BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010598
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11
Length = 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 355 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
V++ T + AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 4 VAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 44
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 399
+K W E+ S G YYYN T S+W KP+EL E
Sbjct: 53 SKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDLE 89
>pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide
Apptppplpp
pdb|1YWJ|A Chain A, Structure Of The Fbp11ww1 Domain
Length = 41
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 359 TVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
+V AKS WTEH SPDG YYYN T S WEKP++
Sbjct: 6 SVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21
Length = 75
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 362 PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 393
P+K W E + +GY YYY+ ++G S+WEKPE
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPE 33
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 364 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
K+ W E S DG+ YYYN TG S+WEKP++
Sbjct: 45 KTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75
>pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus
pdb|2JUP|W Chain W, Fbp28ww2 Domain In Complex With The Pplipppp Peptide
pdb|2RLY|W Chain W, Fbp28ww2 Domain In Complex With Ptppplpp Peptide
pdb|2RM0|W Chain W, Fbp28ww2 Domain In Complex With A Ppplipppp Peptide
Length = 37
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 361 APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
A A S WTE+ + DG YYYN T S WEKP+EL
Sbjct: 2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36
>pdb|1ZR7|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11
pdb|2DYF|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11 HYPA
(Fbp11 Ww1) Complexed With A Pl (Pplp) Motif Peptide
Ligand
Length = 30
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394
SWTEH SPDG YYYN T S WEKP++
Sbjct: 2 SWTEHKSPDGRTYYYNTETKQSTWEKPDD 30
>pdb|2NNT|A Chain A, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|B Chain B, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|C Chain C, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|D Chain D, General Structural Motifs Of Amyloid Protofilaments
Length = 40
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 361 APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
A A S WTE+ + DG +YYN T S WEKP+EL
Sbjct: 5 ATAVSEWTEYKTADGKTFYYNNRTLESTWEKPQEL 39
>pdb|2DK1|A Chain A, Solution Structure Of Ww Domain In Ww Domain Binding
Protein 4 (Wbp-4)
Length = 50
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKPE 393
W E + +GY YYY+ ++G S+WEKPE
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKPE 35
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
S W E G YYYN +T S WEKP+EL
Sbjct: 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKEL 32
Score = 28.5 bits (62), Expect = 10.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 346 STSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKP 392
ST P +S + + ++ W + DG YYYN T + W P
Sbjct: 24 STWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIP 70
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKP 392
W + S DG YY+N +T S+WE+P
Sbjct: 11 WEKRMSADGRVYYFNHITNASQWERP 36
>pdb|2YSI|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Transcription Elongation Regulator 1, Transcription
Factor Ca150
Length = 40
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKPE 393
W E+ +PDG YYYN T S W KP+
Sbjct: 12 WVENKTPDGKVYYYNARTRESAWTKPD 38
>pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1 MALAAINALNGIYTMRGCDQPLTVRFAD 28
MA AI A++ TM GC P+ V+FAD
Sbjct: 148 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 175
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1 MALAAINALNGIYTMRGCDQPLTVRFAD 28
MA AI A++ TM GC P+ V+FAD
Sbjct: 160 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 187
>pdb|2DNK|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 4
Rna Binding Protein
Length = 105
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31
A AAINAL+G TM G L V+FAD +
Sbjct: 69 AQAAINALHGSQTMPGASSSLVVKFADTDK 98
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKP 392
W + S +G YY+N +T S+WE+P
Sbjct: 11 WEKRMS-NGRVYYFNHITNASQWERP 35
>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2
Peptide Complex
Length = 50
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 352 AAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKP 392
+PV S + P W E T DG ++ N ++WE P
Sbjct: 1 GSPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41
>pdb|2DNH|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 5
Rna Binding Protein
Length = 105
Score = 28.5 bits (62), Expect = 8.9, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31
A AAI+AL+G TM G L V+FAD +
Sbjct: 69 AQAAIHALHGSQTMPGASSSLVVKFADTDK 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,047,946
Number of Sequences: 62578
Number of extensions: 365208
Number of successful extensions: 810
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 786
Number of HSP's gapped (non-prelim): 25
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)