Query 010595
Match_columns 506
No_of_seqs 115 out of 128
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 10:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 94.1 0.71 2.4E-05 47.5 14.0 58 436-493 524-581 (597)
2 2dfs_A Myosin-5A; myosin-V, in 91.9 1.3 4.5E-05 50.8 13.3 63 433-495 982-1048(1080)
3 1c1g_A Tropomyosin; contractIl 91.8 2.6 9E-05 37.0 12.5 19 464-482 84-102 (284)
4 3hnw_A Uncharacterized protein 90.3 3.2 0.00011 37.2 11.5 52 425-476 79-130 (138)
5 3vkg_A Dynein heavy chain, cyt 90.1 5.6 0.00019 50.8 17.2 22 360-382 1895-1916(3245)
6 3mq9_A Bone marrow stromal ant 89.3 3.5 0.00012 41.6 12.3 72 399-479 395-466 (471)
7 3hnw_A Uncharacterized protein 89.2 4.3 0.00015 36.4 11.5 69 419-487 66-134 (138)
8 3na7_A HP0958; flagellar bioge 88.0 3.2 0.00011 39.6 10.5 43 451-493 92-134 (256)
9 3na7_A HP0958; flagellar bioge 87.7 9 0.00031 36.5 13.4 23 450-472 119-141 (256)
10 1m1j_B Fibrinogen beta chain; 87.7 3 0.0001 44.2 10.9 52 322-374 40-92 (464)
11 3ol1_A Vimentin; structural ge 87.5 9.7 0.00033 33.0 12.4 14 398-411 45-58 (119)
12 3u1c_A Tropomyosin alpha-1 cha 85.7 9.3 0.00032 32.3 11.0 13 471-483 80-92 (101)
13 1ic2_A Tropomyosin alpha chain 85.6 7.4 0.00025 31.5 9.9 67 423-496 8-74 (81)
14 1c1g_A Tropomyosin; contractIl 83.6 22 0.00075 31.1 13.5 37 451-487 99-135 (284)
15 1wle_A Seryl-tRNA synthetase; 82.5 10 0.00036 40.2 12.2 40 457-496 117-156 (501)
16 2dfs_A Myosin-5A; myosin-V, in 82.4 3 0.0001 47.9 8.6 9 79-87 453-461 (1080)
17 3mq7_A Bone marrow stromal ant 82.1 21 0.00071 31.9 11.9 79 405-492 29-107 (121)
18 4etp_A Kinesin-like protein KA 82.1 2.8 9.5E-05 43.0 7.4 58 439-496 7-64 (403)
19 3qne_A Seryl-tRNA synthetase, 81.6 5.3 0.00018 42.4 9.5 37 460-496 75-111 (485)
20 3ghg_A Fibrinogen alpha chain; 81.3 11 0.00037 40.9 11.7 77 366-456 62-138 (562)
21 3ghg_A Fibrinogen alpha chain; 80.6 5.2 0.00018 43.2 9.0 11 407-417 70-80 (562)
22 3u59_A Tropomyosin beta chain; 79.8 22 0.00076 29.7 11.0 27 460-486 69-95 (101)
23 2ve7_C Kinetochore protein NUF 79.7 18 0.00061 35.1 11.8 60 436-495 142-201 (250)
24 1m1j_C Fibrinogen gamma chain; 79.4 9.6 0.00033 39.7 10.4 58 438-495 80-137 (409)
25 3uul_A Utrophin; spectrin repe 78.4 24 0.00082 28.2 10.8 6 404-409 16-21 (118)
26 1i84_S Smooth muscle myosin he 78.0 8.3 0.00028 44.3 10.3 14 325-338 718-731 (1184)
27 3gp4_A Transcriptional regulat 77.8 30 0.001 30.3 11.8 29 379-408 39-67 (142)
28 4h22_A Leucine-rich repeat fli 77.5 23 0.00077 30.9 10.5 70 418-494 13-82 (103)
29 3iv1_A Tumor susceptibility ge 76.4 21 0.00071 29.7 9.5 40 434-476 34-73 (78)
30 3uun_A Dystrophin; triple heli 76.4 27 0.00093 27.8 12.4 18 386-409 4-21 (119)
31 3swk_A Vimentin; cytoskeleton, 76.2 32 0.0011 28.4 11.6 79 406-490 5-83 (86)
32 3v6i_A V-type ATP synthase sub 76.1 40 0.0014 30.3 12.4 73 426-498 19-95 (187)
33 3oja_B Anopheles plasmodium-re 75.9 13 0.00045 38.1 10.2 38 461-498 542-579 (597)
34 2dq0_A Seryl-tRNA synthetase; 75.7 26 0.00088 36.5 12.4 38 460-497 73-110 (455)
35 2b9c_A Striated-muscle alpha t 74.3 50 0.0017 29.8 12.4 45 451-495 82-126 (147)
36 1u5p_A Spectrin alpha chain, b 73.3 41 0.0014 29.7 11.5 22 332-353 33-54 (216)
37 1ses_A Seryl-tRNA synthetase; 72.5 16 0.00056 37.5 9.9 37 460-496 68-104 (421)
38 1i84_S Smooth muscle myosin he 71.9 17 0.00057 41.8 10.7 10 79-88 480-489 (1184)
39 3a7p_A Autophagy protein 16; c 71.6 56 0.0019 30.2 12.1 65 423-487 70-134 (152)
40 2v71_A Nuclear distribution pr 71.2 63 0.0021 30.6 12.7 31 452-482 91-121 (189)
41 4ani_A Protein GRPE; chaperone 71.2 5.7 0.00019 38.1 5.7 57 450-506 60-116 (213)
42 2jee_A YIIU; FTSZ, septum, coi 70.4 47 0.0016 27.8 10.4 13 405-417 10-22 (81)
43 2b5u_A Colicin E3; high resolu 70.2 25 0.00085 38.0 10.7 63 435-497 314-376 (551)
44 3s4r_A Vimentin; alpha-helix, 70.0 48 0.0016 27.7 10.6 38 455-492 55-92 (93)
45 2p22_C Protein SRN2; endosome, 68.6 25 0.00084 33.1 9.3 52 436-487 87-152 (192)
46 3lss_A Seryl-tRNA synthetase; 68.4 48 0.0016 35.2 12.5 35 462-496 109-144 (484)
47 4fla_A Regulation of nuclear P 68.2 71 0.0024 29.0 12.3 13 365-377 26-38 (152)
48 3u06_A Protein claret segregat 68.1 12 0.00041 38.7 7.7 43 454-496 22-64 (412)
49 2w83_C C-JUN-amino-terminal ki 67.7 19 0.00067 29.9 7.4 60 414-480 16-75 (77)
50 3r2p_A Apolipoprotein A-I; amp 66.9 19 0.00064 32.8 8.0 27 467-493 137-164 (185)
51 2dq3_A Seryl-tRNA synthetase; 66.1 31 0.0011 35.5 10.3 37 461-497 73-109 (425)
52 3ghg_B Fibrinogen beta chain; 65.1 15 0.0005 39.2 7.7 153 322-490 36-190 (461)
53 2dc3_A Cytoglobin; myoglobin, 65.0 81 0.0028 28.5 12.9 67 333-406 45-127 (193)
54 2wtg_A Globin-like protein; me 64.6 54 0.0019 29.4 10.5 44 334-377 32-88 (159)
55 3tnu_B Keratin, type II cytosk 64.3 37 0.0013 29.4 9.1 14 404-417 11-24 (129)
56 1x79_B RAB GTPase binding effe 64.2 51 0.0017 29.0 9.8 76 379-460 16-91 (112)
57 1nfn_A Apolipoprotein E3; lipi 64.1 91 0.0031 28.8 12.2 15 330-344 22-36 (191)
58 3o0z_A RHO-associated protein 63.2 75 0.0026 29.7 11.3 75 418-496 70-155 (168)
59 3nmd_A CGMP dependent protein 63.1 26 0.00088 28.8 7.2 47 437-497 21-67 (72)
60 1lwu_C Fibrinogen gamma chain; 62.7 16 0.00053 37.0 7.2 26 466-491 29-54 (323)
61 3vem_A Helicase protein MOM1; 62.3 38 0.0013 30.1 8.6 33 471-505 80-112 (115)
62 3oja_A Leucine-rich immune mol 62.1 60 0.002 32.7 11.4 36 458-493 437-472 (487)
63 2oqq_A Transcription factor HY 61.6 20 0.00069 26.9 5.7 35 453-487 7-41 (42)
64 2fxo_A Myosin heavy chain, car 61.5 81 0.0028 27.4 14.2 42 455-496 82-123 (129)
65 2ocy_A RAB guanine nucleotide 61.3 1E+02 0.0035 28.4 13.1 63 434-496 74-148 (154)
66 2wt7_B Transcription factor MA 61.1 53 0.0018 27.9 9.0 27 370-397 8-34 (90)
67 1deq_A Fibrinogen (alpha chain 61.0 52 0.0018 34.4 10.8 14 404-417 95-108 (390)
68 2fxo_A Myosin heavy chain, car 61.0 83 0.0028 27.3 13.3 46 441-489 78-123 (129)
69 3nmd_A CGMP dependent protein 60.6 24 0.00083 29.0 6.7 24 441-464 39-62 (72)
70 3ghg_C Fibrinogen gamma chain; 59.7 38 0.0013 35.5 9.6 53 442-494 84-136 (411)
71 3s84_A Apolipoprotein A-IV; fo 59.1 49 0.0017 32.3 9.8 50 448-497 200-251 (273)
72 2l5g_B Putative uncharacterize 57.4 17 0.0006 27.2 4.8 30 450-479 10-39 (42)
73 3iv1_A Tumor susceptibility ge 57.2 72 0.0025 26.5 9.0 60 433-495 12-71 (78)
74 1jf3_A Monomer hemoglobin comp 57.1 27 0.00092 29.6 6.8 43 334-376 28-76 (147)
75 2dq0_A Seryl-tRNA synthetase; 57.0 37 0.0012 35.4 9.0 24 457-480 77-100 (455)
76 4ad8_A DNA repair protein RECN 55.8 91 0.0031 32.0 11.7 46 322-370 129-177 (517)
77 3lax_A Phenylacetate-coenzyme 55.5 6.1 0.00021 32.0 2.4 32 318-352 3-34 (109)
78 2v66_B Nuclear distribution pr 54.9 1.1E+02 0.0037 26.8 11.1 13 400-412 16-28 (111)
79 1mba_A Myoglobin; oxygen stora 54.6 29 0.001 29.5 6.6 43 334-376 27-82 (147)
80 1ses_A Seryl-tRNA synthetase; 54.1 59 0.002 33.4 9.9 27 455-481 70-96 (421)
81 1fzc_C Fibrin; blood coagulati 53.8 6.4 0.00022 39.7 2.7 49 447-495 2-50 (319)
82 1q06_A Transcriptional regulat 53.6 40 0.0014 29.1 7.4 27 379-406 37-63 (135)
83 3pt8_B Hemoglobin III; oxygen 53.3 27 0.00092 29.9 6.2 41 334-374 28-82 (152)
84 3u1c_A Tropomyosin alpha-1 cha 53.1 1E+02 0.0035 25.9 13.2 37 424-460 12-48 (101)
85 1q08_A Zn(II)-responsive regul 52.9 48 0.0016 26.4 7.3 17 390-406 6-22 (99)
86 1it2_A Hemoglobin; hagfish, de 52.9 26 0.0009 30.2 6.1 42 334-375 35-88 (146)
87 3i00_A HIP-I, huntingtin-inter 52.7 54 0.0019 28.8 8.1 49 431-482 11-59 (120)
88 3s84_A Apolipoprotein A-IV; fo 52.6 1.7E+02 0.0059 28.4 16.7 14 480-493 128-141 (273)
89 1wle_A Seryl-tRNA synthetase; 51.6 1.2E+02 0.0043 32.0 12.1 23 457-479 124-146 (501)
90 1gmj_A ATPase inhibitor; coile 51.3 90 0.0031 26.3 8.8 29 449-477 51-79 (84)
91 4hrt_B Hemoglobin B chain; oxy 50.9 21 0.00073 30.9 5.2 64 334-404 37-112 (152)
92 2zs0_A Extracellular giant hem 50.7 35 0.0012 29.0 6.5 43 334-376 29-80 (140)
93 1m1j_C Fibrinogen gamma chain; 50.5 1.5E+02 0.0051 30.8 12.3 13 385-397 39-51 (409)
94 2b9c_A Striated-muscle alpha t 50.5 1.4E+02 0.0049 26.8 12.0 32 464-495 74-105 (147)
95 1ic2_A Tropomyosin alpha chain 50.0 98 0.0034 24.8 10.3 33 441-473 40-72 (81)
96 1gqe_A Release factor 2, RF2; 49.9 1.6E+02 0.0055 30.4 12.2 32 384-416 9-40 (365)
97 3pt8_A Hemoglobin II; oxygen c 49.7 23 0.00079 30.3 5.2 42 334-375 28-83 (152)
98 3vkg_A Dynein heavy chain, cyt 49.4 93 0.0032 40.2 12.3 57 438-494 2017-2073(3245)
99 3tnu_A Keratin, type I cytoske 49.0 89 0.0031 27.1 8.9 14 404-417 13-26 (131)
100 2e7s_A RAB guanine nucleotide 48.5 23 0.0008 32.1 5.2 19 434-452 62-80 (135)
101 2efr_A General control protein 48.3 1.6E+02 0.0056 26.9 13.4 14 444-457 75-88 (155)
102 4emc_A Monopolin complex subun 48.1 64 0.0022 30.8 8.3 60 426-485 11-70 (190)
103 3trt_A Vimentin; cytoskeleton, 47.1 1E+02 0.0035 24.1 8.2 62 437-498 7-77 (77)
104 1hlm_A Hemoglobin (cyano Met); 46.7 28 0.00096 30.0 5.3 43 333-375 36-91 (159)
105 1gmj_A ATPase inhibitor; coile 46.1 97 0.0033 26.1 8.2 22 469-490 57-78 (84)
106 2no2_A HIP-I, huntingtin-inter 46.0 1.4E+02 0.0049 25.6 10.5 47 436-482 55-101 (107)
107 1yhu_C Hemoglobin B1A chain; g 46.0 58 0.002 27.9 7.2 64 334-404 34-108 (148)
108 4fla_A Regulation of nuclear P 45.8 1.4E+02 0.0046 27.1 9.8 22 461-482 119-140 (152)
109 3gpv_A Transcriptional regulat 45.8 64 0.0022 28.3 7.6 29 379-408 53-81 (148)
110 3htk_A Structural maintenance 45.2 93 0.0032 23.2 7.8 28 441-468 25-52 (60)
111 1m1j_B Fibrinogen beta chain; 45.1 2.6E+02 0.0088 29.7 13.2 9 468-476 180-188 (464)
112 1dkg_A Nucleotide exchange fac 45.0 45 0.0015 31.3 6.8 39 468-506 58-96 (197)
113 1sct_A Hemoglobin II (carbonmo 44.8 47 0.0016 28.5 6.4 42 334-375 35-87 (150)
114 3uux_B Mitochondrial division 44.4 1.4E+02 0.0048 29.4 10.2 25 470-494 198-222 (242)
115 3etw_A Adhesin A; antiparallel 43.8 1.7E+02 0.0059 25.9 11.3 37 467-503 72-109 (119)
116 2lhb_A Hemoglobin V (cyano Met 43.7 51 0.0018 28.2 6.5 42 334-375 35-90 (149)
117 1ci6_A Transcription factor AT 43.6 73 0.0025 24.8 6.7 33 455-487 29-61 (63)
118 2zs0_C Extracellular giant hem 43.3 52 0.0018 28.2 6.5 64 334-404 33-107 (147)
119 1x9f_B Erythrocruorin, globin 43.1 52 0.0018 28.0 6.4 42 334-375 31-81 (145)
120 2iak_A Bullous pemphigoid anti 43.1 1.6E+02 0.0053 26.7 10.0 81 333-413 51-143 (224)
121 1cun_A Protein (alpha spectrin 42.9 1.7E+02 0.0057 25.5 13.6 22 331-352 29-50 (213)
122 2xu6_A MDV1 coiled coil; prote 42.5 1.4E+02 0.0048 24.5 8.4 44 441-494 23-66 (72)
123 1m1j_A Fibrinogen alpha subuni 42.0 2.2E+02 0.0076 30.5 12.0 51 404-460 93-143 (491)
124 3u59_A Tropomyosin beta chain; 42.0 1.5E+02 0.0051 24.6 13.4 37 424-460 12-48 (101)
125 2bk9_A CG9734-PA; oxygen trans 41.9 63 0.0021 27.7 6.8 41 334-374 25-77 (153)
126 1hlb_A Hemoglobin (deoxy); oxy 41.2 22 0.00076 30.7 3.8 43 333-375 36-91 (158)
127 1yhu_D Hemoglobin B2 chain; gl 41.2 67 0.0023 27.5 6.8 43 334-376 33-84 (149)
128 1yhu_B Giant hemoglobins B cha 41.0 54 0.0018 27.7 6.1 43 333-375 30-81 (144)
129 4etp_A Kinesin-like protein KA 40.7 47 0.0016 34.0 6.7 37 433-469 22-58 (403)
130 1fxk_A Prefoldin; archaeal pro 40.5 1.4E+02 0.0049 24.0 8.6 33 462-494 71-103 (107)
131 1q08_A Zn(II)-responsive regul 40.2 83 0.0028 25.0 6.8 8 410-417 19-26 (99)
132 3lb2_A Dehaloperoxidase A; glo 39.4 39 0.0013 29.3 5.1 43 334-376 18-73 (137)
133 1kd8_B GABH BLL, GCN4 acid bas 39.4 43 0.0015 24.4 4.3 24 463-486 8-31 (36)
134 1x9f_A Globin IV, extracellula 39.2 56 0.0019 28.3 6.0 58 334-398 36-102 (151)
135 2lem_A Apolipoprotein A-I; lip 38.8 2.4E+02 0.0083 26.1 11.8 38 379-416 30-69 (216)
136 1sct_B Hemoglobin II (carbonmo 38.5 39 0.0013 28.9 4.9 42 334-375 36-88 (151)
137 2yy0_A C-MYC-binding protein; 38.3 33 0.0011 26.3 3.9 12 463-474 40-51 (53)
138 1deb_A APC protein, adenomatou 38.1 1.2E+02 0.0042 23.6 7.0 32 462-493 23-54 (54)
139 2vyw_A Hemoglobin; trematode, 37.9 68 0.0023 27.7 6.4 42 334-375 30-84 (148)
140 1h97_A Globin-3; HET: HEM; 1.1 37.8 54 0.0018 28.4 5.7 41 334-374 29-82 (147)
141 1gdj_A Leghemoglobin (deoxy); 37.8 1.8E+02 0.0062 24.4 12.9 69 334-408 27-109 (153)
142 1u5t_A Appears to BE functiona 37.5 35 0.0012 33.1 4.9 69 334-404 40-150 (233)
143 1t3j_A Mitofusin 1; coiled coi 37.3 1.3E+02 0.0045 25.8 7.8 51 432-482 40-90 (96)
144 2a01_A Apolipoprotein A-I; fou 37.2 1.1E+02 0.0038 29.0 8.3 13 481-493 195-207 (243)
145 4dk0_A Putative MACA; alpha-ha 37.1 1.4E+02 0.0046 28.7 9.0 17 489-505 148-164 (369)
146 2zqm_A Prefoldin beta subunit 37.0 1.7E+02 0.0059 23.9 9.0 34 462-495 76-109 (117)
147 4dbg_B Ring finger protein 31; 36.3 93 0.0032 29.0 7.2 47 367-417 15-61 (162)
148 3ol1_A Vimentin; structural ge 36.3 2.1E+02 0.0071 24.6 10.1 81 404-490 23-103 (119)
149 3mq9_A Bone marrow stromal ant 36.3 3.4E+02 0.012 27.1 14.2 57 440-496 402-469 (471)
150 3uul_A Utrophin; spectrin repe 36.0 1.6E+02 0.0055 23.3 11.1 32 386-417 18-49 (118)
151 2v71_A Nuclear distribution pr 35.8 2.9E+02 0.0098 26.1 15.8 14 384-397 49-62 (189)
152 1nfn_A Apolipoprotein E3; lipi 35.5 46 0.0016 30.8 5.2 18 477-494 165-182 (191)
153 3p8c_E Probable protein brick1 35.2 1.4E+02 0.0049 24.6 7.4 45 451-495 25-70 (75)
154 3kqg_A Langerin, C-type lectin 34.7 43 0.0015 28.9 4.6 35 444-478 4-38 (182)
155 1b0b_A Hemoglobin; hemoprotein 34.4 50 0.0017 27.9 4.9 42 334-375 26-81 (142)
156 2c0k_A Hemoglobin; oxygen tran 34.3 76 0.0026 27.3 6.1 41 334-374 25-78 (151)
157 2a01_A Apolipoprotein A-I; fou 34.2 3E+02 0.01 25.9 12.9 29 463-491 154-183 (243)
158 3lss_A Seryl-tRNA synthetase; 34.1 3E+02 0.01 29.2 11.6 25 458-482 113-137 (484)
159 3gxs_A Phenylacetate-coenzyme 33.8 19 0.00064 29.4 2.0 33 318-353 3-35 (109)
160 3etw_A Adhesin A; antiparallel 33.4 2E+02 0.0068 25.5 8.6 45 443-487 13-58 (119)
161 2vhb_A Hemoglobin; heme, respi 33.4 2.1E+02 0.0073 23.9 10.5 44 334-377 26-72 (146)
162 1ith_A Hemoglobin (cyano Met); 33.3 49 0.0017 28.0 4.7 41 334-374 27-80 (141)
163 1x3k_A Hemoglobin component V; 33.2 96 0.0033 26.8 6.6 41 334-374 29-82 (152)
164 2ocy_A RAB guanine nucleotide 33.0 2.9E+02 0.01 25.3 12.3 14 384-397 6-19 (154)
165 2wy4_A Single domain haemoglob 32.7 2.1E+02 0.0072 23.6 11.6 43 335-377 26-71 (140)
166 1x9f_D Globin C, hemoglobin ch 32.5 94 0.0032 26.2 6.3 42 334-375 29-79 (140)
167 1jeb_A Hemoglobin zeta chain; 32.3 91 0.0031 26.3 6.2 42 334-375 27-76 (142)
168 1yhu_A Hemoglobin A1 chain; gl 32.2 81 0.0028 27.0 5.9 42 334-375 29-79 (145)
169 4dnd_A Syntaxin-10, SYN10; str 32.0 2.6E+02 0.009 24.5 9.8 23 450-472 106-128 (130)
170 3mq7_A Bone marrow stromal ant 31.9 1.7E+02 0.0059 26.1 7.9 16 380-395 28-43 (121)
171 1sfc_D Protein (SNAP-25B), pro 31.9 2.1E+02 0.0071 23.3 8.7 39 461-499 48-86 (87)
172 1x9f_C Erythrocruorin, globin 31.7 73 0.0025 27.4 5.6 58 334-398 37-103 (153)
173 3pp5_A BRK1, protein brick1; t 31.7 1.7E+02 0.0057 24.1 7.2 38 457-494 31-69 (73)
174 3ubc_A Hemoglobin-like flavopr 31.7 1.1E+02 0.0038 25.3 6.5 44 334-377 25-68 (131)
175 2dq3_A Seryl-tRNA synthetase; 31.6 34 0.0012 35.2 4.0 22 458-479 77-98 (425)
176 1m1j_A Fibrinogen alpha subuni 31.4 3.6E+02 0.012 29.0 11.5 48 434-484 106-153 (491)
177 3q8t_A Beclin-1; autophagy, AT 31.3 2.3E+02 0.0079 23.7 12.7 33 465-497 62-94 (96)
178 1gqe_A Release factor 2, RF2; 31.3 4.3E+02 0.015 27.2 11.9 15 463-477 101-115 (365)
179 1x46_A Globin chain, hemoglobi 31.2 95 0.0033 26.4 6.2 42 334-375 27-81 (150)
180 3mvc_A Globin protein 6; oxyge 31.1 2.5E+02 0.0085 24.6 9.0 44 334-377 28-79 (161)
181 3bas_A Myosin heavy chain, str 30.8 2.2E+02 0.0076 23.3 10.5 27 465-491 58-84 (89)
182 3r6n_A Desmoplakin; spectrin r 30.8 3E+02 0.01 28.6 10.9 46 395-440 98-152 (450)
183 1ash_A Hemoglobin (OXY); oxyge 30.8 2.8E+02 0.0096 24.6 9.4 44 334-377 28-84 (150)
184 3d1k_A Hemoglobin subunit alph 30.7 1.2E+02 0.0039 25.8 6.6 41 334-374 26-75 (142)
185 3qne_A Seryl-tRNA synthetase, 30.7 2.5E+02 0.0086 29.8 10.4 20 460-479 82-101 (485)
186 2aze_B Transcription factor E2 30.6 62 0.0021 27.7 4.8 57 441-501 8-67 (106)
187 1wmu_A Hemoglobin D alpha chai 30.5 1E+02 0.0034 26.1 6.2 41 334-374 26-74 (141)
188 3nr7_A DNA-binding protein H-N 30.3 1.6E+02 0.0056 24.5 7.2 10 402-411 25-34 (86)
189 3qh9_A Liprin-beta-2; coiled-c 29.5 2.5E+02 0.0086 23.5 8.2 26 431-456 43-68 (81)
190 1zww_A SH3-containing GRB2-lik 29.3 3.5E+02 0.012 25.4 10.2 36 376-411 141-176 (256)
191 1bin_A Leghemoglobin A; heme, 29.0 63 0.0021 26.9 4.5 68 334-409 27-105 (143)
192 3iyk_A VP5; icosahedral virus; 29.0 5.9E+02 0.02 27.6 13.2 52 364-417 72-130 (526)
193 4g1v_A Flavohemoglobin; three 28.2 3.6E+02 0.012 26.3 10.5 42 335-376 27-71 (399)
194 1xq5_A Hemoglobin alpha-1 chai 28.2 1.1E+02 0.0038 26.0 6.1 41 334-374 27-76 (143)
195 2r80_B Hemoglobin subunit beta 28.2 94 0.0032 26.5 5.6 41 334-374 25-79 (146)
196 2zs0_B Extracellular giant hem 28.0 97 0.0033 26.2 5.6 42 334-375 29-79 (142)
197 1lhs_A Myoglobin; oxygen stora 27.9 43 0.0015 28.9 3.4 42 334-375 26-81 (153)
198 2pnv_A Small conductance calci 27.6 71 0.0024 23.8 4.0 28 459-486 12-39 (43)
199 4h22_A Leucine-rich repeat fli 27.5 3.1E+02 0.01 23.9 9.3 31 381-417 16-46 (103)
200 1kd8_B GABH BLL, GCN4 acid bas 27.5 97 0.0033 22.6 4.5 23 442-464 8-30 (36)
201 3bas_A Myosin heavy chain, str 27.2 2.6E+02 0.0088 22.9 11.0 21 464-484 64-84 (89)
202 2zvf_A Alanyl-tRNA synthetase; 27.1 1.6E+02 0.0053 25.7 6.9 19 403-421 6-24 (171)
203 3bom_A Hemoglobin subunit alph 27.0 1.3E+02 0.0043 25.7 6.2 61 334-404 27-98 (143)
204 1r8e_A Multidrug-efflux transp 27.0 1.4E+02 0.0048 27.5 6.9 26 379-405 43-68 (278)
205 1u4q_A Spectrin alpha chain, b 27.0 3.8E+02 0.013 24.7 12.6 137 334-475 141-320 (322)
206 2eqb_B RAB guanine nucleotide 26.9 3E+02 0.01 23.6 8.4 12 403-414 7-18 (97)
207 1gs9_A Apolipoprotein E, APOE4 26.9 3.6E+02 0.012 24.4 9.8 30 467-496 132-162 (165)
208 3d1k_B Hemoglobin subunit beta 26.8 97 0.0033 26.6 5.4 41 334-374 25-79 (146)
209 3o0z_A RHO-associated protein 26.7 3.9E+02 0.014 24.9 12.5 69 418-486 52-127 (168)
210 3u06_A Protein claret segregat 26.4 97 0.0033 31.9 6.2 14 404-417 6-19 (412)
211 3bom_B Hemoglobin subunit beta 26.3 1.1E+02 0.0039 26.2 5.8 40 334-373 25-78 (147)
212 4dvy_P Cytotoxicity-associated 26.3 3.2E+02 0.011 30.3 10.3 76 383-459 714-800 (876)
213 3r2p_A Apolipoprotein A-I; amp 26.1 2.8E+02 0.0096 25.0 8.6 9 369-377 30-38 (185)
214 4e81_A Chaperone protein DNAK; 25.9 4.1E+02 0.014 24.8 10.7 18 380-397 118-135 (219)
215 1gd2_E Transcription factor PA 25.7 1.2E+02 0.004 24.5 5.3 11 441-451 31-41 (70)
216 2zs0_D Extracellular giant hem 25.5 2.9E+02 0.0098 23.8 8.3 59 334-399 33-98 (145)
217 3lay_A Zinc resistance-associa 25.3 2.2E+02 0.0075 26.3 7.8 16 462-477 112-127 (175)
218 2w72_C Human hemoglobin A; iro 25.2 88 0.003 26.4 4.8 41 334-374 26-74 (141)
219 3he5_A Synzip1; heterodimeric 25.1 2.2E+02 0.0074 21.5 6.2 16 451-466 33-48 (49)
220 1x79_B RAB GTPase binding effe 25.1 3.5E+02 0.012 23.7 9.1 26 464-489 46-71 (112)
221 1out_B Hemoglobin I; heme, oxy 25.0 98 0.0034 26.6 5.2 53 334-396 25-91 (146)
222 2l7b_A Apolipoprotein E, APO-E 25.0 49 0.0017 33.0 3.6 93 403-495 45-158 (307)
223 3ci9_A Heat shock factor-bindi 25.0 1.3E+02 0.0044 22.9 5.1 24 454-477 21-45 (48)
224 2kho_A Heat shock protein 70; 25.0 3.4E+02 0.012 28.7 10.2 19 379-397 505-523 (605)
225 3c9i_A Tail needle protein GP2 24.8 5E+02 0.017 25.4 13.0 62 433-494 82-143 (242)
226 3uun_A Dystrophin; triple heli 24.6 2.5E+02 0.0087 21.9 11.9 32 386-417 18-49 (119)
227 1dip_A Delta-sleep-inducing pe 24.1 44 0.0015 27.8 2.6 29 457-485 16-44 (78)
228 1a6m_A Myoglobin; heme protein 24.0 3.4E+02 0.012 23.2 11.0 42 334-375 26-81 (151)
229 1gvh_A Flavohemoprotein; oxido 23.9 3.4E+02 0.012 26.4 9.3 44 334-377 26-72 (396)
230 1fxk_C Protein (prefoldin); ar 23.6 2.3E+02 0.008 23.9 7.2 16 383-398 31-46 (133)
231 2xzr_A Immunoglobulin-binding 23.4 3.7E+02 0.013 23.5 9.5 60 429-488 49-108 (114)
232 3fpp_A Macrolide-specific effl 23.3 2.6E+02 0.0087 26.5 8.2 20 486-505 144-163 (341)
233 1go4_E MAD1 (mitotic arrest de 23.3 99 0.0034 26.7 4.7 31 465-495 14-44 (100)
234 3lof_A Heat shock 70 kDa prote 23.0 3.1E+02 0.011 22.4 8.7 24 379-408 32-55 (113)
235 3vbb_A Seryl-tRNA synthetase, 23.0 2.5E+02 0.0086 30.1 8.8 31 468-498 110-140 (522)
236 1u00_A HSC66, chaperone protei 23.0 4.6E+02 0.016 24.3 10.5 19 380-398 115-133 (227)
237 1spg_A Hemoglobin; carbon mono 22.9 2.1E+02 0.0072 24.4 6.8 54 334-397 27-90 (144)
238 1l4a_D S-SNAP25 fusion protein 22.9 2.5E+02 0.0086 23.0 7.0 38 461-498 49-86 (87)
239 4b4t_P 26S proteasome regulato 22.8 3.8E+02 0.013 27.1 9.8 41 378-418 24-67 (445)
240 2jyp_A Aragonite protein AP7; 22.8 17 0.00057 26.0 -0.1 7 74-80 7-13 (36)
241 3ilw_A DNA gyrase subunit A; D 22.6 5E+02 0.017 27.7 10.8 19 164-182 136-154 (470)
242 4b9q_A Chaperone protein DNAK; 22.6 4.1E+02 0.014 28.0 10.3 19 379-397 505-523 (605)
243 1ud0_A HSC70, 70 kDa heat-shoc 22.5 3.1E+02 0.011 22.3 8.7 23 379-407 27-49 (113)
244 3ryc_E Stathmin-4; alpha-tubul 22.2 4.5E+02 0.015 24.0 12.1 34 449-482 97-131 (143)
245 1v4x_B Hemoglobin beta chain; 22.2 1E+02 0.0035 26.4 4.7 40 334-373 25-78 (146)
246 1cg5_A Protein (hemoglobin); o 22.1 1.3E+02 0.0044 25.6 5.3 40 334-373 26-74 (141)
247 2oif_A Horvu GLB1, non-legume 22.0 3.6E+02 0.012 22.8 10.9 67 334-408 34-117 (162)
248 2r80_A Hemoglobin subunit alph 21.8 2E+02 0.0068 24.4 6.4 40 334-373 26-73 (141)
249 4e61_A Protein BIM1; EB1-like 21.8 1.6E+02 0.0054 25.7 5.7 36 444-479 6-41 (106)
250 2a3d_A Protein (de novo three- 21.8 94 0.0032 25.0 3.9 41 459-499 5-48 (73)
251 2aa1_B Hemoglobin beta-C chain 21.5 1.2E+02 0.004 26.1 4.9 40 334-373 25-78 (146)
252 1ud0_A HSC70, 70 kDa heat-shoc 21.4 2.7E+02 0.0092 22.7 7.0 18 465-482 56-73 (113)
253 1g6u_A Domain swapped dimer; d 21.1 87 0.003 23.5 3.4 25 471-495 21-45 (48)
254 4etp_B Spindle POLE BODY-assoc 21.0 2.4E+02 0.0081 29.0 7.7 53 438-497 13-65 (333)
255 1r8d_A Transcription activator 20.9 3.4E+02 0.012 22.1 8.1 25 379-404 39-63 (109)
256 2ovc_A Potassium voltage-gated 20.8 91 0.0031 22.2 3.3 23 467-489 7-29 (33)
257 2eqb_B RAB guanine nucleotide 20.6 4.1E+02 0.014 22.8 11.6 20 434-453 42-61 (97)
258 3s4r_A Vimentin; alpha-helix, 20.5 3.7E+02 0.013 22.3 8.4 35 462-496 55-89 (93)
259 1gcv_B Hemoglobin; oxygen stor 20.4 1.7E+02 0.0059 25.0 5.8 41 334-374 25-69 (136)
260 3g46_A Globin-1; oxygen transp 20.4 4E+02 0.014 22.6 10.5 42 334-375 34-86 (146)
261 4hrt_A Globin-2 A chain; oxyge 20.3 2E+02 0.0068 24.7 6.2 42 334-375 35-87 (150)
262 2akf_A Coronin-1A; coiled coil 20.2 1E+02 0.0036 21.6 3.4 23 455-477 5-27 (32)
263 1cqx_A Flavohemoprotein; globi 20.2 1.5E+02 0.0052 28.9 6.0 42 334-375 26-70 (403)
264 1g8x_A Myosin II heavy chain f 20.1 2.1E+02 0.0072 32.8 7.9 84 322-413 687-789 (1010)
265 3a6m_A Protein GRPE, HSP-70 co 20.1 3.6 0.00012 38.2 -5.2 49 458-506 28-76 (177)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.08 E-value=0.71 Score=47.54 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 436 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 436 ~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
.....+++++++.+++...++++.+++.+++++++++.+|..+.+.+.+-+..+..|+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555666666677777777788888888888777777655444444443
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.91 E-value=1.3 Score=50.81 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 433 CVNLLESTKKELESQMNELALKEKEVAGLKESV----AKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv----~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
.+..+..+.+|+++.-+++....+|.++..++. .++.+.+..|+.+...|.+.+.++.+.+.+
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433333 245577777888888888888887765443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.85 E-value=2.6 Score=37.02 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 010595 464 SVAKTKARLSDLELESNRL 482 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L 482 (506)
++..+..++..++.+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 84 DVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.28 E-value=3.2 Score=37.23 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=25.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010595 425 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 476 (506)
Q Consensus 425 ~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE 476 (506)
.++.+.+..++.+..++.++.+...++....+++.++++++.++..++++||
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445555554444555555555555555555555555554
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.07 E-value=5.6 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhcchhhhcc
Q 010595 360 AYYLECLCSVVQELQSTSLMQMT 382 (506)
Q Consensus 360 s~YMn~LlsLIetL~ksplqeLS 382 (506)
+.||+.|-.-...|.+.- ++|.
T Consensus 1895 ~syLeli~~y~~ll~~K~-~el~ 1916 (3245)
T 3vkg_A 1895 RHYLDFINQVVLLINEKR-DQLE 1916 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH
Confidence 347766666555555544 4443
No 6
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.33 E-value=3.5 Score=41.59 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=35.0
Q ss_pred cCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010595 399 AQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 478 (506)
Q Consensus 399 aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~e 478 (506)
+.=...||+++|+|+...- .+++.+-..|-+.+-++..-||.+ .+|-++.|++...+|++....|.+++.+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhH------HHHHHHhhhcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567777777665444 334444344445555544444432 4444444444444444444444444443
Q ss_pred h
Q 010595 479 S 479 (506)
Q Consensus 479 s 479 (506)
.
T Consensus 466 ~ 466 (471)
T 3mq9_A 466 V 466 (471)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.19 E-value=4.3 Score=36.38 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=44.2
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 419 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 419 ~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
+++.+-.+..+-+..+..++.+.+|+...-++|....-+...+...+.+.+.++..|+.+..+|+..+.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555566666666677766666667766666666667777777777777777777665443
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.97 E-value=3.2 Score=39.63 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
+....+++...+.++..+.+++.++......+...+..++.++
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443333
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.70 E-value=9 Score=36.51 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 010595 450 ELALKEKEVAGLKESVAKTKARL 472 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL 472 (506)
.+..+++++.+...++.+.+++|
T Consensus 119 ~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 119 EIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 10
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=87.69 E-value=3 Score=44.18 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=16.8
Q ss_pred EEeccEEeecchHHHH-HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHh
Q 010595 322 VSVGKYHVRASISSIL-QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ 374 (506)
Q Consensus 322 VdVnGFqVlpSqv~iV-~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ 374 (506)
|+-+||+++|..+..- ++=.+.+.--|-+|+.-++.|=+++=. =|.|.++|.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPT-tC~l~D~L~ 92 (464)
T 1m1j_B 40 ISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPT-GCELQTTLL 92 (464)
T ss_dssp -----------------------CCCCCSCEECSSTTTCEEEEC-TTHHHHHHH
T ss_pred cCCCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCC-ccHHHHHHH
Confidence 6679999999887775 444455555577777666555443322 266666664
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.54 E-value=9.7 Score=33.03 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=5.5
Q ss_pred hcCcchhhhhhHHH
Q 010595 398 SAQIDVDWLRNILN 411 (506)
Q Consensus 398 ~aGfKVDWL~kKLe 411 (506)
++.--++.++.|++
T Consensus 45 n~~~~~edfk~KyE 58 (119)
T 3ol1_A 45 NLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH
Confidence 33333344444443
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.74 E-value=9.3 Score=32.30 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=4.8
Q ss_pred HHHHHHHhhhhHH
Q 010595 471 RLSDLELESNRLE 483 (506)
Q Consensus 471 RL~~LE~ess~L~ 483 (506)
++..+|.+...|.
T Consensus 80 ~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 80 NAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 13
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.56 E-value=7.4 Score=31.52 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=40.4
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 423 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 423 ~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
.++++.++++.....+.+..+++..-+.+.+.+.++ ..+.-|+..||.+..+....+..+..|++..
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev-------~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDEL-------VALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666655555555555555544444444444 4466667777777777777777777766543
No 14
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=83.59 E-value=22 Score=31.08 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
+.+...++.++..++.+...+|..++.....+...+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 135 (284)
T 1c1g_A 99 LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333334444444444444444433333333
No 15
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=82.54 E-value=10 Score=40.17 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=25.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 457 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
++.++++++.+++++|..|+.+...++..+..+=..+=+.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3344566777777777777777777766665554444444
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.39 E-value=3 Score=47.86 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=4.0
Q ss_pred hhHHHhhhh
Q 010595 79 CGERCFKRN 87 (506)
Q Consensus 79 C~e~C~~~i 87 (506)
|-.||..++
T Consensus 453 cINy~NEkL 461 (1080)
T 2dfs_A 453 CINYANEKL 461 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhHHH
Confidence 444444444
No 17
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.14 E-value=21 Score=31.94 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=50.9
Q ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595 405 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 405 WL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k 484 (506)
-|+..|....+.- ...+.+-..|-+.+..++.-|+++ -++.++.+++++..|..+...|.+++++..+|..
T Consensus 29 lLq~qLTqAQe~l------~~~eaQAaTCNqTV~tL~~SL~~e---kaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 29 LLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555444322 233444456777777777666654 4455677888888888888888888888888766
Q ss_pred HHHHhhhh
Q 010595 485 IIQATQSK 492 (506)
Q Consensus 485 ~v~~~kSK 492 (506)
-...+...
T Consensus 100 ~~~~~~~r 107 (121)
T 3mq7_A 100 ENQVLSVR 107 (121)
T ss_dssp HHHHHHHH
T ss_pred hchhhhhH
Confidence 55555443
No 18
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.05 E-value=2.8 Score=43.02 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 439 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 439 ~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
.++.+|+...+++.+.++++++++.++.++.++|.+.+.++.+|.-.+.++|.+|+=|
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3445555555566666777777777888899999999999999999999999887655
No 19
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=81.57 E-value=5.3 Score=42.39 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 460 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
++++++.+++++|.+||.+...++..+..+=..+=+.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3556667777777777777777766665555444444
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.33 E-value=11 Score=40.86 Aligned_cols=77 Identities=10% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 010595 366 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE 445 (506)
Q Consensus 366 LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELE 445 (506)
|...|++|.+.- .+| ..-=.+++.....+. +=|+.+|....+....+.++.. .+++.+..++.+|.
T Consensus 62 ltkrINELKnqL-Edl-sKnsKdseqy~k~~~------E~Lr~rq~q~~dNdNtynE~S~------ELRRrIqyLKekVd 127 (562)
T 3ghg_A 62 FTNRINKLKNSL-FEY-QKNNKDSHSLTTNIM------EILRGDFSSANNRDNTYNRVSE------DLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHH-THH-HHHHHHHHHHHHHHH------HTTSSHHHHHHHHHHHHHHTTH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH-HhhchhHHHHHHHHH------HHHHHHHHhhhccchhHHHHHH------HHHHHHHHHHHHHH
Confidence 344455554443 444 222334444443333 5566666666555443333331 23344444444444
Q ss_pred HHHHHHHHHHH
Q 010595 446 SQMNELALKEK 456 (506)
Q Consensus 446 e~leeL~qKeK 456 (506)
.++..|+.++.
T Consensus 128 nQlsnIrvLQs 138 (562)
T 3ghg_A 128 EKVQHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44433333333
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.56 E-value=5.2 Score=43.24 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=5.0
Q ss_pred hhHHHHHHHHH
Q 010595 407 RNILNEISEAI 417 (506)
Q Consensus 407 ~kKLeEV~Ear 417 (506)
+..|+++...+
T Consensus 70 KnqLEdlsKns 80 (562)
T 3ghg_A 70 KNSLFEYQKNN 80 (562)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 34455554333
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.83 E-value=22 Score=29.75 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 460 GLKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
++..++.+...++..+|.+..-|..+|
T Consensus 69 ~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 69 EAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444
No 23
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=79.70 E-value=18 Score=35.05 Aligned_cols=60 Identities=5% Similarity=-0.036 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 436 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 436 ~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
..++..++.|+.++++.+++.+..+++.++.+++..+.+.+.+.....+.+..|.-+|.+
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~ 201 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSK 201 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 344555566666777777777777777777777777777776666555566666666654
No 24
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=79.43 E-value=9.6 Score=39.67 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 438 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 438 e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
+.+.+...+|++++.+.|..+....++|..++..|..++.+...|.+.|..+..++..
T Consensus 80 e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 80 EQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 3445566667777777777777777777778887777776667776666666665543
No 25
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=78.38 E-value=24 Score=28.19 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=3.1
Q ss_pred hhhhhH
Q 010595 404 DWLRNI 409 (506)
Q Consensus 404 DWL~kK 409 (506)
+||..+
T Consensus 16 ~WL~e~ 21 (118)
T 3uul_A 16 TWLLSA 21 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566543
No 26
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=77.99 E-value=8.3 Score=44.27 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=7.5
Q ss_pred ccEEeecchHHHHH
Q 010595 325 GKYHVRASISSILQ 338 (506)
Q Consensus 325 nGFqVlpSqv~iV~ 338 (506)
.||.++..+.++++
T Consensus 718 ~Gfp~R~~~~~F~~ 731 (1184)
T 1i84_S 718 QGFPNRIVFQEFRQ 731 (1184)
T ss_dssp HSCCEEEEHHHHHH
T ss_pred hcCcccccHHHHHH
Confidence 45555555555444
No 27
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=77.81 E-value=30 Score=30.31 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=20.0
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~k 408 (506)
+-.+.+||..+ ..+..|.+.||-|+=.+.
T Consensus 39 R~Y~~~dl~~l-~~I~~lr~~G~sL~eIk~ 67 (142)
T 3gp4_A 39 RKFGAEDLRWI-LFTRQMRRAGLSIEALID 67 (142)
T ss_dssp BCBCHHHHHHH-HHHHHHHHTTCCHHHHHH
T ss_pred eeeCHHHHHHH-HHHHHHHHcCCCHHHHHH
Confidence 56788888865 455667899997654433
No 28
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.54 E-value=23 Score=30.93 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=48.2
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 418 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 418 e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
+-+-..++|+.+|.+..=.+..+|..||++-+.+++...+..+.... +.++......|...+..++..++
T Consensus 13 KAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re-------~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 13 KAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE-------FEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567789999999988899999999999888888888777773222 33334444445455555555544
No 29
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=76.39 E-value=21 Score=29.72 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010595 434 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 476 (506)
Q Consensus 434 e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE 476 (506)
...+...+++|+.++..|.+.+.++.. -|.-++++..+|+
T Consensus 34 ~~EL~~G~~KL~~mi~~l~~E~~~l~~---ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 34 EEDLKKGHQKLEEMVTRLDQEVAEVDK---NIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344555677788887777766655555 5555566555554
No 30
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=76.39 E-value=27 Score=27.75 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=8.8
Q ss_pred HHHHHHHHhhHHhcCcchhhhhhH
Q 010595 386 VKEMMAVLKDVESAQIDVDWLRNI 409 (506)
Q Consensus 386 L~ea~~~L~dLe~aGfKVDWL~kK 409 (506)
|..-...|.+|. +||..+
T Consensus 4 L~~F~~~l~el~------~WL~~~ 21 (119)
T 3uun_A 4 LDRYQTALEEVL------SWLLSA 21 (119)
T ss_dssp HHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHH
Confidence 333444455554 666544
No 31
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.15 E-value=32 Score=28.43 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010595 406 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 485 (506)
Q Consensus 406 L~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~ 485 (506)
|+.+++.+.-.+ +.++.+.+|....++..+.+.|.++.-=...|.++.-++.-+-+.---=+.||.+..-|..-
T Consensus 5 Lr~qi~~l~~e~------~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 5 LRRQVDQLTNDK------ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655444 45666777777777777777777655444445555444444444433334555555555555
Q ss_pred HHHhh
Q 010595 486 IQATQ 490 (506)
Q Consensus 486 v~~~k 490 (506)
|.++|
T Consensus 79 l~fLk 83 (86)
T 3swk_A 79 IAFLK 83 (86)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
No 32
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=76.06 E-value=40 Score=30.32 Aligned_cols=73 Identities=8% Similarity=0.125 Sum_probs=41.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH---HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 426 IDAAKANCVNLLESTKKELESQMNELALK-EKEVAGLKESV---AKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 426 leeeKd~~e~~~e~~kkELEe~leeL~qK-eKEv~d~~eRv---~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
+.+++...+.+++..+++.+...++..++ +++....++|+ ..+..|+..|.....=+...+..++.++..|.+
T Consensus 19 ~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~~~~ 95 (187)
T 3v6i_A 19 LQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREALEALPQ 95 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 33444445566666666655554433222 23333322232 255667777777766777777778888777754
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.89 E-value=13 Score=38.15 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
.++++.+++.++.+.+....++.+-+..++.++.+++.
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666555543
No 34
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=75.69 E-value=26 Score=36.53 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 460 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
++++++.+++++|.+|+.+...++..+..+=..+=+..
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34566667777777777777777666665555554443
No 35
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=74.29 E-value=50 Score=29.80 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
|+..+.+.....+|......++.+|+.+...+..++.++...-++
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eek 126 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEE 126 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 344444444455666666666777776666666666665544433
No 36
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=73.33 E-value=41 Score=29.70 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=16.5
Q ss_pred chHHHHHHHHhhcccccccCcc
Q 010595 332 SISSILQSIISRYGDIAANCNL 353 (506)
Q Consensus 332 Sqv~iV~~IFeKHpDIAsnf~l 353 (506)
.-...|+.++.||-.+-.++..
T Consensus 33 ~dl~~v~~ll~kh~~le~~i~~ 54 (216)
T 1u5p_A 33 KDLASVNNLLKKHQLLEADISA 54 (216)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999877666543
No 37
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=72.47 E-value=16 Score=37.55 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 460 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
++++++.+++++|.+|+.+...++..+..+-..+=+.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455566666666666666666666555444444333
No 38
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=71.86 E-value=17 Score=41.80 Aligned_cols=10 Identities=10% Similarity=0.082 Sum_probs=4.9
Q ss_pred hhHHHhhhhc
Q 010595 79 CGERCFKRNG 88 (506)
Q Consensus 79 C~e~C~~~i~ 88 (506)
|-.||..++.
T Consensus 480 ciNy~nEkLq 489 (1184)
T 1i84_S 480 CINYTNEKLQ 489 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.63 E-value=56 Score=30.19 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=45.6
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 423 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 423 ~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
...+..+....+..+..+..+|+++-+.+.....|+.-++-+...+.++|..|+.+...|=++..
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666677777777777777777777777888888888888888877755543
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.19 E-value=63 Score=30.61 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=14.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 452 ALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 452 ~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
..+++++..++.....++.+|..||...-+|
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3334444444444444555555555444444
No 41
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=71.18 E-value=5.7 Score=38.14 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
++...+.++.+++.++.++++++-++..+..++.++..-=+....+|...+|+-+||
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LL 116 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLL 116 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666677888889999999999998888888888888888888887765
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.43 E-value=47 Score=27.80 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHHH
Q 010595 405 WLRNILNEISEAI 417 (506)
Q Consensus 405 WL~kKLeEV~Ear 417 (506)
=|+.|+....+.+
T Consensus 10 qLE~KIq~avdtI 22 (81)
T 2jee_A 10 KLEAKVQQAIDTI 22 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444544444444
No 43
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=70.19 E-value=25 Score=38.00 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 435 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 435 ~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
+-++.+++++|+-..||.+.+|.++..++|+...-.=+..+.++.-.+.++|.++.-=+++|.
T Consensus 314 hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 314 HPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 334555666666666777778888887777777767777777777778888888887777775
No 44
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.01 E-value=48 Score=27.74 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=20.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 492 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSK 492 (506)
+.++.+++.+|.+...-=++|+.+...|...+..+|.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555555555555555
No 45
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=68.55 E-value=25 Score=33.12 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHH----HHHHHhhhhHHHHHH
Q 010595 436 LLESTKKELESQMNELALKEKEVAGLKESV----------AKTKARL----SDLELESNRLEQIIQ 487 (506)
Q Consensus 436 ~~e~~kkELEe~leeL~qKeKEv~d~~eRv----------~e~k~RL----~~LE~ess~L~k~v~ 487 (506)
.++..++.++++++++.+.+.+...-..+. ..+..|| .+.|.++..|.+.+.
T Consensus 87 ~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 87 DLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455556666666555555553321111 1224444 455666766655443
No 46
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=68.37 E-value=48 Score=35.15 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=20.9
Q ss_pred HHH-HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 462 KES-VAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 462 ~eR-v~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
.++ +.+++++|.+|+.+...++..+..+=..+-+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444 55666777777766666666665554444444
No 47
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=68.21 E-value=71 Score=29.01 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=7.7
Q ss_pred HHHHHHHHHhcch
Q 010595 365 CLCSVVQELQSTS 377 (506)
Q Consensus 365 ~LlsLIetL~ksp 377 (506)
-|+.+++.|++++
T Consensus 26 elik~L~~le~sa 38 (152)
T 4fla_A 26 ELIKALQDLENAA 38 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc
Confidence 4555666666655
No 48
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.08 E-value=12 Score=38.65 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=32.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 454 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 454 KeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
.+.++++..+.+.+++++|.+.++++-+|.-.|.+++-.|+=|
T Consensus 22 l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 22 LLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3344444445777788889999999999999999998877644
No 49
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.74 E-value=19 Score=29.94 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=27.6
Q ss_pred HHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 010595 414 SEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN 480 (506)
Q Consensus 414 ~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess 480 (506)
.|..+++.-.-.+...|+++-..++++--|-+....||...++.. ..++.|+.+||.+..
T Consensus 16 ~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~-------~r~~~ri~elEeElk 75 (77)
T 2w83_C 16 LENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK-------LKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 456666666677777777665555555444333333333333333 335556666665543
No 50
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=66.89 E-value=19 Score=32.80 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=14.8
Q ss_pred HHHHHHHHH-HHhhhhHHHHHHHhhhhh
Q 010595 467 KTKARLSDL-ELESNRLEQIIQATQSKV 493 (506)
Q Consensus 467 e~k~RL~~L-E~ess~L~k~v~~~kSKV 493 (506)
+++.+|.-+ +...++|.+++..+|..+
T Consensus 137 ~Lr~~L~p~~e~lr~~l~~~~e~lk~~l 164 (185)
T 3r2p_A 137 ELQEKLSPLGEEMRDRARAHVDALRTHL 164 (185)
T ss_dssp TTTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444332 455666666666666654
No 51
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=66.08 E-value=31 Score=35.46 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
+++++.+++++|.+|+.+...++..+..+-..+=+..
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 109 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLP 109 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4567777788888888887777777666555554443
No 52
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=65.07 E-value=15 Score=39.16 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=57.8
Q ss_pred EEeccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCc
Q 010595 322 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQI 401 (506)
Q Consensus 322 VdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGf 401 (506)
|+-+||+.+|..+.....-.++-+==|-+|+.-++.|=+++ =.=|.|-.+|.+.- .. -+.+|.++...|..|+
T Consensus 36 ~s~~~y~~~~~~~~~~~~~~~~~~pd~g~c~~~~~~fG~yC-PTtCglad~L~kye-~~-V~~dl~~Le~~l~~is---- 108 (461)
T 3ghg_B 36 ISGGGYRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLC-PTGCQLQEALLQQE-RP-IRNSVDELNNNVEAVS---- 108 (461)
T ss_dssp ----------------------CCCCCCCCBCSSTTTCBCE-ECHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHH----
T ss_pred CCCCCcCCCCCCCccccccccccCCCCCCccccCcccCCcC-CCcchHHHHHHhcc-cc-hhhHHHHHHHHHHHHH----
Confidence 45589999999888777777666555888888888876543 23356666664332 11 1223333333332222
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhh
Q 010595 402 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG--LKESVAKTKARLSDLELES 479 (506)
Q Consensus 402 KVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d--~~eRv~e~k~RL~~LE~es 479 (506)
+.=.++.+.+..++..-. +.+......+.+.++-..||++.-.-++++.+ .-..|..+..-|..+..+.
T Consensus 109 ------n~Ts~a~~~v~~ik~s~~---~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i 179 (461)
T 3ghg_B 109 ------QTSSSSFQYMYLLKDLWQ---KRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKI 179 (461)
T ss_dssp ------HHHHHHHTHHHHHHHHHH---HHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHhc---cccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Confidence 222222333332221111 11101111133333344455555555555444 3445555555555555555
Q ss_pred hhHHHHHHHhh
Q 010595 480 NRLEQIIQATQ 490 (506)
Q Consensus 480 s~L~k~v~~~k 490 (506)
.+|++.|..+.
T Consensus 180 ~~l~~~~~~~~ 190 (461)
T 3ghg_B 180 QKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 55555554443
No 53
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=65.02 E-value=81 Score=28.53 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=45.4
Q ss_pred hHHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHH-
Q 010595 333 ISSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE- 397 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe- 397 (506)
-..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|.... .|..+...|...=
T Consensus 45 g~~~y~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~Ldd~~-------~l~~~l~~L~~~H~ 117 (193)
T 2dc3_A 45 GVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPD-------KVSSVLALVGKAHA 117 (193)
T ss_dssp HHHHHHHHHHHCGGGGGGCTTTTTCCCHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHhccCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHH
Confidence 357899999999999888864 5666655 57888888887775322 4566666666544
Q ss_pred -hcCcchhhh
Q 010595 398 -SAQIDVDWL 406 (506)
Q Consensus 398 -~aGfKVDWL 406 (506)
..||+-+-.
T Consensus 118 ~~~gV~p~~f 127 (193)
T 2dc3_A 118 LKHKVEPVYF 127 (193)
T ss_dssp HTSCCCHHHH
T ss_pred HHcCCCHHHH
Confidence 346655443
No 54
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=64.60 E-value=54 Score=29.38 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcccccccCc----------ccchhHH---HHHHHHHHHHHHHHhcch
Q 010595 334 SSILQSIISRYGDIAANCN----------LESNSMR---AYYLECLCSVVQELQSTS 377 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~----------lKn~~lR---s~YMn~LlsLIetL~ksp 377 (506)
..+..++|+.|||+..=|. .+|+.|+ ...|..|..+|..|....
T Consensus 32 ~~fy~~LF~~~Pe~r~lF~~~~~v~~~d~~~s~~f~~q~~rl~~aL~~~v~~lDd~~ 88 (159)
T 2wtg_A 32 NAFYRYFFTNFPDLRVYFKGAEKYTADDVKKSERFDKQGQRILLACHLLANVYTNEE 88 (159)
T ss_dssp HHHHHHHHHHCGGGGGGSTTCTTCCHHHHHTCHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHChhHHHHccCcccCCHHhhhcCHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4678999999999999998 5577664 567777888888776544
No 55
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.32 E-value=37 Score=29.38 Aligned_cols=14 Identities=14% Similarity=0.563 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 010595 404 DWLRNILNEISEAI 417 (506)
Q Consensus 404 DWL~kKLeEV~Ear 417 (506)
.|-+.|++++....
T Consensus 11 ~~y~~K~eel~~~~ 24 (129)
T 3tnu_B 11 SWYQTKYEELQQTA 24 (129)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 47777877776444
No 56
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=64.22 E-value=51 Score=28.98 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=33.4
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 458 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv 458 (506)
.+|.+ +|..+...-.+|++. |.+++=+=..+--.+..+.+..+.............+..+.++|..|..-.+.|
T Consensus 16 ~ql~~-qL~k~~~~r~~Le~~-----w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V 89 (112)
T 1x79_B 16 RQAND-QLEKTMKDKQELEDF-----IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHH-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433 666666666666654 555443322222223333333333333333333333444444444444444444
Q ss_pred Hh
Q 010595 459 AG 460 (506)
Q Consensus 459 ~d 460 (506)
++
T Consensus 90 ~~ 91 (112)
T 1x79_B 90 SE 91 (112)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 57
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=64.10 E-value=91 Score=28.82 Aligned_cols=15 Identities=7% Similarity=-0.038 Sum_probs=7.3
Q ss_pred ecchHHHHHHHHhhc
Q 010595 330 RASISSILQSIISRY 344 (506)
Q Consensus 330 lpSqv~iV~~IFeKH 344 (506)
.+|+.+-|+..|.-|
T Consensus 22 ~~s~~e~v~~~~~~y 36 (191)
T 1nfn_A 22 SGQRWELALGRFWDY 36 (191)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 445555555555433
No 58
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=63.20 E-value=75 Score=29.71 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=36.4
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH----HH
Q 010595 418 EFSTQHQTIDAAKANCVNLLESTKKELESQMN-------ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ----II 486 (506)
Q Consensus 418 e~~~~~~~leeeKd~~e~~~e~~kkELEe~le-------eL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k----~v 486 (506)
+++.-+..++.++.++.+ +.....+|+..+. .+...+..+.. .-...-+||..||.+.+.++. -+
T Consensus 70 e~~~LQa~L~qEr~~r~q-~se~~~elq~ri~~L~~El~~~k~~~~k~~~---e~r~L~Ekl~~lEKe~a~~eid~~~eL 145 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGH-DSEMIGDLQARITSLQEEVKHLKHNLEKVEG---ERKEAQDMLNHSEKEKNNLEIDLNYKL 145 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 445556666666654332 2333333333333 33333333332 233456677777777776652 24
Q ss_pred HHhhhhhhhc
Q 010595 487 QATQSKVTKF 496 (506)
Q Consensus 487 ~~~kSKV~kF 496 (506)
..++.+.++.
T Consensus 146 KalQ~~~eqE 155 (168)
T 3o0z_A 146 KSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 59
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.06 E-value=26 Score=28.82 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 437 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 437 ~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
+..++..|++..++|.+++..+++ ...+|.+.+.+ |..|++.++||.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~e-------LEk~L~ekd~e-------I~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDE-------LELELDQKDEL-------IQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHhh
Confidence 444444455555555555444333 44555544444 444777777774
No 60
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=62.66 E-value=16 Score=37.04 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 466 AKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 466 ~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
..+++.|..++....+|.+.|..+..
T Consensus 29 ~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 29 QELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 61
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=62.27 E-value=38 Score=30.08 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010595 471 RLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 471 RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 505 (506)
.|.++|.+...-.+.+..+..|| |.+++|+|.|
T Consensus 80 ~lqe~ese~~~kkK~le~~~~kV--~mNk~LAe~F 112 (115)
T 3vem_A 80 KFHEVEAEHNTRTTKIEKDKNLV--IMNKLLANAF 112 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 46777888888888888888888 5567777765
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.09 E-value=60 Score=32.74 Aligned_cols=36 Identities=3% Similarity=0.015 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 458 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
++..++++..++++=.+++.+..++.+.+..++-++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 333444566666655556666666655555555443
No 63
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=61.61 E-value=20 Score=26.85 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=26.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 453 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 453 qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
..|..+++...+..+..+|++-|+.|..-|-|++.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34555566666888899999999999888877653
No 64
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=61.49 E-value=81 Score=27.35 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
+..+.++.+|+.+..++...|...-.+|...+..++..++-.
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777777777777777777777777777665543
No 65
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.30 E-value=1e+02 Score=28.39 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 434 VNLLESTKKELESQMNELALK------------EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 434 e~~~e~~kkELEe~leeL~qK------------eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
+...+..+..|+.+|++|..- ..+-..+..|+..++.+|.+.+.-...+..-|..||.=|.+.
T Consensus 74 R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 74 RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555566666655321 112222233444445555555555555555555555544443
No 66
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=61.09 E-value=53 Score=27.87 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=14.2
Q ss_pred HHHHhcchhhhccHHHHHHHHHHHhhHH
Q 010595 370 VQELQSTSLMQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 370 IetL~ksplqeLS~~dL~ea~~~L~dLe 397 (506)
|.+|+... ..||.+++..+-..=.-|+
T Consensus 8 VreLN~~L-~gls~eev~~lKq~RRtlK 34 (90)
T 2wt7_B 8 VRELNRHL-RGFTKDEVIRLKQKRRTLK 34 (90)
T ss_dssp HHHHHTTC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhhh
Confidence 34455544 6666666655544444433
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.04 E-value=52 Score=34.36 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHH
Q 010595 404 DWLRNILNEISEAI 417 (506)
Q Consensus 404 DWL~kKLeEV~Ear 417 (506)
+-|+.+|..+...-
T Consensus 95 ~~lk~~~~q~~dnd 108 (390)
T 1deq_A 95 ELMRGDFAKANNND 108 (390)
T ss_pred HHHHHHHHhhccch
Confidence 44555555554443
No 68
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.99 E-value=83 Score=27.30 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
+.+|+..+.+|.....+..+ +..++...-..|+.+...|.+-|.++
T Consensus 78 k~eLe~~l~el~~rleeeee---~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEE---MNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444333 33344444444455555555544444
No 69
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.62 E-value=24 Score=28.96 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 010595 441 KKELESQMNELALKEKEVAGLKES 464 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eR 464 (506)
..-|++..++|.+++.++.+++..
T Consensus 39 d~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555566666666664443
No 70
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=59.68 E-value=38 Score=35.45 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 442 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 442 kELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
+.-.+||+|..+.+.-+......|.++++-|.........|.+.|..+..++.
T Consensus 84 q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 84 LKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334555555555555554555555655555555555555555555555553
No 71
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=59.12 E-value=49 Score=32.33 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHH-HHhhhhHHHHHHHhhhhhhhcc
Q 010595 448 MNELALKEKEVAG-LKESVAKTKARLSDL-ELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 448 leeL~qKeKEv~d-~~eRv~e~k~RL~~L-E~ess~L~k~v~~~kSKV~kF~ 497 (506)
+++|..+..+... ++.++++.+.+|.-+ ++....|.+.+..++-||.-|.
T Consensus 200 ~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l~~~~ 251 (273)
T 3s84_A 200 TEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHA 251 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhCcch
Confidence 3444444444444 567777888887644 4566667777788888887664
No 72
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.37 E-value=17 Score=27.18 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 010595 450 ELALKEKEVAGLKESVAKTKARLSDLELES 479 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL~~LE~es 479 (506)
.+...-.|++..+++|.+.+.||.+||.-.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445566667778888888888888654
No 73
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=57.20 E-value=72 Score=26.49 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 433 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
+++.+.+.......+|+.|.+-+.+..+=+.++.+|=.| |+.+...+.+.|..++-|-..
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~---l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTR---LDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666777777777766666666444 455666666777777776543
No 74
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=57.12 E-value=27 Score=29.60 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcccccccCcc---cchhHH---HHHHHHHHHHHHHHhcc
Q 010595 334 SSILQSIISRYGDIAANCNL---ESNSMR---AYYLECLCSVVQELQST 376 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l---Kn~~lR---s~YMn~LlsLIetL~ks 376 (506)
..+..++|+.||++-.-|.- .|+.++ ..+|..|..+|..|...
T Consensus 28 ~~~y~rlf~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 76 (147)
T 1jf3_A 28 KECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDE 76 (147)
T ss_dssp HHHHHHHHHHCGGGTTTTTCSSTTCHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHhChhHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 56889999999998887764 456777 58999999998877543
No 75
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=57.05 E-value=37 Score=35.42 Aligned_cols=24 Identities=4% Similarity=0.212 Sum_probs=10.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhh
Q 010595 457 EVAGLKESVAKTKARLSDLELESN 480 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~ess 480 (506)
+++++++++.++.+.|.+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 77 KSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445544444443
No 76
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=55.80 E-value=91 Score=32.01 Aligned_cols=46 Identities=15% Similarity=-0.024 Sum_probs=24.4
Q ss_pred EEeccEEeecchHHHHHHHHhhccccc---ccCcccchhHHHHHHHHHHHHH
Q 010595 322 VSVGKYHVRASISSILQSIISRYGDIA---ANCNLESNSMRAYYLECLCSVV 370 (506)
Q Consensus 322 VdVnGFqVlpSqv~iV~~IFeKHpDIA---snf~lKn~~lRs~YMn~LlsLI 370 (506)
+.|||=.|. ...++.++....+|. .++.+-++..|..||+.+++..
T Consensus 129 ~~ing~~v~---~~~l~~~~~~li~i~~q~~~~~l~~~~~rr~~LD~~~~~~ 177 (517)
T 4ad8_A 129 ARLSGEVVS---VRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKE 177 (517)
T ss_dssp EESSSSBCC---HHHHHHHHTTTEEEESGGGGGTTTSHHHHHHHHHTSSHHH
T ss_pred EEECCEECC---HHHHHHHhhhheEEeCCchHHhcCCHHHHHHHHHHHhCcc
Confidence 677775543 233445544433331 1233347777777777666544
No 77
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=55.48 E-value=6.1 Score=31.95 Aligned_cols=32 Identities=6% Similarity=0.173 Sum_probs=26.3
Q ss_pred ccceEEeccEEeecchHHHHHHHHhhcccccccCc
Q 010595 318 ISDSVSVGKYHVRASISSILQSIISRYGDIAANCN 352 (506)
Q Consensus 318 vsEtVdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~ 352 (506)
.-++|.|+|+.|-|++++ .++..||+++..+.
T Consensus 3 ADDmIiv~G~nv~P~eIE---~vl~~~p~v~~~~v 34 (109)
T 3lax_A 3 ADDMIILKGVNIFPIQIE---TILLQFKELGSDYL 34 (109)
T ss_dssp GGSCEEETTEEECHHHHH---HHHHTCTTEEEEEE
T ss_pred cCEEEEECCEEECHHHHH---HHHHhCCCcccceE
Confidence 446799999999999988 56889999976543
No 78
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.90 E-value=1.1e+02 Score=26.80 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=6.7
Q ss_pred CcchhhhhhHHHH
Q 010595 400 QIDVDWLRNILNE 412 (506)
Q Consensus 400 GfKVDWL~kKLeE 412 (506)
++.+|=++.|+..
T Consensus 16 ~~E~e~~k~K~~~ 28 (111)
T 2v66_B 16 KYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555554
No 79
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=54.58 E-value=29 Score=29.46 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhcc
Q 010595 334 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQST 376 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l----------Kn~~lRs---~YMn~LlsLIetL~ks 376 (506)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~ 82 (147)
T 1mba_A 27 LDFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAANA 82 (147)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCHHHHHTCTTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCchHHHhhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 47889999999999988853 4556666 5788888888877543
No 80
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=54.10 E-value=59 Score=33.41 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=13.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNR 481 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~ 481 (506)
.++++++++++.++.+.|.+++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554443
No 81
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=53.76 E-value=6.4 Score=39.75 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 447 QMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 447 ~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
||++|.+.|..|....++|..+++.|..++.+...|++.|..+..++..
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666666666677777777777766666666666666666543
No 82
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=53.56 E-value=40 Score=29.07 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=19.0
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWL 406 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL 406 (506)
+-.+.+||..+. .+..|.+.||.|+=.
T Consensus 37 R~Y~~~dl~~l~-~I~~lr~~G~sl~eI 63 (135)
T 1q06_A 37 RTYTQQHLNELT-LLRQARQVGFNLEES 63 (135)
T ss_dssp EECCHHHHHHHH-HHHHHHHTTCCHHHH
T ss_pred eeeCHHHHHHHH-HHHHHHHCCCCHHHH
Confidence 457888887654 455678899987633
No 83
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=53.27 E-value=27 Score=29.92 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL~ 374 (506)
..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|.
T Consensus 28 ~~~y~~lF~~~P~~k~~F~~~f~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ld 82 (152)
T 3pt8_B 28 TNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTMKAQSLVFCNGMSSFVDNLD 82 (152)
T ss_dssp HHHHHHHHHHCGGGGGGGTTTTTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHChhHHHHhhHHHcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 35889999999999888874 6777776 57777777777664
No 84
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=53.07 E-value=1e+02 Score=25.89 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=15.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 424 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 424 ~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
++++.++++.....+.+..++...-....+++.++..
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~s 48 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQ 48 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444455544444444444433333333333333333
No 85
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=52.87 E-value=48 Score=26.41 Aligned_cols=17 Identities=0% Similarity=0.245 Sum_probs=12.1
Q ss_pred HHHHhhHHhcCcchhhh
Q 010595 390 MAVLKDVESAQIDVDWL 406 (506)
Q Consensus 390 ~~~L~dLe~aGfKVDWL 406 (506)
...+..|+++||-|+=+
T Consensus 6 L~~I~~lr~lGfsL~eI 22 (99)
T 1q08_A 6 LKFIRHARQLGFSLESI 22 (99)
T ss_dssp HHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHCCCCHHHH
Confidence 45677888889986533
No 86
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=52.86 E-value=26 Score=30.17 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcccccccCcc---------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL---------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l---------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 88 (146)
T 1it2_A 35 LNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDN 88 (146)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999998864 7888875 566777777666543
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.73 E-value=54 Score=28.85 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=30.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 431 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 431 d~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
+..+..|+.++.+++..-.+|.... .+.+..|.++++|+.+||.+...-
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777765555554442 334557788888888888665553
No 88
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=52.59 E-value=1.7e+02 Score=28.44 Aligned_cols=14 Identities=7% Similarity=0.354 Sum_probs=5.9
Q ss_pred hhHHHHHHHhhhhh
Q 010595 480 NRLEQIIQATQSKV 493 (506)
Q Consensus 480 s~L~k~v~~~kSKV 493 (506)
++|.+.+..++-++
T Consensus 128 ~k~~~~leeLr~~l 141 (273)
T 3s84_A 128 VKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 89
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=51.57 E-value=1.2e+02 Score=32.03 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=9.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhh
Q 010595 457 EVAGLKESVAKTKARLSDLELES 479 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~es 479 (506)
+++++++++.++.+.|.+++.+.
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433
No 90
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=51.29 E-value=90 Score=26.30 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010595 449 NELALKEKEVAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 449 eeL~qKeKEv~d~~eRv~e~k~RL~~LE~ 477 (506)
++|..-.+++.+..+.|...+.+|.+|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555556666666653
No 91
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=50.87 E-value=21 Score=30.87 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHH-hcCc
Q 010595 334 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE-SAQI 401 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l--------Kn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe-~aGf 401 (506)
..+..++|+.||++-.-|.- .|+.++. .+|..|..+|..|... +.|..+...|...= ..|+
T Consensus 37 ~~~y~rlF~~~P~~k~~F~~f~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~-------~~l~~~l~~L~~~H~~~gV 109 (152)
T 4hrt_B 37 LMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDV-------ERLKCVVEKFAVNHINRQI 109 (152)
T ss_dssp HHHHHHHHHHCTHHHHHTGGGCCCC---CCHHHHHHHHHHHHHHHHHHHTTTCH-------HHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHCHhHHHhhHHhCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHhhCCC
Confidence 57889999999998776664 7888777 4888888888877432 24555555544332 3344
Q ss_pred chh
Q 010595 402 DVD 404 (506)
Q Consensus 402 KVD 404 (506)
+-+
T Consensus 110 ~p~ 112 (152)
T 4hrt_B 110 SAD 112 (152)
T ss_dssp CHH
T ss_pred CHH
Confidence 443
No 92
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=50.69 E-value=35 Score=29.04 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcc
Q 010595 334 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQST 376 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~------lKn~~lRs---~YMn~LlsLIetL~ks 376 (506)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|...
T Consensus 29 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~~ 80 (140)
T 2zs0_A 29 RDLFSELFNIQGSSRALFSGVGVDDMNSAAFTAHCLRVTGALNRLISQLDQQ 80 (140)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHCHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3688999999999987774 34677765 5667777777776543
No 93
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.50 E-value=1.5e+02 Score=30.84 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.3
Q ss_pred HHHHHHHHHhhHH
Q 010595 385 KVKEMMAVLKDVE 397 (506)
Q Consensus 385 dL~ea~~~L~dLe 397 (506)
+|.++..+|.+|.
T Consensus 39 ~l~~LE~~l~els 51 (409)
T 1m1j_C 39 ELLEIEGLLQQAT 51 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 94
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=50.49 E-value=1.4e+02 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
+..+..-+|+-++.+..+...+...+.+|+..
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~e 105 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAE 105 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555443
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=50.01 E-value=98 Score=24.84 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKTKARLS 473 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~ 473 (506)
..++......+.+.+.++....+++.+.-..|.
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444443333
No 96
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=49.90 E-value=1.6e+02 Score=30.35 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHH
Q 010595 384 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEA 416 (506)
Q Consensus 384 ~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ea 416 (506)
..|.++...+..|.. -|+|+=|+.+++|+.+.
T Consensus 9 ~~~~~~~~~~~~~~~-~~~l~~~~~r~~el~~~ 40 (365)
T 1gqe_A 9 NRIQDLTERSDVLRG-YLDYDAKKERLEEVNAE 40 (365)
T ss_dssp HHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Confidence 344444444444443 37777788888877653
No 97
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=49.71 E-value=23 Score=30.33 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|..
T Consensus 28 ~~~y~rlF~~~P~~k~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 83 (152)
T 3pt8_A 28 QGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDD 83 (152)
T ss_dssp HHHHHHHHHHCGGGGGGGHHHHTTSCHHHHTTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCchHHHHhHHHHcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999888875 6777765 567777777766643
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.39 E-value=93 Score=40.22 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 438 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 438 e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
..+.+++++..++|.+++++++++.+++.+.++.+.++-.+-.+|+..+...+.|+.
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555554445544444444444444444444444444443
No 99
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.99 E-value=89 Score=27.09 Aligned_cols=14 Identities=14% Similarity=0.584 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 010595 404 DWLRNILNEISEAI 417 (506)
Q Consensus 404 DWL~kKLeEV~Ear 417 (506)
.|-+.|++++....
T Consensus 13 ~~y~~K~eel~~~~ 26 (131)
T 3tnu_A 13 EWFFTKTEELNREV 26 (131)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 47778877776444
No 100
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.46 E-value=23 Score=32.06 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010595 434 VNLLESTKKELESQMNELA 452 (506)
Q Consensus 434 e~~~e~~kkELEe~leeL~ 452 (506)
+...+..+..|+.+|++|.
T Consensus 62 R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 62 RTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666554
No 101
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=48.31 E-value=1.6e+02 Score=26.90 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 010595 444 LESQMNELALKEKE 457 (506)
Q Consensus 444 LEe~leeL~qKeKE 457 (506)
.+++++.|..+.++
T Consensus 75 yEeqIk~L~~kLKE 88 (155)
T 2efr_A 75 YEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 102
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.13 E-value=64 Score=30.76 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010595 426 IDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 485 (506)
Q Consensus 426 leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~ 485 (506)
+++..++.+.+|..+-.|..-.-++|..+..|++.+++++...++.+..++...++-..+
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~ 70 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAEN 70 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 344455666777777666666666677777777777777777777776665554444333
No 103
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=47.14 E-value=1e+02 Score=24.14 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHH-------HHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 437 LESTKKELESQMNELALKEKEVAG--LKESVAKT-------KARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 437 ~e~~kkELEe~leeL~qKeKEv~d--~~eRv~e~-------k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
+.....+|..++++++++-.+-.+ ++.++.++ .+-|...+++.++|..+|..|...++-..|
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 104
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=46.68 E-value=28 Score=29.97 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 333 ISSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAsnf~l----------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
-..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|..
T Consensus 36 g~~~y~rlf~~~P~~~~~F~~~~d~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 91 (159)
T 1hlm_A 36 VADVFIRIFHNDPTAQRKFPQMAGLSPAELRTSRQMHAHAIRVSALMTTYIDEMDT 91 (159)
T ss_dssp HHHHHHHHTTTCSTTTTSSTTTTTSCSTTCSCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHCHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 457899999999999988865 5677776 788888888887755
No 105
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=46.07 E-value=97 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHhh
Q 010595 469 KARLSDLELESNRLEQIIQATQ 490 (506)
Q Consensus 469 k~RL~~LE~ess~L~k~v~~~k 490 (506)
+..|.+||....++.+.|..|+
T Consensus 57 ~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 57 AKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444443
No 106
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=45.99 E-value=1.4e+02 Score=25.55 Aligned_cols=47 Identities=32% Similarity=0.388 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 436 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 436 ~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
.++.++++|+....+|......+.-...--..|..+|..++.+...|
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444433333333333334555555555544443
No 107
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=45.96 E-value=58 Score=27.88 Aligned_cols=64 Identities=8% Similarity=0.116 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhc--Ccc
Q 010595 334 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA--QID 402 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l------Kn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~a--GfK 402 (506)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.... .|..+...|...=.. |++
T Consensus 34 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H~~~~~V~ 106 (148)
T 1yhu_C 34 EEVFAALFKMVPAAKNLFTRVNVADINSPEFQGHVVRVMGGLDILINALDDIP-------TLESMLDHLAGQHAVRDGVT 106 (148)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTGGGTTSHHHHHHHHHHHHHHHHHHHGGGCHH-------HHHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHChhHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHccccCCC
Confidence 57899999999999887754 3666654 67778888887775432 455555555544332 554
Q ss_pred hh
Q 010595 403 VD 404 (506)
Q Consensus 403 VD 404 (506)
-+
T Consensus 107 p~ 108 (148)
T 1yhu_C 107 GA 108 (148)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 108
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=45.77 E-value=1.4e+02 Score=27.14 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 010595 461 LKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L 482 (506)
.+.++.+.+..|.++..-..+|
T Consensus 119 ~e~~leeyK~Kl~rv~~vkkeL 140 (152)
T 4fla_A 119 KEKKLEEYKQKLARVTQVRKEL 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444444443
No 109
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=45.77 E-value=64 Score=28.28 Aligned_cols=29 Identities=3% Similarity=0.131 Sum_probs=20.1
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~k 408 (506)
+..+.+||..+.. +..|.+.||-|+=.+.
T Consensus 53 R~Y~~~dl~~l~~-I~~lr~~G~sL~eIk~ 81 (148)
T 3gpv_A 53 RIFNEEALKYLEM-ILCLKNTGMPIQKIKQ 81 (148)
T ss_dssp EEBCHHHHHHHHH-HHHHHTTTCCHHHHHH
T ss_pred eecCHHHHHHHHH-HHHHHHcCCCHHHHHH
Confidence 5678888886554 5666889997654333
No 110
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.21 E-value=93 Score=23.19 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKT 468 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~ 468 (506)
+.++++....|.+..+.+..+++.|..+
T Consensus 25 ~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 25 TDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333443333343333344333
No 111
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=45.06 E-value=2.6e+02 Score=29.69 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010595 468 TKARLSDLE 476 (506)
Q Consensus 468 ~k~RL~~LE 476 (506)
++.+|.+||
T Consensus 180 l~~ki~~l~ 188 (464)
T 1m1j_B 180 LHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 112
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=45.04 E-value=45 Score=31.29 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 468 TKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 468 ~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
+++++-++..+..++.++..-=+....+|...+|+-+||
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LL 96 (197)
T 1dkg_A 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELL 96 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888887765
No 113
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=44.79 E-value=47 Score=28.49 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l--------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ldd 87 (150)
T 1sct_A 35 LMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDD 87 (150)
T ss_dssp HHHHHHHHHHCGGGGGGGCTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHChhHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57889999999999888863 5666664 688888888887754
No 114
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=44.37 E-value=1.4e+02 Score=29.41 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 470 ARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 470 ~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
.||+.||+..+.|+..|..++.+++
T Consensus 198 ~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 198 GKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3666666666666666666666654
No 115
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=43.81 E-value=1.7e+02 Score=25.86 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc-ccchhh
Q 010595 467 KTKARLSDLELESNRLEQIIQATQSKVTKFS-QKSLAD 503 (506)
Q Consensus 467 e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~-~kSl~D 503 (506)
++.+-+.+++.....|...|.....+|+.|. -++|-+
T Consensus 72 ~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~lr~ 109 (119)
T 3etw_A 72 QYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRA 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6677888888888888888988999999994 344433
No 116
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=43.68 E-value=51 Score=28.20 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ldd 90 (149)
T 2lhb_A 35 VDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDD 90 (149)
T ss_dssp HHHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHhHHHHhhhhcCCCCHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999888752 4667764 577888888877754
No 117
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.64 E-value=73 Score=24.76 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010595 455 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~ 487 (506)
+.++.++..+-.+++.++..|+.+..-|.+.|.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445666677778888877777766543
No 118
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=43.30 E-value=52 Score=28.16 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhc--Ccc
Q 010595 334 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA--QID 402 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~------lKn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~a--GfK 402 (506)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.... .|..+...|...=.. ||+
T Consensus 33 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~-------~l~~~l~~L~~~H~~~~gV~ 105 (147)
T 2zs0_C 33 QAVFASLFSRDAAAQGLFSGVSADNPDSADFRAHCVRVVNGLDVAINMLNDPA-------VLNEQLAHLSAQHQARAGVA 105 (147)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHCHHHHHhccccCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHhccccCCC
Confidence 5789999999999988774 33677776 46777777777665432 455555555544332 444
Q ss_pred hh
Q 010595 403 VD 404 (506)
Q Consensus 403 VD 404 (506)
-+
T Consensus 106 p~ 107 (147)
T 2zs0_C 106 AA 107 (147)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 119
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=43.15 E-value=52 Score=28.02 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l------Kn~~lR---s~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.|+ ...|+.|..+|..|..
T Consensus 31 ~~~y~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd 81 (145)
T 1x9f_B 31 QAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQ 81 (145)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhChHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56889999999999887753 355565 4678888888877754
No 120
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=43.05 E-value=1.6e+02 Score=26.68 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhcccccccCcccchhHHHHHH----------HHHHHHHHHHhc--chhhhccHHHHHHHHHHHhhHHhcC
Q 010595 333 ISSILQSIISRYGDIAANCNLESNSMRAYYL----------ECLCSVVQELQS--TSLMQMTKAKVKEMMAVLKDVESAQ 400 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAsnf~lKn~~lRs~YM----------n~LlsLIetL~k--splqeLS~~dL~ea~~~L~dLe~aG 400 (506)
-...|+..+.||-.+-.+...-.+.+..... ..|-.-++.|++ ..|.+++............++.++-
T Consensus 51 Dl~~v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le~l~~F~~~~~ 130 (224)
T 2iak_A 51 DLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRAT 130 (224)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877766664444433221 111111111111 0124444444444334444444444
Q ss_pred cchhhhhhHHHHH
Q 010595 401 IDVDWLRNILNEI 413 (506)
Q Consensus 401 fKVDWL~kKLeEV 413 (506)
--..||..+...+
T Consensus 131 ~~~~Wi~eke~~~ 143 (224)
T 2iak_A 131 NELIWLNEKEESE 143 (224)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5579999888754
No 121
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=42.88 E-value=1.7e+02 Score=25.46 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=14.8
Q ss_pred cchHHHHHHHHhhcccccccCc
Q 010595 331 ASISSILQSIISRYGDIAANCN 352 (506)
Q Consensus 331 pSqv~iV~~IFeKHpDIAsnf~ 352 (506)
+.-+..|+.++.+|-.+-.++.
T Consensus 29 g~dl~~v~~ll~kh~~~~~ei~ 50 (213)
T 1cun_A 29 GRDLTGVQNLRKKHKRLEAELA 50 (213)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888887654443
No 122
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=42.46 E-value=1.4e+02 Score=24.53 Aligned_cols=44 Identities=16% Similarity=0.416 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
..||.-+++.|..+.+-+-+ ||+.||+.-+.|+..+..+..+++
T Consensus 23 I~EID~Ki~nL~~mR~ivld----------RlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 23 IRDIEVEVENLRQKKEKLLG----------KIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455555667666666555 889999999999998888887765
No 123
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.99 E-value=2.2e+02 Score=30.53 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 404 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 404 DWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
+-|+.++..+...--.+.++.. .+++.++-+++.+..++..|..++.-+.+
T Consensus 93 ~~lk~~~~q~~dndn~~~e~S~------eLe~ri~yIK~kVd~qi~~IrvLq~~l~~ 143 (491)
T 1m1j_A 93 NILKPGLEGAQQLDENYGHVST------ELRRRIVTLKQRVATQVNRIKALQNSIQE 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655544443332 24455555555555555555555444444
No 124
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=41.99 E-value=1.5e+02 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=15.6
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010595 424 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 460 (506)
Q Consensus 424 ~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d 460 (506)
++++.++++.....+.+..++...-....+++.++..
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~s 48 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQG 48 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444555554444444444443333333333333333
No 125
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=41.91 E-value=63 Score=27.70 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcccccccCccc---------chhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCNLE---------SNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lK---------n~~lRs---~YMn~LlsLIetL~ 374 (506)
..+..++|+.||++-.-|... |+.++. ..|..|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l~ 77 (153)
T 2bk9_A 25 AAILTQFFNRFPSNLEKFPFRDVPLEELSGNARFRAHAGRIIRVFDESIQVLG 77 (153)
T ss_dssp HHHHHHHHHHCGGGGGGSTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhChhHHhcCcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcc
Confidence 567999999999999888743 556663 56777777777763
No 126
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=41.21 E-value=22 Score=30.67 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 333 ISSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAsnf~l----------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
-..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|..
T Consensus 36 g~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~ 91 (158)
T 1hlb_A 36 VTDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDS 91 (158)
T ss_dssp HHHHHHHHHHHCTHHHHTSGGGTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHCHHHHHHhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCc
Confidence 457899999999999888865 6777776 677777777776644
No 127
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=41.20 E-value=67 Score=27.55 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 010595 334 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 376 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l------Kn~~lR---s~YMn~LlsLIetL~ks 376 (506)
..+..++|+.||++-.-|.- .|+.++ ...|+.|..+|..|...
T Consensus 33 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 84 (149)
T 1yhu_D 33 QAVFKDLFANVPDAVGLFGAVKGDEVNSNEFKAHCIRVVNGLDSSIGLLSDP 84 (149)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTSSSTTSHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 57899999999999887753 366677 46678888888877543
No 128
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=41.02 E-value=54 Score=27.68 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 333 ISSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 333 qv~iV~~IFeKHpDIAsnf~l------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
-..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 30 g~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd 81 (144)
T 1yhu_B 30 GHFIWSHVFQHSPAARDMFKRVRGDNIHTPAFRAHATRVLGGLDMCIALLDD 81 (144)
T ss_dssp HHHHHHHHHHHCGGGGGGGGGGTTTCSSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHChHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 357889999999998877763 3566665 688888888888754
No 129
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.68 E-value=47 Score=34.02 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010595 433 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK 469 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k 469 (506)
+++.++.++.++++..+.|...+...+.+-.++.+++
T Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 22 LKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444444444433333333444443
No 130
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.54 E-value=1.4e+02 Score=24.04 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 462 KESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
..++..+..++..|+.....+.+.+..++.++.
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555543
No 131
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=40.25 E-value=83 Score=24.99 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 010595 410 LNEISEAI 417 (506)
Q Consensus 410 LeEV~Ear 417 (506)
|+||.+..
T Consensus 19 L~eIk~~l 26 (99)
T 1q08_A 19 LESIRELL 26 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 132
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=39.44 E-value=39 Score=29.32 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcccccccCc-c---------cchhHHH---HHHHHHHHHHHHHhcc
Q 010595 334 SSILQSIISRYGDIAANCN-L---------ESNSMRA---YYLECLCSVVQELQST 376 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~-l---------Kn~~lRs---~YMn~LlsLIetL~ks 376 (506)
.+++.++|+.||++-.-|. + .|+.|+. ..|..|..+|..|...
T Consensus 18 ~~~l~rlF~~~P~tk~~F~~f~~~s~~~l~~n~~~~aHg~kV~~al~~~v~~ldd~ 73 (137)
T 3lb2_A 18 QDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDC 73 (137)
T ss_dssp HHHHHHHHHHSGGGGGGCTTTTTCCCC-CTTSHHHHHHHHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHCHHHHHHhHHcCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4688999999999988876 2 3577776 5677777777777543
No 133
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=39.35 E-value=43 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 463 ESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 463 eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
.+|++...+...|+.+..+|...+
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455556666666666666665544
No 134
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=39.16 E-value=56 Score=28.25 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHh
Q 010595 334 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 398 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l------Kn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~ 398 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.... .|..+...|...=.
T Consensus 36 ~~~~~rlF~~~P~~k~~F~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H~ 102 (151)
T 1x9f_A 36 RAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTL-------VLQSHLGHLADQHI 102 (151)
T ss_dssp HHHHHHHHHHCGGGGGGGTTTTTTSTTSSHHHHHHHHHHHHHHHHHTTTTCHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHhc
Confidence 47899999999999877753 3777764 56777777777664332 45555555554433
No 135
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=38.83 E-value=2.4e+02 Score=26.14 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=21.4
Q ss_pred hhccHHHHHHHHHHH--hhHHhcCcchhhhhhHHHHHHHH
Q 010595 379 MQMTKAKVKEMMAVL--KDVESAQIDVDWLRNILNEISEA 416 (506)
Q Consensus 379 qeLS~~dL~ea~~~L--~dLe~aGfKVDWL~kKLeEV~Ea 416 (506)
..|-.++|..=++.+ ..|..+.=-+++|+.+|.-+.+.
T Consensus 30 ~~l~~sel~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e 69 (216)
T 2lem_A 30 SQFESSSLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRD 69 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555555554433332 34555555678888888765433
No 136
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=38.51 E-value=39 Score=28.93 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l--------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 36 ~~~y~rlF~~~P~~k~~F~~f~~~~~~~~n~~~~~h~~~v~~al~~~v~~ld~ 88 (151)
T 1sct_B 36 LMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDD 88 (151)
T ss_dssp HHHHHHHHHHCHHHHHHTGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHhCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47889999999998877762 5666654 677777777776643
No 137
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.32 E-value=33 Score=26.29 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 010595 463 ESVAKTKARLSD 474 (506)
Q Consensus 463 eRv~e~k~RL~~ 474 (506)
+++.+.+.||.+
T Consensus 40 ~~~~el~~~l~~ 51 (53)
T 2yy0_A 40 EENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 344455555543
No 138
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.12 E-value=1.2e+02 Score=23.60 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010595 462 KESVAKTKARLSDLELESNRLEQIIQATQSKV 493 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV 493 (506)
|..+.+-..+|..||.+-++++..+.-+++|+
T Consensus 23 rrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 23 RQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
Confidence 34444567788888888888888888777764
No 139
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=37.95 E-value=68 Score=27.73 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l----------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..++.++|..||++-.-|.- .|+.|+. ..|+.|..+|..|..
T Consensus 30 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 84 (148)
T 2vyw_A 30 VSIYKTLFAAHPEYISYFSKLQGLTKDNVGQSEGIRYYGRTLGEELIRLLKAASN 84 (148)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGCSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999887752 4555654 578888888876643
No 140
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=37.84 E-value=54 Score=28.37 Aligned_cols=41 Identities=7% Similarity=0.204 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l----------Kn~~lRs---~YMn~LlsLIetL~ 374 (506)
..++.++|..||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld 82 (147)
T 1h97_A 29 LGAYHALFTAHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEIS 82 (147)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGSHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccC
Confidence 58899999999998887752 3777764 46666666666554
No 141
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A* 1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A* 2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Probab=37.82 E-value=1.8e+02 Score=24.41 Aligned_cols=69 Identities=6% Similarity=0.050 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcccccccCcc---------cchhHHH---HHHHHHHHHHHHHhcchhhhc--cHHHHHHHHHHHhhHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL---------ESNSMRA---YYLECLCSVVQELQSTSLMQM--TKAKVKEMMAVLKDVESA 399 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l---------Kn~~lRs---~YMn~LlsLIetL~ksplqeL--S~~dL~ea~~~L~dLe~a 399 (506)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|....+..| .-.+|...+.. .
T Consensus 27 ~~fy~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~~~l~~~l~~L~~~H~~------~ 100 (153)
T 1gdj_A 27 HRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLEVTGVVVTDATLKNLGSVHVS------K 100 (153)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHH------H
T ss_pred HHHHHHHHHHCHhHHHhhhhccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhh------c
Confidence 57889999999999987753 3677754 478888888887765331122 23344444443 2
Q ss_pred Ccchhhhhh
Q 010595 400 QIDVDWLRN 408 (506)
Q Consensus 400 GfKVDWL~k 408 (506)
|++-++..-
T Consensus 101 gV~p~~f~~ 109 (153)
T 1gdj_A 101 GVADAHFPV 109 (153)
T ss_dssp TCCGGGHHH
T ss_pred CCCHHHHHH
Confidence 566555543
No 142
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=37.47 E-value=35 Score=33.06 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=49.8
Q ss_pred HHHHHHHHhhc-cccccc--Ccccch---------------------hHHHHHHHHHHHHHHHHhcchh-----------
Q 010595 334 SSILQSIISRY-GDIAAN--CNLESN---------------------SMRAYYLECLCSVVQELQSTSL----------- 378 (506)
Q Consensus 334 v~iV~~IFeKH-pDIAsn--f~lKn~---------------------~lRs~YMn~LlsLIetL~kspl----------- 378 (506)
-+.|...-.|| .||..| ||.+-+ -+-.+|.++=..|||.+..+--
T Consensus 40 ~~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDPLa~s~kg~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el 119 (233)
T 1u5t_A 40 QERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQEL 119 (233)
T ss_dssp HHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHHTTSSGGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHH
T ss_pred HHHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCCCccCCccccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHH
Confidence 35566677789 899888 522211 1346788888888876655441
Q ss_pred -------hhccHHHHHHHHHHHhhHHhcCcchh
Q 010595 379 -------MQMTKAKVKEMMAVLKDVESAQIDVD 404 (506)
Q Consensus 379 -------qeLS~~dL~ea~~~L~dLe~aGfKVD 404 (506)
+.||.+||..|...|.-| .||.|-
T Consensus 120 ~~~~~r~~~IS~dDi~rAik~L~~L--~gf~v~ 150 (233)
T 1u5t_A 120 EKVHFRKLNVGLDDLEKSIDMLKSL--ECFEIF 150 (233)
T ss_dssp HHTTTTTTTCCHHHHHHHHHHHTTT--CCCCEE
T ss_pred HHHHHhhcCCCHHHHHHHHHHhhhc--cCeEEE
Confidence 289999999999999999 799883
No 143
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.31 E-value=1.3e+02 Score=25.82 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 432 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 432 ~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
.+...+.....+|+.+++.|..+-..+..+..+..-++.+-..|+.+..+-
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445556666777777766666666555555555555555555555444443
No 144
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=37.22 E-value=1.1e+02 Score=28.96 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=5.8
Q ss_pred hHHHHHHHhhhhh
Q 010595 481 RLEQIIQATQSKV 493 (506)
Q Consensus 481 ~L~k~v~~~kSKV 493 (506)
+|...+..++.|+
T Consensus 195 kl~~~~e~lr~~l 207 (243)
T 2a01_A 195 KATEHLSTLSEKA 207 (243)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 145
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.15 E-value=1.4e+02 Score=28.67 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=9.3
Q ss_pred hhhhhhhccccchhhhc
Q 010595 489 TQSKVTKFSQKSLADEI 505 (506)
Q Consensus 489 ~kSKV~kF~~kSl~D~l 505 (506)
++..+.+..-.+.+||.
T Consensus 148 a~~~l~~~~i~AP~~G~ 164 (369)
T 4dk0_A 148 AETNLGYTKITSPIDGT 164 (369)
T ss_dssp HHHTTCCSSCCCSCCSC
T ss_pred HHHHhhcCEEECCCCeE
Confidence 44444555556666664
No 146
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.04 E-value=1.7e+02 Score=23.90 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 462 KESVAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
..|+..+..++..|+.....+.+.+..++.++..
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544
No 147
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=36.30 E-value=93 Score=29.02 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHH
Q 010595 367 CSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 367 lsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
|.||+.|..--...+|-++|.-|+ .... .+.-++||++.|-.+.+.+
T Consensus 15 l~lV~liREaEk~GfspEEV~aAl-~~~g---~~~P~~WLk~ewp~ll~~V 61 (162)
T 4dbg_B 15 LQLVSMIREGEAAGACPEEIFSAL-QYSG---TEVPLQWLRSELPYVLEMV 61 (162)
T ss_dssp HHHHHTTSTTCCSCCCHHHHHHHH-HHHT---CCCCHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-HhcC---CCCcHHHHHHHHHHHHHHH
Confidence 567787777777889999988777 4333 6789999999877655544
No 148
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=36.27 E-value=2.1e+02 Score=24.62 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 010595 404 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 483 (506)
Q Consensus 404 DWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~ 483 (506)
.-|+..|+++.-.+ +.++.+.++....++..+.+.|.++..-...|.++..++.-+.+.--.-++||.....|.
T Consensus 23 ~~LR~qid~~~~e~------a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 23 RELRRQVDQLTNDK------ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 34556666555444 344455566666666666666655544444444444444444444333344555555555
Q ss_pred HHHHHhh
Q 010595 484 QIIQATQ 490 (506)
Q Consensus 484 k~v~~~k 490 (506)
.-|.++|
T Consensus 97 eEl~FLK 103 (119)
T 3ol1_A 97 EEIAFLK 103 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 149
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.25 E-value=3.4e+02 Score=27.09 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 440 TKKELESQMNELALKEKEVAGLK-----------ESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 440 ~kkELEe~leeL~qKeKEv~d~~-----------eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
+.++|.+-.+.|.+.+++..-+. .++..-..|+.+||.+.++|++.|.++..-|++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666666654332 2233334688999999999999998888877653
No 150
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=36.02 E-value=1.6e+02 Score=23.26 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=18.9
Q ss_pred HHHHHHHHhhHHhcCcchhhhhhHHHHHHHHH
Q 010595 386 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 386 L~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
|.++...|......|-.++=++..|.+.....
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~ 49 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFM 49 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 34445556666666777766666666554444
No 151
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.84 E-value=2.9e+02 Score=26.12 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhHH
Q 010595 384 AKVKEMMAVLKDVE 397 (506)
Q Consensus 384 ~dL~ea~~~L~dLe 397 (506)
.+|..+...+++|.
T Consensus 49 ~eL~~~Ek~~~~L~ 62 (189)
T 2v71_A 49 AQLVQAEQRNRDLQ 62 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 152
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=35.55 E-value=46 Score=30.80 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHhhhhhh
Q 010595 477 LESNRLEQIIQATQSKVT 494 (506)
Q Consensus 477 ~ess~L~k~v~~~kSKV~ 494 (506)
...++|.+.+..++.++.
T Consensus 165 elk~~l~~~veel~~~L~ 182 (191)
T 1nfn_A 165 GAREGAERGLSAIRERLG 182 (191)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 334444445555555443
No 153
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=35.17 E-value=1.4e+02 Score=24.61 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=34.3
Q ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 451 LALKEKEVAGLKESVA-KTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~-e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
+..--..+.++=.+.. .|+.||..|+.+...|+..|..+..||..
T Consensus 25 in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 25 ITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333445555555555 58999999999999999999999999865
No 154
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=34.72 E-value=43 Score=28.94 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELE 478 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~e 478 (506)
|..+++.|++..+.+..+..+|.+++.+|.++...
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555665666666666666666666666543
No 155
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=34.35 E-value=50 Score=27.88 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~~~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 81 (142)
T 1b0b_A 26 PEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDN 81 (142)
T ss_dssp HHHHHHHHHHCHHHHHTTTTTTTTCCGGGCTTSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCchHHHHhHHhhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCC
Confidence 57889999999999887764 3555664 567777777765543
No 156
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=34.29 E-value=76 Score=27.26 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcccccccCc-c---------cchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCN-L---------ESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~-l---------Kn~~lRs---~YMn~LlsLIetL~ 374 (506)
..+..++|+.||++-.-|. + .|+.+|. ..|..|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld 78 (151)
T 2c0k_A 25 VEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRILRQVDEGVKALS 78 (151)
T ss_dssp HHHHHHHHHHCGGGGGGCHHHHTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCHHHHHHHHHhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5788999999999887775 1 4555554 57888888888776
No 157
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=34.16 E-value=3e+02 Score=25.92 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHH-HHHhhhhHHHHHHHhhh
Q 010595 463 ESVAKTKARLSD-LELESNRLEQIIQATQS 491 (506)
Q Consensus 463 eRv~e~k~RL~~-LE~ess~L~k~v~~~kS 491 (506)
.++.+++++|.- .+....+|.+.+..++.
T Consensus 154 ~~veelk~~l~P~~ee~r~kl~~~~~el~~ 183 (243)
T 2a01_A 154 AHVDALRTHLAPYSDELRQRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444554442 23444444455555554
No 158
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.13 E-value=3e+02 Score=29.23 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhH
Q 010595 458 VAGLKESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ess~L 482 (506)
++++++++.++.+.|.+++.+...+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777776665543
No 159
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=33.81 E-value=19 Score=29.35 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=26.1
Q ss_pred ccceEEeccEEeecchHHHHHHHHhhcccccccCcc
Q 010595 318 ISDSVSVGKYHVRASISSILQSIISRYGDIAANCNL 353 (506)
Q Consensus 318 vsEtVdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~l 353 (506)
..++|.|+|+.|.|++++. ++..||.++..+.+
T Consensus 3 ~~D~Iiv~G~nv~P~eIE~---~l~~~p~v~~~~~v 35 (109)
T 3gxs_A 3 ADDMIILKGVNIFPIQIET---ILLQFKELGSDYLI 35 (109)
T ss_dssp GGSCEEETTEEECHHHHHH---HHHTCTTEEEEEEE
T ss_pred ccCEEEECCEEECHHHHHH---HHHhCCCcCCcEEE
Confidence 3577999999999999875 46679999866543
No 160
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.44 E-value=2e+02 Score=25.47 Aligned_cols=45 Identities=24% Similarity=0.241 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhhhhHHHHHH
Q 010595 443 ELESQMNELALKEKEVAGLKESVAKT-KARLSDLELESNRLEQIIQ 487 (506)
Q Consensus 443 ELEe~leeL~qKeKEv~d~~eRv~e~-k~RL~~LE~ess~L~k~v~ 487 (506)
.|+.+++.|.++|.+.=..+..+.+. ..+|..+..+...|+.++.
T Consensus 13 ~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~ 58 (119)
T 3etw_A 13 ALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433322222222 4445544444444444443
No 161
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=33.43 E-value=2.1e+02 Score=23.91 Aligned_cols=44 Identities=2% Similarity=0.138 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcccccccCcccchhH---HHHHHHHHHHHHHHHhcch
Q 010595 334 SSILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQSTS 377 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lKn~~l---Rs~YMn~LlsLIetL~ksp 377 (506)
..+..++|+.||++..-|.--|+.+ ....+..|..+|..|....
T Consensus 26 ~~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~v~~ld~~~ 72 (146)
T 2vhb_A 26 TTFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLP 72 (146)
T ss_dssp HHHHHHHHHHCGGGGGGC--------CCCCCHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHChHHHHhcCcchhhhhHHHHHHHHHHHHHHHhccChH
Confidence 3577889999999999887644433 2467788888888776433
No 162
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=33.30 E-value=49 Score=27.97 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcccccccCc----------ccchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCN----------LESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~----------lKn~~lRs---~YMn~LlsLIetL~ 374 (506)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 80 (141)
T 1ith_A 27 DSIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALG 80 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHhHhhcCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Confidence 5688999999999988775 33676664 56677777776664
No 163
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=33.19 E-value=96 Score=26.76 Aligned_cols=41 Identities=5% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l----------Kn~~lRs---~YMn~LlsLIetL~ 374 (506)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|.
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~ah~~~v~~~l~~~v~~ld 82 (152)
T 1x3k_A 29 NTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKNVG 82 (152)
T ss_dssp HHHHHHHHHHSGGGGGGSTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCC
Confidence 47889999999999888862 3666665 45555556666664
No 164
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.98 E-value=2.9e+02 Score=25.35 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhHH
Q 010595 384 AKVKEMMAVLKDVE 397 (506)
Q Consensus 384 ~dL~ea~~~L~dLe 397 (506)
+.|..|++--++|+
T Consensus 6 tKLI~Ain~qs~Le 19 (154)
T 2ocy_A 6 TQLIESVDKQSHLE 19 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHH
Confidence 34555555555555
No 165
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=32.73 E-value=2.1e+02 Score=23.63 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=32.1
Q ss_pred HHHHHHHhhcccccccCcc---cchhHHHHHHHHHHHHHHHHhcch
Q 010595 335 SILQSIISRYGDIAANCNL---ESNSMRAYYLECLCSVVQELQSTS 377 (506)
Q Consensus 335 ~iV~~IFeKHpDIAsnf~l---Kn~~lRs~YMn~LlsLIetL~ksp 377 (506)
.+..++|+.||++..-|.. +...-....|+.|..+|.-|....
T Consensus 26 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~~~~~l~~~v~~ld~~~ 71 (140)
T 2wy4_A 26 EFYKIMFNDYPEVKPMFNMEKQISGEQPKALAMAILMAAKNIENLE 71 (140)
T ss_dssp HHHHHHHHHCGGGGGGSCHHHHHTSHHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHHChHHHHhcCcCcccHHHHHHHHHHHHHHHHHhccCHH
Confidence 5677999999999998852 223345688888888888776544
No 166
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=32.47 E-value=94 Score=26.17 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.|+. ..|+.|..+|..|..
T Consensus 29 ~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~ 79 (140)
T 1x9f_D 29 LELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDT 79 (140)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56889999999999887753 3566664 578888888887754
No 167
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=32.25 E-value=91 Score=26.34 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcccccccCc-----ccchhHH---HHHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCN-----LESNSMR---AYYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~-----lKn~~lR---s~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|. ..|+.|+ ...|+.|..+|.-|..
T Consensus 27 ~~~y~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~ 76 (142)
T 1jeb_A 27 TETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHGSKVVAAVGDAVKSIDD 76 (142)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCccHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4788999999999988776 3456676 4677888888776643
No 168
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=32.24 E-value=81 Score=27.02 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~------lKn~~lRs---~YMn~LlsLIetL~k 375 (506)
..++.++|+.||++-.-|. ..|+.|+. ..|+.|..+|..|..
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd 79 (145)
T 1yhu_A 29 DALWRNVFNYAPNARDIFESVNSKDMASPEFKAHIARVLGGLDRVISMLDN 79 (145)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHcCHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999877664 23566654 567777777776643
No 169
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=31.95 E-value=2.6e+02 Score=24.53 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 010595 450 ELALKEKEVAGLKESVAKTKARL 472 (506)
Q Consensus 450 eL~qKeKEv~d~~eRv~e~k~RL 472 (506)
||.....-|.+++.+|.+|+..|
T Consensus 106 Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 106 DLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666554
No 170
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.87 E-value=1.7e+02 Score=26.09 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=7.5
Q ss_pred hccHHHHHHHHHHHhh
Q 010595 380 QMTKAKVKEMMAVLKD 395 (506)
Q Consensus 380 eLS~~dL~ea~~~L~d 395 (506)
.|=+..|..|...|.+
T Consensus 28 ~lLq~qLTqAQe~l~~ 43 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQD 43 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455555544444
No 171
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.86 E-value=2.1e+02 Score=23.27 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 499 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~k 499 (506)
....+.+=-..|.++..+..+..-+|.....++.++..+
T Consensus 48 ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 48 MGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 455666667778888888877777888888888877653
No 172
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=31.73 E-value=73 Score=27.43 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHh
Q 010595 334 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 398 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~------lKn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~ 398 (506)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.... .|..+...|...=.
T Consensus 37 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~-------~l~~~l~~L~~~H~ 103 (153)
T 1x9f_C 37 RLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPP-------ALDAALDHLAHQHE 103 (153)
T ss_dssp HHHHHHHHHHSTTHHHHTGGGTGGGTTSHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHhhhhcCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhhc
Confidence 5789999999999877664 34666663 45777777777664432 35555555554443
No 173
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=31.72 E-value=1.7e+02 Score=24.10 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 457 EVAGLKESVA-KTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 457 Ev~d~~eRv~-e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
.+.++=.+.. -|+.||..|+.+...|+..|..+..||.
T Consensus 31 ~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 31 KIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444434554 5788888888888888888888888874
No 174
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=31.66 E-value=1.1e+02 Score=25.26 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 010595 334 SSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 377 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ksp 377 (506)
..+..++|+.||++-.-|.-....=....|..|..+|..|....
T Consensus 25 ~~fy~rlf~~~P~~k~~F~~d~~~h~~~l~~al~~~v~~ld~~~ 68 (131)
T 3ubc_A 25 LLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLE 68 (131)
T ss_dssp HHHHHHHHHHCGGGGGGCCSCHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHhChHHHHHccccHHHHHHHHHHHHHHHHHhCCChH
Confidence 35688999999999888876433345567888888887775443
No 175
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.62 E-value=34 Score=35.15 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=9.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHhh
Q 010595 458 VAGLKESVAKTKARLSDLELES 479 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~es 479 (506)
++++++++.++.+.|.+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443
No 176
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.41 E-value=3.6e+02 Score=28.98 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 010595 434 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 434 e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k 484 (506)
+..+...-.+||..++.|.++-..- + .+|..++.-|.++--+-.+|+.
T Consensus 106 dn~~~e~S~eLe~ri~yIK~kVd~q--i-~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 106 DENYGHVSTELRRRIVTLKQRVATQ--V-NRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666655555332221 1 4555555555444444444443
No 177
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=31.35 E-value=2.3e+02 Score=23.67 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 465 VAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 465 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
-.+.+..|-+++++.--|.-.+.+...-+++..
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566667777777777666666666666543
No 178
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=31.25 E-value=4.3e+02 Score=27.18 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010595 463 ESVAKTKARLSDLEL 477 (506)
Q Consensus 463 eRv~e~k~RL~~LE~ 477 (506)
+.+.+++.+|.+||+
T Consensus 101 ~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 101 AELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555554
No 179
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=31.24 E-value=95 Score=26.39 Aligned_cols=42 Identities=10% Similarity=0.164 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcccccccCcc----c------chhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL----E------SNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l----K------n~~lRs---~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- . |+.++. ..|+.|..+|..|..
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 81 (150)
T 1x46_A 27 VDILYNFFKSYPASQAKFSAFAGKDLESLKDTAPFALHATRIVSVINEAIALMGV 81 (150)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCHHHHHhhHhccCCCHHHHhhChHHHHHHHHHHHHHHHHHHHccC
Confidence 88999999999999888862 1 555654 678888888888865
No 180
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=31.07 E-value=2.5e+02 Score=24.59 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcccccccCcccc-----hhHHH---HHHHHHHHHHHHHhcch
Q 010595 334 SSILQSIISRYGDIAANCNLES-----NSMRA---YYLECLCSVVQELQSTS 377 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lKn-----~~lRs---~YMn~LlsLIetL~ksp 377 (506)
..+..+||+.||++-.=|.... +.+|. ..|++|-.+|..|....
T Consensus 28 ~~~f~rLF~~~P~~k~lF~~~~~~~~~~~~~~Ha~rv~~~l~~~V~~Ldd~~ 79 (161)
T 3mvc_A 28 ISIFRNSFFKNPEIRQMIMFGTKNEGHERLKKHAQLFTVLMDDLIANLDSPS 79 (161)
T ss_dssp HHHHHHHHHHCHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHhChhHHHHhccCcccCCcHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 6789999999999877765422 23332 57788888888775543
No 181
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=30.81 E-value=2.2e+02 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010595 465 VAKTKARLSDLELESNRLEQIIQATQS 491 (506)
Q Consensus 465 v~e~k~RL~~LE~ess~L~k~v~~~kS 491 (506)
+.+..+|..+|...-..|+..|.++..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 182
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=30.78 E-value=3e+02 Score=28.58 Aligned_cols=46 Identities=7% Similarity=-0.006 Sum_probs=24.7
Q ss_pred hHHhcCcchhhhhhHHHHHHHH---------HHhhhhhhhHHHHHHhhHHHHHHH
Q 010595 395 DVESAQIDVDWLRNILNEISEA---------IEFSTQHQTIDAAKANCVNLLEST 440 (506)
Q Consensus 395 dLe~aGfKVDWL~kKLeEV~Ea---------re~~~~~~~leeeKd~~e~~~e~~ 440 (506)
++.++.=.+.||..|-..+.-. --+.++|+.++.+-+..+..+...
T Consensus 98 Fl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~EL~~~e~~i~~v 152 (450)
T 3r6n_A 98 IIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKL 152 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHHHHHHchHHHHHH
Confidence 3333334579999987654311 122346667666655544444443
No 183
>1ash_A Hemoglobin (OXY); oxygen storage; HET: HEM; 2.15A {Ascaris suum} SCOP: a.1.1.2
Probab=30.76 E-value=2.8e+02 Score=24.64 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcccccccCc----------ccchhHHH---HHHHHHHHHHHHHhcch
Q 010595 334 SSILQSIISRYGDIAANCN----------LESNSMRA---YYLECLCSVVQELQSTS 377 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~----------lKn~~lRs---~YMn~LlsLIetL~ksp 377 (506)
..+.+.+|+.|||+..=|. .+|+.|+. ..|+.|..+|..|....
T Consensus 28 ~~fy~~LF~~~Pe~r~~F~~~~~~~~~d~~~s~~f~~q~~rl~~aL~~~i~~lDd~~ 84 (150)
T 1ash_A 28 IDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRE 84 (150)
T ss_dssp HHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHChhHHHHhhhcccCChhhhhcCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4678899999999999885 33665554 56666777777665443
No 184
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=30.72 E-value=1.2e+02 Score=25.82 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~------lKn~~lRs---~YMn~LlsLIetL~ 374 (506)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.
T Consensus 26 ~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld 75 (142)
T 3d1k_A 26 NDALSRMIVVYPQTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKID 75 (142)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 3688999999999876664 34677776 57777777777663
No 185
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.65 E-value=2.5e+02 Score=29.80 Aligned_cols=20 Identities=5% Similarity=0.043 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 010595 460 GLKESVAKTKARLSDLELES 479 (506)
Q Consensus 460 d~~eRv~e~k~RL~~LE~es 479 (506)
++++++.++.+.|.+++.+.
T Consensus 82 ~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 186
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.59 E-value=62 Score=27.75 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHhhhhhhhccccch
Q 010595 441 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ---IIQATQSKVTKFSQKSL 501 (506)
Q Consensus 441 kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k---~v~~~kSKV~kF~~kSl 501 (506)
.+.|+.++++|.+.|+++.+ .|..+...|.+|-.......- |-.++++ +..|.+.++
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~---~i~~~~~~l~~lted~~n~~~aYVT~~Di~~-i~~f~~qtv 67 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDH---LMNICTTQLRLLSEDTDSQRLAYVTCQDLRS-IADPAEQMV 67 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCHHHHHHCEEEHHHHHT-TSCTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccccceecHHHHhc-CcCCCcCeE
Confidence 34555666678888887777 677777777777754322110 1134444 555666554
No 187
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=30.52 E-value=1e+02 Score=26.10 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcccccccCcc-----cchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCNL-----ESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----Kn~~lRs---~YMn~LlsLIetL~ 374 (506)
..+..++|+.||++-.-|.- .|+.|+. ..|+.|..+|.-|.
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld 74 (141)
T 1wmu_A 26 AEALERMFIVYPSTKTYFPHFDLHHDSEQIRHHGKKVVGALGDAVKHID 74 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCccHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHh
Confidence 47889999999998887763 5677764 57777777777653
No 188
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=30.34 E-value=1.6e+02 Score=24.47 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=5.2
Q ss_pred chhhhhhHHH
Q 010595 402 DVDWLRNILN 411 (506)
Q Consensus 402 KVDWL~kKLe 411 (506)
.|+||+.-|+
T Consensus 25 ~le~Lee~le 34 (86)
T 3nr7_A 25 TLETLEEMLE 34 (86)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4566654444
No 189
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.54 E-value=2.5e+02 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=10.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010595 431 ANCVNLLESTKKELESQMNELALKEK 456 (506)
Q Consensus 431 d~~e~~~e~~kkELEe~leeL~qKeK 456 (506)
--.++-+.+.|.||-...+-|..++.
T Consensus 43 lQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 43 NQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 33344444444443333333333333
No 190
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=29.31 E-value=3.5e+02 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=27.7
Q ss_pred chhhhccHHHHHHHHHHHhhHHhcCcchhhhhhHHH
Q 010595 376 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 411 (506)
Q Consensus 376 splqeLS~~dL~ea~~~L~dLe~aGfKVDWL~kKLe 411 (506)
.||+.|.+.++.++....+-|+..-+.+|=.+.|+.
T Consensus 141 ~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~ 176 (256)
T 1zww_A 141 DPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQG 176 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355777777888888888888888888887777764
No 191
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=29.01 E-value=63 Score=26.85 Aligned_cols=68 Identities=7% Similarity=0.089 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcccccccCcc-------cchhHH---HHHHHHHHHHHHHHhcchhhhc-cHHHHHHHHHHHhhHHhcCcc
Q 010595 334 SSILQSIISRYGDIAANCNL-------ESNSMR---AYYLECLCSVVQELQSTSLMQM-TKAKVKEMMAVLKDVESAQID 402 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-------Kn~~lR---s~YMn~LlsLIetL~ksplqeL-S~~dL~ea~~~L~dLe~aGfK 402 (506)
..+..++|+.||++..-|.- .|+.++ ...|..|..+|..|.... .+ ....|...+.. .|++
T Consensus 27 ~~fy~rlf~~~P~~~~~F~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~--~~~~~~~l~~~H~~------~gv~ 98 (143)
T 1bin_A 27 VVFYTSILEKAPAAKDLFSFLANGVDPTNPKLTGHAEKLFALVRDSAGQLKASG--TVVADAALGSVHAQ------KAVT 98 (143)
T ss_dssp HHHHHHHHHHCTTHHHHSGGGTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHS--CCCCCHHHHHHHTT------TTCC
T ss_pred HHHHHHHHHHChHHHHHhHhcccCccccCHHHHHHHHHHHHHHHHHHHHCCChH--HHHHHHHHHHHHHh------cCCC
Confidence 35677999999999987765 577774 457888888888886544 22 11125555543 3666
Q ss_pred hhhhhhH
Q 010595 403 VDWLRNI 409 (506)
Q Consensus 403 VDWL~kK 409 (506)
-+|..--
T Consensus 99 p~~f~~~ 105 (143)
T 1bin_A 99 DPQFVVV 105 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655433
No 192
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=28.96 E-value=5.9e+02 Score=27.63 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhcCcc-------hhhhhhHHHHHHHHH
Q 010595 364 ECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQID-------VDWLRNILNEISEAI 417 (506)
Q Consensus 364 n~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~aGfK-------VDWL~kKLeEV~Ear 417 (506)
-|||++.-++...| .-||-.+. .+...|.+|++..-. =.|..+|+.+.++..
T Consensus 72 AVilNV~G~~~~~p-DPLsPgE~-~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v 130 (526)
T 3iyk_A 72 AVLLNVLGSGEEIP-DPLSPGER-GIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEV 130 (526)
T ss_pred HHHHHhcccCCCCC-CCCCHhHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888 88887764 455566666654322 146666665555444
No 193
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=28.19 E-value=3.6e+02 Score=26.33 Aligned_cols=42 Identities=2% Similarity=0.127 Sum_probs=32.1
Q ss_pred HHHHHHHhhcccccccCcccchhH---HHHHHHHHHHHHHHHhcc
Q 010595 335 SILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQST 376 (506)
Q Consensus 335 ~iV~~IFeKHpDIAsnf~lKn~~l---Rs~YMn~LlsLIetL~ks 376 (506)
.+..++|+.||++-.-|..-|+.+ ..+.+..|+.++..|...
T Consensus 27 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~~~~ld~~ 71 (399)
T 4g1v_A 27 TFYKNMLTEHTELLNIFNRTNQKVGAQPNALATTVLAAAKNIDDL 71 (399)
T ss_dssp HHHHHHHHHCGGGGGTSCHHHHHTSSHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHhChhHHhhCCCccccchHHHHHHHHHHHHHHHhccCH
Confidence 568899999999999888655443 456788888888877543
No 194
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=28.16 E-value=1.1e+02 Score=26.02 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l------Kn~~lRs---~YMn~LlsLIetL~ 374 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~d~~~~n~~~~~h~~~v~~al~~~v~~ld 76 (143)
T 1xq5_A 27 SDALSRMLAVYPQTKTYFSHWKDLSPGSAPVNKHGKTIMGGIVDAVASID 76 (143)
T ss_dssp HHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHh
Confidence 47889999999998877753 4777765 57777777776553
No 195
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=28.16 E-value=94 Score=26.52 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL~ 374 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ld 79 (146)
T 2r80_B 25 AEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGGGGCCCSSHHHHHHCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChhHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999998877753 5666665 47777777777653
No 196
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=28.03 E-value=97 Score=26.24 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l------Kn~~lR---s~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.|+ ...|..|..+|..|..
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd 79 (142)
T 2zs0_B 29 NRIWEDLFANMPDARGLFSRVNGNDIDSSEFQAHSLRVLGGLDMCVASLDD 79 (142)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhChHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999887753 356555 4567777777776654
No 197
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=27.89 E-value=43 Score=28.94 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcccccccCc----c-------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCN----L-------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~----l-------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..++.++|+.||++-.-|. + .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 81 (153)
T 1lhs_A 26 QEVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRILKQKNN 81 (153)
T ss_dssp HHHHHHHHHHCHHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 5788999999999888776 3 6777776 677888888776643
No 198
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.62 E-value=71 Score=23.79 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=16.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010595 459 AGLKESVAKTKARLSDLELESNRLEQII 486 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~LE~ess~L~k~v 486 (506)
.|+.+|-.++..||..||.+...|...|
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666655554443
No 199
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.55 E-value=3.1e+02 Score=23.89 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHhhHHhcCcchhhhhhHHHHHHHHH
Q 010595 381 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 381 LS~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
+|+.-|.+=-++|.|- ||-|+.+|+|.-|..
T Consensus 16 VsnAQLDNEKsal~Yq------VdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQ------VDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 3455566656666664 599999999887766
No 200
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.47 E-value=97 Score=22.55 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 010595 442 KELESQMNELALKEKEVAGLKES 464 (506)
Q Consensus 442 kELEe~leeL~qKeKEv~d~~eR 464 (506)
.++|+.+.+....+.+|.-+++-
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333444444444443333
No 201
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=27.17 E-value=2.6e+02 Score=22.89 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 010595 464 SVAKTKARLSDLELESNRLEQ 484 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k 484 (506)
+...+..+-.+||....+|..
T Consensus 64 ~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 64 KVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444433
No 202
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=27.11 E-value=1.6e+02 Score=25.73 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 010595 403 VDWLRNILNEISEAIEFST 421 (506)
Q Consensus 403 VDWL~kKLeEV~Eare~~~ 421 (506)
++|++...+.+.+....++
T Consensus 6 ~~~~~~~~~~l~~~a~~Lk 24 (171)
T 2zvf_A 6 IEAVEEMERLLREASSILR 24 (171)
T ss_dssp THHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4677777777777776665
No 203
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=26.99 E-value=1.3e+02 Score=25.69 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHh--cCcc
Q 010595 334 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES--AQID 402 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~------lKn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~--aGfK 402 (506)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.. |..+...|...=. .|++
T Consensus 27 ~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~H~~~~~V~ 96 (143)
T 3bom_A 27 EQALSRMLVVYPQTKAYFSHWASVAPGSAPVKKHGITIMNQIDDCVGHMDD----------LFGFLTKLSELHATKLRVD 96 (143)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSSCCSTTCHHHHHHHHHHHHHHHHHHTTTTC----------HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHHHHHHhCCC
Confidence 3688999999999876664 34677775 467777777665532 5555555555433 3444
Q ss_pred hh
Q 010595 403 VD 404 (506)
Q Consensus 403 VD 404 (506)
-+
T Consensus 97 p~ 98 (143)
T 3bom_A 97 PT 98 (143)
T ss_dssp TT
T ss_pred Hh
Confidence 33
No 204
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=26.97 E-value=1.4e+02 Score=27.50 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=16.1
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDW 405 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDW 405 (506)
+-.|.++|..+. .+..|++.||-|+=
T Consensus 43 R~y~~~~~~~l~-~i~~l~~~g~~l~~ 68 (278)
T 1r8e_A 43 RYYTDSQLIHLD-LIKSLKYIGTPLEE 68 (278)
T ss_dssp EEEETGGGGHHH-HHHHHHHTTCCHHH
T ss_pred cccCHHHHHHHH-HHHHHHHCCCCHHH
Confidence 345666665544 45666888887653
No 205
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=26.96 E-value=3.8e+02 Score=24.74 Aligned_cols=137 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccccccCcccchhHHHH--------------------HHHHHHHHHHHHhcchhhhccHHHHHHHHHHH
Q 010595 334 SSILQSIISRYGDIAANCNLESNSMRAY--------------------YLECLCSVVQELQSTSLMQMTKAKVKEMMAVL 393 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lKn~~lRs~--------------------YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L 393 (506)
...|+.++.+|-.+-.++....+.+... .|+.|...-..|+... .--...|.++....
T Consensus 141 l~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~--~~R~~~L~~~~~~~ 218 (322)
T 1u4q_A 141 LTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA--AARGQRLEESLEYQ 218 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred hhHHhcCcchhhhhhHHHHH---------HHHHHhhhhhhhHHHHHHhhHHHHHHH--------------HHHHHHHHHH
Q 010595 394 KDVESAQIDVDWLRNILNEI---------SEAIEFSTQHQTIDAAKANCVNLLEST--------------KKELESQMNE 450 (506)
Q Consensus 394 ~dLe~aGfKVDWL~kKLeEV---------~Eare~~~~~~~leeeKd~~e~~~e~~--------------kkELEe~lee 450 (506)
.++.++.-=..||..+-..+ ..+..++++|..+..+-+.....+..+ -..|...+..
T Consensus 219 qf~~~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~ 298 (322)
T 1u4q_A 219 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKG 298 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 010595 451 LALKEKEVAGLKESVAKTKARLSDL 475 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~e~k~RL~~L 475 (506)
|..+-+.+.+ .+.+-+.||.+.
T Consensus 299 l~~rw~~l~~---~~~~R~~~L~~a 320 (322)
T 1u4q_A 299 LKGKVSDLEK---AAAQRKAKLDEN 320 (322)
T ss_dssp HHHHHHHHHH---HHHHHHHHHTC-
T ss_pred HHHHHHHHHH---HHHHHHHHHhhc
No 206
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.89 E-value=3e+02 Score=23.61 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.1
Q ss_pred hhhhhhHHHHHH
Q 010595 403 VDWLRNILNEIS 414 (506)
Q Consensus 403 VDWL~kKLeEV~ 414 (506)
++-|+..|..+.
T Consensus 7 ~e~lre~l~~le 18 (97)
T 2eqb_B 7 YNQLKEDYNTLK 18 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 207
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=26.87 E-value=3.6e+02 Score=24.43 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=16.0
Q ss_pred HHHHHHHHH-HHhhhhHHHHHHHhhhhhhhc
Q 010595 467 KTKARLSDL-ELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 467 e~k~RL~~L-E~ess~L~k~v~~~kSKV~kF 496 (506)
+.+.+|.-+ +.-..++.+.+..|+-|+.-+
T Consensus 132 elR~kl~P~~eeL~~~~~~~~eeLr~kL~p~ 162 (165)
T 1gs9_A 132 ELRVRLASHLRKLRKRLLRDADDLQKRLAVY 162 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 555555443 233455555666666666543
No 208
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=26.77 E-value=97 Score=26.56 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcccccccCc----c-------cchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCN----L-------ESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~----l-------Kn~~lRs---~YMn~LlsLIetL~ 374 (506)
..++.++|+.||++-.-|. + .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 3d1k_B 25 PKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSSHHHHHHCHHHHHHHHHHHHHTHHHHHTGG
T ss_pred HHHHHHHHHHCHhHHHHhcccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999987775 2 3566665 47777777777553
No 209
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.67 E-value=3.9e+02 Score=24.87 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=37.9
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhhhhHHHHH
Q 010595 418 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVA-------KTKARLSDLELESNRLEQII 486 (506)
Q Consensus 418 e~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~-------e~k~RL~~LE~ess~L~k~v 486 (506)
++-++++.+...++.+++.+-.+-..|+.+-....+-..-+.|...||. .++.|+..++.+.-.|...|
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777666666666665555555554444433333 33444444444444444443
No 210
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.42 E-value=97 Score=31.94 Aligned_cols=14 Identities=7% Similarity=0.021 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHHHH
Q 010595 404 DWLRNILNEISEAI 417 (506)
Q Consensus 404 DWL~kKLeEV~Ear 417 (506)
+=|+.-|+++.+..
T Consensus 6 ~~l~~el~~~~~~~ 19 (412)
T 3u06_A 6 AALSTEVVHLRQRT 19 (412)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 211
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=26.28 E-value=1.1e+02 Score=26.21 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHH
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQEL 373 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL 373 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~l 78 (147)
T 3bom_B 25 PQALARLLIVSPWTQRHFSTFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNL 78 (147)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGSCCSSHHHHHTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCccHHHHccccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhH
Confidence 57899999999998877743 4566654 5667777776655
No 212
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=26.26 E-value=3.2e+02 Score=30.31 Aligned_cols=76 Identities=12% Similarity=0.264 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhHH----hcCcchhhhhhHHHHHHHHHHhhhh-----hhhHHHHHHhhHHHHHH--HHHHHHHHHHHH
Q 010595 383 KAKVKEMMAVLKDVE----SAQIDVDWLRNILNEISEAIEFSTQ-----HQTIDAAKANCVNLLES--TKKELESQMNEL 451 (506)
Q Consensus 383 ~~dL~ea~~~L~dLe----~aGfKVDWL~kKLeEV~Eare~~~~-----~~~leeeKd~~e~~~e~--~kkELEe~leeL 451 (506)
..|++.+..+|++|+ ++|++-+|-. |++-+-.+.--++- ...+...++.+++-+.. ..+||...+..|
T Consensus 714 NkDFSKv~etlk~L~~SvKDlgINqEv~d-KIDNLNQAlsefKnGKngDFSkVeQAlsDLknSkkdLsrNQELtqKVdNL 792 (876)
T 4dvy_P 714 NKDFSKAEETLKALKGSVKDLGINPEWIS-KVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNL 792 (876)
T ss_dssp -------CCHHHHHHHHHHHSTTCHHHHH-HHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhHHHHhccCHHHHH-HHHHHHHHHHHhcCCCccCchhhhhhhhHHHhhHHhhhhhHHHHHHHHHH
Confidence 346666666666655 6899888754 44444333321111 33444444444433333 467777778888
Q ss_pred HHHHHHHH
Q 010595 452 ALKEKEVA 459 (506)
Q Consensus 452 ~qKeKEv~ 459 (506)
.|...+.+
T Consensus 793 NQAVsEaK 800 (876)
T 4dvy_P 793 NQAVSVAK 800 (876)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766555
No 213
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=26.07 E-value=2.8e+02 Score=24.98 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=4.8
Q ss_pred HHHHHhcch
Q 010595 369 VVQELQSTS 377 (506)
Q Consensus 369 LIetL~ksp 377 (506)
.++.|+++.
T Consensus 30 ~ve~l~~se 38 (185)
T 3r2p_A 30 YVSQFEGSA 38 (185)
T ss_dssp HHHHHHHSH
T ss_pred HHHHHHcch
Confidence 455555555
No 214
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=25.87 E-value=4.1e+02 Score=24.75 Aligned_cols=18 Identities=6% Similarity=0.189 Sum_probs=12.4
Q ss_pred hccHHHHHHHHHHHhhHH
Q 010595 380 QMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 380 eLS~~dL~ea~~~L~dLe 397 (506)
.||++++..|......+.
T Consensus 118 ~Ls~eeI~~m~~~a~~~~ 135 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEANA 135 (219)
T ss_dssp SCCHHHHHHHHHHHHHTH
T ss_pred cccHHHHHHHHHHHHHhh
Confidence 588888888776655543
No 215
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.69 E-value=1.2e+02 Score=24.51 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 010595 441 KKELESQMNEL 451 (506)
Q Consensus 441 kkELEe~leeL 451 (506)
.++||.++.+|
T Consensus 31 i~~LE~~v~~l 41 (70)
T 1gd2_E 31 LKALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 216
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=25.49 E-value=2.9e+02 Score=23.81 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcccccccCc----ccchhHHHH---HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHHhc
Q 010595 334 SSILQSIISRYGDIAANCN----LESNSMRAY---YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA 399 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~----lKn~~lRs~---YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe~a 399 (506)
..++.++|+.||++-.-|. ..|+.++.- .|..|..+|..|... +.|..+...|...=..
T Consensus 33 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~aH~~~v~~~l~~~v~~ldd~-------~~l~~~l~~L~~~H~~ 98 (145)
T 2zs0_D 33 VAIFDVFFTSSGVSPSMFPGGGDSSSAEFLAQVSRVISGADIAINSLTNR-------ATCDSLLSHLNAQHKA 98 (145)
T ss_dssp HHHHHHHHHHHCCCGGGSGGGGCTTSHHHHHHHHHHHHHHHHHHHTTTSH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHhcc
Confidence 5789999999999988774 457777654 445555555555322 3455555555555443
No 217
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.29 E-value=2.2e+02 Score=26.34 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010595 462 KESVAKTKARLSDLEL 477 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~ 477 (506)
.++|.+....+.+|..
T Consensus 112 eakI~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 112 TAKINAVAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555543
No 218
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=25.21 E-value=88 Score=26.40 Aligned_cols=41 Identities=7% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcccccccCc-----ccchhHHH---HHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~-----lKn~~lRs---~YMn~LlsLIetL~ 374 (506)
..+..++|+.||++-.-|. ..|+.++. ..|..|..+|..|.
T Consensus 26 ~~~y~rlF~~~P~~~~~F~~~d~~~~~~~~~~h~~~v~~al~~~v~~ld 74 (141)
T 2w72_C 26 AEAYERMFLSFPTTKTYFPHFDLSHGSAQVKGQGKKVADALTNAVAHVD 74 (141)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHh
Confidence 4788999999999988776 34566654 77778888777664
No 219
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.14 E-value=2.2e+02 Score=21.45 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=8.8
Q ss_pred HHHHHHHHHhHHHHHH
Q 010595 451 LALKEKEVAGLKESVA 466 (506)
Q Consensus 451 L~qKeKEv~d~~eRv~ 466 (506)
++-.++|++.+|.+|+
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445666666555543
No 220
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.11 E-value=3.5e+02 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010595 464 SVAKTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 464 Rv~e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
+|.+..+++..-|.....|-+.+.-+
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443343333333333333
No 221
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=25.05 E-value=98 Score=26.59 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhH
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV 396 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dL 396 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.. |..+...|...
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~ 91 (146)
T 1out_B 25 PLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMGN----------ILATYKSLSET 91 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTHHHHHHTTTC----------HHHHTHHHHHH
T ss_pred HHHHHHHhhcCHhHHHHHHHhCCCCcHHHhccCHHHHHHHHHHHHHHHHHHHhHhh----------HHHHHHHHHHH
Confidence 57899999999999887753 3666665 566677776665532 45555555544
No 222
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=25.04 E-value=49 Score=32.99 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhHHHHHH
Q 010595 403 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNEL----------------ALKEKEVAGLKESVA 466 (506)
Q Consensus 403 VDWL~kKLeEV~Eare~~~~~~~leeeKd~~e~~~e~~kkELEe~leeL----------------~qKeKEv~d~~eRv~ 466 (506)
|+||..--+++.+...-..-.++++..+......+..-..+|.++|..+ .+..+.+.+.|.++.
T Consensus 45 ~~~~~~~a~~~~eql~~s~l~kel~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~ 124 (307)
T 2l7b_A 45 LRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLV 124 (307)
T ss_dssp HHHTCCCSTHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHH-HHHHhhhhHHHHHHHhhhhhhh
Q 010595 467 ----KTKARLS-DLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 467 ----e~k~RL~-~LE~ess~L~k~v~~~kSKV~k 495 (506)
+++.+|. +++.-..+|......++.+|++
T Consensus 125 Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~ 158 (307)
T 2l7b_A 125 QYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLR 158 (307)
T ss_dssp HHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 223
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=25.03 E-value=1.3e+02 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=14.4
Q ss_pred HHHHHHh-HHHHHHHHHHHHHHHHH
Q 010595 454 KEKEVAG-LKESVAKTKARLSDLEL 477 (506)
Q Consensus 454 KeKEv~d-~~eRv~e~k~RL~~LE~ 477 (506)
+-+.|.+ +-.|+.+|-.||-+||.
T Consensus 21 kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 21 KFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3334444 45577788888877763
No 224
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=24.99 E-value=3.4e+02 Score=28.67 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=14.1
Q ss_pred hhccHHHHHHHHHHHhhHH
Q 010595 379 MQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe 397 (506)
..||++++..|...+..+.
T Consensus 505 ~~ls~~~i~~~~~~~~~~~ 523 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAEANA 523 (605)
T ss_dssp SSCCHHHHHHHHHHHHHSH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 4688888888877766654
No 225
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=24.79 E-value=5e+02 Score=25.38 Aligned_cols=62 Identities=8% Similarity=0.273 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010595 433 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 494 (506)
Q Consensus 433 ~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 494 (506)
.+.++..+.-+|...-+-+..-++.+.+..-|+....+.+.-|+.+...|..+|.+..+++.
T Consensus 82 He~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Is 143 (242)
T 3c9i_A 82 HEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNIS 143 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchh
Confidence 34444455555555544555555555565556666666666666655555555555555443
No 226
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=24.63 E-value=2.5e+02 Score=21.95 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=18.5
Q ss_pred HHHHHHHHhhHHhcCcchhhhhhHHHHHHHHH
Q 010595 386 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI 417 (506)
Q Consensus 386 L~ea~~~L~dLe~aGfKVDWL~kKLeEV~Ear 417 (506)
|.++...|...+..|-.++=++..|.+.....
T Consensus 18 L~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~ 49 (119)
T 3uun_A 18 LLSAEDTLQAQGEISNDVEVVKDQFHTHEGYM 49 (119)
T ss_dssp HHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34455556666666776666666655544443
No 227
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.11 E-value=44 Score=27.82 Aligned_cols=29 Identities=34% Similarity=0.383 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010595 457 EVAGLKESVAKTKARLSDLELESNRLEQI 485 (506)
Q Consensus 457 Ev~d~~eRv~e~k~RL~~LE~ess~L~k~ 485 (506)
||.-+|++|.+..+|..+||.|.+-|...
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446778888999999999988887654
No 228
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=24.02 E-value=3.4e+02 Score=23.17 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~ 81 (151)
T 1a6m_A 26 QDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGH 81 (151)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCcHHHhcCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 57889999999998877642 4556665 578888888887754
No 229
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=23.89 E-value=3.4e+02 Score=26.37 Aligned_cols=44 Identities=5% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcccccccCcccch---hHHHHHHHHHHHHHHHHhcch
Q 010595 334 SSILQSIISRYGDIAANCNLESN---SMRAYYLECLCSVVQELQSTS 377 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lKn~---~lRs~YMn~LlsLIetL~ksp 377 (506)
..+..++|+.||++-.-|.--|+ .-....++.|..++.-|....
T Consensus 26 ~~fy~~lf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~~~~ld~~~ 72 (396)
T 1gvh_A 26 AHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLP 72 (396)
T ss_dssp HHHHHHHHHHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHTTGGGGG
T ss_pred HHHHHHHHHhChhHHhhCCCcchhhHHHHHHHHHHHHHHHHhccChH
Confidence 35678899999999998887554 346778888888887775433
No 230
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.63 E-value=2.3e+02 Score=23.90 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhHHh
Q 010595 383 KAKVKEMMAVLKDVES 398 (506)
Q Consensus 383 ~~dL~ea~~~L~dLe~ 398 (506)
-.++..+..+|..|..
T Consensus 31 i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 31 ISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 3467777777777764
No 231
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=23.39 E-value=3.7e+02 Score=23.45 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010595 429 AKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 488 (506)
Q Consensus 429 eKd~~e~~~e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~ 488 (506)
+-+...+.+..-..-|..|...+..-.+||+.+..+++++....--||.+..+|.+.|..
T Consensus 49 aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 49 AIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 232
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.34 E-value=2.6e+02 Score=26.49 Aligned_cols=20 Identities=0% Similarity=-0.052 Sum_probs=11.0
Q ss_pred HHHhhhhhhhccccchhhhc
Q 010595 486 IQATQSKVTKFSQKSLADEI 505 (506)
Q Consensus 486 v~~~kSKV~kF~~kSl~D~l 505 (506)
+..++..+.+..-.+.+||.
T Consensus 144 l~~a~~~l~~~~i~AP~~G~ 163 (341)
T 3fpp_A 144 LDTAKTNLDYTRIVAPMAGE 163 (341)
T ss_dssp HTTTTTTTTSSEEECSSSEE
T ss_pred HHHHHHhhhCCEEECCCCeE
Confidence 33455555555556666654
No 233
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.28 E-value=99 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 465 VAKTKARLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 465 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
+...+.++..|+++..+|.+.+..+..++++
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 234
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=23.02 E-value=3.1e+02 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=20.4
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhhh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLRN 408 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~k 408 (506)
..|+.++...+...|.+++ +||..
T Consensus 32 ~kl~~eek~~i~~~i~e~~------~wL~~ 55 (113)
T 3lof_A 32 GKISEADKKKVLDKCQEVI------SWLDA 55 (113)
T ss_dssp TTBCHHHHHHHHHHHHHHH------HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH------HHHHc
Confidence 4689999999999999998 89865
No 235
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=23.00 E-value=2.5e+02 Score=30.11 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 468 TKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 468 ~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
++++|.+|+.+...++..+..+-..|-+...
T Consensus 110 ~~~~i~~~e~~~~~~~~~~~~~l~~iPN~~~ 140 (522)
T 3vbb_A 110 IDEAILKCDAERIKLEAERFENLREIGNLLH 140 (522)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHGGGSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4567777777777777766666555555433
No 236
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=22.98 E-value=4.6e+02 Score=24.30 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=14.2
Q ss_pred hccHHHHHHHHHHHhhHHh
Q 010595 380 QMTKAKVKEMMAVLKDVES 398 (506)
Q Consensus 380 eLS~~dL~ea~~~L~dLe~ 398 (506)
.||++++..|...+..+..
T Consensus 115 ~Ls~eei~~~~~~~~~~~~ 133 (227)
T 1u00_A 115 GLTDSEIASMIKDSMSYAE 133 (227)
T ss_dssp CCCHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHhhhc
Confidence 4888888888777766654
No 237
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=22.89 E-value=2.1e+02 Score=24.42 Aligned_cols=54 Identities=7% Similarity=0.204 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcccccccCcc-------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhhHH
Q 010595 334 SSILQSIISRYGDIAANCNL-------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-------Kn~~lRs---~YMn~LlsLIetL~ksplqeLS~~dL~ea~~~L~dLe 397 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|.-|.. |..+...|...=
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~H 90 (144)
T 1spg_A 27 AEALGRMLVSFPQTKIYFSEWGQDLGPQTPQVRNHGAVIMAAVGKAVKSIDN----------LVGGLSQLSELH 90 (144)
T ss_dssp HHHHHHHHHHCGGGGGGGTTSCSCSSTTSHHHHHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHHH
Confidence 57889999999998776642 3555544 577777777775532 555555555543
No 238
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=22.88 E-value=2.5e+02 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010595 461 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 498 (506)
Q Consensus 461 ~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 498 (506)
....|..=-..|.++..+..++.-+|...-.++.+|..
T Consensus 49 mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 49 MGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666677777777777777777777777777764
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.85 E-value=3.8e+02 Score=27.11 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=31.0
Q ss_pred hhhccHHHHHHHHHHHhhHHh---cCcchhhhhhHHHHHHHHHH
Q 010595 378 LMQMTKAKVKEMMAVLKDVES---AQIDVDWLRNILNEISEAIE 418 (506)
Q Consensus 378 lqeLS~~dL~ea~~~L~dLe~---aGfKVDWL~kKLeEV~Eare 418 (506)
++.|.+.|+..|...|..|++ .+.++.|..+.|..|...-.
T Consensus 24 ~~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~ 67 (445)
T 4b4t_P 24 IDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLA 67 (445)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHH
Confidence 356777899999999999886 48999999999988876543
No 240
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=22.82 E-value=17 Score=25.99 Aligned_cols=7 Identities=57% Similarity=1.644 Sum_probs=6.1
Q ss_pred CCcchhh
Q 010595 74 NPYHECG 80 (506)
Q Consensus 74 NPyHeC~ 80 (506)
-|||||+
T Consensus 7 rpfheca 13 (36)
T 2jyp_A 7 RPFHECA 13 (36)
T ss_dssp TTTTCCS
T ss_pred Cccchhe
Confidence 5999997
No 241
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.61 E-value=5e+02 Score=27.66 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=10.6
Q ss_pred CCCCCcccccccccccccc
Q 010595 164 GTPLTPRAVDKVAVGGQKA 182 (506)
Q Consensus 164 ~~p~~~~~~~~~~~~~~~~ 182 (506)
=.|.-|.-+-||+.|=|++
T Consensus 136 lp~~iP~lLvNGs~GIavG 154 (470)
T 3ilw_A 136 LPSRFPNLLANGSGGIAVG 154 (470)
T ss_dssp CCCSSCHHHHHCEECSSTT
T ss_pred ccccccHHHhcCCCccccc
Confidence 3445566677765554444
No 242
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=22.56 E-value=4.1e+02 Score=28.02 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=13.5
Q ss_pred hhccHHHHHHHHHHHhhHH
Q 010595 379 MQMTKAKVKEMMAVLKDVE 397 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe 397 (506)
..||++++..|......+.
T Consensus 505 ~~ls~~ei~~~~~~~~~~~ 523 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEANA 523 (605)
T ss_dssp CSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhH
Confidence 4688888888876665543
No 243
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=22.46 E-value=3.1e+02 Score=22.26 Aligned_cols=23 Identities=9% Similarity=0.394 Sum_probs=19.6
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchhhhh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVDWLR 407 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVDWL~ 407 (506)
..|+.++...+...|.+|+ +||.
T Consensus 27 ~kl~~~ek~~i~~~i~~l~------~~L~ 49 (113)
T 1ud0_A 27 GKINDEDKQKILDKCNEII------SWLD 49 (113)
T ss_dssp TTSCHHHHHHHHHHHHHHH------HHHH
T ss_pred ccCCHHHHHHHHHHHHHHH------HHHH
Confidence 4689999999999999888 6886
No 244
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=22.23 E-value=4.5e+02 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHHHhhhhH
Q 010595 449 NELALKEKEVAGL-KESVAKTKARLSDLELESNRL 482 (506)
Q Consensus 449 eeL~qKeKEv~d~-~eRv~e~k~RL~~LE~ess~L 482 (506)
+.|.+|-...++- ...+.++.+||.+-+.....+
T Consensus 97 EkL~~KME~~kEnReA~laal~erLkek~kha~eV 131 (143)
T 3ryc_E 97 EKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV 131 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555552 345667777777655444443
No 245
>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} SCOP: a.1.1.2 PDB: 1v4u_B* 1v4w_B*
Probab=22.16 E-value=1e+02 Score=26.37 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHH
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQEL 373 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL 373 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~s~~~~~h~~~v~~al~~~v~~l 78 (146)
T 1v4x_B 25 PKALARCLIVYPWTQRYFGAYGDLSTPDAIKGNAKIAAHGVKVLHGLDRAVKNM 78 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSCCCSSHHHHHTCHHHHHHHHHHHHTTHHHHHCT
T ss_pred HHHHHHHHHHCHhHHHHHHhhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999998877742 4567765 5667777776655
No 246
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=22.11 E-value=1.3e+02 Score=25.64 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHH
Q 010595 334 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQEL 373 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l------Kn~~lRs---~YMn~LlsLIetL 373 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~f~~~~~~n~~~~~h~~~v~~al~~~v~~l 74 (141)
T 1cg5_A 26 ADALARLFELHPQTKTYFSKFSGFEACNEQVKKHGKRVMNALADATHHL 74 (141)
T ss_dssp HHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHCchHHHHhHHhCCCCCCCHhHHHHHHHHHHHHHHHHHhH
Confidence 57899999999998776643 3777776 4566666665543
No 247
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=22.00 E-value=3.6e+02 Score=22.80 Aligned_cols=67 Identities=6% Similarity=0.070 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcccccccCcc---------cchhHH---HHHHHHHHHHHHHHhcchhhhc-----cHHHHHHHHHHHhhH
Q 010595 334 SSILQSIISRYGDIAANCNL---------ESNSMR---AYYLECLCSVVQELQSTSLMQM-----TKAKVKEMMAVLKDV 396 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l---------Kn~~lR---s~YMn~LlsLIetL~ksplqeL-----S~~dL~ea~~~L~dL 396 (506)
..+..++|+.||++-.-|.. .|+.++ ..+|..|..+|..|.... .| .-.+|...+..
T Consensus 34 ~~fy~rlf~~~P~~k~~F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~--~l~~~~~~l~~Lg~~H~~---- 107 (162)
T 2oif_A 34 LRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAG--KITVRETTLKRLGGTHLK---- 107 (162)
T ss_dssp HHHHHHHHHHCGGGGGGCHHHHTCCSCGGGCHHHHHHHHHHHHHHHHHHHTHHHHT--SCCCSSSCHHHHHHHHHH----
T ss_pred HHHHHHHHHHChHHHHhcccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCHH--hhhhHHHHHHHHHHHHHh----
Confidence 46788899999999988864 678775 457888888888876533 23 34555555554
Q ss_pred HhcCcchhhhhh
Q 010595 397 ESAQIDVDWLRN 408 (506)
Q Consensus 397 e~aGfKVDWL~k 408 (506)
.||+-+|...
T Consensus 108 --~gV~p~~f~~ 117 (162)
T 2oif_A 108 --YGVADGHFEV 117 (162)
T ss_dssp --TTCCHHHHHH
T ss_pred --cCCCHHHHHH
Confidence 2566555543
No 248
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=21.79 E-value=2e+02 Score=24.42 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcccccccCc-----ccchhHHH---HHHHHHHHHHHHH
Q 010595 334 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQEL 373 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~-----lKn~~lRs---~YMn~LlsLIetL 373 (506)
..+..++|+.||++-.-|. ..|+.|+. ..|+.|..+|..|
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~al~~~v~~l 73 (141)
T 2r80_A 26 GEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHI 73 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCchHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4788999999998776664 35666665 5677777777655
No 249
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.78 E-value=1.6e+02 Score=25.71 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 010595 444 LESQMNELALKEKEVAGLKESVAKTKARLSDLELES 479 (506)
Q Consensus 444 LEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~es 479 (506)
+-...++|++...++.++.+.+.+++..+..||.++
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 250
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=21.76 E-value=94 Score=24.97 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHH---HHhhhhHHHHHHHhhhhhhhcccc
Q 010595 459 AGLKESVAKTKARLSDL---ELESNRLEQIIQATQSKVTKFSQK 499 (506)
Q Consensus 459 ~d~~eRv~e~k~RL~~L---E~ess~L~k~v~~~kSKV~kF~~k 499 (506)
++++.|+.+++.||..| |.+....++-|....|-+.-|.|+
T Consensus 5 aefkqrlaaiktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35667788888887765 455566677777777777777654
No 251
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=21.54 E-value=1.2e+02 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHH
Q 010595 334 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQEL 373 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-----------Kn~~lRs---~YMn~LlsLIetL 373 (506)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~l 78 (146)
T 2aa1_B 25 PATLARCLVVYPWTQRYFGKFGNLYNAAAIAQNAMVSKHGTTILNGLDRAVKNM 78 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTTHHHHHCT
T ss_pred HHHHHHHHHHCccHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhH
Confidence 57899999999998777642 3466654 5666777766655
No 252
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=21.40 E-value=2.7e+02 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 010595 465 VAKTKARLSDLELESNRL 482 (506)
Q Consensus 465 v~e~k~RL~~LE~ess~L 482 (506)
..+++.++.+|+.-...|
T Consensus 56 ~~~i~~~~~~L~~~~~~i 73 (113)
T 1ud0_A 56 KEEFEHQQKELEKVCNPI 73 (113)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666555544444
No 253
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.12 E-value=87 Score=23.49 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=13.4
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhh
Q 010595 471 RLSDLELESNRLEQIIQATQSKVTK 495 (506)
Q Consensus 471 RL~~LE~ess~L~k~v~~~kSKV~k 495 (506)
.|..||-+...|++.+..+|||+.-
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666543
No 254
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.04 E-value=2.4e+02 Score=28.99 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010595 438 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 497 (506)
Q Consensus 438 e~~kkELEe~leeL~qKeKEv~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 497 (506)
+.++.++++..++....|+.-.+ -=+++.+=.+-+-+|+-+|..+|-|++.|.
T Consensus 13 ~~~~~~~~~vq~kA~~~E~~Yn~-------~~dKmeqE~lrRRkLENSIdElKG~IRcFA 65 (333)
T 4etp_B 13 AALEKEIAALEKEISKQEKFYND-------TYNTVCKELLRSRRLENSIIEQKGTMRVYA 65 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHhcCcEEEEE
Confidence 34444444443344444443333 333444444667788899999999999993
No 255
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=20.87 E-value=3.4e+02 Score=22.07 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=17.9
Q ss_pred hhccHHHHHHHHHHHhhHHhcCcchh
Q 010595 379 MQMTKAKVKEMMAVLKDVESAQIDVD 404 (506)
Q Consensus 379 qeLS~~dL~ea~~~L~dLe~aGfKVD 404 (506)
+-.+.+||..+..+ ..|.+.||.++
T Consensus 39 R~Y~~~dl~~l~~I-~~l~~~G~~l~ 63 (109)
T 1r8d_A 39 RLYSDADLERLQQI-LFFKEIGFRLD 63 (109)
T ss_dssp EEBCHHHHHHHHHH-HHHHHTTCCHH
T ss_pred eeeCHHHHHHHHHH-HHHHHCCCCHH
Confidence 45888888876554 46788898654
No 256
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=20.77 E-value=91 Score=22.16 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHh
Q 010595 467 KTKARLSDLELESNRLEQIIQAT 489 (506)
Q Consensus 467 e~k~RL~~LE~ess~L~k~v~~~ 489 (506)
-|-+||.+.|...+.+++.+..+
T Consensus 7 Sm~~Rl~kVE~qv~~md~KLd~l 29 (33)
T 2ovc_A 7 SMMGRVVKVEKQVQSIEHKLDLL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999998888877766544
No 257
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.61 E-value=4.1e+02 Score=22.83 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010595 434 VNLLESTKKELESQMNELAL 453 (506)
Q Consensus 434 e~~~e~~kkELEe~leeL~q 453 (506)
+...+..+..|+.+|++|..
T Consensus 42 R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 42 RTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777653
No 258
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.50 E-value=3.7e+02 Score=22.30 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010595 462 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 496 (506)
Q Consensus 462 ~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 496 (506)
...|.+++..|-.+..+..+|.--+..+..=+..|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555555555444
No 259
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=20.44 E-value=1.7e+02 Score=24.96 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcccccccCcc-cch---hHHHHHHHHHHHHHHHHh
Q 010595 334 SSILQSIISRYGDIAANCNL-ESN---SMRAYYLECLCSVVQELQ 374 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l-Kn~---~lRs~YMn~LlsLIetL~ 374 (506)
..++.++|+.||++-.-|.- .++ .=....|+.|...|.-|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~d~~~~~h~~~v~~al~~~v~~ld 69 (136)
T 1gcv_B 25 TQALDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMD 69 (136)
T ss_dssp HHHHHHHHHHSGGGGGGTTTCTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHhhcccCCCccHHHHHHHHHHHHHHHhHh
Confidence 47899999999998887754 344 334567888888887664
No 260
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=20.36 E-value=4e+02 Score=22.60 Aligned_cols=42 Identities=10% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcccccccCc-c-------cchhHHH---HHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCN-L-------ESNSMRA---YYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~-l-------Kn~~lRs---~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|. + .|+.++. ..|..|..+|..|..
T Consensus 34 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd 86 (146)
T 3g46_A 34 VALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDN 86 (146)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999999987776 3 4566655 578888888887743
No 261
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=20.31 E-value=2e+02 Score=24.68 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcccccccCcc--------cchhHH---HHHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNL--------ESNSMR---AYYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~l--------Kn~~lR---s~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.- .|+.++ ...|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~~H~~~v~~al~~~v~~ldd 87 (150)
T 4hrt_A 35 LMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDD 87 (150)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 36889999999999776653 244553 4688888888888754
No 262
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.22 E-value=1e+02 Score=21.64 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 010595 455 EKEVAGLKESVAKTKARLSDLEL 477 (506)
Q Consensus 455 eKEv~d~~eRv~e~k~RL~~LE~ 477 (506)
|+++..+..-+.++.+||.+||+
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556666666664
No 263
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=20.21 E-value=1.5e+02 Score=28.90 Aligned_cols=42 Identities=5% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcccccccCcccchhH---HHHHHHHHHHHHHHHhc
Q 010595 334 SSILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQS 375 (506)
Q Consensus 334 v~iV~~IFeKHpDIAsnf~lKn~~l---Rs~YMn~LlsLIetL~k 375 (506)
..+..++|+.||++-.-|.--++.+ ....++.|..+|.-|..
T Consensus 26 ~~fy~rlf~~~P~~~~~F~~~~~~~~~~~~~~~~~l~~~~~~ld~ 70 (403)
T 1cqx_A 26 KCFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIED 70 (403)
T ss_dssp HHHHHHHHHHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhChHHHhhCcccchhhHHHHHHHHHHHHHHHHhccC
Confidence 3677889999999999888765544 66888888888887754
No 264
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.12 E-value=2.1e+02 Score=32.84 Aligned_cols=84 Identities=7% Similarity=0.099 Sum_probs=50.3
Q ss_pred EEeccEEeecchHHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcc-------------------hhhhcc
Q 010595 322 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQST-------------------SLMQMT 382 (506)
Q Consensus 322 VdVnGFqVlpSqv~iV~~IFeKHpDIAsnf~lKn~~lRs~YMn~LlsLIetL~ks-------------------plqeLS 382 (506)
|.-.||.++-.+.+++++.----|++... ....|.+.-.+|-. |.-. -|.++-
T Consensus 687 i~r~Gfp~r~~~~~F~~RY~~L~~~~~~~----~~d~~~~~~~ll~~----~~~~~~~~~~G~tkVF~r~~~l~~LE~~R 758 (1010)
T 1g8x_A 687 ITRKGFPNRIIYADFVKRYYLLAPNVPRD----AEDSQKATDAVLKH----LNIDPEQYRFGITKIFFRAGQLARIEEAR 758 (1010)
T ss_dssp HHTTSCCEEEEHHHHHHHHGGGSTTCCTT----CSCHHHHHHHHHHH----TTCCGGGEEECSSEEEECTTHHHHHHHHH
T ss_pred HHHhCCcccccHHHHHHHHHHhCCCCCcC----CCCHHHHHHHHHHH----cCCCccceeehhhhhhhcccchhHHHHHH
Confidence 45578999999988887643333332222 12234443322222 2111 135566
Q ss_pred HHHHHHHHHHHhhHHhcCcchhhhhhHHHHH
Q 010595 383 KAKVKEMMAVLKDVESAQIDVDWLRNILNEI 413 (506)
Q Consensus 383 ~~dL~ea~~~L~dLe~aGfKVDWL~kKLeEV 413 (506)
...|..+...+.+...+.--+.|++.+...+
T Consensus 759 ~~~l~~~~~~iQY~~~a~~L~~WIr~kqa~l 789 (1010)
T 1g8x_A 759 EQRLGSEQTKSDYLKRANELVQWINDKQASL 789 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888998877643
No 265
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=20.08 E-value=3.6 Score=38.20 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010595 458 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 506 (506)
Q Consensus 458 v~d~~eRv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 506 (506)
+.++.+++.++++++.++..+..++.++..-=+....+|...+|+-+||
T Consensus 28 ~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LL 76 (177)
T 3a6m_A 28 LKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALL 76 (177)
T ss_dssp TTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666666666666666666666655555543
Done!