Query 010597
Match_columns 506
No_of_seqs 110 out of 127
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 10:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010597.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010597hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b78a1 b.122.1.9 (A:1-68) Hyp 37.3 4.8 0.00035 30.8 0.9 22 41-62 33-54 (68)
2 d1xsqa_ b.82.1.14 (A:) Ureidog 34.1 21 0.0016 30.1 4.8 56 38-95 14-74 (160)
3 d1snoa_ b.40.1.1 (A:) Staphylo 21.8 28 0.0021 27.3 3.1 43 2-44 35-84 (136)
4 d1k28a1 b.40.8.1 (A:6-129) Tai 19.2 17 0.0013 30.0 1.2 15 28-42 5-19 (124)
5 d1a8pa1 b.43.4.2 (A:2-100) Fer 19.2 35 0.0025 26.0 3.0 36 48-87 42-77 (99)
6 d2as0a1 b.122.1.9 (A:1-72) Hyp 15.2 27 0.002 25.4 1.3 19 40-58 35-53 (72)
7 d2bdra1 b.82.1.14 (A:1-166) Ur 15.1 65 0.0047 27.1 4.1 50 38-87 15-70 (166)
8 d1twia1 b.49.2.3 (A:15-49,A:31 13.2 45 0.0033 28.3 2.4 40 50-97 11-50 (170)
9 d1jmca1 b.40.4.3 (A:183-298) R 12.4 81 0.0059 24.4 3.7 45 46-93 8-57 (116)
10 d1h3ga1 b.1.18.2 (A:3-95) Cycl 11.6 24 0.0017 27.8 0.0 6 28-33 12-17 (93)
No 1
>d2b78a1 b.122.1.9 (A:1-68) Hypothetical protein SMu776, N-terminal domain {Streptococcus mutans [TaxId: 1309]}
Probab=37.26 E-value=4.8 Score=30.81 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=20.8
Q ss_pred cceEEecCCCceeeeccCChhh
Q 010597 41 GRLIQIKPGVGRFVARNYSPRQ 62 (506)
Q Consensus 41 GrIIrIsp~~GRyVAkSYspRQ 62 (506)
|-||++.-+.|+|+|++|--+|
T Consensus 33 g~~v~l~~~~~~flg~gY~gkQ 54 (68)
T d2b78a1 33 NQVVQLYSDADIFLGTAYLSKQ 54 (68)
T ss_dssp SEEEEEECTTCCEEEEEEEEEE
T ss_pred CCEEEEEcCCCcEEEEEEEecc
Confidence 8999999999999999998887
No 2
>d1xsqa_ b.82.1.14 (A:) Ureidoglycolate hydrolase AllA {Shigella flexneri [TaxId: 623]}
Probab=34.12 E-value=21 Score=30.11 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=36.6
Q ss_pred CCccceEEecCCCceeeeccCChh-----hhcccCCCCceEEEEEEeeCCCCeeeEEEEEEec
Q 010597 38 DPFGRLIQIKPGVGRFVARNYSPR-----QLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQA 95 (506)
Q Consensus 38 DP~GrIIrIsp~~GRyVAkSYspR-----QL~ta~~G~PlFEIf~~kd~~~~Y~~QaV~Lk~~ 95 (506)
=|||.+|..+..-.+-+-++|.-| ++.....|.|.+-||-++-...-+..+ .|.|-
T Consensus 14 apfG~vI~~~~~~~~~in~G~~~~~~~~a~~~~~~~g~~~~~i~~~~~~~~p~~i~--~lErH 74 (160)
T d1xsqa_ 14 SAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQPANLPLTIH--ELERH 74 (160)
T ss_dssp TTTEEEECCTTCCCEEC----CEEEEEEEEECBSSCSCEEEEEEEECBCCSSCEEE--EEEEC
T ss_pred CccceEEecCCCCceeccCccceEEcchhhcccccCCCceEeEeeeccccccccee--eeecC
Confidence 499999998887776666666643 455667788999999886555555544 35544
No 3
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]}
Probab=21.83 E-value=28 Score=27.31 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=26.9
Q ss_pred Ccccchhhh-------hhhHHHHHHhhcccceeeeeeecCCCCCCccceE
Q 010597 2 DLPELDLKM-------KLSLMLIIIVFMSWKVGWWVGYSKDSDDPFGRLI 44 (506)
Q Consensus 2 ~~~~~~~~~-------~~~~~~~r~~ag~gLVGWW~G~s~d~~DP~GrII 44 (506)
|-||+.-+- .-+..|+++....|-.-+..-......|+|||++
T Consensus 35 daPE~~~~~~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~~D~~gR~l 84 (136)
T d1snoa_ 35 DTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGL 84 (136)
T ss_dssp ECCCSSBTTTBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCSBCTTSCEE
T ss_pred cccccccCCcchhhhHHHHHHHHHHHhhcCceeEEEEeccccCCccccce
Confidence 567765332 3466799988765444344444456679999875
No 4
>d1k28a1 b.40.8.1 (A:6-129) Tail-associated lysozyme gp5, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=19.20 E-value=17 Score=30.02 Aligned_cols=15 Identities=40% Similarity=0.875 Sum_probs=13.6
Q ss_pred eeeeecCCCCCCccc
Q 010597 28 WWVGYSKDSDDPFGR 42 (506)
Q Consensus 28 WW~G~s~d~~DP~Gr 42 (506)
||.|.=+|.+||.+.
T Consensus 5 WwiG~Ved~~Dp~~~ 19 (124)
T d1k28a1 5 WFVGVVEDRMDPLKL 19 (124)
T ss_dssp EEEEEEEECCCSSCS
T ss_pred EEEEEEccCCCCccC
Confidence 999999999999754
No 5
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}
Probab=19.18 E-value=35 Score=25.98 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=27.5
Q ss_pred CCCceeeeccCChhhhcccCCCCceEEEEEEeeCCCCeee
Q 010597 48 PGVGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVM 87 (506)
Q Consensus 48 p~~GRyVAkSYspRQL~ta~~G~PlFEIf~~kd~~~~Y~~ 87 (506)
|..|..+.|+||+ +++|.-+-+|+++.+-.+|.+..
T Consensus 42 ~~~g~~~~R~ySi----~S~p~~~~~~~~i~~~~~G~~S~ 77 (99)
T d1a8pa1 42 EVDGRPLMRAYSI----ASPNYEEHLEFFSIKVQNGPLTS 77 (99)
T ss_dssp EETTEEEEEEEEC----CSCTTSSEEEEEEECCSSCSSHH
T ss_pred cCCCceeEeeccc----cCCCCCCcEEEEEEEeCCCChhH
Confidence 3568889999994 45677889999988766776654
No 6
>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.16 E-value=27 Score=25.43 Aligned_cols=19 Identities=16% Similarity=0.592 Sum_probs=17.6
Q ss_pred ccceEEecCCCceeeeccC
Q 010597 40 FGRLIQIKPGVGRFVARNY 58 (506)
Q Consensus 40 ~GrIIrIsp~~GRyVAkSY 58 (506)
=|-+|+|.-..|||+||+|
T Consensus 35 ~Gd~V~v~d~~g~~lg~G~ 53 (72)
T d2as0a1 35 PGDIVEVYTRGGKFLGKGF 53 (72)
T ss_dssp TTCEEEEEETTCCEEEEEE
T ss_pred CCcEEEEEeCCCcEEEEEE
Confidence 3889999999999999998
No 7
>d2bdra1 b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA {Pseudomonas putida [TaxId: 303]}
Probab=15.14 E-value=65 Score=27.13 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=36.0
Q ss_pred CCccceEEecCCCceeeeccCChhh--hcc----cCCCCceEEEEEEeeCCCCeee
Q 010597 38 DPFGRLIQIKPGVGRFVARNYSPRQ--LVT----ASPGTPLFEIFVVKDNEESYVM 87 (506)
Q Consensus 38 DP~GrIIrIsp~~GRyVAkSYspRQ--L~t----a~~G~PlFEIf~~kd~~~~Y~~ 87 (506)
=|||.+|..+...++.+-.+|+-|. |++ ...|.|++=||-.+....-+..
T Consensus 15 apfG~vi~~~~~~~~~iN~G~~~r~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~i 70 (166)
T d2bdra1 15 AQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRADAQDMPLTV 70 (166)
T ss_dssp TTTEEEECSTTCCCEEEGGGTEEEEEEEEEECBSSTTCEEEEEEEEEECCCSSEEE
T ss_pred cccccEEecCCCCceeecCcccEEecccccccccCCCCcEEEEEEEeccccCccce
Confidence 3999999999888888888887664 222 2458899988877654444443
No 8
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.21 E-value=45 Score=28.25 Aligned_cols=40 Identities=30% Similarity=0.445 Sum_probs=32.8
Q ss_pred CceeeeccCChhhhcccCCCCceEEEEEEeeCCCCeeeEEEEEEecCC
Q 010597 50 VGRFVARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLKQAKG 97 (506)
Q Consensus 50 ~GRyVAkSYspRQL~ta~~G~PlFEIf~~kd~~~~Y~~QaV~Lk~~~~ 97 (506)
-|||+--+|+..+|++. .|.+|.. -|.|..+|+++|...+
T Consensus 11 ~~r~~~~~~~~~~~~~~-~g~~~~~-------~G~lvtrV~~vK~~~~ 50 (170)
T d1twia1 11 DGRFFIDGYDAIELAEK-FGTPLYV-------MGYLLGKVHHIKETPV 50 (170)
T ss_dssp TTEEEETTEEHHHHHHH-HCSSEEE-------EEEEEEEEEEEEECSS
T ss_pred eeeEEecCCCceEEEee-CCceEee-------eEEEEEEEEEEEecCC
Confidence 48888889999999997 5678754 2899999999998753
No 9
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.42 E-value=81 Score=24.43 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=29.9
Q ss_pred ecCCCcee-----eeccCChhhhcccCCCCceEEEEEEeeCCCCeeeEEEEEE
Q 010597 46 IKPGVGRF-----VARNYSPRQLVTASPGTPLFEIFVVKDNEESYVMQVVHLK 93 (506)
Q Consensus 46 Isp~~GRy-----VAkSYspRQL~ta~~G~PlFEIf~~kd~~~~Y~~QaV~Lk 93 (506)
++|+..++ |.+-+..|+..++.-=..+|++-|+ |+.| .++|+.-.
T Consensus 8 L~p~~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~-De~G--~I~~t~~~ 57 (116)
T d1jmca1 8 LTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV-DESG--EIRATAFN 57 (116)
T ss_dssp CCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE-CSSC--EEEEEEEH
T ss_pred cCCCCCCEEEEEEEEEeccceEEECCCCCceEEEEEEE-cCCC--CEEEEEch
Confidence 44555544 6677788887654322368999987 8888 58876654
No 10
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=11.57 E-value=24 Score=27.83 Aligned_cols=6 Identities=50% Similarity=1.946 Sum_probs=5.0
Q ss_pred eeeeec
Q 010597 28 WWVGYS 33 (506)
Q Consensus 28 WW~G~s 33 (506)
||+||.
T Consensus 12 WW~GM~ 17 (93)
T d1h3ga1 12 WWAGMQ 17 (93)
T ss_dssp EETTCS
T ss_pred hHcCCC
Confidence 999984
Done!