Query 010597
Match_columns 506
No_of_seqs 110 out of 127
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 02:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12014 DUF3506: Domain of un 100.0 3.8E-50 8.2E-55 362.0 13.5 129 340-472 1-134 (134)
2 KOG1832 HIV-1 Vpr-binding prot 71.3 2.4 5.3E-05 50.1 2.1 22 52-75 1344-1365(1516)
3 PF13037 DUF3898: Domain of un 57.3 3.6 7.7E-05 36.3 0.1 45 3-63 22-76 (91)
4 PF04931 DNA_pol_phi: DNA poly 51.2 12 0.00026 43.1 3.0 11 149-159 623-633 (784)
5 COG2602 Beta-lactamase class D 45.9 11 0.00025 38.6 1.6 29 19-47 195-228 (254)
6 KOG0316 Conserved WD40 repeat- 33.5 25 0.00055 36.5 1.8 24 359-382 45-68 (307)
7 KOG2387 CTP synthase (UTP-ammo 27.7 37 0.0008 38.0 2.0 53 358-418 39-93 (585)
8 PF09363 XFP_C: XFP C-terminal 27.1 35 0.00076 34.2 1.5 29 144-173 44-72 (203)
9 PF08255 Leader_Trp: Trp-opero 21.5 45 0.00097 20.6 0.7 6 24-29 6-11 (14)
10 PF10446 DUF2457: Protein of u 21.2 63 0.0014 35.9 2.2 45 186-230 47-91 (458)
No 1
>PF12014 DUF3506: Domain of unknown function (DUF3506); InterPro: IPR021894 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif.
Probab=100.00 E-value=3.8e-50 Score=362.02 Aligned_cols=129 Identities=43% Similarity=0.763 Sum_probs=115.6
Q ss_pred CCcccceEee-eeeCCCCCCCCCCceEEeccCCCCcEEEEEEEecCCCCCCCC--CCCccccceEEEEEEEcCCCCccCe
Q 010597 340 SRLSEYTTFS-RINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSGEGE--KSSDMEFFEYVEAVKLTGDLNVPAG 416 (506)
Q Consensus 340 ~~l~~~tt~~-rIytPt~~~dP~~GLwVG~Yg~HG~EfL~L~~~~g~~~~~d~--~~s~~~~~~~LeAVKLTGDpNVPrG 416 (506)
+.++||+|++ ++||||+ .|||+|||||+||+||||||+|+|++++|.++++ ..++.+|+++|||||||||||||||
T Consensus 1 ~~~ttfstl~p~lytpt~-~~P~~GiwVGdyg~hG~Efl~l~q~~~~~~~~~~~~~~~~~~~~~~leAiKLTGDpNVPrG 79 (134)
T PF12014_consen 1 EGVTTFSTLDPELYTPTP-EKPFRGIWVGDYGPHGCEFLLLHQPDGQWDEDDGSKEPSDREFRGRLEAIKLTGDPNVPRG 79 (134)
T ss_pred CCceEEEecChhccCCCC-CCCccceEEcccCCCCeEEEEEEccCCCccccccccccccccccceEEEEEecCCCCCcCc
Confidence 3567777777 8889999 9999999999999999999999999999987766 3578899999999999999999999
Q ss_pred eEEEEEE-cCCCCCCCCCCCCCCCCCceeE-EEeeeeecCCCCCCCceeeeEEEEEcC
Q 010597 417 EVTFRAK-IGKGSRLPNRGKFPDELGVVAS-YSGQGRIADFGFRNPKWVDGELLQLNG 472 (506)
Q Consensus 417 evTF~A~-ig~~~~lp~~G~~peel~~~aR-vkg~G~VA~~GF~np~wI~gqLilis~ 472 (506)
||||+|+ ||+++++ +++.++++.++| ||||||||++||+|++||+|||||||+
T Consensus 80 evtF~A~DiG~~~~i---~~a~~~~f~G~r~vk~~G~vA~~GF~~~~~id~eLilis~ 134 (134)
T PF12014_consen 80 EVTFRADDIGPGGRI---RVAHEGPFPGARRVKGQGHVAEPGFRNDKWIDGELILISG 134 (134)
T ss_pred cEEEEecccCCCccc---ccccCCCCCceEEEecCCeEcCcCcCCCcceeeEEEEecC
Confidence 9999999 9999998 444455555666 999999999999999999999999985
No 2
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.34 E-value=2.4 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=13.7
Q ss_pred eeeeccCChhhhcccCCCCceEEE
Q 010597 52 RFVARNYSPRQLVTASPGTPLFEI 75 (506)
Q Consensus 52 RyVAkSYspRQL~ta~~G~PlFEI 75 (506)
-|=|+-||+ |+|--.--|||-.
T Consensus 1344 Tf~a~dYs~--iaTi~v~R~~~Dl 1365 (1516)
T KOG1832|consen 1344 TFDAIDYSD--IATIPVDRCLLDL 1365 (1516)
T ss_pred ccccccccc--ceeeecccchhhh
Confidence 456777776 5665555666654
No 3
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=57.31 E-value=3.6 Score=36.31 Aligned_cols=45 Identities=31% Similarity=0.536 Sum_probs=34.8
Q ss_pred cccchhhhhhhHHHHHHhhcccceeeeeeecCCCCCCccceEEecCCCceeee----------ccCChhhh
Q 010597 3 LPELDLKMKLSLMLIIIVFMSWKVGWWVGYSKDSDDPFGRLIQIKPGVGRFVA----------RNYSPRQL 63 (506)
Q Consensus 3 ~~~~~~~~~~~~~~~r~~ag~gLVGWW~G~s~d~~DP~GrIIrIsp~~GRyVA----------kSYspRQL 63 (506)
-|++.+||||--+-+|-. + . =||.=|||.-=+||||+ |++||-.+
T Consensus 22 ~Pe~elk~KLd~~~Vk~l-----------L----a-DfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEf 76 (91)
T PF13037_consen 22 QPEIELKFKLDHTTVKGL-----------L----A-DFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEF 76 (91)
T ss_pred CCCceEEEecCceehhHH-----------H----H-hhccceeEEEECCEEEEEEEcceEEEccCCCceee
Confidence 389999999987666644 1 1 28999999999999997 77777544
No 4
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=51.21 E-value=12 Score=43.10 Aligned_cols=11 Identities=18% Similarity=0.619 Sum_probs=7.6
Q ss_pred hhhHHHHhhhc
Q 010597 149 EGIKSVINFLK 159 (506)
Q Consensus 149 eG~~~~~nflk 159 (506)
+|+.-+++.|.
T Consensus 623 ~~l~~ll~vl~ 633 (784)
T PF04931_consen 623 SGLQLLLDVLD 633 (784)
T ss_pred HHHHHHHHHhc
Confidence 66777777766
No 5
>COG2602 Beta-lactamase class D [Defense mechanisms]
Probab=45.88 E-value=11 Score=38.64 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=22.3
Q ss_pred Hhhcccce-----eeeeeecCCCCCCccceEEec
Q 010597 19 IVFMSWKV-----GWWVGYSKDSDDPFGRLIQIK 47 (506)
Q Consensus 19 ~~ag~gLV-----GWW~G~s~d~~DP~GrIIrIs 47 (506)
=+||+|.+ |||||+-+-..++|.---+|.
T Consensus 195 GKTG~~~~~~~~~GWfVG~v~~~~~~y~FA~nld 228 (254)
T COG2602 195 GKTGTGIVNTKNLGWFVGWVETNENKYVFATNLD 228 (254)
T ss_pred ecccccccCCCCceeEEEEEEeCCcEEEEEEeec
Confidence 36888875 899999999888886555554
No 6
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.53 E-value=25 Score=36.54 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=20.5
Q ss_pred CCCCceEEeccCCCCcEEEEEEEe
Q 010597 359 DPFDGLYVGAFGPYGTEVVQLRRK 382 (506)
Q Consensus 359 dP~~GLwVG~Yg~HG~EfL~L~~~ 382 (506)
+|++|.-+-+|++||-|+|-+.-.
T Consensus 45 Np~rg~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 45 NPLRGALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred cccccceeeeecCCCceeeecccc
Confidence 589999999999999999975443
No 7
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=27.69 E-value=37 Score=38.00 Aligned_cols=53 Identities=30% Similarity=0.538 Sum_probs=38.6
Q ss_pred CCCCCceEEeccCC--CCcEEEEEEEecCCCCCCCCCCCccccceEEEEEEEcCCCCccCeeE
Q 010597 358 LDPFDGLYVGAFGP--YGTEVVQLRRKYGQWSGEGEKSSDMEFFEYVEAVKLTGDLNVPAGEV 418 (506)
Q Consensus 358 ~dP~~GLwVG~Yg~--HG~EfL~L~~~~g~~~~~d~~~s~~~~~~~LeAVKLTGDpNVPrGev 418 (506)
-|||=-+=-|+++| ||--|++ ++| .+-.-|+--++|.-.|+||+|.|++-|.+
T Consensus 39 IDPYlN~DAGTmSPyEHGEVfVL---DDG-----gEvDLDLGNYERfldi~Lt~dNNITtGKi 93 (585)
T KOG2387|consen 39 IDPYLNIDAGTMSPYEHGEVFVL---DDG-----GEVDLDLGNYERFLDITLTRDNNITTGKI 93 (585)
T ss_pred eccceeccCcccCccccceEEEe---cCC-----ceecccccchhhhccceeeccCCcccchH
Confidence 47888888899998 8876665 212 11123455677888999999999999976
No 8
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=27.11 E-value=35 Score=34.15 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=19.8
Q ss_pred cchhhhhhHHHHhhhccCCCCceEEEEEee
Q 010597 144 EGVTEEGIKSVINFLKEKIPGLKVKVMNID 173 (506)
Q Consensus 144 ~s~~~eG~~~~~nflkd~iP~~kvKV~kV~ 173 (506)
+..|.|-|+ -..+|+..+|++||+|.||+
T Consensus 44 d~pT~E~lA-A~~lLr~~~P~lkiRvVNVv 72 (203)
T PF09363_consen 44 DVPTLEVLA-AASLLREHFPELKIRVVNVV 72 (203)
T ss_dssp HHHHHHHHH-HHHHHHHT--T--EEEEEES
T ss_pred chhhHHHHH-HHHHHHHhccCceEEEEEEe
Confidence 445567774 46899999999999999998
No 9
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=21.51 E-value=45 Score=20.58 Aligned_cols=6 Identities=50% Similarity=1.531 Sum_probs=5.1
Q ss_pred cceeee
Q 010597 24 WKVGWW 29 (506)
Q Consensus 24 gLVGWW 29 (506)
.|.|||
T Consensus 6 ~L~~WW 11 (14)
T PF08255_consen 6 SLHGWW 11 (14)
T ss_pred EEeeEE
Confidence 588999
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=21.21 E-value=63 Score=35.90 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHhhhcCccccCCCCCCCcccccccCcchhhcccCCCCccccccc
Q 010597 186 KQLIQDGEEAESSDSEGEADDIEEIQPDEVALEGANEASEDEKEL 230 (506)
Q Consensus 186 eq~~~ed~e~e~~~~e~~~~~~~~e~~~~~~~e~~~d~~e~~~~~ 230 (506)
|+-.+|++++++..++++.+++++++.++.+++++.+..++....
T Consensus 47 EEA~~EEdededd~~d~DddD~d~ddddddeDe~~De~dD~d~~~ 91 (458)
T PF10446_consen 47 EEAEEEEDEDEDDEDDDDDDDEDDDDDDDDEDEDDDEEDDDDSTV 91 (458)
T ss_pred HHHhhcccccccccccccccccccccccccccccccccccccccc
Done!