BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010598
(506 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 236/523 (45%), Positives = 292/523 (55%), Gaps = 62/523 (11%)
Query: 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 61
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 264 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTS 323
Query: 62 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 115
NFGD D N W P + RN+GP SN GIRG G+ PP+ G +P N GGP
Sbjct: 324 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFPPKPGQATLPSNQGGPLGGYGV 383
Query: 116 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 174
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 384 PPLNPLPVPGVSSSATLQQQN--------RAAGQHITPLKKPLHSPQGL-PLPLRPQT-- 432
Query: 175 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 234
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 433 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 474
Query: 235 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 294
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 475 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 532
Query: 295 QQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAP 354
QQQ+Q MQ NQNLPL Q + KQ QWAG A VAS S P + + AAP
Sbjct: 533 QQQVQSMQQPNQNLPLSQNGRAGKQ--QWAGSAIPRVASTTGSTPV------SYVQTAAP 584
Query: 355 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQP-- 412
SQ+V K +WTEHTSPDG+KYYYN +TG SKWEKPEE+ +FE++QQ+Q+ ++P
Sbjct: 585 AVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTI 644
Query: 413 --------PSQLHSQVLPAQHIPQTQQVQLQTQLR-----QQQQQQLQHPFSSSYQAPVV 459
P Q Q + Q+ Q Q + L Q P + Q P+
Sbjct: 645 QQSQTQLQPLQQQPQQVQQQYQGQQLQQPFYSSLYPTPGASHNTQYPSLPVGQNSQFPMS 704
Query: 460 RGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNK 502
NAQ+ T + PV A S+N+ +R QQ Q+ Q+ MWKNK
Sbjct: 705 GIGQNAQDYARTHI-PVGAASMNDISRTQQSRQSPQELMWKNK 746
>sp|Q924H7|WAC_MOUSE WW domain-containing adapter protein with coiled-coil OS=Mus
musculus GN=Wac PE=1 SV=2
Length = 646
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQ 404
W+EH S G KYYYNC T VS+WEKP+E EQ+Q++
Sbjct: 135 WSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKE 172
>sp|Q9BTA9|WAC_HUMAN WW domain-containing adapter protein with coiled-coil OS=Homo
sapiens GN=WAC PE=1 SV=3
Length = 647
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQ 404
W+EH S G KYYYNC T VS+WEKP+E EQ+Q++
Sbjct: 135 WSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKE 172
>sp|Q5U4Q0|WAC_XENTR WW domain-containing adapter protein with coiled-coil OS=Xenopus
tropicalis GN=wac PE=2 SV=1
Length = 628
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQ 404
W+EH S G KYYYNC T VS+WEKP+E EQ+Q++
Sbjct: 129 WSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKE 166
>sp|Q7ZUK7|WAC_DANRE WW domain-containing adapter protein with coiled-coil OS=Danio
rerio GN=waca PE=2 SV=1
Length = 558
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQ 404
W+EH S G KYYYNC T VS+WEKP+E EQ+Q++
Sbjct: 126 WSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKE 163
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B
PE=1 SV=1
Length = 992
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 361 APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ 403
A A++ W EH+SPDG KYYYN +T S W PEE+ + +Q +
Sbjct: 244 ADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAE 286
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL-TLFEQ 400
A + W EHTS DG KY++N T S WEKP EL TLFE+
Sbjct: 205 ALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFER 243
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A
PE=1 SV=2
Length = 957
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 355 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
V++ T + AKS WTEH SPDG YYYN T S WEKP++L
Sbjct: 134 VAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 174
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1
SV=2
Length = 1100
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 361 APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQ 411
A A S WTE+ + DG YYYN T S WEKP+EL E+ ++ K P+++
Sbjct: 431 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKE 481
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
PE=1 SV=1
Length = 958
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 361 APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ 403
A A + W E T+P+G KYYYN VT SKW PE+L L +Q Q
Sbjct: 225 ADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQ 267
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a
PE=1 SV=1
Length = 953
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 367 WTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395
WTEH SPDG YYYN T S WEKP++L
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDL 174
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 399
+K W E+ S G YYYN T S+W KP+EL E
Sbjct: 183 SKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLE 219
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
SV=2
Length = 1098
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 361 APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQ 415
A A S WTE+ + DG YYYN T S WEKP+EL E+ +++ K P+++P +
Sbjct: 429 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEE 483
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 362 PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQ 402
P + W E+ +PDG YYYN T S W KP+ + + +Q +
Sbjct: 132 PTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSE 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,783,696
Number of Sequences: 539616
Number of extensions: 10218441
Number of successful extensions: 97961
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 1907
Number of HSP's that attempted gapping in prelim test: 40841
Number of HSP's gapped (non-prelim): 22403
length of query: 506
length of database: 191,569,459
effective HSP length: 122
effective length of query: 384
effective length of database: 125,736,307
effective search space: 48282741888
effective search space used: 48282741888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)