RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010596
(506 letters)
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 264 bits (677), Expect = 6e-83
Identities = 120/316 (37%), Positives = 169/316 (53%), Gaps = 12/316 (3%)
Query: 135 RWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILK--QATEST 192
T + + + +++ + E ++A + E+ NP + F+ + E L +A +
Sbjct: 6 ELTAAELAALLRAKELSAVELVEAYLARI-EALNPDLN--AFVAVDPEAALALAEAAAAD 62
Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAIL 252
R GEP+ L GV IAVKD ID + PTT G+K L P DA V RLR GA++
Sbjct: 63 ARLAAGEPLGPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVP-PYDATVVERLRAAGAVI 121
Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
+GKTNM E G+S N +G RNP++ ++ GGSS GSAA VAAGL P+ALG D GGS
Sbjct: 122 LGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGS 181
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372
+R+PAA CG+VG KPT+GR+ GV+PL ++ +G LA TV DA ++ I GP P
Sbjct: 182 IRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDS 241
Query: 373 PTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDC--SDDIRVCCSRAVDKLCERYGWKVV 430
P P V L + +++ D+R AV L E G +VV
Sbjct: 242 PLPPPPPVPPALAG--KDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKAL-EAAGAEVV 298
Query: 431 EVTIPN-IEVMRLAHY 445
EV++P + LA Y
Sbjct: 299 EVSLPLLSDDYALAAY 314
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 234 bits (599), Expect = 8e-72
Identities = 127/353 (35%), Positives = 188/353 (53%), Gaps = 24/353 (6%)
Query: 155 VAERFIAAVRESSNPPMKMSFFINYNE-EDILKQATESTLRYKKGEPISVLDGVLIAVKD 213
+ E ++ E++NP + + + E K A + R +KG L GV I++KD
Sbjct: 2 LVEAYLDRA-EAANPKLNAFVTVFFEEALAQAKAADKRRARKEKG----PLHGVPISLKD 56
Query: 214 EIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYG 273
ID PTT G+K + P DA V RLR GA+++GKTNM E G++ N +G
Sbjct: 57 NIDVKGVPTTAGSK-ALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFG 115
Query: 274 VARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIP 333
RNP+D S+ GGSS GSAA VAAGL P+A+G D GGS+R+PAA CG+VG KPT+GR+
Sbjct: 116 PTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVS 175
Query: 334 LSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSIS 392
GV+P + ++ VG LA TVEDA ++ I G P+ + P F LK +
Sbjct: 176 RYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGL 235
Query: 393 AIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSEC 452
I + + D +F+ +++ +A L E G +VVEV P+++ +Y+ +E
Sbjct: 236 RIGVPREDFYFS-LDPEVQRAVRKAAAAL-EALGHEVVEVEPPSLKHALPLYYIIAPAEA 293
Query: 453 STSLSSYLQKI------NCSDQGWDARV-----ALSVYGSFSSQEYIKAQKIR 494
S++LS + D+ R+ ALS +S Y+KAQK+R
Sbjct: 294 SSNLSDLDELYPRIRDELLGDE-VKRRIELGAYALSAG--YSGAYYLKAQKVR 343
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 221 bits (565), Expect = 2e-66
Identities = 110/314 (35%), Positives = 170/314 (54%), Gaps = 8/314 (2%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
+ +I+ + + ++ E +P K++ FI EE+ L QA + + GE L G
Sbjct: 3 NKEISAVELTQAYLDR-IEEVDP--KLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAG 58
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
+ IA+KD I TT +K L P DA V +L+ GA+++GKTNM E G+S
Sbjct: 59 IPIAIKDNICTKGIRTTCASKILENYVP-PYDATVVEKLKAAGAVILGKTNMDEFAMGSS 117
Query: 267 GINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFK 326
N +G +NP+D ++ GGSS GSAA VAAGL P ALG D GGS+R PAA CGVVG K
Sbjct: 118 TENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLK 177
Query: 327 PTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLK 386
PT+GR+ G++ ++ +G A TVEDA ++ AI G P + +P +
Sbjct: 178 PTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDY-TAA 236
Query: 387 SATSISAIKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHY 445
I +K+ +F + +++ A+ KL E G ++VEV++P+ + A+Y
Sbjct: 237 LGKDIKGLKIGVPKEYFGEGLDPEVKEAVEAAIKKL-EDLGAEIVEVSLPHTKYALPAYY 295
Query: 446 LTIGSECSTSLSSY 459
+ +E S++L+ Y
Sbjct: 296 IIAPAEASSNLARY 309
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 203 bits (519), Expect = 9e-60
Identities = 112/313 (35%), Positives = 157/313 (50%), Gaps = 23/313 (7%)
Query: 127 SEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILK 186
S + P ++ + + A SG ++ + E +A R ++ P+ F + E L
Sbjct: 2 SHRDPDVASLSLTEAAAALRSGRLSCLELVEALLA--RAAALAPLNA--FTTVDAEGALA 57
Query: 187 QATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLR 246
A + G + +L GV I +KD I+ + PTT GT L P T DA V RL
Sbjct: 58 AARRIDAQRAAGAAL-LLAGVPIVIKDNINTAGMPTTAGTPALLGFVPAT-DAPVVQRLL 115
Query: 247 LCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALG 306
GA+ +GK NMHEL G + N +G RNPYDP++I GGSS G+AA VAA L P LG
Sbjct: 116 DAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLG 175
Query: 307 VDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 366
D GGSVR+PAALCGVVG +PT GR GV+P++ T VG +A +V D ++ A I G
Sbjct: 176 TDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITG 235
Query: 367 PLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSD-DIRVCCSRAVDKLCERY 425
P +++ ++L A F D D D+ A+ KL
Sbjct: 236 DAALPAP---------------VALAGLRLGVPAAPFWDGLDPDVAAVAEAALAKL-AAA 279
Query: 426 GWKVVEVTIPNIE 438
G VE+ +P +
Sbjct: 280 GVTFVELDLPGLH 292
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 202 bits (515), Expect = 3e-59
Identities = 105/346 (30%), Positives = 171/346 (49%), Gaps = 31/346 (8%)
Query: 172 KMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK 231
K++ F+ E LKQA + L G+ IAVKD I TT +K L
Sbjct: 29 KINAFLEVTVEKALKQAKKLDKAILT-----PLAGIPIAVKDNISTKGIVTTCASKILEN 83
Query: 232 VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291
P DA + RL+ GA+++GKTNM E G+S +G +NP++ ++ GGSS G
Sbjct: 84 YIP-PYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGG 142
Query: 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILA 351
SAA VAA L P +LG D GGS+R PA+ CGVVGFKPT+GR+ G++ ++ +G A
Sbjct: 143 SAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFA 202
Query: 352 ATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIR 411
TVED ++ I+G + +P + + +K+ + + +++
Sbjct: 203 RTVEDIALLLDVISGHDKRDSTSAKVP-DPEFFEELKKDLKGLKVGVVKEFSEEMDKEVQ 261
Query: 412 VCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY--------LQKI 463
A++ L E G ++VEV+ P+++ +Y+ SE S++L+ Y +++
Sbjct: 262 EKFENALEVL-EELGAEIVEVSFPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEP 320
Query: 464 NC--------SDQGWDARVALS-VYGSFSSQE------YIKAQKIR 494
N +G+ V + G+++ Y+KAQK+R
Sbjct: 321 NSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVR 366
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 194 bits (495), Expect = 3e-56
Identities = 110/314 (35%), Positives = 155/314 (49%), Gaps = 12/314 (3%)
Query: 143 KAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPIS 202
A +G+++ R VA+ +A + +NP +++ F E L +A GEP+
Sbjct: 14 AAVRAGELSARAVAQATLARI-ARANP--QLNAFTAVTAERALAEAARIDAARAAGEPLG 70
Query: 203 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
L GV AVK+ D + T G+K P T DA V RL GA+LVG NM E
Sbjct: 71 PLAGVPFAVKNLFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYA 130
Query: 263 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 322
G + N HYG RNP+D ++I GGSS GSAA VAAGL P LG D GS+R+PA+LCG+
Sbjct: 131 YGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGI 190
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVS- 381
G KPT+GR+ +G P ++ +G A +V D +VY + GP P P
Sbjct: 191 FGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPAEPT 250
Query: 382 FPLLKSATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVM 440
PLL +++A +F + R AVD++ + G EV +P
Sbjct: 251 APLL--DRGAEGLRIAVLGGYFAQWADPEARA----AVDRVAKALG-ATREVELPEAARA 303
Query: 441 RLAHYLTIGSECST 454
R A ++ SE
Sbjct: 304 RAAAFIITASEGGN 317
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 191 bits (488), Expect = 2e-55
Identities = 94/243 (38%), Positives = 133/243 (54%), Gaps = 6/243 (2%)
Query: 142 SKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPI 201
+ SG + P VAE+ + A+ ++ + FI+ EE +++A S+ R++ G +
Sbjct: 12 AVLIQSGALDPVQVAEQALDAIASYADQ----AVFISLTEERAMREAEASSARWRAGRSL 67
Query: 202 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHEL 261
+LDG+ IA KD D + TT G+ L P + DA V L G + +G+TNM E
Sbjct: 68 GLLDGIPIAWKDLFDVAGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEF 127
Query: 262 GAGTSGINPHYGVARNPY--DPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAAL 319
G+NPHYG NP D +I GGSSSGSA VAAGL PVA+G D GGSVR+PAA
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187
Query: 320 CGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 379
G+VG+K T GR + GV PL ++ +G L +V DA+ + AA+ G L
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAG 247
Query: 380 VSF 382
+
Sbjct: 248 LRL 250
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 189 bits (482), Expect = 1e-54
Identities = 112/317 (35%), Positives = 156/317 (49%), Gaps = 12/317 (3%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++++ + A SG ++ R VAE +A + ++ ++ F E L A
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADG---GLNAFTAVTAERALADAARIDADLA 57
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
G P+ L GV AVK+ D + T G K + P DA V RL GA+LVG
Sbjct: 58 AGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGAL 117
Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
NM E G + N HYG RNP+D ++I GGSS GSAA VAAGL P +LG D GS+R+P
Sbjct: 118 NMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVP 177
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS 376
A+LCGV G KPT+GR+ GV P ++ VG A +VED + Y + GP P
Sbjct: 178 ASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTD 237
Query: 377 LP-KVSFPLLKSATSISAIKLAKYDAWFNDCSD-DIRVCCSRAVDKLCERYGWKVVEVTI 434
P + + PLL IS +++A WF +D + R L V +
Sbjct: 238 RPAEPTVPLL--PAGISGLRIAVLGGWFQQNADPEALAAVGRVAKALGAT-----TIVEL 290
Query: 435 PNIEVMRLAHYLTIGSE 451
P+ E R A ++ SE
Sbjct: 291 PDAERARAAAFVITASE 307
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 180 bits (458), Expect = 6e-51
Identities = 103/294 (35%), Positives = 155/294 (52%), Gaps = 13/294 (4%)
Query: 143 KAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPIS 202
AY G+++P + + + + +P ++ F + E L A S R+++GEP
Sbjct: 14 AAYRRGELSPVEATQAVLDRI-DRRDP--AVNAFCLVDAEGALAAARASEERWRRGEPCG 70
Query: 203 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
+LDGV +++KD +PT G++ + P DA V RLR GA+L+GKT E G
Sbjct: 71 LLDGVPVSIKDIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFG 130
Query: 263 AGTSGI--NPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALC 320
G+ +P YG+ RNP+D GGSS G+AA VA G+ P+++G DGGGSVR+PA+ C
Sbjct: 131 --WKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFC 188
Query: 321 GVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKV 380
G GFKPTFGR+PL P T+ VG + TV DA ++ I P + P
Sbjct: 189 GTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDWSALPPPTT 247
Query: 381 SFPLLKSATSISAIKLAKY--DAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEV 432
SF L + +++A Y + D ++ ++AV +L G +V EV
Sbjct: 248 SF-LDALDRDVRGLRIA-YSPTLGYVDVDPEVAALVAQAVQRL-AALGARVEEV 298
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 176 bits (449), Expect = 7e-50
Identities = 95/273 (34%), Positives = 136/273 (49%), Gaps = 22/273 (8%)
Query: 176 FINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPC 235
F + + + A + G S L G+ ++VKD D + T G++ L P
Sbjct: 44 FTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVTRAGSRVLADAPPA 103
Query: 236 TGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY----DPSKITGGSSSG 291
DA V RLR GA+L+G+TNM E G+NPHYG RNP+ +I GGSSSG
Sbjct: 104 AADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSG 163
Query: 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILA 351
+A VA G+ ALG D GGS+R+PAALCG+ GFKPT R+PL G +PL+ T+ +G LA
Sbjct: 164 AAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLA 223
Query: 352 ATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDD-I 410
+V +V A + + + V +A + ++LA D D +
Sbjct: 224 RSVACCALVDAVL-----AGEEPVVP---------AARPLEGLRLAVPTTVVLDGLDATV 269
Query: 411 RVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLA 443
RA+ +L G + E+ P E+ LA
Sbjct: 270 AAAFERALKRL-SAAGAIIEEIAFP--ELAELA 299
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 173 bits (441), Expect = 6e-49
Identities = 95/259 (36%), Positives = 136/259 (52%), Gaps = 19/259 (7%)
Query: 194 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILV 253
R + G + LDG ++++KD D + PT G+ P DA V RLR GA+++
Sbjct: 36 RRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADALIVQRLRNAGAVII 95
Query: 254 GKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 313
GKT+M E G+NPHYG N DP++I GGSSSG+A VA G +A+G D GGSV
Sbjct: 96 GKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSV 155
Query: 314 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQ 371
R+PAAL G+VGFKPT RIPL G PL+ ++ +G LA TV D A + G P+P +
Sbjct: 156 RIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLE 215
Query: 372 QPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVE 431
V+ ++ P D D+ ++ L E+ G ++ +
Sbjct: 216 VLPVAGLRIGLP---------------KGYLLADMEPDVAAAFEASLAAL-EKAGARIAD 259
Query: 432 VTIPNIEVMRLAHYLTIGS 450
+ I ++ + RLA IGS
Sbjct: 260 LAIDDL-IARLAEATRIGS 277
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 167 bits (425), Expect = 2e-45
Identities = 93/241 (38%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 135 RWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFIN-YNEEDILKQATESTL 193
T+ AY +G +TPR V A + +P + +I+ E D+L QA
Sbjct: 6 DLTLASLRAAYRAGTLTPRAVVAALYARIAAVDDPEV----WIHLRPEADLLAQAAALEA 61
Query: 194 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTG-------DACCVMRLR 246
R P L GV AVKD ID + PTT C DA V RLR
Sbjct: 62 RDPAALP---LYGVPFAVKDNIDVAGLPTTAA---------CPAFAYTPERDATVVARLR 109
Query: 247 LCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALG 306
GAI++GKTN+ + G G YG RN +DP ++GGSSSGSA VA GL ALG
Sbjct: 110 AAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALG 169
Query: 307 VDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 366
D GS R+PAA +VG KPT G + GV+P T+ V + A TV+DA V A + G
Sbjct: 170 TDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAG 229
Query: 367 P 367
Sbjct: 230 F 230
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 157 bits (399), Expect = 3e-43
Identities = 72/153 (47%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 204 LDGVLIAVKDEIDCSPYPTTGGT-KWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
L G+ AVKD D + Y T G WL + T A V +L GA VGKT EL
Sbjct: 26 LAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDELA 85
Query: 263 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 322
+G N HYG NP P ++ GGSSSGSAA VA GL ALG D GGSVR PA+ CG+
Sbjct: 86 FSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGL 145
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGILAATVE 355
G +PT GRI L GV+PL + VG A +
Sbjct: 146 YGLRPTHGRISLEGVMPLAPSFDTVGWFARDIA 178
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 157 bits (398), Expect = 1e-42
Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 6/219 (2%)
Query: 146 SSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLD 205
+ G++T M+ E ++ + + + + + +A + R GE + +L
Sbjct: 19 ADGELTAPMLLEVYLQRIERLDS---HLRAYRVVLFDRARAEAEAAQQRLDAGERLPLL- 74
Query: 206 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGT 265
GV IA+KD++D + TT G+ T DA V RLR GA+++GKTN+ EL
Sbjct: 75 GVPIAIKDDVDVAGEVTTYGSA--GHGPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMP 132
Query: 266 SGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGF 325
+ +G RNP+DP++ GGSS GSAA VAAGL PVALG DGGGS+R+P+ CG+ G
Sbjct: 133 FTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGL 192
Query: 326 KPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 364
KP RI L + + G +A +V DA ++ A
Sbjct: 193 KPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDAT 231
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 156 bits (397), Expect = 2e-42
Identities = 75/190 (39%), Positives = 107/190 (56%), Gaps = 7/190 (3%)
Query: 179 YNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGD 238
++ E A ST R+ KGEP+ LDGV + +K+ I P GT P D
Sbjct: 47 FDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRGVPVPLGTAATDLP-PAAAD 105
Query: 239 ACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAA 298
A RLR GA+++ KT M + G +SG++ +G+ RNP+D + GGSS+G+ A AA
Sbjct: 106 APPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAA 165
Query: 299 GLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMV-GILAATVEDA 357
G P+ LG D GGSVR+PA CG+VG KP+ GRIP+ P G G + TV+DA
Sbjct: 166 GYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPID---P--PYTGRCAGPMTRTVDDA 220
Query: 358 LVVYAAINGP 367
++ + ++ P
Sbjct: 221 ALLMSVLSRP 230
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 155 bits (393), Expect = 3e-41
Identities = 85/197 (43%), Positives = 102/197 (51%), Gaps = 17/197 (8%)
Query: 181 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTG--- 237
EED+L QA R + E + L GV AVKD ID + PTT C
Sbjct: 10 EEDLLAQAAALDARDARPERLP-LYGVPFAVKDNIDVAGLPTTAA---------CPAFAY 59
Query: 238 ----DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSA 293
DA V LR GAI+VGKTN+ + G G YG RN +DP+ I+GGSSSGSA
Sbjct: 60 TPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSA 119
Query: 294 AVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAAT 353
VA GL P ALG D GS R+PAAL +VG KPT G + +GV+P ++ V I A T
Sbjct: 120 VAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALT 179
Query: 354 VEDALVVYAAINGPLPS 370
V DA V P
Sbjct: 180 VADAEQVLRIAAAPDAR 196
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 153 bits (389), Expect = 4e-41
Identities = 95/235 (40%), Positives = 128/235 (54%), Gaps = 10/235 (4%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
+ D + +SG +T + R + + E+S P ++ F E L +A E+ R
Sbjct: 19 GLTDQAYQLASGAVTSVELVRRSLRRI-EASQP--TLNAFRVVRAEAALAEAAEADRRRA 75
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
G+ + +L GV IAVKD++D + PT GT +V P T D+ V RLR GA++VGKT
Sbjct: 76 AGDRLPLL-GVPIAVKDDVDVAGVPTAFGTA--GEVPPATADSEVVRRLRAAGAVIVGKT 132
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVR 314
N ELG TSG P +G RNP+ GGSS GSAA VAAGL A+G DG GSVR
Sbjct: 133 NTCELGQWPFTSG--PAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVR 190
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP 369
+PAA +VG KP GRI + + + G LA TV DA ++ A +G P
Sbjct: 191 IPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHP 245
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 147 bits (372), Expect = 9e-39
Identities = 93/289 (32%), Positives = 139/289 (48%), Gaps = 11/289 (3%)
Query: 182 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCS-PYPTTGGTKWLHKVRPCTGDAC 240
D A K G+ L G+ + +KD ID + P PTT G+ L RP T DA
Sbjct: 51 PDAEADAAALDAERKAGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRP-TRDAF 109
Query: 241 CVMRLRLCGAILVGKTNMHEL-----GAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295
V RLR GA+++GK N+ E +SG + G+ RNPY + GSSSGS A
Sbjct: 110 LVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAA 169
Query: 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVE 355
VAAGL VA+G + GS+ PAA+ G+VG KPT G + G++P++ + G + TV
Sbjct: 170 VAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVA 229
Query: 356 DALVVYAAINGPLPSQQPTVSLPKVSFPLLK--SATSISAIKLAKYDAWFNDCSDDIRVC 413
DA V AI G P+ T S P + + A ++ +L + ++
Sbjct: 230 DAAAVLTAIAGGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYLGY-HPEVDAQ 288
Query: 414 CSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQK 462
RA+ +L + G V++V + A + + E L++YL+
Sbjct: 289 FERALAEL-KAAGAVVIDVVDLDDGDWGEAEKVVLLHEFKAGLNAYLRS 336
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 140 bits (354), Expect = 3e-36
Identities = 85/240 (35%), Positives = 117/240 (48%), Gaps = 16/240 (6%)
Query: 204 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHEL-- 261
L G +A+KD + + P G+ L P DA V RL GA +VGK +L
Sbjct: 88 LAGKTVALKDNVAVAGVPMMNGSSTLEGFVPSF-DATVVTRLLDAGATIVGKATCEDLCF 146
Query: 262 --GAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAAL 319
G+ TS P NP DP GGSSSGSAA+VAAG +A+G D GGS+R+P+A
Sbjct: 147 SGGSHTSDPGP----VHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAW 202
Query: 320 CGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGP--LPSQQPTVSL 377
CG+ G KPT G +P +G P+ T+ +G + ATV D ++ I G L +QP
Sbjct: 203 CGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPA--Q 260
Query: 378 PKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCS--RAVDKLCERYGWKVVEVTIP 435
P V + +K+ F + + V + A +L E G V EV+IP
Sbjct: 261 PPVDDYTAALDRGVKGLKIGILREGFGLPNSEPEVDEAVRAAAKRL-EDLGATVEEVSIP 319
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 135 bits (342), Expect = 1e-34
Identities = 73/201 (36%), Positives = 108/201 (53%), Gaps = 8/201 (3%)
Query: 135 RWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLR 194
R + + + A S D++ R AE +A + ++ NP ++ +++ E+ L QA
Sbjct: 7 RLSAAELAAAVRSRDVSAREAAEAALARL-DAVNP--AINAVVDHRPEEALAQADAVDAA 63
Query: 195 YKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVG 254
+G+ L GV + VK +D + + TT G + L K D+ V LR GA+++G
Sbjct: 64 RARGDDPGPLAGVPVTVKVNVDQAGFATTNGVR-LQKDLIAPADSPVVDNLRKAGAVIIG 122
Query: 255 KTNMHELG--AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
+TN T NP +G NP+DPS GGSS G+AA VAAG+ +A G D GGS
Sbjct: 123 RTNTPAFSYRWFTD--NPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGS 180
Query: 313 VRMPAALCGVVGFKPTFGRIP 333
+R PA CGV G +PT GR+P
Sbjct: 181 IRYPAYACGVHGLRPTLGRVP 201
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 132 bits (335), Expect = 1e-33
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 181 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDAC 240
+ +L +A E +GE L G+ A KD TT G+ P DA
Sbjct: 55 RDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAPTKGIRTTLGSPIFADQVP-QEDAI 113
Query: 241 CVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGL 300
V R+R GAI +GKTN E G G+ NP YG RNPYDPS+ GGSS G+AA +A +
Sbjct: 114 VVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRM 173
Query: 301 CPVALGVDGGGSVRMPAALCGVVGFKPTFGRIP 333
PVA G D GS+R PAA V GF+P+ GR+P
Sbjct: 174 LPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVP 206
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 131 bits (331), Expect = 4e-33
Identities = 67/189 (35%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 188 ATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRL 247
A + +GE L G+ + VK+ + + PTT G L P DA V RL+
Sbjct: 61 ARAADAARARGE-RGPLLGIPVTVKESFNVAGLPTTWGFPDLRDYVP-AEDAVAVARLKA 118
Query: 248 CGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGV 307
GA+++GKTN+ N YG NP+D ++ GGSS GSAA +AAG +++G
Sbjct: 119 AGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGS 178
Query: 308 DGGGSVRMPAALCGVVGFKPTFGRIPLSG-------VLPLNWTVGMVGILAATVEDALVV 360
D GGS+R+PA CGV KPT G +PL G LP + + G +A + D ++
Sbjct: 179 DIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALL 238
Query: 361 YAAINGPLP 369
+ GP P
Sbjct: 239 LDVMAGPDP 247
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 123 bits (309), Expect = 4e-30
Identities = 82/271 (30%), Positives = 124/271 (45%), Gaps = 11/271 (4%)
Query: 200 PISVLDGVLIAVKDEIDCSP-YPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNM 258
S L G+ + VKD + + PT+ GT L DA V +L+ GA ++GK NM
Sbjct: 133 KKSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIA-DQDATIVKQLKEEGAFVLGKANM 191
Query: 259 HELG-----AGTSGINPHYGVARNPYDPSKI-TGGSSSGSAAVVAAGLCPVALGVDGGGS 312
E SG + G NPY P K T GSSSGSA VVAA P+A+G + GS
Sbjct: 192 SEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADFAPLAVGTETTGS 251
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372
+ PAA VVG +P+ G + +G++PL T+ G +A TV+DA ++ A+ G
Sbjct: 252 IVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYDEKDV 311
Query: 373 PTVSLPKVSFPLLKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVE 431
T + SI +K K F+ D D+ R + + K + G + +
Sbjct: 312 MTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVDQQDENRKAVAEKIRKDLQDAGAILTD 371
Query: 432 VTIPNIEVMRLAHYLTIGSECSTSLSSYLQK 462
N + + T+ E +++ Y +
Sbjct: 372 YIQLNNG--GVDNLQTLEYEFKHNVNDYFSQ 400
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 120 bits (303), Expect = 2e-29
Identities = 77/224 (34%), Positives = 107/224 (47%), Gaps = 23/224 (10%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
+G ++ V E IA E+ NP + + + + +A G G
Sbjct: 26 AGRVSAAEVVEAAIARA-EAVNPALNALAYAAF--DRARDRAARP------GSQGGFFSG 76
Query: 207 VLIAVKDEIDCSPYPTTGGTK-WLHKVRPCTGDACCVMRLRLC-GAILVGKTNMHELGAG 264
V +KD +D + PT G+ W + D R L G I +GKT + E G
Sbjct: 77 VPTFIKDNVDVAGLPTMHGSDAWTPRPAKADSD---FARQFLATGLISLGKTQLPEFGFS 133
Query: 265 TSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVG 324
S +P G RNP++ G SS GSAA+VAAG+ P+A DGGGS+R+PAA CG+VG
Sbjct: 134 ASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVG 193
Query: 325 FKPTFGRIPLSG---VLPLNWTVGMV--GILAATVEDALVVYAA 363
KP+ GR+PL LP+N +V G+L TV D Y
Sbjct: 194 LKPSRGRLPLDPELRRLPVN----IVANGVLTRTVRDTAAFYRE 233
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 118 bits (298), Expect = 3e-29
Identities = 63/149 (42%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 204 LDGVLIAVKDEIDCSPYPTT-GGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
L G+ AVKD D Y T G W T A V+ + GA VGKT M E+
Sbjct: 27 LHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEMA 86
Query: 263 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 322
+G N HYG NP P ++ GGSSSGSA V A L +LG D GGSVR+PA+ CG+
Sbjct: 87 YSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGI 146
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGILA 351
GF+P+ G + GV+P+ + VG A
Sbjct: 147 FGFRPSHGAVSTVGVIPMAQSFDTVGWFA 175
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 117 bits (294), Expect = 3e-28
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 13/244 (5%)
Query: 134 HRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDI-LKQATEST 192
T+ D A G +T + + ++ + + K++ + N + I + +A +
Sbjct: 11 KELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDHE 70
Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPY-PTTGGTKWLHKVRPCTGDACCVMRLRLCGAI 251
+ K L G+ + +KD I+ + T+ GT L + + DA V +LR GA+
Sbjct: 71 RKIKG--VRGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHIS-SEDAFLVTKLREAGAV 127
Query: 252 LVGKTNMHELGAGTS-----GINPHYGVARNPYDPSKIT---GGSSSGSAAVVAAGLCPV 303
++GK NM EL S G + G NPY + GGSS+GSA VAA V
Sbjct: 128 ILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVV 187
Query: 304 ALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAA 363
++G + GS+ PA VVG KPT G I G++P ++ G A TV DA ++ +
Sbjct: 188 SVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGS 247
Query: 364 INGP 367
+ G
Sbjct: 248 LTGV 251
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 110 bits (276), Expect = 5e-26
Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 196 KKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGK 255
+K L + +KD S PT +K L +P + +A V +L GA V K
Sbjct: 29 EKNNKDGPLANCVFTIKDNFATSEGPTHASSKSLENFKP-SYNATVVQKLINAGAKPVAK 87
Query: 256 TNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRM 315
+ ELG G +G+ +G+ +NP D SK+ GGSSSGSAA + A+G D G SVR+
Sbjct: 88 VHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKNI-SFAIGSDTGDSVRL 146
Query: 316 PAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 360
PA+ G VGFKP++G I G+ ++ V V DA+++
Sbjct: 147 PASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIIL 191
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 91.4 bits (227), Expect = 1e-19
Identities = 92/310 (29%), Positives = 144/310 (46%), Gaps = 31/310 (10%)
Query: 144 AYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISV 203
A G +TP + + I ++ NP + Y E L++A + R G+P +
Sbjct: 12 AVQQGQVTPLELVTQAIYKAKKL-NPTLNAIVSERYEEA--LEEAKQ---RDFSGKPFA- 64
Query: 204 LDGVLIAVKD-EIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
GV I +KD + +T G++ L K T V RL G I++G++N E G
Sbjct: 65 --GVPIFLKDLGQELKGQLSTSGSR-LFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFG 121
Query: 263 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 322
+ +G P+D S+ GGSS G+AA+V++G+ +A DGGGS+R+PA+ G+
Sbjct: 122 FKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGL 181
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGI-LAATVEDA--LVVY---AAINGPLPSQQPTVS 376
+G KP+ GRIP+ W V L +V D L+ Y + P P T+S
Sbjct: 182 IGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFP--LATLS 239
Query: 377 LPKVSFPLLKSATSISAIKLAKY-DAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVT- 433
+ L + +K+A Y + + S D +AV L E+ G +VVE+
Sbjct: 240 KESLFQSLQRP------LKIAFYQRSPDGSPVSLDAAKALKQAVTFLREQ-GHEVVELEE 292
Query: 434 --IPNIEVMR 441
+ EVMR
Sbjct: 293 FPLDMTEVMR 302
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 91.2 bits (226), Expect = 2e-19
Identities = 71/226 (31%), Positives = 106/226 (46%), Gaps = 28/226 (12%)
Query: 202 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHEL 261
S L G+ + +KD I PT+ GT L K DA V L+ GA+++GKTNM E
Sbjct: 228 SALYGMPVLLKDNIGTKELPTSAGTVAL-KDWVIGKDATIVENLKANGALILGKTNMSEW 286
Query: 262 GAGT-----SGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
AG +G + G ++NPY + GSSSGSA + +A+G + GS+ P
Sbjct: 287 AAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTETNGSIITP 346
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI-----NGPLP-- 369
A+ VG+KP+ G + G++PL+ G L TV DA + A+ N PL
Sbjct: 347 ASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTSNPPLSTD 406
Query: 370 --------------SQQPTVSLPKVSFPLLKS-ATSISAIKLAKYD 400
S + T + K+ L K+ AT I I + +++
Sbjct: 407 ALKGKRIGLLADGESNEETAVIKKIKLDLQKAGATIIEGIAVGEFE 452
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 84.0 bits (208), Expect = 3e-17
Identities = 72/214 (33%), Positives = 97/214 (45%), Gaps = 21/214 (9%)
Query: 183 DILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGT---KWLHKVRPCTGDA 239
D LK+A S R +GE + LDG+ KD G+ K L R DA
Sbjct: 55 DALKEAEASDARRARGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQR----DA 110
Query: 240 CCVMRLRLCGAILVGKTNMHELGAGTSGINP-HYGVARNPYDPSKITG----GSSSGSAA 294
+ RLR GAI +GKTNM + G G+ YG A +PY+ + +T GSS+G+
Sbjct: 111 FTIERLRAAGAICLGKTNMPPMANG--GMQRGVYGRAESPYNAAYLTAPFASGSSNGAGT 168
Query: 295 VVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATV 354
AA L + S R PA+ G+ + P+ G I + G PL T+ +V A T+
Sbjct: 169 ATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTM 228
Query: 355 EDALVVYAAI-------NGPLPSQQPTVSLPKVS 381
D L V I G L QP V +PK S
Sbjct: 229 ADLLEVLDVIVADDPDTRGDLWRLQPWVPIPKAS 262
>gnl|CDD|147282 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. The
HRD4 gene was identical to NPL4, a gene previously
implicated in nuclear transport. Using a diverse set of
substrates and direct ubiquitination assays, analysis
revealed that HRD4/NPL4 is required for a poorly
characterized step in ER-associated degradation after
ubiquitination of target proteins but before their
recognition by the 26S proteasome. This region of the
protein contains possibly two zinc binding motifs
(Bateman A pers. obs.). Npl4p physically associates with
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex.
The Cdc48-Ufd1-Npl4 complex functions in the recognition
of several polyubiquitin-tagged proteins and facilitates
their presentation to the 26S proteasome for processive
degradation or even more specific processing.
Length = 147
Score = 32.7 bits (75), Expect = 0.17
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 88 VPLHPYDSEDLKEQEIKHI 106
PL P+D E LKE +IKH+
Sbjct: 39 SPLEPWDEEYLKEHKIKHM 57
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 32.0 bits (73), Expect = 0.87
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 21 SPPPPQPNQFYLTANVKAPRMAGF---LVKVFV-WLLESP--ILGGLLLYILKRNN---- 70
+ LT K + F L+ + V ++ ESP + GLL ++ RNN
Sbjct: 618 GSYKTNEDLPLLT---KREDIDLFSQTLLPILVSFVSESPFNEIIGLLGLLITRNNVSFV 674
Query: 71 --------LIHKFISYAEL 81
L+ IS AEL
Sbjct: 675 ATTKIGLSLLTTLISRAEL 693
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase. This enzyme deaminates
histidine to urocanic acid, the first step in histidine
degradation. It is closely related to phenylalanine
ammonia-lyase [Energy metabolism, Amino acids and
amines].
Length = 506
Score = 31.6 bits (72), Expect = 1.1
Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 26/134 (19%)
Query: 246 RLCGAILVGKTNMHELGAGTSGINPHYGVAR----------NPYDPSKITGGSSSGSAAV 295
+ AI+ + N L G SG+ V +P P K GS S +
Sbjct: 92 EVVRAIMALRLN--SLAKGYSGVRAE--VLDQLIALLNAGVHPVVPEK---GSVGASGDL 144
Query: 296 VAAGLCPVALGVDGGGSV-----RMPAA-LCGVVGFKPTFGRIPLSGVLPLNWTVGMVGI 349
A L +AL + G G RMPAA G +P G+ +N T M +
Sbjct: 145 --APLAHMALVLMGEGKAFFKGERMPAAEALAAAGLEPVTLA-AKEGLALINGTQAMTAL 201
Query: 350 LAATVEDALVVYAA 363
+ DA + A
Sbjct: 202 ALLALFDAEDLLRA 215
>gnl|CDD|222451 pfam13910, DUF4209, Domain of unknown function (DUF4209). This
short domain is found in bacteria and eukaryotes,
though not in yeasts or Archaea. It carries a highly
conserved RNxxxHG sequence motif.
Length = 97
Score = 29.2 bits (66), Expect = 1.3
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 15/76 (19%)
Query: 31 YLTANVKAPRMAGFLVKVFVWLLESP----ILGGLLLYILK-----------RNNLIHKF 75
L++ +K+ + A L + LL S LG L+ +L+ RN L H F
Sbjct: 16 LLSSGLKSNKNAPKLPSLLSELLASEELKTALGEALILLLRVLLGPPNGLNLRNVLWHGF 75
Query: 76 ISYAELEDSPLYVPLH 91
IS AE S L + L
Sbjct: 76 ISPAEFTPSYLSLLLL 91
>gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like,
N-terminal catalytic TIM barrel domain. This family of
bacterial enzymes is sequence-similar to
4-hydroxy-2-oxovalerate aldolase (HOA) but its exact
function is unknown. This family includes the
Bacteroides vulgatus Bvu_2661 protein and belongs to the
DRE-TIM metallolyase superfamily. DRE-TIM metallolyases
include 2-isopropylmalate synthase (IPMS),
alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members all
share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E) -
which is the basis for the domain name "DRE-TIM".
Length = 266
Score = 29.5 bits (67), Expect = 3.5
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 153 RMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV- 211
+ F+ + S K++ ++Y +DI S SV+D + +A
Sbjct: 54 AFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASG---------SVVDMIRVAFH 104
Query: 212 KDEID 216
K E D
Sbjct: 105 KHEFD 109
>gnl|CDD|224753 COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic
component [Inorganic ion transport and metabolism].
Length = 299
Score = 29.7 bits (67), Expect = 3.6
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 282 SKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLN 341
+ TGGSSS A VVA G V LG G+ A V P G
Sbjct: 157 ATYTGGSSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPVEVV-----YPEEGTG--- 208
Query: 342 WTVGMVGILAAT 353
V +L
Sbjct: 209 VNPSGVALLKKA 220
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains
without catalytic isopeptidase activity (non
metal-binding); eukaryotic. This family contains MPN
(also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains
variants lacking key residues in the JAB1/MPN/Mov34
metalloenzyme (JAMM) motif and are unable to coordinate
a metal ion. Comparisons of key catalytic and metal
binding residues explain why the MPN-containing proteins
Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation
initiation factor 3 subunits f and h do not show
catalytic isopeptidase activity. It has been proposed
that the MPN domain in these proteins has a primarily
structural function. Rpn7 is known to be critical for
the integrity of the 26S proteasome complex by
establishing a correct lid structure. It is necessary
for the incorporation/anchoring of Rpn3 and Rpn12 to the
lid and essential for viability and normal mitosis. CSN6
is a highly conserved protein complex with diverse
functions, including several important intracellular
pathways such as the ubiquitin/proteasome system, DNA
repair, cell cycle, developmental changes, and some
aspects of immune responses. It cleaves ubiquitin-like
protein Nedd8 (neural precursor cell expressed,
developmentally downregulated 8)) in the cullin 1 in
cells. EIF3f s a potent inhibitor of HIV-1 replication
as well as an important negative regulator of cell
growth and proliferation. EIF3h regulates cell growth
and viability, and that over-expression of the gene may
provide growth advantage to prostate, breast, and liver
cancer cells.
Length = 157
Score = 28.9 bits (65), Expect = 4.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 65 ILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIK 104
I K +N +H S E++PL + L P D ++ EI
Sbjct: 92 ISKSDNSLHSQFSL-ISEENPLILILDPSLQSDSEKLEIS 130
>gnl|CDD|119073 pfam10553, MSV199, MSV199 domain. This domain was identified by
Iyer and colleagues.
Length = 135
Score = 28.0 bits (63), Expect = 5.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 65 ILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIKHID 107
ILKRNN+ +K I Y + E LY +KE EIK +
Sbjct: 59 ILKRNNIPYKEIKYNDPEIE-LY--------PSIKE-EIKLLP 91
>gnl|CDD|234320 TIGR03706, exo_poly_only, exopolyphosphatase. It appears that a
single enzyme may act as both exopolyphosphatase (Ppx)
and guanosine pentaphosphate phosphohydrolase (GppA) in
a number of species. Members of the seed alignment use
to define this exception-level model are encoded
adjacent to a polyphosphate kinase 1 gene, and the
trusted cutoff is set high enough (425) that no genome
has a second hit. Therefore all members may be presumed
to at least share exopolyphospatase activity, and may
lack GppA activity. GppA acts in the stringent response
[Central intermediary metabolism, Phosphorus compounds].
Length = 300
Score = 28.7 bits (65), Expect = 7.2
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 37/105 (35%)
Query: 104 KHIDSD--LSPPEKVQQAIDCLPLSSEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIA 161
+ +DS LS E +++A++ L R+ L + + ++ R VA A
Sbjct: 38 EGLDSTGRLSE-EAIERALEAL----------KRFAEL--LRGFPVDEV--RAVA---TA 79
Query: 162 AVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
A+R++ N P + L++A G PI V+ G
Sbjct: 80 ALRDAKNGP------------EFLREAEAIL-----GLPIEVISG 107
>gnl|CDD|177866 PLN02220, PLN02220, delta-9 acyl-lipid desaturase.
Length = 299
Score = 28.6 bits (64), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 124 PLSSEKQPFFHR-WTVLDYSKAYSSG 148
+ EK+ FF R WT LD +A + G
Sbjct: 15 AVRKEKRAFFFRKWTRLDVVRASAVG 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,234,524
Number of extensions: 2582572
Number of successful extensions: 2497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2440
Number of HSP's successfully gapped: 49
Length of query: 506
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 405
Effective length of database: 6,457,848
Effective search space: 2615428440
Effective search space used: 2615428440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)