RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010596
(506 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 217 bits (553), Expect = 2e-65
Identities = 100/329 (30%), Positives = 163/329 (49%), Gaps = 7/329 (2%)
Query: 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATEST 192
+V + I P V + A+ E ++P + F+ ++E+ +K+A E
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAI-EETDP--TIKSFLALDKENAIKKAQELD 59
Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAIL 252
K + L G+ + +KD I + TT +K L ++ + +L A+L
Sbjct: 60 ELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEG-FVPIYESTVMEKLHKENAVL 118
Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
+GK NM E G S ++ NP+D + GGSS GSAA VAAGL P++LG D GGS
Sbjct: 119 IGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGS 178
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372
+R PAA CGVVG KPT+GR+ G++ ++ +G L V+D +V AI+G +
Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDS 238
Query: 373 PTVSLPKVSFPLLKSATSISAIKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVE 431
+ + V F I +K+A + + +DD++ AV+ L + G V E
Sbjct: 239 TSAPVDDVDFTSEIGK-DIKGLKVALPKEYLGEGVADDVKEAVQNAVETL-KSLGAVVEE 296
Query: 432 VTIPNIEVMRLAHYLTIGSECSTSLSSYL 460
V++PN + ++Y+ SE S++LS +
Sbjct: 297 VSLPNTKFGIPSYYVIASSEASSNLSRFD 325
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 166 bits (421), Expect = 1e-46
Identities = 90/326 (27%), Positives = 149/326 (45%), Gaps = 24/326 (7%)
Query: 139 LDYSK-----AYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTL 193
LD+ K + + + + + + +P + FI+ E +++
Sbjct: 4 LDFRKLTIEECLKLSEEEREKLPQLSLETI-KRLDP--HVKAFISVRENVSVEKK----- 55
Query: 194 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILV 253
G+ +A+KD I TT ++ L DA V +++ G ++V
Sbjct: 56 --------GKFWGIPVAIKDNILTLGMRTTCASRILENYES-VFDATVVKKMKEAGFVVV 106
Query: 254 GKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 313
GK N+ E G+S + RNP+D ++ GGSS GSAA V+AG+ ALG D GGSV
Sbjct: 107 GKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSV 166
Query: 314 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQP 373
R PA+LCGVVG+KPT+G + G++ ++ +G + TV DA ++ I+G
Sbjct: 167 RQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE-NDA 225
Query: 374 TVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVT 433
T KV F + + +D + + A+ L ER G KV V
Sbjct: 226 TTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLL-ERLGAKVERVK 284
Query: 434 IPNIEVMRLAHYLTIGSECSTSLSSY 459
IP+I+ +Y+ +E S++L+ +
Sbjct: 285 IPHIKYSVATYYVIAPAEASSNLARF 310
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 131 bits (328), Expect = 1e-33
Identities = 96/337 (28%), Positives = 146/337 (43%), Gaps = 10/337 (2%)
Query: 131 PF-FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQAT 189
PF + V D ++G++ + + ++ + ++ I N D LK+A
Sbjct: 1 PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAA 59
Query: 190 ESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCG 249
E + G L G+ + +KD I+ +P T+ G+ L RP DA V RLR G
Sbjct: 60 ERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD--DAYLVRRLRDAG 117
Query: 250 AILVGKTNMHELGAGT-----SGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVA 304
A+++GKTN+ E SG + G RNPY S GSSSGSA VAA L VA
Sbjct: 118 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 177
Query: 305 LGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 364
+G + GS+ PAA+ GVVG KPT G + G++P++++ G +A +V DA V AI
Sbjct: 178 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 237
Query: 365 NGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRV-CCSRAVDKLCE 423
G + T ++P + + ++ + +
Sbjct: 238 AGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELR 297
Query: 424 RYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYL 460
R G VV V +PN A + E L Y
Sbjct: 298 RAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYF 334
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 114 bits (286), Expect = 6e-28
Identities = 76/390 (19%), Positives = 138/390 (35%), Gaps = 22/390 (5%)
Query: 108 SDLSPPEKVQQAIDCLPLSSE--KQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRE 165
+ E + +A+ L + +L + SG+++P V ++
Sbjct: 11 KQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKA-W 69
Query: 166 SSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGG 225
N + +Y + + + + +L GV +++K+ + +T G
Sbjct: 70 EVNK--GTNCVTSYLTDCETQLS--------QAPRQGLLYGVPVSLKECFSYKGHDSTLG 119
Query: 226 TKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKIT 285
+ D V L+L GA+ TN+ + NP +G NP+ SK
Sbjct: 120 LSLNEGMPS-ESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSP 178
Query: 286 GGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNW--- 342
GGSS G A++ +G P+ LG D GGS+R P+A CG+ G KPT R+ SG+ +
Sbjct: 179 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQT 238
Query: 343 -TVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDA 401
+G +A VE + A+ P + ++ + + D
Sbjct: 239 AVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN 298
Query: 402 WFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQ 461
+ R + E G ++ NI L+ G S S+LQ
Sbjct: 299 YTMPSPAMRRALIET--KQRLEAAGHTLIPFLPNNIPYA--LEVLSAGGLFSDGGRSFLQ 354
Query: 462 KINCSDQGWDARVALSVYGSFSSQEYIKAQ 491
+ + S + + +
Sbjct: 355 NFKGDFVDPCLGDLILILRLPSWFKRLLSL 384
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 85.9 bits (211), Expect = 9e-19
Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 23/237 (9%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ E+ ++ F+ +++
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAI-EAREK--EVHAFVRHDKS-------------A 46
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
+ + L G+ + +KD ID + PT G++ +P + VM L+ GA ++GKT
Sbjct: 47 RAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDA-PVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
+ NP++ GGSSSGSAA V AG+ P+ALG GGSV P
Sbjct: 106 TTTAFASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRP 159
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQP 373
AA CG KP+F +P GV +W + VG+ A ED A+ G
Sbjct: 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGI 216
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 321
Score = 27.0 bits (60), Expect = 5.4
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 419 DKLCERY-----GWKVVEVTIPNIEV---MRLAHYLTIGSECSTSLSSYLQKINCSDQGW 470
D++C Y +V + N+ V + G C + L +CS GW
Sbjct: 1 DQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILRDCSVAGW 60
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 26.9 bits (58), Expect = 5.6
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 150 ITPRMVAERFIAAVRESSNPPMKMSFFINYNEE--DILKQATESTLRYKKGEPISVLDGV 207
I PR + + F + +K+S YNEE D+L +++ + R + + GV
Sbjct: 118 IIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 177
Query: 208 LIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSG 267
+I +EI + T ++ +M E
Sbjct: 178 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 237
Query: 268 I 268
+
Sbjct: 238 L 238
>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 323
Score = 26.7 bits (59), Expect = 6.5
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 419 DKLCERY-----GWKVVEVTIPNIEV---MRLAHYLTIGSECSTSLSSYLQKINCSDQGW 470
D +C Y V V N+ V + L G C + LQ C+ GW
Sbjct: 1 DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGW 60
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 317
Score = 26.6 bits (59), Expect = 7.7
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 419 DKLCERY-----GWKVVEVTIPNIEV---MRLAHYLTIGSECSTSLSSYLQKINCSDQGW 470
DK+C Y V +T N+ V L H G C+T+L L C+ +G
Sbjct: 1 DKICIGYQSTNSTETVDTLTETNVPVTHAKELLHTSHNGMLCATNLGHPLILDTCTIEGL 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,951,694
Number of extensions: 94451
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 10
Length of query: 506
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 417
Effective length of database: 1,185,626
Effective search space: 494406042
Effective search space used: 494406042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)