Query 010595
Match_columns 506
No_of_seqs 115 out of 128
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 02:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05278 PEARLI-4: Arabidopsis 100.0 2E-62 4.2E-67 481.3 23.9 216 289-504 50-269 (269)
2 KOG1987 Speckle-type POZ prote 99.6 1.1E-15 2.3E-20 147.6 12.4 121 325-460 156-278 (297)
3 PF05266 DUF724: Protein of un 98.1 0.00022 4.8E-09 68.5 16.8 127 361-491 47-180 (190)
4 PRK11637 AmiB activator; Provi 93.5 3.2 7E-05 43.7 16.1 124 355-493 127-256 (428)
5 smart00787 Spc7 Spc7 kinetocho 92.3 6.5 0.00014 40.9 15.9 64 438-501 207-270 (312)
6 PF08317 Spc7: Spc7 kinetochor 92.1 6.9 0.00015 40.3 15.7 38 440-477 214-251 (325)
7 COG4026 Uncharacterized protei 91.6 1.3 2.9E-05 45.0 9.7 58 440-497 147-204 (290)
8 PHA02562 46 endonuclease subun 89.8 7.7 0.00017 41.5 14.1 52 431-482 340-391 (562)
9 TIGR02680 conserved hypothetic 89.8 6.1 0.00013 48.1 14.7 52 378-429 214-265 (1353)
10 PF07889 DUF1664: Protein of u 89.8 5 0.00011 37.1 11.0 37 462-498 88-124 (126)
11 TIGR02168 SMC_prok_B chromosom 89.6 16 0.00035 41.7 17.1 21 322-345 112-132 (1179)
12 PRK11637 AmiB activator; Provi 89.0 14 0.0003 39.1 15.2 17 357-373 19-35 (428)
13 TIGR02169 SMC_prok_A chromosom 88.2 22 0.00048 40.9 17.1 47 322-371 110-167 (1164)
14 PRK04863 mukB cell division pr 88.1 16 0.00035 45.3 16.7 154 328-493 250-413 (1486)
15 PRK13182 racA polar chromosome 87.9 4.7 0.0001 38.8 9.9 134 345-485 4-147 (175)
16 PF10186 Atg14: UV radiation r 87.8 11 0.00024 36.7 12.5 15 401-415 34-48 (302)
17 PF09728 Taxilin: Myosin-like 87.6 5.9 0.00013 41.0 11.1 80 419-498 221-300 (309)
18 PF10168 Nup88: Nuclear pore c 87.5 5.3 0.00012 45.8 11.6 130 329-460 501-639 (717)
19 PRK02224 chromosome segregatio 87.3 14 0.00031 42.0 14.8 32 402-433 490-521 (880)
20 PRK01156 chromosome segregatio 87.1 11 0.00024 43.1 14.0 24 391-414 319-342 (895)
21 PF07889 DUF1664: Protein of u 86.5 11 0.00023 35.0 10.9 75 408-491 50-124 (126)
22 PHA02562 46 endonuclease subun 86.4 11 0.00024 40.2 12.7 95 398-494 178-279 (562)
23 PF02403 Seryl_tRNA_N: Seryl-t 86.1 14 0.0003 31.8 10.9 26 461-486 72-97 (108)
24 PF13851 GAS: Growth-arrest sp 85.7 36 0.00078 33.2 14.7 18 356-373 12-32 (201)
25 PF04740 LXG: LXG domain of WX 85.5 29 0.00063 32.6 13.7 54 355-410 48-104 (204)
26 smart00787 Spc7 Spc7 kinetocho 85.5 28 0.00061 36.3 14.7 50 435-484 211-260 (312)
27 PF09738 DUF2051: Double stran 85.5 12 0.00026 39.0 12.0 54 407-460 83-137 (302)
28 PF04156 IncA: IncA protein; 85.1 33 0.00071 32.0 16.0 57 435-491 130-186 (191)
29 PF10168 Nup88: Nuclear pore c 85.1 9.4 0.0002 43.9 12.0 57 433-489 563-619 (717)
30 COG4026 Uncharacterized protei 84.7 5.4 0.00012 40.8 8.8 8 469-476 197-204 (290)
31 PRK02224 chromosome segregatio 84.7 16 0.00035 41.6 13.6 33 336-369 129-161 (880)
32 COG3937 Uncharacterized conser 84.4 7.3 0.00016 35.5 8.6 38 442-479 68-106 (108)
33 PF10186 Atg14: UV radiation r 84.4 18 0.0004 35.1 12.1 24 394-417 63-86 (302)
34 cd04776 HTH_GnyR Helix-Turn-He 84.3 15 0.00032 32.7 10.6 32 379-411 35-66 (118)
35 KOG1962 B-cell receptor-associ 83.2 50 0.0011 33.3 14.7 76 407-482 130-205 (216)
36 COG1196 Smc Chromosome segrega 83.1 29 0.00063 41.6 15.3 83 345-434 144-226 (1163)
37 PF07888 CALCOCO1: Calcium bin 83.0 15 0.00032 41.4 12.1 22 463-484 213-234 (546)
38 TIGR00634 recN DNA repair prot 82.8 16 0.00035 40.2 12.2 93 321-417 108-205 (563)
39 COG1579 Zn-ribbon protein, pos 82.6 34 0.00073 34.9 13.5 19 464-482 125-143 (239)
40 PRK04863 mukB cell division pr 82.5 25 0.00054 43.8 14.7 17 401-417 307-323 (1486)
41 PRK05431 seryl-tRNA synthetase 82.4 11 0.00024 40.4 10.6 42 459-500 69-110 (425)
42 KOG2391 Vacuolar sorting prote 82.4 8.9 0.00019 41.0 9.6 58 435-495 221-278 (365)
43 KOG0995 Centromere-associated 82.3 54 0.0012 37.3 15.9 72 424-495 283-357 (581)
44 PF00261 Tropomyosin: Tropomyo 82.1 55 0.0012 32.3 15.1 7 480-486 200-206 (237)
45 PF15112 DUF4559: Domain of un 82.0 53 0.0012 34.7 14.9 60 333-400 138-199 (307)
46 TIGR01843 type_I_hlyD type I s 82.0 30 0.00066 35.1 13.1 40 466-505 242-281 (423)
47 PF12718 Tropomyosin_1: Tropom 82.0 37 0.0008 31.6 12.5 30 464-493 109-138 (143)
48 PF08317 Spc7: Spc7 kinetochor 81.9 54 0.0012 33.9 14.9 39 336-375 94-132 (325)
49 PF02994 Transposase_22: L1 tr 81.8 2 4.4E-05 45.1 4.8 42 457-498 145-186 (370)
50 KOG0250 DNA repair protein RAD 81.0 18 0.00039 43.5 12.3 38 453-490 419-456 (1074)
51 PRK09343 prefoldin subunit bet 80.3 27 0.0006 31.5 10.8 43 455-497 70-112 (121)
52 TIGR03185 DNA_S_dndD DNA sulfu 80.2 39 0.00083 37.9 14.2 24 474-497 266-289 (650)
53 COG1579 Zn-ribbon protein, pos 79.9 41 0.00089 34.2 13.0 39 434-472 102-140 (239)
54 COG1196 Smc Chromosome segrega 79.8 74 0.0016 38.3 17.1 8 406-413 791-798 (1163)
55 KOG4657 Uncharacterized conser 79.0 34 0.00074 35.0 12.0 36 451-486 88-123 (246)
56 PRK14148 heat shock protein Gr 78.8 3.9 8.4E-05 40.2 5.3 56 451-506 42-97 (195)
57 TIGR02168 SMC_prok_B chromosom 78.5 57 0.0012 37.4 15.0 10 402-411 825-834 (1179)
58 PF05600 DUF773: Protein of un 78.4 40 0.00088 37.3 13.5 31 351-382 345-375 (507)
59 PF06008 Laminin_I: Laminin Do 78.1 76 0.0017 31.5 14.9 13 379-391 118-130 (264)
60 PF10267 Tmemb_cc2: Predicted 77.6 1E+02 0.0022 33.6 15.8 40 437-476 278-318 (395)
61 KOG0962 DNA repair protein RAD 77.2 26 0.00056 43.1 12.3 23 406-428 170-192 (1294)
62 PRK00286 xseA exodeoxyribonucl 76.9 46 0.001 35.4 13.0 12 346-357 241-252 (438)
63 PF05266 DUF724: Protein of un 76.7 79 0.0017 30.9 14.8 18 462-479 165-182 (190)
64 PF00038 Filament: Intermediat 76.3 47 0.001 33.2 12.3 44 424-467 71-114 (312)
65 COG4942 Membrane-bound metallo 76.1 18 0.00039 39.5 9.8 16 461-476 92-107 (420)
66 KOG0996 Structural maintenance 76.0 81 0.0017 38.8 15.6 28 324-351 791-818 (1293)
67 COG2178 Predicted RNA-binding 75.9 17 0.00038 36.3 8.9 66 333-398 58-149 (204)
68 smart00502 BBC B-Box C-termina 75.6 47 0.001 27.8 12.5 33 463-495 72-104 (127)
69 PRK14140 heat shock protein Gr 75.5 5.5 0.00012 39.0 5.3 58 449-506 37-94 (191)
70 PRK04778 septation ring format 75.1 1.4E+02 0.0031 33.2 16.6 51 361-417 212-265 (569)
71 KOG0979 Structural maintenance 75.1 70 0.0015 38.7 14.7 57 357-419 198-259 (1072)
72 KOG3433 Protein involved in me 74.9 31 0.00067 34.4 10.2 65 435-499 77-145 (203)
73 KOG0963 Transcription factor/C 74.4 53 0.0011 37.7 13.1 106 387-496 235-343 (629)
74 PRK03598 putative efflux pump 74.1 11 0.00024 37.9 7.3 38 328-365 45-86 (331)
75 PF10473 CENP-F_leu_zip: Leuci 74.1 80 0.0017 29.8 14.0 30 432-461 49-78 (140)
76 TIGR00606 rad50 rad50. This fa 74.1 1.2E+02 0.0026 37.1 16.8 143 335-493 149-292 (1311)
77 PF11932 DUF3450: Protein of u 73.5 77 0.0017 31.4 12.8 67 430-496 51-117 (251)
78 PF03915 AIP3: Actin interacti 73.4 55 0.0012 35.8 12.6 22 151-174 3-24 (424)
79 PF09726 Macoilin: Transmembra 73.0 64 0.0014 37.3 13.6 23 396-418 462-484 (697)
80 KOG0964 Structural maintenance 72.8 23 0.0005 42.6 10.1 31 403-433 193-223 (1200)
81 TIGR00414 serS seryl-tRNA synt 72.4 38 0.00082 36.4 11.1 43 458-500 71-113 (418)
82 PLN02939 transferase, transfer 72.0 48 0.001 39.8 12.6 26 468-493 255-280 (977)
83 KOG0994 Extracellular matrix g 71.7 1.4E+02 0.0031 37.2 16.1 101 380-480 1535-1636(1758)
84 PF04111 APG6: Autophagy prote 71.7 21 0.00046 37.0 8.8 38 465-502 101-138 (314)
85 PF09730 BicD: Microtubule-ass 71.6 92 0.002 36.4 14.4 38 366-408 284-321 (717)
86 TIGR00606 rad50 rad50. This fa 71.1 1.4E+02 0.003 36.6 16.4 24 388-411 793-816 (1311)
87 PF10267 Tmemb_cc2: Predicted 71.0 47 0.001 36.1 11.4 109 379-497 207-318 (395)
88 PF11559 ADIP: Afadin- and alp 71.0 83 0.0018 28.7 14.2 18 357-374 31-48 (151)
89 PRK14160 heat shock protein Gr 71.0 18 0.0004 36.0 7.8 53 454-506 66-118 (211)
90 COG0419 SbcC ATPase involved i 71.0 71 0.0015 37.3 13.6 87 398-488 523-618 (908)
91 PRK10869 recombination and rep 70.9 85 0.0018 35.0 13.6 19 403-421 298-316 (553)
92 PF05278 PEARLI-4: Arabidopsis 70.8 52 0.0011 34.2 11.2 41 442-482 200-240 (269)
93 PF03148 Tektin: Tektin family 70.5 1.3E+02 0.0028 32.0 14.4 92 336-432 201-293 (384)
94 TIGR03185 DNA_S_dndD DNA sulfu 70.2 47 0.001 37.2 11.7 38 447-484 426-463 (650)
95 KOG1029 Endocytic adaptor prot 70.0 39 0.00085 40.0 11.0 13 435-447 396-408 (1118)
96 PLN02320 seryl-tRNA synthetase 70.0 51 0.0011 36.8 11.6 40 461-500 135-174 (502)
97 PF07200 Mod_r: Modifier of ru 69.9 81 0.0018 28.6 11.2 62 435-496 55-129 (150)
98 PF09731 Mitofilin: Mitochondr 69.9 1.2E+02 0.0027 33.3 14.5 72 322-394 210-283 (582)
99 PRK10884 SH3 domain-containing 69.7 42 0.00092 33.1 10.0 9 402-410 76-84 (206)
100 PRK14161 heat shock protein Gr 69.6 8.9 0.00019 37.1 5.2 51 456-506 26-76 (178)
101 TIGR02977 phageshock_pspA phag 69.1 1.2E+02 0.0026 29.7 14.0 17 405-421 56-72 (219)
102 PF14942 Muted: Organelle biog 68.8 1.1E+02 0.0023 29.0 14.0 41 438-478 103-144 (145)
103 PF10046 BLOC1_2: Biogenesis o 68.5 80 0.0017 27.5 12.2 52 444-495 47-98 (99)
104 KOG0250 DNA repair protein RAD 68.2 1.3E+02 0.0028 36.7 14.9 48 450-497 373-428 (1074)
105 KOG0933 Structural maintenance 68.1 98 0.0021 37.7 13.8 28 383-410 690-717 (1174)
106 PF10146 zf-C4H2: Zinc finger- 67.8 94 0.002 31.4 12.0 19 401-419 8-26 (230)
107 KOG0977 Nuclear envelope prote 67.7 1E+02 0.0022 35.1 13.3 51 441-491 140-190 (546)
108 PRK04778 septation ring format 67.0 1.1E+02 0.0023 34.1 13.4 9 381-389 342-350 (569)
109 COG3883 Uncharacterized protei 66.8 1.5E+02 0.0033 30.8 13.5 15 359-373 3-17 (265)
110 PF12777 MT: Microtubule-bindi 66.5 22 0.00047 36.9 7.7 41 461-501 268-315 (344)
111 KOG0996 Structural maintenance 66.4 62 0.0014 39.7 12.0 38 450-487 536-573 (1293)
112 PF10212 TTKRSYEDQ: Predicted 66.4 1.5E+02 0.0032 33.6 14.2 103 356-490 412-514 (518)
113 TIGR02449 conserved hypothetic 66.1 59 0.0013 27.2 8.6 61 404-477 3-63 (65)
114 KOG0971 Microtubule-associated 65.5 33 0.00071 41.2 9.3 11 74-84 55-65 (1243)
115 PF00038 Filament: Intermediat 65.4 1.4E+02 0.003 29.9 12.8 6 471-476 125-130 (312)
116 PRK12704 phosphodiesterase; Pr 65.3 96 0.0021 34.5 12.6 17 480-496 131-147 (520)
117 PLN02678 seryl-tRNA synthetase 65.2 70 0.0015 35.1 11.4 37 460-496 75-111 (448)
118 TIGR00237 xseA exodeoxyribonuc 65.2 1E+02 0.0022 33.3 12.5 44 396-439 279-322 (432)
119 KOG1003 Actin filament-coating 65.1 1.6E+02 0.0035 29.7 13.9 65 433-497 72-136 (205)
120 KOG0976 Rho/Rac1-interacting s 64.7 1.8E+02 0.0039 35.1 14.8 22 456-477 386-407 (1265)
121 PRK14143 heat shock protein Gr 64.6 13 0.00029 37.5 5.5 43 464-506 82-124 (238)
122 KOG0804 Cytoplasmic Zn-finger 64.5 1.7E+02 0.0038 32.7 14.1 14 329-342 325-338 (493)
123 PF14257 DUF4349: Domain of un 64.5 50 0.0011 32.6 9.4 32 447-478 160-191 (262)
124 KOG0964 Structural maintenance 64.4 42 0.00091 40.5 10.0 39 450-488 426-464 (1200)
125 COG0216 PrfA Protein chain rel 64.3 30 0.00064 37.2 8.1 20 456-475 83-102 (363)
126 PRK11519 tyrosine kinase; Prov 64.2 2.1E+02 0.0046 32.8 15.3 22 347-368 230-251 (719)
127 PF09726 Macoilin: Transmembra 63.8 76 0.0016 36.7 11.8 19 403-421 490-508 (697)
128 cd01109 HTH_YyaN Helix-Turn-He 63.7 45 0.00098 29.0 8.0 58 345-406 4-63 (113)
129 PRK00106 hypothetical protein; 63.4 90 0.002 35.2 12.0 32 467-498 133-164 (535)
130 KOG0933 Structural maintenance 63.0 2.5E+02 0.0055 34.4 15.8 7 371-377 729-735 (1174)
131 PF08614 ATG16: Autophagy prot 63.0 1.2E+02 0.0027 28.9 11.5 57 433-489 128-184 (194)
132 KOG0243 Kinesin-like protein [ 62.5 1.8E+02 0.0039 35.5 14.7 110 344-453 383-508 (1041)
133 PRK14154 heat shock protein Gr 62.4 15 0.00033 36.5 5.4 50 457-506 60-109 (208)
134 PF12240 Angiomotin_C: Angiomo 62.3 78 0.0017 31.8 10.1 57 440-497 29-97 (205)
135 PF15290 Syntaphilin: Golgi-lo 61.9 46 0.00099 35.1 8.8 27 450-476 118-144 (305)
136 cd07618 BAR_Rich1 The Bin/Amph 61.1 1.1E+02 0.0024 31.2 11.2 37 376-412 110-146 (246)
137 cd07596 BAR_SNX The Bin/Amphip 61.1 1.4E+02 0.0029 27.5 12.6 22 461-482 150-171 (218)
138 KOG2398 Predicted proline-seri 61.0 1E+02 0.0022 35.4 12.0 50 441-496 148-198 (611)
139 PF10473 CENP-F_leu_zip: Leuci 61.0 1.5E+02 0.0032 28.0 11.3 12 465-476 89-100 (140)
140 COG4477 EzrA Negative regulato 60.9 2.7E+02 0.0058 31.9 14.9 53 360-417 210-264 (570)
141 KOG4674 Uncharacterized conser 60.8 1.3E+02 0.0028 38.7 13.6 116 352-471 1173-1300(1822)
142 PF05816 TelA: Toxic anion res 60.6 2.2E+02 0.0047 29.7 13.8 114 343-460 12-130 (333)
143 KOG0982 Centrosomal protein Nu 60.6 93 0.002 34.7 11.2 35 464-498 298-332 (502)
144 KOG0977 Nuclear envelope prote 60.0 61 0.0013 36.7 10.0 32 458-489 136-167 (546)
145 PRK14127 cell division protein 59.9 73 0.0016 29.0 8.8 18 456-473 51-68 (109)
146 PRK14139 heat shock protein Gr 59.5 20 0.00042 35.1 5.5 42 464-505 47-88 (185)
147 PF10037 MRP-S27: Mitochondria 59.5 2.4E+02 0.0052 31.1 14.1 122 358-482 257-391 (429)
148 cd07619 BAR_Rich2 The Bin/Amph 59.3 1.9E+02 0.0042 29.6 12.6 36 377-412 111-146 (248)
149 PRK14158 heat shock protein Gr 59.2 20 0.00044 35.2 5.6 48 459-506 50-97 (194)
150 PF07246 Phlebovirus_NSM: Phle 59.1 77 0.0017 32.9 9.8 38 344-382 56-93 (264)
151 PRK14153 heat shock protein Gr 58.9 17 0.00036 35.9 4.9 50 457-506 41-90 (194)
152 KOG0018 Structural maintenance 58.8 97 0.0021 37.8 11.7 53 440-492 702-754 (1141)
153 PRK14155 heat shock protein Gr 58.8 14 0.0003 36.7 4.4 43 464-506 28-70 (208)
154 PF07106 TBPIP: Tat binding pr 58.7 44 0.00096 31.1 7.5 12 381-392 30-41 (169)
155 KOG0979 Structural maintenance 58.6 3.8E+02 0.0082 32.9 16.3 71 322-397 117-187 (1072)
156 PF13870 DUF4201: Domain of un 58.5 1.6E+02 0.0035 27.6 15.2 68 435-502 77-144 (177)
157 cd00632 Prefoldin_beta Prefold 58.5 1.2E+02 0.0027 26.2 10.2 13 385-397 28-40 (105)
158 COG2433 Uncharacterized conser 58.3 1.1E+02 0.0025 35.2 11.7 11 350-360 335-345 (652)
159 PF12777 MT: Microtubule-bindi 58.2 33 0.00072 35.6 7.2 51 444-494 230-280 (344)
160 KOG4466 Component of histone d 58.0 88 0.0019 32.9 10.0 47 386-432 25-75 (291)
161 PF05010 TACC: Transforming ac 57.8 2.1E+02 0.0045 28.6 16.7 58 361-420 48-109 (207)
162 KOG4674 Uncharacterized conser 57.6 2.2E+02 0.0048 36.8 14.8 158 321-484 20-185 (1822)
163 cd04770 HTH_HMRTR Helix-Turn-H 57.4 65 0.0014 28.2 7.9 61 346-410 5-67 (123)
164 TIGR00414 serS seryl-tRNA synt 57.3 1.1E+02 0.0024 33.0 11.1 13 464-476 84-96 (418)
165 PRK05771 V-type ATP synthase s 57.3 56 0.0012 36.6 9.2 20 404-423 46-65 (646)
166 KOG0976 Rho/Rac1-interacting s 57.3 1.3E+02 0.0028 36.2 12.1 23 395-417 338-360 (1265)
167 PF02403 Seryl_tRNA_N: Seryl-t 56.9 1.3E+02 0.0028 25.9 10.9 31 465-495 69-99 (108)
168 KOG0971 Microtubule-associated 56.7 1.9E+02 0.0041 35.2 13.3 37 460-496 494-530 (1243)
169 PF12718 Tropomyosin_1: Tropom 56.5 1.7E+02 0.0037 27.3 13.6 30 463-492 101-130 (143)
170 PF14193 DUF4315: Domain of un 56.5 38 0.00082 29.4 6.1 25 454-478 6-30 (83)
171 PF06160 EzrA: Septation ring 56.5 1.1E+02 0.0024 34.1 11.3 54 443-496 380-433 (560)
172 PF05911 DUF869: Plant protein 56.2 1.2E+02 0.0026 35.7 11.9 100 387-486 10-115 (769)
173 KOG2264 Exostosin EXT1L [Signa 56.2 53 0.0012 37.8 8.7 17 355-371 24-40 (907)
174 PF08614 ATG16: Autophagy prot 56.1 39 0.00086 32.3 6.8 47 450-496 124-170 (194)
175 PRK10361 DNA recombination pro 56.0 1.4E+02 0.0031 33.2 11.9 12 485-496 141-152 (475)
176 PF04912 Dynamitin: Dynamitin 55.8 2.8E+02 0.006 29.4 13.7 18 459-476 346-363 (388)
177 KOG3976 Mitochondrial F1F0-ATP 55.7 2.6E+02 0.0056 29.0 14.1 76 379-466 120-197 (247)
178 PF10234 Cluap1: Clusterin-ass 55.7 1.6E+02 0.0035 30.6 11.5 34 384-417 117-150 (267)
179 TIGR02449 conserved hypothetic 55.6 70 0.0015 26.8 7.3 51 443-496 4-54 (65)
180 PF09278 MerR-DNA-bind: MerR, 55.6 84 0.0018 24.3 7.5 60 390-459 4-63 (65)
181 PRK14162 heat shock protein Gr 55.5 26 0.00055 34.5 5.6 49 458-506 48-96 (194)
182 PRK10869 recombination and rep 55.0 1.5E+02 0.0033 33.0 12.0 12 295-306 190-201 (553)
183 PRK14151 heat shock protein Gr 54.9 22 0.00047 34.4 4.9 37 468-504 39-75 (176)
184 COG2433 Uncharacterized conser 54.7 1.3E+02 0.0029 34.7 11.5 13 335-347 359-371 (652)
185 KOG3564 GTPase-activating prot 54.7 1E+02 0.0022 34.9 10.4 76 418-493 32-107 (604)
186 PF03310 Cauli_DNA-bind: Cauli 54.6 33 0.00072 31.9 5.8 9 409-417 4-12 (121)
187 PF05615 THOC7: Tho complex su 54.5 1.7E+02 0.0036 26.5 11.3 49 361-411 20-68 (139)
188 PRK10361 DNA recombination pro 54.5 2.5E+02 0.0054 31.5 13.4 24 469-492 98-121 (475)
189 PF03961 DUF342: Protein of un 54.5 88 0.0019 33.6 9.8 18 400-417 326-343 (451)
190 PRK14156 heat shock protein Gr 54.5 51 0.0011 32.1 7.3 49 458-506 36-84 (177)
191 TIGR02680 conserved hypothetic 54.2 4.3E+02 0.0094 32.9 16.5 6 328-333 157-162 (1353)
192 PF10458 Val_tRNA-synt_C: Valy 54.1 49 0.0011 26.7 6.1 51 440-490 9-66 (66)
193 PF14735 HAUS4: HAUS augmin-li 54.1 2.5E+02 0.0055 28.5 13.9 54 355-418 104-157 (238)
194 COG1382 GimC Prefoldin, chaper 54.0 1.5E+02 0.0033 27.5 9.9 44 454-497 68-111 (119)
195 TIGR02338 gimC_beta prefoldin, 53.7 1.6E+02 0.0034 25.9 11.2 42 455-496 66-107 (110)
196 KOG0018 Structural maintenance 53.6 82 0.0018 38.3 10.1 37 461-497 854-890 (1141)
197 PRK00409 recombination and DNA 53.2 2E+02 0.0044 33.6 13.0 24 324-347 439-462 (782)
198 PF09730 BicD: Microtubule-ass 53.2 1.5E+02 0.0033 34.6 11.9 42 450-491 77-118 (717)
199 PRK14163 heat shock protein Gr 53.1 27 0.00058 35.0 5.3 43 464-506 55-97 (214)
200 PF04799 Fzo_mitofusin: fzo-li 53.0 1E+02 0.0022 30.2 9.0 53 431-483 112-164 (171)
201 PF07888 CALCOCO1: Calcium bin 52.6 2E+02 0.0044 32.7 12.4 16 194-209 36-51 (546)
202 KOG0994 Extracellular matrix g 52.5 3.6E+02 0.0077 34.0 14.8 15 383-397 1611-1625(1758)
203 COG1775 HgdB Benzoyl-CoA reduc 52.3 73 0.0016 34.6 8.7 55 354-408 133-187 (379)
204 cd07651 F-BAR_PombeCdc15_like 52.1 2.4E+02 0.0052 27.6 13.7 30 461-496 187-216 (236)
205 PF09602 PhaP_Bmeg: Polyhydrox 51.9 2.4E+02 0.0053 27.6 11.7 50 433-482 53-104 (165)
206 PF04286 DUF445: Protein of un 51.8 2.6E+02 0.0056 27.9 15.4 60 355-415 181-245 (367)
207 PRK03947 prefoldin subunit alp 51.8 1.3E+02 0.0029 27.0 9.2 15 384-398 37-51 (140)
208 PF07106 TBPIP: Tat binding pr 51.8 61 0.0013 30.1 7.2 23 467-489 113-135 (169)
209 PLN02939 transferase, transfer 51.6 2.3E+02 0.0049 34.5 13.2 118 380-497 173-306 (977)
210 PF07544 Med9: RNA polymerase 51.5 56 0.0012 27.7 6.3 21 397-417 24-44 (83)
211 PF05983 Med7: MED7 protein; 51.5 65 0.0014 30.6 7.4 18 360-377 82-99 (162)
212 PF12128 DUF3584: Protein of u 51.4 5.3E+02 0.012 31.6 16.5 36 394-429 761-799 (1201)
213 PF03112 DUF244: Uncharacteriz 51.2 2.4E+02 0.0053 27.4 11.9 77 394-484 37-120 (158)
214 KOG4657 Uncharacterized conser 51.2 3E+02 0.0065 28.5 15.0 45 432-476 90-134 (246)
215 KOG0161 Myosin class II heavy 51.0 2.5E+02 0.0055 36.5 14.1 51 444-494 1085-1135(1930)
216 PF12329 TMF_DNA_bd: TATA elem 50.8 1.5E+02 0.0032 24.9 8.8 22 464-485 48-69 (74)
217 cd04785 HTH_CadR-PbrR-like Hel 50.8 84 0.0018 28.0 7.7 29 378-407 36-64 (126)
218 cd07595 BAR_RhoGAP_Rich-like T 50.7 2.1E+02 0.0045 29.0 11.2 38 376-413 110-147 (244)
219 PF02009 Rifin_STEVOR: Rifin/s 50.5 15 0.00032 38.4 3.2 41 420-460 31-71 (299)
220 COG3883 Uncharacterized protei 50.4 1.8E+02 0.0039 30.3 10.8 25 442-466 73-97 (265)
221 KOG0804 Cytoplasmic Zn-finger 50.2 1.9E+02 0.004 32.6 11.4 10 200-209 135-144 (493)
222 KOG3850 Predicted membrane pro 50.1 2.9E+02 0.0064 30.6 12.7 24 455-478 345-368 (455)
223 PF10018 Med4: Vitamin-D-recep 49.9 99 0.0021 29.6 8.5 52 409-460 10-61 (188)
224 cd07620 BAR_SH3BP1 The Bin/Amp 49.9 2.1E+02 0.0046 29.7 11.2 84 377-460 111-210 (257)
225 PRK12705 hypothetical protein; 49.8 2.3E+02 0.005 31.9 12.3 6 404-409 23-28 (508)
226 KOG4302 Microtubule-associated 49.7 3.1E+02 0.0068 32.0 13.5 119 354-485 40-183 (660)
227 COG5185 HEC1 Protein involved 49.6 2.7E+02 0.0058 31.7 12.5 62 411-472 285-360 (622)
228 PRK14144 heat shock protein Gr 49.3 35 0.00076 33.8 5.4 52 455-506 51-102 (199)
229 PF06160 EzrA: Septation ring 49.3 4.2E+02 0.0092 29.7 15.6 51 362-417 209-261 (560)
230 PRK14157 heat shock protein Gr 49.3 28 0.0006 35.3 4.8 38 468-505 96-133 (227)
231 KOG3809 Microtubule-binding pr 49.1 4.4E+02 0.0096 29.8 20.5 117 330-479 439-576 (583)
232 PF06008 Laminin_I: Laminin Do 49.0 2.8E+02 0.0062 27.6 15.6 19 379-397 148-166 (264)
233 KOG0962 DNA repair protein RAD 48.7 2.1E+02 0.0045 35.8 12.5 111 386-496 787-904 (1294)
234 PLN02320 seryl-tRNA synthetase 48.6 1.1E+02 0.0025 34.2 9.7 11 403-413 69-79 (502)
235 PF05384 DegS: Sensor protein 48.4 2.6E+02 0.0056 26.9 14.5 25 403-427 29-54 (159)
236 cd07616 BAR_Endophilin_B1 The 48.3 2.5E+02 0.0055 28.5 11.3 35 377-411 123-157 (229)
237 PF05667 DUF812: Protein of un 48.0 4.2E+02 0.009 30.4 14.1 14 20-33 35-48 (594)
238 PRK13428 F0F1 ATP synthase sub 47.9 3.9E+02 0.0084 29.2 13.4 32 369-400 17-48 (445)
239 cd01108 HTH_CueR Helix-Turn-He 47.7 96 0.0021 27.7 7.6 30 378-408 36-65 (127)
240 PF06705 SF-assemblin: SF-asse 47.4 3E+02 0.0064 27.3 14.4 95 379-477 65-160 (247)
241 PRK09841 cryptic autophosphory 47.3 92 0.002 35.6 9.0 15 403-417 269-283 (726)
242 KOG4643 Uncharacterized coiled 47.2 3.3E+02 0.0073 33.5 13.5 47 444-490 469-515 (1195)
243 PRK13729 conjugal transfer pil 47.2 64 0.0014 36.0 7.5 29 464-492 98-126 (475)
244 KOG1029 Endocytic adaptor prot 46.9 1.9E+02 0.0042 34.7 11.4 32 382-414 391-422 (1118)
245 PF14915 CCDC144C: CCDC144C pr 46.6 3.7E+02 0.0081 28.7 12.5 35 461-495 212-246 (305)
246 PF15066 CAGE1: Cancer-associa 46.4 2.6E+02 0.0057 31.6 11.8 37 321-358 263-301 (527)
247 PRK14141 heat shock protein Gr 46.3 33 0.00072 34.2 4.8 34 470-503 52-85 (209)
248 PF13874 Nup54: Nucleoporin co 46.1 1E+02 0.0022 28.3 7.6 32 464-495 66-97 (141)
249 KOG0995 Centromere-associated 46.0 3.7E+02 0.0081 31.0 13.1 95 384-481 273-371 (581)
250 KOG2196 Nuclear porin [Nuclear 46.0 2.9E+02 0.0063 28.8 11.3 141 327-491 94-247 (254)
251 KOG4809 Rab6 GTPase-interactin 45.8 2.8E+02 0.0061 32.0 12.1 60 434-495 386-446 (654)
252 PLN02678 seryl-tRNA synthetase 45.8 1.9E+02 0.0041 31.9 10.7 86 393-482 19-104 (448)
253 KOG4403 Cell surface glycoprot 45.7 5E+02 0.011 29.4 14.1 100 355-460 211-327 (575)
254 PRK14146 heat shock protein Gr 45.6 38 0.00082 33.8 5.1 51 456-506 61-111 (215)
255 PF02601 Exonuc_VII_L: Exonucl 45.5 2.8E+02 0.0062 28.1 11.4 14 346-359 124-137 (319)
256 PRK14145 heat shock protein Gr 45.5 45 0.00097 33.0 5.5 49 458-506 54-102 (196)
257 PF07798 DUF1640: Protein of u 45.4 2.7E+02 0.0059 26.4 14.3 17 381-397 16-32 (177)
258 KOG4552 Vitamin-D-receptor int 45.4 3.7E+02 0.0079 27.8 12.5 51 404-461 50-100 (272)
259 TIGR01069 mutS2 MutS2 family p 45.3 2E+02 0.0044 33.6 11.4 25 323-347 433-457 (771)
260 TIGR01477 RIFIN variant surfac 45.2 46 0.00099 35.8 5.9 40 421-460 55-94 (353)
261 KOG1176 Acyl-CoA synthetase [L 45.2 16 0.00034 40.7 2.6 43 309-354 420-463 (537)
262 PF10805 DUF2730: Protein of u 44.9 1.7E+02 0.0037 25.9 8.6 43 433-475 47-91 (106)
263 PF06156 DUF972: Protein of un 44.7 1.3E+02 0.0027 27.2 7.8 11 419-429 6-16 (107)
264 COG1842 PspA Phage shock prote 44.6 3.5E+02 0.0075 27.3 15.1 62 358-421 7-72 (225)
265 TIGR00763 lon ATP-dependent pr 44.4 1.7E+02 0.0036 33.9 10.6 40 383-422 175-214 (775)
266 TIGR02047 CadR-PbrR Cd(II)/Pb( 44.3 1.2E+02 0.0026 27.2 7.7 29 376-405 34-62 (127)
267 cd00632 Prefoldin_beta Prefold 44.2 1.8E+02 0.0039 25.2 8.5 31 464-494 71-101 (105)
268 PRK10476 multidrug resistance 44.1 1.6E+02 0.0034 30.1 9.4 21 485-505 198-218 (346)
269 cd04777 HTH_MerR-like_sg1 Heli 44.0 1.4E+02 0.0031 25.7 7.8 27 379-406 35-61 (107)
270 PF10779 XhlA: Haemolysin XhlA 44.0 97 0.0021 25.4 6.4 13 465-477 36-48 (71)
271 KOG0796 Spliceosome subunit [R 43.9 3.6E+02 0.0077 29.0 12.0 66 362-431 84-152 (319)
272 TIGR02051 MerR Hg(II)-responsi 43.9 2.1E+02 0.0046 25.5 9.1 58 346-407 4-63 (124)
273 KOG2441 mRNA splicing factor/p 43.7 1.5E+02 0.0032 33.0 9.4 58 440-498 312-382 (506)
274 COG1340 Uncharacterized archae 43.6 4.3E+02 0.0092 28.1 15.3 30 464-493 208-237 (294)
275 PRK13169 DNA replication intia 43.5 1.3E+02 0.0028 27.4 7.7 46 417-462 4-49 (110)
276 KOG2077 JNK/SAPK-associated pr 43.5 1.7E+02 0.0037 33.9 10.1 50 362-417 303-352 (832)
277 PRK14127 cell division protein 43.2 1.4E+02 0.0031 27.2 7.9 12 467-478 89-100 (109)
278 PF10046 BLOC1_2: Biogenesis o 43.1 2.3E+02 0.0049 24.7 10.4 62 423-488 37-98 (99)
279 PF00042 Globin: Globin plant 42.9 69 0.0015 26.5 5.5 40 334-373 21-74 (110)
280 cd01111 HTH_MerD Helix-Turn-He 42.9 2.2E+02 0.0048 25.0 8.9 26 378-404 36-61 (107)
281 PF10243 MIP-T3: Microtubule-b 42.8 8.1 0.00018 42.4 0.0 125 330-480 390-533 (539)
282 cd04784 HTH_CadR-PbrR Helix-Tu 42.7 1.3E+02 0.0029 26.6 7.6 28 377-405 35-62 (127)
283 PRK14150 heat shock protein Gr 42.4 55 0.0012 32.0 5.5 40 467-506 56-95 (193)
284 PF12128 DUF3584: Protein of u 42.4 5.7E+02 0.012 31.4 14.9 38 335-372 366-403 (1201)
285 PF05781 MRVI1: MRVI1 protein; 42.3 2.2E+02 0.0049 32.4 10.8 28 380-411 187-216 (538)
286 KOG0050 mRNA splicing protein 42.2 3.8E+02 0.0082 30.9 12.3 63 355-420 456-518 (617)
287 COG3879 Uncharacterized protei 42.1 1.2E+02 0.0026 31.3 8.1 67 418-485 34-104 (247)
288 PF06005 DUF904: Protein of un 41.9 2.1E+02 0.0046 24.1 10.0 17 456-472 53-69 (72)
289 cd04787 HTH_HMRTR_unk Helix-Tu 41.9 1.7E+02 0.0037 26.3 8.3 26 379-405 37-62 (133)
290 PLN02372 violaxanthin de-epoxi 41.9 2.8E+02 0.006 31.0 11.1 28 461-488 423-450 (455)
291 PF07544 Med9: RNA polymerase 41.9 83 0.0018 26.7 5.9 35 459-493 48-82 (83)
292 PF13870 DUF4201: Domain of un 41.8 3E+02 0.0065 25.8 10.7 25 451-475 100-124 (177)
293 TIGR02132 phaR_Bmeg polyhydrox 41.8 2.9E+02 0.0064 27.6 10.3 68 382-452 70-138 (189)
294 PF05911 DUF869: Plant protein 41.6 6.8E+02 0.015 29.8 15.9 28 468-495 664-691 (769)
295 PF05667 DUF812: Protein of un 41.2 6.1E+02 0.013 29.2 14.1 11 79-89 37-47 (594)
296 KOG3427 Polyglutamine tract-bi 41.1 8.9 0.00019 38.5 -0.0 53 108-165 73-125 (222)
297 KOG4797 Transcriptional regula 41.0 96 0.0021 28.8 6.5 31 455-485 66-96 (123)
298 KOG3192 Mitochondrial J-type c 41.0 1.6E+02 0.0034 28.9 8.2 33 450-486 116-148 (168)
299 PF11559 ADIP: Afadin- and alp 40.9 2.8E+02 0.0061 25.2 15.0 57 435-491 73-129 (151)
300 PF10174 Cast: RIM-binding pro 40.9 4E+02 0.0087 31.6 12.9 27 434-460 342-368 (775)
301 KOG0978 E3 ubiquitin ligase in 40.8 5.1E+02 0.011 30.6 13.5 10 338-347 356-365 (698)
302 PRK06569 F0F1 ATP synthase sub 40.8 3.4E+02 0.0074 26.1 12.2 9 409-417 34-42 (155)
303 PF15233 SYCE1: Synaptonemal c 40.6 3.3E+02 0.0072 26.0 13.0 93 363-460 8-110 (134)
304 PF04849 HAP1_N: HAP1 N-termin 40.6 3.6E+02 0.0078 28.7 11.4 87 401-487 160-265 (306)
305 KOG4438 Centromere-associated 40.6 3.8E+02 0.0083 29.9 11.9 101 357-493 124-239 (446)
306 PF15290 Syntaphilin: Golgi-lo 40.6 1.7E+02 0.0038 31.0 9.0 20 472-491 119-138 (305)
307 PRK10227 DNA-binding transcrip 40.2 1.4E+02 0.0031 27.3 7.6 28 377-405 35-62 (135)
308 KOG4568 Cytoskeleton-associate 40.1 1.3E+02 0.0028 34.9 8.8 82 403-484 580-661 (664)
309 cd04783 HTH_MerR1 Helix-Turn-H 40.1 1.8E+02 0.0039 25.8 8.1 26 378-404 36-61 (126)
310 PF12325 TMF_TATA_bd: TATA ele 39.6 3.1E+02 0.0067 25.3 9.9 85 386-470 18-110 (120)
311 TIGR02044 CueR Cu(I)-responsiv 39.5 1.5E+02 0.0033 26.4 7.5 59 345-407 4-64 (127)
312 KOG1003 Actin filament-coating 39.4 3E+02 0.0065 27.9 10.1 31 385-418 117-147 (205)
313 PRK10698 phage shock protein P 39.3 3.4E+02 0.0075 26.9 10.6 92 415-506 86-188 (222)
314 cd04769 HTH_MerR2 Helix-Turn-H 39.2 1.1E+02 0.0024 26.9 6.5 71 379-460 36-107 (116)
315 PF05701 WEMBL: Weak chloropla 39.2 5.8E+02 0.013 28.4 13.7 19 395-413 219-237 (522)
316 KOG0161 Myosin class II heavy 39.2 7.6E+02 0.016 32.5 15.6 34 385-418 1313-1346(1930)
317 PF04949 Transcrip_act: Transc 39.0 2.3E+02 0.0051 27.6 8.9 21 441-461 111-131 (159)
318 PF09731 Mitofilin: Mitochondr 38.8 5.8E+02 0.012 28.2 14.7 10 368-377 234-243 (582)
319 PRK14147 heat shock protein Gr 38.7 53 0.0012 31.6 4.8 28 440-467 30-57 (172)
320 PRK13729 conjugal transfer pil 38.5 1.3E+02 0.0028 33.7 8.2 50 444-493 71-120 (475)
321 PRK05431 seryl-tRNA synthetase 38.5 2.4E+02 0.0052 30.5 10.1 18 400-417 41-58 (425)
322 KOG3876 Arfaptin and related p 38.4 3.7E+02 0.008 28.7 10.9 64 343-414 175-247 (341)
323 PF05384 DegS: Sensor protein 38.3 3.7E+02 0.0081 25.9 12.2 13 405-417 59-71 (159)
324 PF07200 Mod_r: Modifier of ru 37.9 3.1E+02 0.0067 24.8 9.6 16 378-393 1-16 (150)
325 TIGR01612 235kDa-fam reticuloc 37.9 4.6E+02 0.01 35.2 13.4 63 432-494 555-617 (2757)
326 cd04779 HTH_MerR-like_sg4 Heli 37.6 3.3E+02 0.0072 25.1 9.8 25 379-404 36-60 (134)
327 cd07594 BAR_Endophilin_B The B 37.6 2.8E+02 0.006 28.0 9.7 35 377-411 123-157 (229)
328 PF11338 DUF3140: Protein of u 37.5 40 0.00088 30.0 3.5 30 368-398 42-71 (92)
329 COG1382 GimC Prefoldin, chaper 37.4 2.7E+02 0.006 25.9 8.9 24 451-474 86-109 (119)
330 PRK01194 V-type ATP synthase s 37.1 3.9E+02 0.0084 25.7 12.5 68 430-497 26-97 (185)
331 PF11932 DUF3450: Protein of u 37.0 4.3E+02 0.0093 26.2 11.9 36 418-453 53-88 (251)
332 PF13166 AAA_13: AAA domain 37.0 6.4E+02 0.014 28.2 15.7 44 453-496 428-471 (712)
333 PF04012 PspA_IM30: PspA/IM30 36.9 3.9E+02 0.0084 25.7 10.6 94 406-499 35-134 (221)
334 KOG4603 TBP-1 interacting prot 36.9 2.4E+02 0.0052 28.2 8.9 29 451-479 118-146 (201)
335 KOG2391 Vacuolar sorting prote 36.6 1.7E+02 0.0038 31.7 8.5 29 432-460 239-267 (365)
336 PRK13752 putative transcriptio 36.5 2.6E+02 0.0056 25.9 8.7 30 378-408 43-72 (144)
337 cd04782 HTH_BltR Helix-Turn-He 36.4 1.7E+02 0.0036 25.1 7.0 26 378-404 36-61 (97)
338 PF12999 PRKCSH-like: Glucosid 36.4 1.9E+02 0.0041 28.5 8.1 14 466-479 156-169 (176)
339 PRK14164 heat shock protein Gr 36.4 50 0.0011 33.2 4.3 26 441-466 83-108 (218)
340 PF05529 Bap31: B-cell recepto 36.1 2.3E+02 0.0051 26.8 8.6 16 463-478 175-190 (192)
341 cd04786 HTH_MerR-like_sg7 Heli 35.8 1.6E+02 0.0034 26.9 7.1 31 379-410 37-67 (131)
342 cd04789 HTH_Cfa Helix-Turn-Hel 35.7 2.5E+02 0.0054 24.3 8.0 26 378-404 36-61 (102)
343 cd01107 HTH_BmrR Helix-Turn-He 35.5 1.8E+02 0.004 25.2 7.2 67 378-460 37-103 (108)
344 TIGR02338 gimC_beta prefoldin, 35.5 3.1E+02 0.0067 24.1 8.8 9 464-472 96-104 (110)
345 KOG0104 Molecular chaperones G 35.4 5E+02 0.011 31.3 12.4 30 377-412 650-679 (902)
346 KOG1772 Vacuolar H+-ATPase V1 35.3 3.6E+02 0.0079 24.9 10.1 60 424-486 31-95 (108)
347 PF09403 FadA: Adhesion protei 35.1 2.8E+02 0.006 25.9 8.6 32 466-497 89-120 (126)
348 PRK14159 heat shock protein Gr 34.8 62 0.0013 31.4 4.6 41 465-505 39-79 (176)
349 TIGR01837 PHA_granule_1 poly(h 34.8 2.1E+02 0.0045 25.9 7.6 33 463-495 81-114 (118)
350 PF08580 KAR9: Yeast cortical 34.7 4.8E+02 0.01 30.4 12.2 139 363-506 167-365 (683)
351 PF06248 Zw10: Centromere/kine 34.7 2.2E+02 0.0048 31.7 9.3 87 332-421 26-113 (593)
352 PF03999 MAP65_ASE1: Microtubu 34.6 13 0.00028 41.6 0.0 126 361-501 167-303 (619)
353 COG0466 Lon ATP-dependent Lon 34.6 4.1E+02 0.0089 31.6 11.6 10 297-306 90-99 (782)
354 PF13805 Pil1: Eisosome compon 34.5 5.6E+02 0.012 26.8 12.5 46 441-490 147-192 (271)
355 cd01040 globin Globins are hem 34.5 2.1E+02 0.0045 24.2 7.3 44 334-377 24-79 (140)
356 PF03962 Mnd1: Mnd1 family; I 34.4 2.1E+02 0.0045 27.9 8.0 34 462-495 134-167 (188)
357 PRK15422 septal ring assembly 34.3 3.2E+02 0.007 24.0 9.4 15 405-419 8-22 (79)
358 COG4345 Uncharacterized protei 34.2 70 0.0015 31.5 4.8 66 402-474 106-171 (181)
359 PF12329 TMF_DNA_bd: TATA elem 34.1 2.8E+02 0.0061 23.2 8.7 32 461-492 38-69 (74)
360 PF05008 V-SNARE: Vesicle tran 33.9 2E+02 0.0043 23.3 6.8 59 438-496 2-66 (79)
361 PF10498 IFT57: Intra-flagella 33.9 4.5E+02 0.0098 28.2 11.1 13 350-362 210-222 (359)
362 PF11727 ISG65-75: Invariant s 33.6 5.2E+02 0.011 26.4 11.1 101 348-461 29-129 (286)
363 PF06005 DUF904: Protein of un 33.5 3E+02 0.0064 23.3 8.4 10 464-473 54-63 (72)
364 KOG0612 Rho-associated, coiled 33.5 3.7E+02 0.008 33.7 11.3 11 74-84 134-144 (1317)
365 PF00435 Spectrin: Spectrin re 33.4 2.4E+02 0.0051 22.1 11.4 30 465-494 75-104 (105)
366 KOG0612 Rho-associated, coiled 33.4 4.3E+02 0.0093 33.1 11.8 30 444-473 520-549 (1317)
367 KOG0500 Cyclic nucleotide-gate 33.4 2E+02 0.0043 32.6 8.6 20 376-395 406-425 (536)
368 PF01025 GrpE: GrpE; InterPro 33.3 20 0.00043 32.8 1.0 41 432-472 15-55 (165)
369 KOG0978 E3 ubiquitin ligase in 33.2 8.8E+02 0.019 28.7 14.6 56 437-492 568-623 (698)
370 PF00769 ERM: Ezrin/radixin/mo 33.1 3.4E+02 0.0073 27.4 9.6 48 430-477 77-124 (246)
371 KOG0963 Transcription factor/C 32.7 8.7E+02 0.019 28.4 15.3 19 464-482 190-208 (629)
372 PTZ00419 valyl-tRNA synthetase 32.7 1.2E+02 0.0027 36.0 7.4 52 440-491 934-992 (995)
373 cd07593 BAR_MUG137_fungi The B 32.7 4.9E+02 0.011 26.0 10.5 28 385-412 112-139 (215)
374 PF05600 DUF773: Protein of un 32.5 7.6E+02 0.016 27.7 12.9 20 378-397 394-413 (507)
375 TIGR01005 eps_transp_fam exopo 32.3 8.1E+02 0.018 28.0 14.7 24 347-370 157-180 (754)
376 PRK01005 V-type ATP synthase s 32.3 5.2E+02 0.011 25.7 11.7 10 408-417 8-17 (207)
377 TIGR03017 EpsF chain length de 32.3 2.6E+02 0.0055 29.4 8.9 21 348-368 135-155 (444)
378 PF05531 NPV_P10: Nucleopolyhe 32.2 2.8E+02 0.0061 24.0 7.5 43 444-486 23-65 (75)
379 KOG4360 Uncharacterized coiled 32.0 8.5E+02 0.018 28.1 14.5 26 335-364 159-184 (596)
380 KOG3850 Predicted membrane pro 31.9 4.9E+02 0.011 29.0 11.0 50 444-493 311-362 (455)
381 PF05622 HOOK: HOOK protein; 31.8 15 0.00034 41.5 0.0 22 396-417 310-331 (713)
382 PF15456 Uds1: Up-regulated Du 31.7 4.2E+02 0.0091 24.5 9.5 33 376-411 14-46 (124)
383 TIGR01000 bacteriocin_acc bact 31.7 5.6E+02 0.012 27.5 11.5 39 467-505 288-326 (457)
384 PF13863 DUF4200: Domain of un 31.7 3.5E+02 0.0076 23.6 11.5 43 441-483 66-108 (126)
385 KOG3859 Septins (P-loop GTPase 31.3 3.7E+02 0.008 29.2 9.7 23 379-402 287-309 (406)
386 COG0172 SerS Seryl-tRNA synthe 31.3 3.3E+02 0.0072 30.1 9.8 26 461-486 73-98 (429)
387 PF09325 Vps5: Vps5 C terminal 31.2 4.6E+02 0.01 24.8 13.4 25 460-484 167-191 (236)
388 PF09403 FadA: Adhesion protei 31.0 4.4E+02 0.0096 24.5 12.2 24 464-487 94-117 (126)
389 PF09728 Taxilin: Myosin-like 30.8 4.9E+02 0.011 27.2 10.5 17 334-350 21-37 (309)
390 TIGR01010 BexC_CtrB_KpsE polys 30.6 6.1E+02 0.013 26.2 11.2 103 378-493 145-265 (362)
391 PF13935 Ead_Ea22: Ead/Ea22-li 30.5 3.4E+02 0.0074 25.0 8.4 13 464-476 127-139 (139)
392 KOG2273 Membrane coat complex 30.5 7.4E+02 0.016 27.0 13.8 30 367-397 339-369 (503)
393 TIGR01730 RND_mfp RND family e 30.5 3.7E+02 0.008 26.3 9.2 19 487-505 126-144 (322)
394 PF04849 HAP1_N: HAP1 N-termin 30.3 6.5E+02 0.014 26.8 11.4 17 392-408 204-220 (306)
395 PF07851 TMPIT: TMPIT-like pro 30.3 3.7E+02 0.0079 28.9 9.6 22 433-454 37-58 (330)
396 COG0419 SbcC ATPase involved i 30.2 9.7E+02 0.021 28.3 15.4 10 405-414 583-592 (908)
397 PRK00578 prfB peptide chain re 30.1 5.9E+02 0.013 27.6 11.2 33 384-417 7-39 (367)
398 PTZ00046 rifin; Provisional 30.1 1.4E+02 0.003 32.4 6.5 77 420-496 51-139 (358)
399 TIGR02971 heterocyst_DevB ABC 29.8 5.9E+02 0.013 25.6 11.9 25 481-505 190-214 (327)
400 PF14483 Cut8_M: Cut8 dimerisa 29.7 22 0.00047 26.7 0.5 21 333-353 15-35 (38)
401 PF06156 DUF972: Protein of un 29.6 2.5E+02 0.0055 25.3 7.2 26 464-489 30-55 (107)
402 cd04790 HTH_Cfa-like_unk Helix 29.6 4.4E+02 0.0096 25.0 9.3 31 377-408 36-66 (172)
403 PF01166 TSC22: TSC-22/dip/bun 29.3 70 0.0015 26.6 3.3 30 456-485 14-43 (59)
404 PF03962 Mnd1: Mnd1 family; I 29.3 5.4E+02 0.012 25.0 11.7 8 297-304 12-19 (188)
405 PRK10787 DNA-binding ATP-depen 29.3 2E+02 0.0044 33.7 8.2 39 381-419 175-213 (784)
406 KOG1760 Molecular chaperone Pr 29.1 2.2E+02 0.0047 27.0 6.8 17 384-400 37-53 (131)
407 PRK08475 F0F1 ATP synthase sub 29.1 5E+02 0.011 24.5 11.8 13 405-417 42-54 (167)
408 PHA03158 hypothetical protein; 29.1 2.1E+02 0.0046 29.2 7.3 53 321-377 201-253 (273)
409 PF04871 Uso1_p115_C: Uso1 / p 29.0 4.7E+02 0.01 24.3 12.0 14 472-485 93-106 (136)
410 COG5185 HEC1 Protein involved 28.9 4E+02 0.0087 30.4 9.9 34 463-496 323-356 (622)
411 KOG2991 Splicing regulator [RN 28.9 4.6E+02 0.0099 27.9 9.8 48 450-497 137-197 (330)
412 COG0172 SerS Seryl-tRNA synthe 28.9 4.1E+02 0.0088 29.5 10.0 30 453-482 72-101 (429)
413 cd00890 Prefoldin Prefoldin is 28.8 2.2E+02 0.0047 24.6 6.6 15 384-398 30-44 (129)
414 KOG2002 TPR-containing nuclear 28.8 7.7E+02 0.017 30.3 12.7 14 21-34 359-372 (1018)
415 TIGR03752 conj_TIGR03752 integ 28.7 3.3E+02 0.0073 30.6 9.3 6 381-386 42-47 (472)
416 PF08654 DASH_Dad2: DASH compl 28.6 3E+02 0.0065 24.7 7.5 31 451-481 16-46 (103)
417 COG0576 GrpE Molecular chapero 28.4 1.1E+02 0.0024 29.9 5.1 50 457-506 44-93 (193)
418 PF07439 DUF1515: Protein of u 28.2 3.7E+02 0.008 25.0 8.0 12 480-491 50-61 (112)
419 PF08657 DASH_Spc34: DASH comp 28.2 3E+02 0.0064 28.4 8.3 15 363-377 159-174 (259)
420 PF09006 Surfac_D-trimer: Lung 28.2 1.2E+02 0.0027 24.1 4.4 26 459-484 2-27 (46)
421 KOG4643 Uncharacterized coiled 28.2 5.1E+02 0.011 32.1 11.1 35 457-491 524-558 (1195)
422 TIGR01144 ATP_synt_b ATP synth 28.0 4.4E+02 0.0096 23.6 13.7 29 369-397 11-39 (147)
423 PF03904 DUF334: Domain of unk 28.0 6.9E+02 0.015 25.8 10.9 20 395-414 58-77 (230)
424 PF04899 MbeD_MobD: MbeD/MobD 27.9 3.8E+02 0.0081 22.7 9.0 42 455-496 27-68 (70)
425 PF10146 zf-C4H2: Zinc finger- 27.9 6.5E+02 0.014 25.5 14.3 42 430-471 62-103 (230)
426 TIGR02132 phaR_Bmeg polyhydrox 27.8 4.4E+02 0.0094 26.5 9.0 24 461-484 112-135 (189)
427 COG4420 Predicted membrane pro 27.8 6.4E+02 0.014 25.4 10.5 45 440-484 132-176 (191)
428 PF15254 CCDC14: Coiled-coil d 27.8 1.2E+03 0.025 28.4 16.0 29 423-451 482-510 (861)
429 PF10191 COG7: Golgi complex c 27.8 8.1E+02 0.018 28.8 12.6 51 368-419 45-95 (766)
430 PF15463 ECM11: Extracellular 27.7 4.7E+02 0.01 24.1 8.9 83 363-458 51-138 (139)
431 PF07851 TMPIT: TMPIT-like pro 27.7 5.3E+02 0.011 27.7 10.3 6 408-413 25-30 (330)
432 COG1422 Predicted membrane pro 27.6 2E+02 0.0044 28.9 6.8 21 354-374 44-64 (201)
433 PF02970 TBCA: Tubulin binding 27.5 4.1E+02 0.0088 23.0 8.2 15 460-474 52-66 (90)
434 TIGR02894 DNA_bind_RsfA transc 27.5 6E+02 0.013 24.9 12.8 42 450-491 112-153 (161)
435 cd07617 BAR_Endophilin_B2 The 27.5 6.4E+02 0.014 25.6 10.3 33 379-411 125-157 (220)
436 PF06818 Fez1: Fez1; InterPro 27.4 2.4E+02 0.0053 28.3 7.3 10 450-459 46-55 (202)
437 KOG3647 Predicted coiled-coil 27.4 6.6E+02 0.014 26.9 10.6 97 385-494 102-199 (338)
438 PF13874 Nup54: Nucleoporin co 27.0 4.5E+02 0.0098 24.2 8.6 22 461-482 70-91 (141)
439 KOG0570 Transcriptional coacti 27.0 6.1E+02 0.013 25.9 10.0 60 430-495 131-190 (223)
440 PF01920 Prefoldin_2: Prefoldi 26.9 3.7E+02 0.0081 22.4 8.5 81 418-498 2-104 (106)
441 KOG2751 Beclin-like protein [S 26.9 9.5E+02 0.021 27.0 15.1 38 358-400 136-173 (447)
442 PF04102 SlyX: SlyX; InterPro 26.9 3.6E+02 0.0077 22.2 7.1 14 463-476 39-52 (69)
443 PF14257 DUF4349: Domain of un 26.8 2.6E+02 0.0057 27.7 7.6 20 333-352 64-83 (262)
444 PF13514 AAA_27: AAA domain 26.8 8.1E+02 0.018 29.6 12.7 34 449-482 736-769 (1111)
445 PF03233 Cauli_AT: Aphid trans 26.6 2.2E+02 0.0047 27.9 6.6 14 357-370 58-71 (163)
446 PLN02943 aminoacyl-tRNA ligase 26.6 1.7E+02 0.0036 35.0 7.1 52 440-491 894-952 (958)
447 KOG2991 Splicing regulator [RN 26.6 3E+02 0.0066 29.2 8.1 47 349-396 157-203 (330)
448 PF15066 CAGE1: Cancer-associa 26.4 1E+03 0.022 27.2 12.5 22 121-142 85-106 (527)
449 COG4467 Regulator of replicati 26.4 2.3E+02 0.005 26.3 6.4 51 417-474 4-54 (114)
450 KOG0980 Actin-binding protein 26.4 1.3E+03 0.028 28.4 14.7 9 161-169 253-261 (980)
451 KOG1961 Vacuolar sorting prote 26.4 8E+02 0.017 28.8 11.8 60 430-489 84-143 (683)
452 KOG2891 Surface glycoprotein [ 26.3 7.7E+02 0.017 26.6 11.0 32 450-481 401-434 (445)
453 PF15450 DUF4631: Domain of un 26.3 1E+03 0.022 27.3 13.8 102 381-484 348-466 (531)
454 KOG0243 Kinesin-like protein [ 26.3 5.2E+02 0.011 31.9 10.9 18 383-400 371-388 (1041)
455 TIGR02231 conserved hypothetic 26.1 7.8E+02 0.017 27.0 11.6 14 384-397 71-84 (525)
456 PRK14149 heat shock protein Gr 26.0 1E+02 0.0023 30.4 4.5 36 436-471 44-79 (191)
457 PF03148 Tektin: Tektin family 26.0 5.8E+02 0.013 27.2 10.3 13 406-418 249-261 (384)
458 PRK14473 F0F1 ATP synthase sub 26.0 5.3E+02 0.011 23.8 13.3 23 375-397 30-52 (164)
459 PF04880 NUDE_C: NUDE protein, 25.9 1.1E+02 0.0024 29.7 4.6 14 404-417 3-16 (166)
460 PF08702 Fib_alpha: Fibrinogen 25.8 5.7E+02 0.012 24.1 12.2 49 435-485 78-126 (146)
461 PHA01750 hypothetical protein 25.7 4.4E+02 0.0095 22.8 7.8 14 482-495 61-74 (75)
462 KOG2751 Beclin-like protein [S 25.7 5.8E+02 0.013 28.6 10.4 38 444-481 195-232 (447)
463 cd01106 HTH_TipAL-Mta Helix-Tu 25.5 1.3E+02 0.0027 25.8 4.5 61 346-410 5-67 (103)
464 KOG2685 Cystoskeletal protein 25.4 8.8E+02 0.019 27.1 11.6 124 346-474 238-386 (421)
465 KOG4460 Nuclear pore complex, 25.4 9.7E+02 0.021 28.1 12.2 48 435-482 588-635 (741)
466 KOG1962 B-cell receptor-associ 25.3 6.9E+02 0.015 25.5 10.1 54 441-494 157-210 (216)
467 PRK00708 sec-independent trans 25.3 7.2E+02 0.016 25.2 11.1 11 401-411 2-12 (209)
468 PRK14562 haloacid dehalogenase 25.2 2.7E+02 0.0059 27.3 7.2 42 357-398 109-150 (204)
469 PF00170 bZIP_1: bZIP transcri 25.1 3E+02 0.0065 21.8 6.3 6 471-476 48-53 (64)
470 PF14643 DUF4455: Domain of un 25.1 9.3E+02 0.02 26.4 14.3 25 475-499 409-433 (473)
471 PLN02281 chlorophyllide a oxyg 25.1 2.3E+02 0.0049 32.3 7.4 44 435-478 121-164 (536)
472 PF11500 Cut12: Spindle pole b 25.0 6E+02 0.013 24.6 9.2 11 464-474 120-130 (152)
473 KOG4360 Uncharacterized coiled 24.9 1.1E+03 0.024 27.2 12.7 50 448-500 256-305 (596)
474 PF09789 DUF2353: Uncharacteri 24.8 4E+02 0.0087 28.5 8.8 28 468-495 201-228 (319)
475 PRK05014 hscB co-chaperone Hsc 24.8 6.2E+02 0.013 24.2 12.8 11 341-351 29-39 (171)
476 PF07820 TraC: TraC-like prote 24.7 1.9E+02 0.0042 25.9 5.5 52 442-496 9-62 (92)
477 cd04776 HTH_GnyR Helix-Turn-He 24.7 1.6E+02 0.0034 26.3 5.1 57 442-498 59-115 (118)
478 PF12795 MscS_porin: Mechanose 24.7 6.8E+02 0.015 24.6 12.4 118 370-493 3-136 (240)
479 cd07663 BAR_SNX5 The Bin/Amphi 24.7 7.4E+02 0.016 25.1 13.3 133 333-490 85-218 (218)
480 cd07307 BAR The Bin/Amphiphysi 24.7 4.7E+02 0.01 22.8 13.6 125 360-486 67-191 (194)
481 PF12325 TMF_TATA_bd: TATA ele 24.6 5.6E+02 0.012 23.6 11.4 82 406-490 25-109 (120)
482 PF01093 Clusterin: Clusterin; 24.6 3.1E+02 0.0068 30.4 8.2 55 406-477 18-72 (436)
483 COG0216 PrfA Protein chain rel 24.5 4.7E+02 0.01 28.6 9.2 86 363-448 9-103 (363)
484 PF00012 HSP70: Hsp70 protein; 24.5 2.6E+02 0.0056 30.3 7.5 95 381-495 504-602 (602)
485 KOG2629 Peroxisomal membrane a 24.4 5.5E+02 0.012 27.4 9.5 74 414-490 122-195 (300)
486 PRK10865 protein disaggregatio 24.4 1.2E+03 0.027 27.6 13.6 140 334-495 347-488 (857)
487 PRK11820 hypothetical protein; 24.3 8.3E+02 0.018 25.5 12.7 129 355-494 81-214 (288)
488 PF08826 DMPK_coil: DMPK coile 24.3 4.1E+02 0.0089 22.0 7.6 53 444-496 6-58 (61)
489 COG5493 Uncharacterized conser 24.3 6.9E+02 0.015 25.6 9.8 89 396-489 12-114 (231)
490 PRK05729 valS valyl-tRNA synth 24.3 2E+02 0.0044 33.7 7.1 66 425-490 808-873 (874)
491 PRK03947 prefoldin subunit alp 24.3 5.3E+02 0.011 23.2 12.1 91 362-478 7-137 (140)
492 PRK13461 F0F1 ATP synthase sub 24.2 5.6E+02 0.012 23.5 13.4 134 365-506 17-154 (159)
493 smart00721 BAR BAR domain. 24.2 6E+02 0.013 23.9 16.0 157 332-495 69-239 (239)
494 PHA03161 hypothetical protein; 24.1 6.1E+02 0.013 24.6 9.0 68 410-478 37-104 (150)
495 TIGR00293 prefoldin, archaeal 24.1 2.6E+02 0.0057 24.5 6.3 42 425-466 83-124 (126)
496 PF04124 Dor1: Dor1-like famil 24.1 84 0.0018 32.5 3.7 93 313-413 108-213 (338)
497 PF04799 Fzo_mitofusin: fzo-li 24.1 5.7E+02 0.012 25.2 9.0 65 417-481 105-169 (171)
498 KOG4593 Mitotic checkpoint pro 24.0 1.1E+03 0.024 28.1 12.5 98 386-483 404-523 (716)
499 PF10498 IFT57: Intra-flagella 24.0 8.7E+02 0.019 26.2 11.2 96 389-493 229-324 (359)
500 PF07028 DUF1319: Protein of u 24.0 4.7E+02 0.01 24.7 8.1 66 382-465 18-83 (126)
No 1
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=100.00 E-value=2e-62 Score=481.30 Aligned_cols=216 Identities=50% Similarity=0.738 Sum_probs=211.1
Q ss_pred CCCCCCcccccccccccCC---CCCcccccccccce-EEeccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHH
Q 010595 289 SPADGSRNFSFSGIDLASG---DSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLE 364 (506)
Q Consensus 289 ~~~~es~sFsl~~i~~~~~---~~d~EE~~SvvsEt-VdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn 364 (506)
.-|++|+||||++|.+|.| +++|||++|+++++ |+||||||++||+++|++||+||||||+||+++|++||++||+
T Consensus 50 ~l~~~s~sftl~~~~~~~~~~~~~~~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe 129 (269)
T PF05278_consen 50 ELPDESQSFTLSEIECMKGLKTNEGDEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE 129 (269)
T ss_pred CCCCcCccccHHHHHHHhcccccccchhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence 3568999999999999997 56788999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 010595 365 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL 444 (506)
Q Consensus 365 ~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkEL 444 (506)
+||+||++||++|+++||++||.+|+++|.||++|||+|+|||++|+||.++++++++|++++++|++.++.++..+.||
T Consensus 130 ~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL 209 (269)
T PF05278_consen 130 CLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL 209 (269)
T ss_pred HHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 010595 445 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE 504 (506)
Q Consensus 445 Ee~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~ 504 (506)
++++++|+++++++++++.||++|++||++||+++++|+++|.+++|||++|+||||+|+
T Consensus 210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl~~~ 269 (269)
T PF05278_consen 210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSLLDE 269 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 2
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=147.64 Aligned_cols=121 Identities=24% Similarity=0.338 Sum_probs=107.6
Q ss_pred ccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhhHHhcCcc
Q 010595 325 GKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQID 402 (506)
Q Consensus 325 nGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~--ksplqeLS~~dL~ea~~~L~dLe~aGfK 402 (506)
|||+|+++|++++..||++||++|+.|+.+++++|+.||+.||++|++++ +++ +.++..++.+|..++.+++.+||+
T Consensus 156 ~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 234 (297)
T KOG1987|consen 156 NGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSL-QEASNYDLKEAKSALTYVIAAGFK 234 (297)
T ss_pred ceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccH-HHhchhHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999 778 999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 403 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 403 VDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
||||.++++++.+.++ .+...+...+++++++..+..+......
T Consensus 235 ld~l~~~~~~~~~k~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (297)
T KOG1987|consen 235 LDWLEKKLNEVKEKKK--------------KDLWYEIRLQELEEELKSLKDKCSDLEG 278 (297)
T ss_pred HhHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 9999999999998883 1345555666667777777766665554
No 3
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=98.07 E-value=0.00022 Score=68.47 Aligned_cols=127 Identities=20% Similarity=0.346 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 010595 361 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST 440 (506)
Q Consensus 361 ~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~ 440 (506)
..|=+..+|++...+.-+.+ +.+.+..-..+|.+|+.-||+|.-|+.||+++...+. .+..+.+.++..+..++..
T Consensus 47 Glm~~f~~l~e~v~~l~idd-~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~---~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 47 GLMVTFANLAEKVKKLQIDD-SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD---DQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888444 8999999999999999999999999999999887663 3333333333333333332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 441 ---KKELESQMNELALKEKEVAG----LKESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 441 ---kkELEe~leeL~qKeKEv~d----~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
.+++|+.+.+|.++--++.+ ++..-++....+.+|+-+...|.+.+.+++.
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444433333333 1112223334555666666666665555544
No 4
>PRK11637 AmiB activator; Provisional
Probab=93.54 E-value=3.2 Score=43.75 Aligned_cols=124 Identities=16% Similarity=0.266 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHHHHHHHHh-cchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH-hhhhhhhHHHHHHh
Q 010595 355 SNSMRAYYLECLCSVVQELQ-STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQTIDAAKAN 432 (506)
Q Consensus 355 n~~lRs~YMn~LlsLIetL~-ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare-~~~~~~~leeeKd~ 432 (506)
...+|.+|++-=.+.++.|- ..+. .++......|..|. ++-...|+++...++ +..+.+.++.++..
T Consensus 127 ~~rlra~Y~~g~~~~l~vLl~a~~~-----~~~~r~~~~l~~i~------~~d~~~l~~l~~~~~~L~~~k~~le~~~~~ 195 (428)
T PRK11637 127 AAQLDAAFRQGEHTGLQLILSGEES-----QRGERILAYFGYLN------QARQETIAELKQTREELAAQKAELEEKQSQ 195 (428)
T ss_pred HHHHHHHHHcCCCcHHHHHhcCCCh-----hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777744333333232 2221 22333333333333 234555666665553 22222233333322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 433 CVNLLESTKKELESQMNELALKEKE----VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qKeKE----v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
++....+++.+..+|....++ +..++..+.+....|.+|+....+|.+.|..++-..
T Consensus 196 ----l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~~ 256 (428)
T PRK11637 196 ----QKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREA 256 (428)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444444433333 555666666677777888877777777776655443
No 5
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.30 E-value=6.5 Score=40.86 Aligned_cols=64 Identities=19% Similarity=0.370 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 010595 438 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 501 (506)
Q Consensus 438 e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl 501 (506)
..++.+|.+...++..+.+++.+.+.++.+...++.....+-..+...|..+.+.+++-.+.+.
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~ 270 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF 270 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3345556666666666666666666666666666666666666666666666666666665554
No 6
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.05 E-value=6.9 Score=40.26 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010595 440 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ 477 (506)
++++|.+.-.++..+.+++.+.+.++.++.+.+..+..
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333333333333333333333333333
No 7
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.64 E-value=1.3 Score=44.96 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 440 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
..+|-++.+++|.+++.++.+.++|+..++..+++|+.+..+|.--+.+++-+.+.+.
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3344445555666666666666667777777777777766666555556666555543
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.84 E-value=7.7 Score=41.47 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=22.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 431 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 431 d~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
...+..+...+..+++...++...+.++..+..++.+...+|.+|+.+..++
T Consensus 340 ~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 340 LELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444333
No 9
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.80 E-value=6.1 Score=48.07 Aligned_cols=52 Identities=6% Similarity=0.137 Sum_probs=43.4
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA 429 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leee 429 (506)
|-.+++.+|..+...+..|++..=+|+=|+.++..+.+....++.|......
T Consensus 214 l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~ 265 (1353)
T TIGR02680 214 LPPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLR 265 (1353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999888888888777777664433
No 10
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=89.75 E-value=5 Score=37.08 Aligned_cols=37 Identities=14% Similarity=0.411 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 462 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
++.+.++++-|.++..+...+...|..|..|+...++
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466667777777777777777777777777776654
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.58 E-value=16 Score=41.69 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=9.6
Q ss_pred EEeccEEeecchHHHHHHHHhhcc
Q 010595 322 VSVGKYHVRASISSILQSIISRYG 345 (506)
Q Consensus 322 VdVnGFqVlpSqv~iV~~IFeKHp 345 (506)
..+||..+.. . -|..+|...|
T Consensus 112 ~~~~~~~~~~--~-~~~~~l~~~~ 132 (1179)
T TIGR02168 112 YFINGQPCRL--K-DIQDLFLDTG 132 (1179)
T ss_pred eeECCCcccH--H-HHHHHHhccC
Confidence 3466655421 2 2445554443
No 12
>PRK11637 AmiB activator; Provisional
Probab=89.00 E-value=14 Score=39.08 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010595 357 SMRAYYLECLCSVVQEL 373 (506)
Q Consensus 357 ~lRs~YMn~LlsLIetL 373 (506)
.+|-..+-+||.++-.+
T Consensus 19 ~~~~~~~~~ll~~~~~~ 35 (428)
T PRK11637 19 AIRPILYASVLSAGVLL 35 (428)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 34444444444443333
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=88.15 E-value=22 Score=40.87 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=24.3
Q ss_pred EEeccEEeecchHHHHHHHHhhccccc-----------ccCcccchhHHHHHHHHHHHHHH
Q 010595 322 VSVGKYHVRASISSILQSIISRYGDIA-----------ANCNLESNSMRAYYLECLCSVVQ 371 (506)
Q Consensus 322 VdVnGFqVlpSqv~iV~~IFeKHpDIA-----------snf~lKn~~lRs~YMn~LlsLIe 371 (506)
..+||-.|. ..-+..+|...|=.. ..|...++.-|..|++-+.++..
T Consensus 110 ~~~n~~~~~---~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~ 167 (1164)
T TIGR02169 110 YYLNGQRVR---LSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAE 167 (1164)
T ss_pred EEECCcccc---HHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHH
Confidence 567775552 344566665544111 12333356666666777666433
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.07 E-value=16 Score=45.28 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=73.0
Q ss_pred EeecchHHHHHHHHhh-cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhc--cHHHHHHHHHHHhhHHhcCcchh
Q 010595 328 HVRASISSILQSIISR-YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQM--TKAKVKEMMAVLKDVESAQIDVD 404 (506)
Q Consensus 328 qVlpSqv~iV~~IFeK-HpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeL--S~~dL~ea~~~L~dLe~aGfKVD 404 (506)
+|-.+.....+++|.. -..+|++| ++++.=|...++-++++=+.+.+.- ..| ++..|..+...|.
T Consensus 250 ~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~-kkLe~tE~nL~rI~diL~---------- 317 (1486)
T PRK04863 250 RVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSR-RQLAAEQYRLVEMARELA---------- 317 (1486)
T ss_pred HhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----------
Confidence 4445556666666654 35677777 6666666666666655544443332 211 2222333333333
Q ss_pred hhhhHHHHHHHHHHhhhhhhhHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010595 405 WLRNILNEISEAIEFSTQHQTIDAA-------KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 405 WL~kKLeEV~Eare~~~~~~~leee-------Kd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ 477 (506)
=|..+|..+.+..+.+.+|..+..+ .......++++..++++..+.|.+.+.++.+..+++.++.+++..|+.
T Consensus 318 ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqe 397 (1486)
T PRK04863 318 ELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKS 397 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455444444444444444333 112222333334444444444444444444444455555555555554
Q ss_pred hhhhHHHHHHHhhhhh
Q 010595 478 ESNRLEQIIQATQSKV 493 (506)
Q Consensus 478 ess~L~k~v~~~kSKV 493 (506)
+..++.+.+..++.++
T Consensus 398 qLaelqqel~elQ~el 413 (1486)
T PRK04863 398 QLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 15
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=87.92 E-value=4.7 Score=38.82 Aligned_cols=134 Identities=12% Similarity=0.163 Sum_probs=69.7
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH-HHHHHHHhhhhh
Q 010595 345 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN-EISEAIEFSTQH 423 (506)
Q Consensus 345 pDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe-EV~Eare~~~~~ 423 (506)
+++|..+.+....+|.+|=.-++. +..-. +--+.++++|| .....+..+.++|+.+.=++...- ++..+.=.....
T Consensus 4 ~evA~~lGVS~~TLRrw~k~g~L~-~~R~~-~G~R~y~~~dl-~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~ 80 (175)
T PRK13182 4 PFVAKKLGVSPKTVQRWVKQLNLP-CEKNE-YGHYIFTEEDL-QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQ 80 (175)
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCC-CCcCC-CCCEEECHHHH-HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCC
Confidence 345556666666677766555543 11111 12477899999 789999999999999876654221 110000000011
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHhhhhHHHH
Q 010595 424 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG---------LKESVAKTKARLSDLELESNRLEQI 485 (506)
Q Consensus 424 ~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d---------~~eRv~e~k~RL~~LE~ess~L~k~ 485 (506)
.++.+. -.+++...+.|++.+++|.+..+..+| =|..++||..+|..||....++++.
T Consensus 81 ~t~~~R----~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 81 NISSVD----FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred ccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111 122333333344444444433333333 1456667777777777766666553
No 16
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.83 E-value=11 Score=36.66 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=8.2
Q ss_pred cchhhhhhHHHHHHH
Q 010595 401 IDVDWLRNILNEISE 415 (506)
Q Consensus 401 fKVDWL~kKLeEV~E 415 (506)
...+=|+.+++++.+
T Consensus 34 ~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 34 EENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555566666555
No 17
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.62 E-value=5.9 Score=40.96 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=67.9
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 419 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 419 ~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
|.+++.....--.++-.+....++||+.|-+.+...|++...|+.+-..+-.-|..+=.+...+.+-+..++-|+++..+
T Consensus 221 Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 221 YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555455668888899999999999999999999999999999999999999999999999999999887643
No 18
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.49 E-value=5.3 Score=45.78 Aligned_cols=130 Identities=16% Similarity=0.253 Sum_probs=63.0
Q ss_pred eecchHHHHHHHHhhccc--cc---ccCcccchhHHHHHHHHHHHHHHHHhcchh--hhccHHHHHHHHHHHhhHHhcCc
Q 010595 329 VRASISSILQSIISRYGD--IA---ANCNLESNSMRAYYLECLCSVVQELQSTSL--MQMTKAKVKEMMAVLKDVESAQI 401 (506)
Q Consensus 329 VlpSqv~iV~~IFeKHpD--IA---snf~lKn~~lRs~YMn~LlsLIetL~kspl--qeLS~~dL~ea~~~L~dLe~aGf 401 (506)
..+++...++.||.+-.. |. ++ +...+.-. -.+++|..-++.|..--+ +++-..+|..-...|....+.++
T Consensus 501 ~~~sF~~~Ik~lL~r~~~qPill~s~~-k~~~p~~~-E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql 578 (717)
T PF10168_consen 501 SPPSFEKHIKSLLQRSSSQPILLKSSD-KSSSPSPQ-ECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL 578 (717)
T ss_pred ccchHHHHHHHHhcCCCCCCeecCCCc-cccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999986421 22 22 11222222 244666666666654322 23344555555555555554322
Q ss_pred -chhhhhhHHHHHHHH-HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 402 -DVDWLRNILNEISEA-IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 402 -KVDWL~kKLeEV~Ea-re~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
+++=|+.+.+.|.+. .++.+++..+.++.+.+.++++.+.+.+...+-.|...|+++++
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK 639 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 112222222333221 23444555555555555555555555554444445555555444
No 19
>PRK02224 chromosome segregation protein; Provisional
Probab=87.32 E-value=14 Score=42.03 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=13.0
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 010595 402 DVDWLRNILNEISEAIEFSTQHQTIDAAKANC 433 (506)
Q Consensus 402 KVDWL~kKLeEV~Eare~~~~~~~leeeKd~~ 433 (506)
.++=|+.+++.+....+.-.+...+....+..
T Consensus 490 ~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l 521 (880)
T PRK02224 490 EVEEVEERLERAEDLVEAEDRIERLEERREDL 521 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444443333333333333333
No 20
>PRK01156 chromosome segregation protein; Provisional
Probab=87.12 E-value=11 Score=43.10 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=10.2
Q ss_pred HHHhhHHhcCcchhhhhhHHHHHH
Q 010595 391 AVLKDVESAQIDVDWLRNILNEIS 414 (506)
Q Consensus 391 ~~L~dLe~aGfKVDWL~kKLeEV~ 414 (506)
..+..++...=++.+++.++.++.
T Consensus 319 ~~l~~~e~~~~~~e~~~~~~~e~~ 342 (895)
T PRK01156 319 AEINKYHAIIKKLSVLQKDYNDYI 342 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443334444444444443
No 21
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.52 E-value=11 Score=35.01 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 408 NILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 408 kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
+.|+.|.++.. ..|+-+..++..+..+|+++.+=..+-.++|.+++.-+..+..-+..++.....|+-.|.
T Consensus 50 kql~~vs~~l~---------~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 50 KQLEQVSESLS---------STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777666553 122223344555555555555555555555666666666666666666666665555555
Q ss_pred Hhhh
Q 010595 488 ATQS 491 (506)
Q Consensus 488 ~~kS 491 (506)
.+..
T Consensus 121 ~ie~ 124 (126)
T PF07889_consen 121 EIEE 124 (126)
T ss_pred HHhc
Confidence 5443
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.39 E-value=11 Score=40.24 Aligned_cols=95 Identities=13% Similarity=0.218 Sum_probs=40.9
Q ss_pred hcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHH
Q 010595 398 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNE-------LALKEKEVAGLKESVAKTKA 470 (506)
Q Consensus 398 ~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~lee-------L~qKeKEv~d~~eRv~e~k~ 470 (506)
.+.-++++|+..+.++....+-+..+ ++.........+...++++++.+.+ +.+.+.++.+++..+.+..+
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~--i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~ 255 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKN--IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSA 255 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 44455667777777665554322111 1111111122233333333333333 33333444444334444444
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 471 RLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 471 RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
.|..++....+++..+..++.-..
T Consensus 256 ~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443333
No 23
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.07 E-value=14 Score=31.81 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 461 LKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
+.+++.+++..|..||.+...++..+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444433
No 24
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.70 E-value=36 Score=33.23 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHH---HHHHH
Q 010595 356 NSMRAYYLECLCS---VVQEL 373 (506)
Q Consensus 356 ~~lRs~YMn~Lls---LIetL 373 (506)
..++.||=++..+ +|.+|
T Consensus 12 ~~iK~YYndIT~~NL~lIksL 32 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKSL 32 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 5688899777644 44444
No 25
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=85.49 E-value=29 Score=32.57 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcC---cchhhhhhHH
Q 010595 355 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ---IDVDWLRNIL 410 (506)
Q Consensus 355 n~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aG---fKVDWL~kKL 410 (506)
--..|++|-++.+-||+-|...- .++... |......+.++.... ++-+||+.-|
T Consensus 48 ~dsiK~y~~~vh~pll~~~~~~~-~~~~~~-l~~~~~~~~~vd~~~~a~i~e~~L~~el 104 (204)
T PF04740_consen 48 YDSIKNYFSEVHIPLLQGLILLL-EEYQEA-LKFIKDFQSEVDSSSNAIIDEDFLESEL 104 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHhHHHHHHHHcccccccccHHHHHHHH
Confidence 34677888887887777776554 333333 355555555665433 8888888444
No 26
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.49 E-value=28 Score=36.32 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k 484 (506)
..+.....+++.+..+|.++++++.+...+|++..++..++..+-..+++
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666656666665555555555555444
No 27
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.47 E-value=12 Score=39.04 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=46.4
Q ss_pred hhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 407 RNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 407 ~kKLeEV~Ear-e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
+..|.||-|+- +-+-..++|+.+|.++.-.+..++.+|+++.+.|+++.++..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e 137 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777654 5667789999999999999999999999999999999999866
No 28
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.12 E-value=33 Score=32.03 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
..+...+...+...+++...++++.+.+.++.+.+..+.++......+.+.+.+.++
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455445555555667777777777776666666666655554
No 29
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.08 E-value=9.4 Score=43.88 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010595 433 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
+.+.+..++.+++.++++|.+.+++.++++++-+.+.+|+.++.+.-..|.+++..+
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555544433
No 30
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.69 E-value=5.4 Score=40.77 Aligned_cols=8 Identities=50% Similarity=0.734 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010595 469 KARLSDLE 476 (506)
Q Consensus 469 k~RL~~LE 476 (506)
+.|+.+|+
T Consensus 197 ~~r~~ELe 204 (290)
T COG4026 197 KKRWDELE 204 (290)
T ss_pred HHHHHHhc
Confidence 33333333
No 31
>PRK02224 chromosome segregation protein; Provisional
Probab=84.65 E-value=16 Score=41.57 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=19.4
Q ss_pred HHHHHHhhcccccccCcccchhHHHHHHHHHHHH
Q 010595 336 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSV 369 (506)
Q Consensus 336 iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsL 369 (506)
+.+.||-..|+|..=+ -.+|.=|...+.=|++|
T Consensus 129 f~~~~~i~Qge~~~~l-~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 129 FVNCAYVRQGEVNKLI-NATPSDRQDMIDDLLQL 161 (880)
T ss_pred hcceeEeeccChHHHH-cCCHHHHHHHHHHHhCC
Confidence 4455566667765443 34566666666666665
No 32
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=7.3 Score=35.47 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=24.3
Q ss_pred HHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 010595 442 KELESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES 479 (506)
Q Consensus 442 kELEe~leeL~-qKeKEv~d~~eRv~e~k~RL~~LE~es 479 (506)
+.|+.++.++. ..+++|.+.++||.+.+.++..||.+.
T Consensus 68 r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 68 RKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555544444 334566777788888888888887654
No 33
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.37 E-value=18 Score=35.11 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=11.1
Q ss_pred hhHHhcCcchhhhhhHHHHHHHHH
Q 010595 394 KDVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 394 ~dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
.++.....++.+|+.+++++....
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i 86 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRI 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554444333
No 34
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=84.25 E-value=15 Score=32.68 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=21.9
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 411 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe 411 (506)
+-.+.++|..+..+.. |++.||.|+=.+.-|+
T Consensus 35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l~ 66 (118)
T cd04776 35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELLD 66 (118)
T ss_pred cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHHH
Confidence 5677788776655544 8889998765555444
No 35
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.19 E-value=50 Score=33.33 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 407 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 407 ~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
++--++...+++....+..++++.+......+.++.|+++...+|...++++...+.+.++...--.+|-++.++|
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3334444444444444444555555544555556666766666666666666666666665555555555555554
No 36
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.12 E-value=29 Score=41.59 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=47.7
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhh
Q 010595 345 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQ 424 (506)
Q Consensus 345 pDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~ 424 (506)
|+|..=...+....|. |++=..++..--. --+.-...+..+..-|......++=|+++|+.+...++.+..|+
T Consensus 144 G~V~~i~~~kp~err~-iiEEaaGv~~y~~------r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~ 216 (1163)
T COG1196 144 GKVEEIINAKPEERRK-LIEEAAGVSKYKE------RKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ 216 (1163)
T ss_pred ccHHHHHcCCHHHHHH-HHHHHhchHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555 6666555544321 11122222333333444444666788888888888888888888
Q ss_pred hHHHHHHhhH
Q 010595 425 TIDAAKANCV 434 (506)
Q Consensus 425 ~leeeKd~~e 434 (506)
+++.++...+
T Consensus 217 ~l~~e~~~~~ 226 (1163)
T COG1196 217 ELKAELRELE 226 (1163)
T ss_pred HHHHHHHHHH
Confidence 8888766433
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.04 E-value=15 Score=41.38 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH
Q 010595 463 ESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 463 eRv~e~k~RL~~LE~ess~L~k 484 (506)
.+.++.+.|+.+||.....|.+
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444433
No 38
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.79 E-value=16 Score=40.19 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=55.3
Q ss_pred eEEeccEEeecchH-HHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhH---
Q 010595 321 SVSVGKYHVRASIS-SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV--- 396 (506)
Q Consensus 321 tVdVnGFqVlpSqv-~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dL--- 396 (506)
...|||-.|..+++ .+.+.++.-||.... ..+-++..+-.+|+-+.++.+.+.+. +.+ -.++.++...|..+
T Consensus 108 ~~~iNg~~v~~~~l~~l~~~li~i~gQ~~~-~~l~~~~~~~~lLD~~~~~~~~~~~~--~~~-~~~~~~~~~~L~~l~~~ 183 (563)
T TIGR00634 108 RAYLNGKPVSASSLLEFTSELLDLHGQHDQ-QLLFRPDEQRQLLDTFAGANEKVKAY--REL-YQAWLKARQQLKDRQQK 183 (563)
T ss_pred EEEECCEEccHHHHHHHhcCeEEEECchHH-HHhcCHHHHHHHHHHhcCchHHHHHH--HHH-HHHHHHHHHHHHHHHhh
Confidence 37899988866554 333334555888864 44557777777888777743322222 222 45555555555554
Q ss_pred -HhcCcchhhhhhHHHHHHHHH
Q 010595 397 -ESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 397 -e~aGfKVDWL~kKLeEV~Ear 417 (506)
+...=+++||+..|+||.++.
T Consensus 184 ~~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 184 EQELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHhCC
Confidence 334556778888877776443
No 39
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.63 E-value=34 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 010595 464 SVAKTKARLSDLELESNRL 482 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L 482 (506)
.+.+.+++|.+++.....+
T Consensus 125 ~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 125 EIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333
No 40
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.49 E-value=25 Score=43.76 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=6.6
Q ss_pred cchhhhhhHHHHHHHHH
Q 010595 401 IDVDWLRNILNEISEAI 417 (506)
Q Consensus 401 fKVDWL~kKLeEV~Ear 417 (506)
-++.=++..|.||....
T Consensus 307 ~nL~rI~diL~ELe~rL 323 (1486)
T PRK04863 307 YRLVEMARELAELNEAE 323 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444333
No 41
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=82.41 E-value=11 Score=40.42 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010595 459 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 500 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS 500 (506)
.+++++..+++++|.+||.+...++..+..+-.++=++...+
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~ 110 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDS 110 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 345556667777777777777777777766666665554433
No 42
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.35 E-value=8.9 Score=40.99 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
+++++....+..++++|++-+++++.-..++.+++++ ||-+...|.+.++-|++||+.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~et---LEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKET---LEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Confidence 3333334444455566666666666654444444444 345556666666667777665
No 43
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.26 E-value=54 Score=37.30 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=35.7
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 424 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT---KARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 424 ~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~---k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
..++.++...+..++.++.|+++..+|+....++..+++.+|+-- -+-..++-.++.+|.+.|..++++.+.
T Consensus 283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666665555555555555555444311 112223334444555555555555444
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.10 E-value=55 Score=32.28 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 010595 480 NRLEQII 486 (506)
Q Consensus 480 s~L~k~v 486 (506)
..|.+.|
T Consensus 200 ~~Le~~i 206 (237)
T PF00261_consen 200 KKLEKEI 206 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 45
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=82.04 E-value=53 Score=34.73 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=43.9
Q ss_pred hHHHHHHHHhhccccc--ccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcC
Q 010595 333 ISSILQSIISRYGDIA--ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ 400 (506)
Q Consensus 333 qv~iV~~IFeKHpDIA--snf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aG 400 (506)
....|+.|++=-=+|- +++++.++.||. |+..|.++..++..-| ++..|+..+..|...-
T Consensus 138 d~~~v~eVI~~RN~~MHS~emkvs~~wm~~-~~~~i~nll~~f~~ip-------e~~~a~~~Ie~ll~~d 199 (307)
T PF15112_consen 138 DRKKVREVIKCRNEIMHSSEMKVSSQWMRD-FQMKIQNLLNEFRNIP-------EIVAAGSRIEQLLTSD 199 (307)
T ss_pred cHHHHHHHHHHHHHhhcCcccccCHHHHHH-HHHHHHHHHHHhccCh-------HHHHHHHHHHHHHhhh
Confidence 7788888888766664 556666777775 7788888888887777 6777777777776443
No 46
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.03 E-value=30 Score=35.12 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010595 466 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 466 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 505 (506)
.+...+|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~ 281 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT 281 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence 3445556666666666666677777777777777788875
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.00 E-value=37 Score=31.59 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
+...+.-+...|+..+..+++.+.-+..|.
T Consensus 109 ~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 109 KAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333344444445555555555554444443
No 48
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.86 E-value=54 Score=33.87 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=18.9
Q ss_pred HHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhc
Q 010595 336 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQS 375 (506)
Q Consensus 336 iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~k 375 (506)
+=..|+.-.|-+...+..-++.+|. -|+.=+.+|.+.+.
T Consensus 94 ~E~~~~~~nPpLf~EY~~a~~d~r~-~m~~q~~~vK~~aR 132 (325)
T PF08317_consen 94 IEEETYESNPPLFREYYTADPDMRL-LMDNQFQLVKTYAR 132 (325)
T ss_pred HHHHHhhcCCHHHHHHHcCCHHHHH-HHHHHHHHHHHHHH
Confidence 3344444455544444444555553 35555555555443
No 49
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=81.78 E-value=2 Score=45.15 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 457 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
.|.++.+||.++.+|+.+++.....+.+.+..+..|++.+.+
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555445555555566666665544
No 50
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.97 E-value=18 Score=43.49 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010595 453 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 453 qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~k 490 (506)
++.++..++++.+.++.+++...+.+...|.+.+.+..
T Consensus 419 ~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 419 SLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444445555555545555544444443
No 51
>PRK09343 prefoldin subunit beta; Provisional
Probab=80.30 E-value=27 Score=31.45 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
.+...++.+|++-+..+|..||.....|.+.+..+..+++...
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557779999999999999999999999999999888764
No 52
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.23 E-value=39 Score=37.90 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=10.7
Q ss_pred HHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 474 DLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 474 ~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
+|+.+...+...+...+..+.+|.
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.93 E-value=41 Score=34.25 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010595 434 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 472 (506)
Q Consensus 434 e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL 472 (506)
.+...++..+|..-++++..+++++.+.+.++..++.-|
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444443333
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.81 E-value=74 Score=38.32 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=2.9
Q ss_pred hhhHHHHH
Q 010595 406 LRNILNEI 413 (506)
Q Consensus 406 L~kKLeEV 413 (506)
+...++++
T Consensus 791 ~~~~~~~~ 798 (1163)
T COG1196 791 LQEELEEL 798 (1163)
T ss_pred HHHHHHHH
Confidence 33333333
No 55
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.96 E-value=34 Score=35.01 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
+...++++++.+++++.+..++.-|+.+..++..+|
T Consensus 88 q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 88 QMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444455555555555555555554444444444
No 56
>PRK14148 heat shock protein GrpE; Provisional
Probab=78.82 E-value=3.9 Score=40.16 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=44.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
+...+.++.++++++.++++++.++..+..++.+++.-=+....+|....|+.+||
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LL 97 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELL 97 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555566667778899999999999999999888888899998888888776
No 57
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=78.49 E-value=57 Score=37.43 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=4.2
Q ss_pred chhhhhhHHH
Q 010595 402 DVDWLRNILN 411 (506)
Q Consensus 402 KVDWL~kKLe 411 (506)
.++.|+..+.
T Consensus 825 ~~~~l~~~~~ 834 (1179)
T TIGR02168 825 RLESLERRIA 834 (1179)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 58
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=78.44 E-value=40 Score=37.35 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=22.5
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 010595 351 CNLESNSMRAYYLECLCSVVQELQSTSLMQMT 382 (506)
Q Consensus 351 f~lKn~~lRs~YMn~LlsLIetL~ksplqeLS 382 (506)
..+.|+.+|+.+|+=|+.|--=|.+-- .+++
T Consensus 345 tlLe~~~~R~~fldeL~EL~aFL~qRl-~El~ 375 (507)
T PF05600_consen 345 TLLENPETRNQFLDELLELEAFLKQRL-YELS 375 (507)
T ss_pred hhcCCHhHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 568899999999999998855554433 4444
No 59
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=78.14 E-value=76 Score=31.55 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=7.2
Q ss_pred hhccHHHHHHHHH
Q 010595 379 MQMTKAKVKEMMA 391 (506)
Q Consensus 379 qeLS~~dL~ea~~ 391 (506)
..++..+|..+..
T Consensus 118 ~~~~~~~l~~~l~ 130 (264)
T PF06008_consen 118 DQLPSEDLQRALA 130 (264)
T ss_pred CCCCHHHHHHHHH
Confidence 3566666655543
No 60
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.62 E-value=1e+02 Score=33.62 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHH
Q 010595 437 LESTKKELESQMNELA-LKEKEVAGLKESVAKTKARLSDLE 476 (506)
Q Consensus 437 ~e~~kkELEe~leeL~-qKeKEv~d~~eRv~e~k~RL~~LE 476 (506)
|..+|++|-.+-+.++ |-.+...|+.+-++-+..|++.||
T Consensus 278 i~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 278 IYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444555433333222 334555566666666777777776
No 61
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=77.23 E-value=26 Score=43.07 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHH
Q 010595 406 LRNILNEISEAIEFSTQHQTIDA 428 (506)
Q Consensus 406 L~kKLeEV~Eare~~~~~~~lee 428 (506)
|++|+++|-++-+|.+.-..++.
T Consensus 170 LKkkfD~IF~~tky~KAld~~kk 192 (1294)
T KOG0962|consen 170 LKKKFDDIFSATKYTKALDSLKK 192 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666555555444444333
No 62
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=76.92 E-value=46 Score=35.35 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=7.4
Q ss_pred cccccCcccchh
Q 010595 346 DIAANCNLESNS 357 (506)
Q Consensus 346 DIAsnf~lKn~~ 357 (506)
|++++.+...|.
T Consensus 241 D~vAd~ra~TPt 252 (438)
T PRK00286 241 DFVADLRAPTPT 252 (438)
T ss_pred HHhhhccCCChH
Confidence 566666666663
No 63
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.67 E-value=79 Score=30.94 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 010595 462 KESVAKTKARLSDLELES 479 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~es 479 (506)
+..+..+.+.+..+|.+.
T Consensus 165 ks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 165 KSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.35 E-value=47 Score=33.18 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=22.1
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010595 424 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAK 467 (506)
Q Consensus 424 ~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e 467 (506)
+.++.+.++....++.++.+++.........+.++..++..+.+
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 44445555555555555555555554444444444444444433
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.13 E-value=18 Score=39.49 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 010595 461 LKESVAKTKARLSDLE 476 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE 476 (506)
.+.+|.++..+|..|+
T Consensus 92 ~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 92 LRKQIADLNARLNALE 107 (420)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3334444444444444
No 66
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.03 E-value=81 Score=38.82 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=18.0
Q ss_pred eccEEeecchHHHHHHHHhhcccccccC
Q 010595 324 VGKYHVRASISSILQSIISRYGDIAANC 351 (506)
Q Consensus 324 VnGFqVlpSqv~iV~~IFeKHpDIAsnf 351 (506)
..-|.+...++..+..++.+..+.....
T Consensus 791 ~~~~~~~~~~~~~~ee~~~~lr~~~~~l 818 (1293)
T KOG0996|consen 791 SDKARQHQEQLHELEERVRKLRERIPEL 818 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4556777777766666666666655443
No 67
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=75.94 E-value=17 Score=36.27 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhcccccc--cCcccchhH------------------------HHHHHHHHHHHHHHHhcchhhhccHHHH
Q 010595 333 ISSILQSIISRYGDIAA--NCNLESNSM------------------------RAYYLECLCSVVQELQSTSLMQMTKAKV 386 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAs--nf~lKn~~l------------------------Rs~YMn~LlsLIetL~ksplqeLS~~dL 386 (506)
-++.|+++|+-|||+-- -|..-.|.+ --+|+.-|+++|=+|..--+..|.+.++
T Consensus 58 ~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~ 137 (204)
T COG2178 58 AVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSF 137 (204)
T ss_pred HHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 46677888888888754 222222222 2369999999999999999999999999
Q ss_pred HHHHHHHhhHHh
Q 010595 387 KEMMAVLKDVES 398 (506)
Q Consensus 387 ~ea~~~L~dLe~ 398 (506)
.+|...+..|++
T Consensus 138 ~~Ae~~~~~ME~ 149 (204)
T COG2178 138 EEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 68
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=75.63 E-value=47 Score=27.84 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 463 ESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 463 eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
.+...+.+.+..|+.....|...+.++..-+..
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455566666777777777777777776666554
No 69
>PRK14140 heat shock protein GrpE; Provisional
Probab=75.54 E-value=5.5 Score=39.02 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 449 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 449 eeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
+.|.+.+.++.++++++.+++++|.++..+..++.++...=+....+|...+|+..||
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LL 94 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLL 94 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666677778888888888888888888877777788887777776664
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.15 E-value=1.4e+02 Score=33.21 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhc-chhhhccHHHHHHHHHHHhhHHhcCcchhhh--hhHHHHHHHHH
Q 010595 361 YYLECLCSVVQELQS-TSLMQMTKAKVKEMMAVLKDVESAQIDVDWL--RNILNEISEAI 417 (506)
Q Consensus 361 ~YMn~LlsLIetL~k-splqeLS~~dL~ea~~~L~dLe~aGfKVDWL--~kKLeEV~Ear 417 (506)
.+|+-|=.|+.+|+. .| +.|.+...-..+|+..||.++=+ .+.|..+.+..
T Consensus 212 ~~~~~iP~l~~~~~~~~P------~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i 265 (569)
T PRK04778 212 QIMEEIPELLKELQTELP------DQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQI 265 (569)
T ss_pred HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Confidence 345555555566554 33 56777777778888888888764 56666555444
No 71
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.10 E-value=70 Score=38.68 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhh-----hHHHHHHHHHHh
Q 010595 357 SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR-----NILNEISEAIEF 419 (506)
Q Consensus 357 ~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~-----kKLeEV~Eare~ 419 (506)
...+.+++.|-..|+.|-+.- +.+.+-...+..++-.+-+.-|++ .+++++.++++.
T Consensus 198 ~~~~~~l~~L~~~~~~l~kdV------E~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 198 TTKTEKLNRLEDEIDKLEKDV------ERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Confidence 344556666666666664443 344555555555555555555553 345555555543
No 72
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.91 E-value=31 Score=34.39 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 499 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~----~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~k 499 (506)
+..+...++|+++|..++|+-..+.+- +.--++.++|=.+|..+..-|.+.+..++-.+.+|..+
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335667899999999998888777762 22233667777789999988888899999999988654
No 73
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=74.42 E-value=53 Score=37.70 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=57.4
Q ss_pred HHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010595 387 KEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCV---NLLESTKKELESQMNELALKEKEVAGLKE 463 (506)
Q Consensus 387 ~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e---~~~e~~kkELEe~leeL~qKeKEv~d~~e 463 (506)
.+..-++.+|+.|+=++-.|+...+.+.+.-........+. +-++++ ..+..+..++.....++.+.+....+
T Consensus 235 aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~-~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~--- 310 (629)
T KOG0963|consen 235 AEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA-KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVE--- 310 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34455677777777777777776666555443322222222 001111 11222233333334444444444443
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
-++.++..+..||.+.......+.-++-|+..|
T Consensus 311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 311 EREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556677777777777777777777777777666
No 74
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=74.12 E-value=11 Score=37.91 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=23.2
Q ss_pred EeecchHHHHHHHHhhccccccc----CcccchhHHHHHHHH
Q 010595 328 HVRASISSILQSIISRYGDIAAN----CNLESNSMRAYYLEC 365 (506)
Q Consensus 328 qVlpSqv~iV~~IFeKHpDIAsn----f~lKn~~lRs~YMn~ 365 (506)
.|.+.....|..||-+-||.... +++.+..+...+...
T Consensus 45 ~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~~~~~l~~~ 86 (331)
T PRK03598 45 NLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAPYENALMQA 86 (331)
T ss_pred EeecccCcEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHH
Confidence 45555556667777777776543 566777666554433
No 75
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.11 E-value=80 Score=29.80 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010595 432 NCVNLLESTKKELESQMNELALKEKEVAGL 461 (506)
Q Consensus 432 ~~e~~~e~~kkELEe~leeL~qKeKEv~d~ 461 (506)
+..+.++.++.+|+.+..+|.+.+.++..+
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444443
No 76
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.08 E-value=1.2e+02 Score=37.12 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=66.4
Q ss_pred HHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhH-HhcCcchhhhhhHHHHH
Q 010595 335 SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV-ESAQIDVDWLRNILNEI 413 (506)
Q Consensus 335 ~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dL-e~aGfKVDWL~kKLeEV 413 (506)
-+..-||-.-|||. +-+..+.-|.-+++-|+++-. +..++..+..+ +..+-+|.||+..|.-+
T Consensus 149 ~f~~vi~~~Qge~~--~~~~~~~~rk~~~d~if~~~~--------------y~k~~~~~~~~~k~~~~~~~~~~~~~~~~ 212 (1311)
T TIGR00606 149 VLNNVIFCHQEDSN--WPLSEGKALKQKFDEIFSATR--------------YIKALETLRQVRQTQGQKVQEHQMELKYL 212 (1311)
T ss_pred HHhhceeeCCcccc--cccCChHHHHHHHHHHhhhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666678873 566678778877776666432 22233333322 23445666777666666
Q ss_pred HHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 414 SEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 414 ~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
...++.++....--.+............+.++.++.++.....++-.....+..+..+|..|+.....+...+..++..+
T Consensus 213 ~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i 292 (1311)
T TIGR00606 213 KQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKM 292 (1311)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65444333222211111111111111222233334444444444444444445555555555554444444444444433
No 77
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.52 E-value=77 Score=31.36 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 430 KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 430 Kd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
+......++.+.++++..-....+.++.+.+.+.++.++..++.+++.-...|.-.+..+-..++.|
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444555555555555555555555555555544444444444444
No 78
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=73.43 E-value=55 Score=35.83 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=0.0
Q ss_pred cccccCcCCCCCCCCCCCcccccc
Q 010595 151 SFGRKNKASDSQPGTPLTPRAVDK 174 (506)
Q Consensus 151 ~~~r~~~~~~~~~~~p~~~~~~~~ 174 (506)
.||.+.|+. ..+.|+|...+..
T Consensus 3 q~~~~tKk~--~~~~~~t~~~lr~ 24 (424)
T PF03915_consen 3 QYGDKTKKC--VLPNPLTINSLRL 24 (424)
T ss_dssp ------------------------
T ss_pred CcCCeeeee--eCCCCCCHHHHHH
Confidence 577777766 5566666444433
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.03 E-value=64 Score=37.29 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=13.6
Q ss_pred HHhcCcchhhhhhHHHHHHHHHH
Q 010595 396 VESAQIDVDWLRNILNEISEAIE 418 (506)
Q Consensus 396 Le~aGfKVDWL~kKLeEV~Eare 418 (506)
|....-+-|=|+.||-++.-+|+
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666664
No 80
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.75 E-value=23 Score=42.55 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=25.6
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 010595 403 VDWLRNILNEISEAIEFSTQHQTIDAAKANC 433 (506)
Q Consensus 403 VDWL~kKLeEV~Eare~~~~~~~leeeKd~~ 433 (506)
|.+|+.||-++-+.++=+.+|+.++..+..+
T Consensus 193 l~yieerLreLEeEKeeL~~Yqkldk~rr~l 223 (1200)
T KOG0964|consen 193 LKYIEERLRELEEEKEELEKYQKLDKERRSL 223 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHhhh
Confidence 4677789999999998899999998887643
No 81
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=72.41 E-value=38 Score=36.38 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010595 458 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 500 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS 500 (506)
..++++++.+++++|.+||.....++..+..+-.++=++...+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~ 113 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHES 113 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 3445566677777777777777777777766666666654443
No 82
>PLN02939 transferase, transferring glycosyl groups
Probab=72.02 E-value=48 Score=39.84 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 468 TKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 468 ~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
+.+|+.-||.+++-|...+..+.||.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 255 TEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444443
No 83
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.75 E-value=1.4e+02 Score=37.17 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=67.8
Q ss_pred hccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010595 380 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT-IDAAKANCVNLLESTKKELESQMNELALKEKEV 458 (506)
Q Consensus 380 eLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~-leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv 458 (506)
.-|..|+..|...+.+.+.|.=+.+=++.+.++|.|+-+.+++.+. ++.+-+..+..++...+-|.+-.++++-.|+.+
T Consensus 1535 ~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~ 1614 (1758)
T KOG0994|consen 1535 SRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLA 1614 (1758)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788889999999999998899999999999998876664432 111222223344444555665566666666666
Q ss_pred HhHHHHHHHHHHHHHHHHHhhh
Q 010595 459 AGLKESVAKTKARLSDLELESN 480 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~LE~ess 480 (506)
..+.+|+.++..++..|+.+..
T Consensus 1615 ~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1615 TSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777665543
No 84
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.74 E-value=21 Score=36.97 Aligned_cols=38 Identities=8% Similarity=0.219 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchh
Q 010595 465 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 502 (506)
Q Consensus 465 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~ 502 (506)
..+..-.|.+++.+...+...+..+...+++...-.++
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~ 138 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVY 138 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 33445556666666666666667777777666544443
No 85
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=71.57 E-value=92 Score=36.38 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhh
Q 010595 366 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 366 LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~k 408 (506)
|+.-++.+++.. +.+...|.+....+..|.. .|+||+.
T Consensus 284 L~~~L~e~Q~qL--e~a~~als~q~eki~~L~e---~l~aL~~ 321 (717)
T PF09730_consen 284 LLSNLQESQKQL--EHAQGALSEQQEKINRLTE---QLDALRK 321 (717)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 555556665555 6777888888888877773 3788877
No 86
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.13 E-value=1.4e+02 Score=36.62 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=11.4
Q ss_pred HHHHHHhhHHhcCcchhhhhhHHH
Q 010595 388 EMMAVLKDVESAQIDVDWLRNILN 411 (506)
Q Consensus 388 ea~~~L~dLe~aGfKVDWL~kKLe 411 (506)
.+.....++.++.-.|+.|+..+.
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~ 816 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQ 816 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444554555555554443
No 87
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=71.05 E-value=47 Score=36.06 Aligned_cols=109 Identities=14% Similarity=0.274 Sum_probs=53.6
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHH--HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA--IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK 456 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ea--re~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeK 456 (506)
.......|..+...|.++++.. .=|+..++.+.+. +++--..+.|.+++-..+++-+.+..-+|-.+.
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~---~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~------- 276 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQ---SRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQN------- 276 (395)
T ss_pred cccccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------
Confidence 3444556666666677666543 3345556655542 123333455666666544433333333333333
Q ss_pred HHHhHHHHHHHHHHHHHHH-HHhhhhHHHHHHHhhhhhhhcc
Q 010595 457 EVAGLKESVAKTKARLSDL-ELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~L-E~ess~L~k~v~~~kSKV~kF~ 497 (506)
||..++..+..|.+|+.=. .+..-+|...|...+.+|.|.+
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444455555555422 2333345555555665555544
No 88
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.05 E-value=83 Score=28.67 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 010595 357 SMRAYYLECLCSVVQELQ 374 (506)
Q Consensus 357 ~lRs~YMn~LlsLIetL~ 374 (506)
.--..-+|+|-+||..-.
T Consensus 31 ~~~~~vin~i~~Ll~~~~ 48 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRD 48 (151)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 333445566666665443
No 89
>PRK14160 heat shock protein GrpE; Provisional
Probab=70.97 E-value=18 Score=36.03 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=40.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 454 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 454 KeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
.++++..+++++.+++.++.++..+.....+++.-=+....+|....|+-+||
T Consensus 66 l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LL 118 (211)
T PRK14160 66 LKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELL 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555667778889999998888888888888888888888777777665
No 90
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.95 E-value=71 Score=37.31 Aligned_cols=87 Identities=24% Similarity=0.334 Sum_probs=44.7
Q ss_pred hcCcchhhhhhHHHHHHHHHHhhhhh------hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHH
Q 010595 398 SAQIDVDWLRNILNEISEAIEFSTQH------QTIDAAKANCVNLLESTKKELESQMNELALKE---KEVAGLKESVAKT 468 (506)
Q Consensus 398 ~aGfKVDWL~kKLeEV~Eare~~~~~------~~leeeKd~~e~~~e~~kkELEe~leeL~qKe---KEv~d~~eRv~e~ 468 (506)
..-+..+||+.+++.+...++-+... +++.++.+ ..+...+++...++.+.... .++.++++++.++
T Consensus 523 ~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~----~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~ 598 (908)
T COG0419 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELR----QLEDRLQELKELLEELRLLRTRKEELEELRERLKEL 598 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466688888888887666432211 11122211 22233444555555555555 5555555555555
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 010595 469 KARLSDLELESNRLEQIIQA 488 (506)
Q Consensus 469 k~RL~~LE~ess~L~k~v~~ 488 (506)
+.++.+|+...+.+...+..
T Consensus 599 ~~~~~~l~~~~~~l~~~~~~ 618 (908)
T COG0419 599 KKKLKELEERLSQLEELLQS 618 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555544444433
No 91
>PRK10869 recombination and repair protein; Provisional
Probab=70.87 E-value=85 Score=34.97 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 010595 403 VDWLRNILNEISEAIEFST 421 (506)
Q Consensus 403 VDWL~kKLeEV~Eare~~~ 421 (506)
|+.++.||..+...++.+.
T Consensus 298 l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 298 LAELEQRLSKQISLARKHH 316 (553)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4777777777776554433
No 92
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.77 E-value=52 Score=34.18 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 442 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 442 kELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
++|+...++|.+.+.+++.....+.+++.|+.+......+|
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333
No 93
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=70.53 E-value=1.3e+02 Score=31.98 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=57.6
Q ss_pred HHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhh-hhhHHHHHH
Q 010595 336 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-LRNILNEIS 414 (506)
Q Consensus 336 iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDW-L~kKLeEV~ 414 (506)
.|...=...=.-|.+-+..|..||...-.+|-..+..|..-- +-++ .-...-+.++..|.-+|.| |.+-+.||.
T Consensus 201 ~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~--~~vn---~al~~Ri~et~~ak~~Le~ql~~~~~ei~ 275 (384)
T PF03148_consen 201 SWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQA--DAVN---AALRKRIHETQEAKNELEWQLKKTLQEIA 275 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444455777888899999999888888888886433 1111 1223445666777777777 556667777
Q ss_pred HHHHhhhhhhhHHHHHHh
Q 010595 415 EAIEFSTQHQTIDAAKAN 432 (506)
Q Consensus 415 Eare~~~~~~~leeeKd~ 432 (506)
+..+.+..-..+-..|..
T Consensus 276 ~~e~~i~~L~~ai~~k~~ 293 (384)
T PF03148_consen 276 EMEKNIEDLEKAIRDKEG 293 (384)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666655555555455543
No 94
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.24 E-value=47 Score=37.21 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595 447 QMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 447 ~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k 484 (506)
..++|...++++.+++..+..+..++.+++.....+.+
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 95
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.98 E-value=39 Score=39.97 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 010595 435 NLLESTKKELESQ 447 (506)
Q Consensus 435 ~~~e~~kkELEe~ 447 (506)
..+|++++|||.+
T Consensus 396 e~rEaar~ElEkq 408 (1118)
T KOG1029|consen 396 ERREAAREELEKQ 408 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 4455566776655
No 96
>PLN02320 seryl-tRNA synthetase
Probab=69.96 E-value=51 Score=36.84 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 500 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS 500 (506)
+++++.+++++|..||.+...++..+..+=..+=++...+
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~ 174 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPD 174 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 4445566666666666666666665555555555554443
No 97
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.92 E-value=81 Score=28.59 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHHH----HHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAK---------TKAR----LSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e---------~k~R----L~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
..++..+.++.+.+.++...+.+..+...+..+ +..+ +.+++.++..|.+.+.+-..-|+.|
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~F 129 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDF 129 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 334444555555555555554444443333322 2333 3455666666544443333333333
No 98
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=69.92 E-value=1.2e+02 Score=33.26 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=38.8
Q ss_pred EEeccEEeecchHHHHHHHHhhcccccccCcccch--hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHh
Q 010595 322 VSVGKYHVRASISSILQSIISRYGDIAANCNLESN--SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLK 394 (506)
Q Consensus 322 VdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~--~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~ 394 (506)
..+.-|+++-.....++.+..-.|+|.....-.+. ..-...+.-+..=|..|.+-- .+|....-..+...|.
T Consensus 210 ~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l-~~l~~~~~~~l~~~L~ 283 (582)
T PF09731_consen 210 KIVEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKEL-AELKEEEEEELERALE 283 (582)
T ss_pred hhhhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44556777777777778888888998766655444 223333333333334443322 4444444334433333
No 99
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.70 E-value=42 Score=33.14 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=5.1
Q ss_pred chhhhhhHH
Q 010595 402 DVDWLRNIL 410 (506)
Q Consensus 402 KVDWL~kKL 410 (506)
+.+|+..+.
T Consensus 76 ~~GWV~~~~ 84 (206)
T PRK10884 76 RTAWIPLKQ 84 (206)
T ss_pred CEEeEEHHH
Confidence 346766654
No 100
>PRK14161 heat shock protein GrpE; Provisional
Probab=69.56 E-value=8.9 Score=37.10 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=34.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 456 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 456 KEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
.+++++++++.++++++.++..+..++.++..--+....+|...+|+.+||
T Consensus 26 ~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LL 76 (178)
T PRK14161 26 PEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELL 76 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556666777777777777777777777777777777777766664
No 101
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.06 E-value=1.2e+02 Score=29.66 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=8.4
Q ss_pred hhhhHHHHHHHHHHhhh
Q 010595 405 WLRNILNEISEAIEFST 421 (506)
Q Consensus 405 WL~kKLeEV~Eare~~~ 421 (506)
=|+.++++.......+.
T Consensus 56 ~~e~~~~~~~~~~~~~~ 72 (219)
T TIGR02977 56 ELERRVSRLEAQVADWQ 72 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555554444333
No 102
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=68.80 E-value=1.1e+02 Score=29.01 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHh
Q 010595 438 ESTKKELESQMNELALKEKEVAG-LKESVAKTKARLSDLELE 478 (506)
Q Consensus 438 e~~kkELEe~leeL~qKeKEv~d-~~eRv~e~k~RL~~LE~e 478 (506)
+..+++-++=++++.++..+|.+ .++.+..+++.-+.|+.+
T Consensus 103 ~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~~ 144 (145)
T PF14942_consen 103 EQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEKK 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456666677888888888888 577777777777766643
No 103
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=68.47 E-value=80 Score=27.49 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
|+..++.|.++..+++..-.+|-++.+++..||.-...|..-...+.+|+++
T Consensus 47 l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 47 LEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444445555555555555566667777777777777777777777777754
No 104
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.21 E-value=1.3e+02 Score=36.71 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHH--------HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 450 ELALKEKEVAGLKESV--------AKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv--------~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
++.++++.+.+++++. .++...|.+|+.+..+++..+..|+.+...|.
T Consensus 373 ~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444 33334444444444444444455555555543
No 105
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.06 E-value=98 Score=37.68 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhHHhcCcchhhhhhHH
Q 010595 383 KAKVKEMMAVLKDVESAQIDVDWLRNIL 410 (506)
Q Consensus 383 ~~dL~ea~~~L~dLe~aGfKVDWL~kKL 410 (506)
..+|..+...|..|+...-|..=|+..|
T Consensus 690 q~el~~le~eL~~le~~~~kf~~l~~ql 717 (1174)
T KOG0933|consen 690 QKELEALERELKSLEAQSQKFRDLKQQL 717 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666555555554443
No 106
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.78 E-value=94 Score=31.36 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=9.9
Q ss_pred cchhhhhhHHHHHHHHHHh
Q 010595 401 IDVDWLRNILNEISEAIEF 419 (506)
Q Consensus 401 fKVDWL~kKLeEV~Eare~ 419 (506)
-|++=|++...+|....+.
T Consensus 8 ~K~~~lek~k~~i~~e~~~ 26 (230)
T PF10146_consen 8 NKTLELEKLKNEILQEVES 26 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 107
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.67 E-value=1e+02 Score=35.07 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
..++...+.-|.+++.+++-++.++..|.+-+.+|..+..+|...|..++.
T Consensus 140 re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 140 REKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333444444555555555555555555555555555555555555555544
No 108
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.01 E-value=1.1e+02 Score=34.12 Aligned_cols=9 Identities=0% Similarity=0.431 Sum_probs=3.5
Q ss_pred ccHHHHHHH
Q 010595 381 MTKAKVKEM 389 (506)
Q Consensus 381 LS~~dL~ea 389 (506)
|+++++..+
T Consensus 342 l~~~e~~~~ 350 (569)
T PRK04778 342 LNESELESV 350 (569)
T ss_pred cCchhHHHH
Confidence 334443333
No 109
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.77 E-value=1.5e+02 Score=30.80 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 010595 359 RAYYLECLCSVVQEL 373 (506)
Q Consensus 359 Rs~YMn~LlsLIetL 373 (506)
|.+++-+|+++|-..
T Consensus 3 kk~~~a~~~s~v~~s 17 (265)
T COG3883 3 KKILLAVLLSLVIIS 17 (265)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344455555555444
No 110
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.52 E-value=22 Score=36.90 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhhHHHHHHHhhhhhhhccccch
Q 010595 461 LKESVAKTKARLSDLEL-------ESNRLEQIIQATQSKVTKFSQKSL 501 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~-------ess~L~k~v~~~kSKV~kF~~kSl 501 (506)
+..++..+..||.+++. +..+-.+.+..++.......|-+|
T Consensus 268 l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 268 LEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHH
Confidence 33444455555554443 333334555666666666555544
No 111
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.41 E-value=62 Score=39.70 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
.+.++.-++.+++..+..|+..+.+++.+...+.++..
T Consensus 536 ~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 536 SLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444445555555555555544444444444
No 112
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.38 E-value=1.5e+02 Score=33.57 Aligned_cols=103 Identities=14% Similarity=0.250 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHH
Q 010595 356 NSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVN 435 (506)
Q Consensus 356 ~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~ 435 (506)
+-++++|+.=|-.|+..|+... +....+. -.-.=|.++|+.. +.+|+.++.
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~ad-------------SKa~~f~---~Ec~aL~~rL~~a-------------E~ek~~l~e 462 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHAD-------------SKAVHFY---AECRALQKRLESA-------------EKEKESLEE 462 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH---HHHHHHHHHHHHH-------------HHHHHHHHH
Confidence 5589999999988888876554 1111111 0112244444433 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010595 436 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 436 ~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~k 490 (506)
.++.+.+.+....+||.--+.- -..++..|.++|..|-+..++-...|..+|
T Consensus 463 eL~~a~~~i~~LqDEL~TTr~N---YE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 463 ELKEANQNISRLQDELETTRRN---YEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444433333332233222222 245788888888888888888777777766
No 113
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.11 E-value=59 Score=27.25 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010595 404 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 404 DWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ 477 (506)
.=|+.||+. ++..|+.+..+-. .+++++.....|=++..+.+..++.||++|=.||..||.
T Consensus 3 ~~Le~kle~------Li~~~~~L~~EN~-------~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 3 QALAAQVEH------LLEYLERLKSENR-------LLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345666663 3334444444322 234444444445555666666778899999999988874
No 114
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.49 E-value=33 Score=41.15 Aligned_cols=11 Identities=45% Similarity=0.929 Sum_probs=8.6
Q ss_pred CCcchhhHHHh
Q 010595 74 NPYHECGERCF 84 (506)
Q Consensus 74 NPyHeC~e~C~ 84 (506)
--|-+|.+.|-
T Consensus 55 ~qYF~Cd~ncG 65 (1243)
T KOG0971|consen 55 VQYFECDENCG 65 (1243)
T ss_pred eeeEecCCCcc
Confidence 35889999984
No 115
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.41 E-value=1.4e+02 Score=29.93 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010595 471 RLSDLE 476 (506)
Q Consensus 471 RL~~LE 476 (506)
++..|+
T Consensus 125 ~i~~L~ 130 (312)
T PF00038_consen 125 QIQSLK 130 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 116
>PRK12704 phosphodiesterase; Provisional
Probab=65.30 E-value=96 Score=34.55 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=6.5
Q ss_pred hhHHHHHHHhhhhhhhc
Q 010595 480 NRLEQIIQATQSKVTKF 496 (506)
Q Consensus 480 s~L~k~v~~~kSKV~kF 496 (506)
.++.+.+.....++++.
T Consensus 131 ~~~~~~~~~~~~~l~~~ 147 (520)
T PRK12704 131 EELEELIEEQLQELERI 147 (520)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333334444433
No 117
>PLN02678 seryl-tRNA synthetase
Probab=65.22 E-value=70 Score=35.13 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 460 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
++.+++.++++.|..|+.+...++..+..+-..+=++
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444555566666666666666655555555554444
No 118
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=65.20 E-value=1e+02 Score=33.30 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=22.2
Q ss_pred HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHH
Q 010595 396 VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLES 439 (506)
Q Consensus 396 Le~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~ 439 (506)
|....-+|++|+.+|.-......+-.+.+.++.-.....+.+..
T Consensus 279 L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a~~~ 322 (432)
T TIGR00237 279 LHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNK 322 (432)
T ss_pred HHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777754444443333444444444444444333
No 119
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=65.10 E-value=1.6e+02 Score=29.72 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 433 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
..++-+...++.++....|+-++-+.-...+|.+.-...+.+|+.+..-+..++.++..+.+++.
T Consensus 72 Ak~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~ 136 (205)
T KOG1003|consen 72 AKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Confidence 34455556677777777888888888888888888889999999999999999998888887763
No 120
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=64.71 E-value=1.8e+02 Score=35.07 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=9.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 010595 456 KEVAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 456 KEv~d~~eRv~e~k~RL~~LE~ 477 (506)
..+++..++|.+.+.|+-+|++
T Consensus 386 ~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 386 ELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 3333344445555554444443
No 121
>PRK14143 heat shock protein GrpE; Provisional
Probab=64.56 E-value=13 Score=37.51 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
++.+++.++-++..+..++.+++.-=+....+|...+|+-.||
T Consensus 82 e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lL 124 (238)
T PRK14143 82 ELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEIL 124 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554555555555555554443
No 122
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.54 E-value=1.7e+02 Score=32.74 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=7.7
Q ss_pred eecchHHHHHHHHh
Q 010595 329 VRASISSILQSIIS 342 (506)
Q Consensus 329 VlpSqv~iV~~IFe 342 (506)
.+-||.++=+..++
T Consensus 325 ll~sqleSqr~y~e 338 (493)
T KOG0804|consen 325 LLTSQLESQRKYYE 338 (493)
T ss_pred hhhhhhhHHHHHHH
Confidence 55566555555554
No 123
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=64.50 E-value=50 Score=32.64 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010595 447 QMNELALKEKEVAGLKESVAKTKARLSDLELE 478 (506)
Q Consensus 447 ~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~e 478 (506)
.++++-..|.++.+.+.+|+.++++|..|+..
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777777777888888888777654
No 124
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.41 E-value=42 Score=40.51 Aligned_cols=39 Identities=28% Similarity=0.482 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 488 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~ 488 (506)
+|..+..++.++..-+.+.++|+.++..+...+.+....
T Consensus 426 ~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~de 464 (1200)
T KOG0964|consen 426 ELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDE 464 (1200)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555444444433
No 125
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=64.27 E-value=30 Score=37.24 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=9.2
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 010595 456 KEVAGLKESVAKTKARLSDL 475 (506)
Q Consensus 456 KEv~d~~eRv~e~k~RL~~L 475 (506)
+|+.+++++++++.++|..|
T Consensus 83 ~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 83 EEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555554443
No 126
>PRK11519 tyrosine kinase; Provisional
Probab=64.21 E-value=2.1e+02 Score=32.76 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=14.3
Q ss_pred ccccCcccchhHHHHHHHHHHH
Q 010595 347 IAANCNLESNSMRAYYLECLCS 368 (506)
Q Consensus 347 IAsnf~lKn~~lRs~YMn~Lls 368 (506)
|...|.-.+|.+=...+|.|..
T Consensus 230 i~Is~~~~dP~~Aa~iaN~l~~ 251 (719)
T PRK11519 230 LSLTYTGEDREQIRDILNSITR 251 (719)
T ss_pred EEEEEEcCCHHHHHHHHHHHHH
Confidence 4455666777777767766644
No 127
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.80 E-value=76 Score=36.73 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=11.7
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 010595 403 VDWLRNILNEISEAIEFST 421 (506)
Q Consensus 403 VDWL~kKLeEV~Eare~~~ 421 (506)
+.=|++||.|-..+|..+.
T Consensus 490 l~~LEkrL~eE~~~R~~lE 508 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLE 508 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777777766665444
No 128
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=63.70 E-value=45 Score=28.99 Aligned_cols=58 Identities=12% Similarity=0.358 Sum_probs=33.7
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhhHHhcCcchhhh
Q 010595 345 GDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDWL 406 (506)
Q Consensus 345 pDIAsnf~lKn~~lRs~YMn~LlsLIetL~--ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL 406 (506)
+++|.-|.+.-..+| +|-+. +||.... .+.-+-.+.++|..+ ..+..|++.||-|+=.
T Consensus 4 ~e~a~~~gvs~~tlr-~ye~~--gll~~~~r~~~gyR~Y~~~~l~~l-~~I~~lr~~G~sL~eI 63 (113)
T cd01109 4 KEVAEKTGLSADTLR-YYEKE--GLLPPVKRDENGIRDFTEEDLEWL-EFIKCLRNTGMSIKDI 63 (113)
T ss_pred HHHHHHHCcCHHHHH-HHHHC--CCCCCCCcCCCCCccCCHHHHHHH-HHHHHHHHcCCCHHHH
Confidence 455555555555555 44332 3332111 122367888888866 5666789999998633
No 129
>PRK00106 hypothetical protein; Provisional
Probab=63.41 E-value=90 Score=35.16 Aligned_cols=32 Identities=3% Similarity=0.243 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 467 KTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 467 e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
++..+..+|+.....+++.+.....++++..|
T Consensus 133 eLe~reeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 133 SLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444444444444444444445554443
No 130
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.98 E-value=2.5e+02 Score=34.44 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=3.0
Q ss_pred HHHhcch
Q 010595 371 QELQSTS 377 (506)
Q Consensus 371 etL~ksp 377 (506)
..|.+++
T Consensus 729 ~r~~~~e 735 (1174)
T KOG0933|consen 729 KRLEQNE 735 (1174)
T ss_pred HHHhcCh
Confidence 3344444
No 131
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=62.95 E-value=1.2e+02 Score=28.93 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010595 433 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
.+..+..+..+|+++-+.+.....|+.-..-......+++..|+.+...|=++....
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555455555555666666666677788888888887775555443
No 132
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.45 E-value=1.8e+02 Score=35.49 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=56.9
Q ss_pred cccccccCcccc----hhHHHHHHHHHHHHHHHHhcch-------hhhccHHHHH----HHHHHHhhHHhcCcchhhhhh
Q 010595 344 YGDIAANCNLES----NSMRAYYLECLCSVVQELQSTS-------LMQMTKAKVK----EMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 344 HpDIAsnf~lKn----~~lRs~YMn~LlsLIetL~ksp-------lqeLS~~dL~----ea~~~L~dLe~aGfKVDWL~k 408 (506)
|.-=|.+++=|- .-+|.+||-=+-.=|+.|..-. ---|+++... +--..-..|++..-+|+=|++
T Consensus 383 YA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 383 YAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEK 462 (1041)
T ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555442 2367888877777777775322 1124555441 112223344555578888888
Q ss_pred HHHHHHHHHH-hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010595 409 ILNEISEAIE-FSTQHQTIDAAKANCVNLLESTKKELESQMNELAL 453 (506)
Q Consensus 409 KLeEV~Eare-~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~q 453 (506)
.|.++.+.-- .....+.+.++++.+...+...-++|+.+.+++.+
T Consensus 463 ~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~ 508 (1041)
T KOG0243|consen 463 QLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQ 508 (1041)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776542 22233444555554444444444444444333333
No 133
>PRK14154 heat shock protein GrpE; Provisional
Probab=62.40 E-value=15 Score=36.52 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 457 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
++.++++++.++++++.++..+..++.+++.--+....+|...+|+-.||
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LL 109 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLL 109 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666777777777777777777777777777777766666654
No 134
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=62.28 E-value=78 Score=31.84 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 440 TKKELESQMNELALKEKE------------VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKE------------v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
++-.||.+|+.|.-.+.+ +..+++++.|-.+|+=.||.+.++.+|.- .-.|.+++|.
T Consensus 29 LR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY-LEEs~mrq~a 97 (205)
T PF12240_consen 29 LRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKY-LEESAMRQFA 97 (205)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 455566666666443332 44467788888889999999999988876 5677777774
No 135
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.90 E-value=46 Score=35.06 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLE 476 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE 476 (506)
-|++.+|||+.+++-|+-|+..|.+-.
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 467777899999999999999998753
No 136
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=61.14 E-value=1.1e+02 Score=31.22 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=32.5
Q ss_pred chhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHH
Q 010595 376 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 412 (506)
Q Consensus 376 splqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeE 412 (506)
.||+.+.+.||.++....+-|+..-+.+|-.+.++..
T Consensus 110 ~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~ 146 (246)
T cd07618 110 DPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQ 146 (246)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHh
Confidence 3568888999999999999999999999999999864
No 137
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.12 E-value=1.4e+02 Score=27.53 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 010595 461 LKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L 482 (506)
++.+|.+...++..++.....+
T Consensus 150 l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 150 LEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 138
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.05 E-value=1e+02 Score=35.38 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 441 KKELESQMNELALKEKEVAG-LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d-~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
-+++.+++..+..+.+.|.. |..+..+.+.++.++|..... ++|..+..|
T Consensus 148 i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~------~lk~~l~~~ 198 (611)
T KOG2398|consen 148 IKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLS------FLKEELWLF 198 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 34455555555555555544 677777777777776655443 355555444
No 139
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=61.02 E-value=1.5e+02 Score=28.04 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 010595 465 VAKTKARLSDLE 476 (506)
Q Consensus 465 v~e~k~RL~~LE 476 (506)
...+++|+.+||
T Consensus 89 lq~~q~kv~eLE 100 (140)
T PF10473_consen 89 LQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 140
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=60.86 E-value=2.7e+02 Score=31.94 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhh--hhhHHHHHHHHH
Q 010595 360 AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNEISEAI 417 (506)
Q Consensus 360 s~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDW--L~kKLeEV~Ear 417 (506)
..||+-+=+||-+|++.- -+.|.+.-.-..+|..+|+.|+= +.++|+.+.+..
T Consensus 210 ~~~~e~IP~L~~e~~~~l-----P~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l 264 (570)
T COG4477 210 RSIMERIPSLLAELQTEL-----PGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQL 264 (570)
T ss_pred HHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHH
Confidence 478999999999998655 35667777788899999998864 344555444444
No 141
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=60.77 E-value=1.3e+02 Score=38.66 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=70.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcchh--hhc------c---HHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHH-HHh
Q 010595 352 NLESNSMRAYYLECLCSVVQELQSTSL--MQM------T---KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA-IEF 419 (506)
Q Consensus 352 ~lKn~~lRs~YMn~LlsLIetL~kspl--qeL------S---~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ea-re~ 419 (506)
...+..+++-| ..++..|+.|+.+.- +.. | .+++......|.-|.+-.+=| |.=++-..+. .++
T Consensus 1173 k~e~~~L~qq~-~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~L---Ree~~~~~~k~qEl 1248 (1822)
T KOG4674|consen 1173 KRENARLKQQV-ASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVL---REENEANLEKIQEL 1248 (1822)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH
Confidence 34455555554 556666666664330 111 1 234445555555555555432 2222222111 244
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010595 420 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 471 (506)
Q Consensus 420 ~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~R 471 (506)
.++...+..+....+..+.+++.+|.....+|...+.++..|+.|..++...
T Consensus 1249 ~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1249 RDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888888899988889999999999998888777544
No 142
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=60.64 E-value=2.2e+02 Score=29.71 Aligned_cols=114 Identities=12% Similarity=0.149 Sum_probs=62.6
Q ss_pred hcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCc----chhhhhhHHHHHH-HHH
Q 010595 343 RYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQI----DVDWLRNILNEIS-EAI 417 (506)
Q Consensus 343 KHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGf----KVDWL~kKLeEV~-Ear 417 (506)
..++-...|-...+.-=+.|-+-+|+-|..+.... ...-|.+....+.++.-..| +-.||.+-+..+. -..
T Consensus 12 ~~~~~i~~~G~~~~~~~a~~s~~iL~~v~~~d~~~----vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~~~~~~ 87 (333)
T PF05816_consen 12 TNPDAILSFGAEAQEKIAQFSDRILDRVRNKDSGE----VGELLNELRKEMDELDPSELKDEKKKGFLGKLFGKAKNSLE 87 (333)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HhHHHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhhhhHHH
Confidence 33444444444444444566666665565553333 33445555555555444443 2355555444333 344
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 418 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 418 e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
+++.+|+.+...-+.+-..++..+.+|......|.+...+..+
T Consensus 88 ~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~ 130 (333)
T PF05816_consen 88 RYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWE 130 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899988887776666666666666665555555444443
No 143
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.62 E-value=93 Score=34.66 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
.++-+..|+.+|+.+.++|-..+.++||=.++..+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklae 332 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAE 332 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445678888888888888888888887777654
No 144
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=60.04 E-value=61 Score=36.71 Aligned_cols=32 Identities=38% Similarity=0.466 Sum_probs=14.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010595 458 VAGLKESVAKTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
+.-.++++.++..||.+|+++..-+.-.+..+
T Consensus 136 ~~~~re~~~~~~~~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 136 RRGAREKLDDYLSRLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 33344444444455555554444443333333
No 145
>PRK14127 cell division protein GpsB; Provisional
Probab=59.87 E-value=73 Score=28.96 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=6.8
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 010595 456 KEVAGLKESVAKTKARLS 473 (506)
Q Consensus 456 KEv~d~~eRv~e~k~RL~ 473 (506)
.++..+++++.++..|+.
T Consensus 51 ~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 51 QENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333333333333333333
No 146
>PRK14139 heat shock protein GrpE; Provisional
Probab=59.55 E-value=20 Score=35.11 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 505 (506)
++.++++++-++..+..+..+++.-=+....+|...+|+.+|
T Consensus 47 e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~L 88 (185)
T PRK14139 47 KAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESL 88 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555554455555555544444444
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=59.47 E-value=2.4e+02 Score=31.06 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhh-----HHHHHHh
Q 010595 358 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT-----IDAAKAN 432 (506)
Q Consensus 358 lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~-----leeeKd~ 432 (506)
+-..|++=++.+++.|.+.. ..|+++-|.-+...|..++..+-... ..+|.+..+..+..+.... ++..+..
T Consensus 257 ~g~~l~~k~~~~~e~l~~~~-~~l~~e~l~~~~~~l~~l~~~~~~~~--~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~ 333 (429)
T PF10037_consen 257 WGLVLYGKALDAMELLASID-LKLCKEVLDLLQEVLEKLESESDEES--VKKLQEAVDKCEKSNSFEELLLEEVKQSKNK 333 (429)
T ss_pred HhHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHhcccccchhh--HHHHHHHHhhhhhccchHHHhHHHHHHhhhh
Confidence 33567777777888887775 66777777777777777665332211 1223332222111111111 1111111
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhhhhH
Q 010595 433 CVNLLES---TKKELESQMNELALKEKEVAG-----LKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 433 ~e~~~e~---~kkELEe~leeL~qKeKEv~d-----~~eRv~e~k~RL~~LE~ess~L 482 (506)
.+.++.. .=++.++..+.+.+.+.+.-+ .++|++++...+.+|+.+...+
T Consensus 334 ~E~~l~~q~~~f~~W~~~rq~~~~~q~~~l~~~~~~~~~rl~~ie~~~~~l~e~e~~l 391 (429)
T PF10037_consen 334 EEPLLPEQCERFQEWEEKRQSLLKEQSERLLTLTQLRKERLEEIEKEDKELYEQEQQL 391 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 123455556666666666666 6778888888888888777665
No 148
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.27 E-value=1.9e+02 Score=29.64 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=31.9
Q ss_pred hhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHH
Q 010595 377 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 412 (506)
Q Consensus 377 plqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeE 412 (506)
||+.|-+.||.++....+-|+..-+.+|--+.||.-
T Consensus 111 PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~ 146 (248)
T cd07619 111 PLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQ 146 (248)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Confidence 568888999999999999999999999999999863
No 149
>PRK14158 heat shock protein GrpE; Provisional
Probab=59.22 E-value=20 Score=35.21 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 459 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
.+.++++.++++++.++..+..++.+++.-=+..+.+|...+|+-+||
T Consensus 50 ~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lL 97 (194)
T PRK14158 50 AAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEIL 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666666666666666666555544
No 150
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=59.15 E-value=77 Score=32.95 Aligned_cols=38 Identities=11% Similarity=0.308 Sum_probs=32.9
Q ss_pred cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 010595 344 YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 382 (506)
Q Consensus 344 HpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS 382 (506)
-|+.-.+|++-+-.++.+=...+..+|+.+|-+. +.|.
T Consensus 56 ~~~~~k~C~iG~g~~k~mtn~t~mk~IeeVq~S~-~~Lr 93 (264)
T PF07246_consen 56 MPGFNKKCRIGSGDLKEMTNKTMMKIIEEVQLSI-SNLR 93 (264)
T ss_pred CCccccCcccCCcchhhcchhhHHHHHHHHhccc-ccce
Confidence 4555689999999999999999999999999877 6665
No 151
>PRK14153 heat shock protein GrpE; Provisional
Probab=58.92 E-value=17 Score=35.88 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 457 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
++.++++++.+++.++.++..+..++.+++.--+....+|....|+.+||
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LL 90 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLL 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455556666666666666666666666666666666666655554
No 152
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.78 E-value=97 Score=37.79 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010595 440 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 492 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSK 492 (506)
.+..|+....||..-+.++.++.-++.+++.+|...|.....|.+.+--+..+
T Consensus 702 ~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 702 LKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555554444444444333333
No 153
>PRK14155 heat shock protein GrpE; Provisional
Probab=58.78 E-value=14 Score=36.70 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
++.+++.++-++..+..++.+++.-=+....+|...+|+.+||
T Consensus 28 e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 70 (208)
T PRK14155 28 EVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLL 70 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555566665555555554
No 154
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.66 E-value=44 Score=31.05 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=4.8
Q ss_pred ccHHHHHHHHHH
Q 010595 381 MTKAKVKEMMAV 392 (506)
Q Consensus 381 LS~~dL~ea~~~ 392 (506)
++++-+..+...
T Consensus 30 ~~K~~v~k~Ld~ 41 (169)
T PF07106_consen 30 VGKTAVQKALDS 41 (169)
T ss_pred ccHHHHHHHHHH
Confidence 444444333333
No 155
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.59 E-value=3.8e+02 Score=32.91 Aligned_cols=71 Identities=13% Similarity=-0.015 Sum_probs=37.4
Q ss_pred EEeccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHH
Q 010595 322 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 322 VdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe 397 (506)
..|||+.|.-|.++.+-.=|..-=|=---|.++-..-==+=| +=|+.|-.+- ..+..++|-..+..|.+|.
T Consensus 117 y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L----~pi~LL~eTe-kAig~~~ll~~h~eL~~lr 187 (1072)
T KOG0979|consen 117 YFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARL----SPIELLVETE-KAIGAEELLQYHIELMDLR 187 (1072)
T ss_pred eeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcC----ChHHHHHHHH-HhcCchhhHHHHHHHHHHH
Confidence 789999999888776666665443333333333222111111 2223333333 5566666666666665554
No 156
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.49 E-value=1.6e+02 Score=27.58 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchh
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 502 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~ 502 (506)
..+.-.+.++.....++....+++.+..+.+...++.|..+..+..++......++.+-.-+..-+|+
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 33444577777777788888888888888899999999999999999988888888777766555554
No 157
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=58.49 E-value=1.2e+02 Score=26.22 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhHH
Q 010595 385 KVKEMMAVLKDVE 397 (506)
Q Consensus 385 dL~ea~~~L~dLe 397 (506)
++.+...++..|+
T Consensus 28 ~~~E~~~v~~EL~ 40 (105)
T cd00632 28 QLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 158
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.32 E-value=1.1e+02 Score=35.24 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.7
Q ss_pred cCcccchhHHH
Q 010595 350 NCNLESNSMRA 360 (506)
Q Consensus 350 nf~lKn~~lRs 360 (506)
++.+.|.|-|-
T Consensus 335 ~~~~~ddH~RD 345 (652)
T COG2433 335 KISVSDDHERD 345 (652)
T ss_pred CCCCCCchHHH
Confidence 44555555553
No 159
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.17 E-value=33 Score=35.60 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
+++..+.|..++.++.++..++.++...+.....+..+|...+.....|+.
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333444444444444444444444444444444444444444444433
No 160
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=57.99 E-value=88 Score=32.92 Aligned_cols=47 Identities=11% Similarity=0.293 Sum_probs=28.8
Q ss_pred HHHHHHHHhhHHhcCc--chhhhhhHHHHHHHH--HHhhhhhhhHHHHHHh
Q 010595 386 VKEMMAVLKDVESAQI--DVDWLRNILNEISEA--IEFSTQHQTIDAAKAN 432 (506)
Q Consensus 386 L~ea~~~L~dLe~aGf--KVDWL~kKLeEV~Ea--re~~~~~~~leeeKd~ 432 (506)
+...+....+|++.-| +|.=|+.+|++|... -+|++....|++..+.
T Consensus 25 ~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~ke 75 (291)
T KOG4466|consen 25 MSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKE 75 (291)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 3344444445555444 466677888888754 3777777777777653
No 161
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.80 E-value=2.1e+02 Score=28.63 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHH----HHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhh
Q 010595 361 YYLECLCSVVQELQSTSLMQMTKAKV----KEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS 420 (506)
Q Consensus 361 ~YMn~LlsLIetL~ksplqeLS~~dL----~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~ 420 (506)
.|=.+|..+|++.++. ..++...+ .+-..++.||.++---+.+|..|.+-+.+..+-+
T Consensus 48 e~Ek~i~~~i~e~~~~--~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~ 109 (207)
T PF05010_consen 48 EYEKTIAQMIEEKQKQ--KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY 109 (207)
T ss_pred HHHHHHHHHHHHHHhh--HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4666777777776655 35555544 4445677788888888899999998877766443
No 162
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=57.64 E-value=2.2e+02 Score=36.77 Aligned_cols=158 Identities=19% Similarity=0.253 Sum_probs=101.7
Q ss_pred eEEeccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch-hhhccHHHHHHHHHHHhhHHhc
Q 010595 321 SVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS-LMQMTKAKVKEMMAVLKDVESA 399 (506)
Q Consensus 321 tVdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksp-lqeLS~~dL~ea~~~L~dLe~a 399 (506)
.|++++|.+++....-...+-+.|++.-+++- +..+-|--=++.+-+.|.... -..+...+|..+.+.|.-+.+-
T Consensus 20 ~V~~d~~~~l~~k~~~~~~lk~e~~k~~v~~e----q~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~ 95 (1822)
T KOG4674|consen 20 LVDVDVFKKLPKKSKDFESLKDEDGKTEVNHE----QQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSE 95 (1822)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 37899999999888888888888887766553 333444455666667666544 2356678899999999999999
Q ss_pred CcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------
Q 010595 400 QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL------- 472 (506)
Q Consensus 400 GfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL------- 472 (506)
.-++-|.-.+++-+.+...-. -..+..+|......++.++.||+....+....-++++.....+.++..|+
T Consensus 96 ~~~l~~~~~~~~~~~~~l~~~--~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~ 173 (1822)
T KOG4674|consen 96 RSNLSWEIDALKLENSQLRRA--KSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSED 173 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877777655443211 13333556666667777777777665555555555544444444444444
Q ss_pred HHHHHhhhhHHH
Q 010595 473 SDLELESNRLEQ 484 (506)
Q Consensus 473 ~~LE~ess~L~k 484 (506)
+.++.+..+|.|
T Consensus 174 vs~q~k~~rl~Q 185 (1822)
T KOG4674|consen 174 VSSQLKEERLEQ 185 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 163
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=57.37 E-value=65 Score=28.25 Aligned_cols=61 Identities=11% Similarity=0.325 Sum_probs=33.0
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHH
Q 010595 346 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 410 (506)
Q Consensus 346 DIAsnf~lKn~~lRs~YMn~LlsLIetL--~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKL 410 (506)
++|.-+.+.-..+| +|-+ .+||.-. ..+--+-.+.++|..+ ..+..|++.||.|.=++.-|
T Consensus 5 eva~~~gvs~~tLR-yYe~--~GLl~p~~r~~~gyR~Y~~~~i~~l-~~I~~lr~~G~sl~eI~~~l 67 (123)
T cd04770 5 ELAKAAGVSPDTIR-YYER--IGLLPPPQRSENGYRLYGEADLARL-RFIRRAQALGFSLAEIRELL 67 (123)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCCCCCCCCccCCHHHHHHH-HHHHHHHHCCCCHHHHHHHH
Confidence 44444555555554 3433 2333211 1223467788888776 55566899999865444333
No 164
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=57.33 E-value=1.1e+02 Score=32.98 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 010595 464 SVAKTKARLSDLE 476 (506)
Q Consensus 464 Rv~e~k~RL~~LE 476 (506)
++.+..+.|.+++
T Consensus 84 ~~~~~~~~~~~~~ 96 (418)
T TIGR00414 84 ELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 165
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=57.32 E-value=56 Score=36.64 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=9.6
Q ss_pred hhhhhHHHHHHHHHHhhhhh
Q 010595 404 DWLRNILNEISEAIEFSTQH 423 (506)
Q Consensus 404 DWL~kKLeEV~Eare~~~~~ 423 (506)
..+..++.++.++.++++++
T Consensus 46 ~~~~~~~~~~~~~l~~L~~~ 65 (646)
T PRK05771 46 RKLRSLLTKLSEALDKLRSY 65 (646)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555444433
No 166
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=57.30 E-value=1.3e+02 Score=36.18 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=13.5
Q ss_pred hHHhcCcchhhhhhHHHHHHHHH
Q 010595 395 DVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 395 dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
+|.++..|+.=|-.||+|+-..+
T Consensus 338 ~LlEarrk~egfddk~~eLEKkr 360 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEKKR 360 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHHHH
Confidence 45566666666666666554333
No 167
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.92 E-value=1.3e+02 Score=25.89 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 465 VAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 465 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
..++.++...+..+...++..+..+..++..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 168
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.67 E-value=1.9e+02 Score=35.25 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 460 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
|+++.|.-.+++..+|+-....--+++-|...-+.||
T Consensus 494 DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~Kf 530 (1243)
T KOG0971|consen 494 DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKF 530 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455555555555555544433333333333333333
No 169
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=56.53 E-value=1.7e+02 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010595 463 ESVAKTKARLSDLELESNRLEQIIQATQSK 492 (506)
Q Consensus 463 eRv~e~k~RL~~LE~ess~L~k~v~~~kSK 492 (506)
+++.+...+...++-....|+......--|
T Consensus 101 ekl~e~d~~ae~~eRkv~~le~~~~~~E~k 130 (143)
T PF12718_consen 101 EKLREADVKAEHFERKVKALEQERDQWEEK 130 (143)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444444444433333333
No 170
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=56.53 E-value=38 Score=29.41 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHh
Q 010595 454 KEKEVAGLKESVAKTKARLSDLELE 478 (506)
Q Consensus 454 KeKEv~d~~eRv~e~k~RL~~LE~e 478 (506)
..+++...+++|.++.+||..|+..
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566666655533
No 171
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=56.49 E-value=1.1e+02 Score=34.07 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 443 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 443 ELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
++++..+.|.+.+++..++.+.+..++..-.++.....++...|..+|.+|++-
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444455555555555555555555555555566666666666666666653
No 172
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.25 E-value=1.2e+02 Score=35.65 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=73.1
Q ss_pred HHHHHHHhhHHhcCcchhhhhhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHh
Q 010595 387 KEMMAVLKDVESAQIDVDWLRNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALK-----EKEVAG 460 (506)
Q Consensus 387 ~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear-e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qK-----eKEv~d 460 (506)
.-|..++.--+.|--.+.=|+..|+.+...+ -+=++..-++.+...|.+.++.++.|-|..+.+...+ ++.-.+
T Consensus 10 kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~ 89 (769)
T PF05911_consen 10 KVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSE 89 (769)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566778888888888999999999987655 3334577788888888888888877776666554332 333335
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 461 LKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
+..++.+...+|..+..+.+.|...|
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l 115 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKAL 115 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 67788888888888888877776644
No 173
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.18 E-value=53 Score=37.82 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHHHHH
Q 010595 355 SNSMRAYYLECLCSVVQ 371 (506)
Q Consensus 355 n~~lRs~YMn~LlsLIe 371 (506)
|..+|..+|-+++-+|-
T Consensus 24 S~~~r~~w~~~~l~iil 40 (907)
T KOG2264|consen 24 SAFLRFIWFVFILYIIL 40 (907)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 56678888876665553
No 174
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=56.06 E-value=39 Score=32.27 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
++..++.++.+..+.+.+...-+..|.++..-|.-.+.-+..|+.+.
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444443
No 175
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=55.99 E-value=1.4e+02 Score=33.24 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=5.3
Q ss_pred HHHHhhhhhhhc
Q 010595 485 IIQATQSKVTKF 496 (506)
Q Consensus 485 ~v~~~kSKV~kF 496 (506)
.|..++-+++.|
T Consensus 141 ll~Pl~e~l~~f 152 (475)
T PRK10361 141 LLSPLREQLDGF 152 (475)
T ss_pred HHhhHHHHHHHH
Confidence 344444444444
No 176
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=55.80 E-value=2.8e+02 Score=29.42 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=7.4
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 010595 459 AGLKESVAKTKARLSDLE 476 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~LE 476 (506)
.++...+..|..-|..++
T Consensus 346 ~~l~~~l~~~~~~L~~ve 363 (388)
T PF04912_consen 346 SDLQSQLKKWEELLNKVE 363 (388)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 177
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=55.72 E-value=2.6e+02 Score=29.05 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=33.1
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHH
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK--ELESQMNELALKEK 456 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kk--ELEe~leeL~qKeK 456 (506)
.+....+..+..+.+...+. ..+.+|.++++.-++.+.+...++- +....|+ .|+.+...+.++..
T Consensus 120 ~~~adk~~~k~~~~~~~arq---------~~ik~i~d~id~~~sqq~~~~~~~~---lfd~~keni~l~lE~~yre~~~~ 187 (247)
T KOG3976|consen 120 ADWADKLIEKILSQLEEARQ---------AHIKAISDAIDTEKSQQALASKTEY---LFDVSKENIALQLEATYREQLVR 187 (247)
T ss_pred HHHhHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHhHHHHHHHHh---hhhhhhHHHHHHHHHHHHHHHHH
Confidence 44444444444454444443 2344555555544444444333321 1111111 23444445555555
Q ss_pred HHHhHHHHHH
Q 010595 457 EVAGLKESVA 466 (506)
Q Consensus 457 Ev~d~~eRv~ 466 (506)
..++++.|+.
T Consensus 188 v~~E~K~~lD 197 (247)
T KOG3976|consen 188 VAKEVKRRLD 197 (247)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 178
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=55.71 E-value=1.6e+02 Score=30.57 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHH
Q 010595 384 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 384 ~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
.||..+-..-++|++.|-.|-=|=.|=.++.+.|
T Consensus 117 ~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R 150 (267)
T PF10234_consen 117 QDLKAARQLASEITQRGASLYDLLGKEVELREER 150 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHH
Confidence 4556666666667777666544333333555554
No 179
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.60 E-value=70 Score=26.81 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 443 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 443 ELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
.|+..++.|-+...+... .=...++++..+..++..|-.....+++||+..
T Consensus 4 ~Le~kle~Li~~~~~L~~---EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKS---ENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444 334567778888888888888888888888754
No 180
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=55.57 E-value=84 Score=24.32 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=30.0
Q ss_pred HHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010595 390 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVA 459 (506)
Q Consensus 390 ~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~ 459 (506)
...+..++.+||-|+ ||.+...+.+. . ..........+....+++++++++|.+.+..+.
T Consensus 4 L~~I~~~r~lGfsL~-------eI~~~l~l~~~-~--~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 4 LQFIRRLRELGFSLE-------EIRELLELYDQ-G--DPPCADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHTT--HH-------HHHHHHHHCCS-H--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-------HHHHHHhccCC-C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888764 45444433222 1 111122334555556666666666665554443
No 181
>PRK14162 heat shock protein GrpE; Provisional
Probab=55.52 E-value=26 Score=34.55 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 458 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
+..++.++.++++++-++..+..++.+++.-=+....+|...+|+.+||
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 96 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVL 96 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555666666766666666666666666666666666665554
No 182
>PRK10869 recombination and repair protein; Provisional
Probab=54.97 E-value=1.5e+02 Score=33.00 Aligned_cols=12 Identities=0% Similarity=0.171 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 010595 295 RNFSFSGIDLAS 306 (506)
Q Consensus 295 ~sFsl~~i~~~~ 306 (506)
..|-+.+|..+.
T Consensus 190 l~fql~Ei~~~~ 201 (553)
T PRK10869 190 LQYQLKELNEFA 201 (553)
T ss_pred HHHHHHHHHhCC
Confidence 445555555554
No 183
>PRK14151 heat shock protein GrpE; Provisional
Probab=54.90 E-value=22 Score=34.36 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 010595 468 TKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE 504 (506)
Q Consensus 468 ~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~ 504 (506)
+++++-++..+..++.++..-=+....+|...+|+.+
T Consensus 39 l~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~ 75 (176)
T PRK14151 39 AKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGD 75 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333
No 184
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.70 E-value=1.3e+02 Score=34.67 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=6.8
Q ss_pred HHHHHHHhhcccc
Q 010595 335 SILQSIISRYGDI 347 (506)
Q Consensus 335 ~iV~~IFeKHpDI 347 (506)
+.+.+|=.+-|++
T Consensus 359 ~kl~~vEr~~~~~ 371 (652)
T COG2433 359 PKLEKVERKLPEL 371 (652)
T ss_pred HHHHHHHHhcccc
Confidence 4455555555555
No 185
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=54.67 E-value=1e+02 Score=34.91 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=52.2
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 418 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 418 e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
++.+...+-+++++..+..+...+.+|-+-.++++-.+=.+++++..|...-.|=.++|.+...++..+..++-=+
T Consensus 32 rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 32 RLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444556666677766677777777777777777777777777777777555555777877778777776665433
No 186
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=54.57 E-value=33 Score=31.88 Aligned_cols=9 Identities=67% Similarity=0.881 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 010595 409 ILNEISEAI 417 (506)
Q Consensus 409 KLeEV~Ear 417 (506)
.+.||.+.+
T Consensus 4 ~~kEi~~l~ 12 (121)
T PF03310_consen 4 IIKEISELI 12 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555444
No 187
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=54.52 E-value=1.7e+02 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH
Q 010595 361 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 411 (506)
Q Consensus 361 ~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe 411 (506)
.||..++.++......+...++++.-......+.+|.. |.+.|++.++-
T Consensus 20 ~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~--~e~~~~k~q~~ 68 (139)
T PF05615_consen 20 RLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQ--FEFSILKSQLI 68 (139)
T ss_pred HHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 35566666666555444333344444445555555553 45566666554
No 188
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.51 E-value=2.5e+02 Score=31.46 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhh
Q 010595 469 KARLSDLELESNRLEQIIQATQSK 492 (506)
Q Consensus 469 k~RL~~LE~ess~L~k~v~~~kSK 492 (506)
.++|..|+.-..+|.+.+..+-.+
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~ 121 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANR 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555455555555444433
No 189
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.51 E-value=88 Score=33.60 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=11.0
Q ss_pred CcchhhhhhHHHHHHHHH
Q 010595 400 QIDVDWLRNILNEISEAI 417 (506)
Q Consensus 400 GfKVDWL~kKLeEV~Ear 417 (506)
|+....|+.+|.++.+..
T Consensus 326 g~~~~~l~~~~~~l~~~~ 343 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEEL 343 (451)
T ss_pred ecCcHHHHHHHHHHHHHH
Confidence 666566666666555544
No 190
>PRK14156 heat shock protein GrpE; Provisional
Probab=54.46 E-value=51 Score=32.07 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=32.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 458 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
+..+++++.++++++.++..+..++.+++.-=+....+|....|+-+||
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LL 84 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAIL 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666777777777777777777766666777776666665554
No 191
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=54.15 E-value=4.3e+02 Score=32.90 Aligned_cols=6 Identities=17% Similarity=0.058 Sum_probs=2.7
Q ss_pred Eeecch
Q 010595 328 HVRASI 333 (506)
Q Consensus 328 qVlpSq 333 (506)
+|..++
T Consensus 157 ~~~~~~ 162 (1353)
T TIGR02680 157 EVFDTA 162 (1353)
T ss_pred eEEecH
Confidence 344443
No 192
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=54.15 E-value=49 Score=26.73 Aligned_cols=51 Identities=31% Similarity=0.475 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--H-----HHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010595 440 TKKELESQMNELALKEKEVAG--L-----KESVAKTKARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d--~-----~eRv~e~k~RL~~LE~ess~L~k~v~~~k 490 (506)
+.++++....++...++.+.. + .+-|...+++|.+++.+...|...|..|+
T Consensus 9 L~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 9 LEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444443 1 24567789999999999999888887764
No 193
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=54.12 E-value=2.5e+02 Score=28.52 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH
Q 010595 355 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 418 (506)
Q Consensus 355 n~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare 418 (506)
-......|.++|+..|++|++.- ++..-. +..++. ..+.+||..|=+-+..+..
T Consensus 104 l~~q~~~y~~vL~~cl~~L~~li-~~~rl~-------~q~~~d--~~~~~~L~~kceam~lKLr 157 (238)
T PF14735_consen 104 LERQFATYYQVLLQCLQLLQKLI-EKHRLG-------TQAELD--KIKAEYLEAKCEAMILKLR 157 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhc-------chHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999997744 222111 112221 3567898888777765553
No 194
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=53.99 E-value=1.5e+02 Score=27.51 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=33.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 454 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 454 KeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
+.+.+.++.+|++-+.-|+..|+..-.++.+.|..+++++.+-.
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445557778888888888888888888888888888876543
No 195
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.69 E-value=1.6e+02 Score=25.92 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=30.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
...+.++..|+..+..++..|+.....|.+.+..++++++..
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777888888888888888888887777776653
No 196
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.64 E-value=82 Score=38.35 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
....+.+++.-+.+|-.+.++|.+-|..+.|++++|.
T Consensus 854 ~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~ 890 (1141)
T KOG0018|consen 854 KEDEINEVKKILRRLVKELTKLDKEITSIESKIERKE 890 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 4566778888999999999999999999999999884
No 197
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.21 E-value=2e+02 Score=33.63 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=13.6
Q ss_pred eccEEeecchHHHHHHHHhhcccc
Q 010595 324 VGKYHVRASISSILQSIISRYGDI 347 (506)
Q Consensus 324 VnGFqVlpSqv~iV~~IFeKHpDI 347 (506)
-+.+-+..++-.-+..++..++.+
T Consensus 439 ~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 439 RGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred CCCEEEEECChHHHHHHHhcCCCe
Confidence 344556666666666666555543
No 198
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=53.18 E-value=1.5e+02 Score=34.63 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
+-.+...++++.+.|..-+-.--++||.+.--|-+.|..+|+
T Consensus 77 ~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 77 ERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555556666666666666655554
No 199
>PRK14163 heat shock protein GrpE; Provisional
Probab=53.07 E-value=27 Score=35.03 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
++.+++.+|-++..+..++.+++.-=+..+.+|....|+-+||
T Consensus 55 e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 97 (214)
T PRK14163 55 ALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELL 97 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555555555544443
No 200
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=52.98 E-value=1e+02 Score=30.25 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=31.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 010595 431 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 483 (506)
Q Consensus 431 d~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~ 483 (506)
..+...++..+.+|+.++++|..+...+.++..+...++.+-..|+.+..+..
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777666666666666655555556666555555555443
No 201
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=52.62 E-value=2e+02 Score=32.74 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=9.7
Q ss_pred cccccccCCCCCCCCc
Q 010595 194 KKKVESENGKSFSRPE 209 (506)
Q Consensus 194 ~k~~~~~~~~~~~~~~ 209 (506)
.++-+-++.-+|++..
T Consensus 36 ~~DWIGiFKVGw~s~r 51 (546)
T PF07888_consen 36 SKDWIGIFKVGWSSTR 51 (546)
T ss_pred CCCeeEEeecCCCchh
Confidence 5555566666666655
No 202
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=52.53 E-value=3.6e+02 Score=34.02 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhHH
Q 010595 383 KAKVKEMMAVLKDVE 397 (506)
Q Consensus 383 ~~dL~ea~~~L~dLe 397 (506)
+.-+..|-..|.+|+
T Consensus 1611 E~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1611 EKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555554
No 203
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=52.27 E-value=73 Score=34.63 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=48.2
Q ss_pred cchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhh
Q 010595 354 ESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 354 Kn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~k 408 (506)
|.-.=+.+|-+.+...++.|-.....++|++.|.+|...+..+.+++.|+.=|..
T Consensus 133 kde~s~~y~~~~~~~~~e~lEe~~g~~iT~e~L~da~~r~N~~rea~~k~~kL~~ 187 (379)
T COG1775 133 KDEPSVKYWHNELDKFKELLEELTGNEITEEKLRDAIARYNRLREALAKLYKLAK 187 (379)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333388999999999999999998999999999999999999999888877765
No 204
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=52.11 E-value=2.4e+02 Score=27.58 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
|....+....+|.+||.++... +|+.+-.|
T Consensus 187 ~~~~~~~~~~~~Q~lEe~Ri~~------lk~~l~~~ 216 (236)
T cd07651 187 WNREWKAALDDFQDLEEERIQF------LKSNCWTF 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 6677777788888888776554 55555544
No 205
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=51.92 E-value=2.4e+02 Score=27.62 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHh-HHHHHHHHHHHHHHHHHhhhhH
Q 010595 433 CVNLLESTKKELESQMNE-LALKEKEVAG-LKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 433 ~e~~~e~~kkELEe~lee-L~qKeKEv~d-~~eRv~e~k~RL~~LE~ess~L 482 (506)
.++.....+.+.+...++ +.+..+.... ...+|.+|.+|+.+|..+...|
T Consensus 53 Le~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 53 LEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444454444444 2233233333 4557778888888887776665
No 206
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=51.82 E-value=2.6e+02 Score=27.92 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHh-----cCcchhhhhhHHHHHHH
Q 010595 355 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES-----AQIDVDWLRNILNEISE 415 (506)
Q Consensus 355 n~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~-----aGfKVDWL~kKLeEV~E 415 (506)
...+-..+++.+..+++.+...+-..+...-.......+.+|.. ..+. .|+.+.|.++..
T Consensus 181 ~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~~i~~L~~d~~~~~~i~-~~~~~~l~~~~~ 245 (367)
T PF04286_consen 181 LDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLRELIERLLTDPELREKIE-ELKDKLLSELIL 245 (367)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhhhhhHH
Confidence 45555667777777777777444344554444444445555544 2222 555555555543
No 207
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.80 E-value=1.3e+02 Score=27.02 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhHHh
Q 010595 384 AKVKEMMAVLKDVES 398 (506)
Q Consensus 384 ~dL~ea~~~L~dLe~ 398 (506)
.++..+..+|..|..
T Consensus 37 ~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 37 NELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHhhcc
Confidence 455555566666653
No 208
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.77 E-value=61 Score=30.13 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHh
Q 010595 467 KTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 467 e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
++...+.+|+.+...|...|..+
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333
No 209
>PLN02939 transferase, transferring glycosyl groups
Probab=51.60 E-value=2.3e+02 Score=34.48 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=61.6
Q ss_pred hccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH------------hhhhhhhHHHHHHhhHHHHHHHHHHHH--
Q 010595 380 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE------------FSTQHQTIDAAKANCVNLLESTKKELE-- 445 (506)
Q Consensus 380 eLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare------------~~~~~~~leeeKd~~e~~~e~~kkELE-- 445 (506)
++=+-.|++....++.-...++.++-|+..|+.+....- +......++++--.....++.+|.+|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 173 NILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555666666666666777777777666665542210 112223333332223333444444432
Q ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHH-HHHhhhhhhhcc
Q 010595 446 -SQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI-IQATQSKVTKFS 497 (506)
Q Consensus 446 -e~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~-v~~~kSKV~kF~ 497 (506)
+.-+-+...+||-.-+.+-+.++..||...+...++|+-. +..++-||+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (977)
T PLN02939 253 AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQ 306 (977)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHH
Confidence 2223445555555555566667777777766666665322 345667776653
No 210
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=51.50 E-value=56 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=8.6
Q ss_pred HhcCcchhhhhhHHHHHHHHH
Q 010595 397 ESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 397 e~aGfKVDWL~kKLeEV~Ear 417 (506)
.++--.++-|+.||.....+.
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i 44 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAI 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433333
No 211
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=51.45 E-value=65 Score=30.64 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhcch
Q 010595 360 AYYLECLCSVVQELQSTS 377 (506)
Q Consensus 360 s~YMn~LlsLIetL~ksp 377 (506)
..+|-..+.|+..|...|
T Consensus 82 ~sll~nfleLl~~l~~~P 99 (162)
T PF05983_consen 82 KSLLLNFLELLDILSKNP 99 (162)
T ss_dssp HHHHHHHHHHTTSS---C
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 344444555666666666
No 212
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=51.37 E-value=5.3e+02 Score=31.56 Aligned_cols=36 Identities=6% Similarity=0.191 Sum_probs=23.0
Q ss_pred hhHHhcCcch---hhhhhHHHHHHHHHHhhhhhhhHHHH
Q 010595 394 KDVESAQIDV---DWLRNILNEISEAIEFSTQHQTIDAA 429 (506)
Q Consensus 394 ~dLe~aGfKV---DWL~kKLeEV~Eare~~~~~~~leee 429 (506)
.+|.+.|++- .=|++++.++....+.+.++.....+
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~e 799 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIE 799 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677888865 45566777666666666665555444
No 213
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=51.21 E-value=2.4e+02 Score=27.44 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=42.2
Q ss_pred hhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010595 394 KDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKA-------NCVNLLESTKKELESQMNELALKEKEVAGLKESVA 466 (506)
Q Consensus 394 ~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd-------~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~ 466 (506)
+|.=.-|+.+||-+.=++=| + +..|+-+.+ -+-..+..++.||++...|=+.++|.++|.
T Consensus 37 SdfY~~gvEfdw~~eFveyV----~----cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd~----- 103 (158)
T PF03112_consen 37 SDFYSSGVEFDWKDEFVEYV----D----CVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKDL----- 103 (158)
T ss_pred hHHHHhhhhhhHHHHHHHHH----H----HHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHHH-----
Confidence 35667789999976544322 1 222222222 223445556777777777777777777773
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 010595 467 KTKARLSDLELESNRLEQ 484 (506)
Q Consensus 467 e~k~RL~~LE~ess~L~k 484 (506)
++-++.++.++..=+.+
T Consensus 104 -LK~ki~~I~~~~~Li~~ 120 (158)
T PF03112_consen 104 -LKIKIDEIMNKYPLINH 120 (158)
T ss_pred -HHHHHHHHHhhccHHHH
Confidence 34444445555444433
No 214
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.20 E-value=3e+02 Score=28.49 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010595 432 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 476 (506)
Q Consensus 432 ~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE 476 (506)
.++..+...++|||-+...+..+..|+.+.++-|..-++-|....
T Consensus 90 ~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~ 134 (246)
T KOG4657|consen 90 GIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAK 134 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 345556666777887777777777777776666665555443333
No 215
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=50.98 E-value=2.5e+02 Score=36.47 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
++.+...+++.++.+.++..+|.++.+-|.....-++++++...++..-|+
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566667777777777776666655555555555555555544443
No 216
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.81 E-value=1.5e+02 Score=24.88 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH
Q 010595 464 SVAKTKARLSDLELESNRLEQI 485 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~ 485 (506)
.+.+.+.++..++.+...|...
T Consensus 48 ~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 48 QIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555665555555555443
No 217
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=50.76 E-value=84 Score=28.05 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=19.9
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchhhhh
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVDWLR 407 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVDWL~ 407 (506)
-+-.+.++|..+.-+ ..|.++||-|+=++
T Consensus 36 ~R~Y~~~~l~~l~~I-~~lr~~G~sL~eI~ 64 (126)
T cd04785 36 YRLYGAAHVERLRFI-RRARDLGFSLEEIR 64 (126)
T ss_pred ccccCHHHHHHHHHH-HHHHHCCCCHHHHH
Confidence 366788888766554 45899999865433
No 218
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=50.74 E-value=2.1e+02 Score=28.97 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=33.1
Q ss_pred chhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHH
Q 010595 376 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEI 413 (506)
Q Consensus 376 splqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV 413 (506)
.||+.+-+.+|.++...-+-|+..-+.+|-.++++...
T Consensus 110 ~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka 147 (244)
T cd07595 110 SPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAA 147 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 35678888999999999999999999999999999754
No 219
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=50.47 E-value=15 Score=38.36 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=33.1
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 420 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 420 ~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
+|-.-++++.+++.++.-..+-+|-+|.+++-.|++||-+|
T Consensus 31 YDNDPeMK~Vme~F~rqTsQRF~EYdErm~~kRqkcKEqcD 71 (299)
T PF02009_consen 31 YDNDPEMKSVMENFDRQTSQRFEEYDERMQEKRQKCKEQCD 71 (299)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 45556667777888888888888889999999999999988
No 220
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.37 E-value=1.8e+02 Score=30.27 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 010595 442 KELESQMNELALKEKEVAGLKESVA 466 (506)
Q Consensus 442 kELEe~leeL~qKeKEv~d~~eRv~ 466 (506)
+++.+.-.++.+.++++++++++|.
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443
No 221
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.15 E-value=1.9e+02 Score=32.56 Aligned_cols=10 Identities=50% Similarity=0.630 Sum_probs=5.5
Q ss_pred cCCCCCCCCc
Q 010595 200 ENGKSFSRPE 209 (506)
Q Consensus 200 ~~~~~~~~~~ 209 (506)
-|++.|++.+
T Consensus 135 fNGk~Fn~le 144 (493)
T KOG0804|consen 135 FNGKQFNSLE 144 (493)
T ss_pred cCCCcCCCCC
Confidence 4556666554
No 222
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.11 E-value=2.9e+02 Score=30.61 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHh
Q 010595 455 EKEVAGLKESVAKTKARLSDLELE 478 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~e 478 (506)
.+...|+.+-++.+.-||+.||+-
T Consensus 345 yERaRdIqEalEscqtrisKlEl~ 368 (455)
T KOG3850|consen 345 YERARDIQEALESCQTRISKLELQ 368 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677777777653
No 223
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.94 E-value=99 Score=29.62 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 409 ILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 409 KLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
+-+++....+.+.+|+....+...++..+..+...+...+..|...++++..
T Consensus 10 ~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 10 ADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666655555555555555555555555555555555444
No 224
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.90 E-value=2.1e+02 Score=29.72 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=56.6
Q ss_pred hhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH----------------hhhhhhhHHHHHHhhHHHHHHH
Q 010595 377 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE----------------FSTQHQTIDAAKANCVNLLEST 440 (506)
Q Consensus 377 plqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare----------------~~~~~~~leeeKd~~e~~~e~~ 440 (506)
||..|.+.||.++.-..+-|...-.+.|-.++|+.....--. -..+...++++-+.....+|.-
T Consensus 111 PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~ 190 (257)
T cd07620 111 PLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQC 190 (257)
T ss_pred HHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 578999999999999999999888888888888864322100 0011123444445555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010595 441 KKELESQMNELALKEKEVAG 460 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d 460 (506)
+..++..|-.|..+|.+.+.
T Consensus 191 kd~~~a~Mynfl~kE~e~a~ 210 (257)
T cd07620 191 KDQYSADLYHFATKEDSYAN 210 (257)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777777666
No 225
>PRK12705 hypothetical protein; Provisional
Probab=49.77 E-value=2.3e+02 Score=31.87 Aligned_cols=6 Identities=17% Similarity=0.086 Sum_probs=2.4
Q ss_pred hhhhhH
Q 010595 404 DWLRNI 409 (506)
Q Consensus 404 DWL~kK 409 (506)
-||.++
T Consensus 23 ~~~~~~ 28 (508)
T PRK12705 23 VLLKKR 28 (508)
T ss_pred HHHHHH
Confidence 344433
No 226
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.68 E-value=3.1e+02 Score=32.00 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=58.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhcch---hhhcc--HHHHHHHHHHHhhHHhcCc----chhhhhhHHHHHHHHHHhhhhhh
Q 010595 354 ESNSMRAYYLECLCSVVQELQSTS---LMQMT--KAKVKEMMAVLKDVESAQI----DVDWLRNILNEISEAIEFSTQHQ 424 (506)
Q Consensus 354 Kn~~lRs~YMn~LlsLIetL~ksp---lqeLS--~~dL~ea~~~L~dLe~aGf----KVDWL~kKLeEV~Eare~~~~~~ 424 (506)
.-..+...++++.-.+|+.....- +++|. +++|.+..+.|.+.-.-|. .-+=|+..|.-|.
T Consensus 40 ~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~---------- 109 (660)
T KOG4302|consen 40 KLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLK---------- 109 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHH----------
Confidence 345555666666666666554433 23332 3455555555555554444 1111222222221
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------H-HHHHHHHHHHHHHHHHh-hhhHHHH
Q 010595 425 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAG--------------L-KESVAKTKARLSDLELE-SNRLEQI 485 (506)
Q Consensus 425 ~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d--------------~-~eRv~e~k~RL~~LE~e-ss~L~k~ 485 (506)
..-+..+....+++.|+.+++..+.+.+.++.. + -+++.+++++|.+|+.+ +.+|++.
T Consensus 110 ---~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv 183 (660)
T KOG4302|consen 110 ---PYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKV 183 (660)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333333444444454445444444433 1 27888999999999955 4455443
No 227
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=49.56 E-value=2.7e+02 Score=31.74 Aligned_cols=62 Identities=29% Similarity=0.459 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHH----------hhHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010595 411 NEISEAIEFSTQHQTIDAAKA----------NCVNLLESTKKE----LESQMNELALKEKEVAGLKESVAKTKARL 472 (506)
Q Consensus 411 eEV~Eare~~~~~~~leeeKd----------~~e~~~e~~kkE----LEe~leeL~qKeKEv~d~~eRv~e~k~RL 472 (506)
+.|.||+++...-+++++++. +....|+.++++ |+.+-.+...+|.|++-+++++-+++..|
T Consensus 285 e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 285 EKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345677777777777777754 222233333332 55555566677777777766666665544
No 228
>PRK14144 heat shock protein GrpE; Provisional
Probab=49.34 E-value=35 Score=33.84 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=37.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
++++.++++++.++++++.++..+..++.+++.-=+....+|...+|+.+||
T Consensus 51 ~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 102 (199)
T PRK14144 51 EEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALL 102 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566667788888888888888887777777777777777776665
No 229
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.29 E-value=4.2e+02 Score=29.66 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhh--hhhHHHHHHHHH
Q 010595 362 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNEISEAI 417 (506)
Q Consensus 362 YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDW--L~kKLeEV~Ear 417 (506)
+|+-|=.|+.+|.. -=.+.|.+.......|+..||.+.= +...|.++.+..
T Consensus 209 ~~e~IP~l~~~l~~-----~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l 261 (560)
T PF06160_consen 209 IMEDIPKLYKELQK-----EFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQL 261 (560)
T ss_pred HHHHhHHHHHHHHH-----HhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Confidence 44444445555442 2246778888888899999998886 455555555443
No 230
>PRK14157 heat shock protein GrpE; Provisional
Probab=49.25 E-value=28 Score=35.26 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010595 468 TKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 468 ~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 505 (506)
++++|-++..+..+..+++.-=+..+.+|-...|+.+|
T Consensus 96 ~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dL 133 (227)
T PRK14157 96 YLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTAL 133 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 231
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=49.13 E-value=4.4e+02 Score=29.85 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=65.5
Q ss_pred ecchHHHHHHHHhhcccccccC---ccc-c-----hhHHHHHHHHHHHHHHHHhcch-----hhhccHHHHHHHHHHHhh
Q 010595 330 RASISSILQSIISRYGDIAANC---NLE-S-----NSMRAYYLECLCSVVQELQSTS-----LMQMTKAKVKEMMAVLKD 395 (506)
Q Consensus 330 lpSqv~iV~~IFeKHpDIAsnf---~lK-n-----~~lRs~YMn~LlsLIetL~ksp-----lqeLS~~dL~ea~~~L~d 395 (506)
+.-|..+|++|++-.-||...= .+. + ...+.--|+-|-..||+|+++- |.++=.+|+.-|...|.
T Consensus 439 ldaqG~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~- 517 (583)
T KOG3809|consen 439 LDAQGALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELE- 517 (583)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHH-
Confidence 3346789999999877764321 111 1 1222335888899999999875 12222333333322221
Q ss_pred HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHH
Q 010595 396 VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKE-------LESQMNELALKEKEVAGLKESVAKT 468 (506)
Q Consensus 396 Le~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkE-------LEe~leeL~qKeKEv~d~~eRv~e~ 468 (506)
-| ....++.-+++.+| .|-....|++.+++++|.++.|-+.
T Consensus 518 --------mW------------------------rse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~ 565 (583)
T KOG3809|consen 518 --------MW------------------------RSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKA 565 (583)
T ss_pred --------HH------------------------HHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 11111111111111 2334567889999999999999999
Q ss_pred HHHHHHHHHhh
Q 010595 469 KARLSDLELES 479 (506)
Q Consensus 469 k~RL~~LE~es 479 (506)
++|+-+-|...
T Consensus 566 r~~IL~Ne~rI 576 (583)
T KOG3809|consen 566 RGRILNNEKRI 576 (583)
T ss_pred HHHHhhhHHHH
Confidence 98886655443
No 232
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=49.00 E-value=2.8e+02 Score=27.57 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=8.5
Q ss_pred hhccHHHHHHHHHHHhhHH
Q 010595 379 MQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe 397 (506)
+..-+.++.+|...|..+.
T Consensus 148 ~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 148 RQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 233
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=48.70 E-value=2.1e+02 Score=35.77 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=61.1
Q ss_pred HHHHHHHHhhHHhcCcchhhhhhHHHH----HHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 010595 386 VKEMMAVLKDVESAQIDVDWLRNILNE----ISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQ---MNELALKEKEV 458 (506)
Q Consensus 386 L~ea~~~L~dLe~aGfKVDWL~kKLeE----V~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~---leeL~qKeKEv 458 (506)
+..+...+.|++..+-+.+=|...|.- +.--.++.+.......+.+..+..++...++...+ +-.|...-.+.
T Consensus 787 ~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~ 866 (1294)
T KOG0962|consen 787 VTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNEL 866 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666555555555544432 22222222222333333333444555544443333 23344444555
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 459 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
++...++..--+++.+|+..-.+|..-+..+.|||...
T Consensus 867 k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~ 904 (1294)
T KOG0962|consen 867 KEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKEL 904 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 56666777777888888888888888888888888654
No 234
>PLN02320 seryl-tRNA synthetase
Probab=48.55 E-value=1.1e+02 Score=34.17 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=4.3
Q ss_pred hhhhhhHHHHH
Q 010595 403 VDWLRNILNEI 413 (506)
Q Consensus 403 VDWL~kKLeEV 413 (506)
+.|++.-.+.|
T Consensus 69 ~k~ir~n~~~v 79 (502)
T PLN02320 69 FKWIRDNKEAV 79 (502)
T ss_pred HHHHHhCHHHH
Confidence 33344333333
No 235
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=48.38 E-value=2.6e+02 Score=26.93 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=11.5
Q ss_pred hhhhhhHHHHHHHHH-HhhhhhhhHH
Q 010595 403 VDWLRNILNEISEAI-EFSTQHQTID 427 (506)
Q Consensus 403 VDWL~kKLeEV~Ear-e~~~~~~~le 427 (506)
++.|++-|++|.... +.++....++
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554322 3344444433
No 236
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=48.31 E-value=2.5e+02 Score=28.45 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=25.4
Q ss_pred hhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH
Q 010595 377 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 411 (506)
Q Consensus 377 plqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe 411 (506)
||+.+=+.||.++....+.|+..-+.+|--++|+.
T Consensus 123 PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~ 157 (229)
T cd07616 123 PLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777777777777777777777774
No 237
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=48.02 E-value=4.2e+02 Score=30.42 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=8.1
Q ss_pred chhHHHHHHHHHhh
Q 010595 20 HECGMACLEKIAQG 33 (506)
Q Consensus 20 HeC~~~C~~ki~~~ 33 (506)
-++...|+..|-.+
T Consensus 35 v~~~~~cL~~I~p~ 48 (594)
T PF05667_consen 35 VEAVVRCLRVIDPS 48 (594)
T ss_pred HHHHHHHHHHhCcc
Confidence 35556666666543
No 238
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=47.92 E-value=3.9e+02 Score=29.20 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=15.2
Q ss_pred HHHHHhcchhhhccHHHHHHHHHHHhhHHhcC
Q 010595 369 VVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ 400 (506)
Q Consensus 369 LIetL~ksplqeLS~~dL~ea~~~L~dLe~aG 400 (506)
|+-.+=-.|+..+=+..=..+...|.+.+.+.
T Consensus 17 lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~ 48 (445)
T PRK13428 17 LVWRFVVPPVRRLMAARQDTVRQQLAESATAA 48 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445444444455555555555543
No 239
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=47.72 E-value=96 Score=27.71 Aligned_cols=30 Identities=3% Similarity=0.193 Sum_probs=21.6
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchhhhhh
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVDWL~k 408 (506)
-+..+.+||. ....+..|+++||-|.=++.
T Consensus 36 ~R~Y~~~~~~-~l~~I~~lr~~G~sL~eI~~ 65 (127)
T cd01108 36 YRVYNQRDIE-ELRFIRRARDLGFSLEEIRE 65 (127)
T ss_pred ceecCHHHHH-HHHHHHHHHHcCCCHHHHHH
Confidence 4678888888 45566788899998754443
No 240
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=47.39 E-value=3e+02 Score=27.30 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=43.5
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE- 457 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKE- 457 (506)
+...+..+..+...|.-.... +++=|...|+.+..... .-+..+.+++..+...++....+|..++.+|...-..
T Consensus 65 q~~~e~~i~~~~~~v~~~~~~--~~~~~~~~l~~L~~ri~--~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~E 140 (247)
T PF06705_consen 65 QSKFEEQINNMQERVENQISE--KQEQLQSRLDSLNDRIE--ALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENE 140 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544433322 22333333333332221 1223344555555666666666666666665543322
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 010595 458 VAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ 477 (506)
.....+|...+..||.++..
T Consensus 141 r~~R~erE~~i~krl~e~~~ 160 (247)
T PF06705_consen 141 RNEREEREENILKRLEEEEN 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22233455555555555443
No 241
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.29 E-value=92 Score=35.59 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=10.3
Q ss_pred hhhhhhHHHHHHHHH
Q 010595 403 VDWLRNILNEISEAI 417 (506)
Q Consensus 403 VDWL~kKLeEV~Ear 417 (506)
++||.++|.++...-
T Consensus 269 ~~fL~~qL~~l~~~L 283 (726)
T PRK09841 269 LEFLQRQLPEVRSEL 283 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 478888887776444
No 242
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.20 E-value=3.3e+02 Score=33.51 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~k 490 (506)
+...+....|..++..+++.+|..+..+|.+-.++.+++...+..++
T Consensus 469 ~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elk 515 (1195)
T KOG4643|consen 469 LDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELK 515 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566677777777777888888888887777777765554443
No 243
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.19 E-value=64 Score=35.98 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSK 492 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSK 492 (506)
+..+...+|.+||.+...|...+..++++
T Consensus 98 q~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 98 QRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 44456666666666666666555444443
No 244
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.94 E-value=1.9e+02 Score=34.66 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHH
Q 010595 382 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEIS 414 (506)
Q Consensus 382 S~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~ 414 (506)
-.-++..+.++=.+|++. =+|.|=+.|..|+.
T Consensus 391 rkkeie~rEaar~ElEkq-RqlewErar~qem~ 422 (1118)
T KOG1029|consen 391 RKKEIERREAAREELEKQ-RQLEWERARRQEML 422 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344566666666666653 46788887777765
No 245
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=46.58 E-value=3.7e+02 Score=28.68 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
...+-+.+.+||.+|+-+..=|.|-+.++..|++.
T Consensus 212 ~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 212 YIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677999999999999999999999999863
No 246
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=46.39 E-value=2.6e+02 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=25.9
Q ss_pred eEEeccEEeecchHHHHH--HHHhhcccccccCcccchhH
Q 010595 321 SVSVGKYHVRASISSILQ--SIISRYGDIAANCNLESNSM 358 (506)
Q Consensus 321 tVdVnGFqVlpSqv~iV~--~IFeKHpDIAsnf~lKn~~l 358 (506)
-|.|.|-.+. ..++.|. -|.-.+|++-.+|...+...
T Consensus 263 ev~~e~~e~p-~~~s~wspagis~~~~a~~e~c~~~d~eq 301 (527)
T PF15066_consen 263 EVTVEGVESP-EIASTWSPAGISWSSGASQEDCKTPDTEQ 301 (527)
T ss_pred hcchhcccCc-ccccCCCCCcccccccchhhhccCCCHHh
Confidence 3777775544 6666676 67778888888888776543
No 247
>PRK14141 heat shock protein GrpE; Provisional
Probab=46.34 E-value=33 Score=34.17 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhhhccccchhh
Q 010595 470 ARLSDLELESNRLEQIIQATQSKVTKFSQKSLAD 503 (506)
Q Consensus 470 ~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D 503 (506)
.++.++..+...+.+++.-=+....+|....|+.
T Consensus 52 d~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~ 85 (209)
T PRK14141 52 DRMLRLAAEMENLRKRTQRDVADARAYGIAGFAR 85 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333443333333
No 248
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=46.06 E-value=1e+02 Score=28.31 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
.-.++..||.++...-..|..++..+-+||+-
T Consensus 66 ~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ei 97 (141)
T PF13874_consen 66 HDLETSARLEEARRRHQELSHRLLRVLRKQEI 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555553
No 249
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.02 E-value=3.7e+02 Score=30.97 Aligned_cols=95 Identities=14% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH-hhhhhhhHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 010595 384 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQTIDAAKANCVNLLEST---KKELESQMNELALKEKEVA 459 (506)
Q Consensus 384 ~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare-~~~~~~~leeeKd~~e~~~e~~---kkELEe~leeL~qKeKEv~ 459 (506)
+|+....+.+..|++..= =+.++|+.+.+..+ .-.+-+.+.++-+.+...++.. -.+++.|..|..+...++.
T Consensus 273 ~D~nK~~~y~~~~~~k~~---~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~ 349 (581)
T KOG0995|consen 273 DDVNKFQAYVSQMKSKKQ---HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN 349 (581)
T ss_pred hHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665432 22344554443331 1112222222222222222221 2335555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 010595 460 GLKESVAKTKARLSDLELESNR 481 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~ess~ 481 (506)
++...+..+...+-+++++..+
T Consensus 350 ~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 350 KIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555555555555554444
No 250
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=45.96 E-value=2.9e+02 Score=28.77 Aligned_cols=141 Identities=15% Similarity=0.188 Sum_probs=74.2
Q ss_pred EEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhh
Q 010595 327 YHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWL 406 (506)
Q Consensus 327 FqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL 406 (506)
|.-..-|+..|-+.+-+.|. .++..|=++. -++..|+-. +.+|..+.+...+|+ +-||-|
T Consensus 94 F~~q~~qvNaWDr~LI~nge----------kI~~Ly~e~~--~vk~~qkrL-----dq~L~~I~sqQ~ELE---~~L~~l 153 (254)
T KOG2196|consen 94 FLQQATQVNAWDRTLIENGE----------KISGLYNEVV--KVKLDQKRL-----DQELEFILSQQQELE---DLLDPL 153 (254)
T ss_pred HHHHHHHHhHHHHHHHhCcH----------HHHHHHHHHH--HHHhHHHHH-----HHHHHHHHHHHHHHH---HHHHHH
Confidence 44455666777777766654 3344443332 223333322 566788888888888 678888
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhHHHHHHHHHHHHH
Q 010595 407 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE-------------VAGLKESVAKTKARLS 473 (506)
Q Consensus 407 ~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKE-------------v~d~~eRv~e~k~RL~ 473 (506)
+++|+...=-+ + -+.+++++...-..++.....|..+=++|.+.-++ +..+..-+..+...|.
T Consensus 154 E~k~~~~~g~~-~---~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLq 229 (254)
T KOG2196|consen 154 ETKLELQSGHT-Y---LSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQ 229 (254)
T ss_pred HHHHhccccch-h---hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHH
Confidence 88888722111 0 11222222222222222222222222222222222 2222234457788888
Q ss_pred HHHHhhhhHHHHHHHhhh
Q 010595 474 DLELESNRLEQIIQATQS 491 (506)
Q Consensus 474 ~LE~ess~L~k~v~~~kS 491 (506)
-|+.-++.|++.+..++-
T Consensus 230 wl~d~st~~e~k~d~i~K 247 (254)
T KOG2196|consen 230 WLDDNSTQLEKKLDKIKK 247 (254)
T ss_pred HHHhhhHHHHHHHHHHHh
Confidence 899999999888887764
No 251
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.78 E-value=2.8e+02 Score=31.99 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 434 VNLLESTKKELESQMNELALKEKEVAGLKESV-AKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 434 e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv-~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
+=.+|..+.|+-.|--.|++.-+...| .|+ +++.+++..||-+.+....-..-+.+=|++
T Consensus 386 eIalEqkkEec~kme~qLkkAh~~~dd--ar~~pe~~d~i~~le~e~~~y~de~~kaqaevdr 446 (654)
T KOG4809|consen 386 EIALEQKKEECSKMEAQLKKAHNIEDD--ARMNPEFADQIKQLEKEASYYRDECGKAQAEVDR 446 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHh--hhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333 233 367778888887777766655545444443
No 252
>PLN02678 seryl-tRNA synthetase
Probab=45.77 E-value=1.9e+02 Score=31.93 Aligned_cols=86 Identities=8% Similarity=0.042 Sum_probs=36.3
Q ss_pred HhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010595 393 LKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 472 (506)
Q Consensus 393 L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL 472 (506)
..-|..-|+.++++..-|.-=.+.|++..+...+..++..+-+.|..++.. . ++.....++++.+++++.++...|
T Consensus 19 ~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~-~---~~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 19 RESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA-K---EDATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-C---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555433333333344454444455444444333333221110 0 111122223344444555555555
Q ss_pred HHHHHhhhhH
Q 010595 473 SDLELESNRL 482 (506)
Q Consensus 473 ~~LE~ess~L 482 (506)
.+++.+...+
T Consensus 95 ~~~~~~l~~~ 104 (448)
T PLN02678 95 QEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 253
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=45.71 E-value=5e+02 Score=29.44 Aligned_cols=100 Identities=22% Similarity=0.235 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHh
Q 010595 355 SNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKAN 432 (506)
Q Consensus 355 n~~lRs~YMn~LlsLIetL~--ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~ 432 (506)
+-.++-+.|-+|+=|---+| -.....-++..+.+|...|..|..|---|.=|.++|+...+.- ..+..+|-+
T Consensus 211 ~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~------rnvavek~~ 284 (575)
T KOG4403|consen 211 HNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQ------RNVAVEKLD 284 (575)
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hchhhhhhh
Confidence 33445555544433322233 2222456788899999999999888888888888888766552 233344444
Q ss_pred hHHHHHH---------------HHHHHHHHHHHHHHHHHHHHh
Q 010595 433 CVNLLES---------------TKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 433 ~e~~~e~---------------~kkELEe~leeL~qKeKEv~d 460 (506)
+++.+.+ .++|||.....|...|+|..+
T Consensus 285 lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 285 LERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444442 244555555555555555544
No 254
>PRK14146 heat shock protein GrpE; Provisional
Probab=45.55 E-value=38 Score=33.81 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=37.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 456 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 456 KEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
.++.++++++.++++++-++..+..++.++..-=+....+|....|+-+||
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lL 111 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFL 111 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555667777788888888888888888777777777777777776665
No 255
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=45.55 E-value=2.8e+02 Score=28.06 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=9.0
Q ss_pred cccccCcccchhHH
Q 010595 346 DIAANCNLESNSMR 359 (506)
Q Consensus 346 DIAsnf~lKn~~lR 359 (506)
|++++.+...|.--
T Consensus 124 D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 124 DFVADLRAPTPTAA 137 (319)
T ss_pred HHHHHhhCCCHHHH
Confidence 56677777776533
No 256
>PRK14145 heat shock protein GrpE; Provisional
Probab=45.51 E-value=45 Score=33.00 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 458 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
+.++++++.+++.++-++..+..+..+++.-=+....+|...+|+-+||
T Consensus 54 l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LL 102 (196)
T PRK14145 54 LQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELL 102 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666777777777777777777766777777776666665554
No 257
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.38 E-value=2.7e+02 Score=26.35 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=7.1
Q ss_pred ccHHHHHHHHHHHhhHH
Q 010595 381 MTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 381 LS~~dL~ea~~~L~dLe 397 (506)
+|...=.-+..+|.++-
T Consensus 16 ft~~QAe~i~~~l~~~l 32 (177)
T PF07798_consen 16 FTEEQAEAIMKALREVL 32 (177)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 258
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=45.37 E-value=3.7e+02 Score=27.80 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010595 404 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL 461 (506)
Q Consensus 404 DWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~ 461 (506)
+-|-.|=+|+.+..++.-.++. ++..|..+..++|..=+++.|.++..+++
T Consensus 50 ~Ll~~kd~ef~~llkla~eq~k-------~e~~m~~Lea~VEkrD~~IQqLqk~LK~a 100 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLLKLAPEQQK-------REQLMRTLEAHVEKRDEVIQQLQKNLKSA 100 (272)
T ss_pred HHHHhccHHHHHHHHHhHhHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455566666666655443333 35555555555555555555555555553
No 259
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.32 E-value=2e+02 Score=33.59 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=15.2
Q ss_pred EeccEEeecchHHHHHHHHhhcccc
Q 010595 323 SVGKYHVRASISSILQSIISRYGDI 347 (506)
Q Consensus 323 dVnGFqVlpSqv~iV~~IFeKHpDI 347 (506)
.-+.+-|..+.-.-+..+...++.|
T Consensus 433 ~~g~~viitTH~~eL~~~~~~~~~v 457 (771)
T TIGR01069 433 KQNAQVLITTHYKELKALMYNNEGV 457 (771)
T ss_pred hcCCEEEEECChHHHHHHhcCCCCe
Confidence 3455666666666666666556555
No 260
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=45.20 E-value=46 Score=35.78 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=24.6
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 421 TQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 421 ~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
|-.-++++..++-++.--.+=+|.+|.|++-+|++||-+|
T Consensus 55 DNDPeMK~Vm~nF~rqTsQRF~EYdERM~~kRqKcKeqCD 94 (353)
T TIGR01477 55 DNDPEMKSVMEQFDRQTSQRFEEYDERMQEKRQKCKEQCD 94 (353)
T ss_pred CCcHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhhHHhhc
Confidence 3334444445555555555566777777777777777776
No 261
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=45.20 E-value=16 Score=40.69 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=33.8
Q ss_pred CCcc-cccccccceEEeccEEeecchHHHHHHHHhhcccccccCccc
Q 010595 309 SDDE-EAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLE 354 (506)
Q Consensus 309 ~d~E-E~~SvvsEtVdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lK 354 (506)
+||. .+....+|.+.++||||-|..+ ..++-.||+|.--|-+-
T Consensus 420 ~DG~l~IvdR~KdlIk~~G~qv~P~Ei---E~vL~~hP~V~eaaVvg 463 (537)
T KOG1176|consen 420 EDGYLYIVDRSKDLIKYGGEQVSPAEI---EAVLLTHPDVLEAAVVG 463 (537)
T ss_pred CCCeEEEecchhhheeeCCEEeCHHHH---HHHHHhCCCccEEEEEc
Confidence 3443 7888889999999999999985 56799999997655443
No 262
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.95 E-value=1.7e+02 Score=25.88 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010595 433 CVNLLESTKKELESQ--MNELALKEKEVAGLKESVAKTKARLSDL 475 (506)
Q Consensus 433 ~e~~~e~~kkELEe~--leeL~qKeKEv~d~~eRv~e~k~RL~~L 475 (506)
.++++....++|+.+ -.++...+-++.+.+-++.++.++|..+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555545444444 3455555555555444555555555444
No 263
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.71 E-value=1.3e+02 Score=27.16 Aligned_cols=11 Identities=0% Similarity=0.148 Sum_probs=4.1
Q ss_pred hhhhhhhHHHH
Q 010595 419 FSTQHQTIDAA 429 (506)
Q Consensus 419 ~~~~~~~leee 429 (506)
++++...+++.
T Consensus 6 l~~~l~~le~~ 16 (107)
T PF06156_consen 6 LFDRLDQLEQQ 16 (107)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 264
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.56 E-value=3.5e+02 Score=27.29 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcch----hhhhhHHHHHHHHHHhhh
Q 010595 358 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDV----DWLRNILNEISEAIEFST 421 (506)
Q Consensus 358 lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKV----DWL~kKLeEV~Eare~~~ 421 (506)
++++++-.+=.+|+.+-.+- .+-+--+.+|...|..++..=-++ -=|+.+|++...-.+.+.
T Consensus 7 ~~~~~~a~~~~~~dk~EDp~--~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 7 LKDLVKANINELLDKAEDPE--KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666664443 666666777777776666432222 234555555554444333
No 265
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=44.43 E-value=1.7e+02 Score=33.92 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhh
Q 010595 383 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQ 422 (506)
Q Consensus 383 ~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~ 422 (506)
.++--+...++.-.+...+=+.||..-++-+...+++-++
T Consensus 175 ~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~ 214 (775)
T TIGR00763 175 KDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKK 214 (775)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555667777777666655555333
No 266
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=44.35 E-value=1.2e+02 Score=27.21 Aligned_cols=29 Identities=7% Similarity=0.113 Sum_probs=20.3
Q ss_pred chhhhccHHHHHHHHHHHhhHHhcCcchhh
Q 010595 376 TSLMQMTKAKVKEMMAVLKDVESAQIDVDW 405 (506)
Q Consensus 376 splqeLS~~dL~ea~~~L~dLe~aGfKVDW 405 (506)
+.-+-.+.++|..+.-+. .|+++||-|.=
T Consensus 34 ~gyR~Y~~~~l~~l~~I~-~lr~lG~sL~e 62 (127)
T TIGR02047 34 NNYRVYTVGHVERLAFIR-NCRTLDMSLAE 62 (127)
T ss_pred CCCCcCCHHHHHHHHHHH-HHHHcCCCHHH
Confidence 334678888887765544 57899998653
No 267
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=44.21 E-value=1.8e+02 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
+++.+..++.+++.....+.+.+..++.+++
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 268
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=44.14 E-value=1.6e+02 Score=30.10 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=13.7
Q ss_pred HHHHhhhhhhhccccchhhhc
Q 010595 485 IIQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 485 ~v~~~kSKV~kF~~kSl~D~l 505 (506)
.+..++..+++..-.+.+||.
T Consensus 198 ~l~~a~~~l~~~~I~AP~dG~ 218 (346)
T PRK10476 198 ALAIAELHLEDTTVRAPFDGR 218 (346)
T ss_pred HHHHHHHHhhcCEEECCCCcE
Confidence 344456666777777777775
No 269
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=44.01 E-value=1.4e+02 Score=25.66 Aligned_cols=27 Identities=0% Similarity=0.009 Sum_probs=21.3
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWL 406 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL 406 (506)
+..++.++ +....+..|+++||-|+=+
T Consensus 35 r~Y~~~~~-~~l~~I~~lr~~G~sL~eI 61 (107)
T cd04777 35 YFFDEKCQ-DDLEFILELKGLGFSLIEI 61 (107)
T ss_pred cccCHHHH-HHHHHHHHHHHCCCCHHHH
Confidence 56788888 6778889999999986533
No 270
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.96 E-value=97 Score=25.43 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 010595 465 VAKTKARLSDLEL 477 (506)
Q Consensus 465 v~e~k~RL~~LE~ 477 (506)
+..+..+|.+++.
T Consensus 36 i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 36 IKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 271
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=43.94 E-value=3.6e+02 Score=28.97 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcc---hhhhhhHHHHHHHHHHhhhhhhhHHHHHH
Q 010595 362 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQID---VDWLRNILNEISEAIEFSTQHQTIDAAKA 431 (506)
Q Consensus 362 YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfK---VDWL~kKLeEV~Eare~~~~~~~leeeKd 431 (506)
||+.|-.+|...+... +--.+.|.+.... -++.+.++ |.=|..+++.+.+..+-+..--+++++..
T Consensus 84 ~~~~l~~~v~d~~rri--~~~kerL~e~~ee--~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~ 152 (319)
T KOG0796|consen 84 ALEILERFVADVDRRI--EKAKERLAETVEE--RSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQK 152 (319)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 8999999999988773 2233444444222 22333444 66777777777776666665555555533
No 272
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=43.90 E-value=2.1e+02 Score=25.49 Aligned_cols=58 Identities=12% Similarity=0.270 Sum_probs=33.0
Q ss_pred cccccCcccchhHHHHHHHHHHHHHH-HH-hcchhhhccHHHHHHHHHHHhhHHhcCcchhhhh
Q 010595 346 DIAANCNLESNSMRAYYLECLCSVVQ-EL-QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 407 (506)
Q Consensus 346 DIAsnf~lKn~~lRs~YMn~LlsLIe-tL-~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~ 407 (506)
++|..+.+.-..+| +|-. .+||. .- ..+.-+-.+.++|..+. .+..|+..||.++=++
T Consensus 4 e~a~~~gvs~~tlR-~Ye~--~GLl~~~~r~~~g~R~Y~~~~l~~l~-~I~~l~~~G~sl~eI~ 63 (124)
T TIGR02051 4 ELAKAAGVNVETIR-YYER--KGLLPEPDRPEGGYRRYPEETVKRLR-FIKRAQELGFSLEEIG 63 (124)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCCEeECHHHHHHHH-HHHHHHHCCCCHHHHH
Confidence 44555555555553 3422 23332 11 12334678888888774 6777999999875333
No 273
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=43.72 E-value=1.5e+02 Score=32.96 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 440 TKKELESQMNELALKE-------------KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 440 ~kkELEe~leeL~qKe-------------KEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
-+.+-|++|.+|+||- ++-.+.+.|.+=-.+|+.+++-+. +|+..--+-+||+.+-.+
T Consensus 312 ek~~kE~kL~elAQkAR~~r~g~~~~~~~ked~e~~~R~eiR~~Rrke~~~~~-nlsra~~dKrsKl~r~r~ 382 (506)
T KOG2441|consen 312 EKEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRDRRKEREKDR-NLSRAAPDKRSKLQRDRG 382 (506)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHhh-hhhhhccchhhhhhhccC
Confidence 3556677778888763 233334444444578899888777 666655666777765443
No 274
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=43.63 E-value=4.3e+02 Score=28.07 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
+..+|-+-++++-.+...+..-|..++.++
T Consensus 208 eade~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 208 EADELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 275
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=43.55 E-value=1.3e+02 Score=27.42 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=22.8
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010595 417 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLK 462 (506)
Q Consensus 417 re~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~ 462 (506)
++++++...+++.....-..+..+|+.|.+.++|=...+-|-.-+|
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444455555555555555444444444433
No 276
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=43.53 E-value=1.7e+02 Score=33.93 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHH
Q 010595 362 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 362 YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
.=|+|+.=-|.|...++-+|=+.||..-...|..=. +-|+--|+.+..++
T Consensus 303 VeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~------~vLrgElea~kqak 352 (832)
T KOG2077|consen 303 VENLILENSQLLETKNALNIVKNDLIAKVDELTCEK------DVLRGELEAVKQAK 352 (832)
T ss_pred HHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHH------HHHhhHHHHHHHHH
Confidence 335555555555544444555555544444443332 44454444443333
No 277
>PRK14127 cell division protein GpsB; Provisional
Probab=43.17 E-value=1.4e+02 Score=27.17 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHh
Q 010595 467 KTKARLSDLELE 478 (506)
Q Consensus 467 e~k~RL~~LE~e 478 (506)
++-.||++||..
T Consensus 89 DiLKRls~LEk~ 100 (109)
T PRK14127 89 DILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHH
Confidence 456677776654
No 278
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=43.08 E-value=2.3e+02 Score=24.73 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=37.4
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010595 423 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 488 (506)
Q Consensus 423 ~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~ 488 (506)
|..+...-.++...++. |+.+.++|....+++.++..+|.++..=..+|...+.+|+..|..
T Consensus 37 Y~~~~~~~~~l~~~~~~----l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 37 YKKMKDIAAGLEKNLED----LNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444444 444455666666666666667777777777777777777766653
No 279
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=42.89 E-value=69 Score=26.47 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcccccccCc-c----------cchhHHH---HHHHHHHHHHHHH
Q 010595 334 SSILQSIISRYGDIAANCN-L----------ESNSMRA---YYLECLCSVVQEL 373 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~-l----------Kn~~lRs---~YMn~LlsLIetL 373 (506)
..+..++|++||++-.-|. + .|..++. .+|++|-.+|..|
T Consensus 21 ~~~f~~lF~~~P~~~~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l 74 (110)
T PF00042_consen 21 SEFFQRLFEEYPDYKKLFPKFKDIVPLEELKNNPEFKAHAQRVMEALDEAVDNL 74 (110)
T ss_dssp HHHHHHHHHHSGGGGGGGTTGTTTSSHHHHTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCHHHHhhcccccccchHHHHhccchHHHHHHHHHHHHHHHHHcc
Confidence 4678899999999999988 4 3455654 5667777777766
No 280
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=42.88 E-value=2.2e+02 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.6
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchh
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVD 404 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVD 404 (506)
-+-.+.+||..+.-+ ..|..+||-+.
T Consensus 36 ~R~Y~~~~l~~l~~I-~~lr~~G~~l~ 61 (107)
T cd01111 36 YGLFDDCALQRLRFV-RAAFEAGIGLD 61 (107)
T ss_pred CeecCHHHHHHHHHH-HHHHHcCCCHH
Confidence 467888888876655 67999999744
No 281
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=42.85 E-value=8.1 Score=42.37 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred ecchHHHHHHHHhhcccccccCcccc--------------hhHHHHHHHHHHHHHHHHhcch-----hhhccHHHHHHHH
Q 010595 330 RASISSILQSIISRYGDIAANCNLES--------------NSMRAYYLECLCSVVQELQSTS-----LMQMTKAKVKEMM 390 (506)
Q Consensus 330 lpSqv~iV~~IFeKHpDIAsnf~lKn--------------~~lRs~YMn~LlsLIetL~ksp-----lqeLS~~dL~ea~ 390 (506)
..-+-.+|++|++---|+...-.... ..+...=|+-|...||+||++. |.++-.+||..|.
T Consensus 390 ~~~~G~Lv~~iletkk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~ 469 (539)
T PF10243_consen 390 EEEHGGLVQKILETKKELEKSANSEEKEEKEQSLAASKKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQ 469 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhcCHHHHHHHHHHHHHhhcccccccccccccchhhhccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 34567889999987666544333332 4455566899999999999876 4445555555555
Q ss_pred HHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010595 391 AVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKA 470 (506)
Q Consensus 391 ~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~ 470 (506)
..|. .|-. |.+++ -+.|..++.. .+.. |+-...+|++++.+|+|-+.+|..+++
T Consensus 470 ~El~---------~W~~-------e~~~~---~~~l~~e~~~----t~~~---~~pl~~~L~ele~~I~~~~~~i~~~ka 523 (539)
T PF10243_consen 470 KELE---------MWRS-------EYRQH---AEALQEEQSI----TDEA---LEPLKAQLAELEQQIKDQQDKICAVKA 523 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH---------HHHH-------HHHHH---HHHHHHHHhh----hhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 2322 11111 1111122111 1112 333334566667778887778888877
Q ss_pred HHHHHHHhhh
Q 010595 471 RLSDLELESN 480 (506)
Q Consensus 471 RL~~LE~ess 480 (506)
.+-+=+....
T Consensus 524 ~Il~Ne~~i~ 533 (539)
T PF10243_consen 524 NILKNEEKIQ 533 (539)
T ss_dssp ----------
T ss_pred HHHhhHHHHH
Confidence 7655444433
No 282
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=42.69 E-value=1.3e+02 Score=26.63 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=19.7
Q ss_pred hhhhccHHHHHHHHHHHhhHHhcCcchhh
Q 010595 377 SLMQMTKAKVKEMMAVLKDVESAQIDVDW 405 (506)
Q Consensus 377 plqeLS~~dL~ea~~~L~dLe~aGfKVDW 405 (506)
--+..+.+||..+.- +..|+++||-|.=
T Consensus 35 gyR~Y~~~~l~~l~~-I~~lr~~G~sL~e 62 (127)
T cd04784 35 NYRLYDEEHLERLLF-IRRCRSLDMSLDE 62 (127)
T ss_pred CCeecCHHHHHHHHH-HHHHHHcCCCHHH
Confidence 346778888876654 5668899998653
No 283
>PRK14150 heat shock protein GrpE; Provisional
Probab=42.45 E-value=55 Score=32.05 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 467 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 467 e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
+++.++-++..+..++.++..--+....+|...+|+.+||
T Consensus 56 ~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL 95 (193)
T PRK14150 56 EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELL 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666665554
No 284
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.37 E-value=5.7e+02 Score=31.36 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=26.1
Q ss_pred HHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHH
Q 010595 335 SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQE 372 (506)
Q Consensus 335 ~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIet 372 (506)
..+..+-++|.||.+.+.---+.+...+...+-.+-..
T Consensus 366 ~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~ 403 (1201)
T PF12128_consen 366 EQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQ 403 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446778999999988877777777776555444444
No 285
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=42.26 E-value=2.2e+02 Score=32.38 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=21.2
Q ss_pred hccHHHHHHHHHHHhhHHhcCcchhhh--hhHHH
Q 010595 380 QMTKAKVKEMMAVLKDVESAQIDVDWL--RNILN 411 (506)
Q Consensus 380 eLS~~dL~ea~~~L~dLe~aGfKVDWL--~kKLe 411 (506)
.-|+.+|..++.+|. .||+-||+ ++||.
T Consensus 187 s~~EkEvE~~F~~ls----L~f~~D~~TLe~R~~ 216 (538)
T PF05781_consen 187 SASEKEVEAEFLRLS----LGFKCDRFTLEKRLK 216 (538)
T ss_pred CCcHHHHHHHHHHHH----HHhhhhhhhHHHHHH
Confidence 338888888888884 68999994 56655
No 286
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=42.21 E-value=3.8e+02 Score=30.87 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhh
Q 010595 355 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS 420 (506)
Q Consensus 355 n~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~ 420 (506)
|..+|...|-+||. -.+|..+|..++|.++|.+|+..|..=-.--.-.|| +-++|......++
T Consensus 456 n~~~R~slmi~ll~-~d~~~~P~~~d~s~eel~~a~~llk~e~~~l~~dd~--q~~~ec~s~~~~l 518 (617)
T KOG0050|consen 456 NDAPRVSLMIVLLA-YDTLNYPPFKDFSQEELDNAYDLLKQEAEELVSDDY--QFLKECLSRMQYL 518 (617)
T ss_pred hhhhhhHHHHHHHH-hcccCCCCCCCCCHHHHHHHHHHHHHHHHhcChHHH--HHHHHHHHHHHHH
Confidence 46667666666654 578889999999999999999998765444444567 7777777666665
No 287
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.10 E-value=1.2e+02 Score=31.25 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=37.3
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHhhhhHHHH
Q 010595 418 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK----ARLSDLELESNRLEQI 485 (506)
Q Consensus 418 e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k----~RL~~LE~ess~L~k~ 485 (506)
.+...+++.+++.....+.+ .+.+++....+++.++..|+.+...++..-+ .-...||.+...|.+.
T Consensus 34 ~~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~ 104 (247)
T COG3879 34 MLAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRML 104 (247)
T ss_pred HHHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 34445566666555444555 5566666666666666666666666666555 3344444444444443
No 288
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.93 E-value=2.1e+02 Score=24.12 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHHHH
Q 010595 456 KEVAGLKESVAKTKARL 472 (506)
Q Consensus 456 KEv~d~~eRv~e~k~RL 472 (506)
.+-..|.+||..+-++|
T Consensus 53 ~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 53 QERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33334444555544444
No 289
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=41.91 E-value=1.7e+02 Score=26.32 Aligned_cols=26 Identities=0% Similarity=0.031 Sum_probs=18.9
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDW 405 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDW 405 (506)
+..+.+++..+ ..+..|++.||-|+=
T Consensus 37 R~Y~~~~~~~l-~~I~~lr~~G~sL~e 62 (133)
T cd04787 37 RLYSEKDLSRL-RFILSARQLGFSLKD 62 (133)
T ss_pred eeCCHHHHHHH-HHHHHHHHcCCCHHH
Confidence 46777777766 566778999998653
No 290
>PLN02372 violaxanthin de-epoxidase
Probab=41.88 E-value=2.8e+02 Score=31.00 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQA 488 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~ 488 (506)
.++.-.+-++-|.+|.|+.+++++.+..
T Consensus 423 ~~~lskee~~~l~~~~~~~~~vek~f~~ 450 (455)
T PLN02372 423 LKELSKEEKELLEKLKMEASEVEKLFGR 450 (455)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455566677888888888776643
No 291
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.88 E-value=83 Score=26.75 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 459 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
-++..-++++...|.+|+....+....|..++++|
T Consensus 48 pgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 48 PGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555666666666666666666666666655
No 292
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.83 E-value=3e+02 Score=25.80 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDL 475 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~L 475 (506)
|..+++.+..++..+...+.....+
T Consensus 100 l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 100 LKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 293
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=41.80 E-value=2.9e+02 Score=27.61 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH-hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010595 382 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQTIDAAKANCVNLLESTKKELESQMNELA 452 (506)
Q Consensus 382 S~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare-~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~ 452 (506)
|.+|+.....-|.-|+ +|||=|+..|+++-+... -..+.-+++..-...+..+.++..++..+|.=|.
T Consensus 70 Sr~DiarvA~lvinlE---~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 70 TKEDIANVASLVINLE---EKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888887777777 899999999998776664 1122233333333444555555555555544333
No 294
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.62 E-value=6.8e+02 Score=29.82 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 468 TKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 468 ~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
+..||..+|.+...|...|..|...+++
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444
No 295
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=41.19 E-value=6.1e+02 Score=29.15 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=5.7
Q ss_pred hhHHHhhhhcc
Q 010595 79 CGERCFKRNGE 89 (506)
Q Consensus 79 C~e~C~~~i~e 89 (506)
+...|+..|..
T Consensus 37 ~~~~cL~~I~p 47 (594)
T PF05667_consen 37 AVVRCLRVIDP 47 (594)
T ss_pred HHHHHHHHhCc
Confidence 34455555554
No 296
>KOG3427 consensus Polyglutamine tract-binding protein PQBP-1 [Transcription]
Probab=41.10 E-value=8.9 Score=38.46 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=33.6
Q ss_pred CCCCCCCCCCccCCCCccchhhhhhhccCcccccccccCCCCccccccCcCCCCCCCC
Q 010595 108 NEGRKVDPTCIKASNPYHECGEHCFKRNGEANARGVNKESGSWSFGRKNKASDSQPGT 165 (506)
Q Consensus 108 ~~~r~~~~~C~nasnpyH~C~~~C~~~~~~~~~~~~~~e~~~~~~~r~~~~~~~~~~~ 165 (506)
+++-...-.|||..|.||.|..||-+..+.+-- -..+-+|-.+.|..+-+|.+
T Consensus 73 ~es~~~~~~~~~k~n~~~r~~~~~~~k~~rg~~-----~~~~~R~~~reKr~~Rk~a~ 125 (222)
T KOG3427|consen 73 NESYHGYKLCPNKYNIYHRCSLYCVNKFNRGPL-----SQPSHRYLKREKRLLRKYAL 125 (222)
T ss_pred cccccccccCccccchhhhhhhhhccccccCCC-----cchhhhhHHHHHHhcccccc
Confidence 344455668999999999999999877665433 11133454444444444444
No 297
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=41.05 E-value=96 Score=28.82 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=23.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNRLEQI 485 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~ 485 (506)
++||.-+|++|.|+.+|+.+||.|.+=|...
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556788999999999999988777543
No 298
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=41.04 E-value=1.6e+02 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
+|.+..+++.+ ||.+|.+.|++. +++.+....+
T Consensus 116 ~l~~lk~q~q~---ri~q~~~qlge~-~esk~~~~Al 148 (168)
T KOG3192|consen 116 DLKQLKSQNQE---RIAQCKQQLGEA-FESKKYDEAL 148 (168)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHH-HhhccHHHHH
Confidence 34555555544 888888888775 3344443333
No 299
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=40.93 E-value=2.8e+02 Score=25.24 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
..++.++.++++...++...+.....+..++......|..+.++..++...+...+.
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444455555555555555555554444443
No 300
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=40.91 E-value=4e+02 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 434 VNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 434 e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
.-.++.+..+|++...-|.++.+.+..
T Consensus 342 qsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 342 QSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 301
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.83 E-value=5.1e+02 Score=30.58 Aligned_cols=10 Identities=20% Similarity=0.139 Sum_probs=3.9
Q ss_pred HHHHhhcccc
Q 010595 338 QSIISRYGDI 347 (506)
Q Consensus 338 ~~IFeKHpDI 347 (506)
.+++.++-||
T Consensus 356 ~~e~~k~~di 365 (698)
T KOG0978|consen 356 DRESQKERDI 365 (698)
T ss_pred HHHhhhhHhH
Confidence 3333343343
No 302
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=40.75 E-value=3.4e+02 Score=26.12 Aligned_cols=9 Identities=22% Similarity=0.025 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 010595 409 ILNEISEAI 417 (506)
Q Consensus 409 KLeEV~Ear 417 (506)
++..|.+.|
T Consensus 34 pI~~iLe~R 42 (155)
T PRK06569 34 KAEEIFNNR 42 (155)
T ss_pred HHHHHHHHH
Confidence 344444444
No 303
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=40.64 E-value=3.3e+02 Score=25.96 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhh-------hhhHHHHHHHHHHhhhhhhhHHHHHHhhHH
Q 010595 363 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-------LRNILNEISEAIEFSTQHQTIDAAKANCVN 435 (506)
Q Consensus 363 Mn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDW-------L~kKLeEV~Eare~~~~~~~leeeKd~~e~ 435 (506)
++.|++-|-.||+ ++..+.++|.+|...-.-|.. .||= |+..|..-.++..++..|++-++....+..
T Consensus 8 iE~LInrInelQQ--aKKk~~EELgEa~~l~eaL~~---ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~ 82 (134)
T PF15233_consen 8 IEDLINRINELQQ--AKKKSSEELGEAQALWEALQR---ELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQ 82 (134)
T ss_pred HHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5789999999999 589999999998876544432 2333 344444444555666767664433332111
Q ss_pred HH--HH-HHHHHHHHHHHHHHHHHHHHh
Q 010595 436 LL--ES-TKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 436 ~~--e~-~kkELEe~leeL~qKeKEv~d 460 (506)
.+ +- .+-+++.+|++|-.+-|..=+
T Consensus 83 ~~~~eck~R~~fe~qLE~lm~qHKdLwe 110 (134)
T PF15233_consen 83 TLLQECKLRLDFEEQLEDLMGQHKDLWE 110 (134)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00 144556666666655554433
No 304
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.59 E-value=3.6e+02 Score=28.72 Aligned_cols=87 Identities=21% Similarity=0.383 Sum_probs=46.0
Q ss_pred cchhhhhhHHHHHHHHH-HhhhhhhhHHHHHH-----------hhHHH-------HHHHHHHHHHHHHHHHHHHHHHHhH
Q 010595 401 IDVDWLRNILNEISEAI-EFSTQHQTIDAAKA-----------NCVNL-------LESTKKELESQMNELALKEKEVAGL 461 (506)
Q Consensus 401 fKVDWL~kKLeEV~Ear-e~~~~~~~leeeKd-----------~~e~~-------~e~~kkELEe~leeL~qKeKEv~d~ 461 (506)
|.++-|..||..+-+.- .+-...+.++.+.. .|-+. |..+-.+|....++..+-+++|.-+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999988775322 22223333332211 11111 1122344555555555566666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 462 KESVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
..+|.+...|+..+=.+...|.+.+.
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66666666666666666666655553
No 305
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.59 E-value=3.8e+02 Score=29.94 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHH
Q 010595 357 SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNL 436 (506)
Q Consensus 357 ~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~ 436 (506)
.||-..|...-..|+.+.... -|++.|++- |+++.++-+.+++.
T Consensus 124 ~fRe~k~~~~~~~~~q~esll---------------------------e~~~q~da~---------~qq~~~ele~~d~~ 167 (446)
T KOG4438|consen 124 LFREEKMDLYRPFIQQLESLL---------------------------ELRKQLDAK---------YQQALKELERFDED 167 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHH---------HHHHHHHHHhhccc
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHH------------HHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 437 LESTKKE---LESQMNELALKEKEVAGLKESVAKT------------KARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 437 ~e~~kkE---LEe~leeL~qKeKEv~d~~eRv~e~------------k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
.+.-.++ +|+..++|.+.+.+......++..- -.+|..|.++...|+++..+|++++
T Consensus 168 ~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqI 239 (446)
T KOG4438|consen 168 VEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQI 239 (446)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 306
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.55 E-value=1.7e+02 Score=30.97 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=11.3
Q ss_pred HHHHHHhhhhHHHHHHHhhh
Q 010595 472 LSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 472 L~~LE~ess~L~k~v~~~kS 491 (506)
|+++..|...|.|.|.-+|+
T Consensus 119 LKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555556666665555
No 307
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=40.18 E-value=1.4e+02 Score=27.28 Aligned_cols=28 Identities=11% Similarity=0.286 Sum_probs=19.9
Q ss_pred hhhhccHHHHHHHHHHHhhHHhcCcchhh
Q 010595 377 SLMQMTKAKVKEMMAVLKDVESAQIDVDW 405 (506)
Q Consensus 377 plqeLS~~dL~ea~~~L~dLe~aGfKVDW 405 (506)
.-+..|.++|..+. .+..|..+||.|+=
T Consensus 35 gyR~Y~~~~l~~l~-~I~~lr~~G~sl~e 62 (135)
T PRK10227 35 GYRTYTQQHLNELT-LLRQARQVGFNLEE 62 (135)
T ss_pred CcccCCHHHHHHHH-HHHHHHHCCCCHHH
Confidence 34677888887665 55668999998653
No 308
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=40.15 E-value=1.3e+02 Score=34.86 Aligned_cols=82 Identities=29% Similarity=0.211 Sum_probs=43.3
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 403 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 403 VDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
..-|+.+|.++.|..+-..++.-++...+++...++..-++......++..+|.++...-+++.-.+.++.+.|++-++|
T Consensus 580 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eae~~~~e~~~~~~~~~~~~~~~~~~~~e~k~~~l 659 (664)
T KOG4568|consen 580 AAALREKLKEASENKENEVQFQRAELTLENIRHQLELECQQTKDSEAELRLKELEKQKLVEEIEFLKEQDKQNENKLTDL 659 (664)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34566666666666655555555555555555544443222222222344444444444455556667777777766665
Q ss_pred HH
Q 010595 483 EQ 484 (506)
Q Consensus 483 ~k 484 (506)
+.
T Consensus 660 ~~ 661 (664)
T KOG4568|consen 660 ES 661 (664)
T ss_pred Hh
Confidence 43
No 309
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=40.14 E-value=1.8e+02 Score=25.83 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=19.5
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchh
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVD 404 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVD 404 (506)
-+..+.++|..+. .+..|++.||-|.
T Consensus 36 yR~Y~~~~l~~l~-~I~~lr~~G~sL~ 61 (126)
T cd04783 36 YRRYPEETVTRLR-FIKRAQELGFTLD 61 (126)
T ss_pred CeecCHHHHHHHH-HHHHHHHcCCCHH
Confidence 3667888887764 5667899999874
No 310
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.56 E-value=3.1e+02 Score=25.26 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHhcCcchhhhhhHH--------HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010595 386 VKEMMAVLKDVESAQIDVDWLRNIL--------NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 457 (506)
Q Consensus 386 L~ea~~~L~dLe~aGfKVDWL~kKL--------eEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKE 457 (506)
+..+.+.|+-++.----+-|==.+| +||.......+.......+...++..+..+....+..|+=|.+|.++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHhHHHHHHHHHH
Q 010595 458 VAGLKESVAKTKA 470 (506)
Q Consensus 458 v~d~~eRv~e~k~ 470 (506)
+.+++..|.++|+
T Consensus 98 veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 98 VEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHH
No 311
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=39.55 E-value=1.5e+02 Score=26.41 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=33.3
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhhHHhcCcchhhhh
Q 010595 345 GDIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 407 (506)
Q Consensus 345 pDIAsnf~lKn~~lRs~YMn~LlsLIetL--~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~ 407 (506)
+++|.-+.+....+| +|-. .+||--- ..+--+..|.++|..+. .+..+..+||-|+=++
T Consensus 4 ~e~a~~~gvs~~tlR-yYe~--~GLl~p~~r~~~gyR~Y~~~~l~~l~-~I~~lr~~G~sL~eI~ 64 (127)
T TIGR02044 4 GQVAKLTGLSSKMIR-YYEE--KGLIPPPLRSEGGYRTYTQQHLDELR-LISRARQVGFSLEECK 64 (127)
T ss_pred HHHHHHHCcCHHHHH-HHHH--CCCCCCCCcCCCCCeecCHHHHHHHH-HHHHHHHCCCCHHHHH
Confidence 344555555555555 3322 2333211 12334778888988876 5556899999865333
No 312
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=39.40 E-value=3e+02 Score=27.88 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH
Q 010595 385 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 418 (506)
Q Consensus 385 dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare 418 (506)
|+..+.+.|..|. .+.+|+..+++.-.+..+
T Consensus 117 e~~~~~~nlk~l~---~~ee~~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 117 DLRILDSNLKSLS---AKEEKLEQKEEKYEEELK 147 (205)
T ss_pred HHHHhHhHHHHHH---HHHHHHhhhHHHHHHHHH
Confidence 3444444444444 555666666665544443
No 313
>PRK10698 phage shock protein PspA; Provisional
Probab=39.33 E-value=3.4e+02 Score=26.91 Aligned_cols=92 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------hhhhHH
Q 010595 415 EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL-----------ESNRLE 483 (506)
Q Consensus 415 Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~-----------ess~L~ 483 (506)
.|++-+.........-..++..++.....++.....|.+.+..+.+++.|-..+..|...++. ......
T Consensus 86 LAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~ 165 (222)
T PRK10698 86 LARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAM 165 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHH
Q ss_pred HHHHHhhhhhhhccccchhhhcC
Q 010595 484 QIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 484 k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
..|.-+..||+..+...=+.+++
T Consensus 166 ~~f~rmE~ki~~~Ea~aea~~~~ 188 (222)
T PRK10698 166 ARFESFERRIDQMEAEAESHGFG 188 (222)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcc
No 314
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.23 E-value=1.1e+02 Score=26.90 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=36.9
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID-AAKANCVNLLESTKKELESQMNELALKEKE 457 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~le-eeKd~~e~~~e~~kkELEe~leeL~qKeKE 457 (506)
+-.+.+|+..+ ..+..|++.||.|.=++.-|.. +.+.+ ...+....+++...++|++++++|....+.
T Consensus 36 R~Y~~~d~~~l-~~I~~lr~~G~sl~eI~~~l~~----------~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 104 (116)
T cd04769 36 RVYDAQHVECL-RFIKEARQLGFTLAELKAIFAG----------HEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLAR 104 (116)
T ss_pred eeeCHHHHHHH-HHHHHHHHcCCCHHHHHHHHhc----------cccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777655 4566778899987544333321 11110 011122344555555566665555555555
Q ss_pred HHh
Q 010595 458 VAG 460 (506)
Q Consensus 458 v~d 460 (506)
+..
T Consensus 105 l~~ 107 (116)
T cd04769 105 LDA 107 (116)
T ss_pred HHH
Confidence 544
No 315
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=39.23 E-value=5.8e+02 Score=28.38 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=10.7
Q ss_pred hHHhcCcchhhhhhHHHHH
Q 010595 395 DVESAQIDVDWLRNILNEI 413 (506)
Q Consensus 395 dLe~aGfKVDWL~kKLeEV 413 (506)
.|+.+.=+|.+|+..|..+
T Consensus 219 ~leeae~~l~~L~~e~~~~ 237 (522)
T PF05701_consen 219 ELEEAEEELEELKEELEAA 237 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666666655333
No 316
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.16 E-value=7.6e+02 Score=32.53 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHH
Q 010595 385 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 418 (506)
Q Consensus 385 dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare 418 (506)
+...-.+.-.-+..+..+++=|+.+|+|-.+++.
T Consensus 1313 e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~ 1346 (1930)
T KOG0161|consen 1313 ETREKSALENALRQLEHELDLLREQLEEEQEAKN 1346 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444556666778888888888877763
No 317
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=39.01 E-value=2.3e+02 Score=27.58 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 010595 441 KKELESQMNELALKEKEVAGL 461 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~ 461 (506)
.+|+++-++-...+.++-+.+
T Consensus 111 EkEykealea~nEknkeK~~L 131 (159)
T PF04949_consen 111 EKEYKEALEAFNEKNKEKAQL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555553
No 318
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=38.84 E-value=5.8e+02 Score=28.21 Aligned_cols=10 Identities=0% Similarity=0.361 Sum_probs=3.9
Q ss_pred HHHHHHhcch
Q 010595 368 SVVQELQSTS 377 (506)
Q Consensus 368 sLIetL~ksp 377 (506)
++|..+....
T Consensus 234 ~l~~~~~~~~ 243 (582)
T PF09731_consen 234 DLIESINEGN 243 (582)
T ss_pred chhhhhcccc
Confidence 3333444333
No 319
>PRK14147 heat shock protein GrpE; Provisional
Probab=38.67 E-value=53 Score=31.61 Aligned_cols=28 Identities=7% Similarity=0.205 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010595 440 TKKELESQMNELALKEKEVAGLKESVAK 467 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~~eRv~e 467 (506)
+++++++....+.+...+....|.|...
T Consensus 30 l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 30 LRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333333444444444444443
No 320
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.53 E-value=1.3e+02 Score=33.69 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
|+++...+.+.|+++++++..+..|...+..++.+..+|+..+.-|+..|
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555555544555555555555555555555555555555
No 321
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=38.48 E-value=2.4e+02 Score=30.52 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=9.7
Q ss_pred CcchhhhhhHHHHHHHHH
Q 010595 400 QIDVDWLRNILNEISEAI 417 (506)
Q Consensus 400 GfKVDWL~kKLeEV~Ear 417 (506)
.++++=|+.+.++++..+
T Consensus 41 ~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 41 QTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555555444
No 322
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=38.37 E-value=3.7e+02 Score=28.66 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=44.9
Q ss_pred hcccccccCcccchhHHH---------HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHH
Q 010595 343 RYGDIAANCNLESNSMRA---------YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEI 413 (506)
Q Consensus 343 KHpDIAsnf~lKn~~lRs---------~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV 413 (506)
|-|+|-..|...+..+|- ..||+.++-|.||+..+ +.+-.-++.--++|-+..|--|.-|+|+
T Consensus 175 K~~elq~eft~nseTqr~l~kngetLl~alnfFIsSvnTl~nkT--------i~DTL~Ti~qyEsARiEyDayR~Dle~~ 246 (341)
T KOG3876|consen 175 KSPELQEEFTYNSETQRLLGKNGETLLGALNFFISSVNTLVNKT--------IEDTLMTIKQYESARIEYDAYRTDLEEL 246 (341)
T ss_pred cCHHHHHHhCcCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHhhhhhhhhhhhhhhHHHh
Confidence 444454555444444332 46788888899998776 3445567778889999999999999988
Q ss_pred H
Q 010595 414 S 414 (506)
Q Consensus 414 ~ 414 (506)
.
T Consensus 247 ~ 247 (341)
T KOG3876|consen 247 T 247 (341)
T ss_pred c
Confidence 3
No 323
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=38.25 E-value=3.7e+02 Score=25.87 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=6.8
Q ss_pred hhhhHHHHHHHHH
Q 010595 405 WLRNILNEISEAI 417 (506)
Q Consensus 405 WL~kKLeEV~Ear 417 (506)
-.+.+|-||+...
T Consensus 59 ~aR~rL~eVS~~f 71 (159)
T PF05384_consen 59 QARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHhhh
Confidence 3455666665444
No 324
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.90 E-value=3.1e+02 Score=24.83 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=8.6
Q ss_pred hhhccHHHHHHHHHHH
Q 010595 378 LMQMTKAKVKEMMAVL 393 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L 393 (506)
|+.||.++|.+....=
T Consensus 1 L~~lS~~eL~~Ll~d~ 16 (150)
T PF07200_consen 1 LQDLSTEELQELLSDE 16 (150)
T ss_dssp GGS-TTHHHHHHHHH-
T ss_pred CCcCCHHHHHHHHcCH
Confidence 3566777776665543
No 325
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=37.86 E-value=4.6e+02 Score=35.23 Aligned_cols=63 Identities=22% Similarity=0.234 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 432 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 432 ~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
+|+....+...+|++.-++..+++.++.|+=.+..++-+.-.-++..-..|.+.|.++--|.+
T Consensus 555 ~W~~~k~e~~~~L~~~ne~~i~Le~~I~~Lfk~y~~~~~e~~yi~~lK~~lk~kiK~is~k~e 617 (2757)
T TIGR01612 555 NWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNE 617 (2757)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777888888888888888888886555555544444444444445555555544433
No 326
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.65 E-value=3.3e+02 Score=25.10 Aligned_cols=25 Identities=0% Similarity=0.242 Sum_probs=17.6
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVD 404 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVD 404 (506)
+-.+.++|..+. .+..+.+.||-|+
T Consensus 36 R~Y~~~~l~~l~-~I~~lr~~G~sL~ 60 (134)
T cd04779 36 RYYDETALDRLQ-LIEHLKGQRLSLA 60 (134)
T ss_pred eeECHHHHHHHH-HHHHHHHCCCCHH
Confidence 456777776554 4567789999887
No 327
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=37.64 E-value=2.8e+02 Score=28.04 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=25.1
Q ss_pred hhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH
Q 010595 377 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 411 (506)
Q Consensus 377 plqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe 411 (506)
||+.+-+.|+.++....+-|+..-+.+|-.+.||.
T Consensus 123 pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~ 157 (229)
T cd07594 123 PLRNFLEGDMKTISKERKLLENKRLDLDACKTRVK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666777777777777777777777777775
No 328
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=37.52 E-value=40 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhhHHh
Q 010595 368 SVVQELQSTSLMQMTKAKVKEMMAVLKDVES 398 (506)
Q Consensus 368 sLIetL~ksplqeLS~~dL~ea~~~L~dLe~ 398 (506)
-||+.|.+.+ .+||++|+.-|..++.|++.
T Consensus 42 rIv~IL~K~k-~dltddD~~hMrkVV~yv~r 71 (92)
T PF11338_consen 42 RIVEILRKRK-TDLTDDDYEHMRKVVGYVKR 71 (92)
T ss_pred HHHHHHhcCc-ccCCHHHHHHHHHHHHHHHH
Confidence 3788888999 99999999999999999873
No 329
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.43 E-value=2.7e+02 Score=25.86 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=11.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 010595 451 LALKEKEVAGLKESVAKTKARLSD 474 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~ 474 (506)
+...++....+++|+.++++.|-.
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555443
No 330
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=37.09 E-value=3.9e+02 Score=25.73 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=41.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHH---HHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 430 KANCVNLLESTKKELESQMNEL-ALKEKEVAGLKESVA---KTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 430 Kd~~e~~~e~~kkELEe~leeL-~qKeKEv~d~~eRv~---e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
+...+.++..++++.++..++. ...++++...++|+- .+..|+..|+....=|...+..++.|+..+.
T Consensus 26 ~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~L~~l~ 97 (185)
T PRK01194 26 SKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEHLMNIT 97 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3334555555555555554433 333344444455554 5677888888777778888888888887765
No 331
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.00 E-value=4.3e+02 Score=26.19 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=16.0
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010595 418 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELAL 453 (506)
Q Consensus 418 e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~q 453 (506)
++...+..+..+.++.+...+.+.+.+..+.++++.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554444444443333333333333
No 332
>PF13166 AAA_13: AAA domain
Probab=36.95 E-value=6.4e+02 Score=28.22 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=25.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 453 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 453 qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
..++++..++..+......+.+|+.....+...+..+-..+..|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 428 SLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444444555555666666666666555555555566666665
No 333
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=36.93 E-value=3.9e+02 Score=25.67 Aligned_cols=94 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHH----HHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 010595 406 LRNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKE----LESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES 479 (506)
Q Consensus 406 L~kKLeEV~Ear-e~~~~~~~leeeKd~~e~~~e~~kkE----LEe~leeL~-qKeKEv~d~~eRv~e~k~RL~~LE~es 479 (506)
++..|.++.... ..+-....++.+.+..+..+...... |..--++|+ ....+..+...++...+..|.++....
T Consensus 35 ~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~ 114 (221)
T PF04012_consen 35 MEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQV 114 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHhhhhhhhcccc
Q 010595 480 NRLEQIIQATQSKVTKFSQK 499 (506)
Q Consensus 480 s~L~k~v~~~kSKV~kF~~k 499 (506)
..|...|..++.|+..+..+
T Consensus 115 ~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 115 EKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 334
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.92 E-value=2.4e+02 Score=28.23 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDLELES 479 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~LE~es 479 (506)
+.+.++++.++++.+..+++||..+....
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666777777777777765433
No 335
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.57 E-value=1.7e+02 Score=31.68 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 432 NCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 432 ~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
..++.+....+||+.+.+.|.|....++.
T Consensus 239 Rt~EeL~~G~~kL~~~~etLEqq~~~L~~ 267 (365)
T KOG2391|consen 239 RTEEELNIGKQKLVAMKETLEQQLQSLQK 267 (365)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34455555677777777766666555554
No 336
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=36.48 E-value=2.6e+02 Score=25.95 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=21.1
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchhhhhh
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVDWL~k 408 (506)
-+..+.++|..+.- +..++++||.|+=++.
T Consensus 43 yR~Y~~~~l~rl~~-I~~lr~~G~sL~eI~~ 72 (144)
T PRK13752 43 IRRYGEADVTRVRF-VKSAQRLGFSLDEIAE 72 (144)
T ss_pred CeecCHHHHHHHHH-HHHHHHcCCCHHHHHH
Confidence 46788888877654 5568899998754443
No 337
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=36.43 E-value=1.7e+02 Score=25.08 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=20.0
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchh
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVD 404 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVD 404 (506)
-+-.+.+||..+.. +..|.+.||.|+
T Consensus 36 yR~Y~~~~~~~l~~-I~~lr~~G~~l~ 61 (97)
T cd04782 36 YRYYTLEQFEQLDI-ILLLKELGISLK 61 (97)
T ss_pred CccCCHHHHHHHHH-HHHHHHcCCCHH
Confidence 36788888887766 456999999884
No 338
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=36.41 E-value=1.9e+02 Score=28.48 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhh
Q 010595 466 AKTKARLSDLELES 479 (506)
Q Consensus 466 ~e~k~RL~~LE~es 479 (506)
.+++.+|.+|+.+.
T Consensus 156 ~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 156 EELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 339
>PRK14164 heat shock protein GrpE; Provisional
Probab=36.36 E-value=50 Score=33.20 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010595 441 KKELESQMNELALKEKEVAGLKESVA 466 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~ 466 (506)
++++++....|.+...+....|.|..
T Consensus 83 e~el~el~d~llR~~AE~eN~RkR~~ 108 (218)
T PRK14164 83 EAQLAERTEDLQRVTAEYANYRRRTE 108 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555544
No 340
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.14 E-value=2.3e+02 Score=26.81 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 010595 463 ESVAKTKARLSDLELE 478 (506)
Q Consensus 463 eRv~e~k~RL~~LE~e 478 (506)
..+..++.+..+|+.+
T Consensus 175 ~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 175 KEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444455555555443
No 341
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=35.77 E-value=1.6e+02 Score=26.91 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=20.4
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhhHH
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 410 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKL 410 (506)
+..+.+|+..+.-+ ..++++||.|+=++.-|
T Consensus 37 R~Y~~~~v~~l~~I-~~lr~~GfsL~eI~~ll 67 (131)
T cd04786 37 RDYPPETVWVLEII-SSAQQAGFSLDEIRQLL 67 (131)
T ss_pred eecCHHHHHHHHHH-HHHHHcCCCHHHHHHHH
Confidence 45777777766554 44899999876444433
No 342
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=35.74 E-value=2.5e+02 Score=24.26 Aligned_cols=26 Identities=0% Similarity=0.318 Sum_probs=21.4
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchh
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVD 404 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVD 404 (506)
-+-.+++||..+. .+..|.+.||-++
T Consensus 36 ~R~Y~~~~l~~l~-~I~~l~~~G~~l~ 61 (102)
T cd04789 36 YRLYPDSDLQRLL-LIQQLQAGGLSLK 61 (102)
T ss_pred CeeCCHHHHHHHH-HHHHHHHCCCCHH
Confidence 4778899998766 7888999999985
No 343
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.52 E-value=1.8e+02 Score=25.22 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=38.9
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 457 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKE 457 (506)
-+..+.+++..+ ..+..|...||-|.=++.-++ .... +.....++...++|+.++.+|.+..+.
T Consensus 37 yR~Y~~~~i~~l-~~I~~lr~~G~sl~~i~~l~~----------~~~~-----~~~~~~l~~~~~~l~~~i~~l~~~~~~ 100 (108)
T cd01107 37 YRYYSAEQLERL-NRIKYLRDLGFPLEEIKEILD----------ADND-----DELRKLLREKLAELEAEIEELQRILRL 100 (108)
T ss_pred ccccCHHHHHHH-HHHHHHHHcCCCHHHHHHHHh----------cCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888877 478888999997643333222 1111 223445555556666666666555554
Q ss_pred HHh
Q 010595 458 VAG 460 (506)
Q Consensus 458 v~d 460 (506)
+.+
T Consensus 101 l~~ 103 (108)
T cd01107 101 LED 103 (108)
T ss_pred HHH
Confidence 444
No 344
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.48 E-value=3.1e+02 Score=24.08 Aligned_cols=9 Identities=0% Similarity=0.316 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 010595 464 SVAKTKARL 472 (506)
Q Consensus 464 Rv~e~k~RL 472 (506)
++.++..+|
T Consensus 96 ~l~e~q~~l 104 (110)
T TIGR02338 96 QLKELQEKI 104 (110)
T ss_pred HHHHHHHHH
Confidence 444444443
No 345
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.40 E-value=5e+02 Score=31.26 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=24.4
Q ss_pred hhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHH
Q 010595 377 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 412 (506)
Q Consensus 377 plqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeE 412 (506)
..++..+.+..+|.+.|.-+- .||..+|++
T Consensus 650 ~~~e~~k~~re~a~N~LE~~l------~e~q~~l~d 679 (902)
T KOG0104|consen 650 VQKEKEKSEREEASNELEAFL------FELQDKLDD 679 (902)
T ss_pred HHhhhhHHHHHHHHHHHHHHH------HHHHHHhcC
Confidence 347788888888888887664 999999998
No 346
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=35.32 E-value=3.6e+02 Score=24.88 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=31.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHH-HHHHHHHHHHHhhhhHHHHH
Q 010595 424 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVA----GLKESVA-KTKARLSDLELESNRLEQII 486 (506)
Q Consensus 424 ~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~----d~~eRv~-e~k~RL~~LE~ess~L~k~v 486 (506)
+-|+.+|+.-...|+.-+.+.|.+ +..++...- .+..++. ++.++|..|+..+.+.+.-|
T Consensus 31 ~RLKQAKeEA~~Eie~yr~qrE~e---fk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~~~k~~~~V 95 (108)
T KOG1772|consen 31 RRLKQAKEEAEKEIEEYRSQREKE---FKEKESAASGSQGALEKRLEQETDDKIAGLKTSAQKNSDDV 95 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444445554445555555444433 333444331 1223333 67788888887777765544
No 347
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=35.14 E-value=2.8e+02 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 466 AKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 466 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
.+.++=|.++..-..+|++-|..-...|..|.
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888888888888874
No 348
>PRK14159 heat shock protein GrpE; Provisional
Probab=34.84 E-value=62 Score=31.44 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010595 465 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 465 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 505 (506)
+.+++.++-++..+...+.++..-=+....+|...+|+-+|
T Consensus 39 ~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~L 79 (176)
T PRK14159 39 YDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDL 79 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555554455555555554444444
No 349
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=34.81 E-value=2.1e+02 Score=25.89 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHH-HhhhhHHHHHHHhhhhhhh
Q 010595 463 ESVAKTKARLSDLE-LESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 463 eRv~e~k~RL~~LE-~ess~L~k~v~~~kSKV~k 495 (506)
++|..+-.||+-.- .+...|+.+|..|..+|++
T Consensus 81 ~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 81 ERVEQALNRLNIPSREEIEALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443221 3333444444444444444
No 350
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=34.73 E-value=4.8e+02 Score=30.42 Aligned_cols=139 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHH--------HHHhcchhhhccHH---HHHHHHHHHhhHHhcCcchhhhhhHHHHHH---------HHHHhhhh
Q 010595 363 LECLCSVV--------QELQSTSLMQMTKA---KVKEMMAVLKDVESAQIDVDWLRNILNEIS---------EAIEFSTQ 422 (506)
Q Consensus 363 Mn~LlsLI--------etL~ksplqeLS~~---dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~---------Eare~~~~ 422 (506)
|+.|+..+ ..+.-+.+-.+-+. +|-...+.+.=|+ .-||.|=.||++-. ...++.++
T Consensus 167 Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLr---aSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r 243 (683)
T PF08580_consen 167 LETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLR---ASLDFLPMRIEEFQSRAESIFPSACEELEDR 243 (683)
T ss_pred HHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHH-------------HHHHHHHHHhhh
Q 010595 423 HQTIDAAKANCVNLLESTKKELESQ---------MNELALKEKEVAGLKESVAKT-------------KARLSDLELESN 480 (506)
Q Consensus 423 ~~~leeeKd~~e~~~e~~kkELEe~---------leeL~qKeKEv~d~~eRv~e~-------------k~RL~~LE~ess 480 (506)
|..|+.+++.++..++.+|+||-+. ..++....+.|.+.-.++.+. ..+|..++...+
T Consensus 244 ~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~ 323 (683)
T PF08580_consen 244 YERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKS 323 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHh
Q ss_pred hHHHHH------------------HHhhhhhhhccccchhhhcC
Q 010595 481 RLEQII------------------QATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 481 ~L~k~v------------------~~~kSKV~kF~~kSl~D~lL 506 (506)
..-..| .+|..|...+. ..+|.+|
T Consensus 324 ~~~~~I~ka~~~sIi~~gv~~r~n~~L~~rW~~L~--~~~d~~L 365 (683)
T PF08580_consen 324 HYFPAIYKARVLSIIDKGVADRLNADLAQRWLELK--EDMDSLL 365 (683)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHH--HHHHHhh
No 351
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=34.67 E-value=2.2e+02 Score=31.66 Aligned_cols=87 Identities=13% Similarity=0.232 Sum_probs=40.4
Q ss_pred chHHHHHHHHhhcccccccCcccch-hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHH
Q 010595 332 SISSILQSIISRYGDIAANCNLESN-SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 410 (506)
Q Consensus 332 Sqv~iV~~IFeKHpDIAsnf~lKn~-~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKL 410 (506)
-+.++-..|-++|.|+...+.--.. ..| ...|..=|..+.+.-+.+-...+|.++...+..|+..=-...++-.-|
T Consensus 26 ~k~eV~~~I~~~y~df~~~~~~~~~L~~~---~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L 102 (593)
T PF06248_consen 26 LKEEVHSMINKKYSDFSPSLQSAKDLIER---SKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVL 102 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667888899988776543322 222 122333232222222233445555666555555544322333333334
Q ss_pred HHHHHHHHhhh
Q 010595 411 NEISEAIEFST 421 (506)
Q Consensus 411 eEV~Eare~~~ 421 (506)
+.+.+.-+.++
T Consensus 103 ~~L~~i~~~l~ 113 (593)
T PF06248_consen 103 EQLQEIDELLE 113 (593)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 352
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=34.65 E-value=13 Score=41.55 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHH--HHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHH
Q 010595 361 YYLECLCSVVQELQSTSLMQMTKAKVKEMM--AVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLE 438 (506)
Q Consensus 361 ~YMn~LlsLIetL~ksplqeLS~~dL~ea~--~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e 438 (506)
.+++.|+.|+.+|.-.|.....+.+|.... ..-..|.. -.++||+..++++.+.+. .+...+.
T Consensus 167 ~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~--~~l~~L~~~~~~L~~~k~-------------~r~~~~~ 231 (619)
T PF03999_consen 167 ELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSD--ENLEKLQELLQELEEEKE-------------EREEKLQ 231 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCH--HHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 456677777788877772133333333311 11111221 245677777766555442 1222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHH-HhhhhHHHHHHHhhhhhhhccccch
Q 010595 439 STKKELESQMNELALKEKEVAG--------LKESVAKTKARLSDLE-LESNRLEQIIQATQSKVTKFSQKSL 501 (506)
Q Consensus 439 ~~kkELEe~leeL~qKeKEv~d--------~~eRv~e~k~RL~~LE-~ess~L~k~v~~~kSKV~kF~~kSl 501 (506)
.+..+|...-..|..-+.+... -..-|..++.-|.+|+ ++...|...|..++.++..+-++.+
T Consensus 232 ~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~ 303 (619)
T PF03999_consen 232 ELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCH 303 (619)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 3333333222222222222221 1234455666677776 6667777777888877777654443
No 353
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=34.64 E-value=4.1e+02 Score=31.64 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=4.2
Q ss_pred cccccccccC
Q 010595 297 FSFSGIDLAS 306 (506)
Q Consensus 297 Fsl~~i~~~~ 306 (506)
.=+.++.|+.
T Consensus 90 vlveg~~R~~ 99 (782)
T COG0466 90 VLVEGLQRVR 99 (782)
T ss_pred EEEEeeeeEE
Confidence 3344444433
No 354
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=34.55 E-value=5.6e+02 Score=26.85 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~k 490 (506)
++.|..++..|..+.- -..|+..++..|+++|.+..--+.-|.+++
T Consensus 147 r~~l~d~I~kLk~k~P----~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 147 RRKLQDEIAKLKYKDP----QSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHH-T----TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 4555555555543322 345788888888888888777766665554
No 355
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=34.49 E-value=2.1e+02 Score=24.23 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcccccccCccc---------chhHH---HHHHHHHHHHHHHHhcch
Q 010595 334 SSILQSIISRYGDIAANCNLE---------SNSMR---AYYLECLCSVVQELQSTS 377 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lK---------n~~lR---s~YMn~LlsLIetL~ksp 377 (506)
..+..++|++||++-.-|..- ++.++ ..++++|-.+|..|....
T Consensus 24 ~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~ 79 (140)
T cd01040 24 LEFYERLFKAHPETRALFSRFGGLSAALKGSPKFKAHGKRVLNALDEAIKNLDDLE 79 (140)
T ss_pred HHHHHHHHHHChhHHHHhHHhCCchHhHccCHHHHHHHHHHHHHHHHHHHhccChH
Confidence 567889999999998888652 45555 478888888888876554
No 356
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.36 E-value=2.1e+02 Score=27.85 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 462 KESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
-++|..++..+..+.....+.--+|-.|++=+.+
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3556666666666666666666666666654444
No 357
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.29 E-value=3.2e+02 Score=23.97 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=6.8
Q ss_pred hhhhHHHHHHHHHHh
Q 010595 405 WLRNILNEISEAIEF 419 (506)
Q Consensus 405 WL~kKLeEV~Eare~ 419 (506)
=|+.|+....+.+.+
T Consensus 8 qLE~KIqqAvdtI~L 22 (79)
T PRK15422 8 KLEAKVQQAIDTITL 22 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344454444444443
No 358
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.15 E-value=70 Score=31.55 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=39.5
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010595 402 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSD 474 (506)
Q Consensus 402 KVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~ 474 (506)
||-|=.-++.-.-.-.+...++..+.++-+.+++.+++..++|+ .|+++.+|+.| -|.++-+|+.+
T Consensus 106 kL~~~~l~i~~~V~~~el~eK~~~~~~Everi~~~ieE~v~eLe----~~a~~lke~~~---~i~~l~~~ik~ 171 (181)
T COG4345 106 KLNFEALTIGIEVYPKELEEKLADAMEEVERIEKTIEELVSELE----SLANKLKEVTD---VINSLVERIKQ 171 (181)
T ss_pred ccccccceeeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHc
Confidence 66676555544433344444455555665666666666665555 67778888888 45555555544
No 359
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.07 E-value=2.8e+02 Score=23.25 Aligned_cols=32 Identities=13% Similarity=0.377 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSK 492 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSK 492 (506)
+|..+.+...-+..|.....++.+-+..++.+
T Consensus 38 Lr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 38 LRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 360
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=33.94 E-value=2e+02 Score=23.30 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHH-HHHHHhhhhhhhc
Q 010595 438 ESTKKELESQMNELA-----LKEKEVAGLKESVAKTKARLSDLELESNRLE-QIIQATQSKVTKF 496 (506)
Q Consensus 438 e~~kkELEe~leeL~-----qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~-k~v~~~kSKV~kF 496 (506)
..+..+|...+..+. ++...+.++...+.+..+=|.+|+++...+. ..-..+++||+.|
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~y 66 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSY 66 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
No 361
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=33.88 E-value=4.5e+02 Score=28.23 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=6.6
Q ss_pred cCcccchhHHHHH
Q 010595 350 NCNLESNSMRAYY 362 (506)
Q Consensus 350 nf~lKn~~lRs~Y 362 (506)
-.+..+...|+-+
T Consensus 210 ~~~~d~kDWR~hl 222 (359)
T PF10498_consen 210 TIRADAKDWRSHL 222 (359)
T ss_pred eccCCcchHHHHH
Confidence 3344555666543
No 362
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=33.63 E-value=5.2e+02 Score=26.42 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=55.0
Q ss_pred cccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHH
Q 010595 348 AANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID 427 (506)
Q Consensus 348 Asnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~le 427 (506)
.++++|.-...+. ||.|-..+...- .+-++.-+.++...+.+++...-.|+==..+|.++ +.-+ -.+
T Consensus 29 ~~~~kL~~egA~a-----LC~l~~L~~~v~-~~~ad~l~~~~~~~~~~i~~~~~~v~~~~~~l~~~-~~~~------l~~ 95 (286)
T PF11727_consen 29 NADCKLNGEGAAA-----LCTLKDLVEKVR-NETADYLVKETEDFLGDIKLHKEQVDHRVERLRSL-EKGK------LTD 95 (286)
T ss_pred CccCccCHHHHHH-----HHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcC------CCH
Confidence 5666776666554 444444444432 34455556677777777765554543222355555 3111 122
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010595 428 AAKANCVNLLESTKKELESQMNELALKEKEVAGL 461 (506)
Q Consensus 428 eeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~ 461 (506)
...+.+....+.+++++.+++.......+.+.+.
T Consensus 96 ~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 129 (286)
T PF11727_consen 96 SDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEET 129 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666677777777777766555555553
No 363
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.52 E-value=3e+02 Score=23.29 Aligned_cols=10 Identities=20% Similarity=0.136 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 010595 464 SVAKTKARLS 473 (506)
Q Consensus 464 Rv~e~k~RL~ 473 (506)
.-..|.+||.
T Consensus 54 e~~~~~~rl~ 63 (72)
T PF06005_consen 54 ERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 364
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.45 E-value=3.7e+02 Score=33.69 Aligned_cols=11 Identities=9% Similarity=-0.007 Sum_probs=4.9
Q ss_pred CCcchhhHHHh
Q 010595 74 NPYHECGERCF 84 (506)
Q Consensus 74 NPyHeC~e~C~ 84 (506)
.++-.|-.|-|
T Consensus 134 s~Wiv~LhyAF 144 (1317)
T KOG0612|consen 134 SEWIVQLHYAF 144 (1317)
T ss_pred cHHHHHHHHHh
Confidence 44444444444
No 365
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=33.44 E-value=2.4e+02 Score=22.13 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 465 VAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 465 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
...++.++.+|......|...+..-+.+++
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345566666666666666665555555543
No 366
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.37 E-value=4.3e+02 Score=33.14 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLS 473 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~ 473 (506)
++++++.+.++.+.+.+..+++...+..|.
T Consensus 520 ~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 520 LEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333444444444443344444443333
No 367
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.36 E-value=2e+02 Score=32.65 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=13.1
Q ss_pred chhhhccHHHHHHHHHHHhh
Q 010595 376 TSLMQMTKAKVKEMMAVLKD 395 (506)
Q Consensus 376 splqeLS~~dL~ea~~~L~d 395 (506)
+.|--||++||-+|...--+
T Consensus 406 SDlfvLskdDl~~aL~eYP~ 425 (536)
T KOG0500|consen 406 SDLFVLSKDDLWEALSEYPD 425 (536)
T ss_pred ceeeEeeHHHHHHHHHhCCH
Confidence 44567888888877654433
No 368
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=33.33 E-value=20 Score=32.75 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010595 432 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 472 (506)
Q Consensus 432 ~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL 472 (506)
.....+..+.+++++..+.+.++..++...+.|...-..++
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~ 55 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEA 55 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666655555444433
No 369
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.20 E-value=8.8e+02 Score=28.70 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010595 437 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 492 (506)
Q Consensus 437 ~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSK 492 (506)
.+.++.++++-...|.+.+..+.+.+..+..++..+.+||.+-.+|...+..+++.
T Consensus 568 ~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 568 LEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33345556666666777777777777777788888888888888887777666654
No 370
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.12 E-value=3.4e+02 Score=27.40 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010595 430 KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 430 Kd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ 477 (506)
+..+...+..+..++....++...++.++..|+.++.+.+.-+.....
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555666666665555555554444443
No 371
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=32.67 E-value=8.7e+02 Score=28.44 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 010595 464 SVAKTKARLSDLELESNRL 482 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L 482 (506)
+...+.++|..|+.....|
T Consensus 190 ~~~~~~~q~~~le~ki~~l 208 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSL 208 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444454444444444
No 372
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=32.66 E-value=1.2e+02 Score=35.98 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 440 TKKELESQMNELALKEKEVAGL-------KESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~-------~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
+.++++...+++...++.+..- .+.++.-+++|.+++.+..+|.+.|..++.
T Consensus 934 L~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 934 LEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444331 256777799999999999999998888873
No 373
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=32.65 E-value=4.9e+02 Score=26.00 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhHHhcCcchhhhhhHHHH
Q 010595 385 KVKEMMAVLKDVESAQIDVDWLRNILNE 412 (506)
Q Consensus 385 dL~ea~~~L~dLe~aGfKVDWL~kKLeE 412 (506)
|+.++....+-|+..-+.+|-.++||..
T Consensus 112 ~~k~i~k~RKkLe~rRLdyD~~ksk~~k 139 (215)
T cd07593 112 EMKEYHSARKKLESRRLAYDAALTKSQK 139 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666777666666666666653
No 374
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=32.50 E-value=7.6e+02 Score=27.72 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=12.4
Q ss_pred hhhccHHHHHHHHHHHhhHH
Q 010595 378 LMQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe 397 (506)
++..|.+.|.+|...+..+-
T Consensus 394 lq~~t~~~i~~ml~~V~~ii 413 (507)
T PF05600_consen 394 LQQQTAESIEEMLSAVEEII 413 (507)
T ss_pred HHhcCHHHHHHHHHHHHHHH
Confidence 45667777776666555543
No 375
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.34 E-value=8.1e+02 Score=27.99 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=12.4
Q ss_pred ccccCcccchhHHHHHHHHHHHHH
Q 010595 347 IAANCNLESNSMRAYYLECLCSVV 370 (506)
Q Consensus 347 IAsnf~lKn~~lRs~YMn~LlsLI 370 (506)
|...|.-.+|.+=....|.|...-
T Consensus 157 i~Is~~~~dP~~Aa~iaN~la~~Y 180 (754)
T TIGR01005 157 IAIEFRSEDPKLAAAIPDAIAAAY 180 (754)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHH
Confidence 334455555665555555554443
No 376
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=32.26 E-value=5.2e+02 Score=25.70 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 010595 408 NILNEISEAI 417 (506)
Q Consensus 408 kKLeEV~Ear 417 (506)
.||.++.+..
T Consensus 8 ~k~q~L~dki 17 (207)
T PRK01005 8 DKLKQICDAL 17 (207)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 377
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.26 E-value=2.6e+02 Score=29.40 Aligned_cols=21 Identities=5% Similarity=-0.034 Sum_probs=11.3
Q ss_pred cccCcccchhHHHHHHHHHHH
Q 010595 348 AANCNLESNSMRAYYLECLCS 368 (506)
Q Consensus 348 Asnf~lKn~~lRs~YMn~Lls 368 (506)
...|.-.+|..=...+|.+..
T Consensus 135 ~is~~~~dp~~A~~i~n~~~~ 155 (444)
T TIGR03017 135 SIEFSGVDPRFAATVANAFAQ 155 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHH
Confidence 334555566665555555554
No 378
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=32.19 E-value=2.8e+02 Score=23.97 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
|+..+..|......+.++..|+.+...+|..|+.....+..++
T Consensus 23 Lq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 23 LQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555555555566667777777777776666655443
No 379
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.03 E-value=8.5e+02 Score=28.15 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=13.8
Q ss_pred HHHHHHHhhcccccccCcccchhHHHHHHH
Q 010595 335 SILQSIISRYGDIAANCNLESNSMRAYYLE 364 (506)
Q Consensus 335 ~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn 364 (506)
..+..+-+|-++... +|..+|+-.|-
T Consensus 159 ~~~EaL~ekLk~~~e----en~~lr~k~~l 184 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEE----ENTQLRSKAML 184 (596)
T ss_pred HHHHHHHhhcCChHH----HHHHHHHHHHH
Confidence 444555555555433 46666665543
No 380
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=31.91 E-value=4.9e+02 Score=28.99 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHhhh-hHHHHHHHhhhhh
Q 010595 444 LESQMNELALKE-KEVAGLKESVAKTKARLSDLELESN-RLEQIIQATQSKV 493 (506)
Q Consensus 444 LEe~leeL~qKe-KEv~d~~eRv~e~k~RL~~LE~ess-~L~k~v~~~kSKV 493 (506)
||++|.+|-+.. -|+..++..+.-|.+|+.=..-++. +|...+...+..+
T Consensus 311 LEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtri 362 (455)
T KOG3850|consen 311 LEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRI 362 (455)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655543 4666677677777777665553333 3444444444443
No 381
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=31.81 E-value=15 Score=41.51 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHhcCcchhhhhhHHHHHHHHH
Q 010595 396 VESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 396 Le~aGfKVDWL~kKLeEV~Ear 417 (506)
+...-..|.=.++||+++...+
T Consensus 310 ~~klE~~ve~YKkKLed~~~lk 331 (713)
T PF05622_consen 310 ADKLENEVEKYKKKLEDLEDLK 331 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666665444
No 382
>PF15456 Uds1: Up-regulated During Septation
Probab=31.73 E-value=4.2e+02 Score=24.49 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=23.8
Q ss_pred chhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH
Q 010595 376 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 411 (506)
Q Consensus 376 splqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe 411 (506)
...+=||-+++.+.-..+..|. -.++-|+.+|.
T Consensus 14 ~~feiLs~eEVe~LKkEl~~L~---~R~~~lr~kl~ 46 (124)
T PF15456_consen 14 KEFEILSFEEVEELKKELRSLD---SRLEYLRRKLA 46 (124)
T ss_pred HcCcccCHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3456788888888888777776 46667776666
No 383
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=31.67 E-value=5.6e+02 Score=27.51 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010595 467 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 467 e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 505 (506)
+....|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~ 326 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGV 326 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeE
Confidence 445555555555556666666666777777777777775
No 384
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.65 E-value=3.5e+02 Score=23.58 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 483 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~ 483 (506)
.+..+.+.+.-.++..++..+...+..++.+...++.....+.
T Consensus 66 ~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 66 EKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555666666666666666666666655555443
No 385
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.30 E-value=3.7e+02 Score=29.17 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=12.2
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcc
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQID 402 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfK 402 (506)
++-+.+...+.|.. .-|+.+||+
T Consensus 287 ReqTHtrhYElyRr-~kL~~Mgf~ 309 (406)
T KOG3859|consen 287 REQTHTRHYELYRR-CKLEEMGFK 309 (406)
T ss_pred hhhccccchHHHHH-HHHHHcCCc
Confidence 33444555555554 346677773
No 386
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.27 E-value=3.3e+02 Score=30.14 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 461 LKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
+.+.+.+++.+|..++.....++.-+
T Consensus 73 l~~e~~~l~~~l~~~e~~~~~~~~~l 98 (429)
T COG0172 73 LIAEVKELKEKLKELEAALDELEAEL 98 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444555555555555444444333
No 387
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=31.16 E-value=4.6e+02 Score=24.84 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595 460 GLKESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~ess~L~k 484 (506)
.+...+.++..|+..++.+...+.+
T Consensus 167 ~~~~ei~~~~~~~~~~~~~~~~is~ 191 (236)
T PF09325_consen 167 QAENEIEEAERRVEQAKDEFEEISE 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555544444433
No 388
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=30.97 E-value=4.4e+02 Score=24.55 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
-+....+=+.+|+.+..+-+++|.
T Consensus 94 llk~y~~~~~~L~k~I~~~e~iI~ 117 (126)
T PF09403_consen 94 LLKKYKDLLNKLDKEIAEQEQIID 117 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555443
No 389
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=30.79 E-value=4.9e+02 Score=27.24 Aligned_cols=17 Identities=12% Similarity=0.454 Sum_probs=8.6
Q ss_pred HHHHHHHHhhccccccc
Q 010595 334 SSILQSIISRYGDIAAN 350 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsn 350 (506)
.+-+..|+.||-|+-..
T Consensus 21 eeK~~~L~kk~~ell~e 37 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEE 37 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555433
No 390
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.61 E-value=6.1e+02 Score=26.18 Aligned_cols=103 Identities=12% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhhccHHHHHHHHHHHhhHHhcCc--chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHH---------HHH
Q 010595 378 LMQMTKAKVKEMMAVLKDVESAQI--DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKE---------LES 446 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~aGf--KVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkE---------LEe 446 (506)
...+.+.=+..+...+.++....- -++||++.|+++.... +..+..+...+.+ ...
T Consensus 145 A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l-------------~~ae~~l~~fr~~~~~~d~~~~~~~ 211 (362)
T TIGR01010 145 AQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRL-------------NATKAELLKYQIKNKVFDPKAQSSA 211 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhCCCcChHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHhhhhh
Q 010595 447 QMNELALKEKEVAGLKESVAKTKARLSD-------LELESNRLEQIIQATQSKV 493 (506)
Q Consensus 447 ~leeL~qKeKEv~d~~eRv~e~k~RL~~-------LE~ess~L~k~v~~~kSKV 493 (506)
...-+...+.+..+.+.++.+++.+... |+.+...|...|.....++
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHh
No 391
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=30.52 E-value=3.4e+02 Score=24.99 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 010595 464 SVAKTKARLSDLE 476 (506)
Q Consensus 464 Rv~e~k~RL~~LE 476 (506)
.++++..|+.+||
T Consensus 127 ~~~~~~~riaEle 139 (139)
T PF13935_consen 127 EIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHhcC
Confidence 4445566666664
No 392
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.51 E-value=7.4e+02 Score=26.95 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=12.4
Q ss_pred HHHHHHHhcchhhhc-cHHHHHHHHHHHhhHH
Q 010595 367 CSVVQELQSTSLMQM-TKAKVKEMMAVLKDVE 397 (506)
Q Consensus 367 lsLIetL~ksplqeL-S~~dL~ea~~~L~dLe 397 (506)
..+++.+.... +++ ...+...+...|.++.
T Consensus 339 ~~~~~~~~~~~-e~~~~~~~~~~~~~~l~~~i 369 (503)
T KOG2273|consen 339 AKVIESLSKLL-EKLTAEKDSKKLAEQLREYI 369 (503)
T ss_pred HHHHHHHHHHH-HHhhhhhhHHHhHHHHHHHH
Confidence 33333333333 444 4444444444444433
No 393
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=30.51 E-value=3.7e+02 Score=26.25 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=10.3
Q ss_pred HHhhhhhhhccccchhhhc
Q 010595 487 QATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 487 ~~~kSKV~kF~~kSl~D~l 505 (506)
..++..+++..-.+.+||.
T Consensus 126 ~~~~~~~~~~~i~AP~~G~ 144 (322)
T TIGR01730 126 ASAQLNLRYTEIRAPFDGT 144 (322)
T ss_pred HHHHHhhccCEEECCCCcE
Confidence 3344555555556666654
No 394
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=30.34 E-value=6.5e+02 Score=26.85 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=8.0
Q ss_pred HHhhHHhcCcchhhhhh
Q 010595 392 VLKDVESAQIDVDWLRN 408 (506)
Q Consensus 392 ~L~dLe~aGfKVDWL~k 408 (506)
-+..|..|.-.+.=|..
T Consensus 204 cv~QL~~An~qia~Lse 220 (306)
T PF04849_consen 204 CVKQLSEANQQIASLSE 220 (306)
T ss_pred HHHHhhhcchhHHHHHH
Confidence 34445555555544443
No 395
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.28 E-value=3.7e+02 Score=28.89 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 010595 433 CVNLLESTKKELESQMNELALK 454 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qK 454 (506)
|-..+...++.|.+..+.|...
T Consensus 37 C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 37 CSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444443444433
No 396
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.23 E-value=9.7e+02 Score=28.27 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=5.5
Q ss_pred hhhhHHHHHH
Q 010595 405 WLRNILNEIS 414 (506)
Q Consensus 405 WL~kKLeEV~ 414 (506)
|....++++.
T Consensus 583 ~~~~~l~~~r 592 (908)
T COG0419 583 TRKEELEELR 592 (908)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 397
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=30.14 E-value=5.9e+02 Score=27.63 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHH
Q 010595 384 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 384 ~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
.+|.++...+..|.. .|+|+=|+.++.++.+..
T Consensus 7 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~l 39 (367)
T PRK00578 7 ERLKDLDEKLENIRG-VLDVDALKERLEELEAEA 39 (367)
T ss_pred HHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHh
Confidence 457777777766664 588888888888887544
No 398
>PTZ00046 rifin; Provisional
Probab=30.07 E-value=1.4e+02 Score=32.38 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=43.6
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhhhhHHHHH-----------H
Q 010595 420 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLS-DLELESNRLEQII-----------Q 487 (506)
Q Consensus 420 ~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~-~LE~ess~L~k~v-----------~ 487 (506)
+|-.-++++..++-++.--.+=+|.+|.|++-+|++||-+|-.-+-==.|++|. +|..+.+.|+..| .
T Consensus 51 YDNDPeMK~Vme~F~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ekf~tL~TdI~tddIPTCVCEK 130 (358)
T PTZ00046 51 YDNDPEMKSVMENFDRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELMEKFATLQTDIQSDAIPTCVCEK 130 (358)
T ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhcccCCccccCccccccc
Confidence 444555555666666666666777788888888888887772111111244442 2444444443333 2
Q ss_pred Hhhhhhhhc
Q 010595 488 ATQSKVTKF 496 (506)
Q Consensus 488 ~~kSKV~kF 496 (506)
++--||+|+
T Consensus 131 SlADKvEK~ 139 (358)
T PTZ00046 131 SLADKVEKG 139 (358)
T ss_pred hHHHHHHHH
Confidence 566688877
No 399
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=29.77 E-value=5.9e+02 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=13.5
Q ss_pred hHHHHHHHhhhhhhhccccchhhhc
Q 010595 481 RLEQIIQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 481 ~L~k~v~~~kSKV~kF~~kSl~D~l 505 (506)
.+...+..++..+.+-.-.+.+||.
T Consensus 190 ~~~~~l~~a~~~l~~~~i~AP~dG~ 214 (327)
T TIGR02971 190 SALEAVQQAEALLELTYVKAPIDGR 214 (327)
T ss_pred HHHHHHHHHHHHHhcCEEECCCCeE
Confidence 3334444455555555566666664
No 400
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=29.66 E-value=22 Score=26.71 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.9
Q ss_pred hHHHHHHHHhhcccccccCcc
Q 010595 333 ISSILQSIISRYGDIAANCNL 353 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAsnf~l 353 (506)
....+..|.++||||+..+.-
T Consensus 15 L~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 15 LQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHHhChhHHHHHHh
Confidence 357889999999999976543
No 401
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.58 E-value=2.5e+02 Score=25.28 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
.+.++-+.=.+|.++...|..+|..+
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555444444433
No 402
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=29.55 E-value=4.4e+02 Score=25.00 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=23.1
Q ss_pred hhhhccHHHHHHHHHHHhhHHhcCcchhhhhh
Q 010595 377 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 377 plqeLS~~dL~ea~~~L~dLe~aGfKVDWL~k 408 (506)
--+-.+.+||..+ ..+..|.++||.|+=++.
T Consensus 36 gyR~Y~~~dl~rL-~~I~~lr~~G~sL~eI~~ 66 (172)
T cd04790 36 NYRLYGERDLERL-EQICAYRSAGVSLEDIRS 66 (172)
T ss_pred CCccCCHHHHHHH-HHHHHHHHcCCCHHHHHH
Confidence 3477889999888 666778999998654333
No 403
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=29.30 E-value=70 Score=26.60 Aligned_cols=30 Identities=47% Similarity=0.482 Sum_probs=23.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010595 456 KEVAGLKESVAKTKARLSDLELESNRLEQI 485 (506)
Q Consensus 456 KEv~d~~eRv~e~k~RL~~LE~ess~L~k~ 485 (506)
+||.-+|++|.+..+|..+||.+.+-|.+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556788888999999999888887653
No 404
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.30 E-value=5.4e+02 Score=25.01 Aligned_cols=8 Identities=0% Similarity=0.472 Sum_probs=3.4
Q ss_pred cccccccc
Q 010595 297 FSFSGIDL 304 (506)
Q Consensus 297 Fsl~~i~~ 304 (506)
|+|++|..
T Consensus 12 y~lKELEK 19 (188)
T PF03962_consen 12 YTLKELEK 19 (188)
T ss_pred ccHHHHHH
Confidence 44444433
No 405
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=29.29 E-value=2e+02 Score=33.68 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHh
Q 010595 381 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF 419 (506)
Q Consensus 381 LS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~ 419 (506)
|+.++--+...++.-.+...+=+.+|+.-++-+...+++
T Consensus 175 l~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I 213 (784)
T PRK10787 175 LKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRI 213 (784)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555566776666555555444
No 406
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=29.12 E-value=2.2e+02 Score=27.05 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhHHhcC
Q 010595 384 AKVKEMMAVLKDVESAQ 400 (506)
Q Consensus 384 ~dL~ea~~~L~dLe~aG 400 (506)
.||..+-..+.+|++|+
T Consensus 37 ~dik~~k~~~enledA~ 53 (131)
T KOG1760|consen 37 ADIKEAKTEIENLEDAS 53 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544443
No 407
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=29.10 E-value=5e+02 Score=24.51 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=6.5
Q ss_pred hhhhHHHHHHHHH
Q 010595 405 WLRNILNEISEAI 417 (506)
Q Consensus 405 WL~kKLeEV~Ear 417 (506)
||-+.|..+.+.|
T Consensus 42 fl~kPi~~~l~~R 54 (167)
T PRK08475 42 FAAKPLKNFYKSR 54 (167)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555444
No 408
>PHA03158 hypothetical protein; Provisional
Probab=29.09 E-value=2.1e+02 Score=29.15 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=44.0
Q ss_pred eEEeccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 010595 321 SVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 377 (506)
Q Consensus 321 tVdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksp 377 (506)
.|.||||+|+.--.++..+|-.--|- .+++++.=+...+.-||.--..-|++.
T Consensus 201 ~V~vnG~~V~y~sLpf~ERl~Rs~pP----WCv~t~~EK~~~~kQllka~kkc~~~s 253 (273)
T PHA03158 201 MVNINGKHVRFDDLPFMERIKRSGPP----WCIKTAKEKAAILKQLLKAAKKCCKNS 253 (273)
T ss_pred EEEecCEEEEeccCcHHHHHhccCCC----cEeecHHHhHHHHHHHHHHHHHHhcch
Confidence 38999999999999999998766553 578888888888888888777777776
No 409
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=28.98 E-value=4.7e+02 Score=24.26 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=5.3
Q ss_pred HHHHHHhhhhHHHH
Q 010595 472 LSDLELESNRLEQI 485 (506)
Q Consensus 472 L~~LE~ess~L~k~ 485 (506)
|+.++.+..+..++
T Consensus 93 l~Dle~K~~kyk~r 106 (136)
T PF04871_consen 93 LGDLEEKRKKYKER 106 (136)
T ss_pred HHhHHHHHHHHHHH
Confidence 33333333333333
No 410
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.95 E-value=4e+02 Score=30.44 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 463 ESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 463 eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
.+..+|-+.|.+|..+-..-+.-|..|+++.+-.
T Consensus 323 ~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 323 QKSQEWPGKLEKLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444444555555555555555666677766543
No 411
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=28.95 E-value=4.6e+02 Score=27.91 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-------------HHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 450 ELALKEKEVAGLKESVAKTKARLS-------------DLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~-------------~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
-|+.+|+||.++..+|.+.+..+. ...+..++|+.-|..-+-|++...
T Consensus 137 rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Q 197 (330)
T KOG2991|consen 137 RLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQ 197 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777765543 234556666666666677766543
No 412
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.92 E-value=4.1e+02 Score=29.49 Aligned_cols=30 Identities=37% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 453 LKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 453 qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
.+..++++++.++.+....|.+++++...+
T Consensus 72 ~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 72 ELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334445555556666666666666555544
No 413
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.79 E-value=2.2e+02 Score=24.62 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhHHh
Q 010595 384 AKVKEMMAVLKDVES 398 (506)
Q Consensus 384 ~dL~ea~~~L~dLe~ 398 (506)
.++..+..+|..|.+
T Consensus 30 ~e~~~~~~~l~~l~~ 44 (129)
T cd00890 30 TEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHhhc
Confidence 455566666666653
No 414
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=28.78 E-value=7.7e+02 Score=30.34 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHhhc
Q 010595 21 ECGMACLEKIAQGH 34 (506)
Q Consensus 21 eC~~~C~~ki~~~~ 34 (506)
+|+..|++|+...-
T Consensus 359 e~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQL 372 (1018)
T ss_pred HHHHHHHHHHHHhC
Confidence 45555555555443
No 415
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.70 E-value=3.3e+02 Score=30.59 Aligned_cols=6 Identities=0% Similarity=0.373 Sum_probs=3.1
Q ss_pred ccHHHH
Q 010595 381 MTKAKV 386 (506)
Q Consensus 381 LS~~dL 386 (506)
||-+++
T Consensus 42 ltpee~ 47 (472)
T TIGR03752 42 LSPEEL 47 (472)
T ss_pred CCcchh
Confidence 555554
No 416
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=28.62 E-value=3e+02 Score=24.74 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDLELESNR 481 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~LE~ess~ 481 (506)
|.+.+.-..+...+++++.+.|..|.+....
T Consensus 16 L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~ 46 (103)
T PF08654_consen 16 LKQLRDLSADLASQLEALSEKLETMADGAEA 46 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3333333333344444444444444444333
No 417
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=1.1e+02 Score=29.93 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 457 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
++.++..++.++++++-++..+...+.++..-=+-+..+|....|+.+||
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlL 93 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLL 93 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445666666666666666665555555555666555555554
No 418
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.24 E-value=3.7e+02 Score=24.97 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=4.3
Q ss_pred hhHHHHHHHhhh
Q 010595 480 NRLEQIIQATQS 491 (506)
Q Consensus 480 s~L~k~v~~~kS 491 (506)
..|+..+..++.
T Consensus 50 ~~lEs~~~~lk~ 61 (112)
T PF07439_consen 50 TTLESSVSTLKA 61 (112)
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 419
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.18 E-value=3e+02 Score=28.37 Aligned_cols=15 Identities=20% Similarity=0.147 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHh-cch
Q 010595 363 LECLCSVVQELQ-STS 377 (506)
Q Consensus 363 Mn~LlsLIetL~-ksp 377 (506)
.++||..++.|| ..|
T Consensus 159 vevLL~~ae~L~~vYP 174 (259)
T PF08657_consen 159 VEVLLRGAEKLCNVYP 174 (259)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 477888888887 445
No 420
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.17 E-value=1.2e+02 Score=24.08 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595 459 AGLKESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~LE~ess~L~k 484 (506)
..++.+++++.++|.+|+.-.+.-.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999877776544
No 421
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=28.15 E-value=5.1e+02 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 457 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
.......+..++.++|+.||.+..-|-+.|..|+-
T Consensus 524 qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 524 QYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33445667888888999999988888776766654
No 422
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=28.04 E-value=4.4e+02 Score=23.63 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=10.9
Q ss_pred HHHHHhcchhhhccHHHHHHHHHHHhhHH
Q 010595 369 VVQELQSTSLMQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 369 LIetL~ksplqeLS~~dL~ea~~~L~dLe 397 (506)
|+-.+--.|+..+=+..=..+...|.+.+
T Consensus 11 il~~~~~~pi~~~l~~R~~~I~~~l~~A~ 39 (147)
T TIGR01144 11 FCMKYVWPPLAKAIETRQKKIADGLASAE 39 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333333333333333333
No 423
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.97 E-value=6.9e+02 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=8.2
Q ss_pred hHHhcCcchhhhhhHHHHHH
Q 010595 395 DVESAQIDVDWLRNILNEIS 414 (506)
Q Consensus 395 dLe~aGfKVDWL~kKLeEV~ 414 (506)
+|.+-.=+.|=.++++++|.
T Consensus 58 ~l~ei~~~qd~reK~~~~I~ 77 (230)
T PF03904_consen 58 YLSEIEEKQDIREKNLKEIK 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443
No 424
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=27.95 E-value=3.8e+02 Score=22.75 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
+....+++.....++.+.+.|.+....|.+.|..+-.+|++.
T Consensus 27 q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555566666677777777777777777777777777654
No 425
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.86 E-value=6.5e+02 Score=25.50 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=19.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010595 430 KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 471 (506)
Q Consensus 430 Kd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~R 471 (506)
....+.++..++.+.+...+...++..++.-++..|.+++.-
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444554544444455444333
No 426
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=27.84 E-value=4.4e+02 Score=26.45 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHH
Q 010595 461 LKESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k 484 (506)
.+.+|+.++.||..|+.+.-+|=+
T Consensus 112 ~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 112 LKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888877766543
No 427
>COG4420 Predicted membrane protein [Function unknown]
Probab=27.81 E-value=6.4e+02 Score=25.37 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595 440 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k 484 (506)
.+++.....++|..+.-.....+.++.++++.|.+++.+......
T Consensus 132 aE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~ 176 (191)
T COG4420 132 AEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEA 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHH
Confidence 355555555566655555555666888888888888877776655
No 428
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.81 E-value=1.2e+03 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=18.8
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010595 423 HQTIDAAKANCVNLLESTKKELESQMNEL 451 (506)
Q Consensus 423 ~~~leeeKd~~e~~~e~~kkELEe~leeL 451 (506)
.+++.+-|..++..+...|.|+++-|.++
T Consensus 482 d~~l~~~kq~~d~e~~rik~ev~eal~~~ 510 (861)
T PF15254_consen 482 DQELLENKQQFDIETTRIKIEVEEALVNV 510 (861)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777777665433
No 429
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=27.75 E-value=8.1e+02 Score=28.75 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=41.8
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHh
Q 010595 368 SVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF 419 (506)
Q Consensus 368 sLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~ 419 (506)
-.+|++...- .+.+..=|..+=.++.|+..+.-.+.-|+.++..|.+..+-
T Consensus 45 l~~qe~~~~l-e~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~ 95 (766)
T PF10191_consen 45 LYSQEVNASL-EETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKA 95 (766)
T ss_pred HHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555554 78888888888899999999999999999999999987643
No 430
>PF15463 ECM11: Extracellular mutant protein 11
Probab=27.70 E-value=4.7e+02 Score=24.07 Aligned_cols=83 Identities=13% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHH-----HhhhhhhhHHHHHHhhHHHH
Q 010595 363 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI-----EFSTQHQTIDAAKANCVNLL 437 (506)
Q Consensus 363 Mn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear-----e~~~~~~~leeeKd~~e~~~ 437 (506)
|.-++...+.=+..-+..||-++-.++. |||-.+..+|.... ++....+..+.+-+.+...+
T Consensus 51 l~~~~~~~~~~q~~~fs~ls~~eWe~~G-------------d~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav 117 (139)
T PF15463_consen 51 LEELFKLSEQEQEEFFSNLSFDEWEEAG-------------DWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAV 117 (139)
T ss_pred HHHHHhcChHHHHHHHhcCCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010595 438 ESTKKELESQMNELALKEKEV 458 (506)
Q Consensus 438 e~~kkELEe~leeL~qKeKEv 458 (506)
+.....|..+|+++...-++|
T Consensus 118 ~~~~~~l~~kL~~mk~~G~ei 138 (139)
T PF15463_consen 118 RAQGEQLDRKLEKMKEGGKEI 138 (139)
T ss_pred HHHHHHHHHHHHHHHHhhccc
No 431
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.66 E-value=5.3e+02 Score=27.73 Aligned_cols=6 Identities=33% Similarity=0.551 Sum_probs=2.3
Q ss_pred hHHHHH
Q 010595 408 NILNEI 413 (506)
Q Consensus 408 kKLeEV 413 (506)
+||+|+
T Consensus 25 qKleel 30 (330)
T PF07851_consen 25 QKLEEL 30 (330)
T ss_pred HHHHHH
Confidence 333333
No 432
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.64 E-value=2e+02 Score=28.95 Aligned_cols=21 Identities=0% Similarity=-0.048 Sum_probs=14.8
Q ss_pred cchhHHHHHHHHHHHHHHHHh
Q 010595 354 ESNSMRAYYLECLCSVVQELQ 374 (506)
Q Consensus 354 Kn~~lRs~YMn~LlsLIetL~ 374 (506)
.++++-=..+-+|.+++-+|=
T Consensus 44 ~~p~lvilV~avi~gl~~~i~ 64 (201)
T COG1422 44 LPPHLVILVAAVITGLYITIL 64 (201)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 667777777777777776663
No 433
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=27.55 E-value=4.1e+02 Score=23.02 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHH
Q 010595 460 GLKESVAKTKARLSD 474 (506)
Q Consensus 460 d~~eRv~e~k~RL~~ 474 (506)
+.+.=|+++..||..
T Consensus 52 Et~~mipd~~~RL~~ 66 (90)
T PF02970_consen 52 ETKMMIPDCQQRLEK 66 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH
Confidence 333444444444443
No 434
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.50 E-value=6e+02 Score=24.92 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
++.+..+++..+...+..+..++..++.++..|-.++.-++.
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555566666666667666666666655543
No 435
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=27.49 E-value=6.4e+02 Score=25.61 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=17.8
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 411 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe 411 (506)
+.+=+.||.++....+-|+..-+.+|--++|+.
T Consensus 125 ~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~ 157 (220)
T cd07617 125 RNFLEGDWKTISKERRLLQNRRLDLDACKARLK 157 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555555555555553
No 436
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=27.37 E-value=2.4e+02 Score=28.31 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010595 450 ELALKEKEVA 459 (506)
Q Consensus 450 eL~qKeKEv~ 459 (506)
.|..++..+.
T Consensus 46 ~l~~~~~~~~ 55 (202)
T PF06818_consen 46 ELRNKESQIQ 55 (202)
T ss_pred HHHhhHHHHH
Confidence 3333333333
No 437
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.37 E-value=6.6e+02 Score=26.93 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHhh-HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010595 385 KVKEMMAVLKD-VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKE 463 (506)
Q Consensus 385 dL~ea~~~L~d-Le~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~e 463 (506)
+|.++..+|.- +..-...|.-++.+|+-|.-.- .+++.-++.+|.|+|...+-|...+.=---.-.
T Consensus 102 el~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasde-------------a~L~~Kierrk~ElEr~rkRle~LqsiRP~~Md 168 (338)
T KOG3647|consen 102 ELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDE-------------AALGSKIERRKAELERTRKRLEALQSIRPAHMD 168 (338)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
..+.+.++|..|=.-+.--.+++.+|++-++
T Consensus 169 EyE~~EeeLqkly~~Y~l~f~nl~yL~~qld 199 (338)
T KOG3647|consen 169 EYEDCEEELQKLYQRYFLRFHNLDYLKSQLD 199 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 438
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=26.98 E-value=4.5e+02 Score=24.16 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 010595 461 LKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L 482 (506)
...|+.+++.|..+|.-...++
T Consensus 70 ~~~rl~~~r~r~~~L~hR~l~v 91 (141)
T PF13874_consen 70 TSARLEEARRRHQELSHRLLRV 91 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444333
No 439
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=26.96 E-value=6.1e+02 Score=25.95 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 430 KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 430 Kd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
++.+.++||...++.+...+++.+-++++.+. +.+.++-|.......-+.+.-++||...
T Consensus 131 ResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~------l~d~~~tL~~~~~~~p~~~q~~r~~~~~ 190 (223)
T KOG0570|consen 131 RESLIMLMERQIEQRSDIVEDFKKHLRQVREV------LDDQFQTLRGKLPAPPQSSQLTRVKLQD 190 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhcccCCCCcchhhhhhhhccc
Confidence 45566666665555555555555555544441 1122233333333334455557777655
No 440
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.89 E-value=3.7e+02 Score=22.36 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=0.0
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHH-------------------HHhHHHHHHHHHHHHHHH
Q 010595 418 EFSTQHQTIDAAKANCVNLLEST---KKELESQMNELALKEKE-------------------VAGLKESVAKTKARLSDL 475 (506)
Q Consensus 418 e~~~~~~~leeeKd~~e~~~e~~---kkELEe~leeL~qKeKE-------------------v~d~~eRv~e~k~RL~~L 475 (506)
++..+++.+..........+..+ .++++.-+++|...... +..+.+++..+...+..|
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHhhhhhhhccc
Q 010595 476 ELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 476 E~ess~L~k~v~~~kSKV~kF~~ 498 (506)
+.....+...+..++.++..-.+
T Consensus 82 ~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
No 441
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=26.87 E-value=9.5e+02 Score=27.04 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcC
Q 010595 358 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ 400 (506)
Q Consensus 358 lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aG 400 (506)
+-+-++++|+.+.++- -++.+++...-...|..|+...
T Consensus 136 lC~eC~d~l~~~ld~e-----~~~~~~e~~~Y~~~l~~Le~~~ 173 (447)
T KOG2751|consen 136 LCEECMDVLLNKLDKE-----VEDAEDEVDTYKACLQRLEQQN 173 (447)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhcC
Confidence 4456677777665543 2333344443344444444433
No 442
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.86 E-value=3.6e+02 Score=22.17 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHH
Q 010595 463 ESVAKTKARLSDLE 476 (506)
Q Consensus 463 eRv~e~k~RL~~LE 476 (506)
.++..+.+||..++
T Consensus 39 ~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 39 RQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhc
Confidence 33334444444443
No 443
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.81 E-value=2.6e+02 Score=27.65 Aligned_cols=20 Identities=10% Similarity=0.375 Sum_probs=11.9
Q ss_pred hHHHHHHHHhhcccccccCc
Q 010595 333 ISSILQSIISRYGDIAANCN 352 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAsnf~ 352 (506)
-+..++.+..+||-...+..
T Consensus 64 a~~~i~~~~~~~gG~i~~~~ 83 (262)
T PF14257_consen 64 AVKKIENLVESYGGYIESSS 83 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEe
Confidence 34566677777765554444
No 444
>PF13514 AAA_27: AAA domain
Probab=26.78 E-value=8.1e+02 Score=29.62 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 449 NELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 449 eeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
+++.....++.+++.|+..|...+..++.....|
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444544444444444444433
No 445
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=26.62 E-value=2.2e+02 Score=27.92 Aligned_cols=14 Identities=7% Similarity=-0.067 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHH
Q 010595 357 SMRAYYLECLCSVV 370 (506)
Q Consensus 357 ~lRs~YMn~LlsLI 370 (506)
.|+-.+|+.-++|=
T Consensus 58 ~l~~~kl~sylGle 71 (163)
T PF03233_consen 58 WLKLSKLLSYLGLE 71 (163)
T ss_pred HHHHHHHHHHhccc
Confidence 34455555555543
No 446
>PLN02943 aminoacyl-tRNA ligase
Probab=26.61 E-value=1.7e+02 Score=35.02 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 440 TKKELESQMNELALKEKEVAGL-------KESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~-------~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
+.++|+...+++.+.++.+..- .+.++.-+++|.+++.+...|.+.|..+++
T Consensus 894 L~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 894 LSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444445444431 256677788899999998888888877764
No 447
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=26.60 E-value=3e+02 Score=29.16 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=29.0
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhH
Q 010595 349 ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV 396 (506)
Q Consensus 349 snf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dL 396 (506)
+--.|...++|++.|+--+.+.-.=-+.. -+-+++.|.++.+.|+-.
T Consensus 157 ~qq~Ps~~qlR~~llDPAinl~F~rlK~e-le~tk~Klee~QnelsAw 203 (330)
T KOG2991|consen 157 QQQQPSVAQLRSTLLDPAINLFFLRLKGE-LEQTKDKLEEAQNELSAW 203 (330)
T ss_pred HhhCcHHHHHHHHhhChHHHHHHHHHHHH-HHHHHHHHHHHHhhhhee
Confidence 44567778899988876555433222222 345677788877776643
No 448
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=26.44 E-value=1e+03 Score=27.24 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=17.0
Q ss_pred CCCccchhhhhhhccCcccccc
Q 010595 121 SNPYHECGEHCFKRNGEANARG 142 (506)
Q Consensus 121 snpyH~C~~~C~~~~~~~~~~~ 142 (506)
.-++-.|.-.|.=||.+|..+.
T Consensus 85 isslrqfEpiCKFH~~Eafnde 106 (527)
T PF15066_consen 85 ISSLRQFEPICKFHWTEAFNDE 106 (527)
T ss_pred cccccccCcchhhhhhhhcccc
Confidence 3456778888999999988863
No 449
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.39 E-value=2.3e+02 Score=26.31 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=30.6
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010595 417 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSD 474 (506)
Q Consensus 417 re~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~ 474 (506)
++++++...+++.--..-+.+..+|+.+.++++|=....-|-.. .++||++
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~-------LR~RL~~ 54 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEK-------LRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH-------HHHHhCC
Confidence 45666666666665555556666666666666665555444444 5556665
No 450
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.39 E-value=1.3e+03 Score=28.41 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=4.3
Q ss_pred CCCCCCCCc
Q 010595 161 SQPGTPLTP 169 (506)
Q Consensus 161 ~~~~~p~~~ 169 (506)
+-|.||..|
T Consensus 253 ~IP~LP~~~ 261 (980)
T KOG0980|consen 253 QIPTLPEDA 261 (980)
T ss_pred cCCCCCCCC
Confidence 345555533
No 451
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=26.39 E-value=8e+02 Score=28.83 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=44.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010595 430 KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 430 Kd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
-..|+-+++.+..-|.+=..+|.-.-.+++-++++-.+|--||.+...-.++|++-|.++
T Consensus 84 i~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~ 143 (683)
T KOG1961|consen 84 IRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDL 143 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccc
Confidence 344555555555555555667887888888888899999999999988888888866554
No 452
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.31 E-value=7.7e+02 Score=26.64 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhHHHHHH--HHHHHHHHHHHhhhh
Q 010595 450 ELALKEKEVAGLKESVA--KTKARLSDLELESNR 481 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~--e~k~RL~~LE~ess~ 481 (506)
.|...++.++++.+++. +-+=+|..|....-+
T Consensus 401 klk~e~qkikeleek~~eeedal~~all~~qeir 434 (445)
T KOG2891|consen 401 KLKAEEQKIKELEEKIKEEEDALLLALLNLQEIR 434 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444444444444443 223334444444433
No 453
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=26.31 E-value=1e+03 Score=27.31 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHhhHHhcCcchhh--------hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010595 381 MTKAKVKEMMAVLKDVESAQIDVDW--------LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELA 452 (506)
Q Consensus 381 LS~~dL~ea~~~L~dLe~aGfKVDW--------L~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~ 452 (506)
+-++-+......|.||.+-=.-|.| |..||.++.- ++-......-+.-+.+...++...++|.++++.|-
T Consensus 348 ile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~--e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~Lp 425 (531)
T PF15450_consen 348 ILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKN--EWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLP 425 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445555556666653333444 5556665543 22233333344444555555555555555555444
Q ss_pred HHHHHHHh--------HHHHH-HHHHHHHHHHHHhhhhHHH
Q 010595 453 LKEKEVAG--------LKESV-AKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 453 qKeKEv~d--------~~eRv-~e~k~RL~~LE~ess~L~k 484 (506)
+--.+|.+ ...|| ++.++|--+..+....|..
T Consensus 426 qqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~ 466 (531)
T PF15450_consen 426 QQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELAT 466 (531)
T ss_pred HHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 43333332 12222 2555555555544444433
No 454
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.28 E-value=5.2e+02 Score=31.86 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhHHhcC
Q 010595 383 KAKVKEMMAVLKDVESAQ 400 (506)
Q Consensus 383 ~~dL~ea~~~L~dLe~aG 400 (506)
...|.+-.++|.|-.+|.
T Consensus 371 ~~~lEETlSTLEYA~RAK 388 (1041)
T KOG0243|consen 371 KHNLEETLSTLEYAHRAK 388 (1041)
T ss_pred cccHHHHHHHHHHHHHhh
Confidence 356777777777776664
No 455
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.13 E-value=7.8e+02 Score=26.96 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhHH
Q 010595 384 AKVKEMMAVLKDVE 397 (506)
Q Consensus 384 ~dL~ea~~~L~dLe 397 (506)
+++.++...|..|+
T Consensus 71 ~~~~~l~~~l~~l~ 84 (525)
T TIGR02231 71 ERLAELRKQIRELE 84 (525)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555554
No 456
>PRK14149 heat shock protein GrpE; Provisional
Probab=26.01 E-value=1e+02 Score=30.40 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010595 436 LLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 471 (506)
Q Consensus 436 ~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~R 471 (506)
.++.+++++++....+.+...+....|.|...=+++
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~ 79 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSM 79 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544445555555555555555443333
No 457
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=25.96 E-value=5.8e+02 Score=27.24 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHH
Q 010595 406 LRNILNEISEAIE 418 (506)
Q Consensus 406 L~kKLeEV~Eare 418 (506)
|+.++.|..+++.
T Consensus 249 l~~Ri~et~~ak~ 261 (384)
T PF03148_consen 249 LRKRIHETQEAKN 261 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 6788888888774
No 458
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=25.95 E-value=5.3e+02 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=8.6
Q ss_pred cchhhhccHHHHHHHHHHHhhHH
Q 010595 375 STSLMQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 375 ksplqeLS~~dL~ea~~~L~dLe 397 (506)
-.|+..+=+..=..+...|.+.+
T Consensus 30 ~kpi~~~l~~R~~~I~~~l~~Ae 52 (164)
T PRK14473 30 YRPVLNLLNERTRRIEESLRDAE 52 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 459
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.91 E-value=1.1e+02 Score=29.67 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=8.9
Q ss_pred hhhhhHHHHHHHHH
Q 010595 404 DWLRNILNEISEAI 417 (506)
Q Consensus 404 DWL~kKLeEV~Ear 417 (506)
.=|++||+.+.|..
T Consensus 3 eD~EsklN~AIERn 16 (166)
T PF04880_consen 3 EDFESKLNQAIERN 16 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34677777666655
No 460
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=25.78 E-value=5.7e+02 Score=24.08 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 485 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~ 485 (506)
.+.-...++|++++ +..++.-+...-.+|..+++-|....-+-.+|++-
T Consensus 78 ~i~~~~s~~l~~~~--~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 78 NIYNQYSKSLRKMI--IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666665 34444444444445555555555555544444443
No 461
>PHA01750 hypothetical protein
Probab=25.71 E-value=4.4e+02 Score=22.77 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=6.6
Q ss_pred HHHHHHHhhhhhhh
Q 010595 482 LEQIIQATQSKVTK 495 (506)
Q Consensus 482 L~k~v~~~kSKV~k 495 (506)
|++.+..+|-||++
T Consensus 61 l~~qv~eik~k~dk 74 (75)
T PHA01750 61 LSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHhhcc
Confidence 33344445555554
No 462
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=25.70 E-value=5.8e+02 Score=28.60 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR 481 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~ 481 (506)
|..++++|...++++...-.+...-+.||.+.+....+
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ 232 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWR 232 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444555555555544443
No 463
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=25.52 E-value=1.3e+02 Score=25.84 Aligned_cols=61 Identities=11% Similarity=0.280 Sum_probs=33.1
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHH
Q 010595 346 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 410 (506)
Q Consensus 346 DIAsnf~lKn~~lRs~YMn~LlsLIetL--~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKL 410 (506)
++|.-|.+....+| +|-. .+++.-. ..+.-+..|.+|+..+.... .|...||-++=++.-|
T Consensus 5 eva~~~gvs~~tlR-~ye~--~Gll~~~~~~~~g~R~y~~~di~~l~~i~-~lr~~g~~l~~i~~~~ 67 (103)
T cd01106 5 EVAKLTGVSVRTLH-YYDE--IGLLKPSRRTENGYRLYTEEDLERLQQIL-FLKELGFSLKEIKELL 67 (103)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCceeeCHHHHHHHHHHH-HHHHcCCCHHHHHHHH
Confidence 44555555556666 3322 1222111 11223668888887776554 5888899876444443
No 464
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=25.42 E-value=8.8e+02 Score=27.10 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=0.0
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhh-hhhHHHHHHHHHHhhhhhh
Q 010595 346 DIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-LRNILNEISEAIEFSTQHQ 424 (506)
Q Consensus 346 DIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDW-L~kKLeEV~Eare~~~~~~ 424 (506)
|-|.+.++.|..+|.+.=.+|-..-..|..-- ..-=.-.-+-+.++++|.=||.| |.+.|+||..+..-+..-.
T Consensus 238 ~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~-----~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le 312 (421)
T KOG2685|consen 238 DRAERERAASAALREALDQTLRETANDLRTQA-----DAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALE 312 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred hHHHHHHhhHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010595 425 TIDAAKANCVNLLEST------------------------KKELESQMNELALKEKEVAGLKESVAKTKARLSD 474 (506)
Q Consensus 425 ~leeeKd~~e~~~e~~------------------------kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~ 474 (506)
.+-..|+.--++-.+. -.+|...+.-|.++..+.++...-+...+.||..
T Consensus 313 ~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~ 386 (421)
T KOG2685|consen 313 RAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLER 386 (421)
T ss_pred HHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.38 E-value=9.7e+02 Score=28.09 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
+-+.-++...+.++++|+..++|.+.++++-.-..+|..++...-..|
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L 635 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDL 635 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444444555555666666555555554444444444444443333333
No 466
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.34 E-value=6.9e+02 Score=25.46 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
+.+++...++|..+.++.....+.+.+++-...++.++.-+|-.--..++..|+
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 444555555666677777777778888888888888888887654445555554
No 467
>PRK00708 sec-independent translocase; Provisional
Probab=25.33 E-value=7.2e+02 Score=25.17 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=5.1
Q ss_pred cchhhhhhHHH
Q 010595 401 IDVDWLRNILN 411 (506)
Q Consensus 401 fKVDWL~kKLe 411 (506)
|.++|.+--|-
T Consensus 2 FdIG~~ELlvI 12 (209)
T PRK00708 2 FDIGWSELLVI 12 (209)
T ss_pred CCccHHHHHHH
Confidence 44555544433
No 468
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=25.22 E-value=2.7e+02 Score=27.30 Aligned_cols=42 Identities=26% Similarity=0.315 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHh
Q 010595 357 SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 398 (506)
Q Consensus 357 ~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~ 398 (506)
.--..||.-|++++-+|...-+..++..|+..+...+..|++
T Consensus 109 v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~ 150 (204)
T PRK14562 109 VPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEE 150 (204)
T ss_pred CCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345689999999999999999899999888888887777765
No 469
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.15 E-value=3e+02 Score=21.79 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010595 471 RLSDLE 476 (506)
Q Consensus 471 RL~~LE 476 (506)
.+..|+
T Consensus 48 ~~~~L~ 53 (64)
T PF00170_consen 48 ELEQLK 53 (64)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 470
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=25.14 E-value=9.3e+02 Score=26.39 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHhhhhHHHHHHHhhhhhhhcccc
Q 010595 475 LELESNRLEQIIQATQSKVTKFSQK 499 (506)
Q Consensus 475 LE~ess~L~k~v~~~kSKV~kF~~k 499 (506)
|+....+..+.|..++..-+.|++.
T Consensus 409 L~~~l~~~~~~Ld~Ie~~Y~~fh~~ 433 (473)
T PF14643_consen 409 LKEHLEKALDLLDQIEEEYEDFHKK 433 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666677777777654
No 471
>PLN02281 chlorophyllide a oxygenase
Probab=25.06 E-value=2.3e+02 Score=32.29 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 478 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~e 478 (506)
+-++++++||-...+||++.-.+|---..|+.-.-..|+++|.-
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (536)
T PLN02281 121 KSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEEL 164 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44667788887777788877777766667777777777777643
No 472
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=25.02 E-value=6e+02 Score=24.57 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 010595 464 SVAKTKARLSD 474 (506)
Q Consensus 464 Rv~e~k~RL~~ 474 (506)
+|.+|..+|.+
T Consensus 120 kv~~ME~~v~e 130 (152)
T PF11500_consen 120 KVAEMERHVTE 130 (152)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 473
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=24.94 E-value=1.1e+03 Score=27.24 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010595 448 MNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 500 (506)
Q Consensus 448 leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS 500 (506)
.++|.+...+++| +-..+.+-|.+||++.....+.+--+.+-+.+...|+
T Consensus 256 keel~~~Lq~~~d---a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~ 305 (596)
T KOG4360|consen 256 KEELDEHLQAYKD---AQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCD 305 (596)
T ss_pred HHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4455555555555 3334455666777777776666666666666555443
No 474
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.79 E-value=4e+02 Score=28.46 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 468 TKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 468 ~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
.++||.+++.|..-+.++|.-+|+=++.
T Consensus 201 L~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 201 LKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999888876663
No 475
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=24.77 E-value=6.2e+02 Score=24.17 Aligned_cols=11 Identities=27% Similarity=-0.064 Sum_probs=7.0
Q ss_pred HhhcccccccC
Q 010595 341 ISRYGDIAANC 351 (506)
Q Consensus 341 FeKHpDIAsnf 351 (506)
-.=|||..++.
T Consensus 29 ~~~HPDk~~~~ 39 (171)
T PRK05014 29 RQFHPDKFANA 39 (171)
T ss_pred HHhCcCCCCCC
Confidence 45599976543
No 476
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=24.72 E-value=1.9e+02 Score=25.92 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 442 KELESQMNELALKEKEVAGLKESVA--KTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 442 kELEe~leeL~qKeKEv~d~~eRv~--e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
.+|+...+.|++.+..-.+ ||. +++.=|++|+-....|...|..+....++=
T Consensus 9 ~eIekLqe~lk~~e~keaE---Rigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 9 EEIEKLQEQLKQAETKEAE---RIGRIALKAGLGEIEISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHcccccccCCHHHHHHHHHHHHHHHhcc
Confidence 3333333444444444444 665 678888888888888888888776655543
No 477
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.71 E-value=1.6e+02 Score=26.26 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 442 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 442 kELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
.+|.+-+.....-......+.+++..+.+++.+|+.+...|...+..+..++.++..
T Consensus 59 ~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~ 115 (118)
T cd04776 59 EEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRE 115 (118)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=24.71 E-value=6.8e+02 Score=24.63 Aligned_cols=118 Identities=8% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHhc----chhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHH---------
Q 010595 370 VQELQS----TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNL--------- 436 (506)
Q Consensus 370 IetL~k----splqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~--------- 436 (506)
|+.|.+ .|.+..--++|..+.+.|.+.+...-+.+=|++.++ .+......+..+.+.....
T Consensus 3 L~~l~~~~~~~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~------~aP~~~~~l~~~l~~l~~~~~~~~~~~~ 76 (240)
T PF12795_consen 3 LDQLNKRKLDEPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQID------QAPKEIRELQKELEALKSQDAPSKEILA 76 (240)
T ss_pred HhHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHhhhccccccccCcc
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 437 ---LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 437 ---~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
+..+.+.|......|...+....++..++.....|..++....+...+.+..+...+
T Consensus 77 ~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 77 NLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
No 479
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=24.68 E-value=7.4e+02 Score=25.08 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHH
Q 010595 333 ISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 412 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeE 412 (506)
..+...+|=..|+.+|++=.++=-.+=.+||-.+=.+=..|.+-. .++.+-+.|.-.|+=.|-+-.+
T Consensus 85 lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~-------------ral~~~e~A~~~L~KaR~k~ke 151 (218)
T cd07663 85 VAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRA-------------RALADYENSNKALDKARLKSKD 151 (218)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhhhhHHHHHHHhh
Q 010595 413 ISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT-KARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 413 V~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~-k~RL~~LE~ess~L~k~v~~~k 490 (506)
|.++. ..+.+..+.-+++.+..++||. ..+...+.+++.-+-+. ...|.....-..-|...|..+|
T Consensus 152 v~~aE------~~~~ea~~~Fe~IS~~~k~El~------rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~~~ 218 (218)
T cd07663 152 VKQAE------AHQQECCQKFEKLSESAKQELI------SFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDLFK 218 (218)
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 480
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=24.66 E-value=4.7e+02 Score=22.77 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHH
Q 010595 360 AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLES 439 (506)
Q Consensus 360 s~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~ 439 (506)
..+...+..-|+..--.||+++-+.++..+....+....+..++|=.+.|+...............++.+-+..+..-+.
T Consensus 67 ~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~ 146 (194)
T cd07307 67 EEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEE 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 440 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
...++-..|..|...... ++..-+...-.....+-....++-..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~--~~~~~L~~~~~~q~~~~~~~~~~~~~l 191 (194)
T cd07307 147 LREELIEDLNKLEEKRKE--LFLSLLLSFIEAQSEFFKEVLKILEQL 191 (194)
T ss_pred HHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHhHHHHHHhh
No 481
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.59 E-value=5.6e+02 Score=23.60 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 406 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKE---LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 406 L~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkE---LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
|+.+=.|+.-.+. +...+...++.....+-.+..+ ++....++...+.++++...|...+-+=|++=..+...|
T Consensus 25 lr~~E~E~~~l~~---el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 25 LRRLEGELASLQE---ELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHHHHhh
Q 010595 483 EQIIQATQ 490 (506)
Q Consensus 483 ~k~v~~~k 490 (506)
..-|.++|
T Consensus 102 ~~Dv~DlK 109 (120)
T PF12325_consen 102 RADVQDLK 109 (120)
T ss_pred HHHHHHHH
No 482
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=24.55 E-value=3.1e+02 Score=30.42 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010595 406 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 406 L~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ 477 (506)
+++.|..|++.+ .+|+...++-...|+.|.+..++-+|+-.-..|+.+||.+.|.
T Consensus 18 ik~Al~GvKqMK-----------------~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~ 72 (436)
T PF01093_consen 18 IKNALNGVKQMK-----------------TMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEE 72 (436)
T ss_pred HHHHHHHHHHHH-----------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=24.52 E-value=4.7e+02 Score=28.57 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcchhhh---ccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhh------hhhhHHHHHHhh
Q 010595 363 LECLCSVVQELQSTSLMQ---MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST------QHQTIDAAKANC 433 (506)
Q Consensus 363 Mn~LlsLIetL~ksplqe---LS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~------~~~~leeeKd~~ 433 (506)
|+.|+.-.++|....... -..+.+........+|+..--+..=+++.++++.++++++. +..+++++-..+
T Consensus 9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~ 88 (363)
T COG0216 9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL 88 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 010595 434 VNLLESTKKELESQM 448 (506)
Q Consensus 434 e~~~e~~kkELEe~l 448 (506)
+..+..+.++|+-.|
T Consensus 89 ~~~~~~le~~L~~lL 103 (363)
T COG0216 89 EAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHhc
No 484
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=24.47 E-value=2.6e+02 Score=30.33 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 010595 381 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK--EV 458 (506)
Q Consensus 381 LS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeK--Ev 458 (506)
++.+++.+ +.+++++..+..+ ......+.++..+..+...+..+++....+...++ .+
T Consensus 504 ~~~~~~~~-----------------~~~~~~~~~~~d~---~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~~~~l 563 (602)
T PF00012_consen 504 LSKEEIEE-----------------LKKKLEEMDEEDE---ERRERAEAKNELESYIYELRDKLEEDKDFVSEEEKKKKL 563 (602)
T ss_dssp SCHHHHHH-----------------HHHHHHHTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHHHHHH
T ss_pred cccccccc-----------------cccccchhhhhhh---hhhhccccHHHHHHHHHHHHHHHHhhhccCCHHHHHHHH
Q ss_pred HhHHHHHHHH--HHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 459 AGLKESVAKT--KARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 459 ~d~~eRv~e~--k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
.+....+.+. ..-+.+++.....|.+.+..+..++.+
T Consensus 564 ~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 564 KETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
No 485
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.44 E-value=5.5e+02 Score=27.44 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010595 414 SEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 414 ~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~k 490 (506)
...+.+-++...+......++..+....++|.+++.||++-.-.++. ..-....-+.++|-+...|++-|...+
T Consensus 122 ~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~---~~~~~s~~~~k~esei~~Ik~lvln~~ 195 (300)
T KOG2629|consen 122 ADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKN---TLVQLSRNIEKLESEINTIKQLVLNMS 195 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHhccc
No 486
>PRK10865 protein disaggregation chaperone; Provisional
Probab=24.38 E-value=1.2e+03 Score=27.58 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccccccCcccchhHHHH-HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHH
Q 010595 334 SSILQSIISRYGDIAANCNLESNSMRAY-YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 412 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lKn~~lRs~-YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeE 412 (506)
..+++.+..+| ...-++.+.+..+..+ ||.- +-+++.-|-+....|.|...+++++. +..+-+.
T Consensus 347 ~~iL~~l~~~~-e~~~~v~~~d~a~~~a~~ls~-------------ry~~~~~~pdkAi~LiD~aaa~~rl~-~~~kp~~ 411 (857)
T PRK10865 347 IAILRGLKERY-ELHHHVQITDPAIVAAATLSH-------------RYIADRQLPDKAIDLIDEAASSIRMQ-IDSKPEE 411 (857)
T ss_pred HHHHHHHhhhh-ccCCCCCcCHHHHHHHHHHhh-------------ccccCCCCChHHHHHHHHHhcccccc-cccChHH
Q ss_pred HHHHHHhhhhhhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 413 ISEAIEFSTQHQTIDAAKANCVNLLES-TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 413 V~Eare~~~~~~~leeeKd~~e~~~e~-~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
+ ..+-.....++.+++...+..+. ....+++..+++.+.+++....+++....++.|++......++++ ++-
T Consensus 412 L---~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~----l~~ 484 (857)
T PRK10865 412 L---DRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQ----AKI 484 (857)
T ss_pred H---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHH
Q ss_pred hhhh
Q 010595 492 KVTK 495 (506)
Q Consensus 492 KV~k 495 (506)
|+++
T Consensus 485 kie~ 488 (857)
T PRK10865 485 AIEQ 488 (857)
T ss_pred HHHH
No 487
>PRK11820 hypothetical protein; Provisional
Probab=24.32 E-value=8.3e+02 Score=25.49 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhh--hccHHHHHHHHHHHhhHHhcCcchh-hhhhHHHHHHHHHHhhhhhhhHHHHHH
Q 010595 355 SNSMRAYYLECLCSVVQELQSTSLM--QMTKAKVKEMMAVLKDVESAQIDVD-WLRNILNEISEAIEFSTQHQTIDAAKA 431 (506)
Q Consensus 355 n~~lRs~YMn~LlsLIetL~ksplq--eLS~~dL~ea~~~L~dLe~aGfKVD-WL~kKLeEV~Eare~~~~~~~leeeKd 431 (506)
|..+-.+|++.|-.|-+.| + . +++-++|...-.+ +.......+ |...-+.-+.+|-+-+......|.+.=
T Consensus 81 d~~l~~~y~~~l~~l~~~~---~-~~~~~~l~~ll~~p~v---~~~~~~~~~~~~~~l~~al~~AL~~l~~~R~~EG~~L 153 (288)
T PRK11820 81 NEDLAKQYLEALEELKAEL---P-EAGEISLDDLLRWPGV---LEAEEEDLEALWAALLAALDEALDDLIEMREREGAAL 153 (288)
T ss_pred CHHHHHHHHHHHHHHHHhc---C-CCCCCCHHHHhCCCCc---ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHhhhhHHHHHHHhhhhhh
Q 010595 432 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDL--ELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 432 ~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~L--E~ess~L~k~v~~~kSKV~ 494 (506)
. ..+......|+..++.+.....++.+ .--+.+++||.+| +..-.+|.|-+..+--|++
T Consensus 154 ~--~dl~~rl~~i~~~~~~i~~~~p~~~~--~~~~rL~~rl~el~~~~d~~Rl~qEval~adK~D 214 (288)
T PRK11820 154 K--ADLLQRLDAIEALVAKIEALAPEILE--EYRERLRERLEELLGELDENRLEQEVALLAQKAD 214 (288)
T ss_pred H--HHHHHHHHHHHHHHHHHHHhchHHHH--HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHcc
No 488
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.30 E-value=4.1e+02 Score=21.99 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
|+.++.-=-....|+..++.---....||.+.+.....|..-|..++-.++.+
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=24.28 E-value=6.9e+02 Score=25.64 Aligned_cols=89 Identities=25% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------
Q 010595 396 VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK------ 469 (506)
Q Consensus 396 Le~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k------ 469 (506)
++.--+-||-|..|.+=+-+.--.+...+.+-.+ +.++++++++|...++|+..-.|+..-..--++.+
T Consensus 12 ~enpeilvdvL~~Rpeilye~l~kL~pwq~latk-----~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~ 86 (231)
T COG5493 12 LENPEILVDVLTQRPEILYEVLAKLTPWQQLATK-----QDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQ 86 (231)
T ss_pred HhCcHHHHHHHHhChHHHHHHHHhhchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred --------HHHHHHHHhhhhHHHHHHHh
Q 010595 470 --------ARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 470 --------~RL~~LE~ess~L~k~v~~~ 489 (506)
+++.+||.+.+.|.-+..-+
T Consensus 87 ~~~f~a~~edi~rlE~~i~~lgaRwGil 114 (231)
T COG5493 87 EEEFRATKEDIKRLETIITGLGARWGIL 114 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
No 490
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=24.28 E-value=2e+02 Score=33.73 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010595 425 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 425 ~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~k 490 (506)
+++.+++.+.+.++.+.++++.....|.-..=..+-=.+.++.-+++|.+++.+...|.+.|..++
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.28 E-value=5.3e+02 Score=23.20 Aligned_cols=91 Identities=22% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHH----------
Q 010595 362 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKA---------- 431 (506)
Q Consensus 362 YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd---------- 431 (506)
+|+-|....+.|+.-- .+|...+.++.....-+......-..-.
T Consensus 7 ~l~~l~~~~~~l~~~~--------------------------~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lv 60 (140)
T PRK03947 7 ELEELAAQLQALQAQI--------------------------EALQQQLEELQASINELDTAKETLEELKSKGEGKETLV 60 (140)
T ss_pred HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEE
Q ss_pred ------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010595 432 ------------------------------NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 478 (506)
Q Consensus 432 ------------------------------~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~e 478 (506)
..+..++.+++.++..-+.+....+++.+.+.++.++...|.+|..+
T Consensus 61 plg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 61 PIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=24.19 E-value=5.6e+02 Score=23.51 Aligned_cols=134 Identities=8% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 010595 365 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL 444 (506)
Q Consensus 365 ~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkEL 444 (506)
+|+.|+--+--.|+..+=+..=..+...|.+.+.+.-+..=+....++....-+. +..+.++.......+..
T Consensus 17 il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~--------ea~~ii~~a~~~a~~~~ 88 (159)
T PRK13461 17 ILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKE--------EGKKIVEEYKSKAENVY 88 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh-HHHHHH-HHHHHHHHHHHhhhhHHHHH--HHhhhhhhhccccchhhhcC
Q 010595 445 ESQMNELALKEKEVAG-LKESVA-KTKARLSDLELESNRLEQII--QATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 445 Ee~leeL~qKeKEv~d-~~eRv~-e~k~RL~~LE~ess~L~k~v--~~~kSKV~kF~~kSl~D~lL 506 (506)
++.+.+....-+.+.+ ++..+. +-..-+.+|..+...|.-.+ .-++.+++.-....++|.+|
T Consensus 89 ~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~kil~~~~~~~~~~~li~~~i 154 (159)
T PRK13461 89 EEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEESIDESEHRRLIKDFI 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHH
No 493
>smart00721 BAR BAR domain.
Probab=24.18 E-value=6e+02 Score=23.86 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhcccccccCcccchhHHHH--HHHHHHHHHH----------HHhcchhhhccHHHHHHHHHHHhhHHhc
Q 010595 332 SISSILQSIISRYGDIAANCNLESNSMRAY--YLECLCSVVQ----------ELQSTSLMQMTKAKVKEMMAVLKDVESA 399 (506)
Q Consensus 332 Sqv~iV~~IFeKHpDIAsnf~lKn~~lRs~--YMn~LlsLIe----------tL~ksplqeLS~~dL~ea~~~L~dLe~a 399 (506)
....++..++.-+ +...+|-..+...... |-+.+..+++ ..-.++ ..+-..++.++...++-+..+
T Consensus 69 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~kk~~~~ 146 (239)
T smart00721 69 KLSKSLGEVYEGG-DDGEGLGADSSYGKALDKLGEALKKLLQVEESLSQVKRTFILPL-LNFLLGEFKEIKKARKKLERK 146 (239)
T ss_pred HHHHHHHHHhcCC-CCccccCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhH-HHHHHHHhHHHHHHHHHHHhH
Q ss_pred CcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH-H
Q 010595 400 QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES-VAKTKARLSDLE-L 477 (506)
Q Consensus 400 GfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eR-v~e~k~RL~~LE-~ 477 (506)
-++.|=.+.+|+.+....+... +.+....+..++.++.+.+..-.+|....-.+.+.+.. +..+-..|..++ .
T Consensus 147 ~lDyD~~~~kl~~~~~~~~~~~-----~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~ 221 (239)
T smart00721 147 LLDYDSARHKLKKAKKSKEKKK-----DEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLN 221 (239)
T ss_pred HHHHHHHHHHHHHHHHhccCCh-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHhhhhhhh
Q 010595 478 ESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 478 ess~L~k~v~~~kSKV~k 495 (506)
-.....+.+..+..-++.
T Consensus 222 y~~~~~~~l~~l~~~l~~ 239 (239)
T smart00721 222 FHRESYKLLQQLQQQLDK 239 (239)
T ss_pred HHHHHHHHHHHHHHHhcC
No 494
>PHA03161 hypothetical protein; Provisional
Probab=24.12 E-value=6.1e+02 Score=24.65 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010595 410 LNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 478 (506)
Q Consensus 410 LeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~e 478 (506)
+.....+++.+..|+.++..++ +...+..+...|++..+||+..-+=--..-+++++..+|+.+|.++
T Consensus 37 ~~Qf~~t~~~lr~~~~~~~~~~-i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkee 104 (150)
T PHA03161 37 LHQLDHTKKSLIKHENLKKQKS-IEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKED 104 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.11 E-value=2.6e+02 Score=24.55 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010595 425 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVA 466 (506)
Q Consensus 425 ~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~ 466 (506)
+++++++-+++.++.+.+.++...+.|..+.+++..+..++.
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.09 E-value=84 Score=32.49 Aligned_cols=93 Identities=16% Similarity=0.335 Sum_probs=0.0
Q ss_pred cccccccceEEeccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHH
Q 010595 313 EAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAV 392 (506)
Q Consensus 313 E~~SvvsEtVdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~ 392 (506)
|++..+..-|.=+-|+=--.....++++..+||+ ..-++-=...+...-..+|-+||..|..+- .|..++.+
T Consensus 108 ElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~-~~lv~~i~~ev~~~~~~ml~~Li~~L~~~l-------~l~~~ik~ 179 (338)
T PF04124_consen 108 ELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPN-IPLVKSIAQEVEAALQQMLSQLINQLRTPL-------KLPACIKT 179 (338)
T ss_pred hhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHHHHHHHHHHHcCcc-------cHHHHHHH
Q ss_pred HhhHHhcCc-------------chhhhhhHHHHH
Q 010595 393 LKDVESAQI-------------DVDWLRNILNEI 413 (506)
Q Consensus 393 L~dLe~aGf-------------KVDWL~kKLeEV 413 (506)
+.+|+.++. .-.||.+.|.++
T Consensus 180 v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i 213 (338)
T PF04124_consen 180 VGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEI 213 (338)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHhhhHHHH
No 497
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.06 E-value=5.7e+02 Score=25.17 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 010595 417 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR 481 (506)
Q Consensus 417 re~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~ 481 (506)
.++..-++-|...-+.....|+.-.++|+.+++-|...+...+.+|.+...+..+|.+.+....+
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL~ 169 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYLQ 169 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 498
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.02 E-value=1.1e+03 Score=28.09 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH----------------------HHhhHHHHHHHHHH
Q 010595 386 VKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA----------------------KANCVNLLESTKKE 443 (506)
Q Consensus 386 L~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leee----------------------Kd~~e~~~e~~kkE 443 (506)
+.++.....-++.-...+.-|...|..|...++.++......-+ .+..+.-+..+...
T Consensus 404 ~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~ 483 (716)
T KOG4593|consen 404 LTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQ 483 (716)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 483 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~ 483 (506)
|.+....|.+-+++..-+++.+.+-..||..|++++-+|.
T Consensus 484 L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 484 LSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLR 523 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
No 499
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.00 E-value=8.7e+02 Score=26.15 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010595 389 MMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT 468 (506)
Q Consensus 389 a~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~ 468 (506)
..++-.-+..++-.|+=|..-+...+|.++--.+|=. ..++.+.++..+...+|+..+++.......|++.
T Consensus 229 ~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---------~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~ 299 (359)
T PF10498_consen 229 KKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---------NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSER 299 (359)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 469 KARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 469 k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
...|.++-++...+++-+..-.+++
T Consensus 300 t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 300 TRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
No 500
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=23.98 E-value=4.7e+02 Score=24.72 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010595 382 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL 461 (506)
Q Consensus 382 S~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~ 461 (506)
|..||..=..++.|=-+.|+|| .+.++.+.. .++..+.++.+.+|++...+|....+++..+
T Consensus 18 s~~dLahNL~v~~~R~dL~~KV-----~~~~~~~~l-------------k~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~L 79 (126)
T PF07028_consen 18 SNSDLAHNLRVTCYRSDLGSKV-----SQKKLLEEL-------------KNLSKIQESQRSELKELKQELDVLSKELQAL 79 (126)
T ss_pred cHHHHHhhhhhhhhHhhHHHHH-----HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 010595 462 KESV 465 (506)
Q Consensus 462 ~eRv 465 (506)
+.-+
T Consensus 80 r~~~ 83 (126)
T PF07028_consen 80 RKEY 83 (126)
T ss_pred HHHH
Done!