Query 010598
Match_columns 506
No_of_seqs 134 out of 558
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e0l_A Formin binding protein; 99.3 1E-12 3.5E-17 93.5 3.8 34 363-396 4-37 (37)
2 2ysi_A Transcription elongatio 99.2 4.6E-12 1.6E-16 91.9 4.0 33 363-395 8-40 (40)
3 2dk1_A WW domain-binding prote 99.2 1.2E-11 4.2E-16 94.1 3.5 35 363-397 5-39 (50)
4 2dk7_A Transcription elongatio 99.1 6E-11 2E-15 97.1 4.0 41 363-403 18-61 (73)
5 1ywi_A Formin-binding protein 99.1 3.6E-11 1.2E-15 87.4 2.0 32 363-394 10-41 (41)
6 2jxw_A WW domain-binding prote 98.8 2.4E-09 8.3E-14 85.2 3.1 36 362-397 2-37 (75)
7 2l5f_A PRE-mRNA-processing fac 98.7 1.2E-08 4E-13 84.3 4.4 36 363-398 12-47 (92)
8 2jxw_A WW domain-binding prote 98.6 1.3E-08 4.5E-13 81.0 2.7 32 363-394 44-75 (75)
9 1e0m_A Wwprototype; SH3 protot 98.6 1.9E-08 6.3E-13 70.2 2.9 29 366-394 7-35 (37)
10 2ysh_A GAS-7, growth-arrest-sp 98.6 3.6E-08 1.2E-12 70.2 4.3 29 366-394 11-39 (40)
11 2l5f_A PRE-mRNA-processing fac 98.6 7.1E-09 2.4E-13 85.6 0.4 35 364-398 54-88 (92)
12 1ymz_A CC45; artificial protei 98.5 3E-08 1E-12 71.8 2.8 31 366-396 12-42 (43)
13 2jx8_A Hpcif1, phosphorylated 98.5 4.4E-08 1.5E-12 74.7 2.0 31 365-395 13-44 (52)
14 1e0n_A Hypothetical protein; Y 98.5 5.5E-08 1.9E-12 65.8 2.3 26 366-392 2-27 (27)
15 2jv4_A Peptidyl-prolyl CIS/tra 98.5 1E-07 3.5E-12 73.2 4.0 33 365-397 10-43 (54)
16 1wr3_A Ubiquitin-protein ligas 98.4 8.6E-08 3E-12 66.9 2.9 28 366-393 8-35 (36)
17 1o6w_A PRP40, PRE-mRNA process 98.4 7.3E-08 2.5E-12 75.9 2.2 33 365-397 2-34 (75)
18 1wr7_A NEDD4-2; all-beta, liga 98.4 1.5E-07 5.2E-12 67.8 3.7 30 365-394 11-40 (41)
19 1wr4_A Ubiquitin-protein ligas 98.4 1.5E-07 5.1E-12 65.2 2.8 29 365-393 7-35 (36)
20 2dmv_A Itchy homolog E3 ubiqui 98.4 2.4E-07 8.1E-12 67.4 3.9 29 366-394 11-39 (43)
21 2kyk_A E3 ubiquitin-protein li 98.3 2.7E-07 9.2E-12 65.6 3.2 29 366-394 10-38 (39)
22 2kpz_A E3 ubiquitin-protein li 98.3 4.2E-07 1.5E-11 67.9 3.4 30 365-394 15-44 (49)
23 2ysg_A Syntaxin-binding protei 98.2 5.3E-07 1.8E-11 64.8 2.8 29 365-393 10-38 (40)
24 2ez5_W Dnedd4, E3 ubiquitin-pr 98.2 1.1E-06 3.7E-11 65.2 4.4 30 365-394 13-42 (46)
25 2law_A Yorkie homolog; YAP, SM 98.2 3.9E-07 1.3E-11 64.8 2.0 29 365-393 9-37 (38)
26 1o6w_A PRP40, PRE-mRNA process 98.2 7.9E-07 2.7E-11 70.0 3.0 30 365-394 43-72 (75)
27 2ysc_A Amyloid beta A4 precurs 98.1 1.6E-06 5.4E-11 62.9 3.2 27 366-393 12-38 (39)
28 2l4j_A YES-associated protein 98.1 2.7E-06 9.1E-11 63.2 4.5 30 365-394 14-43 (46)
29 2ho2_A Fe65 protein, amyloid b 98.1 1.8E-06 6.1E-11 62.4 3.4 28 366-394 7-34 (38)
30 1i5h_W Rnedd4, ubiquitin ligas 98.1 1.3E-06 4.6E-11 65.8 2.8 30 365-394 14-43 (50)
31 2ysf_A E3 ubiquitin-protein li 98.1 2.7E-06 9.3E-11 61.2 4.1 30 365-394 10-39 (40)
32 2djy_A SMAD ubiquitination reg 98.1 1.5E-06 5.3E-11 63.4 2.7 30 365-394 10-39 (42)
33 2ysb_A Salvador homolog 1 prot 98.1 1.5E-06 5.2E-11 65.4 2.8 30 365-394 14-43 (49)
34 2zaj_A Membrane-associated gua 98.0 5.8E-06 2E-10 62.4 4.1 30 365-394 16-45 (49)
35 2kxq_A E3 ubiquitin-protein li 97.9 5.4E-06 1.9E-10 68.0 3.6 32 365-396 12-43 (90)
36 2jmf_A E3 ubiquitin-protein li 97.8 8.4E-06 2.9E-10 62.3 2.9 30 365-394 21-50 (53)
37 1tk7_A CG4244-PB; WW domain, n 97.8 9.6E-06 3.3E-10 66.3 3.5 31 365-395 15-45 (88)
38 2yse_A Membrane-associated gua 97.8 1.6E-05 5.4E-10 62.6 3.9 30 365-394 16-45 (60)
39 2dwv_A Salvador homolog 1 prot 97.7 9.5E-06 3.3E-10 61.1 2.1 29 366-394 17-45 (49)
40 2ysd_A Membrane-associated gua 97.7 2.7E-05 9.1E-10 60.4 4.7 32 364-395 16-47 (57)
41 2kxq_A E3 ubiquitin-protein li 97.7 1.2E-05 4E-10 66.1 2.7 31 364-394 57-87 (90)
42 1tk7_A CG4244-PB; WW domain, n 97.7 1E-05 3.4E-10 66.2 2.2 29 365-393 59-87 (88)
43 1wmv_A WWOX, WW domain contain 97.5 4.5E-05 1.5E-09 58.4 3.1 30 365-394 14-43 (54)
44 2e45_A Fe65 protein, amyloid b 97.5 3.1E-05 1E-09 60.8 2.0 28 366-394 23-50 (55)
45 1jmq_A YAP65, 65 kDa YES-assoc 97.4 4.7E-05 1.6E-09 55.6 1.9 30 365-394 11-40 (46)
46 3tc5_A Peptidyl-prolyl CIS-tra 97.2 0.00017 5.8E-09 65.0 3.0 30 365-394 12-42 (166)
47 2dgp_A Bruno-like 4, RNA bindi 96.7 0.0018 6.3E-08 51.0 4.7 36 2-37 68-103 (106)
48 1yw5_A Peptidyl prolyl CIS/tra 96.5 0.002 6.8E-08 57.8 4.7 35 365-399 10-45 (177)
49 2dnh_A Bruno-like 5, RNA bindi 96.3 0.0035 1.2E-07 49.4 4.1 34 2-35 69-102 (105)
50 3l4h_A E3 ubiquitin-protein li 96.0 0.0031 1.1E-07 54.9 2.9 30 365-394 75-104 (109)
51 2cqh_A IGF-II mRNA-binding pro 95.6 0.011 3.7E-07 45.7 4.1 35 2-38 57-91 (93)
52 1x4c_A Splicing factor, argini 94.9 0.029 1E-06 44.9 4.9 38 2-40 63-103 (108)
53 2d9p_A Polyadenylate-binding p 94.3 0.045 1.5E-06 43.0 4.5 34 2-38 68-101 (103)
54 1why_A Hypothetical protein ri 94.2 0.039 1.3E-06 43.0 3.8 31 2-33 66-96 (97)
55 2dnz_A Probable RNA-binding pr 94.1 0.055 1.9E-06 41.6 4.5 33 2-37 60-92 (95)
56 2dhg_A TRNA selenocysteine ass 93.8 0.048 1.6E-06 42.7 3.6 35 2-38 64-98 (104)
57 2dnp_A RNA-binding protein 14; 93.8 0.063 2.1E-06 41.3 4.2 34 2-38 56-89 (90)
58 2cqd_A RNA-binding region cont 93.7 0.074 2.5E-06 42.7 4.6 25 2-30 72-96 (116)
59 1x5t_A Splicing factor 3B subu 93.6 0.072 2.5E-06 41.0 4.3 32 2-36 61-92 (96)
60 2dnm_A SRP46 splicing factor; 93.5 0.074 2.5E-06 41.7 4.4 34 2-38 68-101 (103)
61 1eg3_A Dystrophin; EF-hand lik 93.5 0.032 1.1E-06 54.1 2.5 31 364-394 13-43 (261)
62 1wf1_A RNA-binding protein RAL 93.2 0.068 2.3E-06 42.6 3.8 35 2-39 75-110 (110)
63 2cqb_A Peptidyl-prolyl CIS-tra 93.1 0.1 3.4E-06 40.7 4.5 35 2-39 67-101 (102)
64 2dgu_A Heterogeneous nuclear r 93.0 0.15 5.3E-06 40.1 5.5 35 2-39 58-92 (103)
65 1x4a_A Splicing factor, argini 92.7 0.11 3.7E-06 41.3 4.2 31 2-35 74-104 (109)
66 1x5u_A Splicing factor 3B subu 92.5 0.14 4.6E-06 40.2 4.4 32 2-36 70-101 (105)
67 2dgo_A Cytotoxic granule-assoc 92.4 0.21 7E-06 39.9 5.5 33 2-37 70-102 (115)
68 3olm_A E3 ubiquitin-protein li 92.4 0.056 1.9E-06 55.2 2.7 29 366-394 12-40 (429)
69 2m2b_A RNA-binding protein 10; 92.2 0.094 3.2E-06 43.4 3.4 36 2-39 79-117 (131)
70 2fc8_A NCL protein; structure 91.9 0.14 4.9E-06 39.9 4.0 30 2-34 67-96 (102)
71 1x5s_A Cold-inducible RNA-bind 91.9 0.14 4.9E-06 39.9 3.9 33 2-37 67-99 (102)
72 2cpd_A Apobec-1 stimulating pr 91.8 0.17 5.8E-06 39.5 4.3 31 2-35 64-94 (99)
73 2cqi_A Nucleolysin TIAR; RNA r 91.6 0.18 6.3E-06 39.4 4.2 35 2-39 68-102 (103)
74 1fjc_A Nucleolin RBD2, protein 91.3 0.14 4.9E-06 39.5 3.3 31 2-35 66-96 (96)
75 2fc9_A NCL protein; structure 91.3 0.2 6.8E-06 39.1 4.1 29 2-33 66-94 (101)
76 1x5p_A Negative elongation fac 91.2 0.21 7.1E-06 39.0 4.2 31 2-35 62-92 (97)
77 2cq3_A RNA-binding protein 9; 91.2 0.21 7.2E-06 39.1 4.2 35 2-39 68-102 (103)
78 2dnq_A RNA-binding protein 4B; 91.1 0.23 8E-06 38.0 4.3 31 2-35 55-85 (90)
79 2dgt_A RNA-binding protein 30; 91.1 0.25 8.5E-06 38.0 4.5 31 2-35 57-87 (92)
80 3ex7_B RNA-binding protein 8A; 91.0 0.12 4.2E-06 41.9 2.7 35 2-39 77-111 (126)
81 1wi8_A EIF-4B, eukaryotic tran 90.8 0.26 8.7E-06 38.8 4.4 33 2-38 70-102 (104)
82 2dis_A Unnamed protein product 90.6 0.3 1E-05 38.4 4.6 34 2-37 65-99 (109)
83 2fy1_A RNA-binding motif prote 90.4 0.3 1E-05 39.9 4.6 35 2-39 61-95 (116)
84 2cpj_A Non-POU domain-containi 90.4 0.31 1.1E-05 37.9 4.5 30 2-34 64-93 (99)
85 1h2v_Z 20 kDa nuclear CAP bind 90.2 0.2 6.8E-06 42.3 3.5 35 2-39 94-128 (156)
86 2do0_A HnRNP M, heterogeneous 90.1 0.5 1.7E-05 37.4 5.6 32 2-36 69-100 (114)
87 3sde_A Paraspeckle component 1 90.1 0.16 5.4E-06 46.4 3.0 34 2-35 150-184 (261)
88 2lxi_A RNA-binding protein 10; 90.0 0.24 8.1E-06 38.9 3.5 29 2-32 57-85 (91)
89 4a8x_A RNA-binding protein wit 89.8 0.23 7.9E-06 37.3 3.2 29 2-33 60-88 (88)
90 2cpf_A RNA binding motif prote 89.7 0.3 1E-05 37.8 3.9 31 2-35 63-93 (98)
91 2dgs_A DAZ-associated protein 89.1 0.4 1.4E-05 37.2 4.2 33 2-38 65-97 (99)
92 2cpi_A CCR4-NOT transcription 88.9 0.38 1.3E-05 38.7 4.1 28 2-32 76-103 (111)
93 2cph_A RNA binding motif prote 88.8 0.45 1.6E-05 37.2 4.4 31 2-35 71-102 (107)
94 1x4g_A Nucleolysin TIAR; struc 88.6 0.41 1.4E-05 38.0 4.0 30 2-34 74-103 (109)
95 1whw_A Hypothetical protein ri 88.2 0.56 1.9E-05 36.3 4.5 30 2-34 63-92 (99)
96 2x1f_A MRNA 3'-END-processing 87.8 0.3 1E-05 37.8 2.7 28 2-32 57-84 (96)
97 2hvz_A Splicing factor, argini 87.1 0.77 2.6E-05 35.7 4.7 29 2-33 50-78 (101)
98 2lcw_A RNA-binding protein FUS 86.8 0.12 4.2E-06 41.5 0.0 29 2-33 70-98 (116)
99 2dgv_A HnRNP M, heterogeneous 86.0 0.5 1.7E-05 36.0 3.0 30 2-34 61-90 (92)
100 2cq0_A Eukaryotic translation 86.0 0.65 2.2E-05 36.3 3.7 30 2-34 70-99 (103)
101 3nmr_A Cugbp ELAV-like family 85.3 0.43 1.5E-05 39.2 2.5 37 2-38 60-96 (175)
102 2div_A TRNA selenocysteine ass 85.3 0.67 2.3E-05 35.8 3.5 33 2-35 65-99 (99)
103 1x4h_A RNA-binding protein 28; 85.3 0.97 3.3E-05 35.5 4.4 33 2-37 70-108 (111)
104 4f25_A Polyadenylate-binding p 85.1 0.6 2E-05 37.9 3.2 33 2-37 58-90 (115)
105 2kvi_A Nuclear polyadenylated 84.6 0.48 1.6E-05 36.9 2.4 31 2-35 58-88 (96)
106 2dng_A Eukaryotic translation 84.6 0.85 2.9E-05 35.7 3.8 30 2-35 69-98 (103)
107 1x4d_A Matrin 3; structural ge 84.2 0.59 2E-05 38.6 2.9 35 2-38 65-101 (102)
108 1p1t_A Cleavage stimulation fa 83.4 0.49 1.7E-05 36.8 1.9 30 2-34 63-92 (104)
109 2d9o_A DNAJ (HSP40) homolog, s 83.4 0.99 3.4E-05 37.1 3.9 33 2-39 67-99 (100)
110 1nu4_A U1A RNA binding domain; 83.1 0.66 2.3E-05 35.6 2.6 29 2-33 64-92 (97)
111 2dh8_A DAZ-associated protein 82.8 0.8 2.7E-05 35.9 3.0 33 2-38 71-103 (105)
112 2ad9_A Polypyrimidine tract-bi 82.7 0.73 2.5E-05 39.3 2.9 35 2-38 80-115 (119)
113 3md1_A Nuclear and cytoplasmic 82.4 0.92 3.1E-05 33.7 3.1 27 2-31 56-82 (83)
114 3p5t_L Cleavage and polyadenyl 82.1 0.59 2E-05 36.0 1.9 30 2-34 58-87 (90)
115 2ki2_A SS-DNA binding protein 82.1 0.58 2E-05 35.6 1.9 29 2-33 55-83 (90)
116 2cq1_A PTB-like protein L; RRM 81.5 1 3.5E-05 36.8 3.2 36 2-39 64-100 (101)
117 2dgx_A KIAA0430 protein; RRM d 80.4 1.3 4.3E-05 34.6 3.3 28 2-32 65-92 (96)
118 1sjq_A Polypyrimidine tract-bi 80.2 0.8 2.7E-05 38.5 2.2 35 2-38 65-100 (105)
119 2a3j_A U1 small nuclear ribonu 79.6 0.52 1.8E-05 40.0 0.9 35 2-39 85-119 (127)
120 1u6f_A Tcubp1, RNA-binding pro 78.4 1.7 5.9E-05 35.6 3.7 21 19-39 111-131 (139)
121 3pgw_S U1-70K; protein-RNA com 78.1 2.1 7.3E-05 43.2 5.0 30 2-34 157-186 (437)
122 1sjr_A Polypyrimidine tract-bi 78.0 1.4 4.9E-05 39.9 3.3 29 2-31 97-125 (164)
123 2cq2_A Hypothetical protein LO 77.0 1.1 3.9E-05 38.1 2.3 28 2-29 76-105 (114)
124 3ns6_A Eukaryotic translation 76.3 0.79 2.7E-05 36.2 1.0 28 2-31 67-94 (100)
125 2e5i_A Heterogeneous nuclear r 76.3 1.5 5.2E-05 37.5 2.8 29 2-31 75-103 (124)
126 1wex_A Hypothetical protein (r 75.7 1.6 5.3E-05 35.7 2.7 31 2-34 64-95 (104)
127 3v4m_A Splicing factor U2AF 65 75.4 0.57 1.9E-05 38.3 -0.0 31 2-35 72-102 (105)
128 2e5g_A U6 snRNA-specific termi 75.0 1.3 4.6E-05 34.1 2.0 33 2-38 58-90 (94)
129 2pe8_A Splicing factor 45; RRM 72.5 2 7E-05 35.1 2.6 32 2-36 69-100 (105)
130 3s8s_A Histone-lysine N-methyl 72.2 1.2 4.1E-05 36.4 1.1 29 2-33 61-89 (110)
131 3ucg_A Polyadenylate-binding p 71.5 2.5 8.6E-05 31.7 2.7 28 2-33 61-88 (89)
132 3zzy_A Polypyrimidine tract-bi 70.8 2.3 7.7E-05 37.1 2.6 29 2-31 79-107 (130)
133 3beg_B Splicing factor, argini 70.7 3.3 0.00011 33.5 3.5 37 2-39 64-103 (115)
134 3q2s_C Cleavage and polyadenyl 70.5 1.7 5.7E-05 40.0 1.8 26 2-30 125-150 (229)
135 3lqv_A PRE-mRNA branch site pr 69.5 1.2 4E-05 35.5 0.5 29 2-33 60-88 (115)
136 3pgw_A U1-A; protein-RNA compl 69.4 17 0.00058 32.7 8.2 31 2-35 65-95 (282)
137 2wbr_A GW182, gawky, LD47780P; 69.4 2.5 8.6E-05 35.3 2.5 23 2-27 56-78 (89)
138 1wg1_A KIAA1579 protein, homol 65.2 4.7 0.00016 30.7 3.2 27 2-31 53-79 (88)
139 3tht_A Alkylated DNA repair pr 61.7 4.9 0.00017 40.1 3.3 28 2-29 69-98 (345)
140 2cqg_A TDP-43, TAR DNA-binding 61.5 7.9 0.00027 30.0 3.9 32 2-38 70-101 (103)
141 1x4f_A Matrin 3; structural ge 61.4 5.6 0.00019 33.5 3.2 29 2-32 75-104 (112)
142 1wf0_A TDP-43, TAR DNA-binding 61.1 8.2 0.00028 29.2 3.8 27 7-34 56-82 (88)
143 3tyt_A Heterogeneous nuclear r 60.1 6.8 0.00023 35.1 3.7 27 2-31 55-81 (205)
144 1qm9_A Polypyrimidine tract-bi 59.9 23 0.00079 30.0 6.8 27 2-31 54-80 (198)
145 2cpx_A Hypothetical protein FL 56.5 7.9 0.00027 30.5 3.1 21 18-38 93-113 (115)
146 3s6e_A RNA-binding protein 39; 55.0 6.4 0.00022 33.0 2.5 26 2-30 68-93 (114)
147 1whx_A Hypothetical protein ri 54.6 9.9 0.00034 30.6 3.5 27 2-31 59-85 (111)
148 2diu_A KIAA0430 protein; struc 54.5 7.5 0.00026 33.1 2.8 28 2-32 59-86 (96)
149 2cpe_A RNA-binding protein EWS 51.8 12 0.00042 29.4 3.6 19 19-37 92-110 (113)
150 3md3_A Nuclear and cytoplasmic 50.4 16 0.00054 29.4 4.1 30 2-34 54-83 (166)
151 3smz_A Protein raver-1, ribonu 50.4 8.4 0.00029 34.7 2.6 32 2-36 150-181 (284)
152 1b7f_A Protein (SXL-lethal pro 48.5 14 0.00046 30.1 3.4 28 2-32 58-85 (168)
153 2cpy_A RNA-binding protein 12; 48.4 7.8 0.00027 31.1 1.9 26 2-31 70-95 (114)
154 1fxl_A Paraneoplastic encephal 47.6 10 0.00035 30.5 2.5 28 2-32 57-84 (167)
155 3le4_A Microprocessor complex 46.3 13 0.00044 31.1 2.9 33 363-395 29-61 (79)
156 2adc_A Polypyrimidine tract-bi 45.7 30 0.001 30.6 5.4 27 2-31 85-111 (229)
157 2ghp_A U4/U6 snRNA-associated 45.6 12 0.00041 33.8 2.9 29 2-33 172-200 (292)
158 2yh0_A Splicing factor U2AF 65 45.1 16 0.00053 30.7 3.3 31 2-36 64-94 (198)
159 1fj7_A Nucleolin RBD1, protein 42.4 17 0.00058 28.0 2.9 17 19-35 84-100 (101)
160 1wez_A HnRNP H', FTP-3, hetero 39.8 28 0.00096 27.7 3.9 26 2-31 68-93 (102)
161 3d2w_A TAR DNA-binding protein 39.2 16 0.00054 28.3 2.3 26 7-33 62-87 (89)
162 1fje_B Nucleolin RBD12, protei 37.6 19 0.00064 29.7 2.6 28 2-33 67-94 (175)
163 2dnr_A Synaptojanin-1; RRM dom 36.8 19 0.00064 30.3 2.5 30 1-34 61-90 (91)
164 2e5j_A Methenyltetrahydrofolat 34.3 19 0.00064 27.7 2.0 15 19-33 83-97 (97)
165 1x4b_A Heterogeneous nuclear r 33.8 32 0.0011 27.2 3.4 19 19-37 95-113 (116)
166 2g4b_A Splicing factor U2AF 65 31.1 36 0.0012 27.7 3.3 30 2-35 64-93 (172)
167 1wel_A RNA-binding protein 12; 30.4 16 0.00055 29.6 1.0 25 2-30 80-104 (124)
168 2cpz_A CUG triplet repeat RNA- 30.0 22 0.00076 28.1 1.8 17 19-35 94-110 (115)
169 3sde_A Paraspeckle component 1 28.8 33 0.0011 31.1 2.9 25 2-29 71-95 (261)
170 2do4_A Squamous cell carcinoma 25.8 31 0.0011 26.4 1.9 15 19-33 85-99 (100)
171 2db1_A Heterogeneous nuclear r 24.9 22 0.00074 28.9 0.9 26 2-31 74-99 (118)
172 2lmi_A GRSF-1, G-rich sequence 24.3 18 0.0006 28.7 0.2 26 2-31 68-93 (107)
No 1
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=99.31 E-value=1e-12 Score=93.53 Aligned_cols=34 Identities=56% Similarity=0.904 Sum_probs=31.6
Q ss_pred CCCCceEEeCCCCCcccccCCCCceeccCCccCC
Q 010598 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 396 (506)
Q Consensus 363 ~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeElk 396 (506)
..+.|+|++++||++||||.+|+||+||||++|+
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~k 37 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSSCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCccC
Confidence 4567999999999999999999999999999985
No 2
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=99.23 E-value=4.6e-12 Score=91.86 Aligned_cols=33 Identities=42% Similarity=0.925 Sum_probs=30.7
Q ss_pred CCCCceEEeCCCCCcccccCCCCceeccCCccC
Q 010598 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395 (506)
Q Consensus 363 ~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeEl 395 (506)
..+.|+|++++||+.||||.+|+||+||||++|
T Consensus 8 ~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 8 TEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 455799999999999999999999999999986
No 3
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=99.16 E-value=1.2e-11 Score=94.06 Aligned_cols=35 Identities=40% Similarity=0.998 Sum_probs=32.2
Q ss_pred CCCCceEEeCCCCCcccccCCCCceeccCCccCCH
Q 010598 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTL 397 (506)
Q Consensus 363 ~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeElk~ 397 (506)
.++.|+|++++||++||||++|+||+||||++|+.
T Consensus 5 ~~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~ 39 (50)
T 2dk1_A 5 SSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQG 39 (50)
T ss_dssp CSCCEEECCCSTTCCCEEESSSCCEESSCCTTCCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEeeCChhhhh
Confidence 45689999999999999999999999999999843
No 4
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=6e-11 Score=97.13 Aligned_cols=41 Identities=24% Similarity=0.535 Sum_probs=35.1
Q ss_pred CCCCceEEeCCCCCcccccCCCCceeccCCccCC---HHHHHHH
Q 010598 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT---LFEQQQQ 403 (506)
Q Consensus 363 ~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeElk---~~Erq~q 403 (506)
..+.|.|+++.|||.||||..|++|+||||+||+ ++||...
T Consensus 18 pgt~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~e~dr~l~ 61 (73)
T 2dk7_A 18 PGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQ 61 (73)
T ss_dssp SSSSCEEEEESSSCEEEEETTTTEECSSCCTTTTTCSHHHHHHH
T ss_pred CCCCcEEEECCCCCEEEecCcccceeccCChHhcCHHHHHHHHh
Confidence 3468999999999999999999999999999994 3456554
No 5
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=99.06 E-value=3.6e-11 Score=87.45 Aligned_cols=32 Identities=66% Similarity=1.178 Sum_probs=27.2
Q ss_pred CCCCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 363 ~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..+.|+|++++||+.||||.+|+||+||||++
T Consensus 10 ~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 10 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp --CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 34579999999999999999999999999975
No 6
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.78 E-value=2.4e-09 Score=85.19 Aligned_cols=36 Identities=44% Similarity=1.069 Sum_probs=32.4
Q ss_pred CCCCCceEEeCCCCCcccccCCCCceeccCCccCCH
Q 010598 362 PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTL 397 (506)
Q Consensus 362 ~~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeElk~ 397 (506)
+.+..|+|+++++|++||||..|++|+||+|.+|+.
T Consensus 2 ~~~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~ 37 (75)
T 2jxw_A 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQG 37 (75)
T ss_dssp CCCCCEEEEEETTTEEEEEETTTTEEECSCCSSCSS
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEeecCCCcccc
Confidence 355789999999999999999999999999999743
No 7
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.68 E-value=1.2e-08 Score=84.34 Aligned_cols=36 Identities=61% Similarity=1.038 Sum_probs=32.2
Q ss_pred CCCCceEEeCCCCCcccccCCCCceeccCCccCCHH
Q 010598 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLF 398 (506)
Q Consensus 363 ~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeElk~~ 398 (506)
....|+|+++++|++||||..|++|+||+|.++...
T Consensus 12 lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~ 47 (92)
T 2l5f_A 12 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTP 47 (92)
T ss_dssp TTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCH
T ss_pred CCCCcEEEEcCCCCEEEEECCCCceecccCcccccc
Confidence 345799999999999999999999999999998544
No 8
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=80.96 Aligned_cols=32 Identities=53% Similarity=1.124 Sum_probs=29.7
Q ss_pred CCCCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 363 ~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
....|+++++++||+||||.+|++|+||+|+|
T Consensus 44 ~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 44 VKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 45679999999999999999999999999986
No 9
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.60 E-value=1.9e-08 Score=70.24 Aligned_cols=29 Identities=38% Similarity=0.819 Sum_probs=27.8
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
.|+++++++|+.||||..|++++||+|..
T Consensus 7 gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 7 GWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp TEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 69999999999999999999999999975
No 10
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.59 E-value=3.6e-08 Score=70.23 Aligned_cols=29 Identities=38% Similarity=0.901 Sum_probs=27.6
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
.|+++++++|+.||||..|++++||+|..
T Consensus 11 gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 11 GWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp TCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 69999999999999999999999999974
No 11
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.58 E-value=7.1e-09 Score=85.64 Aligned_cols=35 Identities=46% Similarity=0.838 Sum_probs=31.9
Q ss_pred CCCceEEeCCCCCcccccCCCCceeccCCccCCHH
Q 010598 364 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLF 398 (506)
Q Consensus 364 ~s~WtEh~SpDGr~YYYNt~TkEStWEKPeElk~~ 398 (506)
.+.|+++++.+||+||||..|++|+||+|++|+++
T Consensus 54 ~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~~ 88 (92)
T 2l5f_A 54 KCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDL 88 (92)
T ss_dssp SCSEEEEECTTCCEEEEETTTTEEESCCCHHHHTS
T ss_pred ccceEEEECCCCCEEEEECCCCCeeccCchhHhhh
Confidence 46899999999999999999999999999997554
No 12
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.54 E-value=3e-08 Score=71.77 Aligned_cols=31 Identities=32% Similarity=0.766 Sum_probs=29.1
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCccCC
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 396 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeElk 396 (506)
.|+++++++|+.||||..|++|+||+|.++.
T Consensus 12 gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~~ 42 (43)
T 1ymz_A 12 GWERRTDVEGKVYYFNVRTLTTTWERPTIIL 42 (43)
T ss_dssp SEEEEECTTSCEEEEETTTTEEESSCCCSCC
T ss_pred CCEEEECCCCCEEEEECCCCCCcccCCcccc
Confidence 6999999999999999999999999998753
No 13
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.46 E-value=4.4e-08 Score=74.70 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=28.2
Q ss_pred CCceEEeCC-CCCcccccCCCCceeccCCccC
Q 010598 365 SSWTEHTSP-DGYKYYYNCVTGVSKWEKPEEL 395 (506)
Q Consensus 365 s~WtEh~Sp-DGr~YYYNt~TkEStWEKPeEl 395 (506)
..|+++.++ +|+.||||..||+|+||+|.+.
T Consensus 13 ~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 13 AGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred cCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 369999986 8999999999999999999874
No 14
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.46 E-value=5.5e-08 Score=65.81 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=23.8
Q ss_pred CceEEeCCCCCcccccCCCCceeccCC
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKP 392 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKP 392 (506)
.|+ ....+|+.||||..|+||+||+|
T Consensus 2 gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe-EECCCCCeEEEECCCCCEeccCC
Confidence 588 66779999999999999999998
No 15
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.46 E-value=1e-07 Score=73.16 Aligned_cols=33 Identities=30% Similarity=0.713 Sum_probs=29.6
Q ss_pred CCceEEeCC-CCCcccccCCCCceeccCCccCCH
Q 010598 365 SSWTEHTSP-DGYKYYYNCVTGVSKWEKPEELTL 397 (506)
Q Consensus 365 s~WtEh~Sp-DGr~YYYNt~TkEStWEKPeElk~ 397 (506)
..|+++.+. +|+.||||..||+|+||+|.+...
T Consensus 10 ~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~~~ 43 (54)
T 2jv4_A 10 AGWEVRHSNSKNLPYYFNPATRESRWEPPADTDM 43 (54)
T ss_dssp SSCCEEECSSSSCEEEEETTTTEEESSCCTTSCH
T ss_pred CCcEEEEECCCCCEEEEECCCCcEEecCCCCccH
Confidence 369999987 899999999999999999998643
No 16
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.44 E-value=8.6e-08 Score=66.90 Aligned_cols=28 Identities=29% Similarity=0.722 Sum_probs=27.0
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPE 393 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPe 393 (506)
.|+++.+++|+.||||..|++|+||+|.
T Consensus 8 GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 8 GWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp TEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 6999999999999999999999999995
No 17
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.41 E-value=7.3e-08 Score=75.91 Aligned_cols=33 Identities=48% Similarity=0.876 Sum_probs=30.3
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCccCCH
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTL 397 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeElk~ 397 (506)
..|+|+++++|++||||..|++|+||+|.++..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~ 34 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELIS 34 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHH
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcc
Confidence 369999999999999999999999999998644
No 18
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.41 E-value=1.5e-07 Score=67.83 Aligned_cols=30 Identities=23% Similarity=0.697 Sum_probs=27.9
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++++++|+.||||..|++++||+|..
T Consensus 11 ~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~ 40 (41)
T 1wr7_A 11 PGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40 (41)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred CCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence 379999999999999999999999999963
No 19
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.38 E-value=1.5e-07 Score=65.17 Aligned_cols=29 Identities=31% Similarity=0.745 Sum_probs=27.3
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPE 393 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPe 393 (506)
..|+++++++|+.||||..|++++||+|.
T Consensus 7 ~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 7 SGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 36999999999999999999999999995
No 20
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.4e-07 Score=67.42 Aligned_cols=29 Identities=24% Similarity=0.740 Sum_probs=27.9
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
.|+++++++|+.||||..|++++||+|..
T Consensus 11 GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 11 GWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp TEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 69999999999999999999999999975
No 21
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.32 E-value=2.7e-07 Score=65.65 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=27.5
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
.|+++.+++|+.||||..|++|+||+|..
T Consensus 10 gWe~~~d~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 10 GWERRVDNMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp SCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred CcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 69999999999999999999999999963
No 22
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.27 E-value=4.2e-07 Score=67.92 Aligned_cols=30 Identities=23% Similarity=0.698 Sum_probs=28.5
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++++++|+.||||..|++|+||+|..
T Consensus 15 ~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 15 KGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 479999999999999999999999999986
No 23
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.22 E-value=5.3e-07 Score=64.80 Aligned_cols=29 Identities=38% Similarity=0.783 Sum_probs=27.4
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPE 393 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPe 393 (506)
..|+++++.+|+.||||..|++++||+|.
T Consensus 10 ~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 10 YGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp TTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 36999999999999999999999999996
No 24
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.22 E-value=1.1e-06 Score=65.20 Aligned_cols=30 Identities=17% Similarity=0.694 Sum_probs=28.3
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++++.+|+.||||..|++++||+|..
T Consensus 13 ~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 13 PRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp TTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred cCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 479999999999999999999999999975
No 25
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.21 E-value=3.9e-07 Score=64.84 Aligned_cols=29 Identities=28% Similarity=0.687 Sum_probs=27.4
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPE 393 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPe 393 (506)
..|+++++.+|+.||||..|++|+||+|.
T Consensus 9 ~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 9 DGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp SSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 37999999999999999999999999995
No 26
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.17 E-value=7.9e-07 Score=70.02 Aligned_cols=30 Identities=33% Similarity=0.725 Sum_probs=28.4
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++.+++|++||||..|++|+||+|+.
T Consensus 43 ~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 43 NGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp HTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 479999999999999999999999999986
No 27
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.10 E-value=1.6e-06 Score=62.92 Aligned_cols=27 Identities=26% Similarity=0.933 Sum_probs=25.3
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPE 393 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPe 393 (506)
.|+++++++| .||||..|++++||+|.
T Consensus 12 GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 12 GWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp TEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 6999999999 59999999999999995
No 28
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.10 E-value=2.7e-06 Score=63.18 Aligned_cols=30 Identities=27% Similarity=0.694 Sum_probs=28.1
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|++.++.+|+.||||..|++++||+|..
T Consensus 14 ~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 14 EGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp TTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred cCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 479999999999999999999999999974
No 29
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.10 E-value=1.8e-06 Score=62.40 Aligned_cols=28 Identities=32% Similarity=0.889 Sum_probs=26.4
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
.|+++++.+| .||||..|++++||+|..
T Consensus 7 GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 7 GWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp TEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred CceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 6999999999 999999999999999974
No 30
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.09 E-value=1.3e-06 Score=65.78 Aligned_cols=30 Identities=30% Similarity=0.700 Sum_probs=28.2
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++++.+|+.||||..|++++||+|..
T Consensus 14 ~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 14 PGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred cCcEEEEcCCCCEEEEECCCCCEEeeCCCC
Confidence 369999999999999999999999999975
No 31
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.08 E-value=2.7e-06 Score=61.19 Aligned_cols=30 Identities=17% Similarity=0.462 Sum_probs=27.9
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++++.+|+.||||..|++++||.|..
T Consensus 10 ~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 10 EGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp SSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred cCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 379999999999999999999999999964
No 32
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.07 E-value=1.5e-06 Score=63.37 Aligned_cols=30 Identities=13% Similarity=0.450 Sum_probs=28.1
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++++.+|+.||||..|++++||+|..
T Consensus 10 ~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 10 PGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred cCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 379999999999999999999999999975
No 33
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.07 E-value=1.5e-06 Score=65.42 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=28.4
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++++++|+.||||..|++++||+|..
T Consensus 14 ~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 14 PGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp TTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 379999999999999999999999999986
No 34
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=97.96 E-value=5.8e-06 Score=62.44 Aligned_cols=30 Identities=20% Similarity=0.494 Sum_probs=28.0
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|+++++.+|+.||||..|++++||+|..
T Consensus 16 ~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 16 AGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp TTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred cCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 369999999999999999999999999974
No 35
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.92 E-value=5.4e-06 Score=68.04 Aligned_cols=32 Identities=28% Similarity=0.630 Sum_probs=29.5
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCccCC
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 396 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeElk 396 (506)
..|+++++.+||+||||..||+++||+|.+..
T Consensus 12 ~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~ 43 (90)
T 2kxq_A 12 EGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPR 43 (90)
T ss_dssp SSCEEEEETTTEEEEEETTTTEEESSCSSSCS
T ss_pred CCcEEEECCCCCEEEEECCCCeEeeecccccc
Confidence 36999999999999999999999999998753
No 36
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.82 E-value=8.4e-06 Score=62.35 Aligned_cols=30 Identities=17% Similarity=0.480 Sum_probs=28.3
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|++.++.+|+.||||..|++++||.|..
T Consensus 21 ~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 21 PGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred cCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 479999999999999999999999999975
No 37
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.82 E-value=9.6e-06 Score=66.32 Aligned_cols=31 Identities=23% Similarity=0.625 Sum_probs=29.1
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCccC
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeEl 395 (506)
..|+++++.+||+||||..|++++||+|.+.
T Consensus 15 ~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~ 45 (88)
T 1tk7_A 15 DGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQ 45 (88)
T ss_dssp SSCCEEEETTTEEEEEETTTTEEEEESCCCT
T ss_pred CCcEEEECCCCCEEEEECCCCCeEeeccccc
Confidence 4699999999999999999999999999875
No 38
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=1.6e-05 Score=62.58 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=28.1
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|++..+.+|+.||||..|++++||+|..
T Consensus 16 ~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 16 AGWEKIEDPVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEESSCHHH
T ss_pred CCcEEEECCCCCEEEEeCCCCCeeccCCCc
Confidence 369999999999999999999999999975
No 39
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.75 E-value=9.5e-06 Score=61.09 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=27.6
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
.|++..+++|+.||+|..|++++||+|..
T Consensus 17 GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 17 GWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp TEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 69999999999999999999999999975
No 40
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.75 E-value=2.7e-05 Score=60.43 Aligned_cols=32 Identities=22% Similarity=0.523 Sum_probs=29.3
Q ss_pred CCCceEEeCCCCCcccccCCCCceeccCCccC
Q 010598 364 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395 (506)
Q Consensus 364 ~s~WtEh~SpDGr~YYYNt~TkEStWEKPeEl 395 (506)
-..|++.++.+|+.||||..|++++||.|...
T Consensus 16 P~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 16 PENWEMAYTENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp CSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence 44799999999999999999999999999863
No 41
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.74 E-value=1.2e-05 Score=66.09 Aligned_cols=31 Identities=13% Similarity=0.429 Sum_probs=28.8
Q ss_pred CCCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 364 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 364 ~s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
-..|+++++.+|++||||..|++++||.|..
T Consensus 57 P~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 57 PPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 3579999999999999999999999999975
No 42
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.73 E-value=1e-05 Score=66.23 Aligned_cols=29 Identities=17% Similarity=0.502 Sum_probs=27.5
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPE 393 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPe 393 (506)
..|+++++.+|++||||..|++|+||+|.
T Consensus 59 ~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 59 PGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 47999999999999999999999999995
No 43
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.53 E-value=4.5e-05 Score=58.42 Aligned_cols=30 Identities=13% Similarity=0.464 Sum_probs=28.3
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|++..+.+|+.||||-.|++++||.|..
T Consensus 14 ~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 14 YGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp TTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred cCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 469999999999999999999999999976
No 44
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.51 E-value=3.1e-05 Score=60.75 Aligned_cols=28 Identities=32% Similarity=0.889 Sum_probs=26.6
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
.|+|+.+..| +||||..|+.++||+|..
T Consensus 23 GW~~~~D~sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 23 GWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp TEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred CCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence 7999999999 999999999999999964
No 45
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.42 E-value=4.7e-05 Score=55.64 Aligned_cols=30 Identities=20% Similarity=0.728 Sum_probs=28.1
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|++..+++||.||+|-+|++|+|+.|..
T Consensus 11 ~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 11 AGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp TTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred cCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 379999999999999999999999999976
No 46
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=97.17 E-value=0.00017 Score=65.00 Aligned_cols=30 Identities=37% Similarity=0.890 Sum_probs=26.4
Q ss_pred CCceEEeCC-CCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSP-DGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~Sp-DGr~YYYNt~TkEStWEKPeE 394 (506)
..|++++++ .|+.||||..|++|+||+|..
T Consensus 12 ~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~ 42 (166)
T 3tc5_A 12 PGWEKAMSRSSGRVYYFNHITNASQWERPSG 42 (166)
T ss_dssp TTEEEEECTTTCCEEEEETTTCCEESSCC--
T ss_pred CCceEEEcCCCCCEEEEECCCCCEEecCCCC
Confidence 379999995 999999999999999999976
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.67 E-value=0.0018 Score=51.04 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=31.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ges 37 (506)
|.+||++|||+..+.|+.++|.|+||++++.+....
T Consensus 68 A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~~~~ 103 (106)
T 2dgp_A 68 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSGP 103 (106)
T ss_dssp HHHHHHHHTTTCCCTTCSSCCEEEECCCCSCCCCCC
T ss_pred HHHHHHHhcCCcccCCCCceEEEEECCcccccCCCC
Confidence 689999999999999999999999999988765433
No 48
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=96.55 E-value=0.002 Score=57.83 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=30.9
Q ss_pred CCceEEeCC-CCCcccccCCCCceeccCCccCCHHH
Q 010598 365 SSWTEHTSP-DGYKYYYNCVTGVSKWEKPEELTLFE 399 (506)
Q Consensus 365 s~WtEh~Sp-DGr~YYYNt~TkEStWEKPeElk~~E 399 (506)
..|.+.++. .|+.||||.+|++++|++|..+++.|
T Consensus 10 ~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~vs~~e 45 (177)
T 1yw5_A 10 PNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDKEV 45 (177)
T ss_dssp TTEEEEECSSTTCEEEEETTTCCEESSCCTTCCHHH
T ss_pred chHHHHhcccCCchhhhhHHHhhHhhcCcccCCHHH
Confidence 379999998 79999999999999999998875554
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.28 E-value=0.0035 Score=49.38 Aligned_cols=34 Identities=44% Similarity=0.581 Sum_probs=30.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||+..+.|+.++|.|+||++++.|..
T Consensus 69 A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 69 AQAAIHALHGSQTMPGASSSLVVKFADTDKESGP 102 (105)
T ss_dssp HHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCSC
T ss_pred HHHHHHHHcCCccCCCCCccEEEEECccCcccCC
Confidence 7789999999999999999999999999887753
No 50
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=96.02 E-value=0.0031 Score=54.92 Aligned_cols=30 Identities=13% Similarity=0.415 Sum_probs=28.1
Q ss_pred CCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 365 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 365 s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
..|++..+++|+.||.|-.|+.++|+.|..
T Consensus 75 ~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl 104 (109)
T 3l4h_A 75 RGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104 (109)
T ss_dssp TTEEEEECTTCCEEEEETTTTEEESSCSCC
T ss_pred CCCeEEECCCCCEEEEeCCCCCEeeCCCCc
Confidence 369999999999999999999999999975
No 51
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.61 E-value=0.011 Score=45.69 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=28.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+.|||++.+.| ++|.|+||.+++.|.+..+
T Consensus 57 A~~A~~~l~g~~~~~g--~~l~v~~a~~~~~~~~~~~ 91 (93)
T 2cqh_A 57 AIRAIETLSGKVELHG--KIMEVDYSVSKKLRSSGPS 91 (93)
T ss_dssp HHHHHHHHTTTCEETT--EECEEEECCCCCCCCCSCC
T ss_pred HHHHHHHccCCeeECC--EEEEEEEccCccccCCCCC
Confidence 7789999999777776 8999999999887765443
No 52
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.94 E-value=0.029 Score=44.90 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=31.1
Q ss_pred hHHHHHhhcCceeecC---CCCCeEEEecCCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRG---CDQPLTVRFADPKRPRPGDSRSG 40 (506)
Q Consensus 2 AlaAI~~Lng~~tm~G---c~~PL~VrfAd~k~pr~gesrg~ 40 (506)
|.+||+.|||+.. .| ..++|.|++|+++.++.+.+|+.
T Consensus 63 a~~Ai~~l~g~~~-~g~~~~~~~i~V~~a~~~~~~~~rsrsr 103 (108)
T 1x4c_A 63 MTYAVRKLDNTKF-RSHEGETAYIRVKVDGPRSPSYGRSRSS 103 (108)
T ss_dssp HHHHHHHSSSEEE-ECTTSCEEEEEEEESSCCSCCCCCSSCC
T ss_pred HHHHHHHHCcCCc-cCCcCcceEEEEEeCCCCCCCCCCCCCC
Confidence 6789999999764 44 34999999999999888777753
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.34 E-value=0.045 Score=42.96 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=28.2
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+.|||+.. +.++|.|+||.+++.|.....
T Consensus 68 A~~A~~~l~g~~~---~g~~l~V~~a~~~~~~~~~~~ 101 (103)
T 2d9p_A 68 ATKAVTEMNGRIV---ATKPLYVALAQRKEERQSGPS 101 (103)
T ss_dssp HHHHHHHHTTCBS---SSSBCEEEECSSCCCCCCCCC
T ss_pred HHHHHHHhCCCEe---CCcEEEEEEecccccCCCCCC
Confidence 6789999999874 458999999999988776554
No 54
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.15 E-value=0.039 Score=42.98 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=26.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||. .+.|+.++|.|+||.+++++
T Consensus 66 A~~A~~~l~g~-~~~~~g~~l~V~~a~~~~~~ 96 (97)
T 1why_A 66 AQAACAKMRGF-PLGGPDRRLRVDFAKSGPSS 96 (97)
T ss_dssp HHHHHHHHTTC-BCSSSSCBCEEEECCCCCCC
T ss_pred HHHHHHHHCCC-EeCCCCcEEEEEECCCCCCC
Confidence 77899999996 57777899999999998764
No 55
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.13 E-value=0.055 Score=41.61 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=25.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ges 37 (506)
|.+||+.|||.. +.| ++|.|+||.+|+.+.+..
T Consensus 60 a~~A~~~l~g~~-~~g--~~l~V~~a~~~~~~~~~~ 92 (95)
T 2dnz_A 60 ARRALEQLNGFE-LAG--RPMRVGHVTERLDGGSGP 92 (95)
T ss_dssp HHHHHHHHTTCC-SSS--SCCEEEESSCCCCCCCCC
T ss_pred HHHHHHHhCCCe-eCC--cEEEEEEcccccCCCCCC
Confidence 678999999954 444 899999999987765443
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.76 E-value=0.048 Score=42.73 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+.|||..++.| ++|.|++|.+++.+.....
T Consensus 64 a~~A~~~l~g~~~~~g--~~l~v~~a~~~~~~~~~~~ 98 (104)
T 2dhg_A 64 QKRALTECQGAVGLGS--KPVRLSVAIPKASRVKPVE 98 (104)
T ss_dssp HHHHHHHTTTCCSSSS--SCCCCCBCCCCCSCCCCCC
T ss_pred HHHHHHHccCCcccCC--EeEEEEEccCCCcCCCCCC
Confidence 6789999999887776 7899999988877655443
No 57
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.75 E-value=0.063 Score=41.27 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=27.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+.|||.. +. .++|.|+||.+++++.+.+.
T Consensus 56 a~~A~~~l~g~~-~~--g~~l~v~~a~~~~~~~~~~s 89 (90)
T 2dnp_A 56 AKAAIAQLNGKE-VK--GKRINVELSTKGQKKSGPSS 89 (90)
T ss_dssp HHHHHHHHTTCE-ET--TEECEEEESCCCCCCCSCCC
T ss_pred HHHHHHHhCCCE-EC--CcEEEEEECCCCCCCCCCCC
Confidence 678999999965 54 48999999999988877654
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.67 E-value=0.074 Score=42.70 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=21.1
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPK 30 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k 30 (506)
|.+||+.||+ ++.| ++|.|+||.++
T Consensus 72 a~~Ai~~~~~--~~~g--~~l~V~~a~~~ 96 (116)
T 2cqd_A 72 AERACKDPNP--IIDG--RKANVNLAYLG 96 (116)
T ss_dssp HHHHHTCSSC--EETT--EECEEEESTTT
T ss_pred HHHHHHhCCC--cCCC--EEEEEEEcccC
Confidence 6789999998 5766 89999999765
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.56 E-value=0.072 Score=41.00 Aligned_cols=32 Identities=38% Similarity=0.541 Sum_probs=26.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ge 36 (506)
|.+||+.|||... . .++|.|+||++++.+.+.
T Consensus 61 A~~A~~~l~g~~~-~--g~~l~v~~a~~~~~~~~~ 92 (96)
T 1x5t_A 61 SDAAIEAMNGQYL-C--NRPITVSYAFKKDSKGSG 92 (96)
T ss_dssp HHHHHHTTTTCEE-T--TEECEEEESCCCCCCCCC
T ss_pred HHHHHHHcCCCEE-C--CEEEEEEEecccCCCCCC
Confidence 6789999999874 3 589999999998876543
No 60
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.55 E-value=0.074 Score=41.69 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=27.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+.|||.. +.| ++|.|+||.+++++....+
T Consensus 68 A~~A~~~l~g~~-~~g--~~l~V~~a~~~~~~~~~~~ 101 (103)
T 2dnm_A 68 AQDAEAAMDGAE-LDG--RELRVQVARYGRRDLSGPS 101 (103)
T ss_dssp HHHHHHHHSSCC-BTT--BCCEEEECSSCCSCCCCCS
T ss_pred HHHHHHHcCCCE-ECC--cEEEEEECCcCCCCCCCCC
Confidence 778999999966 555 8999999999888766544
No 61
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=93.45 E-value=0.032 Score=54.05 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=28.6
Q ss_pred CCCceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 364 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 364 ~s~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
...|++..+++|++||.|-.|+.++|+-|.-
T Consensus 13 ~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~ 43 (261)
T 1eg3_A 13 QGPWERAISPNKVPYYINHETQTTCWDHPKM 43 (261)
T ss_dssp CTTEEEEECTTSCEEEEETTTTEEESSCHHH
T ss_pred CCCcceeECCCCCeEeecCCcccccCCCCch
Confidence 3479999999999999999999999999983
No 62
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=93.24 E-value=0.068 Score=42.64 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=25.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCC-CCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADP-KRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~-k~pr~gesrg 39 (506)
|.+||+.|||.. +. .++|.|+||.+ +..|.+.+||
T Consensus 75 A~~A~~~l~g~~-~~--g~~l~V~~a~~~~~~~~~~~~G 110 (110)
T 1wf1_A 75 ARAAVLGENGRV-LA--GQTLDINMAGEPKPDRSGPSSG 110 (110)
T ss_dssp HHHHHHHHTTCE-ET--TEECCEEESCCCCSCCCCCCCC
T ss_pred HHHHHHHcCCCE-EC--CeEEEEEECCCCCCCCCCCCCC
Confidence 678999999966 44 58999999984 4455555553
No 63
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.14 E-value=0.1 Score=40.75 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=28.2
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||.. +. .++|.|+||.+++.+.+..+.
T Consensus 67 A~~A~~~l~g~~-~~--g~~l~V~~a~~~~~~~~~~~~ 101 (102)
T 2cqb_A 67 AAAAIDNMNESE-LF--GRTIRVNLAKPMRIKESGPSS 101 (102)
T ss_dssp HHHHHHHHTTEE-ET--TEEEEEEECCCCCCCCCCCCC
T ss_pred HHHHHHHhCCCE-EC--CcEEEEEeCCCCCCCCCCCCC
Confidence 678999999955 44 589999999999888765543
No 64
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=93.04 E-value=0.15 Score=40.11 Aligned_cols=35 Identities=23% Similarity=0.531 Sum_probs=27.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||.. +.| ++|.|+||.+++.+..+.++
T Consensus 58 a~~A~~~l~g~~-~~g--~~l~v~~a~~~~~~~~~~~~ 92 (103)
T 2dgu_A 58 AVKAMEEMNGKD-LEG--ENIEIVFAKPPDQKRKERKA 92 (103)
T ss_dssp HHHHHHHHTTEE-ETT--EEEEEEECCCCCCCCCCCCC
T ss_pred HHHHHHHHCCCc-cCC--CEEEEEEcCCCcccchhhhh
Confidence 678999999985 554 79999999998877655443
No 65
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.72 E-value=0.11 Score=41.28 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=25.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||.. +.| ++|.|+||++++.+..
T Consensus 74 A~~A~~~l~g~~-~~g--~~l~V~~a~~~~~~~~ 104 (109)
T 1x4a_A 74 AEDAVYGRDGYD-YDG--YRLRVEFPRSGRGTGS 104 (109)
T ss_dssp HHHHHHHHTTCE-ETT--EECEEECCCCCCCCCC
T ss_pred HHHHHHHcCCCE-ECC--eEEEEEEcccCCCCCC
Confidence 778999999974 544 7999999999876543
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.46 E-value=0.14 Score=40.20 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=26.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ge 36 (506)
|.+||+.|||.. +.| ++|.|+||++++.+...
T Consensus 70 a~~A~~~l~g~~-~~g--~~l~v~~a~~~~~~~~~ 101 (105)
T 1x5u_A 70 ADYAIKIMDMIK-LYG--KPIRVNKASAHNKNLSG 101 (105)
T ss_dssp HHHHHHHSSSCB-CSS--CBCEEEETTTTSCCCCC
T ss_pred HHHHHHHhCCCe-ECC--eEEEEEECCCCCcCCCC
Confidence 678999999965 555 89999999998876543
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=92.42 E-value=0.21 Score=39.90 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=27.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ges 37 (506)
|.+||+.|||.. +.| ++|.|+||++++++....
T Consensus 70 a~~A~~~l~g~~-~~g--~~l~V~~a~~~~~~~~~~ 102 (115)
T 2dgo_A 70 AENAIQQMGGQW-LGG--RQIRTNWATRKPPAPKST 102 (115)
T ss_dssp HHHHHHHTTTCE-ETT--EECEEEESSCCCCCSCCC
T ss_pred HHHHHHHhCCCE-ECC--EEEEEEEccCCCCCCccc
Confidence 678999999965 665 799999999998876543
No 68
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.056 Score=55.15 Aligned_cols=29 Identities=17% Similarity=0.524 Sum_probs=27.6
Q ss_pred CceEEeCCCCCcccccCCCCceeccCCcc
Q 010598 366 SWTEHTSPDGYKYYYNCVTGVSKWEKPEE 394 (506)
Q Consensus 366 ~WtEh~SpDGr~YYYNt~TkEStWEKPeE 394 (506)
.|++..+++|++||.|-.|+.++|+.|..
T Consensus 12 gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 12 GWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp TCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 69999999999999999999999999975
No 69
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=92.23 E-value=0.094 Score=43.43 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.2
Q ss_pred hHHHHHhhcCc---eeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGI---YTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~---~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||+ +.++| ++|.|+||.+++++.....|
T Consensus 79 a~~Ai~~l~g~~~~~~~~g--r~l~V~~a~~~~~~~~~~~~ 117 (131)
T 2m2b_A 79 AAQLLQILQALHPPLTIDG--KTINVEFAKGSKRDMASNEG 117 (131)
T ss_dssp HHHHHHHHTTCCCSCCGGG--CCCCCEECCCSCCCCCCCCC
T ss_pred HHHHHHHhcCCCCCccCCC--EEEEEEECCCCCCCCCCCCC
Confidence 67899999997 55665 89999999999887665544
No 70
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.94 E-value=0.14 Score=39.86 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=24.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||.. +.| ++|.|+||.+|+.+.
T Consensus 67 A~~A~~~l~g~~-~~g--~~l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 67 AKAAKEAMEDGE-IDG--NKVTLDWAKPKGEGG 96 (102)
T ss_dssp HHHHHHHHTTCE-ETT--EECEEEECCCCCSSS
T ss_pred HHHHHHHhCCCe-ECC--eEEEEEEecCCCCCC
Confidence 778999999964 655 689999999987753
No 71
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.89 E-value=0.14 Score=39.87 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=26.1
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ges 37 (506)
|.+||+.|||.. +.| ++|.|+||+++..+.+..
T Consensus 67 A~~A~~~l~g~~-~~g--~~l~v~~a~~~~~~~~~~ 99 (102)
T 1x5s_A 67 AKDAMMAMNGKS-VDG--RQIRVDQAGKSSDNRSGP 99 (102)
T ss_dssp HHHHHHHHTTCC-TTS--CCCEEEEEECCCCCCCCC
T ss_pred HHHHHHHhCCCE-ECC--eEEEEEECCCCCCCCCCC
Confidence 678999999976 554 889999999887665443
No 72
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.84 E-value=0.17 Score=39.47 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=24.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||.. +. .++|.|+||.+++.+..
T Consensus 64 A~~A~~~l~g~~-~~--g~~l~v~~a~~~~~~~~ 94 (99)
T 2cpd_A 64 AVEAMKALNGKV-LD--GSPIEVTLAKPVDKDSS 94 (99)
T ss_dssp HHHHHHHHSSEE-ET--TEEEEEECCCCCCCCCC
T ss_pred HHHHHHHhCCCE-eC--CcEEEEEECCCCCCCCC
Confidence 778999999985 44 47999999998875443
No 73
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.56 E-value=0.18 Score=39.42 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=27.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||.. +. .++|.|+||.+++.+..+..+
T Consensus 68 a~~A~~~l~g~~-~~--g~~l~V~~a~~~~~~~~~~~~ 102 (103)
T 2cqi_A 68 AAAALAAMNGRK-IL--GKEVKVNWATTPSSQKSGPSS 102 (103)
T ss_dssp HHHHHHHHTTEE-ET--TEEEEEEECCCTTCCCCCCCC
T ss_pred HHHHHHHhCCCC-cC--CCeEEEEECCCCcccccCCCC
Confidence 678999999987 44 489999999998877655443
No 74
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=91.28 E-value=0.14 Score=39.46 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=25.2
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||. .+.| ++|.|+||.+++.+.|
T Consensus 66 a~~A~~~l~g~-~~~g--~~l~v~~a~~~~~~~G 96 (96)
T 1fjc_A 66 AEKNLEEKQGA-EIDG--RSVSLYYTGEKGGTRG 96 (96)
T ss_dssp HHHHHHHTTEE-EETT--EEEEEEECSSSCCCCC
T ss_pred HHHHHHHhCCC-EECC--eEEEEEEcCCCCCCCC
Confidence 67899999994 5655 7899999999887654
No 75
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.26 E-value=0.2 Score=39.08 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=23.4
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||.. +. .++|.|+||++++.+
T Consensus 66 A~~A~~~l~g~~-~~--g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 66 AKEALNSCNKRE-IE--GRAIRLELQGPRGSP 94 (101)
T ss_dssp HHHHHHHTSSEE-ET--TEEEEEEECSSCCCC
T ss_pred HHHHHHHhCCCE-eC--CeEEEEEEcCCCCCC
Confidence 678999999954 44 589999999988654
No 76
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.24 E-value=0.21 Score=38.96 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=25.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||... . .++|.|+||.+++.+..
T Consensus 62 a~~Ai~~l~g~~~-~--g~~l~v~~a~~~~~~~~ 92 (97)
T 1x5p_A 62 ADQAVAELNGTQV-E--SVQLKVNIARKQPMLDS 92 (97)
T ss_dssp HHHHHHHTTTEEE-T--TEEEEEECCSSCCCCCS
T ss_pred HHHHHHHhCCCeE-C--CeEEEEEECCCCCCCCC
Confidence 7789999999854 3 58999999998876554
No 77
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.15 E-value=0.21 Score=39.08 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=28.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||.. +. .++|.|+||.++..+.....+
T Consensus 68 a~~A~~~l~g~~-~~--g~~l~v~~a~~~~~~~~~~~~ 102 (103)
T 2cq3_A 68 ADRAREKLHGTV-VE--GRKIEVNNATARVMTNSGPSS 102 (103)
T ss_dssp HHHHHHHHTTCE-ET--TEECEEEECCSSCCCCCSSCC
T ss_pred HHHHHHHhCCCE-EC--CEEEEEEEcccCCCCCCCCCC
Confidence 678999999987 44 488999999999887766554
No 78
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.12 E-value=0.23 Score=38.02 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=24.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||.. +. .++|.|+||.+++.+..
T Consensus 55 A~~A~~~l~g~~-~~--g~~l~v~~a~~~~~~~~ 85 (90)
T 2dnq_A 55 AEDAIRNLHHYK-LH--GVNINVEASKNKSKASS 85 (90)
T ss_dssp HHHHHHHHTTCB-CS--SCBCEEECSSCCCCCCS
T ss_pred HHHHHHHhcCCc-cC--CcEEEEEECCCCCCCCC
Confidence 678999999954 44 47899999999887654
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.09 E-value=0.25 Score=38.03 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=24.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||.. +. .++|.|+||.+++.+..
T Consensus 57 a~~A~~~l~g~~-~~--g~~l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 57 AVEAIRGLDNTE-FQ--GKRMHVQLSTSRLRTAS 87 (92)
T ss_dssp HHHHHHHHTTEE-ET--TEEEEEEESSCCCSCCC
T ss_pred HHHHHHHhCCCe-eC--CcEEEEEEccCCCCCCC
Confidence 678999999976 44 48999999998866543
No 80
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=90.98 E-value=0.12 Score=41.87 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=26.2
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||... . .++|.|+||.++.++.+..+|
T Consensus 77 a~~A~~~l~g~~~-~--g~~l~v~~a~~~~~~~~~~~~ 111 (126)
T 3ex7_B 77 AQAAMEGLNGQDL-M--GQPISVDWCFVRGPPKGKRRG 111 (126)
T ss_dssp HHHHHHHHTTCBS-S--SSBCEEEESEESSSCCC----
T ss_pred HHHHHHHhCCCee-C--CeEEEEEEecCCCCCCCCCCC
Confidence 6789999999764 4 589999999999888765544
No 81
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.81 E-value=0.26 Score=38.79 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+|| .|||.. +. .++|.|+||++++.+.+..|
T Consensus 70 a~~A~-~l~g~~-~~--g~~l~V~~a~~~~~~~~~~~ 102 (104)
T 1wi8_A 70 LLSAL-SLNEES-LG--NKRIRVDVADQAQDKDSGPS 102 (104)
T ss_dssp HHHHH-GGGTCE-ET--TEECEEEECCCCCCCCCCCC
T ss_pred HHHHH-hcCCCE-eC--CcEEEEEEccCCCCCCCCCC
Confidence 67899 999975 54 48999999999988764433
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.60 E-value=0.3 Score=38.43 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=26.8
Q ss_pred hHHHHHhh-cCceeecCCCCCeEEEecCCCCCCCCCC
Q 010598 2 ALAAINAL-NGIYTMRGCDQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 2 AlaAI~~L-ng~~tm~Gc~~PL~VrfAd~k~pr~ges 37 (506)
|.+||+.| ||.+.+.| ++|.|+||++++...-+.
T Consensus 65 A~~A~~~l~~g~~~~~g--~~l~V~~a~~~~~~~~~~ 99 (109)
T 2dis_A 65 AAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDV 99 (109)
T ss_dssp HHHHHTTTTTCCSCBTT--BCCEEEESCSSCSTTTCC
T ss_pred HHHHHHHhhCCCceecC--CeEEEEEcCCCCCcCHHH
Confidence 67899999 56678877 789999999987654443
No 83
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=90.39 E-value=0.3 Score=39.91 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=27.1
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||.. +.| ++|.|+||+++..+.+..++
T Consensus 61 A~~Ai~~l~g~~-~~g--~~l~V~~a~~~~~~~~~~~~ 95 (116)
T 2fy1_A 61 AKNAAKDMNGKS-LHG--KAIKVEQAKKPSFQSGGRRR 95 (116)
T ss_dssp HHHHHHHCSSCB-CSS--SBCEEEECCCSSCSSSSSCC
T ss_pred HHHHHHHhCCCE-ECC--EEEEEEECCCCCCCCCCCCC
Confidence 678999999976 444 79999999987766555443
No 84
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.36 E-value=0.31 Score=37.94 Aligned_cols=30 Identities=33% Similarity=0.369 Sum_probs=24.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||.. +.| ++|.|+||.+++...
T Consensus 64 a~~a~~~l~g~~-~~g--~~l~v~~a~~~~~~~ 93 (99)
T 2cpj_A 64 AEIAKVELDNMP-LRG--KQLRVRFACHSASLT 93 (99)
T ss_dssp HHHHHHHHTTCC-BTT--BCCEEEESSCCSCCC
T ss_pred HHHHHHHhCCCE-eCC--ceEEEEEcCCCCCCC
Confidence 678999999976 665 899999999877643
No 85
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=90.21 E-value=0.2 Score=42.27 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=26.2
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||... +.++|.|+||.+++++.+..|+
T Consensus 94 A~~Ai~~l~g~~~---~g~~l~V~~a~~~~~~~~~~~~ 128 (156)
T 1h2v_Z 94 AENAMRYINGTRL---DDRIIRTDWDAGFKEGRQYGRG 128 (156)
T ss_dssp HHHHHHHTTTSEE---TTEECEEEEESCCCTTCC----
T ss_pred HHHHHHHhCCCEE---CCeEEEEEECCCCCCcCCCCCC
Confidence 6789999999765 3589999999998887665443
No 86
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.14 E-value=0.5 Score=37.44 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=25.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ge 36 (506)
|.+||+.|||... . .++|.|+||+.+++|...
T Consensus 69 a~~A~~~l~g~~~-~--g~~l~v~~a~~~~~~~~~ 100 (114)
T 2do0_A 69 AVQAISMFNGQLL-F--DRPMHVKMDERALPKGDF 100 (114)
T ss_dssp HHHHHHHHTTCEE-T--TEECEEEECSCCCCCSCC
T ss_pred HHHHHHHhCCCEe-C--CCEEEEEEcccCCCCCCC
Confidence 6789999999764 3 589999999988777543
No 87
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=90.13 E-value=0.16 Score=46.37 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=30.0
Q ss_pred hHHHHHhh-cCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINAL-NGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~L-ng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.| ||.|.+.++.+||+|++++.+..+.+
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~~~ 184 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDG 184 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCEESSSC
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeeccccCccCC
Confidence 78899999 88999999999999999998866544
No 88
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=90.01 E-value=0.24 Score=38.90 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=24.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRP 32 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~p 32 (506)
|.+||+++++.+.++| ++|.|+||++|..
T Consensus 57 A~~Ai~~~~~~~~~~g--r~i~V~~a~~~~~ 85 (91)
T 2lxi_A 57 ATRWMEANQHSLNILG--QKVSMHYSDPKPK 85 (91)
T ss_dssp HHHHHHTTTTEEEETT--EEEEEECCCSCCC
T ss_pred HHHHHHhcCCCeEECC--EEEEEEEcCCCCC
Confidence 6789999988888887 7999999998653
No 89
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=89.80 E-value=0.23 Score=37.29 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=24.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||.. +. .++|.|++|.+++||
T Consensus 60 a~~A~~~l~g~~-~~--g~~l~v~~a~~~~~R 88 (88)
T 4a8x_A 60 AEKALKHMDGGQ-ID--GQEITATAVLAPWPR 88 (88)
T ss_dssp HHHHHHHHTTCE-ET--TEECEEEEECCCCCC
T ss_pred HHHHHHHcCCCe-EC--CeEEEEEECCCCCCC
Confidence 678999999976 44 489999999999987
No 90
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.73 E-value=0.3 Score=37.75 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.1
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||.. +.| ++|.|+||++++.+..
T Consensus 63 a~~A~~~l~g~~-~~g--~~l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 63 AQKALKQLQGHT-VDG--HKLEVRISERATKPAS 93 (98)
T ss_dssp HHHHHHHSTTCE-ETT--EECEEECSSCSSCCCC
T ss_pred HHHHHHHhCCCe-eCC--eEEEEEEccCCCCCCC
Confidence 678999999975 555 7999999998876543
No 91
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.08 E-value=0.4 Score=37.20 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=25.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+ |||. .+.| ++|.|++|++++.+....+
T Consensus 65 a~~A~~-~~~~-~~~g--~~l~V~~a~~~~~~~~~~~ 97 (99)
T 2dgs_A 65 VDQAVN-MHFH-DIMG--KKVEVKRAEPRDSKSSGPS 97 (99)
T ss_dssp HHHHHH-HCCC-BSSS--CBCEEEECCCCCCCCCCSS
T ss_pred HHHHHH-hCCC-EECC--eEEEEEECCCCcccCCCCC
Confidence 678898 8886 4554 7999999999887765443
No 92
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.93 E-value=0.38 Score=38.66 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRP 32 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~p 32 (506)
|.+||+.|||.. ++| ++|.|+||.+|..
T Consensus 76 A~~Ai~~lng~~-~~g--r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 76 ALRAIQCVNNVV-VDG--RTLKASLGTTKYC 103 (111)
T ss_dssp HHHHHHHHTTEE-ETT--EEEEEESCCCCSC
T ss_pred HHHHHHHhCCCE-ECC--EEEEEEecccccc
Confidence 788999999986 554 7999999998863
No 93
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.85 E-value=0.45 Score=37.18 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=24.6
Q ss_pred hHHHHHhh-cCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINAL-NGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~L-ng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.| ||. .+.| ++|.|+||++++++..
T Consensus 71 a~~A~~~l~~~~-~~~g--~~l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 71 AKKAFNALCHST-HLYG--RRLVLEWADSEVTVQS 102 (107)
T ss_dssp HHHHHHHHHTCC-BSSS--CBCEEEECCCCCCCCC
T ss_pred HHHHHHHhccCC-eECC--CEEEEEeCCCCCCCCC
Confidence 67899999 665 4555 6999999999887653
No 94
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.59 E-value=0.41 Score=38.02 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=24.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||. .+.| ++|.|+||.+++.+.
T Consensus 74 a~~A~~~l~g~-~~~g--~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 74 AAHAIVSVNGT-TIEG--HVVKCYWGKESPDMT 103 (109)
T ss_dssp HHHHHHHHTTC-EETT--EECEEECCCCCCSSC
T ss_pred HHHHHHHcCCC-EECC--cEEEEEecCCCCCCC
Confidence 77899999996 5665 789999999876554
No 95
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.20 E-value=0.56 Score=36.26 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=24.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||.. +. .++|.|++|.+++.+.
T Consensus 63 a~~A~~~l~g~~-~~--g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 63 AVKAYAEVDGQV-FQ--GRMLHVLPSTIKKEAS 92 (99)
T ss_dssp HHHHHHHTTTEE-SS--SCEEEEEECCCCSTTC
T ss_pred HHHHHHHhCCCE-EC--CcEEEEEEcCCCcccc
Confidence 678999999965 44 4899999999988763
No 96
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=87.81 E-value=0.3 Score=37.83 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=23.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRP 32 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~p 32 (506)
|.+||+.|||. .++| ++|.|+||.+++.
T Consensus 57 A~~Ai~~l~g~-~~~g--~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 57 SASAVRNLNGY-QLGS--RFLKCGYSSNSDI 84 (96)
T ss_dssp HHHHHHHHTTC-EETT--EECEEEECSCSSG
T ss_pred HHHHHHHhCCC-eECC--eEEEEEEcCCCCC
Confidence 67899999995 4666 9999999998764
No 97
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=87.06 E-value=0.77 Score=35.71 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||.. +.| ++|.|++|.+++.+
T Consensus 50 a~~A~~~l~g~~-~~g--~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 50 AEDAVRGLDGKV-ICG--SRVRVELSTGMPRR 78 (101)
T ss_dssp HHHHHHHHHHSC-SSS--CCCEEEESSSCCCS
T ss_pred HHHHHHHHCCCe-ECC--cEEEEEEccCCCCc
Confidence 678999999974 655 66999999987744
No 98
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=86.82 E-value=0.12 Score=41.49 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=23.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||.. +.| ++|.|++|.+|..+
T Consensus 70 A~~Ai~~l~g~~-~~g--~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 70 AKAAIDWFDGKE-FSG--NPIKVSFATRRADF 98 (116)
Confidence 678999999954 554 79999999987665
No 99
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=85.96 E-value=0.5 Score=35.96 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=24.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||.. +.| ++|.|+||.+++...
T Consensus 61 a~~a~~~l~g~~-~~g--~~l~v~~a~~~~~~~ 90 (92)
T 2dgv_A 61 AERACRMMNGMK-LSG--REIDVRIDRNASGPS 90 (92)
T ss_dssp HHHHHHHHTTCC-BTT--BCCCCEECSCCSSCC
T ss_pred HHHHHHHhCCCE-ECC--cEEEEEEcCCCCCCC
Confidence 678999999966 555 699999999887654
No 100
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.95 E-value=0.65 Score=36.28 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||.. +.| ++|.|+||.+++.+.
T Consensus 70 A~~A~~~l~g~~-~~g--~~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 70 AARAIAGVSGFG-YDH--LILNVEWAKPSTNSG 99 (103)
T ss_dssp HHHHHHHTTTCE-ETT--EECEEEESSCCCCSC
T ss_pred HHHHHHHcCCCe-eCC--cEEEEEECCCCCCCC
Confidence 778999999976 554 799999999987664
No 101
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=85.30 E-value=0.43 Score=39.19 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=32.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+.|||+..++|+.+++.|++++.++.+..+.+
T Consensus 60 A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (175)
T 3nmr_A 60 ALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 96 (175)
T ss_dssp HHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGS
T ss_pred HHHHHHHhcCcEEccCCccceEEccccccccccCCCC
Confidence 6789999999999999999999999998877654443
No 102
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.29 E-value=0.67 Score=35.82 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=25.4
Q ss_pred hHHHHHhhcCceeecCCC--CCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCD--QPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~--~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||. .+.|+. ++|.|.||.+.++.-|
T Consensus 65 a~~A~~~l~g~-~~~g~~~~~~l~v~~a~~~~~~sG 99 (99)
T 2div_A 65 AEKCLHKINGK-PLPGATPAKRFKLNYATYSGPSSG 99 (99)
T ss_dssp HHHHHHTTTTS-EESSCSSCEECCEEETTCCSSSCC
T ss_pred HHHHHHHHcCC-ccCCCCcceeEEEeecCCCCCCCC
Confidence 67899999994 577765 3399999988876543
No 103
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.27 E-value=0.97 Score=35.51 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.5
Q ss_pred hHHHHHhhc------CceeecCCCCCeEEEecCCCCCCCCCC
Q 010598 2 ALAAINALN------GIYTMRGCDQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 2 AlaAI~~Ln------g~~tm~Gc~~PL~VrfAd~k~pr~ges 37 (506)
|.+||+.|| | +.+.| ++|.|+||.+++.+....
T Consensus 70 A~~A~~~~~~~~~~~~-~~~~g--~~l~v~~a~~~~~~~~~~ 108 (111)
T 1x4h_A 70 AQKCLAAASLEAEGGG-LKLDG--RQLKVDLAVTRDEAASGP 108 (111)
T ss_dssp HHHHHHHHCTTTTTCC-EESSS--CEEEEECCCCCCCCCCCC
T ss_pred HHHHHHHhccccccCC-cEEcC--EEEEEEECCCCccCCCCC
Confidence 678999999 5 44655 799999999987765443
No 104
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=85.08 E-value=0.6 Score=37.85 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=23.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ges 37 (506)
|.+||++|||+. ++| ++|.|++|.+++.|..+.
T Consensus 58 A~~Ai~~l~~~~-~~g--~~i~V~~a~~~~~~~~~~ 90 (115)
T 4f25_A 58 AERAIEKMNGML-LND--RKVFVGRFKSRKEREAEL 90 (115)
T ss_dssp HHHHHHHHTTCE-ETT--EECEEEESSCCCC-----
T ss_pred HHHHHHHcCCCE-ECC--EEEEEEECCCcccccccc
Confidence 678999999975 555 799999999988765543
No 105
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=84.64 E-value=0.48 Score=36.90 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=22.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||... . .++|.|+||.+++.+..
T Consensus 58 A~~A~~~l~g~~~-~--g~~l~V~~a~~~~~~~~ 88 (96)
T 2kvi_A 58 VRDAIECESQEMN-F--GKKLILEVSSSNARPQF 88 (96)
T ss_dssp HHHHHHHHTCSSC-B--TTTBCEEEEECCCC---
T ss_pred HHHHHHHcCCCee-C--CcEEEEEEcCcCCCCCC
Confidence 6789999999754 3 58999999987655443
No 106
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=84.56 E-value=0.85 Score=35.70 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=23.4
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+|| .|||.. +.| ++|.|+||++++.+..
T Consensus 69 a~~A~-~l~g~~-~~g--~~l~V~~a~~~~~~~~ 98 (103)
T 2dng_A 69 LKEAL-TYDGAL-LGD--RSLRVDIAEGRKQDKS 98 (103)
T ss_dssp HHHHG-GGTTCE-ETT--EECEEEECCCCCCCCS
T ss_pred HHHHH-hhCCCe-ECC--eEEEEEEecCCCCCCC
Confidence 67888 899954 444 7999999999877654
No 107
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.21 E-value=0.59 Score=38.59 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=25.6
Q ss_pred hHHHHHhhcCc-eeecCCCCCeEEEecCC-CCCCCCCCC
Q 010598 2 ALAAINALNGI-YTMRGCDQPLTVRFADP-KRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~-~tm~Gc~~PL~VrfAd~-k~pr~gesr 38 (506)
|.+||+.|||. ..++| ++|.|.||.. ++.+.|.|.
T Consensus 65 A~~Ai~~l~~~~~~~~G--r~l~V~~a~~~~~~~~~~~~ 101 (102)
T 1x4d_A 65 AQAAVDYYTTTPALVFG--KPVRVHLSQKYKRIKSGPSS 101 (102)
T ss_dssp HHHHHHHHHHSCCEETT--EECEEEEECCCTTSSCCSCC
T ss_pred HHHHHHHHcCCCceECC--cEEEEEECCCCCCCCCCCCC
Confidence 77899999986 35555 8999999995 445555443
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.39 E-value=0.49 Score=36.80 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=24.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||... . .++|.|+||.+++.+.
T Consensus 63 a~~A~~~l~g~~~-~--g~~l~v~~a~~~~~~~ 92 (104)
T 1p1t_A 63 ALSAMRNLNGREF-S--GRALRVDNAASEKNKE 92 (104)
T ss_dssp HHHHHHHSSSBSC-S--SSCBEEEETTCTTHHH
T ss_pred HHHHHHHhCCCee-C--CcEEEEEeCCCccchh
Confidence 6789999999664 3 5899999999987764
No 109
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.36 E-value=0.99 Score=37.12 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=24.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|..||+.++|. +.+||.|+||.++..+....++
T Consensus 67 A~~Ai~~~~~~-----~g~~l~V~~a~~~~~~~~~~~~ 99 (100)
T 2d9o_A 67 AELAVQNEVGL-----VDNPLKISWLEGQPQDASGPSS 99 (100)
T ss_dssp HHHHHHTCCBC-----SSSBCEEECSSCCCCCCSSCCC
T ss_pred HHHHHHhcCCC-----CCCeEEEEEccCCCCCCCCCCC
Confidence 56778776653 4689999999998877765543
No 110
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=83.14 E-value=0.66 Score=35.61 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=23.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||... . .++|.|+||.+++.+
T Consensus 64 A~~A~~~l~g~~~-~--g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 64 ATNALRSMQGFPF-Y--DKPMRIQYAKTDSDI 92 (97)
T ss_dssp HHHHHHHHTTCEE-T--TEECEEEECSSCCTH
T ss_pred HHHHHHHhCCCEE-C--CcEEEEEEccCCCcc
Confidence 6789999999654 4 589999999988754
No 111
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.78 E-value=0.8 Score=35.86 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=25.2
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+. || +.+.| +.|.|++|.+|+.+.....
T Consensus 71 a~~a~~~-~~-~~~~g--~~l~V~~a~~~~~~~~~~~ 103 (105)
T 2dh8_A 71 VGTVLAS-RP-HTLDG--RNIDPKPCTPRGMQPSGPS 103 (105)
T ss_dssp HHHHHHH-CS-EEETT--EEEBCCCSCCSSCCTTCSC
T ss_pred HHHHHHh-CC-CeECC--EEEEEEEccCCCCCCCCCC
Confidence 6778888 77 56766 7899999999887765443
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.71 E-value=0.73 Score=39.35 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=28.8
Q ss_pred hHHHHHhhcCc-eeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGI-YTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~-~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+.|||. +.+.| ++|.|.||.+|+.+..++-
T Consensus 80 A~~Ai~~l~~~~~~l~G--r~l~V~~a~~k~~~~~~~~ 115 (119)
T 2ad9_A 80 ANTMVNYYTSVTPVLRG--QPIYIQFSNHKELKTDSSP 115 (119)
T ss_dssp HHHHHHHHHHHCCCBTT--BCCEEEECSSSSCCCCCCT
T ss_pred HHHHHHHhccCCceECC--eEEEEEEccCCCCCccccc
Confidence 77899999975 66766 7999999999998876654
No 113
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=82.43 E-value=0.92 Score=33.71 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=22.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+.|||.. +. .++|.|+||.+|.
T Consensus 56 a~~a~~~l~g~~-~~--g~~l~v~~a~~~~ 82 (83)
T 3md1_A 56 AQNAMDSMQGQD-LN--GRPLRINWAAKLE 82 (83)
T ss_dssp HHHHHHHHTTCE-ET--TEECEEEECCCCC
T ss_pred HHHHHHHhcCCe-eC--CcEEEEEecCcCC
Confidence 678999999987 44 5899999999864
No 114
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=82.12 E-value=0.59 Score=36.01 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=19.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||.. ++| +.|.|++|+++.++.
T Consensus 58 a~~Ai~~l~g~~-~~g--r~i~V~~~~~~~~~~ 87 (90)
T 3p5t_L 58 SKKLMDLLPKRE-LHG--QNPVVTPSNKLEHHH 87 (90)
T ss_dssp HHHHHHHGGGSC-SSS--CCCEECCC-------
T ss_pred HHHHHHHcCCCe-eCC--EEEEEEECCCCcccc
Confidence 678999999974 555 889999999987764
No 115
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=82.12 E-value=0.58 Score=35.59 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=19.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||.. +.| ++|.|++|+++...
T Consensus 55 a~~a~~~l~g~~-~~g--~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 55 VSEAIAKLDNTD-FMG--RTIRVTEANPKKSL 83 (90)
T ss_dssp HHHHHHTSCSSC-CSS--SSCSEEEC------
T ss_pred HHHHHHHhCCCE-ECC--eEEEEEEcCCCCCC
Confidence 678999999976 554 89999999987654
No 116
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.48 E-value=1 Score=36.77 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=28.1
Q ss_pred hHHHHHhhcCc-eeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGI-YTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~-~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.||+. +.++| ++|.|.||..++.+..+.+.
T Consensus 64 A~~Ai~~l~~~~~~~~G--r~l~V~~a~~~~~~~~~~~~ 100 (101)
T 2cq1_A 64 AITMVNYYSAVTPHLRN--QPIYIQYSNHKELKTSGPSS 100 (101)
T ss_dssp HHHHHHHHHHSCCEETT--EECEEEECSCSSCCCCCCSC
T ss_pred HHHHHHHhccCCceECC--cEEEEEEcCcccCcCCCCCC
Confidence 67899988753 45655 89999999999988766553
No 117
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.37 E-value=1.3 Score=34.64 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=22.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRP 32 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~p 32 (506)
|.+||+.|||+. +. .++|.|++|.++..
T Consensus 65 A~~Ai~~l~g~~-~~--gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 65 AIGAVNSLHRYK-IG--SKKILVSLATGASG 92 (96)
T ss_dssp HHHHHHHHTTEE-ET--TEEEEEEECCCSSC
T ss_pred HHHHHHHhCCCE-EC--CeEEEEEEcCCCCC
Confidence 778999999964 44 48999999977653
No 118
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.20 E-value=0.8 Score=38.47 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=28.7
Q ss_pred hHHHHHhhcCc-eeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGI-YTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~-~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+.|++. ..++| ++|.|.||.+|+-+...++
T Consensus 65 A~~Ai~~l~~~~~~l~G--r~l~V~~A~~~~~~~~~~~ 100 (105)
T 1sjq_A 65 ANTMVNYYTSVTPVLRG--QPIYIQFSNHKELKTDSSP 100 (105)
T ss_dssp HHHHHHHHTTSCCEETT--EECCBCCCSSSSCCCTTC-
T ss_pred HHHHHHHhccCCceECC--EEEEEEEcCCCCCCccccc
Confidence 77899999875 67776 7999999999888876665
No 119
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=79.56 E-value=0.52 Score=40.04 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=27.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||++|||.. +.| ++|.|+||..+..+.+..+|
T Consensus 85 A~~Ai~~lng~~-l~g--r~l~V~~a~~~~~~~~~~~~ 119 (127)
T 2a3j_A 85 AQAFVEAFQGYP-FQG--NPLVITFSETPQSQVAEDGS 119 (127)
T ss_dssp HHHHHHHSTTCC-CTT--SCCEEEECCCCCHHHHCC--
T ss_pred HHHHHHHHCCCE-eCC--CEEEEEEccCcchhcccccc
Confidence 788999999974 444 69999999998876665554
No 120
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=78.36 E-value=1.7 Score=35.62 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.1
Q ss_pred CCCeEEEecCCCCCCCCCCCC
Q 010598 19 DQPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 19 ~~PL~VrfAd~k~pr~gesrg 39 (506)
.+.|.|+||++++.|.+..++
T Consensus 111 g~~l~v~~a~~~~~~~~~~~~ 131 (139)
T 1u6f_A 111 NKRLKVALAASGHQRPGIAGA 131 (139)
T ss_dssp SCEEEEEESSCCCCCCCSSCC
T ss_pred CeEEEEEECCCCCCCCCCCCC
Confidence 478999999999888766554
No 121
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=78.15 E-value=2.1 Score=43.20 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=24.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||++. +.++|.|.||.++..+.
T Consensus 157 A~~Ai~~lng~~i---~gr~i~V~~a~~~~~~~ 186 (437)
T 3pgw_S 157 MHSAYKHADGKKI---DGRRVLVDVERGRTVKG 186 (437)
T ss_pred HHHHHHHcCCCEE---CCEEEEEEEeCCCCCCC
Confidence 7889999999865 45899999999876543
No 122
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=77.97 E-value=1.4 Score=39.94 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||++|||+..+.|| +.|.|.||.+++
T Consensus 97 A~~Ai~~LnG~~i~g~g-~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 97 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHHHSTTBCSSSSC-SCEEEEECSSSS
T ss_pred HHHHHHHhCCCEecCCC-cEEEEEEecCCc
Confidence 78999999999887664 679999998764
No 123
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.05 E-value=1.1 Score=38.10 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=23.2
Q ss_pred hHHHHHhhcCce--eecCCCCCeEEEecCC
Q 010598 2 ALAAINALNGIY--TMRGCDQPLTVRFADP 29 (506)
Q Consensus 2 AlaAI~~Lng~~--tm~Gc~~PL~VrfAd~ 29 (506)
|.+||++|||+. ..-|..+||.|.||+.
T Consensus 76 A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 76 SKRAYVTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp HHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred HHHHHHHhCCCEEccccCCCcEEEEEeccc
Confidence 789999999984 3455589999999984
No 124
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=76.29 E-value=0.79 Score=36.25 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=22.4
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+.|||+. +.| .++|.|++|+++.
T Consensus 67 A~~Ai~~lng~~-~~g-~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 67 AKKIIKSFHGKR-LDL-KHRLFLYTMKDVE 94 (100)
T ss_dssp HHHHHHHHTTCB-SSS-SCBCEEEESHHHH
T ss_pred HHHHHHHhCCcc-cCC-CeEEEEEECchhh
Confidence 778999999964 454 5899999998753
No 125
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.29 E-value=1.5 Score=37.55 Aligned_cols=29 Identities=38% Similarity=0.466 Sum_probs=23.5
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||++|||.....+ .++|.|.||.++.
T Consensus 75 A~~A~~~LnG~~i~g~-~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 75 AQKAKAALNGADIYAG-CCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHHHTTCCCBTT-BSEEEEECCSCSC
T ss_pred HHHHHHHhCCCEecCC-CeEEEEEEecCCc
Confidence 7889999999876654 3689999998764
No 126
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.69 E-value=1.6 Score=35.74 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=24.2
Q ss_pred hHHHHHhhcCc-eeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGI-YTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~-~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||. +.++| ++|.|.||..|+.+.
T Consensus 64 A~~Ai~~l~~~~~~i~G--r~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 64 AKECVTFAADVPVYIAG--QQAFFNYSTSKRITR 95 (104)
T ss_dssp HHHHHHHHHHSCCBSSS--SBCEEEECSSSSCCC
T ss_pred HHHHHHHhccCCceECC--EEEEEEEccCccccC
Confidence 67899999876 35555 899999999877653
No 127
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=75.43 E-value=0.57 Score=38.33 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=25.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||++|||++- ..|+|.|.|+|.++=..|
T Consensus 72 A~~Ai~~lnG~~f---~GR~i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 72 CQKAMQGLTGRKF---ANRVVVTKYCDPDSYHRR 102 (105)
T ss_dssp HHHHHHHHTTCEE---TTEECEEEEECHHHHHTT
T ss_pred HHHHHHHhCCCEe---CCCEEEEEEeCHHHHhhc
Confidence 7899999999875 359999999987654433
No 128
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.99 E-value=1.3 Score=34.13 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=25.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+ |||.. +.| ++|.|++|++++.+...++
T Consensus 58 a~~ai~-l~g~~-~~g--~~l~V~~a~~~~~~~~~~~ 90 (94)
T 2e5g_A 58 REAVLS-QSQHS-LGG--HRLRVRPREQKEFQSPASK 90 (94)
T ss_dssp HHHHHT-CSCCE-ETT--EECCCBCSCCSCCCCCCCC
T ss_pred HHHHHh-cCCeE-ECC--EEEEEEECCcCCCCCCCCC
Confidence 678999 99965 444 8999999998877665443
No 129
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=72.48 E-value=2 Score=35.10 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=25.2
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ge 36 (506)
|.+||++|||++. . .|+|.|.||+.++=+.++
T Consensus 69 A~~Ai~~lnG~~~-~--Gr~i~v~~a~~~~f~~~~ 100 (105)
T 2pe8_A 69 AIKAVVDLNGRYF-G--GRVVKACFYNLDKFRVLD 100 (105)
T ss_dssp HHHHHHHHTTCEE-T--TEECEEEECCHHHHHTTC
T ss_pred HHHHHHHHCCCEE-C--CcEEEEEEcCHHHhhhhh
Confidence 7899999999975 3 599999999876544443
No 130
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=72.18 E-value=1.2 Score=36.41 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=23.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||+.. . .++|.|+||..++.|
T Consensus 61 A~~Ai~~lng~~~-~--gr~i~V~~a~~~~~~ 89 (110)
T 3s8s_A 61 AKETVKNLHLTSV-M--GNIIHAQLDIKGQQR 89 (110)
T ss_dssp HHHHHHHHTTCEE-T--TEECEEEECSTTHHH
T ss_pred HHHHHHHhCCCEE-C--CeEEEEEECCCCcHH
Confidence 7789999999865 3 589999999876654
No 131
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=71.55 E-value=2.5 Score=31.70 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=22.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+|| .|||.. +. .++|.|++|.+++|.
T Consensus 61 a~~a~-~~~g~~-~~--g~~l~V~~a~~~~pg 88 (89)
T 3ucg_A 61 VRTSL-ALDESL-FR--GRQIKVIPKRTNRPG 88 (89)
T ss_dssp HHHHG-GGTTCE-ET--TEECEEEETTTTSCC
T ss_pred HHHHH-hcCCCE-EC--CcEEEEEEccCCCCC
Confidence 67899 899987 54 489999999987764
No 132
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=70.79 E-value=2.3 Score=37.10 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.2
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||++|||+..+.|| ++|-|.||.+++
T Consensus 79 A~~Ai~~LnG~~i~g~~-~~LrI~~ak~~~ 107 (130)
T 3zzy_A 79 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTS 107 (130)
T ss_dssp HHHHHHHHTTCEEETTE-EEEEEEECSCSS
T ss_pred HHHHHHHcCCCeecCCC-cEEEEEecCCCc
Confidence 78999999999988765 489999997764
No 133
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=70.71 E-value=3.3 Score=33.50 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=22.8
Q ss_pred hHHHHHhhcCceeecCCC---CCeEEEecCCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCD---QPLTVRFADPKRPRPGDSRS 39 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~---~PL~VrfAd~k~pr~gesrg 39 (506)
|.+||+.|||+. +.|.. .-|.|+.+.++.++.+.+|+
T Consensus 64 a~~Ai~~l~g~~-~~gr~~~~~~i~v~~~~~~~~~~~r~rs 103 (115)
T 3beg_B 64 MTYAVRKLDNTK-FRSHEGETAYIRVKVDGPRSPSYGRSRS 103 (115)
T ss_dssp HHHHHHHHTTCB-CCCTTSCCCBCEEEECC----CCCCSCC
T ss_pred HHHHHHHhCCCE-ECCcEeeeEEEEeccCCCCCCCCCCCCC
Confidence 778999999964 56643 23777777777766655554
No 134
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=70.48 E-value=1.7 Score=39.97 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=21.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPK 30 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k 30 (506)
|.+||+.|||+. |. .++|.|+||.++
T Consensus 125 a~~Ai~~lng~~-~~--Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 125 SKKLMDLLPKRE-LH--GQNPVVTPVNKQ 150 (229)
T ss_dssp HHHHHTTSTTSC-BT--TBCCEEEECCHH
T ss_pred HHHHHHHcCCCe-EC--CEEeEEEECCCC
Confidence 688999999975 44 489999999753
No 135
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=69.53 E-value=1.2 Score=35.47 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=23.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||.. +. .++|.|.||++++.+
T Consensus 60 A~~A~~~l~g~~-~~--g~~l~v~~a~~~~~~ 88 (115)
T 3lqv_A 60 AKNAVDHLSGFN-VS--NRYLVVLYYNANRAF 88 (115)
T ss_dssp HHHHHHHHTTCB-SS--SCBCEEEECCHHHHT
T ss_pred HHHHHHHcCCCE-EC--CeEEEEEEecCChhh
Confidence 678999999975 44 479999999987654
No 136
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=69.43 E-value=17 Score=32.71 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=23.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+||+.|||.. +.| ++|.|+||+.+.-..+
T Consensus 65 a~~A~~~l~g~~-~~g--~~l~v~~a~~~~~~~~ 95 (282)
T 3pgw_A 65 ATNALRSMQGFP-FYD--KPMRIQYAKTDSDIIA 95 (282)
T ss_pred HHHHHHHhcCCe-eCC--cEEEEEEeccCcchhh
Confidence 678999999954 444 8999999987765333
No 137
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=69.37 E-value=2.5 Score=35.29 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=19.1
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEec
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFA 27 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfA 27 (506)
|.+||++|||+ .+. .++|.|+||
T Consensus 56 A~~Ai~~Ln~~-~l~--gr~I~V~~A 78 (89)
T 2wbr_A 56 ANKAQMALNNC-VLA--NTTIFAESP 78 (89)
T ss_dssp HHHHHHHHTTE-EET--TEEEEEECC
T ss_pred HHHHHHHhcCC-EEC--CcEEEEEEC
Confidence 78999999984 333 589999999
No 138
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=65.22 E-value=4.7 Score=30.72 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=21.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+.|||+. +. .++|.|+||..+.
T Consensus 53 a~~Ai~~l~g~~-~~--g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 53 AQNAIQMFHQYS-FR--GKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHHHHHTTEE-ET--TEEEEEEECCCCC
T ss_pred HHHHHHHhCCCe-EC--CcEEEEEEcCCCc
Confidence 678999999976 44 4889999996654
No 139
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=61.70 E-value=4.9 Score=40.13 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.6
Q ss_pred hHHHHHhhcCceeecCCCC--CeEEEecCC
Q 010598 2 ALAAINALNGIYTMRGCDQ--PLTVRFADP 29 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~--PL~VrfAd~ 29 (506)
|.+||++|||+..+..|.+ +|.|.|++.
T Consensus 69 A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 69 SKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp HHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred HHHHHHHhCCCccccccCCceEEEEEEeec
Confidence 7899999999999977777 899999973
No 140
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.51 E-value=7.9 Score=30.00 Aligned_cols=32 Identities=6% Similarity=0.174 Sum_probs=21.4
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~gesr 38 (506)
|.+||+ ..+.|.| ++|.|+||.+|.......|
T Consensus 70 a~~A~~---~~~~~~g--~~l~v~~a~~~~~~~~~~~ 101 (103)
T 2cqg_A 70 QVKVMS---QRHMIDG--RWCDCKLPNSKQSQDSGPS 101 (103)
T ss_dssp HHHHHH---SCEEETT--EEEEEECCCTTCCCCCSSC
T ss_pred HHHHHH---cCCeeCC--eEEEEEecCCCCcCCCCCC
Confidence 345555 3456766 7999999998866544443
No 141
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.43 E-value=5.6 Score=33.53 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=22.7
Q ss_pred hHHHHHhhcCc-eeecCCCCCeEEEecCCCCC
Q 010598 2 ALAAINALNGI-YTMRGCDQPLTVRFADPKRP 32 (506)
Q Consensus 2 AlaAI~~Lng~-~tm~Gc~~PL~VrfAd~k~p 32 (506)
|.+||+.||+. ..++| ++|.|.||..|+.
T Consensus 75 A~~Ai~~l~~~~~~l~G--r~l~V~~a~~~~~ 104 (112)
T 1x4f_A 75 AMAMVDHCLKKALWFQG--RCVKVDLSEKYKK 104 (112)
T ss_dssp HHHHHHHHHHSCCCSSS--SCCEEEEECSCSS
T ss_pred HHHHHHHhccCCceECC--EEEEEEECccccc
Confidence 67899999874 45665 8999999986654
No 142
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.09 E-value=8.2 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=21.1
Q ss_pred HhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 7 NALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 7 ~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
++|+|+ .+.++.++|.|++|.+|+.+.
T Consensus 56 ~~~~~~-~~~~~g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 56 QSLCGE-DLIIKGISVHISNAEPKHNSN 82 (88)
T ss_dssp HHTTTC-EEEETTEEEEEECCCCCCCCC
T ss_pred HHHhcC-CceeCCEEEEEEecCCCCCCC
Confidence 457777 577778999999999887654
No 143
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=60.06 E-value=6.8 Score=35.07 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=21.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+.|||+. +.| ++|.|+||..+.
T Consensus 55 A~~Ai~~lng~~-~~g--~~l~v~~s~~~~ 81 (205)
T 3tyt_A 55 VDRAITHLNNNF-MFG--QKMNVCVSKQPA 81 (205)
T ss_dssp HHHHHHHHTTCE-ETT--EECEEEECSCSC
T ss_pred HHHHHHHhCCCE-ECC--ceEEEEEccCCc
Confidence 788999999965 444 899999997654
No 144
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=59.90 E-value=23 Score=30.00 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=22.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|..||+.|||.. +. .++|.|++|..+.
T Consensus 54 a~~A~~~l~~~~-~~--g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 54 AQLAMSHLNGHK-LH--GKPIRITLSKHQN 80 (198)
T ss_dssp HHHHHHHHTTCC-CS--SCCCEEEECCCCS
T ss_pred HHHHHHHhCCCe-ec--CeEEEEEEecCCC
Confidence 678999999965 44 4899999998764
No 145
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.55 E-value=7.9 Score=30.50 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.8
Q ss_pred CCCCeEEEecCCCCCCCCCCC
Q 010598 18 CDQPLTVRFADPKRPRPGDSR 38 (506)
Q Consensus 18 c~~PL~VrfAd~k~pr~gesr 38 (506)
+.++|.|+||.+++.+....+
T Consensus 93 ~g~~l~v~~a~~~~~~~~~~~ 113 (115)
T 2cpx_A 93 YGKILVIEFGKNKKQRSSGPS 113 (115)
T ss_dssp SSCBCEEEECCCCSCCCCCCC
T ss_pred CCcEEEEEEccCCCCCCCCCC
Confidence 468999999999988766544
No 146
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=54.95 E-value=6.4 Score=32.95 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=21.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPK 30 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k 30 (506)
|.+||++|||++- . .|+|.|.|++.+
T Consensus 68 A~~Ai~~lnG~~f-~--GR~i~v~~~~~~ 93 (114)
T 3s6e_A 68 AIAAVNALHGRWF-A--GKMITAAYVPLP 93 (114)
T ss_dssp HHHHHHHHTTCEE-T--TEECEEEEECHH
T ss_pred HHHHHHHhCCCEE-C--CEEEEEEEEcHH
Confidence 7899999999975 3 589999999754
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.60 E-value=9.9 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=21.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+.|||+. +. .++|.|.||..+.
T Consensus 59 A~~Ai~~l~g~~-~~--g~~l~V~~a~~~~ 85 (111)
T 1whx_A 59 ARKAFRHLAYSK-FH--HVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHHHHHTTCB-SS--SSBCEEEEEETTT
T ss_pred HHHHHHHhCCCE-EC--CeEEEEEECCCCc
Confidence 678999999975 44 5789999997643
No 148
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.45 E-value=7.5 Score=33.05 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=23.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRP 32 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~p 32 (506)
|.+||+.|||.... .|||.|.||-.++-
T Consensus 59 A~~A~~~l~G~~l~---gr~i~v~~A~~~sd 86 (96)
T 2diu_A 59 AERAQKRMENEDVF---GNRIIVSFTPKNRE 86 (96)
T ss_dssp HHHHHHHHTTCCSS---SSCCEEESSCCSCC
T ss_pred HHHHHHHhcCCccC---CceEEEEecCCCcc
Confidence 77899999998754 69999999987764
No 149
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.78 E-value=12 Score=29.36 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.3
Q ss_pred CCCeEEEecCCCCCCCCCC
Q 010598 19 DQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 19 ~~PL~VrfAd~k~pr~ges 37 (506)
.++|.|++|.+++++.+..
T Consensus 92 g~~l~V~~a~~~~~~~~~~ 110 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMNSGP 110 (113)
T ss_dssp TEECEEECSSCCCCSTTCC
T ss_pred CCEEEEEECCCCCCCCCCC
Confidence 4899999999998875443
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=50.44 E-value=16 Score=29.39 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=24.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
|.+||+.|||... ..++|.|+++.++....
T Consensus 54 a~~A~~~l~~~~~---~g~~i~v~~~~~~~~~~ 83 (166)
T 3md3_A 54 ANIALQTLNGKQI---ENNIVKINWAFQSQQSS 83 (166)
T ss_dssp HHHHHHHHTTCEE---TTEECEEEECCCCCCCC
T ss_pred HHHHHHHcCCCcc---CCCeeEEEEcCCCCCCC
Confidence 6789999999875 36899999998876543
No 151
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=50.36 E-value=8.4 Score=34.73 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=25.1
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ge 36 (506)
|.+||+.|||.. +. .++|.|+||+++..+..+
T Consensus 150 a~~A~~~l~~~~-~~--g~~i~v~~a~~~~~~~~~ 181 (284)
T 3smz_A 150 AARAKSDLLGKP-LG--PRTLYVHWTDAGQLTPAL 181 (284)
T ss_dssp HHHHHHHHTTCE-ET--TEECEEEECCGGGCCTTT
T ss_pred HHHHHHHhCCCE-eC--CcEEEEEECCCCCCCccc
Confidence 678999999964 44 579999999988765443
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=48.53 E-value=14 Score=30.08 Aligned_cols=28 Identities=39% Similarity=0.592 Sum_probs=22.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRP 32 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~p 32 (506)
|.+||+.|||... . .++|.|++++++..
T Consensus 58 A~~a~~~l~~~~~-~--g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 58 SQRAIKVLNGITV-R--NKRLKVSYARPGGE 85 (168)
T ss_dssp HHHHHHHHTTCEE-T--TEECEEEECCCCSS
T ss_pred HHHHHHhcCCCEe-C--CcEEEEEecCCCcc
Confidence 6789999999754 3 58999999987754
No 153
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.38 E-value=7.8 Score=31.09 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=20.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+. || +.|.| ++|.|++|.++.
T Consensus 70 a~~Al~~-~~-~~~~g--r~i~v~~a~~~~ 95 (114)
T 2cpy_A 70 ARKSERL-HR-KKLNG--REAFVHVVTLED 95 (114)
T ss_dssp HHHHGGG-CS-EEETT--EEEEEEEECHHH
T ss_pred HHHHHHh-CC-CccCC--eEEEEEECCHHH
Confidence 5678887 77 45655 899999998876
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=47.62 E-value=10 Score=30.53 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=22.4
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRP 32 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~p 32 (506)
|.+||+.|||... . .++|.|+++.++..
T Consensus 57 A~~a~~~l~~~~~-~--g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 57 AEKAINTLNGLRL-Q--TKTIKVSYARPSSA 84 (167)
T ss_dssp HHHHHHHHTTCEE-T--TEECEEEECCCCCG
T ss_pred HHHHHHHcCCCcc-C--CceEEEEecCCCcc
Confidence 6789999999554 3 58999999987654
No 155
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=46.26 E-value=13 Score=31.09 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=30.0
Q ss_pred CCCCceEEeCCCCCcccccCCCCceeccCCccC
Q 010598 363 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 395 (506)
Q Consensus 363 ~~s~WtEh~SpDGr~YYYNt~TkEStWEKPeEl 395 (506)
--..|....-..|..-||++.|+.-+|.||--+
T Consensus 29 LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~l 61 (79)
T 3le4_A 29 LPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFL 61 (79)
T ss_dssp CCTTEEEEECTTSSEEEEETTTTEEESSCCCCC
T ss_pred CCCccEEEEecCCceEEEeccceEEeccCCeEe
Confidence 345799999999999999999999999999876
No 156
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=45.70 E-value=30 Score=30.63 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=22.0
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+.|||... . .++|.|++|.++.
T Consensus 85 A~~Ai~~l~g~~~-~--g~~l~v~~a~~~~ 111 (229)
T 2adc_A 85 AQLAMSHLNGHKL-H--GKPIRITLSKHQN 111 (229)
T ss_dssp HHHHHHHHTTCBC-S--SSBCEEECCSCCC
T ss_pred HHHHHHHhCCCeE-C--CeEEEEEEecCcc
Confidence 6789999999654 3 4899999998764
No 157
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=45.63 E-value=12 Score=33.85 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=22.3
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+||+.|||... .| ++|.|++|++++.+
T Consensus 172 a~~A~~~l~g~~~-~g--~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 172 ARYCVEKLNGLKI-EG--YTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHHHHTTCEE-TT--EECEEEECCCC---
T ss_pred HHHHHHHhCCCEe-CC--cEEEEEECCCCccc
Confidence 6789999999764 55 89999999987654
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=45.10 E-value=16 Score=30.65 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=24.4
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 36 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ge 36 (506)
|.+|| .|||.+ +. .++|.|+++..+++..+.
T Consensus 64 A~~Al-~l~g~~-~~--g~~i~v~~~~~~~~~~~~ 94 (198)
T 2yh0_A 64 TTQAM-AFDGII-FQ--GQSLKIRRPHDYQPLPGM 94 (198)
T ss_dssp HHHHG-GGTTEE-ET--TEEEEEECCCCCCCCCCS
T ss_pred HHHHH-HhcCCE-Ec--CceEEEeCCCCCCCCCCC
Confidence 67889 899976 44 579999999988776654
No 159
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=42.40 E-value=17 Score=28.00 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=15.1
Q ss_pred CCCeEEEecCCCCCCCC
Q 010598 19 DQPLTVRFADPKRPRPG 35 (506)
Q Consensus 19 ~~PL~VrfAd~k~pr~g 35 (506)
.++|.|++|.+++.+.|
T Consensus 84 g~~l~V~~a~~~~~~~g 100 (101)
T 1fj7_A 84 GNEIKLEKPKGRDGTRG 100 (101)
T ss_dssp TBCCEEECCSCCCCSSC
T ss_pred CcEEEEEEcCCCCCCCC
Confidence 58999999999988876
No 160
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.83 E-value=28 Score=27.66 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=18.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+ +|| ..|.| +.|.|..+.++.
T Consensus 68 a~~Al~-~~~-~~~~g--r~i~V~~~~~~~ 93 (102)
T 1wez_A 68 AVAAMA-KDK-ANMQH--RYVELFLNSTAG 93 (102)
T ss_dssp HHHHHT-TSS-CCSSS--SCCEEEEECCCC
T ss_pred HHHHHH-hCC-CeECC--cEEEEEECCCCC
Confidence 678884 677 44554 789999887654
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=39.16 E-value=16 Score=28.34 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=17.6
Q ss_pred HhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 7 NALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 7 ~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
++|||. .+.++.+.|.|++|.+|+.+
T Consensus 62 ~~~~~~-~~~~~g~~v~v~~a~~k~~~ 87 (89)
T 3d2w_A 62 QSLCGE-DLIIKGISVHISNAEPKHNK 87 (89)
T ss_dssp HHHTTC-EEEETTEEEEEEECC-----
T ss_pred HHHcCC-CcccCCEEEEEEEcCCCCcC
Confidence 368887 66788899999999988754
No 162
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=37.57 E-value=19 Score=29.74 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=22.1
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 33 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr 33 (506)
|.+|| .|||.... .++|.|+++.++..+
T Consensus 67 a~~A~-~l~g~~~~---g~~l~v~~~~~~~~~ 94 (175)
T 1fje_B 67 LEKAL-ELTGLKVF---GNEIKLEKPKGRDSK 94 (175)
T ss_dssp HHHHH-HGGGEEET---TEEEEEECCCCSSCS
T ss_pred HHHHH-hcCCCEeC---CeEEEEecCCCcccc
Confidence 67899 49997654 589999999987654
No 163
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.78 E-value=19 Score=30.28 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=22.7
Q ss_pred ChHHHHHhhcCceeecCCCCCeEEEecCCCCCCC
Q 010598 1 MALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 34 (506)
Q Consensus 1 ~AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~ 34 (506)
+|++||+ |||.. +. .|.|-|+.|-++=.+-
T Consensus 61 sAlaAi~-mnG~~-v~--Gr~LkV~lkt~dW~~~ 90 (91)
T 2dnr_A 61 SALNVLS-LNGKE-LL--NRTITIALKSPSGPSS 90 (91)
T ss_dssp HHHHGGG-GTTCE-ET--TEEEEEEECCCSSCSC
T ss_pred HHHHHHh-cCCeE-eC--CeEEEEEeCCCCcccC
Confidence 3899998 99985 54 5789999987765443
No 164
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.30 E-value=19 Score=27.75 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.8
Q ss_pred CCCeEEEecCCCCCC
Q 010598 19 DQPLTVRFADPKRPR 33 (506)
Q Consensus 19 ~~PL~VrfAd~k~pr 33 (506)
.++|.|+||.+++++
T Consensus 83 g~~l~V~~a~~~~~~ 97 (97)
T 2e5j_A 83 TDTLRVALARQQRDK 97 (97)
T ss_dssp SSCCEEEECCCCCCC
T ss_pred CcEEEEEEcCCCCCC
Confidence 478999999999875
No 165
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.84 E-value=32 Score=27.16 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=14.5
Q ss_pred CCCeEEEecCCCCCCCCCC
Q 010598 19 DQPLTVRFADPKRPRPGDS 37 (506)
Q Consensus 19 ~~PL~VrfAd~k~pr~ges 37 (506)
.+.|.|++|.+|+.+....
T Consensus 95 g~~l~V~~a~~~~~~~~~~ 113 (116)
T 1x4b_A 95 GRVVEPKRAVAREESGSGP 113 (116)
T ss_dssp TEEEEEECCSSCCCCCCSC
T ss_pred CEEEEEEECCCCccCCCCC
Confidence 3799999999987665443
No 166
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=31.12 E-value=36 Score=27.71 Aligned_cols=30 Identities=33% Similarity=0.606 Sum_probs=22.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCCCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 35 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~pr~g 35 (506)
|.+|| .|||.. +. .++|.|+++..+++..+
T Consensus 64 A~~A~-~~~~~~-~~--g~~i~v~~~~~~~~~~~ 93 (172)
T 2g4b_A 64 TTQAM-AFDGII-FQ--GQSLKIRRPHDYQPLPG 93 (172)
T ss_dssp HHHHG-GGTTCE-ET--TEECEEECCSSCCCCTT
T ss_pred HHHHH-HhCCcE-ec--CceeeecCCcccCCCCC
Confidence 67889 899976 44 57999999887766543
No 167
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.35 E-value=16 Score=29.56 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=19.6
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPK 30 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k 30 (506)
|.+||+ |||++ |. .++|.|.+|..+
T Consensus 80 a~~Al~-~~g~~-~~--gr~i~V~~a~~~ 104 (124)
T 1wel_A 80 YKAALC-RHKQY-MG--NRFIQVHPITKK 104 (124)
T ss_dssp HHHHHT-SCSBC-ST--TSCBEEEEECHH
T ss_pred HHHHHH-hCCCe-EC--CcEEEEEECCHH
Confidence 678999 98854 54 479999999764
No 168
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=30.02 E-value=22 Score=28.06 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=13.8
Q ss_pred CCCeEEEecCCCCCCCC
Q 010598 19 DQPLTVRFADPKRPRPG 35 (506)
Q Consensus 19 ~~PL~VrfAd~k~pr~g 35 (506)
.++|.|+||++++.+..
T Consensus 94 g~~l~V~~a~~~~~~~~ 110 (115)
T 2cpz_A 94 MKRLKVQLKRSKNDSKS 110 (115)
T ss_dssp TEECEEECCCCSCCCCC
T ss_pred CEEEEEEEcCCCCcCCC
Confidence 48999999998877543
No 169
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=28.84 E-value=33 Score=31.07 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.9
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADP 29 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~ 29 (506)
|.+||+.|||++. . .++|.|+|+++
T Consensus 71 A~~A~~~l~g~~i-~--g~~l~v~~a~~ 95 (261)
T 3sde_A 71 AEIAKAELDGTIL-K--SRPLRIRFATH 95 (261)
T ss_dssp HHHHHHHHTTCEE-T--TEECEEEECCC
T ss_pred HHHHHHHcCCcEE-C--CceeEeeeccc
Confidence 6789999999874 3 58999999975
No 170
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.82 E-value=31 Score=26.42 Aligned_cols=15 Identities=7% Similarity=0.211 Sum_probs=12.8
Q ss_pred CCCeEEEecCCCCCC
Q 010598 19 DQPLTVRFADPKRPR 33 (506)
Q Consensus 19 ~~PL~VrfAd~k~pr 33 (506)
.++|.|+||++++.+
T Consensus 85 g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 85 ENIIKVAISNSGPSS 99 (100)
T ss_dssp SCEEEEEECCCCSCC
T ss_pred CEEEEEEECCCCCCC
Confidence 378999999998765
No 171
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.89 E-value=22 Score=28.89 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=19.8
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+ |||+ .|.| ++|.|..|..+.
T Consensus 74 a~~Al~-~~g~-~~~g--r~i~V~~a~~~~ 99 (118)
T 2db1_A 74 VKLALK-KDRE-SMGH--RYIEVFKSHRTE 99 (118)
T ss_dssp HHHHGG-GTTE-EETT--EEEEEEEECHHH
T ss_pred HHHHHh-cCCC-eECC--eEEEEEECCHHH
Confidence 678898 8985 4655 799999987653
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=24.25 E-value=18 Score=28.67 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=19.7
Q ss_pred hHHHHHhhcCceeecCCCCCeEEEecCCCC
Q 010598 2 ALAAINALNGIYTMRGCDQPLTVRFADPKR 31 (506)
Q Consensus 2 AlaAI~~Lng~~tm~Gc~~PL~VrfAd~k~ 31 (506)
|.+||+ +||.+ |.| ++|.|+.|.++.
T Consensus 68 a~~Al~-~~~~~-~~g--r~i~V~~a~~~~ 93 (107)
T 2lmi_A 68 VQKALE-KHRMY-MGQ--RYVEVYEINNED 93 (107)
T ss_dssp HHHHHT-TTTCC-SSS--SCCCCEECCHHH
T ss_pred HHHHHH-hCcce-eCC--eEEEEEECCHHH
Confidence 678899 88854 554 789999998653
Done!