Query 010596
Match_columns 506
No_of_seqs 382 out of 1653
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 4.9E-85 1.7E-89 704.1 35.2 367 133-506 3-395 (485)
2 2dc0_A Probable amidase; struc 100.0 9.9E-85 3.4E-89 692.7 33.2 345 136-506 1-347 (434)
3 1m22_A Peptide amidase, PAM; e 100.0 1.4E-83 4.8E-88 695.6 34.2 370 131-505 6-406 (503)
4 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.3E-82 4.4E-87 683.6 32.3 362 133-506 2-388 (478)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 2.8E-82 9.7E-87 679.6 26.5 355 136-506 1-378 (471)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 4E-81 1.4E-85 675.0 32.2 358 132-506 5-380 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 4.7E-80 1.6E-84 664.0 21.9 350 132-505 6-380 (476)
8 1o9p_A Malonamidase E2; malona 100.0 2.4E-78 8.2E-83 639.9 30.5 331 136-506 2-335 (414)
9 3ppm_A Fatty-acid amide hydrol 100.0 2.8E-75 9.7E-80 636.6 23.2 356 132-505 67-457 (573)
10 3a1k_A Amidase; AS family enzy 100.0 2.5E-76 8.5E-81 640.6 13.5 361 136-505 13-415 (521)
11 3shg_B VBHA; ampylation, adeny 40.8 32 0.0011 25.8 4.0 28 138-165 32-59 (61)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=4.9e-85 Score=704.08 Aligned_cols=367 Identities=29% Similarity=0.436 Sum_probs=318.5
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHH-hcCCCCCCccccEEEE
Q 010596 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRY-KKGEPISVLDGVLIAV 211 (506)
Q Consensus 133 ~~~~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~-~~g~~~gpL~GVPiaV 211 (506)
+.++|+.+++++|++|++||+||+++||+||++.+ +.+|||+++++|+|+++|+++|+++ ++|++ ||||||||+|
T Consensus 3 l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~v 78 (485)
T 3ip4_A 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETD---PTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGI 78 (485)
T ss_dssp GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEE
T ss_pred cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEE
Confidence 56789999999999999999999999999999986 6899999999999999999999999 89999 9999999999
Q ss_pred ecCCCCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 010596 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (506)
Q Consensus 212 KD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~~GGSSgG 291 (506)
||+|+++|++||+||..+.++.+ .+||++|+|||+|||||+||||||||+++.+|.|++||+|+||||++|+|||||||
T Consensus 79 KD~~~v~G~~tt~Gs~~~~~~~~-~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgG 157 (485)
T 3ip4_A 79 KDNIITNGLETTCASKMLEGFVP-IYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGG 157 (485)
T ss_dssp ETTBCBTTBCCCTTSGGGTTCCC-SSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EcCcccCCCccCCCChhhcCCCC-CCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccH
Confidence 99999999999999998877654 68999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCccceeccCCCCHHHHHHHHHHHcCCCCCC
Q 010596 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ 371 (506)
Q Consensus 292 sAaaVAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~~~~Gp~arsv~Dla~~~~~i~g~d~~d 371 (506)
||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|
T Consensus 158 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d 237 (485)
T 3ip4_A 158 SAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND 237 (485)
T ss_dssp HHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTC
T ss_pred HHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCccccccccCCCCCcEEEEeCCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChHHHHHHHHHHHHH
Q 010596 372 QPTVSLPKVSFPLLKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGS 450 (506)
Q Consensus 372 ~~~~~~p~~~~~~~~~~~~~~~lrIG~~~~~~~-~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~~~~~~~~~~~~~ 450 (506)
+.+...|.+.+... ...+++++|||++.+++. .++|+|+++++++++.|++ +||+|+++++|.+++....+..++.+
T Consensus 238 ~~~~~~~~~~~~~~-~~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~~~~~~~~ 315 (485)
T 3ip4_A 238 STSAPVDDVDFTSE-IGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKS-LGAVVEEVSLPNTKFGIPSYYVIASS 315 (485)
T ss_dssp TTSCCCCCCCCSTT-TTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHHHHHHHH
T ss_pred ccccccCccchhhh-hccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 65433222211110 123578999999987764 5799999999999999996 89999999999887777778888888
Q ss_pred HHHHhhHHH------------------HHhcCCCCCCHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHH-HHHHhhhC
Q 010596 451 ECSTSLSSY------------------LQKINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRKPKV-FHDLLYKE 506 (506)
Q Consensus 451 e~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~g~-----~~s~~dy~~A~~~r~~~~-~~~~lf~k 506 (506)
|++.++..+ +.......++++++..+..|. .....+|.+|++.|++++ .+.++|++
T Consensus 316 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 395 (485)
T 3ip4_A 316 EASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN 395 (485)
T ss_dssp HHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988765321 111011246677776665543 223346899999999998 88888864
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=9.9e-85 Score=692.70 Aligned_cols=345 Identities=29% Similarity=0.400 Sum_probs=317.7
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHHhcCCCCCCccccEEEEecCC
Q 010596 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (506)
Q Consensus 136 ~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~~~g~~~gpL~GVPiaVKD~~ 215 (506)
+|+.+++++|++|++||+||++++|+||++.+ + +|+|+++++|+|+++|+++|+++++|+++||||||||+|||+|
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~---~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 76 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQ---D-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLF 76 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTG---G-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTS
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---C-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEecc
Confidence 47899999999999999999999999999975 7 9999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 010596 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (506)
Q Consensus 216 ~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~~GGSSgGsAaa 295 (506)
|++|++||+||..+ +.++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||+.|+|||||||||||
T Consensus 77 ~v~G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaa 154 (434)
T 2dc0_A 77 PVKGMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVA 154 (434)
T ss_dssp CBTTBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHH
T ss_pred ccCCcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHH
Confidence 99999999999987 4554789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCccceeccCCCCHHHHHHHHHHHcCCCCCCCCCC
Q 010596 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (506)
Q Consensus 296 VAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~~~~Gp~arsv~Dla~~~~~i~g~d~~d~~~~ 375 (506)
||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+ +.|+.
T Consensus 155 VAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~-- 231 (434)
T 2dc0_A 155 VALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLE-- 231 (434)
T ss_dssp HHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCC--
T ss_pred HHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 44421
Q ss_pred CCCCCccccccccCCCCCcEEEEeCCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChHHHHHHHHHHHHHHHHH
Q 010596 376 SLPKVSFPLLKSATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECST 454 (506)
Q Consensus 376 ~~p~~~~~~~~~~~~~~~lrIG~~~~~~-~~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~~~~~~~~~~~~~e~~~ 454 (506)
..+++|||++.+++ ...+|+++++++++++.|++ +||+|+++++| +++....+..++..|++.
T Consensus 232 --------------~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p-~~~~~~~~~~~~~~e~~~ 295 (434)
T 2dc0_A 232 --------------GVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPA-LRAEVREVSLP-LEGVYEVYTRLVRYEAAR 295 (434)
T ss_dssp --------------CCCSCEEEECHHHHTTCSCHHHHHHHHHHHHHTTT-TTCEEEECCCC-CTTHHHHHHHHHHHHHHH
T ss_pred --------------cccCCEEEEECccccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCC-cHHHHHHHHHHHHHHHHH
Confidence 24689999987643 45799999999999999986 89999999988 766666777778899998
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHhhhC
Q 010596 455 SLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRKPKV-FHDLLYKE 506 (506)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~s~~dy~~A~~~r~~~~-~~~~lf~k 506 (506)
.+..+++. ....+++.++.++..+..++..+|.++++.|.+++ .+.++|++
T Consensus 296 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 347 (434)
T 2dc0_A 296 IHEKALKE-HPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRG 347 (434)
T ss_dssp HSHHHHHH-CGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-chhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88777765 45678999999999999999999999999999999 88888864
No 3
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=1.4e-83 Score=695.58 Aligned_cols=370 Identities=27% Similarity=0.378 Sum_probs=319.1
Q ss_pred ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHHhcCCCCCCccccEEE
Q 010596 131 PFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIA 210 (506)
Q Consensus 131 ~~~~~~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~~~g~~~gpL~GVPia 210 (506)
+++.++|+.+++++|++|++|++||+++||+||++.++.++.+|+|+++++| |+++|+++|+++++|++.||||||||+
T Consensus 6 ~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~ 84 (503)
T 1m22_A 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLL 84 (503)
T ss_dssp CTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEE
T ss_pred CCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeE
Confidence 3456789999999999999999999999999999987544789999999998 999999999999999999999999999
Q ss_pred EecCCCCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhcc-----ccCCCCCCCCCCCCCCCCCCCC
Q 010596 211 VKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA-----GTSGINPHYGVARNPYDPSKIT 285 (506)
Q Consensus 211 VKD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~-----~~~g~n~~~G~t~NP~n~~~~~ 285 (506)
|||+|+++|++||+||..+.++. + +||++|+|||+|||||+||||||||++ +.+|+|++||+|+||||++|+|
T Consensus 85 vKD~~~v~G~~Tt~Gs~~~~~~~-~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~p 162 (503)
T 1m22_A 85 LKDNINAAPMATSAGSLALQGFR-P-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP 162 (503)
T ss_dssp EETTBCCTTSCCCTTCGGGTTCC-C-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred eecccccCCCCcCCCCHhhcCCC-C-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999887764 5 899999999999999999999999998 7789999999999999999999
Q ss_pred CCCCchhHHHHHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCccceeccCCCCHHHHHHHHHHHc
Q 010596 286 GGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAIN 365 (506)
Q Consensus 286 GGSSgGsAaaVAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~~~~Gp~arsv~Dla~~~~~i~ 365 (506)
||||||||||||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+
T Consensus 163 GGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~ 242 (503)
T 1m22_A 163 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA 242 (503)
T ss_dssp CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC---CccccccccCCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChHHHHH
Q 010596 366 GPLPSQQPTVSLPK---VSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRL 442 (506)
Q Consensus 366 g~d~~d~~~~~~p~---~~~~~~~~~~~~~~lrIG~~~~~~~~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~~~~~ 442 (506)
|+|+.|+.+...|. ..+........++++|||++.+++ ..+|+++++++++++.|++ +||+|+++++|.+++...
T Consensus 243 g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~-~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~ 320 (503)
T 1m22_A 243 GRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL-LKYRGMPPLIEQAATELRR-AGAVVVPVELPNQGAWAE 320 (503)
T ss_dssp CCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG-GGSTTHHHHHHHHHHHHHH-TTCEEEEECCTTTTTTHH
T ss_pred CCCCCCccccccccccccchhhhccccCCCCCEEEEECccc-cCCHHHHHHHHHHHHHHHH-cCCEEEEeCCCcHHHHHH
Confidence 99887753322221 011100011246889999998766 3789999999999999996 899999999987654445
Q ss_pred HHHHHHHHHHHHhhHHHHHhc--------------------CCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-H--
Q 010596 443 AHYLTIGSECSTSLSSYLQKI--------------------NCSDQGWDARVALSVYGSFSSQEYIKAQKIRKPKV-F-- 499 (506)
Q Consensus 443 ~~~~~~~~e~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~g~~~s~~dy~~A~~~r~~~~-~-- 499 (506)
.++.++.+|+..++..++... ....++++++..+..+..++..+|.++++.|++++ .
T Consensus 321 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 400 (503)
T 1m22_A 321 AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEG 400 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 566667788887766665431 01245666777777778899999999998888776 5
Q ss_pred HHHhhh
Q 010596 500 HDLLYK 505 (506)
Q Consensus 500 ~~~lf~ 505 (506)
+.++|+
T Consensus 401 ~~~~~~ 406 (503)
T 1m22_A 401 IDAALA 406 (503)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888775
No 4
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.3e-82 Score=683.64 Aligned_cols=362 Identities=28% Similarity=0.440 Sum_probs=313.4
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHHhcCCCCCCccccEEEEe
Q 010596 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVK 212 (506)
Q Consensus 133 ~~~~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~~~g~~~gpL~GVPiaVK 212 (506)
+.++|+.+++++|++|++||+||++++|+||++.+ +.+|||++++.|+|+++|+++|++ .||||||||+||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~------~gpL~GvPi~vK 72 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTE---EKVKAYITPLYGKALKQAESLKER------ELPLFGIPIAVK 72 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHTCCCT------TSTTTTCEEEEE
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CcCcEEEEeChHHHHHHHHhhchh------cCCcCCceEEEE
Confidence 45689999999999999999999999999999986 689999999999999999999875 689999999999
Q ss_pred cCCCCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 010596 213 DEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGS 292 (506)
Q Consensus 213 D~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~~GGSSgGs 292 (506)
|+|+++|++||+||..+.++.+ .+||++|+|||+||||++||||||||+++.+|.|++||+|+||||++|+||||||||
T Consensus 73 D~~~~~G~~tt~Gs~~~~~~~~-~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 151 (478)
T 3h0l_A 73 DNILVEGEKTTCASKILENFVA-PYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGS 151 (478)
T ss_dssp TTBCCTTSBCCTTCGGGTTCBC-SSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHH
T ss_pred cCccCCCCCcCCcCHhhcCCCC-CCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHH
Confidence 9999999999999998877654 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCccceeccCCCCHHHHHHHHHHHcCCCCCCC
Q 010596 293 AAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372 (506)
Q Consensus 293 AaaVAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~~~~Gp~arsv~Dla~~~~~i~g~d~~d~ 372 (506)
|+|||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|+
T Consensus 152 aaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~ 231 (478)
T 3h0l_A 152 AASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDS 231 (478)
T ss_dssp HHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCT
T ss_pred HHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCccccccccCCCCCcEEEEeCCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChHHHHHHHHHHHHHH
Q 010596 373 PTVSLPKVSFPLLKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSE 451 (506)
Q Consensus 373 ~~~~~p~~~~~~~~~~~~~~~lrIG~~~~~~~-~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~~~~~~~~~~~~~e 451 (506)
.+...|.+.+... ...+++++|||++.+++. .++|+|+++++++++.|++ +||+|+++++|.+++....++.++.+|
T Consensus 232 ~~~~~p~~~~~~~-~~~~~~~lrIgv~~~~~~~~~~p~v~~a~~~a~~~L~~-~G~~v~~v~~p~~~~~~~~~~~~~~~e 309 (478)
T 3h0l_A 232 TSAKVPVPEWSEE-VKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEK-EGFEIKEVSLPHVKYSIPTYYIIAPSE 309 (478)
T ss_dssp TSCCCCCCCHHHH-TTCCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHHHHHHHHH
T ss_pred cccccCccchhhh-hccCCCCCEEEEECCcccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCcHHHHHHHHHHHHHHH
Confidence 5433222211110 123578999999987653 5799999999999999986 899999999998877777888888899
Q ss_pred HHHhhHHH------------------HHhcCCCCCCHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHH-HHHHhhhC
Q 010596 452 CSTSLSSY------------------LQKINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRKPKV-FHDLLYKE 506 (506)
Q Consensus 452 ~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~g~-----~~s~~dy~~A~~~r~~~~-~~~~lf~k 506 (506)
++.++..+ +.......++++++..+..|. .....+|.+|++.|++++ .+.++|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 388 (478)
T 3h0l_A 310 ASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEE 388 (478)
T ss_dssp HHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88765322 111011236677776666553 223356999999999998 88888864
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-82 Score=679.57 Aligned_cols=355 Identities=31% Similarity=0.502 Sum_probs=309.8
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHHhcCCCCCCccccEEEEecCC
Q 010596 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (506)
Q Consensus 136 ~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~~~g~~~gpL~GVPiaVKD~~ 215 (506)
+++.+++++|++|++||+||+++||+||++.+ +.+|+|++++ |+|+++|+++|+++ |||||||+|||+|
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~-~~al~~A~~~d~~~-------pL~GvPi~vKD~~ 69 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELD---PGLGAFLSLN-ERLLEEAEAVDPGL-------PLAGLVVAVKDNI 69 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEEC-CTTTHHHHTSCCSC-------TTTTCEEEEETTB
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCccEEEEeC-HHHHHHHHhcCccC-------CcCCCeEEEECCc
Confidence 47899999999999999999999999999986 6899999999 99999999988653 8999999999999
Q ss_pred CCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 010596 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (506)
Q Consensus 216 ~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~~GGSSgGsAaa 295 (506)
+++|++||+||..+.++.+ .+||++|++||+||||++||||||||+++.+|.|++||+|+||||++|+|||||||||+|
T Consensus 70 ~~~G~~tt~Gs~~~~~~~~-~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaa 148 (471)
T 3kfu_E 70 ATRGLRTTAGSRLLENFVP-PYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAA 148 (471)
T ss_dssp CCTTSCCCTTCSTTTTCCC-SSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHH
T ss_pred ccCCccccccCHhHcCCCC-CCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHH
Confidence 9999999999998877654 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCccceeccCCCCHHHHHHHHHHHcCCCCCCCCCC
Q 010596 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (506)
Q Consensus 296 VAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~~~~Gp~arsv~Dla~~~~~i~g~d~~d~~~~ 375 (506)
||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+|+.|+.+.
T Consensus 149 VAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~ 228 (471)
T 3kfu_E 149 LAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228 (471)
T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCC
T ss_pred HHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876443
Q ss_pred CCCCCccccccccCCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChHHHHHHHHHHHHHHHHHh
Q 010596 376 SLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTS 455 (506)
Q Consensus 376 ~~p~~~~~~~~~~~~~~~lrIG~~~~~~~~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~~~~~~~~~~~~~e~~~~ 455 (506)
..| ..+... ...+.+++|||++.+++...+|+|+++++++++.|++ +||+|+++++|.+++....+..++.+|++.+
T Consensus 229 ~~~-~~~~~~-~~~~~~~lrIgv~~~~~~~~~p~v~~a~~~a~~~L~~-~G~~v~~v~~p~~~~~~~~~~~~~~~e~~~~ 305 (471)
T 3kfu_E 229 DLP-PRFQEA-LEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRE-LGLSVREVSWPSLPQALAAYYILAPAEASSN 305 (471)
T ss_dssp CCC-CCTTCC-SCCCCSSCEEEEEGGGTTTCCHHHHHHHHHHHHHHHT-TTCEEEEECCTTGGGHHHHHHHHHHHHHHHH
T ss_pred CCC-cchhhh-hccCCCCCEEEEECCccCCCCHHHHHHHHHHHHHHHH-cCCeeeeecCccHHHHHHHHHHHHHHHHHHH
Confidence 322 111100 0124689999999887766799999999999999985 8999999999988877778888888998766
Q ss_pred hHHH-----------------HHhcCCCCCCHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHH-HHHHhhhC
Q 010596 456 LSSY-----------------LQKINCSDQGWDARVALSVYGS-----FSSQEYIKAQKIRKPKV-FHDLLYKE 506 (506)
Q Consensus 456 ~~~~-----------------~~~~~~~~~~~~~~~~l~~g~~-----~s~~dy~~A~~~r~~~~-~~~~lf~k 506 (506)
+..+ +.. .+..+++.++..+..|.. .+..+|.+|++.|.+++ .+.++|++
T Consensus 306 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 378 (471)
T 3kfu_E 306 LARYDGTLYGRRAAGEEVEGMMEA-TRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFRE 378 (471)
T ss_dssp GGGCSTTTTSCCCCCSSSHHHHHH-HHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhhhhccccccchhhHHHHHHh-hhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432 222 122378888877766532 33458999999999998 88888864
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=4e-81 Score=675.04 Aligned_cols=358 Identities=22% Similarity=0.270 Sum_probs=310.8
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHHhcCCCCCCccccEEEE
Q 010596 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (506)
Q Consensus 132 ~~~~~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~~~g~~~gpL~GVPiaV 211 (506)
++.+ |+.+++++|++|++|++||++++|+||++.+ +.+|+|++++.|+|+++|++ | .||||||||+|
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~-d--------~gpL~GvPi~v 71 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVN---PEINAVIIPLFEKARRESEL-A--------SGPFAGVPYLL 71 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHH-C--------CSTTTTCEEEE
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CccCeEEecCHHHHHHHhhh-c--------CCCcCCcEEEE
Confidence 3455 9999999999999999999999999999875 68999999999999999988 6 48999999999
Q ss_pred ecCC-CCCCCcCCCcccccc--cCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCCCCCC
Q 010596 212 KDEI-DCSPYPTTGGTKWLH--KVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGS 288 (506)
Q Consensus 212 KD~~-~v~G~~tt~Gs~~~~--~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~~GGS 288 (506)
||+| +++|++||+||..+. ++. +.+||++|+|||+|||||+||||||||+++.+|.|++||+|+||||+.|+||||
T Consensus 72 KD~~~~v~G~~Tt~Gs~~~~~~~~~-~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGS 150 (493)
T 3a2q_A 72 KDLTVVSQGDINTSSIKGMKESGYR-ADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGS 150 (493)
T ss_dssp ESSSSCCTTSBCCTTCHHHHHHTCB-CSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSS
T ss_pred ecCCcCcCCCcccccChhhhhcCCC-CCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcC
Confidence 9999 999999999999887 665 478999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCC--C-CCCCccceeccCCCCHHHHHHHHHHHc
Q 010596 289 SSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGV--L-PLNWTVGMVGILAATVEDALVVYAAIN 365 (506)
Q Consensus 289 SgGsAaaVAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~--~-~~~~s~~~~Gp~arsv~Dla~~~~~i~ 365 (506)
|||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|+ . ++++++|++|||||||+|+++++++|.
T Consensus 151 SgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~ 230 (493)
T 3a2q_A 151 SGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVS 230 (493)
T ss_dssp SHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHB
T ss_pred cHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999988 4 777789999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccccc-cCCCCCcEEEEeCCCC---CCCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChH--H
Q 010596 366 GPLPSQQPTVSLPKVSFPLLKS-ATSISAIKLAKYDAWF---NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIE--V 439 (506)
Q Consensus 366 g~d~~d~~~~~~p~~~~~~~~~-~~~~~~lrIG~~~~~~---~~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~--~ 439 (506)
|+|+.|+.+...|. .++... ....+++|||++.+++ ..++|+++++++++++.|++ +||+|+++++|.++ +
T Consensus 231 g~d~~d~~~~~~p~--~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~~~~~~~~ 307 (493)
T 3a2q_A 231 GHRPGDTFCAPTAS--RPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAA-LGHDVNDAYPEALGDRS 307 (493)
T ss_dssp SCCTTCSCCCCCCS--SCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHH-TTCEEEECCCGGGGCCT
T ss_pred CCCCCCcccccCCC--cchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCccCHHH
Confidence 99987754322221 122111 1246889999987764 35799999999999999996 89999999987444 4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh----cCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHhh-hC
Q 010596 440 MRLAHYLTIGSECSTSLSSYLQK----INCSDQGWDARVALSVYGSFSSQEYIKAQKIRKPKV-FHDLLY-KE 506 (506)
Q Consensus 440 ~~~~~~~~~~~e~~~~~~~~~~~----~~~~~~~~~~~~~l~~g~~~s~~dy~~A~~~r~~~~-~~~~lf-~k 506 (506)
....+..++..|++..+..+.+. .....+++.++.++..+..++..+|.++++.|.+++ .+.++| ++
T Consensus 308 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 380 (493)
T 3a2q_A 308 FLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAG 380 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55566677788888754433221 133568899999999999999999999999999999 888888 53
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=4.7e-80 Score=664.02 Aligned_cols=350 Identities=27% Similarity=0.400 Sum_probs=297.3
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHHhcCCCCCCccccEEEE
Q 010596 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (506)
Q Consensus 132 ~~~~~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~~~g~~~gpL~GVPiaV 211 (506)
++.++|+.++ |++|++|++||++++|+||++.+ +.+|+|+++++|+|+ |+ + ||||||||+|
T Consensus 6 ~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~al------d~-----~--gpL~GvPi~v 66 (476)
T 2gi3_A 6 DFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLD---PHVKAFISVRENVSV------EK-----K--GKFWGIPVAI 66 (476)
T ss_dssp CGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHH---HHHCCEEEECCCCCC------CC-----C--STTTTCEEEE
T ss_pred ccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhC---CceeEEEecChhhhh------hc-----c--CCcCCceEEE
Confidence 4556789888 99999999999999999999985 689999999988776 22 2 8999999999
Q ss_pred ecCCCCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 010596 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (506)
Q Consensus 212 KD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~~GGSSgG 291 (506)
||+|+++|++||+||..+.++.+ .+||++|+|||+|||||+||||||||+++.+|.|++||+|+||||+.|+|||||||
T Consensus 67 KD~~~v~G~~Tt~Gs~~~~~~~~-~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 145 (476)
T 2gi3_A 67 KDNILTLGMRTTCASRILENYES-VFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGG 145 (476)
T ss_dssp ETTBCCSSSCCCTTCGGGTTCCC-CSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EcCccCCCCccCccChhhcCCCC-CCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHH
Confidence 99999999999999998877654 68999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCccceeccCCCCHHHHHHHHHHHcCCCCCC
Q 010596 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ 371 (506)
Q Consensus 292 sAaaVAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~~~~Gp~arsv~Dla~~~~~i~g~d~~d 371 (506)
||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|
T Consensus 146 sAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d 225 (476)
T 2gi3_A 146 SAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDEND 225 (476)
T ss_dssp HHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTB
T ss_pred HHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCCCCCccccccc-cCCCCCcEEEEeCCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChHHHHHHHHHHHH
Q 010596 372 QPTVSLPKVSFPLLKS-ATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIG 449 (506)
Q Consensus 372 ~~~~~~p~~~~~~~~~-~~~~~~lrIG~~~~~~-~~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~~~~~~~~~~~~ 449 (506)
+.+...|. ++... ....+++|||++.+++ ...+|+++++++++++.|++ +||+|+++++|.++.....+..++.
T Consensus 226 ~~~~~~p~---~~~~~~~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~~~~~~~ 301 (476)
T 2gi3_A 226 ATTVNRKV---DFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLER-LGAKVERVKIPHIKYSVATYYVIAP 301 (476)
T ss_dssp TTCCSCCC---CSSTTTTSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHHHHHHH
T ss_pred ccccCCCc---chhhhhhcCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCchHHHHHHHHHHHH
Confidence 54322221 11111 1246889999998776 46799999999999999996 8999999999987666666777778
Q ss_pred HHHHHhhHHHH-----------------HhcCCCCCCHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHH-HHHHhhh
Q 010596 450 SECSTSLSSYL-----------------QKINCSDQGWDARVALSVYGSFSS-----QEYIKAQKIRKPKV-FHDLLYK 505 (506)
Q Consensus 450 ~e~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~g~~~s~-----~dy~~A~~~r~~~~-~~~~lf~ 505 (506)
+|++.++..+. .......+++.++..+..|..++. .+|.+|++.|.+++ .+.++|+
T Consensus 302 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~ 380 (476)
T 2gi3_A 302 AEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLS 380 (476)
T ss_dssp HHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877663321 111223466777777766654443 38899999999998 8888885
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=2.4e-78 Score=639.93 Aligned_cols=331 Identities=25% Similarity=0.381 Sum_probs=296.4
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHHhcCCCCCCccccEEEEecCC
Q 010596 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (506)
Q Consensus 136 ~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~~~g~~~gpL~GVPiaVKD~~ 215 (506)
+|+.+++++|++|++|++||++++|+||++.+ +.+|+|+++++|++ + ++.||||||||+|||+|
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~a-~------------~~~gpL~GvPi~vKD~~ 65 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEARE---KEVHAFVRHDKSAR-A------------QASGPLRGIAVGIKDII 65 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECTTCC-C------------CSSSTTTTCEEEEETTB
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---ccccEEEEeCHHHh-c------------ccCCCcCCCEEEEEccc
Confidence 58999999999999999999999999999875 68999999998865 1 35689999999999999
Q ss_pred CCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 010596 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (506)
Q Consensus 216 ~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~~GGSSgGsAaa 295 (506)
+++|++||+||..+.++.+ .+||++|+|||+||||++||||||||++ .|+ |+|+||||++|+|||||||||||
T Consensus 66 ~v~G~~tt~Gs~~~~~~~~-~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaa 138 (414)
T 1o9p_A 66 DTANMPTEMGSEIYRGWQP-RSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAA 138 (414)
T ss_dssp CCSSSCCCTTSGGGTTCCC-SSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHH
T ss_pred ccCCcccCcCCHhhccCCC-CCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHH
Confidence 9999999999998877654 6899999999999999999999999998 456 99999999999999999999999
Q ss_pred HHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCccceeccCCCCHHHHHHHHHHHcCCCCCCCCCC
Q 010596 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (506)
Q Consensus 296 VAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~~~~Gp~arsv~Dla~~~~~i~g~d~~d~~~~ 375 (506)
||+|++|+|+|||||||||+||+||||||||||+||||+.|+.|+++++|++|||||||+|+++++++|.|++ +.
T Consensus 139 VAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~--~~--- 213 (414)
T 1o9p_A 139 VGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS--EF--- 213 (414)
T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG--GG---
T ss_pred HHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC--cc---
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 10
Q ss_pred CCCCCccccccccCCCCCcEEEEeCCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEecCCC-hHHHHHHHHHHHHHHHH
Q 010596 376 SLPKVSFPLLKSATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPN-IEVMRLAHYLTIGSECS 453 (506)
Q Consensus 376 ~~p~~~~~~~~~~~~~~~lrIG~~~~~~-~~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~-~~~~~~~~~~~~~~e~~ 453 (506)
.+ ....+++|||++.+++ ...+|+++++++++++.|++ +||+|+++++|. ++.....+..++.+|++
T Consensus 214 -~~---------~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~e~~ 282 (414)
T 1o9p_A 214 -SG---------IVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAER-AGASVQAIDLPEAVHEAWRIHPIIQDFEAH 282 (414)
T ss_dssp -SS---------CCCCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cc---------ccCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHH-CCCEEEEecCcchHHHHHHHHHHHHHHHHH
Confidence 00 1135789999987654 45799999999999999996 899999999875 35555566677889999
Q ss_pred HhhHHHHHhcCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHhhhC
Q 010596 454 TSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRKPKV-FHDLLYKE 506 (506)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~s~~dy~~A~~~r~~~~-~~~~lf~k 506 (506)
..+..+++. ....+++.++.++..+..++..+|.++++.|.+++ .+.++|++
T Consensus 283 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 335 (414)
T 1o9p_A 283 RALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEG 335 (414)
T ss_dssp HHTHHHHHH-SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHh-ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888887766 55678999999999999999999999999999999 88888864
No 9
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.8e-75 Score=636.62 Aligned_cols=356 Identities=21% Similarity=0.239 Sum_probs=288.4
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceeEEEecCHHHHHHHHHHHhHHHhcCCCCCCccccEEEE
Q 010596 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (506)
Q Consensus 132 ~~~~~si~~l~~~~~sg~~Tp~ev~~a~l~~i~~~~~~~~~~~a~~~~~~e~al~~A~~~d~r~~~g~~~gpL~GVPiaV 211 (506)
++.++|+.+++++|++|++|++||+++||+||++.+ +.+|||+++..| ++++|++.++ .||||||||+|
T Consensus 67 ~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~---~~~na~~~~~~~-a~~~a~~~~~-------~gpL~GvPi~v 135 (573)
T 3ppm_A 67 ALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVN---KGTNCVTSYLTD-CETQLSQAPR-------QGLLYGVPVSL 135 (573)
T ss_dssp HHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECTT-HHHHHHHCCT-------TCTTTTCEEEE
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CccCEEEEECHH-HHHHHHhhhh-------cCCcCCCeEEE
Confidence 456789999999999999999999999999999876 579999999866 5666665542 28999999999
Q ss_pred ecCCCCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 010596 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (506)
Q Consensus 212 KD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~~GGSSgG 291 (506)
||+|+++|++||+||..+.++. +.+||++|++||+||||++||||||||+++.++.|++||+|+||||++++|||||||
T Consensus 136 KD~~~~~G~~tt~Gs~~~~~~~-~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 214 (573)
T 3ppm_A 136 KECFSYKGHDSTLGLSLNEGMP-SESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGG 214 (573)
T ss_dssp ETTBCCBTCCCCTTCGGGTTCC-BSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHH
T ss_pred EcccCCCCCCcCCcChhhcCCC-CCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCch
Confidence 9999999999999999887664 578999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCc----cceeccCCCCHHHHHHHHHHHcCC
Q 010596 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWT----VGMVGILAATVEDALVVYAAINGP 367 (506)
Q Consensus 292 sAaaVAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s----~~~~Gp~arsv~Dla~~~~~i~g~ 367 (506)
||||||+|++|+|+|||||||||+||+||||||||||+||||+.|+.+.+++ +|++|||||||+|+++++++|.|+
T Consensus 215 saaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~ 294 (573)
T 3ppm_A 215 EGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCE 294 (573)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSH
T ss_pred HHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999998765 899999999999999999999987
Q ss_pred CC--CCCCCCCCCCCccccccc-cCCCCCcEEEEeCCC-CCCCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChHHHHHH
Q 010596 368 LP--SQQPTVSLPKVSFPLLKS-ATSISAIKLAKYDAW-FNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLA 443 (506)
Q Consensus 368 d~--~d~~~~~~p~~~~~~~~~-~~~~~~lrIG~~~~~-~~~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~~~~~~ 443 (506)
|+ .|+.. +..++... ....+++|||++.+. +...+|+++++++++++.|++ +||+|+++++|.+.+....
T Consensus 295 d~~~~d~~~-----~~~~~~~~~~~~~~~lrigv~~~~~~~~~~p~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~ 368 (573)
T 3ppm_A 295 HLFTLDPTV-----PPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEA-AGHTLIPFLPNNIPYALEV 368 (573)
T ss_dssp HHHHHCTTS-----CCCCCCHHHHTCCCCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEECCCTTHHHHHHT
T ss_pred cccccCCCC-----CccccchhhcccCCCCEEEEEcccCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEecCccHHHHHHH
Confidence 63 22211 11223211 234689999998654 345799999999999999986 8999999999987765432
Q ss_pred HH-HHHHHHHHHhhHHHHHhc-------------------------CCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 010596 444 HY-LTIGSECSTSLSSYLQKI-------------------------NCSDQGWDARVALSVYGSFSSQEYIKAQKIRKPK 497 (506)
Q Consensus 444 ~~-~~~~~e~~~~~~~~~~~~-------------------------~~~~~~~~~~~~l~~g~~~s~~dy~~A~~~r~~~ 497 (506)
++ ..+.+|....+...+... ....+.+.+...+..+...+..+|.+++..|..+
T Consensus 369 ~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~ 448 (573)
T 3ppm_A 369 LSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMY 448 (573)
T ss_dssp HHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 22 222223222211111000 0012233334445566778899999999998888
Q ss_pred H-HHHHhhh
Q 010596 498 V-FHDLLYK 505 (506)
Q Consensus 498 ~-~~~~lf~ 505 (506)
+ .+.+.|+
T Consensus 449 r~~~~~~w~ 457 (573)
T 3ppm_A 449 RQSVIAQWK 457 (573)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 8 7776664
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=2.5e-76 Score=640.65 Aligned_cols=361 Identities=24% Similarity=0.321 Sum_probs=289.1
Q ss_pred cCHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhCCCCCceeEEE-ecCHHHHHHHHHHHhHH---------HhcCCCCCCc
Q 010596 136 WTVLDYSKAYSSGDITP-RMVAERFIAAVRESSNPPMKMSFFI-NYNEEDILKQATESTLR---------YKKGEPISVL 204 (506)
Q Consensus 136 ~si~~l~~~~~sg~~Tp-~ev~~a~l~~i~~~~~~~~~~~a~~-~~~~e~al~~A~~~d~r---------~~~g~~~gpL 204 (506)
.++.++...+.+++++. ++++++++++|++.+. ..|+++ .+..+++ .++.+.|+. ..+|++.|||
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL 88 (521)
T 3a1k_A 13 AAARHYGITLDKTARLEWPALIDGALGSYDVVDQ---LYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVL 88 (521)
T ss_dssp HHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHH---HHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHh---hhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCC
Confidence 35666677777788888 8888888888876542 223343 3333334 344444431 1248888999
Q ss_pred cccEEEEecCCCCCCCcCCCcccccccCCCCCCCHHHHHHHHHCCCeEEeecchhhhccccCCCCCCCCCCCCCCCCCCC
Q 010596 205 DGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKI 284 (506)
Q Consensus 205 ~GVPiaVKD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~rLr~AGAIi~GKTnm~E~~~~~~g~n~~~G~t~NP~n~~~~ 284 (506)
|||||+|||||+++|++||+||..+.++.+ .+||++|+|||+|||||+||||||||+++.+|.|++||+|+||||++|+
T Consensus 89 ~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~~~-~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~ 167 (521)
T 3a1k_A 89 TGRRVAIKDNVTVAGVPMMNGSRTVEGFTP-SRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQRE 167 (521)
T ss_dssp TTCEEEEETTBCCTTSCBCTTCTTTTTBCC-SSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEE
T ss_pred CCCEEEEEcCcccCCcccCCCChhhcCCCC-CCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCC
Confidence 999999999999999999999998877754 6899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHhCCCcccccccCCCcccccccccCcccccCCCCcccCCCCCCCCCccceeccCCCCHHHHHHHHHHH
Q 010596 285 TGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 364 (506)
Q Consensus 285 ~GGSSgGsAaaVAag~~p~alGtD~GGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~~~~Gp~arsv~Dla~~~~~i 364 (506)
|||||||||||||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||||||+|+++++++|
T Consensus 168 pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl 247 (521)
T 3a1k_A 168 AGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVI 247 (521)
T ss_dssp CCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCC-CCCCccccccc-cCCCCCcEEEEeCCCCC--CCCHHHHHHHHHHHHHHHHhCCcEEEEecCCChHHH
Q 010596 365 NGPLPSQQPTVS-LPKVSFPLLKS-ATSISAIKLAKYDAWFN--DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVM 440 (506)
Q Consensus 365 ~g~d~~d~~~~~-~p~~~~~~~~~-~~~~~~lrIG~~~~~~~--~~~p~v~~~~~~a~~~L~~~~G~~vv~v~~p~~~~~ 440 (506)
+|+|+.|+.+.. .|.. ++... ..+++++|||++.+++. .++|+|+++++++++.|++ +|++|+++++|.+.+.
T Consensus 248 ag~d~~D~~~~~~~~~~--~~~~~l~~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~-~Ga~v~ev~~p~~~~~ 324 (521)
T 3a1k_A 248 AGRDGNDPRQADSVEAG--DYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTE-IGCTVEEVNIPWHLHA 324 (521)
T ss_dssp CSCCSSCTTSCTTCCCC--CSSTTTTSCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGG-GTCEEEEECCTHHHHH
T ss_pred hCCCCCCccccccCCCc--chhhhhccCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCchHhH
Confidence 999887754421 1211 11111 23468999999877553 4699999999999999986 8999999999876655
Q ss_pred HHHHHHHHHHHHHHh----------------------hHHHHHhcCCCCCCHHHHHHHHHh----cCCCHHHHHHHHHHH
Q 010596 441 RLAHYLTIGSECSTS----------------------LSSYLQKINCSDQGWDARVALSVY----GSFSSQEYIKAQKIR 494 (506)
Q Consensus 441 ~~~~~~~~~~e~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~g----~~~s~~dy~~A~~~r 494 (506)
...+..+...|...+ +..+.+. ....+++.++.++..| ..++..+|.+|++.|
T Consensus 325 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r 403 (521)
T 3a1k_A 325 FHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQ-HADALSETVKLVALTGHHGITTLGGASYGKARNLV 403 (521)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHH-SGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhh-hhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHH
Confidence 444444433332222 2222222 3456888888777655 357788999999999
Q ss_pred HHHH-HHHHhhh
Q 010596 495 KPKV-FHDLLYK 505 (506)
Q Consensus 495 ~~~~-~~~~lf~ 505 (506)
++++ .+.++|+
T Consensus 404 ~~~~~~~~~~~~ 415 (521)
T 3a1k_A 404 PLARAAYDTALR 415 (521)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 9998 8888886
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=40.80 E-value=32 Score=25.78 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 010596 138 VLDYSKAYSSGDITPRMVAERFIAAVRE 165 (506)
Q Consensus 138 i~~l~~~~~sg~~Tp~ev~~a~l~~i~~ 165 (506)
+.+..+.+-.|++|+.++++.+.+||.+
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 3467888999999999999999999986
Done!