BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010597
(506 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1
PE=1 SV=1
Length = 684
Score = 305 bits (781), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 198/503 (39%), Positives = 287/503 (57%), Gaps = 40/503 (7%)
Query: 26 VGWWVGYSKDSDDPFGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESY 85
VGWW G S+D DPFG ++QI GR+VAR+Y+PRQL T++ G PLFEIF+ D + +Y
Sbjct: 196 VGWWSGISEDVKDPFGLIVQITAEHGRYVARSYNPRQLSTSAAGAPLFEIFLTLDGKGNY 255
Query: 86 VMQVVHLKQAK-----GTSTNSTSSPSKSTKSPSTSEVENASVVDVQGTKVKEERSDEKG 140
Q V+LK + T + T +P + SP E V+ + + D+
Sbjct: 256 KKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDTGNLAVESSEDEESDNSDDDSD 315
Query: 141 INIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQD--------- 191
+ E G +S FL++ IPG+KVKVM + V D D + ++I+
Sbjct: 316 LLEES---SGFQS---FLRDMIPGVKVKVMKVTAPGRV--DKDFISKVIEQIADEEDEEN 367
Query: 192 -GEEAESSDSEGEADDIEEIQPDEVALEGANEASEDE---KELDTKVFIGGVVHNNEDAP 247
+ + + +I+E D + LE + D +E+ K IG +V
Sbjct: 368 DLDIEDIDVEDDTKAEIDEKNAD-IELESVTDEIIDNNGGREIAVKFVIGDIVDRLSGNQ 426
Query: 248 TKDEYVRMPADVKDLEKDSFVLHVPAKSLDYDHTGESKMSKL---KVAALAAQGVSELMP 304
E +R PA+++ +E SF L + K L+ + + + L K + + + + +M
Sbjct: 427 PLKESLRSPANLESVENSSFYLRL-EKDLNVKESKGVEGTTLVDGKGSRQSRRRIENIMG 485
Query: 305 FDVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSRLSEYTTFSRINTSEGDLDPFDGL 364
D+AK+ K S K+ +DV E+L L +SQAQ + +LS T F RI+ + LDP DGL
Sbjct: 486 -DLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPS-LDPLDGL 543
Query: 365 YVGAFGPYGTEVVQLRRKYGQWSG--EGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRA 422
Y+GA G Y +EV+ L+RK+GQW G E +K +D+EF+EYVEAVKLTGD VPAG+V FRA
Sbjct: 544 YIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAGKVAFRA 603
Query: 423 KIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGA 482
KIG+ LP++G P+E GV+A Y GQGR+AD GFRNP+WVDGEL+ L+GK YVKG
Sbjct: 604 KIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGK----YVKGG 659
Query: 483 D-LGFLYVVPEQSFLVLFNRLKL 504
+GF+Y PE F++ FNRL+L
Sbjct: 660 PVVGFVYWAPEYHFVMFFNRLRL 682
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 37.4 bits (85), Expect = 0.29, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 10/192 (5%)
Query: 92 LKQAKGTSTNSTSSPS-KSTKSPSTSEVENASVVDVQGTKVKEERSD-EKGINIEGVTEE 149
+ QAK S + + KS KSP++ + E AS ++ KV ++ EKG ++ + +
Sbjct: 113 ISQAKSEKATSLQAKAEKSPKSPNSVKAEKASSYQMKSEKVPSSPAEAEKGPSLL-LKDM 171
Query: 150 GIKSVINFLKEKIPGLKVKVMNIDITA---EVTDDADSLKQLIQDGEEAESSDSEGEADD 206
K+ + + +KIP V ++I A E +S + Q + DS+ A
Sbjct: 172 RQKTELQQIGKKIPSSFTSVDKVNIEAVGGEKCALQNSPRSQKQQTCTDNTGDSDDSASG 231
Query: 207 IEEIQPDEVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADVKDLEKDS 266
IE++ D ++ E+ E+D ++ +E A T ++ + + + LE+D
Sbjct: 232 IEDVSDDLSKMKNDESNKENSSEMD---YLENATVIDESALTPEQRLGLKQAEERLERDH 288
Query: 267 FVLHVPAKSLDY 278
+ + +S +Y
Sbjct: 289 -IFRLEKRSPEY 299
>sp|Q5UQW6|YR387_MIMIV Uncharacterized protein R387 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R387 PE=1 SV=1
Length = 265
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 132 KEERSDEKGINIEGVTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQD 191
+ SD+KG+N+ T ++ I+ L ++I LK ++ N+ + A T +SL+Q + D
Sbjct: 24 RNHMSDQKGVNVNNQTYNMLQQQISSLNQQILFLKQQISNLHVPAP-TSTVNSLRQTVSD 82
Query: 192 GEEAESS 198
+ S+
Sbjct: 83 INQQVST 89
>sp|B2RYN2|FBX31_RAT F-box only protein 31 OS=Rattus norvegicus GN=Fbxo31 PE=2 SV=1
Length = 507
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 363 GLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRA 422
GL+ G +G +G E+V L S G ++ K+TGD N+PAG+ T
Sbjct: 289 GLFKGTYGSHGLEIVML-------SFHGSRA---------RGTKITGDPNIPAGQQTVEI 332
Query: 423 KIGKGSRLPN 432
+ + +LP+
Sbjct: 333 DLQRRIQLPD 342
>sp|Q3TQF0|FBX31_MOUSE F-box only protein 31 OS=Mus musculus GN=Fbxo31 PE=1 SV=1
Length = 507
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 363 GLYVGAFGPYGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRA 422
GL+ G +G +G E+V L S G ++ K+TGD N+PAG+ T
Sbjct: 289 GLFKGTYGSHGLEIVML-------SFHGSRA---------RGTKITGDPNIPAGQQTVEI 332
Query: 423 KIGKGSRLPN 432
+ + +LP+
Sbjct: 333 DLQRRIQLPD 342
>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio GN=lamc1 PE=2 SV=2
Length = 1593
Score = 32.7 bits (73), Expect = 6.3, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 152 KSVINFLKEKIPGLKVKVMNIDITAEVTDDADSLKQLIQDGEEAESSDSEGEADDIEEIQ 211
+++IN +E++ K + +DI T + L+ + S + +AD IE+I
Sbjct: 1126 ENLINTAREELDKAKEAISKVDIKIPTTSGDPNNMTLLAEEARKLSEKHKADADQIEKIA 1185
Query: 212 PD------------EVALEGANEASEDEKELDTKVFIGGVVHNNEDAPTKDEYVRMPADV 259
D + AL+G N+ S D EL+ K Y+
Sbjct: 1186 KDANDTSTKAYNMLKKALDGENKTSSDIDELNRK------------------YLEAKDLA 1227
Query: 260 KDLEKDSFVLHVPAK 274
K+LEK + +H A+
Sbjct: 1228 KNLEKQAAKVHAEAE 1242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,304,942
Number of Sequences: 539616
Number of extensions: 8752257
Number of successful extensions: 32080
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 349
Number of HSP's that attempted gapping in prelim test: 31064
Number of HSP's gapped (non-prelim): 1138
length of query: 506
length of database: 191,569,459
effective HSP length: 122
effective length of query: 384
effective length of database: 125,736,307
effective search space: 48282741888
effective search space used: 48282741888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)