BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010597
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMY|A Chain A, Bhmt From Rat Liver
pdb|1UMY|B Chain B, Bhmt From Rat Liver
pdb|1UMY|C Chain C, Bhmt From Rat Liver
pdb|1UMY|D Chain D, Bhmt From Rat Liver
Length = 407
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 146 VTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSL 185
+E+ +++ N++ EKI G KV DI +V D+ D+L
Sbjct: 78 ASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDAL 117
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 438 DELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVK 480
D LG + S SG+ R D G P+ V +LL +NG M PY +
Sbjct: 92 DLLGRILSGSGEPR--DGG---PRIVPDQLLDINGAAMNPYAR 129
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 438 DELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVK 480
D LG + S SG+ R D G P+ V +LL +NG M PY +
Sbjct: 83 DLLGRILSGSGEPR--DGG---PRIVPDQLLDINGAAMNPYAR 120
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 438 DELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVK 480
D LG + S SG+ R D G P+ V +LL +NG M PY +
Sbjct: 83 DLLGRILSGSGEPR--DGG---PRIVPDQLLDINGAAMNPYAR 120
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 438 DELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVK 480
D LG + S SG+ R D G P+ V +LL +NG M PY +
Sbjct: 83 DLLGRILSGSGEPR--DGG---PRIVPDQLLDINGAAMNPYAR 120
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 438 DELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVK 480
D LG + S SG+ R D G P+ V +LL +NG M PY +
Sbjct: 92 DLLGRILSGSGEPR--DGG---PRIVPDQLLDINGAAMNPYAR 129
>pdb|2G8S|A Chain A, Crystal Structure Of The Soluble Aldose Sugar
Dehydrogenase (Asd) From Escherichia Coli In The
Apo-Form
pdb|2G8S|B Chain B, Crystal Structure Of The Soluble Aldose Sugar
Dehydrogenase (Asd) From Escherichia Coli In The
Apo-Form
Length = 353
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 425 GKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK------WVDGELLQLNGKGMGPY 478
GK RL ++G+ PD+ + + I +G RNP+ W + L +G G
Sbjct: 164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGXAXNPWSNALWLNEHGPRGGDE 223
Query: 479 VKGADLGFLYVVPEQSFLVLFNRLKLPD 506
+ G Y P ++ + ++ K+P+
Sbjct: 224 INIPQKGKNYGWPLATWGINYSGFKIPE 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,042,743
Number of Sequences: 62578
Number of extensions: 584617
Number of successful extensions: 1101
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 21
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)