2904|consen 285 LVERKEHSYLVRIWMISLKDDSNGKAAVV 313 (328)
T ss_pred ecccccCcHHHHHHHHhchhhccchhhee
Confidence 33 2223 33344455555555543
No 367
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.50 E-value=0.00099 Score=62.64 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=62.2
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CC-C-CC-CCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MP-Y-AS-RAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~-lp-~-~~-~sfDlV~~~ 173 (506)
+.+|||++||+|.++..++.++ ++++|.++..+... .+.+...+.. +.+...|... +. + .. ..||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~-~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTL-KENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHH-HHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 4589999999999999999873 78888877544322 2333333432 4566666632 22 1 12 247888876
Q ss_pred CcccccCCChHHHHHHHH--HhcCCCeEEEEEcC
Q 010592 174 RCLIPWGANDGRYMIEVD--RVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p 205 (506)
.-+.. .....++..+. .+|+++|.+++..+
T Consensus 129 PPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 53311 11244454443 47899999988754
No 368
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.49 E-value=0.00037 Score=64.81 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=58.9
Q ss_pred HHHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhCC-----cEEEecCccchHHHHHHHHHHcCCCeEEEEecc-----
Q 010592 89 IDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT----- 157 (506)
Q Consensus 89 ~~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~~-----v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~----- 157 (506)
+.++.+..+ ...+.+.+|||+||++|.|+..+.++. +.++|+.+.... ........|.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhH
Confidence 345555555 334456799999999999999999874 788888764110 1111112221
Q ss_pred -ccC----CCCCCCeeEEEEcCcccccCC----Ch-------HHHHHHHHHhcCCCeEEEEEc
Q 010592 158 -IKM----PYASRAFDMAHCSRCLIPWGA----ND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 -~~l----p~~~~sfDlV~~~~~l~~~~~----~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+ +-..+.||+|+|-.+. .... +. ...+.-+...|+|||.|++..
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 111 1123689999996532 1111 11 134555667899999988864
No 369
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.48 E-value=0.0017 Score=69.38 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCe-EEEEeccccCC-CCCCCeeEEE--
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKMP-YASRAFDMAH-- 171 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~-~~~~~d~~~lp-~~~~sfDlV~-- 171 (506)
.++.+|||++||.|.=+.+|++. .+++.|+++.-+ +...+...+-|+.. .+...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 45569999999999877777764 378899987544 23334444456654 44455655443 2245799999
Q ss_pred --EcCcccccCCCh------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 172 --CSRCLIPWGAND------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 --~~~~l~~~~~~~------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+..- .+..++ ..+|..+.++|||||+|+.++-..
T Consensus 191 aPCSG~G-~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEG-TVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCc-ccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 55322 111222 367889999999999999987544
No 370
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.47 E-value=0.00076 Score=66.58 Aligned_cols=127 Identities=16% Similarity=0.255 Sum_probs=80.7
Q ss_pred hhhhhhhhHHHHHHHHH-HhhhcCCCCCceEEeecCcccH----HHHHHHhCC----CeEEEEeecCCCcccHHHHHhcC
Q 010592 327 YQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGG----FAAAIQSSK----LWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~-~~~~~~~~~~r~vLD~gcG~G~----~~~~l~~~~----~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
|--+.+.|.....+-.- +..... ++.-+|.-+||+||. +|-.|.+.. .+..+|.++|++...|+.|.. |
T Consensus 71 FFR~~~~f~~l~~~v~p~l~~~~~-~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~-G 148 (268)
T COG1352 71 FFRDPEHFEELRDEVLPELVKRKK-GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA-G 148 (268)
T ss_pred hccCcHHHHHHHHHHHHHHHhhcc-CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc-C
Confidence 55555666544333211 222111 135579999999997 444444433 246899999999999987753 2
Q ss_pred ccc-------------------------------------eeccccccCCCCCCceeEEEEccccccccCcCCHHHHHHH
Q 010592 398 LIG-------------------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLE 440 (506)
Q Consensus 398 ~~~-------------------------------------~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e 440 (506)
..+ ..|++-.+-+ +++-||+|+|-+|+-... ...-..++..
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd-~~~q~~il~~ 226 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFD-EETQERILRR 226 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeC-HHHHHHHHHH
Confidence 211 0111111111 447799999999988554 4445689999
Q ss_pred HhhhccCCcEEEEEeCh
Q 010592 441 MDRILRPEGAIIIRDEV 457 (506)
Q Consensus 441 ~~RvLrPgG~~ii~d~~ 457 (506)
++..|+|||+|+|-...
T Consensus 227 f~~~L~~gG~LflG~sE 243 (268)
T COG1352 227 FADSLKPGGLLFLGHSE 243 (268)
T ss_pred HHHHhCCCCEEEEccCc
Confidence 99999999999996554
No 371
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.44 E-value=0.00029 Score=65.30 Aligned_cols=101 Identities=21% Similarity=0.328 Sum_probs=62.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----C------ccceeccccccCC--CCC-Ccee
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G------LIGIYHDWCEAFS--TYP-RTYD 417 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g------~~~~~~~~~~~~~--~~p-~s~D 417 (506)
....+||++|||+|-.+..++... ....|+..|.++ .++..... + +.....+|.+..+ ..+ +.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 345689999999997766666641 236799999885 66643321 1 1223446776441 123 7899
Q ss_pred EEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 418 lv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|.++.++- .....+.++.=+.++|+|+|.+++...
T Consensus 122 ~IlasDv~Y---~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLY---DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccc---hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999988886 345667888999999999999888544
No 372
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.43 E-value=0.0022 Score=63.29 Aligned_cols=119 Identities=16% Similarity=0.256 Sum_probs=81.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhc----C---ccceecccccc--------------
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYER----G---LIGIYHDWCEA-------------- 408 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~r----g---~~~~~~~~~~~-------------- 408 (506)
--+||==|||.|+++-.++..| ..+.+.+.|.-|+= .+... + +.+.+|.++..
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4479999999999999999987 57888899877753 33332 1 11222222221
Q ss_pred -------------------CCC-CC-----CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE--------Ee
Q 010592 409 -------------------FST-YP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--------RD 455 (506)
Q Consensus 409 -------------------~~~-~p-----~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii--------~d 455 (506)
|-. |+ ++||.|.+...+... .++-+.|..|.++|||||+.|= .+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 111 22 489988876555422 2678899999999999994442 23
Q ss_pred C-------hh-hHHHHHHHHhcCCceEEEe
Q 010592 456 E-------VD-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 456 ~-------~~-~~~~~~~~~~~~~w~~~~~ 477 (506)
. ++ ..++|+.++++++|++...
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 2 22 6799999999999997643
No 373
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.41 E-value=0.00072 Score=62.97 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=68.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C-----------cEEEecCccchHHHHHHHHHHcCCC--eEEEE
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N-----------VIAMSFAPRDSHEAQVQFALERGVP--AVIGV 154 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~-----------v~~vdis~~di~~~~~~~a~~~~~~--~~~~~ 154 (506)
..+..+.... ++..|||--||+|.+....+.. . +.+.|+++..+..+..+ +...+.. +.+.+
T Consensus 18 ~~ll~la~~~--~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 18 AALLNLAGWR--PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE
T ss_pred HHHHHHhCCC--CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEe
Confidence 3445555333 3458999999999988665432 3 45999988777554443 3444443 67777
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
.|+..+++.++++|.|+++.-+-.-.... ..+++++.++|++..++++..
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 88999998888999999976431111111 267889999999955555553
No 374
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00019 Score=67.05 Aligned_cols=93 Identities=17% Similarity=0.091 Sum_probs=60.5
Q ss_pred CceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCc--cc-----eecccc--------ccCCCCC-Cc
Q 010592 353 YRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGL--IG-----IYHDWC--------EAFSTYP-RT 415 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~--~~-----~~~~~~--------~~~~~~p-~s 415 (506)
.-+.||+|.|+|.+.+.+.. -+....++++++.-++.++.+.+.-. +. ..-+.| ..+-.-+ .-
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 35699999999998776652 22233567999998888886655421 10 000000 0111122 89
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
||.||+. .....+.+++--.|+|||.++|-
T Consensus 163 YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 163 YDAIHVG---------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cceEEEc---------cCccccHHHHHHhhccCCeEEEe
Confidence 9999993 33445778888999999999993
No 375
>PLN02823 spermine synthase
Probab=97.41 E-value=0.003 Score=64.61 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=65.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccc------eecccccc----CCCCCCceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIG------IYHDWCEA----FSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~------~~~~~~~~----~~~~p~s~Dlv~ 420 (506)
..++||-||+|.|+.+..+.+.. .+.+|+.+|++++++++|++.- ... .+.-..++ +...++.||+|.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 46789999999999999887743 2367999999999999998752 110 00001111 112347899999
Q ss_pred Ecccccccc-CcC-C--HHHHHH-HHhhhccCCcEEEEE
Q 010592 421 AHGLFSLYK-DKC-N--IEDILL-EMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~-~~~-~--~~~~l~-e~~RvLrPgG~~ii~ 454 (506)
++. +.... ..+ . -...+. .+.+.|+|||.+++.
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 863 22100 001 0 134666 789999999999874
No 376
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0022 Score=61.34 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=90.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCC-----CCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST-----YPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~-----~p~s~Dlv~~~~~~~ 426 (506)
.+.+||+|+-||||.--|.++|. -.|.++|...+.|.--..... +-.+. -..+-. +..-.|++.|.-.|-
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E--~tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLE--RTNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEe--cCChhhCCHHHcccCCCeEEEEeehh
Confidence 67899999999999999999874 689999998776654433321 01110 011111 224678999966665
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEE-------------------EeC---hhhHHHHHHHHhcCCceEEEeecC--CC
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIII-------------------RDE---VDEIIKVKKIVGGMRWDTKMVDHE--DG 482 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii-------------------~d~---~~~~~~~~~~~~~~~w~~~~~~~~--~~ 482 (506)
.+..+|-.+..+|+|+|-++. +|+ ...+.++.+.++..+|.+.-...- .|
T Consensus 156 ------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G 229 (245)
T COG1189 156 ------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKG 229 (245)
T ss_pred ------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccC
Confidence 566799999999999998887 233 237788999999999997743322 22
Q ss_pred -CCCCeEEEEEEec
Q 010592 483 -PLVPEKILVAVKQ 495 (506)
Q Consensus 483 -~~~~~~~l~~~k~ 495 (506)
..+.|+++..+|+
T Consensus 230 ~~GNiE~l~~~~k~ 243 (245)
T COG1189 230 GKGNIEFLLLLKKS 243 (245)
T ss_pred CCCcEeeeeeeecc
Confidence 2235777766664
No 377
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.38 E-value=0.0012 Score=64.50 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=83.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc----cccCCC------CC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW----CEAFST------YP 413 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~----~~~~~~------~p 413 (506)
+...+.++||++|+++|.-+.+|+..-.....|+.+|..+++..+|.+- |+...+... .+-++. ++
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 3444577899999999998888875311235799999998888876542 442211111 111222 23
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEe---------Ch-----hhH--------HHHHHHHhcCC
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD---------EV-----DEI--------IKVKKIVGGMR 471 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d---------~~-----~~~--------~~~~~~~~~~~ 471 (506)
++||+|+.+.- +..-...+....+.|||||.+++-+ +. ... +-.+.+...-+
T Consensus 155 ~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~ 228 (247)
T PLN02589 155 GTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPR 228 (247)
T ss_pred CcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 69999998322 2233567777789999999988722 10 111 11223466778
Q ss_pred ceEEEeecCCCCCCCeEEEEEEec
Q 010592 472 WDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 472 w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++.+....|| +++++|.
T Consensus 229 ~~~~llPigDG------l~l~~k~ 246 (247)
T PLN02589 229 IEICMLPVGDG------ITLCRRI 246 (247)
T ss_pred EEEEEEEeCCc------cEEEEEe
Confidence 88887766654 5666653
No 378
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.34 E-value=0.0011 Score=68.63 Aligned_cols=113 Identities=15% Similarity=0.058 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC-
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM- 160 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l- 160 (506)
.+.+++.+.+.+... +.+|||+|||+|.++..|++. .++++|+++.++..+. +.+...++ ++.+...|...+
T Consensus 183 ~~~l~~~v~~~~~~~---~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGS---KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcC---CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHH
Confidence 356666666666321 126999999999999998875 5999999987765444 44444555 356666676432
Q ss_pred C-------C---C-----CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 P-------Y---A-----SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p-------~---~-----~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ + . ...||+|+....- ..-...+++.+ ++|++.++++..|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR---~G~~~~~l~~l---~~~~~ivYvsC~p~ 314 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPPR---AGLDPDTCKLV---QAYERILYISCNPE 314 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCCC---CCCcHHHHHHH---HcCCcEEEEEcCHH
Confidence 1 1 0 1137998875421 11113444544 34899999997665
No 379
>PRK00536 speE spermidine synthase; Provisional
Probab=97.33 E-value=0.0012 Score=65.06 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=70.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c----cceeccccccCCCC-CCc
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEAFSTY-PRT 415 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~----~~~~~~~~~~~~~~-p~s 415 (506)
...-...++||=+|.|-|+.++.+.+.+ .+|+-+|+.+++++.+++-- + ...+ . .+..- .++
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~-~---~~~~~~~~~ 139 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHA-K---QLLDLDIKK 139 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEe-e---hhhhccCCc
Confidence 3445567899999999999999999976 38999999999999887721 1 0011 0 11112 378
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
||+|.+++.|+ +.....+.|.|+|||.++..-.
T Consensus 140 fDVIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 140 YDLIICLQEPD--------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCEEEEcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence 99999976544 4577889999999999999543
No 380
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.29 E-value=0.00048 Score=69.87 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=69.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh---------C--CcEEEecCccchHHHHHHHHHHc--CCCeEE
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---------R--NVIAMSFAPRDSHEAQVQFALER--GVPAVI 152 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---------~--~v~~vdis~~di~~~~~~~a~~~--~~~~~~ 152 (506)
....+.+.+++.. ..+.+|||.+||+|.|...+.+ . .+.|+|+++....-+..+..... .....+
T Consensus 32 ~~i~~l~~~~~~~--~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNP--KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhc--cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 4455667777733 3345899999999999877765 1 47788887655544444433321 111235
Q ss_pred EEeccccCCC-C-CCCeeEEEEcCccccc--CC-----C------------h-HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 153 GVLGTIKMPY-A-SRAFDMAHCSRCLIPW--GA-----N------------D-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 153 ~~~d~~~lp~-~-~~sfDlV~~~~~l~~~--~~-----~------------~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...|....+. . ...||+|+++..+... .. + . ..++..+.+.|++||++.+..|.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 5556543332 2 5789999997544322 00 0 0 26889999999999999888764
No 381
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0036 Score=62.37 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=70.4
Q ss_pred HHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc---------CCCeEEEEe
Q 010592 90 DQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER---------GVPAVIGVL 155 (506)
Q Consensus 90 ~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~---------~~~~~~~~~ 155 (506)
.+++..++ ...+..++||-||-|.|..++.+++. .++.+||.+.. ++.+++. ...+.+...
T Consensus 63 hEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~V-----i~~ar~~l~~~~~~~~dpRv~i~i~ 137 (282)
T COG0421 63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAV-----IELARKYLPEPSGGADDPRVEIIID 137 (282)
T ss_pred HHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHH-----HHHHHHhccCcccccCCCceEEEec
Confidence 34444443 22333469999999999999999987 58888887643 3444432 133455555
Q ss_pred ccccC-CCCCCCeeEEEEcCcccccCC----ChHHHHHHHHHhcCCCeEEEEEc
Q 010592 156 GTIKM-PYASRAFDMAHCSRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~l-p~~~~sfDlV~~~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|..+. .-...+||+|++-.. -+..+ ....+++.+.+.|+++|.++...
T Consensus 138 Dg~~~v~~~~~~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 138 DGVEFLRDCEEKFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cHHHHHHhCCCcCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 55332 222348999998432 22111 01689999999999999999873
No 382
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.25 E-value=0.0011 Score=64.73 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=79.6
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc----ceeccccc-cCC-CCCCce
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYHDWCE-AFS-TYPRTY 416 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~----~~~~~~~~-~~~-~~p~s~ 416 (506)
.+.-.+..+||+.|.|.|.++.+|+..-.....|...|..++..+.|.+. |+. ....|.|+ .|+ ..++.|
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 45555667899999999999999985311225788999999999888764 442 23445663 342 234889
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhc-cCCcEEEEEe-ChhhHHHHHHHHhcCCceE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRIL-RPEGAIIIRD-EVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvL-rPgG~~ii~d-~~~~~~~~~~~~~~~~w~~ 474 (506)
|.|+. +-.++-.+|..+.++| ||||.+.+-- .++.+.++-.-+++.+|.-
T Consensus 115 DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 115 DAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred cEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 99998 5666667999999999 9999998854 4444444555577778863
No 383
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.25 E-value=0.0016 Score=64.93 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=80.9
Q ss_pred CCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc--Cccceecc-ccccCC--CCC-CceeEEEEccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER--GLIGIYHD-WCEAFS--TYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r--g~~~~~~~-~~~~~~--~~p-~s~Dlv~~~~~ 424 (506)
.-++|||+|||+|...-+..+. + ....++.+|.|+.|++++..= ........ |-..+- ..+ ...|||.++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 4568999999999866555441 1 246799999999999976542 21111111 111111 012 34499999999
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEe
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~ 477 (506)
|+-+.. .....++..+.+-+.+ .|||-++- ..+.++++.+...++.+...
T Consensus 112 L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 112 LNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred hhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECC
Confidence 997776 5566788888777766 88886653 27788888888888877644
No 384
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.23 E-value=0.0024 Score=60.63 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=78.2
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCc----ccHHHHHhc-CccceeccccccCCC-CC---CceeEEE
Q 010592 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK----NTLGVIYER-GLIGIYHDWCEAFST-YP---RTYDLIH 420 (506)
Q Consensus 350 ~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~----~~l~~~~~r-g~~~~~~~~~~~~~~-~p---~s~Dlv~ 420 (506)
..+..+||-+|+.+|+...++.+--....-|.+++.|+ +.+.+|..| .+++++.| ...|. |. ..+|+|+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D--Ar~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED--ARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES---TTSGGGGTTTS--EEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc--CCChHHhhcccccccEEE
Confidence 34456899999999999999987422224688999998 567789998 45667644 22222 22 7999999
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEE------eC----hhhHHHHHHHHhcCCceEE-EeecC
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR------DE----VDEIIKVKKIVGGMRWDTK-MVDHE 480 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~------d~----~~~~~~~~~~~~~~~w~~~-~~~~~ 480 (506)
++ ..++.+.+-++..+..-||+||.++|. |. ..+...-.+.+++.++++. .++.+
T Consensus 149 ~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le 214 (229)
T PF01269_consen 149 QD-----VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE 214 (229)
T ss_dssp EE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T
T ss_pred ec-----CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC
Confidence 82 123445567888888999999999984 22 2233333344566677754 44444
No 385
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.22 E-value=0.0014 Score=68.09 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC-
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM- 160 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~-~~~~~~~d~~~l- 160 (506)
.+.+++.+.+.+... ..+|||++||+|.++..|++. .++++|+++.++..+. +.+...++ ++.+...|+...
T Consensus 192 ~e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 192 NEKMLEWALDATKGS---KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHH
Confidence 355666666665321 236999999999999988875 5999999987765444 44444555 466777776431
Q ss_pred C-CC--------------CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 P-YA--------------SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p-~~--------------~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +. ...||+|+...-. ..-...+++.+. +|++.++++..|.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G~~~~~l~~l~---~~~~ivyvSC~p~ 323 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AGLDDETLKLVQ---AYERILYISCNPE 323 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCC---CCCcHHHHHHHH---ccCCEEEEEeCHH
Confidence 1 10 1258999985432 111134444444 4789999987654
No 386
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.22 E-value=0.0018 Score=64.61 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEE--Eecc-
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIG--VLGT- 157 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~--~~d~- 157 (506)
...++++...++. -.+.+|||+|||.|.-.-.+.+. .++++|.|+.++.-+. .+... ....... ....
T Consensus 19 ~~vl~El~~r~p~--f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~~~-~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 19 YRVLSELRKRLPD--FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLLRA-GPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHHhCcC--CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHHhc-ccccccchhhhhhh
Confidence 3444566665532 24558999999999655444432 4778888776553222 22221 1111110 0111
Q ss_pred -ccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 158 -IKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 158 -~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
...++. ..|+|+++++|..+.+.. ..+++.+.+.+.+ +|++..|..
T Consensus 95 ~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 95 RDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred cccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 122332 339999999998876522 4666666666655 888887765
No 387
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.21 E-value=0.0036 Score=63.41 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 101 GTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.++.++|||||++|.|+..|.+++ |+++|..+.+- .......+.+...+.....-+.+.+|+|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc---
Confidence 456799999999999999999996 78888644211 112234466666665443222678999999643
Q ss_pred cCCChHHHHHHHHHhcCCC--eEEEEEc
Q 010592 179 WGANDGRYMIEVDRVLRPG--GYWVLSG 204 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPG--G~li~~~ 204 (506)
..|...++-|.++|..| ..+|+..
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 44678888899999877 4666653
No 388
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.21 E-value=0.0019 Score=61.16 Aligned_cols=126 Identities=11% Similarity=0.157 Sum_probs=80.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEccccccccCcC
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~~~~~~~ 432 (506)
-++|||||=....+.. ..+ ..+|++||+.++ +-++. .....--.+|.-+ +.||+|.++.|++......
T Consensus 53 lrlLEVGals~~N~~s--~~~--~fdvt~IDLns~------~~~I~-qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG--WFDVTRIDLNSQ------HPGIL-QQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCccc--ccC--ceeeEEeecCCC------CCCce-eeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 4799999975443222 222 367999999852 11211 1101111244444 8999999999999766333
Q ss_pred CHHHHHHHHhhhccCCcE-----EEEEeChh--------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010592 433 NIEDILLEMDRILRPEGA-----IIIRDEVD--------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~-----~ii~d~~~--------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.=-.-|..+++.|||+|. |+|.-+.+ ..+.++.++.+++++....... . +-.+...+|
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~--~--Kl~y~l~r~ 192 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKS--K--KLAYWLFRK 192 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEec--C--eEEEEEEee
Confidence 334689999999999999 77754433 4578899999999996543222 1 444555555
No 389
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0014 Score=61.73 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~ 157 (506)
..+..-+.+|.+...+- .++.+|+|+|+..|+|+..+++. .|+++|+.|.+.. ..+.+.+.|+
T Consensus 27 SRAa~KL~el~~k~~i~-~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~ 94 (205)
T COG0293 27 SRAAYKLLELNEKFKLF-KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDI 94 (205)
T ss_pred chHHHHHHHHHHhcCee-cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeec
Confidence 33444445555554322 34569999999999999998876 2899999876442 2256666665
Q ss_pred ccCC--------CCCCCeeEEEEcCcc---cccCCCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010592 158 IKMP--------YASRAFDMAHCSRCL---IPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~lp--------~~~~sfDlV~~~~~l---~~~~~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
..-+ +....+|+|+|-..- -++..|. ..++.-+..+|+|||.|++..
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 4322 334457999973321 1111111 255667788999999999864
No 390
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.18 E-value=0.0021 Score=66.75 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=88.5
Q ss_pred hhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecc
Q 010592 329 EDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHD 404 (506)
Q Consensus 329 ~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~ 404 (506)
.++-.|-.+-.....+-..+. .++|||+=|=||+|+.+.+..|. -.|+.+|.|...|+.|.+. |+...-|.
T Consensus 197 ~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~ 271 (393)
T COG1092 197 LKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHR 271 (393)
T ss_pred ccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCcccee
Confidence 344444333333333333343 46799999999999999988762 4899999999999988875 33222222
Q ss_pred c-cc-cCCC---CC---CceeEEEEcc-ccccccCcC-----CHHHHHHHHhhhccCCcEEEEEeChh------hHHHHH
Q 010592 405 W-CE-AFST---YP---RTYDLIHAHG-LFSLYKDKC-----NIEDILLEMDRILRPEGAIIIRDEVD------EIIKVK 464 (506)
Q Consensus 405 ~-~~-~~~~---~p---~s~Dlv~~~~-~~~~~~~~~-----~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~ 464 (506)
| ++ .|.. +. .+||+|..+- .|...+... +...++....++|+|||.+++..... ..+.|.
T Consensus 272 ~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 272 FIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred eehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 2 22 2222 22 4999999831 222111100 22368899999999999999965332 445555
Q ss_pred HHHhcCCceEEEee
Q 010592 465 KIVGGMRWDTKMVD 478 (506)
Q Consensus 465 ~~~~~~~w~~~~~~ 478 (506)
.-+..++-...++.
T Consensus 352 ~a~~~~~~~~~~~~ 365 (393)
T COG1092 352 RAAAAAGRRAQEIE 365 (393)
T ss_pred HHHHhcCCcEEEee
Confidence 55556655545543
No 391
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.18 E-value=0.0031 Score=64.02 Aligned_cols=116 Identities=9% Similarity=0.061 Sum_probs=71.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcCCCeEE--EEe
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVL 155 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~di~~~~~~~a~~~~~~~~~--~~~ 155 (506)
+.....|+..++ ++..++|+|||.|.=+..|++. .+.++|||...+..+..+........+.+ ..+
T Consensus 64 ~~~~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~g 139 (319)
T TIGR03439 64 KKHSSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEe
Confidence 344456666662 3448999999999766555432 37889998877766665555233222333 444
Q ss_pred cccc----CCC--CCCCeeEEEEcC-cccccCCCh-HHHHHHHHH-hcCCCeEEEEEcC
Q 010592 156 GTIK----MPY--ASRAFDMAHCSR-CLIPWGAND-GRYMIEVDR-VLRPGGYWVLSGP 205 (506)
Q Consensus 156 d~~~----lp~--~~~sfDlV~~~~-~l~~~~~~~-~~~l~e~~r-vLkPGG~li~~~p 205 (506)
|..+ ++- ......+|+... ++-.+.++. ..+|+++.+ .|+|||.|++...
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred cHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 4322 321 123467777643 333433322 588999999 9999999999653
No 392
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.18 E-value=0.00056 Score=68.78 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~Dlv~~~~ 423 (506)
....+|||+|||+|.++..|++.+ ..|+++|.+++|++.+.++ ++...+.-.++++...+ ..||.|.++.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaNl 109 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANV 109 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEecC
Confidence 345689999999999999998865 4799999999999988775 22222333345554445 6789988843
No 393
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0036 Score=66.14 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP 161 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp 161 (506)
.+.+++...+.+...+ +.+|||+=||.|.|+..|+++ .|+++++++..+.. +.+.|+.+++. +.+..++++...
T Consensus 278 ~ekl~~~a~~~~~~~~--~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~-A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 278 AEKLYETALEWLELAG--GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEA-AQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHhhcC--CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHH-HHHHHHHcCCCcEEEEeCCHHHHh
Confidence 3666677777775433 348999999999999999976 69999999977744 44555555555 666667766554
Q ss_pred C---CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 Y---ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~---~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. ....||.|+...-- ..-...+++.+.+ ++|-..+++|.+|.
T Consensus 355 ~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~~-~~p~~IvYVSCNP~ 399 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPR---AGADREVLKQLAK-LKPKRIVYVSCNPA 399 (432)
T ss_pred hhccccCCCCEEEECCCC---CCCCHHHHHHHHh-cCCCcEEEEeCCHH
Confidence 2 23578999875422 1111345555544 68888999998776
No 394
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.15 E-value=0.0016 Score=66.05 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=70.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----Cccceeccc-cc---c-CCC---CCC
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDW-CE---A-FST---YPR 414 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~-~~---~-~~~---~p~ 414 (506)
+..+...+|||||||+|..+..|..+- ....++++|.++.+++.|.+- ++...+.-. +. . +.. ...
T Consensus 110 ~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 110 IPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCC
Confidence 344456789999999998888876542 134799999999999987753 121111110 11 1 111 136
Q ss_pred ceeEEEEccccccccCcCC--HHHHHHH----------------HhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010592 415 TYDLIHAHGLFSLYKDKCN--IEDILLE----------------MDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~~~~--~~~~l~e----------------~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
.||+|.|+-=|........ -..-... ....+-+||.+-+...+ +.+-..++++.+|=+.+
T Consensus 189 ~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m--i~eS~~~~~~~gwftsm 266 (321)
T PRK11727 189 RFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM--IEESKAFAKQVLWFTSL 266 (321)
T ss_pred ceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh--hHHHHHHHhhCcEEEEE
Confidence 8999999755542211100 0011111 22445688887775544 33335556666665444
Q ss_pred e
Q 010592 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 267 v 267 (321)
T PRK11727 267 V 267 (321)
T ss_pred e
Confidence 3
No 395
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.12 E-value=0.0019 Score=67.10 Aligned_cols=110 Identities=11% Similarity=0.143 Sum_probs=70.0
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C--------------
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y-------------- 412 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~-------------- 412 (506)
+|||++||+|.|+.+|++.. ..|+++|.++.|++.|.+. |+ ..+...+.++.. +
T Consensus 209 ~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred eEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 59999999999999888753 4799999999999988764 22 122222222211 1
Q ss_pred -CCceeEEEEccccccccCcCCH-HHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeec
Q 010592 413 -PRTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 413 -p~s~Dlv~~~~~~~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~ 479 (506)
...||+|..+ ++|..+ +.++..+ ++|++.++|+.... ....++.+.+ +|++..+..
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v~~ 343 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVERFAL 343 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEEEE
Confidence 1248999981 123232 3344443 45899999986654 3455666653 788765433
No 396
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.10 E-value=0.0013 Score=68.08 Aligned_cols=110 Identities=11% Similarity=0.098 Sum_probs=69.6
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCC----------C---C-----
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFST----------Y---P----- 413 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~----------~---p----- 413 (506)
.|||++||+|.|+..|++.. ..|+++|.+++|++.|.+..- +..+...+.++.. + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 49999999999999888763 379999999999998887521 1112222222211 1 0
Q ss_pred -CceeEEEEccccccccCcCCH-HHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010592 414 -RTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 -~s~Dlv~~~~~~~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
..||+|..+ +++..+ +.++.- +++|++.++|+-... ....+..+.++ |++..+.
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~ 333 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVERFA 333 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEE
Confidence 127888871 123332 344444 455999999976554 55667766643 8866443
No 397
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=8.3e-05 Score=65.95 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=48.9
Q ss_pred EEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCCCcc
Q 010592 153 GVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINWK 210 (506)
Q Consensus 153 ~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~~ 210 (506)
.+......+|.++|.|+|++.++++|+.-+. ..++++++|+|||||+|-+++|...+.
T Consensus 34 vc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 34 VCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 3334467789999999999999999987655 689999999999999999999887653
No 398
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.08 E-value=0.004 Score=58.19 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=60.5
Q ss_pred EEEEECCCCChhHHHHhh----CCcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010592 105 TALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~----~~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+++|||+|.|.-+..|+= ..++.+|-...-. .-....+.+-+++ +......++. +....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 799999999965555542 2577888755322 1112234444665 5555555666 5557799999996532
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEE
Q 010592 180 GANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
....++.-+...|++||.+++.
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 2467888999999999998875
No 399
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.08 E-value=0.002 Score=60.59 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=63.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCC--C-CceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STY--P-RTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~--p-~s~Dlv~~ 421 (506)
..+|||++||+|.++..++.++. ..|+.+|.++.+++.+.+. ++...+..++.+. ..+ . ..||+|..
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 35799999999999999999874 3799999999888877653 2211122222332 112 1 24899998
Q ss_pred ccccccccCcCCHHHHHHHH--hhhccCCcEEEEEeCh
Q 010592 422 HGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~ 457 (506)
.-=|.. ...+.+|.-+ ..+|+++|.+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 655541 1233333333 4589999999986543
No 400
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.06 E-value=0.0093 Score=60.45 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=64.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEcccccccc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~Dlv~~~~~~~~~~ 429 (506)
+..++||+||++|+|+..|.++| +.|+++|.. .|-+...+-+.+. |.-...|... ++.+|+|.|+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g-~l~~~L~~~~~V~--h~~~d~fr~~p~~~~vDwvVcDm------ 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNG-PMAQSLMDTGQVE--HLRADGFKFRPPRKNVDWLVCDM------ 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC---CEEEEEech-hcCHhhhCCCCEE--EEeccCcccCCCCCCCCEEEEec------
Confidence 45689999999999999999987 589999977 5666555554322 2222334444 47899999922
Q ss_pred CcCCHHHHHHHHhhhccCC--cEEEEE
Q 010592 430 DKCNIEDILLEMDRILRPE--GAIIIR 454 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPg--G~~ii~ 454 (506)
.+.+..++.=|.+.|..| ..+|++
T Consensus 279 -ve~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 279 -VEKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -ccCHHHHHHHHHHHHhcCcccEEEEE
Confidence 246778888888899777 466664
No 401
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.024 Score=52.08 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=78.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cC--ccceeccccccCCCCCCceeEEEEccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RG--LIGIYHDWCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg--~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~ 426 (506)
...+|++|||+|-....|++.-....-.+++|+++..++.-.+ .+ +..+..|....+ -+++.|++.-+--+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEECCCcC
Confidence 5569999999999999998753333557888999887775333 22 122222222222 238999887654443
Q ss_pred cccCcCC------------------HHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010592 427 LYKDKCN------------------IEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 427 ~~~~~~~------------------~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
-....+. +..+|..+.-+|-|.|.+++--... ...+|-+++++-+|.+.+..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 2222221 3356777888889999999843221 23456668899999877543
No 402
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.02 E-value=0.0031 Score=58.70 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=72.2
Q ss_pred cCCCCCceEEeecCcccHHH--HHHHhCCCe------EEEEeecCCCcccHHHHHhc----Cccceeccc---cccCCCC
Q 010592 348 LDSGRYRNIMDMNAGFGGFA--AAIQSSKLW------VMNVVPTLADKNTLGVIYER----GLIGIYHDW---CEAFSTY 412 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~--~~l~~~~~~------~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~---~~~~~~~ 412 (506)
..+.....|||-=||+|++. +++...+.. ...+.+.|.+++++..|.+. |+...++.. ...++..
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP 103 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence 34445568999999999986 233333321 22478999999999877664 332222222 2334434
Q ss_pred CCceeEEEEccccccccCcCCH--------HHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEe
Q 010592 413 PRTYDLIHAHGLFSLYKDKCNI--------EDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 413 p~s~Dlv~~~~~~~~~~~~~~~--------~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
++++|+|.++-=+- .+... ..++.++.|+|+|...+++.... .+.+.+....|+....
T Consensus 104 ~~~~d~IvtnPPyG---~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~----~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 104 DGSVDAIVTNPPYG---RRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR----ELEKALGLKGWRKRKL 169 (179)
T ss_dssp TSBSCEEEEE--ST---TSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC----CHHHHHTSTTSEEEEE
T ss_pred cCCCCEEEECcchh---hhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHhcchhhceEEE
Confidence 48999999954433 22221 25789999999995566666554 3455666668875543
No 403
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.99 E-value=0.0036 Score=68.28 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.0
Q ss_pred CCEEEEECCCCChhHHHHhh
Q 010592 103 VRTALDTGCGVASWGAYLWS 122 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~ 122 (506)
..+|||.|||+|.+...++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~ 51 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLK 51 (524)
T ss_pred ceEEEeCCCCccHHHHHHHH
Confidence 45899999999999887765
No 404
>PRK00536 speE spermidine synthase; Provisional
Probab=96.98 E-value=0.0053 Score=60.51 Aligned_cols=90 Identities=10% Similarity=0.071 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHH---------cCCCeEEEEeccccCCCCCCCeeE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALE---------RGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~---------~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
+.+++||=||.|.|..++.+++. .|+.+||++..+ +.+++ ..+++.+.. ... .-..++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv-----~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKIL-----DSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHH-----HHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCE
Confidence 45679999999999999999987 588888876443 33333 122333332 111 112368999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++-.. ....+.+.+.|.|+|||.++.-.
T Consensus 143 IIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 143 IICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 998532 23678899999999999999854
No 405
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.98 E-value=0.00032 Score=65.22 Aligned_cols=88 Identities=20% Similarity=0.392 Sum_probs=67.4
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
.++||+|+|.|.....|+.. .-.|.+.++|..|...-..++. ++. ..|.+ -+=.||+|.|-+++ +|
T Consensus 114 ~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~-~ew~~----t~~k~dli~clNlL----DR 181 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTE-IEWLQ----TDVKLDLILCLNLL----DR 181 (288)
T ss_pred eeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeee-hhhhh----cCceeehHHHHHHH----Hh
Confidence 57999999999998888652 2358888999899988887764 222 22332 12359999995555 58
Q ss_pred C-CHHHHHHHHhhhccC-CcEEEE
Q 010592 432 C-NIEDILLEMDRILRP-EGAIII 453 (506)
Q Consensus 432 ~-~~~~~l~e~~RvLrP-gG~~ii 453 (506)
| ++-.+|..|+-||+| .|.+|+
T Consensus 182 c~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEE
Confidence 8 677899999999999 999988
No 406
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0026 Score=62.26 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.|.+.+.... +.+|||||+|.|.++..|+++ .|+++++++..+..-....+ ...+..+..+|+...+++
T Consensus 16 ~~v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 344677777775444 459999999999999999998 58999997743322211111 234567777888877776
Q ss_pred CC-CeeEEEEcCc
Q 010592 164 SR-AFDMAHCSRC 175 (506)
Q Consensus 164 ~~-sfDlV~~~~~ 175 (506)
+- .++.|+++.-
T Consensus 92 ~l~~~~~vVaNlP 104 (259)
T COG0030 92 SLAQPYKVVANLP 104 (259)
T ss_pred hhcCCCEEEEcCC
Confidence 53 6889999864
No 407
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.015 Score=55.77 Aligned_cols=149 Identities=19% Similarity=0.179 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEE-Eeccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~-~~d~~ 158 (506)
+|+..+...+...- + ..+++.+||||+.||.|+..+.+++ |.++|+.-.-++ ...+....+... ..++.
T Consensus 62 RG~~KL~~ale~F~-l-~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~-----~kLR~d~rV~~~E~tN~r 134 (245)
T COG1189 62 RGGLKLEKALEEFE-L-DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH-----WKLRNDPRVIVLERTNVR 134 (245)
T ss_pred cHHHHHHHHHHhcC-c-CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC-----HhHhcCCcEEEEecCChh
Confidence 55566654444432 2 2456799999999999999999984 888888654332 223333333322 22333
Q ss_pred cCC---CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccc----hhcccCChHHhHHHHHHHH
Q 010592 159 KMP---YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTN----YKAWQRPKEELQEEQRKIE 231 (506)
Q Consensus 159 ~lp---~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~----~~~~~~~~~~~~~~~~~l~ 231 (506)
.+. +. +..|+|+|--+++. ...+|..+..+|+|+|.++.-.-|.--..+ .....+...........+.
T Consensus 135 ~l~~~~~~-~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 135 YLTPEDFT-EKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred hCCHHHcc-cCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 332 22 36889999776644 367899999999999999886644311111 1112334444445566677
Q ss_pred HHHHhcceeecc
Q 010592 232 EIANLLCWEKKS 243 (506)
Q Consensus 232 ~l~~~~~w~~~~ 243 (506)
+++....|....
T Consensus 210 ~~~~~~g~~~~g 221 (245)
T COG1189 210 NFAKELGFQVKG 221 (245)
T ss_pred HHHhhcCcEEee
Confidence 777777776653
No 408
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.93 E-value=0.014 Score=55.70 Aligned_cols=142 Identities=14% Similarity=0.185 Sum_probs=89.1
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHH--HHhCCCeEEEEeecCCCcccH---HHHHhc-Cccc
Q 010592 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAA--IQSSKLWVMNVVPTLADKNTL---GVIYER-GLIG 400 (506)
Q Consensus 327 f~~d~~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~--l~~~~~~~~~v~~~d~~~~~l---~~~~~r-g~~~ 400 (506)
..+..+.|.+++-.-..+...+... ..+++|||.|.|-=+.- +.... .+|+-+|....-. +.+... |+ .
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~---~~vtLles~~Kk~~FL~~~~~eL~L-~ 117 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPD---LKVTLLESLGKKIAFLREVKKELGL-E 117 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccC---CcEEEEccCchHHHHHHHHHHHhCC-C
Confidence 3445688988887766665544332 46799999999963333 33333 4588888664433 333333 54 2
Q ss_pred eeccccccCCCCC--Cc-eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE---EeChhhHHHHHHHHhcCCceE
Q 010592 401 IYHDWCEAFSTYP--RT-YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII---RDEVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 401 ~~~~~~~~~~~~p--~s-~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii---~d~~~~~~~~~~~~~~~~w~~ 474 (506)
+++-++.+.+.+. .. ||+|.| . ..+++...+.=....||+||.++. .-..++..+.+......++.+
T Consensus 118 nv~i~~~RaE~~~~~~~~~D~vts----R---Ava~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 118 NVEIVHGRAEEFGQEKKQYDVVTS----R---AVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQV 190 (215)
T ss_pred CeEEehhhHhhcccccccCcEEEe----e---hccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcE
Confidence 2333345555544 23 999998 2 233666666667789999998754 344456777888888888887
Q ss_pred EEeecC
Q 010592 475 KMVDHE 480 (506)
Q Consensus 475 ~~~~~~ 480 (506)
..+..-
T Consensus 191 ~~~~~~ 196 (215)
T COG0357 191 EKVFSL 196 (215)
T ss_pred EEEEEe
Confidence 755443
No 409
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.91 E-value=0.002 Score=60.28 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=67.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc-c
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-K 159 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~-~ 159 (506)
+..-+.+.+.|....-.+.++||+-||+|.++...+.+| ++.+|.++.-+. ...+....-+.. ......|.. .
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-IIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-HHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-HHHHHHHHhCCCcceeeeccCHHHH
Confidence 333344555553211245699999999999999998885 788888764332 222333333332 455555642 2
Q ss_pred CC---CCCCCeeEEEEcCcccccCCCh--HHHHHHHH--HhcCCCeEEEEEcC
Q 010592 160 MP---YASRAFDMAHCSRCLIPWGAND--GRYMIEVD--RVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp---~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~--rvLkPGG~li~~~p 205 (506)
++ .....||+|+.-.-+ .... ..++..+. .+|+++|.+++..+
T Consensus 105 l~~~~~~~~~fDiIflDPPY---~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPY---AKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHCTS-EEEEEE--ST---TSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHhhcccCCCceEEEECCCc---ccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 21 246789999997643 3332 55677766 78999999999764
No 410
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.91 E-value=0.002 Score=63.13 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEeccccC-CCCCC-CeeEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM-PYASR-AFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~----~~~~~~~~~~d~~~l-p~~~~-sfDlV~ 171 (506)
.+++||=||-|.|..++.+.+. .++++|+++..+.-+..-+... ...+..+...|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4569999999999999999876 4888999775443333222221 134577777776432 22233 899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010592 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.-..- +.... ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 74321 21111 1589999999999999999865
No 411
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.90 E-value=0.0042 Score=66.37 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~Dlv~ 420 (506)
......+||||+||+|+=+.+|++.-.-...|++.|.++..+....++ |+ ..+.-.+.+ +. .++..||.|.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEE
Confidence 334556899999999997777765311113799999998888766543 44 222111222 21 3457899999
Q ss_pred ----Ecc--cccccc----Cc--CCH-------HHHHHHHhhhccCCcEEEEEe-C---hhhHHHHHHHHhc
Q 010592 421 ----AHG--LFSLYK----DK--CNI-------EDILLEMDRILRPEGAIIIRD-E---VDEIIKVKKIVGG 469 (506)
Q Consensus 421 ----~~~--~~~~~~----~~--~~~-------~~~l~e~~RvLrPgG~~ii~d-~---~~~~~~~~~~~~~ 469 (506)
|++ +|..-. .+ .++ ..+|....+.|||||+|+-+. + .+-.+.|+.+++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 432 222100 00 001 258899999999999998853 2 2333444555544
No 412
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.88 E-value=0.0024 Score=63.51 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=63.7
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--C--c---cceeccccccCCCCCCc
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--G--L---IGIYHDWCEAFSTYPRT 415 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r--g--~---~~~~~~~~~~~~~~p~s 415 (506)
.++..-..-..+.|||+|||.|.+...-+..| ...|.++++| +|.+.|..- + + |.++-.--|++ .+|..
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-eLPEk 243 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-ELPEK 243 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-cCchh
Confidence 34443333346789999999999766555555 3579999998 899877642 1 1 11211112444 27899
Q ss_pred eeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 416 ~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.|+|.+--.=..+-+ ..+...-.-..|.|+|.|...=
T Consensus 244 ~DviISEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 244 VDVIISEPMGYMLVN-ERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ccEEEeccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence 999998222111111 2233333345599999997654
No 413
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.84 E-value=0.0037 Score=60.75 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=57.3
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCC
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~ 164 (506)
.++.|.+..++.+ +..|||||.|||.++..|.+. .|+++++++.++.+-........ .....+..+|....++|
T Consensus 46 v~~~I~~ka~~k~--tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKP--TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCC--CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4456666665544 449999999999999999987 59999999987755443332111 11245555666555544
Q ss_pred CCeeEEEEcCcc
Q 010592 165 RAFDMAHCSRCL 176 (506)
Q Consensus 165 ~sfDlV~~~~~l 176 (506)
.||.++++.-+
T Consensus 123 -~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 -RFDGCVSNLPY 133 (315)
T ss_pred -ccceeeccCCc
Confidence 59999997543
No 414
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.83 E-value=0.0062 Score=60.67 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCe--EEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.++.|||+|||+|.++...++. +|.+++-|. |. +-+.++...+.+.. ....+.+++..+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA-qyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA-QYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH-HHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4568999999999877776665 477777653 22 22222333333332 3333445666555 479999985433
Q ss_pred cccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.-+..+. -...-.+.+.|||.|.++=+.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 2222211 222334569999999987543
No 415
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.003 Score=55.65 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh---CCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---~~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~ 162 (506)
...+..|-+.... -.+..++|+|||.|-+.....- ..+.++||.|..+ +-..+.+.+-.+.+.+.++++..+-+
T Consensus 34 asM~~~Ih~Tygd--iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~ 110 (185)
T KOG3420|consen 34 ASMLYTIHNTYGD--IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLEL 110 (185)
T ss_pred HHHHHHHHhhhcc--ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhc
Confidence 3333444444432 2355899999999977644332 2588999987433 34445566656677888888888877
Q ss_pred CCCCeeEEEEcCcc
Q 010592 163 ASRAFDMAHCSRCL 176 (506)
Q Consensus 163 ~~~sfDlV~~~~~l 176 (506)
..+.||.++.+.-+
T Consensus 111 ~~g~fDtaviNppF 124 (185)
T KOG3420|consen 111 KGGIFDTAVINPPF 124 (185)
T ss_pred cCCeEeeEEecCCC
Confidence 78999999987654
No 416
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.78 E-value=0.0016 Score=65.36 Aligned_cols=79 Identities=19% Similarity=0.048 Sum_probs=53.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCC----CC---ceeEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTY----PR---TYDLI 419 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~----p~---s~Dlv 419 (506)
+......+++|++||+|+.+.++++.......|+++|.++.|+..|.++-- ...+.....+|..+ +. +||.|
T Consensus 15 L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 15 LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 333444589999999999999999863223689999999999999987621 11122223344432 23 79988
Q ss_pred EEccccc
Q 010592 420 HAHGLFS 426 (506)
Q Consensus 420 ~~~~~~~ 426 (506)
.++...+
T Consensus 95 l~DLGvS 101 (296)
T PRK00050 95 LLDLGVS 101 (296)
T ss_pred EECCCcc
Confidence 8855444
No 417
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.77 E-value=0.0088 Score=62.22 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=70.6
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccC----CCCCCCeeEEEE
Q 010592 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM----PYASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~l----p~~~~sfDlV~~ 172 (506)
+++|||+=|=||.|+.+.+.. .++.||+|..-+..+..++.. +++ +..+.+.|+... .-...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 669999999999999998876 478888877655444443333 343 356787786432 223458999997
Q ss_pred cCcccc------c--CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 SRCLIP------W--GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~------~--~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
-..-.- | ..+-..++..+.++|+|||.+++++...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 321100 0 1111478899999999999999987544
No 418
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.75 E-value=0.0047 Score=55.86 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=77.4
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCCCCC-Cce
Q 010592 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFSTYP-RTY 416 (506)
Q Consensus 343 ~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~~~p-~s~ 416 (506)
++...|.+.+.-.||.+|.|||-|..++.++++.--++++++.+++....-.++-. .|..-+.-..+...+ .-|
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCee
Confidence 34456778888899999999999999999999888899999999888887766531 122211111122234 789
Q ss_pred eEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 417 Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.|.|.-=|....-+ .-..+|.++.--|++||.++--
T Consensus 119 D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 119 DSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 999984333211111 1136889999999999998873
No 419
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0079 Score=59.95 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=70.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccc--cc-----------CCCCC
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC--EA-----------FSTYP 413 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~--~~-----------~~~~p 413 (506)
.+..+..++||=+|-|.|+.++.+.+.+- +-.++.+|+.++.++.+++.- +..+..+ .+ +...+
T Consensus 71 ~~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l--~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 71 LLAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYL--PEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhc--cCcccccCCCceEEEeccHHHHHHhCC
Confidence 34445558999999999999999998652 568888899999999998762 1111100 11 11244
Q ss_pred CceeEEEEccccccccCcCC--HHHHHHHHhhhccCCcEEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+||+|.++..=. ..+-.. -...+....|.|+|+|.++..
T Consensus 148 ~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 6899999832211 111011 157899999999999999997
No 420
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.69 E-value=0.019 Score=54.80 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010592 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
.-.+++.+.+.+ .++++||||.=||+-+..++.. .++++|+.+...... .++.+..+.. +.+.+..+
T Consensus 61 ~g~fl~~li~~~-----~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLIRLL-----NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred HHHHHHHHHHHh-----CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecch
Confidence 344555555555 2348999999888766555543 489999977544333 3333333433 44444443
Q ss_pred c-cC-----CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 158 I-KM-----PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 158 ~-~l-----p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
. .| ..+.++||+++. -++.+.-...+.++.++||+||.+++.
T Consensus 135 ~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 1 11 135789999986 345444468899999999999999985
No 421
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.69 E-value=0.008 Score=61.22 Aligned_cols=115 Identities=14% Similarity=0.061 Sum_probs=81.8
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEE
Q 010592 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGV 154 (506)
Q Consensus 80 ~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~--~~~~~ 154 (506)
+|.++-..--..++++. ..+.+|||+=+|.|.|+..++..+ |.++|++|..+ +-..+.++-+++. +....
T Consensus 170 ~Fsprl~~ER~Rva~~v----~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~ 244 (341)
T COG2520 170 YFSPRLSTERARVAELV----KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPIL 244 (341)
T ss_pred EECCCchHHHHHHHhhh----cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEe
Confidence 44444433334566666 235599999999999999998873 88999998544 4444455545444 44677
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|....+...+.||-|++... .....++..+.+.+++||.+.+-.
T Consensus 245 gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 245 GDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEe
Confidence 788777665588999998652 234678899999999999998864
No 422
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.63 E-value=0.004 Score=59.20 Aligned_cols=118 Identities=10% Similarity=0.135 Sum_probs=60.3
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH---H----HcCC
Q 010592 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA---L----ERGV 148 (506)
Q Consensus 80 ~f~~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a---~----~~~~ 148 (506)
.+++-....+..+.+.+.+.+ ....+|||||.|......+-. ...|+++.+. .+..+.... . ..+.
T Consensus 22 ~YGEi~~~~~~~il~~~~l~~--~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNLTP--DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT--T--T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCTB
T ss_pred ceeecCHHHHHHHHHHhCCCC--CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhhc
Confidence 344444555566667775543 459999999999765554432 3778888764 322222111 1 1122
Q ss_pred ---CeEEEEeccccCCCC---CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEE
Q 010592 149 ---PAVIGVLGTIKMPYA---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 149 ---~~~~~~~d~~~lp~~---~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
++.+..+|..+.++. -..-|+|+++... +.++....|.++..-||+|-+++-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 234444444322211 1347999998754 344446677888888999988764
No 423
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.60 E-value=0.0041 Score=64.89 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=62.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C--CCceeEEEEccccc
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y--PRTYDLIHAHGLFS 426 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~--p~s~Dlv~~~~~~~ 426 (506)
.+|||++||+|.++..++.... +..|+++|.+++.++.+.+. ++. .....+.+... + ...||+|..+- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 4699999999999999875421 34799999999999877653 221 11112222211 1 45799999833 1
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-....+|....+.++|||.++|+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12245667756889999999995
No 424
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.58 E-value=0.018 Score=54.75 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=70.8
Q ss_pred HHHHHHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC----C-cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc
Q 010592 86 DKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (506)
Q Consensus 86 ~~~~~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~----~-v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~ 159 (506)
..+...|..-+. ..-.++.+||-+|.++|....++++- | |.++++|+... +..+..|.+|. ++.-...|+.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr- 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDAR- 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TT-
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCC-
Confidence 334344444432 22344569999999999877777653 4 78999999644 56678888773 4444555653
Q ss_pred CC----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 160 MP----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 160 lp----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.| .--+.+|+|++--. + .+....++.++...||+||.++++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa--Q-p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA--Q-PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S--S-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC--C-hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 22 11348999998532 2 2323678888999999999999974
No 425
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.53 E-value=0.021 Score=57.85 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=80.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhC------CCeEEEEeecCCCcccHHHHHhc----Cccce-e-ccccccCCCC---
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSS------KLWVMNVVPTLADKNTLGVIYER----GLIGI-Y-HDWCEAFSTY--- 412 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~------~~~~~~v~~~d~~~~~l~~~~~r----g~~~~-~-~~~~~~~~~~--- 412 (506)
+......+|+|-+||+|+|..+..+. .....++.++|..+.++.++.-+ |.... . -.....|...
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence 34455668999999999997776541 01237899999999888877543 32111 0 1112223221
Q ss_pred -CCceeEEEEccccccc--cC---------------cCCHH-HHHHHHhhhccCCcEEEEEeChh------hHHHHHHH-
Q 010592 413 -PRTYDLIHAHGLFSLY--KD---------------KCNIE-DILLEMDRILRPEGAIIIRDEVD------EIIKVKKI- 466 (506)
Q Consensus 413 -p~s~Dlv~~~~~~~~~--~~---------------~~~~~-~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~- 466 (506)
...||+|.++-=|... .+ ....+ ..+..+.+.|++||++++--+.. ....+++.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 2589999997666643 10 00111 46778999999999876643322 34567765
Q ss_pred HhcCCceEEEeecC----CCCCCCeEEEEEEec
Q 010592 467 VGGMRWDTKMVDHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 467 ~~~~~w~~~~~~~~----~~~~~~~~~l~~~k~ 495 (506)
++...-+. ++... .+...+-.+|+.+|.
T Consensus 202 l~~~~i~a-VI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 202 LENGYIEA-VISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp HHHEEEEE-EEE--TTSSSSSSS-EEEEEEEES
T ss_pred HhhchhhE-EeecccceecccCcCceEEEEeec
Confidence 44433333 33222 233346677777774
No 426
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.012 Score=54.67 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=63.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010592 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+++|||+|+|+|-.+..-+.. .+.+.|+.|. ...+..-++..+++.+.+...|... .+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 4679999999999766655554 4778888763 3333334455566666665444333 5678999999987632
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 179 WGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+...+++. ..+.|+..|.-++.+.|
T Consensus 155 -~~~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 -HTEADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred -chHHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 222256666 66666666666665533
No 427
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.026 Score=58.38 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=68.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC-----C-cEEEecCccchHHHHHHHHHHcCCCe-EEEEeccccCC--CC-CCCeeE
Q 010592 100 NGTVRTALDTGCGVASWGAYLWSR-----N-VIAMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKMP--YA-SRAFDM 169 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~-----~-v~~vdis~~di~~~~~~~a~~~~~~~-~~~~~d~~~lp--~~-~~sfDl 169 (506)
+.++.+|||+.++.|.=+.+|++. . |+++|+++.-+ +...+....-|+.+ .....|...++ .+ .+.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 345569999999999777777664 2 48999987433 33444555556654 55556665443 22 235999
Q ss_pred EEE----c--Cccc-----ccCCC----------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 170 AHC----S--RCLI-----PWGAN----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~~----~--~~l~-----~~~~~----------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+. + .++. -|... ...+|..+.++|||||.|+.++-..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 994 2 2210 01111 1268999999999999999987544
No 428
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0082 Score=56.62 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=71.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccc-c----cC-CCCC-CceeEEEEcccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC-E----AF-STYP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~-~----~~-~~~p-~s~Dlv~~~~~~ 425 (506)
...|+|+||-+|+++..+++.......|+++|.. .|-.+. |+.....+.. + .+ ..++ ..+|+|.|+.+=
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~-p~~~~~---~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDIL-PMKPIP---GVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECc-ccccCC---CceEEeeeccCccHHHHHHHHcCCCCcceEEecCCC
Confidence 4579999999999988887653322347777765 333222 2211110000 0 00 1133 347999974433
Q ss_pred ccccCcC-------CHHHHHHHH-hhhccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeecC-CCCCCCeEEEE
Q 010592 426 SLYKDKC-------NIEDILLEM-DRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPEKILV 491 (506)
Q Consensus 426 ~~~~~~~-------~~~~~l~e~-~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~ 491 (506)
....++. .+..+..|| .++|+|||.+++.+- .+.+..++.+++.+.=. ... .-+.+.|.+++
T Consensus 122 ~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~----KP~aSR~~S~E~y~v 197 (205)
T COG0293 122 NTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIF----KPKASRKRSREIYLV 197 (205)
T ss_pred CcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEe----cCccccCCCceEEEE
Confidence 2211111 122344444 459999999999653 33555566555554322 221 11224688888
Q ss_pred EEe
Q 010592 492 AVK 494 (506)
Q Consensus 492 ~~k 494 (506)
|.+
T Consensus 198 ~~~ 200 (205)
T COG0293 198 AKG 200 (205)
T ss_pred Eec
Confidence 875
No 429
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.059 Score=50.15 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcC--CCeEEEEeccc
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI 158 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~ 158 (506)
-.+..-+.+.+++....-.+.++||+=+|+|.++...+.++ ++.+|.+.... ....++...-+ ....+...|+.
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~-~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAV-KILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCccceEEEeecHH
Confidence 33455566677774212345699999999999999999984 77788865322 12222233223 34555555654
Q ss_pred c-CCCCCC--CeeEEEEcCcccccCCChHHHHHH--HHHhcCCCeEEEEEcCCC
Q 010592 159 K-MPYASR--AFDMAHCSRCLIPWGANDGRYMIE--VDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 159 ~-lp~~~~--sfDlV~~~~~l~~~~~~~~~~l~e--~~rvLkPGG~li~~~p~~ 207 (506)
. |+-... .||+|+.-.-+..=.-+....+.. -..+|+|+|.+++.....
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2 222222 499999876542100111222222 457899999999975433
No 430
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.01 Score=60.17 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=73.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--eeccc-cccCCCCC-CceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDW-CEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~-~~~~~~~p-~s~Dlv~~~~~ 424 (506)
..+|||==||||+|.-.. +..+.++++.|++..|+.-|... ++-. .+..| ...+| ++ .++|.|.+.-=
T Consensus 198 G~~vlDPFcGTGgiLiEa---gl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~~~~vdaIatDPP 273 (347)
T COG1041 198 GELVLDPFCGTGGILIEA---GLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LRDNSVDAIATDPP 273 (347)
T ss_pred CCEeecCcCCccHHHHhh---hhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CCCCccceEEecCC
Confidence 447999999999985443 33448999999999999876543 1111 11111 12333 45 56999998422
Q ss_pred cc--cccCcCC----HHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010592 425 FS--LYKDKCN----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 425 ~~--~~~~~~~----~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
.- ....... ...+|.++.++||+||++++.-+.....+ +..++|++.
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~----~~~~~f~v~ 326 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE----LEELGFKVL 326 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh----HhhcCceEE
Confidence 21 1122222 35799999999999999999766433333 455667655
No 431
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.34 E-value=0.013 Score=58.43 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=63.7
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC---CeEEEEecccc-CC--CCCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK-MP--YASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~---~~~~~~~d~~~-lp--~~~~sfDlV~~~ 173 (506)
+++|||+=|=||.|+.+.+..| |+.+|.|...+..+..+.+. +++ ...+...|+.. +. -..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4699999999999999877664 78888877666555444443 333 35677777643 21 124689999984
Q ss_pred Cccc-----ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010592 174 RCLI-----PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 174 ~~l~-----~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..-. ....+-..++..+.++|+|||.|++++..
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2211 11111246788899999999999887643
No 432
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.25 E-value=0.012 Score=58.83 Aligned_cols=100 Identities=21% Similarity=0.259 Sum_probs=63.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccCCC-C-----CCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFST-Y-----PRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~~~-~-----p~s~Dlv~~ 421 (506)
.++|||+=|=||+|+.+.+..| ...|+.+|.|...|+.+.+. |+. ..+..++++.-. + .+.||+|.+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999877766 35799999999999988775 331 222233333211 1 269999998
Q ss_pred cc-ccccccCcC----CHHHHHHHHhhhccCCcEEEEEeC
Q 010592 422 HG-LFSLYKDKC----NIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 422 ~~-~~~~~~~~~----~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+- .|. ..+- +...++....++|+|||.|++.-.
T Consensus 202 DPPsF~--k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFA--KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEE--SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 31 222 1111 233578888999999999988543
No 433
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.25 E-value=0.043 Score=48.89 Aligned_cols=97 Identities=15% Similarity=0.043 Sum_probs=56.2
Q ss_pred CCCCEEEEECCCCChhHHHHhh-----C---CcEEEecCccchHHHHHHHHHHcCC----CeEEEEeccccCCCCCCCee
Q 010592 101 GTVRTALDTGCGVASWGAYLWS-----R---NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~-----~---~v~~vdis~~di~~~~~~~a~~~~~----~~~~~~~d~~~lp~~~~sfD 168 (506)
.+...|+|+|||.|+++..|+. . .|+++|.++... +...+.+.+.+. ...+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 3456899999999999999988 4 588888887544 333334433331 1222222222111 145567
Q ss_pred EEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010592 169 MAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 169 lV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++.. |...+. ..+|+.+.+ |+-.+++..|-
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCC
Confidence 77753 445555 456666555 66666655443
No 434
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.24 E-value=0.027 Score=56.97 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=68.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~~~ 431 (506)
.....+|+|.|.|..+..+... ..-+..+-.|.+ ..++.|..-+ .++-|.-+.-|-..| .=|+|+.-.+++++.+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp-~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLP-FVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTDE 252 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHH-HHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCChH
Confidence 4678999999999999998873 322444444443 3333333323 444444444444444 23499999999966633
Q ss_pred CCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 432 CNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+...+|+....-|+|||.++|-|.
T Consensus 253 -dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 -DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -HHHHHHHHHHHhCCCCCEEEEEec
Confidence 678899999999999999999654
No 435
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.22 E-value=0.017 Score=54.30 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=69.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccc-cCC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMP 161 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~-~lp 161 (506)
..+.++.++.+. .++.+||.||-|-|.....+.++. ...++-.| ++-+.+...+-...-++....+--+ -++
T Consensus 88 tpiMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-~V~krmr~~gw~ek~nViil~g~WeDvl~ 163 (271)
T KOG1709|consen 88 TPIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-DVLKRMRDWGWREKENVIILEGRWEDVLN 163 (271)
T ss_pred hHHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-HHHHHHHhcccccccceEEEecchHhhhc
Confidence 445566666663 345689999999999888887763 34455555 3333333322211112222222212 222
Q ss_pred -CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 162 -YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 162 -~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++++.||-|+--. +....++...+.+.+.|+|||+|+|-+-
T Consensus 164 ~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 5788999999743 3233455678889999999999998764
No 436
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.22 E-value=0.012 Score=55.59 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=54.7
Q ss_pred CceEEeecCcccHHHHHHHh--CCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGL 424 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~--~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~Dlv~~~~~ 424 (506)
..+|+||-||.|.|+..+++ ++ ..|+++|..|..++...+- ++-..+...+.+...+ ...||-|.+..
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~---~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKA---KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-S---SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred ceEEEEccCCccHHHHHHhhhcCc---cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 46899999999999999887 43 4699999988777644332 2322221112332222 58999888711
Q ss_pred cccccCcCCHHHHHHHHhhhccCCcEEE
Q 010592 425 FSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
+ ......|.+..+.+|+||.+.
T Consensus 178 ----p--~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 ----P--ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----T--SSGGGGHHHHHHHEEEEEEEE
T ss_pred ----h--HHHHHHHHHHHHHhcCCcEEE
Confidence 1 122348888999999999875
No 437
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.21 E-value=0.061 Score=58.70 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=83.1
Q ss_pred CceEEeecCcccHHHHHHHhCC-------CeEEEEeecCCCcccHHHHHhcC-ccc-----ee--ccccccC---CCCCC
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSK-------LWVMNVVPTLADKNTLGVIYERG-LIG-----IY--HDWCEAF---STYPR 414 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~-------~~~~~v~~~d~~~~~l~~~~~rg-~~~-----~~--~~~~~~~---~~~p~ 414 (506)
..+|||.+||+|.|..++.+.. ....++.+.|.++..+..+...- ..+ +. ...+..+ ....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4589999999999988776421 12478999999999888776541 011 11 0112111 11226
Q ss_pred ceeEEEEccccccccC--------------------------------cCC----------H-HHHHHH-HhhhccCCcE
Q 010592 415 TYDLIHAHGLFSLYKD--------------------------------KCN----------I-EDILLE-MDRILRPEGA 450 (506)
Q Consensus 415 s~Dlv~~~~~~~~~~~--------------------------------~~~----------~-~~~l~e-~~RvLrPgG~ 450 (506)
.||+|.++-=+.-... .+. . ..++.| ..+.|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 8999999654442210 011 1 113445 5899999999
Q ss_pred EEEEeChh-----hHHHHHHH-HhcCCceEEEeecC------CCCCCCeEEEEEEec
Q 010592 451 IIIRDEVD-----EIIKVKKI-VGGMRWDTKMVDHE------DGPLVPEKILVAVKQ 495 (506)
Q Consensus 451 ~ii~d~~~-----~~~~~~~~-~~~~~w~~~~~~~~------~~~~~~~~~l~~~k~ 495 (506)
+.+--+.. .-..+++. ++........ +-+ ++...+..+++.+|.
T Consensus 192 ~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~-~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 192 VSIISPASWLGDKTGENLREYIFNNRLINCIQ-YFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred EEEEEChHHhcCccHHHHHHHHHhCCeeEEEE-ECCccccCcCCCCcceEEEEEECC
Confidence 98854443 34567774 5555555332 222 233345667777764
No 438
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.12 Score=50.63 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=67.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp~ 162 (506)
..|..++...++ .+|||-|.|+|+++.+++.. .+...|+-..-..++..++. +.++ .+.+...|....-|
T Consensus 95 a~I~~~L~i~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr-~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 95 AMILSMLEIRPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR-EHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHhcCCCC--CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH-HhCCCcceEEEEeecccCCc
Confidence 456677755544 49999999999999888775 36777774422222222222 2333 35566667665544
Q ss_pred C--CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 163 A--SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~--~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +..+|.|+.-. +.|-.++-.++.+||.+|.-+++.
T Consensus 172 ~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 172 LIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred cccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEec
Confidence 3 67899998743 224456777788999887544443
No 439
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.05 E-value=0.06 Score=54.75 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=60.7
Q ss_pred ceEEeecCcccHHHHHHH----hCCCeEEEEeecCCCcccHHHHHhcCc----c-ceeccccccC-------CC--CCCc
Q 010592 354 RNIMDMNAGFGGFAAAIQ----SSKLWVMNVVPTLADKNTLGVIYERGL----I-GIYHDWCEAF-------ST--YPRT 415 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~----~~~~~~~~v~~~d~~~~~l~~~~~rg~----~-~~~~~~~~~~-------~~--~p~s 415 (506)
..++|+|||.|.=...|. ..+ .....+|+|+|.++|+.+.++-. . -.++-.|.+| +. .+..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~-~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQK-KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcC-CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 369999999998554443 222 13579999999999998877532 1 1111233333 11 1222
Q ss_pred eeE-EEEccccccccCcCCHHHHHHHHhh-hccCCcEEEE
Q 010592 416 YDL-IHAHGLFSLYKDKCNIEDILLEMDR-ILRPEGAIII 453 (506)
Q Consensus 416 ~Dl-v~~~~~~~~~~~~~~~~~~l~e~~R-vLrPgG~~ii 453 (506)
..+ ++-.+.|.... +......|.+|.+ .|+|||.|+|
T Consensus 157 ~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 157 PTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred ccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 343 34444555322 2234579999999 9999999999
No 440
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.059 Score=54.33 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCCCC-CCCeeEEEE
Q 010592 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPYA-SRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~---~~~~~~d~~~lp~~-~~sfDlV~~ 172 (506)
...+|||+|.|.|.-+.++-+- .++.++.|+ .+.+-.-..+..-... .........+++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 4457999999998655444332 244444444 2222222233222111 01111112345554 446777776
Q ss_pred cCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 173 SRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..-+.|..... ...++.+..++.|||.|++..++.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 55443422111 347888999999999999987654
No 441
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.03 E-value=0.0082 Score=60.25 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHH
Q 010592 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHE 137 (506)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~ 137 (506)
+++++.+.+... ++..+||.+||.|.++..+++. .|+++|.++.++..
T Consensus 7 ll~Evl~~L~~~--pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ 59 (296)
T PRK00050 7 LLDEVVDALAIK--PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAA 59 (296)
T ss_pred cHHHHHHhhCCC--CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHH
Confidence 445566666433 3458999999999999999876 27888887654433
No 442
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.0013 Score=58.46 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=37.0
Q ss_pred CCCCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 410 STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 410 ~~~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++-|+|.|+|.|.+++.|+.- ..-..+++|-+|+|||||+|-|.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 345799999999999997663 34568999999999999999994
No 443
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.98 E-value=0.024 Score=58.95 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=67.1
Q ss_pred CEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEEEcCcc
Q 010592 104 RTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlV~~~~~l 176 (506)
.+|||+.||+|..+..++.+ .|+++|+++.-+. ...+.+..++.. +.+...|+..+- .....||+|..-. +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 48999999999999998875 3789999885443 333344444443 456656654332 2235799998743 2
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+..++..+.+.+++||.+.++.
T Consensus 124 ----Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ----GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ----CCcHHHHHHHHHhcccCCEEEEEe
Confidence 234679999999999999999974
No 444
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.88 E-value=0.008 Score=56.18 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=62.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC---CCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY---PRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~---p~s~Dlv~~ 421 (506)
..+|||+=||+|.++..-+.+|. ..|+-+|.++..+..+.+. ++.....-++.+ +... ...||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 45799999999999998888873 5799999998888876654 222212222222 2222 489999999
Q ss_pred ccccccccCcCC-HHHHHHHHh--hhccCCcEEEEEeCh
Q 010592 422 HGLFSLYKDKCN-IEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~-~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
+-=+. ... ...+|..+. .+|+++|.+|+....
T Consensus 121 DPPY~----~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYA----KGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STT----SCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCcc----cchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 43322 111 355666665 899999999996543
No 445
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.84 E-value=0.042 Score=56.38 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=56.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--------------------CcEEEecCccchHHHHHHHHHHc----CCCeEEE--E
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR--------------------NVIAMSFAPRDSHEAQVQFALER----GVPAVIG--V 154 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--------------------~v~~vdis~~di~~~~~~~a~~~----~~~~~~~--~ 154 (506)
...-+|+|+||..|..+..+... .|.--|+-.+|...-...+.... ..+..+. +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999776655432 13445777777754443332221 0122222 2
Q ss_pred ec-cccCCCCCCCeeEEEEcCcccccCCCh------------------------H---------------HHHHHHHHhc
Q 010592 155 LG-TIKMPYASRAFDMAHCSRCLIPWGAND------------------------G---------------RYMIEVDRVL 194 (506)
Q Consensus 155 ~d-~~~lp~~~~sfDlV~~~~~l~~~~~~~------------------------~---------------~~l~e~~rvL 194 (506)
.. ...--||++|.|+++++.++ ||.... . .+|+-=.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 22 33444789999999999988 553211 0 3455556678
Q ss_pred CCCeEEEEEcC
Q 010592 195 RPGGYWVLSGP 205 (506)
Q Consensus 195 kPGG~li~~~p 205 (506)
+|||.++++..
T Consensus 174 v~GG~mvl~~~ 184 (334)
T PF03492_consen 174 VPGGRMVLTFL 184 (334)
T ss_dssp EEEEEEEEEEE
T ss_pred ccCcEEEEEEe
Confidence 99999999763
No 446
>PRK13699 putative methylase; Provisional
Probab=95.82 E-value=0.26 Score=47.72 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
....|||-=||+|+.+.+-.+.+ -+..++|.++...++|.+|
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHH
Confidence 45579999999999876665544 5788999999999988877
No 447
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.038 Score=54.95 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCCCCC--CCCCEEEEECCCCChhHHHHhhCCc--EEEecCccchHHHH--HHHHHHcC-C----------
Q 010592 86 DKYIDQLASVIPIKN--GTVRTALDTGCGVASWGAYLWSRNV--IAMSFAPRDSHEAQ--VQFALERG-V---------- 148 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~--~~~~~VLDiGCG~G~~~~~L~~~~v--~~vdis~~di~~~~--~~~a~~~~-~---------- 148 (506)
..++++|..+.+... ....+||--|||.|+++..|+..|. .+=++|--|+--.. ++..+..+ .
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s 211 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS 211 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence 667788888886432 2345899999999999999988753 23334333331111 11111110 0
Q ss_pred --------------C-----------eEE--EEecccc---CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCe
Q 010592 149 --------------P-----------AVI--GVLGTIK---MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGG 198 (506)
Q Consensus 149 --------------~-----------~~~--~~~d~~~---lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG 198 (506)
+ ..+ ..+|... .+-..++||+|+..+. +.-..+.-.++..+..+|||||
T Consensus 212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCc
Confidence 0 000 0011111 1112347999997652 2322333688999999999999
Q ss_pred EEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecccc
Q 010592 199 YWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEK 245 (506)
Q Consensus 199 ~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~ 245 (506)
+++=.+|-..+.....+. .....++-..+.+-.+++.++|+.+.+.
T Consensus 291 vWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred EEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEee
Confidence 999888766443322111 1111233345567777888899887765
No 448
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.81 E-value=0.036 Score=57.30 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccC
Q 010592 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKM 160 (506)
Q Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~~l 160 (506)
..+.+++.+.++++.. +. .|||+-||+|.++..|++. .|+++++++..+. .+.+.|..+++. +.+...++.++
T Consensus 181 ~~~~l~~~~~~~l~~~--~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~-~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLS--KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVE-DARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHHHCTT---TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHH-HHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHHHHhhcC--CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHH-HHHHHHHHcCCCcceEEEeeccch
Confidence 3366777778888543 22 7999999999999999987 5999999886664 344455555554 55655444322
Q ss_pred C----------------CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 161 P----------------YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p----------------~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. .....+|+|+.-..-.-. ...++..+. ++.=.+++|..|.
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~~~~---~~~~ivYvSCnP~ 313 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL---DEKVIELIK---KLKRIVYVSCNPA 313 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S---CHHHHHHHH---HSSEEEEEES-HH
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc---hHHHHHHHh---cCCeEEEEECCHH
Confidence 1 123368998764321111 134444443 3455677776544
No 449
>PRK11524 putative methyltransferase; Provisional
Probab=95.79 E-value=0.13 Score=51.42 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=35.6
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.+.....|||-=||+|+-+.+-.+.+ -+..++|++++-.++|.+|
T Consensus 205 ~S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 34456679999999999765554433 4789999999999999999
No 450
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.2 Score=46.95 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH----HHHHhc-CccceeccccccCCC-CC---CceeEE
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL----GVIYER-GLIGIYHDWCEAFST-YP---RTYDLI 419 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l----~~~~~r-g~~~~~~~~~~~~~~-~p---~s~Dlv 419 (506)
.......||=+|+-+|+-..++.+--. ...+.++..|+.+. .+|.+| .+++.+.| ..+|. |- ...|+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D--A~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILED--ARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecc--cCCcHHhhhhcccccEE
Confidence 334456899999999999999988422 34577888877654 588888 46677644 33332 22 678999
Q ss_pred EEccccccccCcCCHHHHHHHHhhhccCCcEEEE
Q 010592 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++ ...++.+.+-+...++.-||+||+++|
T Consensus 150 y~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 150 YQ-----DVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EE-----ecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 88 122344555688889999999998877
No 451
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.63 E-value=0.043 Score=56.99 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=60.7
Q ss_pred CCEEEEECCCCChhHHHHhhC-------------------CcEEEecCccchHHHHHHHHHH-------------cCCCe
Q 010592 103 VRTALDTGCGVASWGAYLWSR-------------------NVIAMSFAPRDSHEAQVQFALE-------------RGVPA 150 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-------------------~v~~vdis~~di~~~~~~~a~~-------------~~~~~ 150 (506)
..+|+|+|||+|.++..+... .+.--|+-.+|...-...+... .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 458999999999766544221 1333466566664444333210 11111
Q ss_pred EEEEe---ccccCCCCCCCeeEEEEcCcccccCCCh--------------------------------------HHHHHH
Q 010592 151 VIGVL---GTIKMPYASRAFDMAHCSRCLIPWGAND--------------------------------------GRYMIE 189 (506)
Q Consensus 151 ~~~~~---d~~~lp~~~~sfDlV~~~~~l~~~~~~~--------------------------------------~~~l~e 189 (506)
.+..+ ....--||++|.++++++.++ ||.... ..+|+-
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 122334789999999999998 665421 134444
Q ss_pred HHHhcCCCeEEEEEcCCC
Q 010592 190 VDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 190 ~~rvLkPGG~li~~~p~~ 207 (506)
-.+-|.|||.++++....
T Consensus 223 Ra~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHHhccCcEEEEEEecC
Confidence 566789999999986433
No 452
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.59 E-value=0.12 Score=50.72 Aligned_cols=144 Identities=13% Similarity=0.033 Sum_probs=83.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cc----eecccccc----CCCCCC-ceeEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IG----IYHDWCEA----FSTYPR-TYDLI 419 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~----~~~~~~~~----~~~~p~-s~Dlv 419 (506)
..++||=||-|.|+.+..+.+.+ .+.+|+.+|+++.+++++++-- . .+ .+.-..++ +...++ .||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 57899999999999999998754 2357888899999999887631 1 00 00000111 222445 99999
Q ss_pred EEccccccccCc-CCHHHHHHHHhhhccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeec-CCC-CCCCeEEEE
Q 010592 420 HAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDH-EDG-PLVPEKILV 491 (506)
Q Consensus 420 ~~~~~~~~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~-~~~-~~~~~~~l~ 491 (506)
.....=...... .--...+..+.|.|+|||.+++.-. ......+.+.+++..-.+..... ... +..-+.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~ 234 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFAS 234 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEE
Confidence 983332111100 1124789999999999999999532 22444455556666555543222 111 111245677
Q ss_pred EEecc
Q 010592 492 AVKQY 496 (506)
Q Consensus 492 ~~k~~ 496 (506)
+.|..
T Consensus 235 ~s~~~ 239 (246)
T PF01564_consen 235 ASKDI 239 (246)
T ss_dssp EESST
T ss_pred EeCCC
Confidence 77654
No 453
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.54 E-value=0.021 Score=50.83 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCCceEEeecCcccHHHHHHHh-----CCCeEEEEeecCCCcccHHHHHhc
Q 010592 351 GRYRNIMDMNAGFGGFAAAIQS-----SKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 351 ~~~r~vLD~gcG~G~~~~~l~~-----~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.+...|+|+|||-|.++..|+. . ...+|+++|..+..++.+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 5677899999999999999987 3 357999999998888877766
No 454
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.47 E-value=0.1 Score=49.83 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCEEEEECCCCChhHHHHh----hCCcEEEecCccchHHHHHH-HHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 103 VRTALDTGCGVASWGAYLW----SRNVIAMSFAPRDSHEAQVQ-FALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~----~~~v~~vdis~~di~~~~~~-~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
+.+++|||+|.|.-+..|+ +.+++-+|-...-+ +..+ ...+-+++ +.+...-++.+.-...-||+|+|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4699999999997666655 22577777654322 2222 34455666 566655566554221119999996532
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEE
Q 010592 177 IPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
. ...++.-+...+|+||.++.
T Consensus 146 -~----L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 -S----LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -c----hHHHHHHHHHhcccCCcchh
Confidence 2 35677778899999998764
No 455
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.45 E-value=0.024 Score=59.00 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=64.8
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cceeccccccCCC----CCCceeEEEEcccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IGIYHDWCEAFST----YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~~~~~~~~~~~~----~p~s~Dlv~~~~~~~~ 427 (506)
+|||+-||+|.++..++....-+-.|+++|.++..++.+.+.- + +..+.-.+.+... ....||+|..+- |.
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG- 124 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG- 124 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC-
Confidence 6999999999999999876211357999999999998776632 1 1111112222221 125799999854 42
Q ss_pred ccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.....|...-+.+++||+|.|+
T Consensus 125 -----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 -----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -----CcHHHHHHHHHhcccCCEEEEE
Confidence 2346888999999999999995
No 456
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.0037 Score=56.08 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=36.4
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.....||.|+|+.|+ .+.+....+++.+.+.|+|.|.-++..|.-
T Consensus 99 ~eq~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 99 QEQHTFDIILAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HhhCcccEEEeccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 345689999999998 334445889999999999999988887754
No 457
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.13 Score=52.96 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=75.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC-------------------------------------------cE
Q 010592 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-------------------------------------------VI 126 (506)
Q Consensus 90 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~-------------------------------------------v~ 126 (506)
..|..+....+. ..++|-=||+|.+....+-.+ +.
T Consensus 181 aAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 181 AAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 344444433333 479999999998877665432 55
Q ss_pred EEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEEcCccc-ccCCC--h----HHHHHHHHHhcCCC
Q 010592 127 AMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLI-PWGAN--D----GRYMIEVDRVLRPG 197 (506)
Q Consensus 127 ~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~-~~~~~--~----~~~l~e~~rvLkPG 197 (506)
++|+++.++. .+..+|+..|+. +.|.+.|...++-+-+.+|+|+|+.-.= -+... . ..+.+.+.+.++--
T Consensus 259 G~Did~r~i~-~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 259 GSDIDPRHIE-GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EecCCHHHHH-HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 9999987774 444566666665 7888889888864447899999986331 11111 1 13444566777777
Q ss_pred eEEEEEcCCC
Q 010592 198 GYWVLSGPPI 207 (506)
Q Consensus 198 G~li~~~p~~ 207 (506)
+.++++++..
T Consensus 338 s~~v~tt~e~ 347 (381)
T COG0116 338 SRYVFTTSED 347 (381)
T ss_pred ceEEEEccHH
Confidence 8888886543
No 458
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.38 E-value=0.033 Score=55.08 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=65.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHH---cCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALE---RGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~---~~~~~~~~~~d~~~l 160 (506)
...++.|.+.+... .+..|||||+|.|.++..|++. .++++++++... +.-.+ ...++.+...|...+
T Consensus 16 ~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~-----~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLA-----KHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHH-----HHHHHHCTTCSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHH-----HHHHHHhhhcccceeeecchhcc
Confidence 55667777777543 4559999999999999999886 589999976322 22222 345677888888777
Q ss_pred CCCC---CCeeEEEEcCcccccCCChHHHHHHHHHhcCC
Q 010592 161 PYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP 196 (506)
Q Consensus 161 p~~~---~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP 196 (506)
.... +.-..|+++..+ + -...++..+...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 6544 456677776432 2 125666666664444
No 459
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.36 E-value=0.056 Score=54.49 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeE--EEEeecCCCcccHHHHHh--cCccceeccc-----cccCCCCC--CceeEEE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWV--MNVVPTLADKNTLGVIYE--RGLIGIYHDW-----CEAFSTYP--RTYDLIH 420 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~--~~v~~~d~~~~~l~~~~~--rg~~~~~~~~-----~~~~~~~p--~s~Dlv~ 420 (506)
...+|||+|.|+|.-+-++.+ +|- -.++-+.+|+..-+++.. +.......+| .++...+| ..|++++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhh
Confidence 344699999999987766644 331 234445566443333332 1221222222 12233344 8899888
Q ss_pred EccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh
Q 010592 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+.+=+-+....-.+...+..+..+|.|||.|+|.+.-
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 8555544443334566888899999999999997653
No 460
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.34 E-value=0.047 Score=51.50 Aligned_cols=119 Identities=17% Similarity=0.278 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceeccc
Q 010592 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDW 405 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~ 405 (506)
..|.+.+-+- +...+. .+.++||.||=|-|..+-.+++++.. .=+-+...++.++.-++-|- +....-|
T Consensus 84 m~WEtpiMha--~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nViil~g~W 158 (271)
T KOG1709|consen 84 MRWETPIMHA--LAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENVIILEGRW 158 (271)
T ss_pred hhhhhHHHHH--HHHHHh-hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccceEEEecch
Confidence 4676655432 122233 45788999999999999999886532 23345678888888877663 3444457
Q ss_pred cccCCCCC-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh
Q 010592 406 CEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 406 ~~~~~~~p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
...++++| ..||-|.- ..|+ .+-.++-..-+-+-|.|||||.+-.-....
T Consensus 159 eDvl~~L~d~~FDGI~y-DTy~--e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 159 EDVLNTLPDKHFDGIYY-DTYS--ELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred HhhhccccccCcceeEe-echh--hHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 78888888 89999885 3332 123366677888999999999998855443
No 461
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.26 E-value=0.038 Score=51.64 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=60.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------------cceeccccccCCCCCCceeEEEE
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------------IGIYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------------~~~~~~~~~~~~~~p~s~Dlv~~ 421 (506)
...|||||+|++...|...- ...-+.++++-...-+...+|-. +++.+. -++-++|+-|---..
T Consensus 63 efaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~--namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRT--NAMKFLPNFFEKGQL 139 (249)
T ss_pred eEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeec--cchhhccchhhhccc
Confidence 48999999999998887641 22345555544333333333310 222222 223334544442222
Q ss_pred ccccccc--------cCcCCH--HHHHHHHhhhccCCcEEEEE-eChhhHHHHHHHHhcCC
Q 010592 422 HGLFSLY--------KDKCNI--EDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMR 471 (506)
Q Consensus 422 ~~~~~~~--------~~~~~~--~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~ 471 (506)
+-.|-.. +|+-.+ ...|.|..=+||+||.++.. |-.+.-+.+...+....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 2222211 111111 25888999999999998874 54455555555555444
No 462
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.25 E-value=0.03 Score=53.42 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=62.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc---cceecc-cccc----CCCCC-
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHD-WCEA----FSTYP- 413 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~---~~~~~~-~~~~----~~~~p- 413 (506)
.++.-..++.||+|.=||.-+.+++..--....|+++|..++..+++.+ .|. +...+. -++. +..++
T Consensus 68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 3444456789999977776544443221113689999998777765543 233 222211 1122 22244
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+|||+++. .+.+ ..-.....+.-|.|||||.+++-
T Consensus 148 ~tfDfaFv----DadK--~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 148 GTFDFAFV----DADK--DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CceeEEEE----ccch--HHHHHHHHHHHhhcccccEEEEe
Confidence 89999998 3222 12236888899999999999993
No 463
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.13 Score=53.18 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=72.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCC-eEEEEeecCCCcccHHHHHhc----Cccc--eeccccccCCC-CC--Cce
Q 010592 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKL-WVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFST-YP--RTY 416 (506)
Q Consensus 347 ~~~~~~~r~vLD~gcG~G~~~~~l~~~~~-~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~~~~~~~-~p--~s~ 416 (506)
.+.......||||++++|+=+.+|++.-. ....|+++|.++.-+....++ |+.. ..+.-...++. .+ ..|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 34555668899999999997777765321 124579999998877765554 4422 11111111222 23 259
Q ss_pred eEEEE------cccccc---c---cCcCCHH-------HHHHHHhhhccCCcEEEEEe----ChhhHHHHHHHHhc
Q 010592 417 DLIHA------HGLFSL---Y---KDKCNIE-------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG 469 (506)
Q Consensus 417 Dlv~~------~~~~~~---~---~~~~~~~-------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~ 469 (506)
|.|.. .+++.. . ....++. .+|....++|||||.|+-+. ..+-...++.++.+
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 98886 234420 0 0011111 48999999999999999953 23334455555544
No 464
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.17 E-value=0.041 Score=58.24 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccc
Q 010592 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~~-~~~~~~d~~ 158 (506)
..++.+...+.+++.+..+ ..+||+-||||.++..+++. .|+++++++..+. .+...|..+|+. +.|.++.++
T Consensus 366 ~~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~-dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE-DAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhccccceeeeecChhhcc-hhhhcchhcCccceeeeecchh
Confidence 3446666778888866655 48999999999999999987 6999999997664 444556666665 566665443
No 465
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.03 E-value=0.0083 Score=50.41 Aligned_cols=95 Identities=17% Similarity=0.063 Sum_probs=35.9
Q ss_pred EeecCcccHHHHHHHhCC--CeEEEEeecCCCc---ccHHHHHhcCccceeccccccC----CCCC-CceeEEEEccccc
Q 010592 357 MDMNAGFGGFAAAIQSSK--LWVMNVVPTLADK---NTLGVIYERGLIGIYHDWCEAF----STYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~~--~~~~~v~~~d~~~---~~l~~~~~rg~~~~~~~~~~~~----~~~p-~s~Dlv~~~~~~~ 426 (506)
|++|+..|..+..|++.- .-...++.+|..+ ...+.+.+.++...++....++ +.++ +.||+|+...-=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H- 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH- 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-
Confidence 578999999877776521 0113688888876 3444554444433333333333 2344 899999983311
Q ss_pred cccCcCCHHHHHHHHhhhccCCcEEEEEe
Q 010592 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.......-|..+.+.|+|||.+++-|
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11234567888889999999999865
No 466
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.00 E-value=0.071 Score=49.52 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchH-------HHHHHHHHHcCCCeE-EEEeccccCC-------C
Q 010592 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSH-------EAQVQFALERGVPAV-IGVLGTIKMP-------Y 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~-------~~~~~~a~~~~~~~~-~~~~d~~~lp-------~ 162 (506)
++.+|+|+=.|.|+|++.++.. | .+..+.|.+.. ......+++....+. ..-.....++ .
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~ 126 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLV 126 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccccc
Confidence 4559999999999999998775 3 33344443331 111112222111111 1101111222 1
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..++|.++-...+ | ......+..++++.|||||.+.+..+..
T Consensus 127 ~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 127 PTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred ccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 23344444443322 3 2334789999999999999999976433
No 467
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.019 Score=51.62 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=78.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhcCcccee--------ccccccCCCCCCceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLIGIY--------HDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~rg~~~~~--------~~~~~~~~~~p~s~Dlv~~ 421 (506)
.+.||.+|.|.=++|..|....+.+-.|--.|..+..+. -+..+.....+ +.|.......-.+||+|.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 467999999999999888776555667777776644443 33333211111 1122222222379999999
Q ss_pred ccccccccCcCCHHHHHHHHhhhccCCcEEEEEeCh--hhHHHHHHHHhcCCceEEEe
Q 010592 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--~~~~~~~~~~~~~~w~~~~~ 477 (506)
+.-+=.-.++ +.++.-|.+.|||.|..++.-+- ..+++..+.+...++.+...
T Consensus 110 ADClFfdE~h---~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 110 ADCLFFDEHH---ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred ccchhHHHHH---HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEec
Confidence 4433222222 35888899999999998886543 36788888888888887654
No 468
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.78 E-value=0.4 Score=45.00 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=73.2
Q ss_pred HHHHHHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC---C-cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010592 86 DKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR---N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~---~-v~~vdis~~di~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
..+...|..-+. .+-..+.+||=+|+.+|....++++- | +.++++|+... ...+..+.+|. ++.-...|+ +.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~-Ni~PIL~DA-~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRP-NIIPILEDA-RK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCC-Cceeeeccc-CC
Confidence 344444544442 23344569999999999877777653 4 88999999766 55667777763 223233343 33
Q ss_pred C----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 161 P----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
| .--+..|+|++--+ + .....-+..++..-||+||+++++.
T Consensus 136 P~~Y~~~Ve~VDviy~DVA--Q-p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA--Q-PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cHHhhhhcccccEEEEecC--C-chHHHHHHHHHHHhcccCCeEEEEE
Confidence 3 12346899998432 1 2223678888999999999888864
No 469
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.63 E-value=0.056 Score=54.12 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEE-eccccC-C-CCCCCeeEEEE
Q 010592 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGV-LGTIKM-P-YASRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~~~~~~-~d~~~l-p-~~~~sfDlV~~ 172 (506)
.++..|||+.+|.|.=+..+++. .+++.|+++.-+ ........+.|....... .|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34558999999999877777654 388999977533 233334445565544433 555443 2 22346999995
Q ss_pred ----cCcccccCCCh------------------HHHHHHHHHhc----CCCeEEEEEcCC
Q 010592 173 ----SRCLIPWGAND------------------GRYMIEVDRVL----RPGGYWVLSGPP 206 (506)
Q Consensus 173 ----~~~l~~~~~~~------------------~~~l~e~~rvL----kPGG~li~~~p~ 206 (506)
+... .+..++ ..+|..+.+.| ||||+++.++-.
T Consensus 163 DaPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 3221 111111 16789999999 999999998743
No 470
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.24 Score=52.59 Aligned_cols=119 Identities=13% Similarity=0.216 Sum_probs=78.4
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCCCCC---
Q 010592 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFSTYP--- 413 (506)
Q Consensus 344 ~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~~~p--- 413 (506)
.+..+...+..+|||+=||.|+|+..|+++. ..|.+++.++.+++.|.+- |+ .+.+.-+ +.+..-.
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHHhhhcccc
Confidence 3344455556789999999999999999753 7899999999999876653 32 2222222 2222211
Q ss_pred CceeEEEEccccccccCcCCHH-HHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCce
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIE-DILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~-~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~ 473 (506)
..+|+|.. . ++|..+. .+++++ --++|-..++|+-....+..=-.++.+-+..
T Consensus 361 ~~~d~Vvv----D--PPR~G~~~~~lk~l-~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 361 YKPDVVVV----D--PPRAGADREVLKQL-AKLKPKRIVYVSCNPATLARDLAILASTGYE 414 (432)
T ss_pred CCCCEEEE----C--CCCCCCCHHHHHHH-HhcCCCcEEEEeCCHHHHHHHHHHHHhCCeE
Confidence 47798887 1 2466665 566666 4578999999998876554434445555554
No 471
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.50 E-value=0.083 Score=51.96 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=52.4
Q ss_pred CCCEEEEECCCCC--hhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCC--C----CCCC
Q 010592 102 TVRTALDTGCGVA--SWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMP--Y----ASRA 166 (506)
Q Consensus 102 ~~~~VLDiGCG~G--~~~~~L~~~-----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~~~d~~~lp--~----~~~s 166 (506)
..+..||||||-- ...-.++++ .|.-+|..|..+..+..-++ .... ..+..+|..+.. + -.+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 4568999999954 345555443 58889998754432222222 2233 567777753211 0 0112
Q ss_pred ee-----EEEEcCcccccCC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010592 167 FD-----MAHCSRCLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fD-----lV~~~~~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+| .|+...++++..+ ++..++..+...|.||.+|+++..
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 22 3555566766544 447999999999999999999853
No 472
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.37 E-value=0.029 Score=51.18 Aligned_cols=110 Identities=17% Similarity=0.329 Sum_probs=57.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCC-C-ceeEEEEc-
Q 010592 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYP-R-TYDLIHAH- 422 (506)
Q Consensus 354 r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p-~-s~Dlv~~~- 422 (506)
++|+|+.||.||-+..++... -.|+++|.++..+..|..- |+...+...+.++ +... + .||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999864 5799999999999987664 3222223333332 2233 2 28999973
Q ss_pred ----------ccccc--ccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHh
Q 010592 423 ----------GLFSL--YKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 468 (506)
Q Consensus 423 ----------~~~~~--~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~ 468 (506)
..|.. .....++..++..+.++- |.=.+.+ -....+..|.+++.
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-~nv~l~L-PRn~dl~ql~~~~~ 133 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-PNVVLFL-PRNSDLNQLSQLTR 133 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S-EEEEE-ETTB-HHHHHHT--
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-CCEEEEe-CCCCCHHHHHHHhc
Confidence 24444 122224556666665553 3322222 22223455555543
No 473
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.32 E-value=0.079 Score=48.92 Aligned_cols=92 Identities=18% Similarity=0.111 Sum_probs=60.4
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010592 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~-----~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
..+.|+|+|+|.++...++. +|.+++.+|.- ...|.++ ..+......|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~-----a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKR-----ARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHH-----HHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 37899999999877666554 69999987642 2334433 2335666777777777 468999984321
Q ss_pred cccCCC-hHHHHHHHHHhcCCCeEEEE
Q 010592 177 IPWGAN-DGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~~~-~~~~l~e~~rvLkPGG~li~ 202 (506)
..+... .-..+..+...||-.+.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 112222 24677777778888888764
No 474
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.26 E-value=0.37 Score=48.13 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=46.2
Q ss_pred CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEE--------EeChh---------hHHHHHHHHhcCCceEEE
Q 010592 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--------RDEVD---------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 414 ~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii--------~d~~~---------~~~~~~~~~~~~~w~~~~ 476 (506)
++||+|.....+... .++-+.|.-|..+|||||..|= .|..+ ..+.|..+++.++|++..
T Consensus 258 ~~~d~VvTcfFIDTa---~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA---HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEeech---HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 479988876555422 2677899999999999998764 34211 568899999999999775
Q ss_pred ee
Q 010592 477 VD 478 (506)
Q Consensus 477 ~~ 478 (506)
.+
T Consensus 335 e~ 336 (369)
T KOG2798|consen 335 ER 336 (369)
T ss_pred ee
Confidence 44
No 475
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.12 E-value=0.1 Score=47.65 Aligned_cols=69 Identities=26% Similarity=0.236 Sum_probs=41.8
Q ss_pred EEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC--CCCCC-eeEEEEcC
Q 010592 105 TALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP--YASRA-FDMAHCSR 174 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~--~v~~vdis~~di~~~~~~~a~~~~~--~~~~~~~d~~~lp--~~~~s-fDlV~~~~ 174 (506)
.|+|+.||.|..+..++.. .|+++|+++.-+ +-+...|.-.|+ ++.+..+|...+. +.... ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999999987 499999977544 233344554554 4677777764432 22222 89999753
No 476
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.08 E-value=0.33 Score=50.30 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=65.5
Q ss_pred CCCCCCEEEEECCCCChhHHHHhh----CC-cEEEecCccchHHHHHHHHHHcCCCeEE-EEeccccCC---CCCCCeeE
Q 010592 99 KNGTVRTALDTGCGVASWGAYLWS----RN-VIAMSFAPRDSHEAQVQFALERGVPAVI-GVLGTIKMP---YASRAFDM 169 (506)
Q Consensus 99 ~~~~~~~VLDiGCG~G~~~~~L~~----~~-v~~vdis~~di~~~~~~~a~~~~~~~~~-~~~d~~~lp---~~~~sfDl 169 (506)
.+.++.+|||+.+..|.=+.+++. .| +.+.|.+..-+ +...+.+.+-|+...+ ...|...+| ++. +||-
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 345677999999999954444433 35 56777655333 3334455555665443 444555554 444 8999
Q ss_pred EE----EcCcccccCC-----------------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010592 170 AH----CSRCLIPWGA-----------------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~----~~~~l~~~~~-----------------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+ |+.+-.-+.+ -...+|..+...+++||+|+.++-..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99 4441111100 01367888899999999999987444
No 477
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.26 Score=45.98 Aligned_cols=109 Identities=21% Similarity=0.325 Sum_probs=69.4
Q ss_pred HHhhhcCC--CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc---cceecc-ccccCCCC
Q 010592 343 KINRLLDS--GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHD-WCEAFSTY 412 (506)
Q Consensus 343 ~~~~~~~~--~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~---~~~~~~-~~~~~~~~ 412 (506)
.++..+.. -....+||+=||+|.++..-+.+|. ..++-+|.+...+.++.+- ++ ...++. -...++..
T Consensus 32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 34444443 3455799999999999998888874 5788889888888877664 11 111111 11112223
Q ss_pred C--CceeEEEEccccccccCcCCH--HH--HHHHHhhhccCCcEEEEEeCh
Q 010592 413 P--RTYDLIHAHGLFSLYKDKCNI--ED--ILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 413 p--~s~Dlv~~~~~~~~~~~~~~~--~~--~l~e~~RvLrPgG~~ii~d~~ 457 (506)
. ..||+|+.+-=|. ..-+ +. .+.+-..+|+|+|.+++....
T Consensus 110 ~~~~~FDlVflDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 110 GTREPFDLVFLDPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCCcccEEEeCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 3 3599999965554 2222 22 333366899999999996554
No 478
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.86 E-value=0.015 Score=55.26 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=79.9
Q ss_pred hhhhhhHHHHHHHHHHhh-----hcCCCCCceEEeecCcccHHHHHHHhCC--------CeEEEEeecCCCcccHHHH--
Q 010592 329 EDSNKWKKHVNAYKKINR-----LLDSGRYRNIMDMNAGFGGFAAAIQSSK--------LWVMNVVPTLADKNTLGVI-- 393 (506)
Q Consensus 329 ~d~~~W~~~v~~y~~~~~-----~~~~~~~r~vLD~gcG~G~~~~~l~~~~--------~~~~~v~~~d~~~~~l~~~-- 393 (506)
+..+.|+.+-.. +|+. .|-.+ .++|.|+++.+|.+...|.++= .-.-.++++|+. .|..+-
T Consensus 16 AKe~gwRARSAF--KLlqideef~i~~g-v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ-~MaPI~GV 91 (294)
T KOG1099|consen 16 AKENGWRARSAF--KLLQIDEEFQIFEG-VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQ-PMAPIEGV 91 (294)
T ss_pred HHhccchHHhHH--HHhhhhhhhhHHhh-hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecc-cCCccCce
Confidence 445677765442 2222 22223 7789999999999988886421 101138999987 666532
Q ss_pred -HhcCccceeccccccCCCCC-CceeEEEEccccccc--------cCcCCHHHHHHHHhhhccCCcEEEE-----EeChh
Q 010592 394 -YERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY--------KDKCNIEDILLEMDRILRPEGAIII-----RDEVD 458 (506)
Q Consensus 394 -~~rg~~~~~~~~~~~~~~~p-~s~Dlv~~~~~~~~~--------~~~~~~~~~l~e~~RvLrPgG~~ii-----~d~~~ 458 (506)
.-+|-|........-+..+. .--|+|.|.++=... .+..-+..+|.=..+||||||.|+- +|..-
T Consensus 92 ~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tsl 171 (294)
T KOG1099|consen 92 IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSL 171 (294)
T ss_pred EEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHH
Confidence 11111111110111122344 478899996653311 1122233577777899999999986 34444
Q ss_pred hHHHHHHHHhcCCc
Q 010592 459 EIIKVKKIVGGMRW 472 (506)
Q Consensus 459 ~~~~~~~~~~~~~w 472 (506)
.-..|+.++++..-
T Consensus 172 Lysql~~ff~kv~~ 185 (294)
T KOG1099|consen 172 LYSQLRKFFKKVTC 185 (294)
T ss_pred HHHHHHHHhhceee
Confidence 55677888777643
No 479
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.78 E-value=0.55 Score=46.64 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=68.3
Q ss_pred CceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHh--c---CccceeccccccCCC--CC-CceeEEEEcc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE--R---GLIGIYHDWCEAFST--YP-RTYDLIHAHG 423 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~--r---g~~~~~~~~~~~~~~--~p-~s~Dlv~~~~ 423 (506)
-++|+=||+|+=-+++.+..+ -.....|+.+|.+++.++.++. + |+-..+...|.+... .+ ..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 358999999988777766542 1224678899999888887643 1 231111222333322 23 7899988755
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.... ...+...+|..+.+.++||..+++|-..+ .+....+...--+|++...-+-.++ .-.-++++||.
T Consensus 201 lVg~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~-ViNSvv~~rk~ 272 (276)
T PF03059_consen 201 LVGM--DAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDE-VINSVVFARKK 272 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT----EEEEE---
T ss_pred hccc--ccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCC-ceeEEEEEEec
Confidence 5442 23467889999999999999999996543 1111111112228987655554333 23557888885
No 480
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.76 E-value=0.24 Score=46.08 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCceEEeecCcccHHHHHHHhC---CCeEEEEeecCCC-------cccHHHHHhcCccceecccc---ccCCCCCCceeE
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLAD-------KNTLGVIYERGLIGIYHDWC---EAFSTYPRTYDL 418 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~---~~~~~~v~~~d~~-------~~~l~~~~~rg~~~~~~~~~---~~~~~~p~s~Dl 418 (506)
...+|.|+=-|-|.|.+-|... ...|-+++|.+.. +.+-.++++.+. .+..-.. -++. .|+-.|+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCCcccc
Confidence 3467999999999998877642 2256777777652 122223333332 1110001 1222 3466666
Q ss_pred EEEcccccc----ccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 419 IHAHGLFSL----YKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 419 v~~~~~~~~----~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+...+.-+. ..|......+..++++.|||||.+.+.|.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 655333321 22344567899999999999999999653
No 481
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.75 E-value=0.69 Score=47.85 Aligned_cols=122 Identities=14% Similarity=0.249 Sum_probs=68.5
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc---cccCCC--
Q 010592 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW---CEAFST-- 411 (506)
Q Consensus 341 y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~---~~~~~~-- 411 (506)
|...+..+...+. +|||+-||.|.|+..|++.. -.|++++..+++++.|.+- ++ ..+... ++++..
T Consensus 186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHH
T ss_pred HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHH
Confidence 3334444444433 69999999999999999875 4799999999999877653 32 222221 222211
Q ss_pred --------C-----C-CceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChh-hHHHHHHHHhcCCceEEE
Q 010592 412 --------Y-----P-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 412 --------~-----p-~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~ 476 (506)
. . ..+|+|.. . ++|..+...+.++ +.++.=.++|+-... ....++.+.+ +|++..
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vil----D--PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~~ 330 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVIL----D--PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLEK 330 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEEE
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEE----c--CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEEE
Confidence 1 1 26788876 1 2344443333333 235667888886654 4556665543 788664
Q ss_pred e
Q 010592 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 331 v 331 (352)
T PF05958_consen 331 V 331 (352)
T ss_dssp E
T ss_pred E
Confidence 3
No 482
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.59 E-value=0.41 Score=48.71 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=76.5
Q ss_pred cCCCCCCChhhH-HHHHHHHHhhCCCC-CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH--
Q 010592 74 FPGGGTQFPQGA-DKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE-- 145 (506)
Q Consensus 74 f~~~~~~f~~~~-~~~~~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~-- 145 (506)
+..++-||...- ..|-+.+. .-+.. -...++||-+|.|.|--++.|.+. .++-+|++|.|++-+....+..
T Consensus 260 YldG~LQfsTrDe~RYhEsLV-~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~ 338 (508)
T COG4262 260 YLDGGLQFSTRDEYRYHESLV-YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL 338 (508)
T ss_pred EEcCceeeeechhhhhhheee-ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh
Confidence 455666665444 33322221 11111 123468999999999999999886 5888999988776554222221
Q ss_pred -c----CCCeEEEEecccc-CCCCCCCeeEEEEcCcccccCCCh-----HHHHHHHHHhcCCCeEEEEEc
Q 010592 146 -R----GVPAVIGVLGTIK-MPYASRAFDMAHCSRCLIPWGAND-----GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 146 -~----~~~~~~~~~d~~~-lp~~~~sfDlV~~~~~l~~~~~~~-----~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ...+.....|+.+ +.-..+.||.|+.-.. .+-.+.. ..+..-+.|.|+++|.+++..
T Consensus 339 N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 339 NQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 1 1234445445433 2334568999997431 1111101 267778889999999999964
No 483
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.56 E-value=0.07 Score=47.13 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=33.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
+|||+|||+|.++..++..+. ...|+++|.++.+.+.+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHH
Confidence 489999999999998887642 23799999999998866654
No 484
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.55 E-value=0.43 Score=49.70 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=43.0
Q ss_pred CceEEeecCcccHHHHHHH--------hC------CCeEEEEeecCCCcccHHHHHhcCccce-----------------
Q 010592 353 YRNIMDMNAGFGGFAAAIQ--------SS------KLWVMNVVPTLADKNTLGVIYERGLIGI----------------- 401 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~--------~~------~~~~~~v~~~d~~~~~l~~~~~rg~~~~----------------- 401 (506)
.-+|+|+|||+|..+..+. ++ ......|.--|.+.|--...+.. +...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~-L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQL-LPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhh-chhhhhhhcchhhhccccCCC
Confidence 4579999999997654432 11 12236677777775554433322 1100
Q ss_pred -e--ccccccCCC--CC-CceeEEEEcccccccc
Q 010592 402 -Y--HDWCEAFST--YP-RTYDLIHAHGLFSLYK 429 (506)
Q Consensus 402 -~--~~~~~~~~~--~p-~s~Dlv~~~~~~~~~~ 429 (506)
+ ...-..|-. +| +|.+++|++..++++.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 0 000011111 56 9999999999988654
No 485
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.47 E-value=0.025 Score=47.43 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=37.8
Q ss_pred EEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccC-C-CCCCCeeEEEEcCc
Q 010592 107 LDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKM-P-YASRAFDMAHCSRC 175 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~-------~v~~vdis~~di~~~~~~~a~~~~--~~~~~~~~d~~~l-p-~~~~sfDlV~~~~~ 175 (506)
||||+..|..+..+++. .+.++|..+. .+...+..++.+ ..+.+...+.... + ++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999887777653 3788888663 112222222222 2366666665322 1 33578999998542
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010592 176 LIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 32222357788899999999999875
No 486
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.46 E-value=0.21 Score=50.05 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhhCCCCCC---CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEE
Q 010592 83 QGADKYIDQLASVIPIKNG---TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIG 153 (506)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~~---~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~~~ 153 (506)
.+...|+.-|.++|..... ...++||||+|....-..|..+ .++|+||++..+..+........++. +.+.
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 3446777778887743221 2458999999988554444433 58899998876655555544432443 3333
Q ss_pred Eecc-c----cCCCCCCCeeEEEEcCcccc
Q 010592 154 VLGT-I----KMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 154 ~~d~-~----~lp~~~~sfDlV~~~~~l~~ 178 (506)
.... . .+..+...||+.+|+.-|+.
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EcCCccccchhhhcccceeeEEecCCcccc
Confidence 2221 1 12223468999999987633
No 487
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.33 E-value=0.18 Score=44.69 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=56.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCC--C-CceeEEEEcccccc
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTY--P-RTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~--p-~s~Dlv~~~~~~~~ 427 (506)
...++|+|||.|.+..+..-.+ .-.|+++|+.++.|++...... --...-+|.++-+. . +.||.+.-+.=|..
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 4469999999999764443322 2479999999999998764432 00111223333322 2 89999999888886
Q ss_pred ccCcCCHHH--HHHHHhh
Q 010592 428 YKDKCNIED--ILLEMDR 443 (506)
Q Consensus 428 ~~~~~~~~~--~l~e~~R 443 (506)
-....+++. +-.+|.+
T Consensus 127 k~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 127 KKKGADMEFVSAALKVAS 144 (185)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 666667653 3344444
No 488
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.19 E-value=0.032 Score=47.14 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=29.0
Q ss_pred eeEEEEccccc--cccCcC-CHHHHHHHHhhhccCCcEEEEE
Q 010592 416 YDLIHAHGLFS--LYKDKC-NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 416 ~Dlv~~~~~~~--~~~~~~-~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
||+|.|-+|-- |+.+.. .+..++..|++.|||||.||+.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 89999954433 333332 4678999999999999999993
No 489
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.05 E-value=0.25 Score=48.44 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=64.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--cc--ceeccccccCCCCC-CceeEEEEc----
Q 010592 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LI--GIYHDWCEAFSTYP-RTYDLIHAH---- 422 (506)
Q Consensus 352 ~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~--~~~~~~~~~~~~~p-~s~Dlv~~~---- 422 (506)
....||.+|-|||.+...|.+.+ .+|++++..+.|+....+|+ .. +-+.-.-.++-..+ -.||++.++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQ 134 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCcc
Confidence 34579999999999999999987 58999999999999999884 22 21211223443344 678887772
Q ss_pred ----cccccccCc----CCHH--HHHHHHhhhccCCcEEEEEeC
Q 010592 423 ----GLFSLYKDK----CNIE--DILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 423 ----~~~~~~~~~----~~~~--~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+|-.+.++ |.+. ..-.-+.-+-|||-.++.+=+
T Consensus 135 ISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrls 178 (315)
T KOG0820|consen 135 ISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLS 178 (315)
T ss_pred ccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceee
Confidence 334344433 3211 111111226678887777543
No 490
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.04 E-value=0.35 Score=45.15 Aligned_cols=100 Identities=24% Similarity=0.330 Sum_probs=61.9
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc-cceeccccccCCCCCCceeEEEEcc
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL-IGIYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~-~~~~~~~~~~~~~~p~s~Dlv~~~~ 423 (506)
.+-..++|||+|+|.|--+.+-+..| ...|+..|..+...+.+.- .|. +...| .+.-.-|..||+|.++.
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~---~d~~g~~~~~Dl~LagD 150 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVSILFTH---ADLIGSPPAFDLLLAGD 150 (218)
T ss_pred cccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccceeEEee---ccccCCCcceeEEEeec
Confidence 44456789999999998655544443 2568888887655553321 121 33443 23323569999999988
Q ss_pred ccccccCcCCHHHHHHHHhhhccCCcEEEEEeC
Q 010592 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|= ++..-..++.=.+|...-|-.++|-|+
T Consensus 151 lfy---~~~~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 151 LFY---NHTEADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred eec---CchHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 886 444445566655555556666666554
No 491
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=92.98 E-value=0.19 Score=50.37 Aligned_cols=126 Identities=19% Similarity=0.264 Sum_probs=74.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--ee-ccccccCCCCC-CceeEE
Q 010592 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IY-HDWCEAFSTYP-RTYDLI 419 (506)
Q Consensus 348 ~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~-~~~~~~~~~~p-~s~Dlv 419 (506)
+.......||||+|+.|+-+.+|++.-.-...+++.|.+++-+....++ |+.. .. .+-....+..+ ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 4445566799999999997776665211124799999998888766553 4321 11 11111111123 459988
Q ss_pred EEc----cccccccCcCCHH----------------HHHHHHhhhc----cCCcEEEEEe----ChhhHHHHHHHHhcC-
Q 010592 420 HAH----GLFSLYKDKCNIE----------------DILLEMDRIL----RPEGAIIIRD----EVDEIIKVKKIVGGM- 470 (506)
Q Consensus 420 ~~~----~~~~~~~~~~~~~----------------~~l~e~~RvL----rPgG~~ii~d----~~~~~~~~~~~~~~~- 470 (506)
..+ +.-. +....++. .+|....+.| ||||+++-+. ..+-.+.++.++++.
T Consensus 161 lvDaPCSg~G~-i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 161 LVDAPCSGLGT-IRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEECSCCCGGG-TTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hcCCCccchhh-hhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 862 2211 11122221 4899999999 9999999964 233455666666654
Q ss_pred CceE
Q 010592 471 RWDT 474 (506)
Q Consensus 471 ~w~~ 474 (506)
.|+.
T Consensus 240 ~~~l 243 (283)
T PF01189_consen 240 DFEL 243 (283)
T ss_dssp SEEE
T ss_pred CcEE
Confidence 4543
No 492
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.76 E-value=1 Score=44.70 Aligned_cols=101 Identities=10% Similarity=0.146 Sum_probs=54.2
Q ss_pred CCEEEEECCCCChhHHHHhh-C-----CcEEEecCccchHHHHHHHHH---HcCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010592 103 VRTALDTGCGVASWGAYLWS-R-----NVIAMSFAPRDSHEAQVQFAL---ERGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~-~-----~v~~vdis~~di~~~~~~~a~---~~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
+.+|+=||||.=-++..+.. + .++++|+++.....+. +... .-+....+...|....+..-..||+|+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 45999999998766655543 2 2678888764332222 1212 12445677777776666555689999976
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010592 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...-.-..+...++..+.+.++||..+++..
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5331111244899999999999999999873
No 493
>PHA01634 hypothetical protein
Probab=92.69 E-value=0.23 Score=43.02 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=49.5
Q ss_pred hhhhhhh-hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh
Q 010592 325 ESYQEDS-NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 395 (506)
Q Consensus 325 ~~f~~d~-~~W~~~v~~y~~~~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~ 395 (506)
++|.... .+|+.....|..+.- ..++|+|+|++.|.-+.+++-+|. -.|+++..++...+...+
T Consensus 5 ~yf~~~~c~ywrey~~~Y~~idv-----k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 5 EYFRKLECDYWREYPHAYGMLNV-----YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred HHHHHccchHHHHHHHHhhheee-----cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHH
Confidence 4565544 899999999876533 356899999999999998887763 579999998777776655
No 494
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.69 E-value=0.75 Score=48.72 Aligned_cols=98 Identities=12% Similarity=0.234 Sum_probs=69.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-----ceeccccccCCCCCCceeEEEEcccccccc
Q 010592 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-----GIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-----~~~~~~~~~~~~~p~s~Dlv~~~~~~~~~~ 429 (506)
++|=+|||--.+...|.+.|. .+++-+|.|+-.++.+..++.. -....-...+.+-+.+||+|..-+.+.++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 799999999999999998775 6789999998888877776531 111000112333449999999876666543
Q ss_pred CcC-------CHHHHHHHHhhhccCCcEEEEE
Q 010592 430 DKC-------NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 430 ~~~-------~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-. .....+.|++|+|+|||+++.-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 211 2235889999999999997764
No 495
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=92.64 E-value=0.28 Score=48.22 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=50.8
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCC--C--ceeEE
Q 010592 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYP--R--TYDLI 419 (506)
Q Consensus 345 ~~~~~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p--~--s~Dlv 419 (506)
...+......+||+||+|.|.++..|.+++ -.|++++.++.++++-.++. ....+.-..+++-.++ . .++.|
T Consensus 23 v~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~v 99 (259)
T COG0030 23 VEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKV 99 (259)
T ss_pred HHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEE
Confidence 333444446789999999999999999986 46899999988888887773 1221211224544444 3 57777
Q ss_pred EE
Q 010592 420 HA 421 (506)
Q Consensus 420 ~~ 421 (506)
.+
T Consensus 100 Va 101 (259)
T COG0030 100 VA 101 (259)
T ss_pred EE
Confidence 77
No 496
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.62 E-value=0.21 Score=46.85 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.9
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEec
Q 010592 105 TALDTGCGVASWGAYLWSR----NVIAMSF 130 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdi 130 (506)
...|||||.|.+...|+.. -+.+++|
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehh
Confidence 6899999999999999887 2666666
No 497
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.58 E-value=1.2 Score=41.36 Aligned_cols=131 Identities=18% Similarity=0.158 Sum_probs=67.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------cceeccccccCCCCC-CceeEEEE
Q 010592 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 353 ~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~~~~~~~~~~~~~p-~s~Dlv~~ 421 (506)
-.+|||+||.+|.+..--.++.-...-|.++|+- .+.--+|. ...+...-|. +| +..|+|.+
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll----h~~p~~Ga~~i~~~dvtdp~~~~ki~e~---lp~r~VdvVlS 142 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL----HIEPPEGATIIQGNDVTDPETYRKIFEA---LPNRPVDVVLS 142 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeee----eccCCCCcccccccccCCHHHHHHHHHh---CCCCcccEEEe
Confidence 4579999999999977665543233456666643 11111221 1111112233 35 88999988
Q ss_pred cccccccc-----CcCCHH---HHHHHHhhhccCCcEEEEE-----eChhhHHHHHHHHhcCCceEEEeecC-CCCCCCe
Q 010592 422 HGLFSLYK-----DKCNIE---DILLEMDRILRPEGAIIIR-----DEVDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPE 487 (506)
Q Consensus 422 ~~~~~~~~-----~~~~~~---~~l~e~~RvLrPgG~~ii~-----d~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~ 487 (506)
+.+=.... |-..++ .+|.=.--.|+|+|.++.. +.......|++.+...+ .+..+ .-..+.|
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk----~vKP~Asr~eS~E 218 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK----KVKPDASRDESAE 218 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE----eeCCccccccccc
Confidence 43322111 111111 2333333567899999984 33334455555544332 32222 1112468
Q ss_pred EEEEEEe
Q 010592 488 KILVAVK 494 (506)
Q Consensus 488 ~~l~~~k 494 (506)
.+++|++
T Consensus 219 ~y~v~~~ 225 (232)
T KOG4589|consen 219 TYLVCLN 225 (232)
T ss_pred eeeeeee
Confidence 8999876
No 498
>PRK10742 putative methyltransferase; Provisional
Probab=92.57 E-value=0.36 Score=47.09 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=70.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc----------------eecc-ccccCCC
Q 010592 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG----------------IYHD-WCEAFST 411 (506)
Q Consensus 349 ~~~~~r~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~----------------~~~~-~~~~~~~ 411 (506)
+.+..-+|||+=+|+|..+..++..| ..|+.++-++-+..+.. .|+-. .++. -.+-+..
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~-dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLD-DGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHH-HHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 33333389999999999999999987 45999998865444322 22211 1111 0111222
Q ss_pred CCCceeEEEEccccccccCcCCHHHHHHHHhhhccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC
Q 010592 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 412 ~p~s~Dlv~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.+.+||+|+.+-.|.+-... ..+.+|| |+++. |+ -++.+..+-|+.-+...+=+|.+-+..
T Consensus 161 ~~~~fDVVYlDPMfp~~~ks---a~vkk~m-r~~~~---l~-g~d~d~~~lL~~Al~~A~kRVVVKrp~ 221 (250)
T PRK10742 161 ITPRPQVVYLDPMFPHKQKS---ALVKKEM-RVFQS---LV-GPDLDADGLLEPARLLATKRVVVKRPD 221 (250)
T ss_pred CCCCCcEEEECCCCCCCccc---cchhhhH-HHHHH---hc-CCCCChHHHHHHHHHhcCceEEEecCC
Confidence 34689999999999853322 3366777 55542 11 122233445566666666666665554
No 499
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.55 E-value=0.21 Score=44.02 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=27.1
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHH
Q 010592 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQ 139 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~ 139 (506)
++||||||.|.++..++.. .+.+++.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999998875 3788888876554333
No 500
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.50 E-value=0.31 Score=46.58 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHhhCC----CCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eE
Q 010592 82 PQGADKYIDQLASVIP----IKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AV 151 (506)
Q Consensus 82 ~~~~~~~~~~l~~~l~----~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~di~~~~~~~a~~~~~~--~~ 151 (506)
.++...|++.++++|. ...++..++||||.|.--.-..+-.+ .+++.|+++..++.+........++. +.
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~ 133 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIR 133 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhee
Confidence 3566778888888883 22345668999998876443333322 46778887776666665555443332 22
Q ss_pred EEEecccc-----CCCCCCCeeEEEEcCccc
Q 010592 152 IGVLGTIK-----MPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 152 ~~~~d~~~-----lp~~~~sfDlV~~~~~l~ 177 (506)
+....... +--..+.||+++|+..+|
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred EEeccCccccccccccccceeeeEecCCCcc
Confidence 22111111 112257899999998763
Done!