Your job contains 1 sequence.
>010598
MALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPP
PNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPL
PGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQ
NSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSS
LPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQL
MQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTV
APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQLHSQV
LPAQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLPPVAAGS
VNNPTRFQQGLQAAQDWMWKNKPSGT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010598
(506 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 154 8.6e-30 4
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 154 8.6e-30 4
TAIR|locus:2065190 - symbol:AT2G47310 species:3702 "Arabi... 143 5.4e-16 2
UNIPROTKB|H0YG38 - symbol:PRPF40A "Pre-mRNA-processing fa... 132 6.0e-07 2
UNIPROTKB|C9JVK6 - symbol:WAC "WW domain-containing adapt... 124 1.1e-06 1
UNIPROTKB|F5H578 - symbol:PRPF40A "Pre-mRNA-processing fa... 132 1.5e-06 2
MGI|MGI:1860512 - symbol:Prpf40a "PRP40 pre-mRNA processi... 131 4.6e-06 2
RGD|1311401 - symbol:Prpf40a "PRP40 pre-mRNA processing f... 131 4.6e-06 2
UNIPROTKB|C9JD58 - symbol:WAC "WW domain-containing adapt... 124 9.4e-06 1
UNIPROTKB|O75400 - symbol:PRPF40A "Pre-mRNA-processing fa... 132 1.2e-05 2
UNIPROTKB|G3MZC7 - symbol:PRPF40A "Uncharacterized protei... 132 1.2e-05 2
UNIPROTKB|J3QTA0 - symbol:WAC "WW domain-containing adapt... 124 1.7e-05 1
UNIPROTKB|F1RQH2 - symbol:PRPF40A "Uncharacterized protei... 128 3.2e-05 2
UNIPROTKB|J3QT76 - symbol:WAC "WW domain-containing adapt... 124 4.8e-05 1
UNIPROTKB|F1MGS0 - symbol:WAC "Uncharacterized protein" s... 124 0.00013 1
UNIPROTKB|F1SE54 - symbol:WAC "Uncharacterized protein" s... 124 0.00013 1
MGI|MGI:2387357 - symbol:Wac "WW domain containing adapto... 124 0.00013 1
UNIPROTKB|Q9BTA9 - symbol:WAC "WW domain-containing adapt... 124 0.00013 1
GENEDB_PFALCIPARUM|MAL8P1.40 - symbol:MAL8P1.40 "RNA-bind... 116 0.00013 2
UNIPROTKB|Q8IB66 - symbol:MAL8P1.40 "RNA binding protein,... 116 0.00013 2
MGI|MGI:109568 - symbol:Wbp4 "WW domain binding protein 4... 119 0.00020 1
ZFIN|ZDB-GENE-030131-2624 - symbol:waca "WW domain contai... 121 0.00022 1
ZFIN|ZDB-GENE-050522-342 - symbol:zgc:112384 "zgc:112384"... 119 0.00024 1
UNIPROTKB|F1NQH4 - symbol:PRPF40A "Uncharacterized protei... 123 0.00031 1
MGI|MGI:1925583 - symbol:Prpf40b "PRP40 pre-mRNA processi... 121 0.00040 1
UNIPROTKB|Q6NWY9 - symbol:PRPF40B "Pre-mRNA-processing fa... 121 0.00040 1
TAIR|locus:2091171 - symbol:PRP40B "pre-mRNA-processing p... 122 0.00041 2
RGD|620033 - symbol:Wbp4 "WW domain binding protein 4" sp... 116 0.00043 1
UNIPROTKB|Q5U4Q0 - symbol:wac "WW domain-containing adapt... 118 0.00057 1
TAIR|locus:2194894 - symbol:PRP40A "pre-mRNA-processing p... 115 0.00069 2
UNIPROTKB|F1PCW3 - symbol:WBP4 "Uncharacterized protein" ... 114 0.00072 1
ZFIN|ZDB-GENE-041010-46 - symbol:wacb "WW domain containi... 115 0.00088 1
CGD|CAL0003333 - symbol:orf19.3250 species:5476 "Candida ... 116 0.00089 1
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 154 (59.3 bits), Expect = 8.6e-30, Sum P(4) = 8.6e-30
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 345 VSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 399
+ ++I ++ P +WTEHTSP+G+KYYYN +T SKW+KPEE L+E
Sbjct: 593 IPSNINTIPQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYE 647
Score = 147 (56.8 bits), Expect = 8.6e-30, Sum P(4) = 8.6e-30
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36
ALAA++AL+G Y MRGC+QPL +RFADPKRPRPG+
Sbjct: 266 ALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGE 300
Score = 97 (39.2 bits), Expect = 8.6e-30, Sum P(4) = 8.6e-30
Identities = 52/180 (28%), Positives = 69/180 (38%)
Query: 71 IPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGG--PADVPLPGLAVSST 128
+P ++WHP SPR+ N G N + P+ + + P G S T
Sbjct: 336 MPPDSWHPSSPRSAPHQFNNF--GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQT 393
Query: 129 ----SSALQQNFCQPESQAPSLG-QQISPLQKXXXXXXXXXXXXXXXXXXSSYSHTQNSH 183
SS + N P +Q LG QQI PLQK
Sbjct: 394 AVPSSSHMGMN-PPPMAQGHHLGGQQIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQ- 451
Query: 184 LRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPG 243
+ QLQ+P S Q+ L SG LP SQP QQ AS S A+ P + ++PG
Sbjct: 452 IGQLQVP--QSMGPGSFGQNRL--SGQLPVSQPLMQQNASVS-AVQVPSAVSNSMQAIPG 506
Score = 87 (35.7 bits), Expect = 8.6e-30, Sum P(4) = 8.6e-30
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 462 QHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKN 501
Q QEL YTQL G+++ P+R QQG+Q+AQ+ WK+
Sbjct: 702 QMKQQELNYTQLQ--TPGAID-PSRIQQGIQSAQERAWKS 738
Score = 69 (29.3 bits), Expect = 7.8e-22, Sum P(4) = 7.8e-22
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 5 AINALNGIYTMRGCDQPLTVRFADPKRPRPG 35
AI AL+ YT+ G P+ VR+AD +R R G
Sbjct: 179 AIRALHNQYTLPGAMGPIQVRYADGERERHG 209
Score = 47 (21.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 178 HTQNSHLRQLQIPGQTSFSQAL-PSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKP 236
H Q ++QLQ P Q A+ P Q + Q + Q++ + T L TP I P
Sbjct: 664 HQQKLAMQQLQSPPQAQTHPAMQPVQQIPQAQQGQQQMQMKQQEL--NYTQLQTPGAIDP 721
Score = 41 (19.5 bits), Expect = 4.5e-24, Sum P(4) = 4.5e-24
Identities = 47/182 (25%), Positives = 65/182 (35%)
Query: 71 IPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP--LNPGGPADVPLPG-LAVSS 127
+PQN P+ +N L P ++G Q+ G L +P + PG L G L VS
Sbjct: 428 LPQN--FPVQLQN-NQLGQP-LQGPAQQI----GQLQVPQSMGPGSFGQNRLSGQLPVSQ 479
Query: 128 TSSALQQNFCQPESQAPSL---GQQISPLQKXXXXXXXXXXXXXXXXXXSSYSHTQNSHL 184
+QQN Q PS Q P Q+ S + L
Sbjct: 480 P--LMQQNASVSAVQVPSAVSNSMQAIPGQQHLPSNVAPQMLQQPVQQMPSQAPQL---L 534
Query: 185 RQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGG 244
Q Q Q+S+ + Q + + L Q Q Q S+ P +P SS PG
Sbjct: 535 LQQQAALQSSYQSS--QQAIYQLQQQLQLMQQQQQ----SNLNHQQPTQGQPVQSSNPGA 588
Query: 245 TN 246
N
Sbjct: 589 PN 590
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 462 QHNAQELGYTQLPP-VAAGSVNNPTRFQQGLQAAQDWMWKN 501
Q AQ++G Q+P + GS R L +Q M +N
Sbjct: 446 QGPAQQIGQLQVPQSMGPGSFGQ-NRLSGQLPVSQPLMQQN 485
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 154 (59.3 bits), Expect = 8.6e-30, Sum P(4) = 8.6e-30
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 345 VSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 399
+ ++I ++ P +WTEHTSP+G+KYYYN +T SKW+KPEE L+E
Sbjct: 593 IPSNINTIPQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYE 647
Score = 147 (56.8 bits), Expect = 8.6e-30, Sum P(4) = 8.6e-30
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36
ALAA++AL+G Y MRGC+QPL +RFADPKRPRPG+
Sbjct: 266 ALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGE 300
Score = 97 (39.2 bits), Expect = 8.6e-30, Sum P(4) = 8.6e-30
Identities = 52/180 (28%), Positives = 69/180 (38%)
Query: 71 IPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGG--PADVPLPGLAVSST 128
+P ++WHP SPR+ N G N + P+ + + P G S T
Sbjct: 336 MPPDSWHPSSPRSAPHQFNNF--GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQT 393
Query: 129 ----SSALQQNFCQPESQAPSLG-QQISPLQKXXXXXXXXXXXXXXXXXXSSYSHTQNSH 183
SS + N P +Q LG QQI PLQK
Sbjct: 394 AVPSSSHMGMN-PPPMAQGHHLGGQQIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQ- 451
Query: 184 LRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPG 243
+ QLQ+P S Q+ L SG LP SQP QQ AS S A+ P + ++PG
Sbjct: 452 IGQLQVP--QSMGPGSFGQNRL--SGQLPVSQPLMQQNASVS-AVQVPSAVSNSMQAIPG 506
Score = 87 (35.7 bits), Expect = 8.6e-30, Sum P(4) = 8.6e-30
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 462 QHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKN 501
Q QEL YTQL G+++ P+R QQG+Q+AQ+ WK+
Sbjct: 702 QMKQQELNYTQLQ--TPGAID-PSRIQQGIQSAQERAWKS 738
Score = 69 (29.3 bits), Expect = 7.8e-22, Sum P(4) = 7.8e-22
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 5 AINALNGIYTMRGCDQPLTVRFADPKRPRPG 35
AI AL+ YT+ G P+ VR+AD +R R G
Sbjct: 179 AIRALHNQYTLPGAMGPIQVRYADGERERHG 209
Score = 47 (21.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 178 HTQNSHLRQLQIPGQTSFSQAL-PSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKP 236
H Q ++QLQ P Q A+ P Q + Q + Q++ + T L TP I P
Sbjct: 664 HQQKLAMQQLQSPPQAQTHPAMQPVQQIPQAQQGQQQMQMKQQEL--NYTQLQTPGAIDP 721
Score = 41 (19.5 bits), Expect = 4.5e-24, Sum P(4) = 4.5e-24
Identities = 47/182 (25%), Positives = 65/182 (35%)
Query: 71 IPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP--LNPGGPADVPLPG-LAVSS 127
+PQN P+ +N L P ++G Q+ G L +P + PG L G L VS
Sbjct: 428 LPQN--FPVQLQN-NQLGQP-LQGPAQQI----GQLQVPQSMGPGSFGQNRLSGQLPVSQ 479
Query: 128 TSSALQQNFCQPESQAPSL---GQQISPLQKXXXXXXXXXXXXXXXXXXSSYSHTQNSHL 184
+QQN Q PS Q P Q+ S + L
Sbjct: 480 P--LMQQNASVSAVQVPSAVSNSMQAIPGQQHLPSNVAPQMLQQPVQQMPSQAPQL---L 534
Query: 185 RQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGG 244
Q Q Q+S+ + Q + + L Q Q Q S+ P +P SS PG
Sbjct: 535 LQQQAALQSSYQSS--QQAIYQLQQQLQLMQQQQQ----SNLNHQQPTQGQPVQSSNPGA 588
Query: 245 TN 246
N
Sbjct: 589 PN 590
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 462 QHNAQELGYTQLPP-VAAGSVNNPTRFQQGLQAAQDWMWKN 501
Q AQ++G Q+P + GS R L +Q M +N
Sbjct: 446 QGPAQQIGQLQVPQSMGPGSFGQ-NRLSGQLPVSQPLMQQN 485
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 143 (55.4 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 27/36 (75%), Positives = 32/36 (88%)
Query: 1 MALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36
MALAAI ALNG++T+RG DQPL VRFADPK+PR G+
Sbjct: 259 MALAAIKALNGLFTIRGSDQPLIVRFADPKKPRLGE 294
Score = 129 (50.5 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 358 QTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 399
Q ++ W+EHT P+G KYY++C+T S WEKP+E +++E
Sbjct: 398 QNTVSSECDWSEHTCPNGNKYYFHCITCESTWEKPDEYSMYE 439
Score = 56 (24.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 4 AAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35
AAI AL +T G P+ VRFA+ +R R G
Sbjct: 166 AAIAALTEQFTFPGEMLPVKVRFAEAERERIG 197
>UNIPROTKB|H0YG38 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
Ensembl:ENST00000493468 Bgee:H0YG38 Uniprot:H0YG38
Length = 346
Score = 132 (51.5 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 355 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
V++ T + AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 127 VAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 167
Score = 48 (22.0 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 77 HP---MSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP-GGPADVPLPGLAVSSTSSAL 132
HP +P M P+ G R N P G + + P GGP +PG+ +SS +
Sbjct: 51 HPGMHYAPMGMHPM---GQRA--NMPPVPHGMMPQMMPPMGGPPMGQMPGM-MSSVMPGM 104
Query: 133 QQNFCQPESQAPSL 146
+ S P+L
Sbjct: 105 MMSHMSQASMQPAL 118
>UNIPROTKB|C9JVK6 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0005681
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234
HGNC:HGNC:17327 ChiTaRS:WAC HOGENOM:HOG000169503 IPI:IPI00925490
ProteinModelPortal:C9JVK6 SMR:C9JVK6 STRING:C9JVK6
Ensembl:ENST00000442148 ArrayExpress:C9JVK6 Bgee:C9JVK6
Uniprot:C9JVK6
Length = 173
Score = 124 (48.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 346 STSIGPAAPVSSQTVAPAKSS--WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S S P+ S + AP S+ W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 67 SHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 117
>UNIPROTKB|F5H578 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
IPI:IPI01018842 ProteinModelPortal:F5H578 SMR:F5H578 PRIDE:F5H578
Ensembl:ENST00000545856 UCSC:uc002tyj.2 ArrayExpress:F5H578
Bgee:F5H578 Uniprot:F5H578
Length = 448
Score = 132 (51.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 355 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
V++ T + AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 134 VAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 174
Score = 48 (22.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 77 HP---MSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP-GGPADVPLPGLAVSSTSSAL 132
HP +P M P+ G R N P G + + P GGP +PG+ +SS +
Sbjct: 58 HPGMHYAPMGMHPM---GQRA--NMPPVPHGMMPQMMPPMGGPPMGQMPGM-MSSVMPGM 111
Query: 133 QQNFCQPESQAPSL 146
+ S P+L
Sbjct: 112 MMSHMSQASMQPAL 125
>MGI|MGI:1860512 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog
A (yeast)" species:10090 "Mus musculus" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=ISO] [GO:0008360 "regulation
of cell shape" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=ISO;IDA]
[GO:0016477 "cell migration" evidence=ISO] [GO:0032465 "regulation
of cytokinesis" evidence=ISO] [GO:0070064 "proline-rich region
binding" evidence=IDA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 MGI:MGI:1860512
GO:GO:0007010 GO:GO:0016477 GO:GO:0008380 GO:GO:0008360
GO:GO:0016607 GO:GO:0006397 GO:GO:0070064 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 eggNOG:COG5104 CTD:55660 HOVERGEN:HBG059634 EMBL:AF135439
EMBL:AK041205 EMBL:AK051375 EMBL:AK087963 EMBL:U40747
IPI:IPI00284213 IPI:IPI00338887 PIR:S64713 RefSeq:NP_061255.1
UniGene:Mm.257474 UniGene:Mm.392945 UniGene:Mm.393219
ProteinModelPortal:Q9R1C7 SMR:Q9R1C7 IntAct:Q9R1C7 STRING:Q9R1C7
PhosphoSite:Q9R1C7 PaxDb:Q9R1C7 PRIDE:Q9R1C7 DNASU:56194
Ensembl:ENSMUST00000076313 GeneID:56194 KEGG:mmu:56194
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 InParanoid:Q9R1C7
OMA:QETVADF OrthoDB:EOG418BN6 NextBio:312006 Bgee:Q9R1C7
Genevestigator:Q9R1C7 GermOnline:ENSMUSG00000061136 Uniprot:Q9R1C7
Length = 953
Score = 131 (51.2 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 30/55 (54%), Positives = 34/55 (61%)
Query: 348 SIGPAAP--VSSQTVAP-----AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
S+ PA P V+S VA AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 120 SMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 174
Score = 53 (23.7 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 77 HP---MSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP-GGPADVPLPGLAVSSTSSAL 132
HP +P M P+ G R N P G + + P GGP +PG+ +SS S +
Sbjct: 58 HPGMHYAPMGMHPM---GQRA--NMPPVPHGMMPQMMPPMGGPPMGQMPGM-MSSVMSGM 111
Query: 133 QQNFCQPESQAPSL 146
+ S P+L
Sbjct: 112 MMSHMSQASMQPAL 125
>RGD|1311401 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0007010 "cytoskeleton organization"
evidence=IEA;ISO] [GO:0008360 "regulation of cell shape"
evidence=IEA;ISO] [GO:0016363 "nuclear matrix" evidence=IEA;ISO]
[GO:0016477 "cell migration" evidence=IEA;ISO] [GO:0032465
"regulation of cytokinesis" evidence=IEA;ISO] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1311401
GO:GO:0007010 GO:GO:0016477 GO:GO:0008360 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987 OrthoDB:EOG418BN6
EMBL:CH473983 IPI:IPI00372759 RefSeq:NP_001099950.1
UniGene:Rn.95204 Ensembl:ENSRNOT00000006549 GeneID:295607
KEGG:rno:295607 UCSC:RGD:1311401 NextBio:639767 Uniprot:D3ZJ92
Length = 953
Score = 131 (51.2 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 30/55 (54%), Positives = 34/55 (61%)
Query: 348 SIGPAAP--VSSQTVAP-----AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
S+ PA P V+S VA AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 120 SMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 174
Score = 53 (23.7 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 77 HP---MSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP-GGPADVPLPGLAVSSTSSAL 132
HP +P M P+ G R N P G + + P GGP +PG+ +SS S +
Sbjct: 58 HPGMHYAPMGMHPM---GQRA--NMPPVPHGMMPQMMPPMGGPPMGQMPGM-MSSVMSGM 111
Query: 133 QQNFCQPESQAPSL 146
+ S P+L
Sbjct: 112 MMSHMSQASMQPAL 125
>UNIPROTKB|C9JD58 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0005681
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234
HGNC:HGNC:17327 ChiTaRS:WAC IPI:IPI00924579
ProteinModelPortal:C9JD58 SMR:C9JD58 STRING:C9JD58
Ensembl:ENST00000420266 HOGENOM:HOG000169503 ArrayExpress:C9JD58
Bgee:C9JD58 Uniprot:C9JD58
Length = 204
Score = 124 (48.7 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 346 STSIGPAAPVSSQTVAPAKSS--WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S S P+ S + AP S+ W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 67 SHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 117
>UNIPROTKB|O75400 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IDA] [GO:0007010 "cytoskeleton
organization" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0032465 "regulation of cytokinesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0007010 GO:GO:0051301 GO:GO:0016477 GO:GO:0008380
GO:GO:0008360 GO:GO:0016607 GO:GO:0006397 GO:GO:0007049
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
UniGene:Hs.643580 PDB:2DYF PDBsum:2DYF GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 KO:K12821 eggNOG:COG5104
EMBL:AK000592 EMBL:AK024810 EMBL:AF049523 EMBL:AF049524
EMBL:AF049528 EMBL:BC011788 EMBL:BC027178 EMBL:U70667 EMBL:AF155096
EMBL:AF151059 IPI:IPI00337385 IPI:IPI00337386 IPI:IPI00337387
IPI:IPI00915929 RefSeq:NP_060362.3 PDB:1UZC PDB:1YWI PDB:1YWJ
PDB:1ZR7 PDB:2CQN PDB:2KZG PDB:2L5F PDB:2L9V PDB:2LKS PDBsum:1UZC
PDBsum:1YWI PDBsum:1YWJ PDBsum:1ZR7 PDBsum:2CQN PDBsum:2KZG
PDBsum:2L5F PDBsum:2L9V PDBsum:2LKS ProteinModelPortal:O75400
SMR:O75400 IntAct:O75400 MINT:MINT-1180299 STRING:O75400
PhosphoSite:O75400 PaxDb:O75400 PRIDE:O75400 DNASU:55660
Ensembl:ENST00000410080 GeneID:55660 KEGG:hsa:55660 UCSC:uc002tyi.2
CTD:55660 GeneCards:GC02M153508 HGNC:HGNC:16463 HPA:HPA038273
MIM:612941 neXtProt:NX_O75400 PharmGKB:PA28195 HOVERGEN:HBG059634
ChiTaRS:PRPF40A EvolutionaryTrace:O75400 GenomeRNAi:55660
NextBio:60391 PMAP-CutDB:O75400 ArrayExpress:O75400 Bgee:O75400
CleanEx:HS_PRPF40A Genevestigator:O75400 GermOnline:ENSG00000196504
Uniprot:O75400
Length = 957
Score = 132 (51.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 355 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
V++ T + AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 134 VAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 174
Score = 48 (22.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 77 HP---MSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP-GGPADVPLPGLAVSSTSSAL 132
HP +P M P+ G R N P G + + P GGP +PG+ +SS +
Sbjct: 58 HPGMHYAPMGMHPM---GQRA--NMPPVPHGMMPQMMPPMGGPPMGQMPGM-MSSVMPGM 111
Query: 133 QQNFCQPESQAPSL 146
+ S P+L
Sbjct: 112 MMSHMSQASMQPAL 125
>UNIPROTKB|G3MZC7 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GeneTree:ENSGT00530000062987 OMA:QETVADF
EMBL:DAAA02004583 Ensembl:ENSBTAT00000063676 Uniprot:G3MZC7
Length = 958
Score = 132 (51.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 355 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
V++ T + AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 134 VAAGTTSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 174
Score = 48 (22.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 77 HP---MSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP-GGPADVPLPGLAVSSTSSAL 132
HP +P M P+ G R N P G + + P GGP +PG+ +SS +
Sbjct: 58 HPGMHYAPMGMHPM---GQRA--NMPPVPHGMMPQMMPPMGGPPMGQMPGM-MSSVMPGM 111
Query: 133 QQNFCQPESQAPSL 146
+ S P+L
Sbjct: 112 MMSHMSQASMQPAL 125
>UNIPROTKB|J3QTA0 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234 HGNC:HGNC:17327
ChiTaRS:WAC ProteinModelPortal:J3QTA0 Ensembl:ENST00000414108
Uniprot:J3QTA0
Length = 233
Score = 124 (48.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 346 STSIGPAAPVSSQTVAPAKSS--WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S S P+ S + AP S+ W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 67 SHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 117
>UNIPROTKB|F1RQH2 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987
OMA:QETVADF EMBL:CU571020 EMBL:CU915608 RefSeq:NP_001231502.1
UniGene:Ssc.6297 Ensembl:ENSSSCT00000017278 GeneID:100157937
KEGG:ssc:100157937 Uniprot:F1RQH2
Length = 957
Score = 128 (50.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 29/55 (52%), Positives = 34/55 (61%)
Query: 348 SIGPAAP--VSSQTVAP-----AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
S+ PA P V++ VA AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 120 SMQPALPPGVNNMDVAAGATSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 174
Score = 48 (22.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 77 HPM---SPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP-GGPADVPLPGLAVSSTSSAL 132
HP +P M P+ G R N P G + + P GGP +PG+ +SS +
Sbjct: 58 HPSMHYAPMGMHPM---GQRA--NMPPVPHGMMPQMMPPMGGPPMGQMPGM-MSSVMPGM 111
Query: 133 QQNFCQPESQAPSL 146
+ S P+L
Sbjct: 112 MMSHMSQASMQPAL 125
Score = 43 (20.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 17/62 (27%), Positives = 22/62 (35%)
Query: 184 LRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKP--QSSSL 241
LR+ G S A H +G N+P P G P+ P SS +
Sbjct: 50 LRRRPSMGHPSMHYAPMGMHPMGQRANMPPV-PHGMMPQMMPPMGGPPMGQMPGMMSSVM 108
Query: 242 PG 243
PG
Sbjct: 109 PG 110
>UNIPROTKB|J3QT76 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234 HGNC:HGNC:17327
ChiTaRS:WAC ProteinModelPortal:J3QT76 Ensembl:ENST00000424454
Uniprot:J3QT76
Length = 347
Score = 124 (48.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 346 STSIGPAAPVSSQTVAPAKSS--WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S S P+ S + AP S+ W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 67 SHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 117
>UNIPROTKB|F1MGS0 [details] [associations]
symbol:WAC "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071894 "histone H2B conserved C-terminal lysine
ubiquitination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0032435 "negative
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0010390 "histone
monoubiquitination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0045893 GO:GO:0003682 GO:GO:0005681
GO:GO:0006974 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0016239
GO:GO:0000075 GO:GO:0032435 GO:GO:0010390 GO:GO:0071894 OMA:HKILTAG
GeneTree:ENSGT00440000037780 EMBL:DAAA02035670 EMBL:DAAA02035671
IPI:IPI00697530 Ensembl:ENSBTAT00000024313 Uniprot:F1MGS0
Length = 646
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 346 STSIGPAAPVSSQTVAPAKSS--WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S S P+ S + AP S+ W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 112 SHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 162
>UNIPROTKB|F1SE54 [details] [associations]
symbol:WAC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071894 "histone H2B conserved C-terminal lysine
ubiquitination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0032435 "negative
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0010390 "histone
monoubiquitination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0045893 GO:GO:0003682 GO:GO:0005681
GO:GO:0006974 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0016239
GO:GO:0000075 GO:GO:0032435 GO:GO:0010390 GO:GO:0071894 OMA:HKILTAG
GeneTree:ENSGT00440000037780 EMBL:CU570822 EMBL:FP339587
RefSeq:XP_003130752.2 Ensembl:ENSSSCT00000012055 GeneID:100517599
KEGG:ssc:100517599 Uniprot:F1SE54
Length = 646
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 346 STSIGPAAPVSSQTVAPAKSS--WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S S P+ S + AP S+ W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 112 SHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 162
>MGI|MGI:2387357 [details] [associations]
symbol:Wac "WW domain containing adaptor with coiled-coil"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0000993 "RNA polymerase II core binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0010390 "histone monoubiquitination"
evidence=ISO] [GO:0016239 "positive regulation of macroautophagy"
evidence=ISO] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0032435 "negative regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0071894 "histone H2B conserved C-terminal lysine
ubiquitination" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 MGI:MGI:2387357
GO:GO:0045893 GO:GO:0016607 GO:GO:0006351 GO:GO:0003682
GO:GO:0005681 GO:GO:0006974 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0016239 GO:GO:0000075 GO:GO:0032435 GO:GO:0010390
GO:GO:0071894 GO:GO:0000993 HSSP:O75400 HOGENOM:HOG000013038
HOVERGEN:HBG057585 OrthoDB:EOG42RD73 CTD:51322 OMA:HKILTAG
ChiTaRS:WAC EMBL:AF320996 EMBL:AK173274 EMBL:AK044675 EMBL:AK087826
EMBL:AK156780 EMBL:BC080851 IPI:IPI00471431 IPI:IPI00622570
IPI:IPI00676215 RefSeq:NP_001139770.1 RefSeq:NP_694725.3
RefSeq:XP_003946059.1 RefSeq:XP_003946060.1 RefSeq:XP_003946061.1
UniGene:Mm.204524 UniGene:Mm.490814 ProteinModelPortal:Q924H7
SMR:Q924H7 STRING:Q924H7 PhosphoSite:Q924H7 PaxDb:Q924H7
PRIDE:Q924H7 Ensembl:ENSMUST00000074919 Ensembl:ENSMUST00000092112
Ensembl:ENSMUST00000167020 GeneID:101056456 GeneID:225131
KEGG:mmu:101056456 KEGG:mmu:225131 UCSC:uc008eab.2 UCSC:uc008eac.2
UCSC:uc008ead.2 eggNOG:NOG290651 GeneTree:ENSGT00440000037780
InParanoid:Q924H7 NextBio:377540 Bgee:Q924H7 CleanEx:MM_WAC
Genevestigator:Q924H7 Uniprot:Q924H7
Length = 646
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 346 STSIGPAAPVSSQTVAPAKSS--WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S S P+ S + AP S+ W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 112 SHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 162
>UNIPROTKB|Q9BTA9 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0000075 "cell cycle checkpoint" evidence=IMP] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0000993 "RNA polymerase II
core binding" evidence=IDA] [GO:0010390 "histone
monoubiquitination" evidence=IMP] [GO:0071894 "histone H2B
conserved C-terminal lysine ubiquitination" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0016239 "positive regulation of macroautophagy"
evidence=IMP] [GO:0005634 "nucleus" evidence=TAS] [GO:0032435
"negative regulation of proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0005634
GO:GO:0045893 GO:GO:0016607 GO:GO:0006351 GO:GO:0003682
GO:GO:0005681 GO:GO:0006974 EMBL:CH471072 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0016239 GO:GO:0000075 GO:GO:0032435
EMBL:AL161936 GO:GO:0010390 GO:GO:0071894 GO:GO:0000993 HSSP:O75400
HOVERGEN:HBG057585 EMBL:AK055852 EMBL:AK223600 EMBL:AK290174
EMBL:AL713727 EMBL:AL358234 EMBL:BC004258 EMBL:BC010356
EMBL:AB058747 IPI:IPI00087375 IPI:IPI00152381 IPI:IPI00256605
IPI:IPI00478665 RefSeq:NP_057712.2 RefSeq:NP_567823.1
UniGene:Hs.435610 ProteinModelPortal:Q9BTA9 SMR:Q9BTA9
IntAct:Q9BTA9 MINT:MINT-2873194 STRING:Q9BTA9 PhosphoSite:Q9BTA9
DMDM:117949358 PaxDb:Q9BTA9 PRIDE:Q9BTA9 DNASU:51322
Ensembl:ENST00000347934 Ensembl:ENST00000354911
Ensembl:ENST00000375646 Ensembl:ENST00000375664
Ensembl:ENST00000428935 Ensembl:ENST00000439676 GeneID:51322
KEGG:hsa:51322 UCSC:uc001iud.3 UCSC:uc001iue.3 CTD:51322
GeneCards:GC10P028861 HGNC:HGNC:17327 HPA:HPA036528
neXtProt:NX_Q9BTA9 PharmGKB:PA134978936 eggNOG:NOG299824
InParanoid:Q9BTA9 OMA:HKILTAG ChiTaRS:WAC GenomeRNAi:51322
NextBio:54714 ArrayExpress:Q9BTA9 Bgee:Q9BTA9 CleanEx:HS_WAC
Genevestigator:Q9BTA9 GermOnline:ENSG00000095787 Uniprot:Q9BTA9
Length = 647
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 346 STSIGPAAPVSSQTVAPAKSS--WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S S P+ S + AP S+ W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 112 SHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 162
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 116 (45.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 364 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 396
K+ W +H + DG+ YYYN VTG S+WEKP+E++
Sbjct: 100 KNVWQKHVTTDGHPYYYNSVTGHSQWEKPKEMS 132
Score = 40 (19.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36
A AI AL+ +PL VRFA K D
Sbjct: 60 AYKAIEALDYKCIFPNSQRPLDVRFASYKYNNSND 94
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 116 (45.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 364 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 396
K+ W +H + DG+ YYYN VTG S+WEKP+E++
Sbjct: 100 KNVWQKHVTTDGHPYYYNSVTGHSQWEKPKEMS 132
Score = 40 (19.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36
A AI AL+ +PL VRFA K D
Sbjct: 60 AYKAIEALDYKCIFPNSQRPLDVRFASYKYNNSND 94
>MGI|MGI:109568 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 EMBL:AF071184 MGI:MGI:109568 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 EMBL:CH466535 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0045292 CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962
HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
EMBL:AK019160 EMBL:AK135215 EMBL:AK160559 EMBL:AK162009
EMBL:BC034851 IPI:IPI00117019 PIR:S64714 RefSeq:NP_061235.2
UniGene:Mm.476813 ProteinModelPortal:Q61048 SMR:Q61048
STRING:Q61048 PhosphoSite:Q61048 PaxDb:Q61048 PRIDE:Q61048
Ensembl:ENSMUST00000022601 GeneID:22380 KEGG:mmu:22380
GeneTree:ENSGT00390000013956 InParanoid:Q3TUU8 ChiTaRS:WBP4
NextBio:302741 Bgee:Q61048 CleanEx:MM_WBP4 Genevestigator:Q61048
GermOnline:ENSMUSG00000022023 Uniprot:Q61048
Length = 376
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
AK+ W E S DGY YYYN TG SKWEKPE+
Sbjct: 166 AKAVWVEGLSEDGYTYYYNTETGESKWEKPED 197
>ZFIN|ZDB-GENE-030131-2624 [details] [associations]
symbol:waca "WW domain containing adaptor with
coiled-coil a" species:7955 "Danio rerio" [GO:0000993 "RNA
polymerase II core binding" evidence=ISS] [GO:0006974 "response to
DNA damage stimulus" evidence=ISS] [GO:0010390 "histone
monoubiquitination" evidence=ISS] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS] [GO:0071894 "histone
H2B conserved C-terminal lysine ubiquitination" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 ZFIN:ZDB-GENE-030131-2624
GO:GO:0005634 GO:GO:0045893 GO:GO:0006351 GO:GO:0003682
GO:GO:0006974 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000075
GO:GO:0010390 GO:GO:0071894 GO:GO:0000993 HSSP:Q61051 EMBL:AY576994
EMBL:BC048888 IPI:IPI00638645 RefSeq:NP_955954.1 UniGene:Dr.78333
ProteinModelPortal:Q7ZUK7 PRIDE:Q7ZUK7 GeneID:323904
KEGG:dre:323904 CTD:323904 eggNOG:NOG248337 HOGENOM:HOG000013038
HOVERGEN:HBG057585 InParanoid:Q7ZUK7 OrthoDB:EOG42RD73
NextBio:20808481 ArrayExpress:Q7ZUK7 Uniprot:Q7ZUK7
Length = 558
Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 356 SSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
SS T W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 115 SSDTPFEPADDWSEHISSSGKKYYYNCRTEVSQWEKPKE 153
>ZFIN|ZDB-GENE-050522-342 [details] [associations]
symbol:zgc:112384 "zgc:112384" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR001202 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451 SMART:SM00456
ZFIN:ZDB-GENE-050522-342 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 HOVERGEN:HBG053152
KO:K13220 EMBL:BC095798 IPI:IPI00483634 RefSeq:NP_001018530.1
UniGene:Dr.78282 ProteinModelPortal:Q501Z8 GeneID:553723
KEGG:dre:553723 InParanoid:Q501Z8 NextBio:20880452 Uniprot:Q501Z8
Length = 412
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 396
S+W E SPDG+ YYYN +G S WEKPEEL+
Sbjct: 176 SAWMEAVSPDGFTYYYNTESGESSWEKPEELS 207
>UNIPROTKB|F1NQH4 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0016477 "cell
migration" evidence=IEA] [GO:0032465 "regulation of cytokinesis"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0007010 GO:GO:0016477
GO:GO:0008360 GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0032465 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 OMA:SHERPSQ
GeneTree:ENSGT00530000062987 EMBL:AADN02017035 EMBL:AADN02017036
IPI:IPI00822687 Ensembl:ENSGALT00000037747 ArrayExpress:F1NQH4
Uniprot:F1NQH4
Length = 1076
Score = 123 (48.4 bits), Expect = 0.00031, P = 0.00031
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 357 SQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
S+ + KS+WTEH SPDG YYYN T S WEKP++L
Sbjct: 298 SEEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDL 336
>MGI|MGI:1925583 [details] [associations]
symbol:Prpf40b "PRP40 pre-mRNA processing factor 40 homolog
B (yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 MGI:MGI:1925583 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 HOVERGEN:HBG059634
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 CTD:25766
ChiTaRS:PRPF40B EMBL:AF135440 EMBL:AK019183 EMBL:AK140075
EMBL:BC051961 EMBL:BC082994 IPI:IPI00377927 IPI:IPI00875105
IPI:IPI00876460 RefSeq:NP_061256.1 UniGene:Mm.358668
ProteinModelPortal:Q80W14 SMR:Q80W14 STRING:Q80W14
PhosphoSite:Q80W14 PaxDb:Q80W14 PRIDE:Q80W14
Ensembl:ENSMUST00000145482 GeneID:54614 KEGG:mmu:54614
UCSC:uc007xpg.1 UCSC:uc007xph.1 NextBio:311428 Bgee:Q80W14
Genevestigator:Q80W14 Uniprot:Q80W14
Length = 870
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 343 LPVSTSIGPAAPVSSQTVA---PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
+PV+ + P A +S VA P ++ W+EH +PDG YYYN S WEKP L
Sbjct: 71 VPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVL 126
>UNIPROTKB|Q6NWY9 [details] [associations]
symbol:PRPF40B "Pre-mRNA-processing factor 40 homolog B"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 EMBL:CH471111 Gene3D:2.20.70.10
SUPFAM:SSF51045 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 HSSP:O75400 KO:K12821 eggNOG:COG5104
HOVERGEN:HBG059634 EMBL:AK027117 EMBL:AK123353 EMBL:AL137459
EMBL:AL834216 EMBL:BC050398 EMBL:BC067364 EMBL:AF049525
IPI:IPI00446681 IPI:IPI00465345 IPI:IPI00646529 IPI:IPI00789604
PIR:T46402 RefSeq:NP_001026868.2 UniGene:Hs.706827
ProteinModelPortal:Q6NWY9 SMR:Q6NWY9 STRING:Q6NWY9
PhosphoSite:Q6NWY9 DMDM:74736936 PaxDb:Q6NWY9 PRIDE:Q6NWY9
Ensembl:ENST00000261897 Ensembl:ENST00000380281 GeneID:25766
KEGG:hsa:25766 UCSC:uc001rup.1 UCSC:uc001ruq.1 UCSC:uc001rur.1
CTD:25766 GeneCards:GC12P049963 HGNC:HGNC:25031 HPA:HPA038426
HPA:HPA038599 neXtProt:NX_Q6NWY9 PharmGKB:PA143485582
InParanoid:Q6NWY9 OMA:QQLEEGP ChiTaRS:PRPF40B GenomeRNAi:25766
NextBio:46887 ArrayExpress:Q6NWY9 Bgee:Q6NWY9 CleanEx:HS_PRPF40B
Genevestigator:Q6NWY9 Uniprot:Q6NWY9
Length = 871
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 343 LPVSTSIGPAAPVSSQTVA---PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
+PV+ + P A +S VA P ++ W+EH +PDG YYYN S WEKP L
Sbjct: 71 VPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVL 126
>TAIR|locus:2091171 [details] [associations]
symbol:PRP40B "pre-mRNA-processing protein 40B"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008380 "RNA splicing" evidence=IPI]
[GO:0070063 "RNA polymerase binding" evidence=IPI]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AP000417 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 IPI:IPI00525827
IPI:IPI01020219 PIR:T52396 RefSeq:NP_188601.4 UniGene:At.27544
HSSP:O75400 ProteinModelPortal:F4JCC1 SMR:F4JCC1 PRIDE:F4JCC1
EnsemblPlants:AT3G19670.1 GeneID:821504 KEGG:ath:AT3G19670
TAIR:At3g19670 KO:K12821 OMA:SHERPSQ InterPro:IPR027237
PANTHER:PTHR11864:SF0 Uniprot:F4JCC1
Length = 992
Score = 122 (48.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 354 PVSSQTV---APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTL 397
PV T+ A A++ W EH+SPDG KYYYN +T S W PEE+ +
Sbjct: 234 PVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKI 280
Score = 44 (20.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 108 MPLNPGGPADVPLPGLAVSSTSSALQQNFCQ-PESQAPSLG 147
+PL P P + P ++++S +S L Q + Q P+ P G
Sbjct: 100 VPLGP--PTLISQPNVSIASGTS-LHQPYVQTPDIGMPGFG 137
Score = 43 (20.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 176 YSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQP--QGQQIASSSTALPTPLN 233
+SH + S L Q+Q+ L SQ + ++ QP Q I P L
Sbjct: 84 HSHERPSQLNQVQVQHVPLGPPTLISQPNVSIASGTSLHQPYVQTPDIGMPGFGGPRALF 143
Query: 234 IKPQSSSLPG 243
P ++S G
Sbjct: 144 SYPSATSYEG 153
>RGD|620033 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO;ISS] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 RGD:620033 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 CTD:11193 eggNOG:NOG125287
HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:BC089052
IPI:IPI00554046 RefSeq:NP_446218.1 UniGene:Rn.144631
ProteinModelPortal:Q5HZF2 SMR:Q5HZF2 STRING:Q5HZF2
Ensembl:ENSRNOT00000015605 GeneID:114765 KEGG:rno:114765
UCSC:RGD:620033 InParanoid:Q5HZF2 NextBio:618853
Genevestigator:Q5HZF2 GermOnline:ENSRNOG00000011678 Uniprot:Q5HZF2
Length = 374
Score = 116 (45.9 bits), Expect = 0.00043, P = 0.00043
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
AK+ W E S DGY YYYN TG SKWEKP++
Sbjct: 164 AKAIWVEGLSEDGYTYYYNTETGESKWEKPDD 195
>UNIPROTKB|Q5U4Q0 [details] [associations]
symbol:wac "WW domain-containing adapter protein with
coiled-coil" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0000993 "RNA
polymerase II core binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0010390 "histone monoubiquitination"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0071894 "histone H2B conserved
C-terminal lysine ubiquitination" evidence=ISS] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 GO:GO:0045893 GO:GO:0006351 GO:GO:0003682
GO:GO:0006974 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000075
GO:GO:0010390 GO:GO:0071894 GO:GO:0000993 HOGENOM:HOG000013038
HOVERGEN:HBG057585 OrthoDB:EOG42RD73 CTD:51322 eggNOG:NOG290651
EMBL:BC084997 RefSeq:NP_001011171.1 UniGene:Str.2721
ProteinModelPortal:Q5U4Q0 STRING:Q5U4Q0 GeneID:496589
KEGG:xtr:496589 Xenbase:XB-GENE-6258902 InParanoid:Q5U4Q0
Uniprot:Q5U4Q0
Length = 628
Score = 118 (46.6 bits), Expect = 0.00057, P = 0.00057
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 356 SSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
S PA W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 119 SDSAYDPA-DDWSEHISSSGKKYYYNCRTEVSQWEKPKE 156
>TAIR|locus:2194894 [details] [associations]
symbol:PRP40A "pre-mRNA-processing protein 40A"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0008380 "RNA
splicing" evidence=IPI] [GO:0070063 "RNA polymerase binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AC007915 GO:GO:0016592 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
EMBL:AC020576 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
EMBL:AK316856 IPI:IPI00526992 IPI:IPI00548835 IPI:IPI00892236
IPI:IPI00900521 RefSeq:NP_001117438.1 RefSeq:NP_175113.2
UniGene:At.14888 UniGene:At.28268 HSSP:Q61051
ProteinModelPortal:B6EUA9 SMR:B6EUA9 PRIDE:B6EUA9
EnsemblPlants:AT1G44910.1 GeneID:841057 KEGG:ath:AT1G44910
TAIR:At1g44910 eggNOG:COG5104 OMA:WEKPLEL PhylomeDB:B6EUA9
ProtClustDB:CLSN2681520 Genevestigator:B6EUA9 Uniprot:B6EUA9
Length = 958
Score = 115 (45.5 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 28/57 (49%), Positives = 32/57 (56%)
Query: 344 PVSTSIGPAAPVSSQT----VAPAKSS-WTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
PV + G PV+ T + P +S W EHTS DG KYYYN T S WEKP EL
Sbjct: 163 PVQQT-GQQTPVAVSTDPGNLTPQSASDWQEHTSADGRKYYYNKRTKQSNWEKPLEL 218
Score = 49 (22.3 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 109 PLNPGGPADVPLPGLAVS----STSSALQQNFCQPESQAPSL 146
P+ PG P + AVS T+ L QP+ AP +
Sbjct: 61 PVRPGQPVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPM 102
>UNIPROTKB|F1PCW3 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 CTD:11193 KO:K13220
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:AAEX03013176
RefSeq:XP_534136.2 Ensembl:ENSCAFT00000007742 GeneID:476935
KEGG:cfa:476935 Uniprot:F1PCW3
Length = 371
Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
AK+ W E S DGY YYYN TG S+WEKP++
Sbjct: 162 AKTVWVEGVSEDGYTYYYNTETGESRWEKPDD 193
>ZFIN|ZDB-GENE-041010-46 [details] [associations]
symbol:wacb "WW domain containing adaptor with
coiled-coil b" species:7955 "Danio rerio" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 ZFIN:ZDB-GENE-041010-46
Gene3D:2.20.70.10 SUPFAM:SSF51045 GeneTree:ENSGT00440000037780
EMBL:CABZ01063632 EMBL:CABZ01063633 IPI:IPI00972503
Ensembl:ENSDART00000012531 ArrayExpress:F1QVC5 Bgee:F1QVC5
Uniprot:F1QVC5
Length = 494
Score = 115 (45.5 bits), Expect = 0.00088, P = 0.00088
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
W+EH S G KYYYNC T VS+WEKP+E
Sbjct: 8 WSEHISSSGKKYYYNCRTEVSQWEKPKE 35
>CGD|CAL0003333 [details] [associations]
symbol:orf19.3250 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 CGD:CAL0003333 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:AACQ01000049 EMBL:AACQ01000048 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0 eggNOG:COG5104
RefSeq:XP_717875.1 RefSeq:XP_717941.1 ProteinModelPortal:Q5A878
STRING:Q5A878 GeneID:3640384 GeneID:3640462 KEGG:cal:CaO19.10760
KEGG:cal:CaO19.3250 Uniprot:Q5A878
Length = 602
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 354 PVSSQ----TVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
PVS + T + W E+T+ DG KYYYN +TG + WEKP E+
Sbjct: 37 PVSEKQETITTSTTTGKWEEYTTDDGKKYYYNAITGETTWEKPNEI 82
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 506 336 0.00092 116 3 11 23 0.48 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 616 (65 KB)
Total size of DFA: 241 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.51u 0.09s 29.60t Elapsed: 00:00:02
Total cpu time: 29.51u 0.09s 29.60t Elapsed: 00:00:02
Start: Fri May 10 19:18:32 2013 End: Fri May 10 19:18:34 2013