Query 010597
Match_columns 506
No_of_seqs 110 out of 127
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 10:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1loi_A Cyclic 3',5'-AMP specif 47.6 3.7 0.00013 27.4 -0.1 15 17-31 8-22 (26)
2 2ca6_A RAN GTPase-activating p 45.7 5.3 0.00018 38.5 0.6 23 149-173 289-311 (386)
3 3g4p_A Beta-lactamase OXA-24; 25.8 20 0.00068 34.3 1.0 28 20-47 187-220 (244)
4 3isg_A Penicillinase, beta-lac 25.3 29 0.001 33.4 2.1 22 26-47 203-225 (251)
5 1whm_A Cylindromatosis tumor s 20.8 23 0.00077 30.3 0.2 15 26-42 41-55 (92)
6 2ivw_A PILP pilot protein; lip 18.4 2.4E+02 0.0081 24.6 6.2 51 40-95 46-96 (113)
7 3egr_A Phenylacetate-COA oxyge 17.2 1.3E+02 0.0043 25.9 4.0 26 67-93 4-29 (96)
8 2k7i_A UPF0339 protein ATU0232 16.7 62 0.0021 27.0 2.0 22 60-86 15-36 (83)
9 4gbs_A Putative lipoprotein; P 15.9 68 0.0023 29.3 2.2 26 71-96 154-184 (200)
10 1z6h_A Biotin/lipoyl attachmen 15.5 1.2E+02 0.004 22.5 3.2 23 41-75 45-67 (72)
No 1
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=47.55 E-value=3.7 Score=27.36 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=10.1
Q ss_pred HHHhhcccceeeeee
Q 010597 17 IIIVFMSWKVGWWVG 31 (506)
Q Consensus 17 ~r~~ag~gLVGWW~G 31 (506)
-.-+.-..|||||--
T Consensus 8 cetcskpwlvgwwdq 22 (26)
T 1loi_A 8 CETCSKPWLVGWWDQ 22 (26)
T ss_dssp HHTSSCTTGGGGHHH
T ss_pred HHhcCCchhhhhHHH
Confidence 334455789999953
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=45.73 E-value=5.3 Score=38.52 Aligned_cols=23 Identities=17% Similarity=0.606 Sum_probs=12.7
Q ss_pred hhhHHHHhhhccCCCCceEEEEEee
Q 010597 149 EGIKSVINFLKEKIPGLKVKVMNID 173 (506)
Q Consensus 149 eG~~~~~nflkd~iP~~kvKV~kV~ 173 (506)
+|+..+...++...|.++ .+++.
T Consensus 289 ~g~~~l~~~l~~~l~~L~--~L~l~ 311 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLL--FLELN 311 (386)
T ss_dssp HHHHHHHHHHHHHCTTCC--EEECT
T ss_pred HHHHHHHHHHHhcCCCce--EEEcc
Confidence 455556666655556544 55554
No 3
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem, resistance, HYDR; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A* 3pae_A* 3pag_A*
Probab=25.78 E-value=20 Score=34.35 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=18.9
Q ss_pred hhcccc-----eeeeeeecCCCCCCc-cceEEec
Q 010597 20 VFMSWK-----VGWWVGYSKDSDDPF-GRLIQIK 47 (506)
Q Consensus 20 ~ag~gL-----VGWW~G~s~d~~DP~-GrIIrIs 47 (506)
|||++- .|||+|+.+-.++|. =-.++|.
T Consensus 187 KTGta~~~~~~~gwfvG~~~~~~~~~~~fa~~i~ 220 (244)
T 3g4p_A 187 KSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLE 220 (244)
T ss_dssp EEEEECSSSSEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEeccccCCCCcEEEEEEEEcCCCCEEEEEEEec
Confidence 567763 799999998866663 2334454
No 4
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance; HET: KCX DRW; 1.40A {Escherichia coli} SCOP: e.3.1.1 PDB: 1m6k_A*
Probab=25.26 E-value=29 Score=33.36 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=16.5
Q ss_pred eeeeeee-cCCCCCCccceEEec
Q 010597 26 VGWWVGY-SKDSDDPFGRLIQIK 47 (506)
Q Consensus 26 VGWW~G~-s~d~~DP~GrIIrIs 47 (506)
.|||+|+ ..-.+.+|=-.+.|.
T Consensus 203 ~gWFvG~vap~~~p~~~~av~ie 225 (251)
T 3isg_A 203 NGWFEGFIISKSGHKYVFVSALT 225 (251)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEE
T ss_pred eEEEEEEEEEcCCCeEEEEEEEE
Confidence 7999999 777777766555554
No 5
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=20.81 E-value=23 Score=30.25 Aligned_cols=15 Identities=47% Similarity=1.125 Sum_probs=11.5
Q ss_pred eeeeeeecCCCCCCccc
Q 010597 26 VGWWVGYSKDSDDPFGR 42 (506)
Q Consensus 26 VGWW~G~s~d~~DP~Gr 42 (506)
-|+|+|+ ..|+|.|.
T Consensus 41 ~G~wVGV--elDEP~Gk 55 (92)
T 1whm_A 41 LGYFVGV--DMDNPIGN 55 (92)
T ss_dssp TCCEEEE--EESSSCCC
T ss_pred CCeEEEE--EcCCCCCC
Confidence 3899999 38888753
No 6
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=18.44 E-value=2.4e+02 Score=24.63 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=32.1
Q ss_pred ccceEEecCCCceeeeccCChhhhcccCCCCceEEEEEEeeCCCCeeeEEEEEEec
Q 010597 40 FGRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQA 95 (506)
Q Consensus 40 ~GrIIrIsp~~GRyVAkSYspRQL~ta~~G~PlFEIf~~kd~~~~Y~~QaV~Lk~~ 95 (506)
=|.|.|+.+ |-|+++.|=-=.=.| ....=|-|++ .|..|.++-.-+-|.=.
T Consensus 46 dG~vyrVk~--G~yiG~N~GrI~~It-~~~I~l~E~v--~Dg~G~W~eR~~~L~L~ 96 (113)
T 2ivw_A 46 EGYVYTVGV--GNYLGQNYGRIESIT-DDSIVLNELI--EDSTGNWVSRKAELLLN 96 (113)
T ss_dssp TTEEEEECS--SEEETTTEEEEEEEE-TTEEEEEEEE--ECTTSSEEEEEEEEECC
T ss_pred CCcEEEEcc--CCEeccCCCEEEEEe-CCeEEEEEEE--ECCCCCEEEEeeEEEcc
Confidence 456666654 556666663221122 2345577775 69999999999888753
No 7
>3egr_A Phenylacetate-COA oxygenase subunit PAAB; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; 2.65A {Ralstonia eutropha JMP134}
Probab=17.16 E-value=1.3e+02 Score=25.92 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=20.1
Q ss_pred CCCCceEEEEEEeeCCCCeeeEEEEEE
Q 010597 67 SPGTPLFEIFVVKDNEESYVMQVVHLK 93 (506)
Q Consensus 67 ~~G~PlFEIf~~kd~~~~Y~~QaV~Lk 93 (506)
....|+||+|+ .++.|.+...+--|.
T Consensus 4 ~~~~~~wEVFv-r~~~g~~h~HvGSvh 29 (96)
T 3egr_A 4 QKEWPLWEVFV-RSKQGLEHKHCGSLH 29 (96)
T ss_dssp CCCCCEEEEEE-ECTTCSSCEEEEEEE
T ss_pred CCCCccEEEEE-eCCCCCCceeeeccc
Confidence 35689999996 588888887765554
No 8
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=16.74 E-value=62 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=12.1
Q ss_pred hhhhcccCCCCceEEEEEEeeCCCCee
Q 010597 60 PRQLVTASPGTPLFEIFVVKDNEESYV 86 (506)
Q Consensus 60 pRQL~ta~~G~PlFEIf~~kd~~~~Y~ 86 (506)
-||+...=+| |||| ++.+|.|.
T Consensus 15 ~~~~~~~Mag---FEi~--k~~~Gq~r 36 (83)
T 2k7i_A 15 ENLYFQGMYK---FEIY--QDKAGEYR 36 (83)
T ss_dssp -------CCE---EEEE--ECTTSCEE
T ss_pred cccccccccc---EEEE--EcCCCCEE
Confidence 5788877677 9999 57888884
No 9
>4gbs_A Putative lipoprotein; PF14064 family, transport, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MLY; 2.48A {Bacteroides fragilis}
Probab=15.86 E-value=68 Score=29.26 Aligned_cols=26 Identities=12% Similarity=0.561 Sum_probs=21.1
Q ss_pred ceEE----EEEEeeCCCCe-eeEEEEEEecC
Q 010597 71 PLFE----IFVVKDNEESY-VMQVVHLKQAK 96 (506)
Q Consensus 71 PlFE----If~~kd~~~~Y-~~QaV~Lk~~~ 96 (506)
|++. +||+|.+||.| ++|+.-+.-++
T Consensus 154 ~~~~~~~~vyVirtadG~YaKlq~~syyn~~ 184 (200)
T 4gbs_A 154 PIYTPSNXVYLLRMXDDTMAAIRLVSYMNAA 184 (200)
T ss_dssp CEEEECCCCEEEECTTSCEEEEEEEEEECTT
T ss_pred eEEcCCCcEEEEEeCCCCEEEEEEEEeECCC
Confidence 4665 89999999999 99988777543
No 10
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=15.53 E-value=1.2e+02 Score=22.45 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=0.0
Q ss_pred cceEEecCCCceeeeccCChhhhcccCCCCceEEE
Q 010597 41 GRLIQIKPGVGRFVARNYSPRQLVTASPGTPLFEI 75 (506)
Q Consensus 41 GrIIrIsp~~GRyVAkSYspRQL~ta~~G~PlFEI 75 (506)
|+|.++....|.+| .+|.|||+|
T Consensus 45 G~v~~~~v~~G~~V------------~~G~~l~~i 67 (72)
T 1z6h_A 45 GIVKEVKKKEGDFV------------NEGDVLLEL 67 (72)
T ss_dssp EEEEEESSCTTCEE------------CTTCEEEEE
T ss_pred cEEEEEecCCCCEE------------CCCCEEEEE
Done!