Citrus Sinensis ID: 010599
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 506 | 2.2.26 [Sep-21-2011] | |||||||
| B9DFI7 | 616 | Probable methyltransferas | yes | no | 0.996 | 0.818 | 0.835 | 0.0 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.984 | 0.801 | 0.722 | 0.0 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.984 | 0.786 | 0.603 | 0.0 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.982 | 0.777 | 0.596 | 0.0 | |
| Q9ZPH9 | 633 | Probable methyltransferas | no | no | 1.0 | 0.799 | 0.583 | 0.0 | |
| O80844 | 631 | Probable methyltransferas | no | no | 1.0 | 0.801 | 0.565 | 0.0 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.950 | 0.787 | 0.535 | 1e-156 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.972 | 0.815 | 0.468 | 1e-137 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.978 | 0.825 | 0.453 | 1e-134 | |
| Q93W95 | 600 | Probable methyltransferas | no | no | 0.954 | 0.805 | 0.459 | 1e-130 |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/510 (83%), Positives = 472/510 (92%), Gaps = 6/510 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPR+SM YRERHC PE EKLHCLIPAPKGYVTPF WPKSRDYVPYANAPYK+LTVEKA
Sbjct: 106 MTFPRDSMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKA 165
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEG+VFRFPGGGTQFPQGADKYIDQLASVIP++NGTVRTALDTGCGVASWGAYL
Sbjct: 166 IQNWIQYEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYL 225
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY +RAFDMAHCSRCLIPWG
Sbjct: 226 WSRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWG 285
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG Y++EVDRVLRPGGYW+LSGPPINWK NYKAWQRPKE+LQEEQRKIEE A LLCWE
Sbjct: 286 ANDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWE 345
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------E 294
KK E GEIA+WQK+VNDE+CR+R+DD RANFCK+ D DDVWYKKME CITPYP E
Sbjct: 346 KKYEHGEIAIWQKRVNDEACRSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDE 405
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGGEL+AFP+RL A+PPRISSGSI GV+ ++Y++D+ +WKKHV AYK+IN LLD+GRYR
Sbjct: 406 VAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYR 465
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNAGFGGFAAA++S KLWVMNVVPT+A+KN LGV+YERGLIGIYHDWCEAFSTYPR
Sbjct: 466 NIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPR 525
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA+ LFSLYK+KCN +DILLEMDRILRPEGA+IIRD+VD +IKVK+I+ GMRWD
Sbjct: 526 TYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDA 585
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGNST 504
K+VDHEDGPLVPEK+L+AVKQYWV + ST
Sbjct: 586 KLVDHEDGPLVPEKVLIAVKQYWVTNSTST 615
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/508 (72%), Positives = 425/508 (83%), Gaps = 10/508 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
M FPRE+M YRERHCPP+ EKL CL+PAPKGY+TPFPWPKSRDYV YANAP+KSLTVEKA
Sbjct: 105 MKFPRENMIYRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKA 164
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW+Q++GNVF+FPGGGT FPQGAD YI++LASVIPIK+G+VRTALDTGCGVASWGAY+
Sbjct: 165 GQNWVQFQGNVFKFPGGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYM 224
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
RNV+ MSFAPRD+HEAQVQFALERGVPA+I VLG+I +PY +RAFDMA CSRCLIPW
Sbjct: 225 LKRNVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWT 284
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
AN+G Y++EVDRVLRPGGYWVLSGPPINWKT +K W R K EL EQ++IE IA LCWE
Sbjct: 285 ANEGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWE 344
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------E 294
KK EKG+IA+++KK+ND SC + + CK D DDVWYK++E C+TP+P E
Sbjct: 345 KKYEKGDIAIFRKKINDRSCDR---STPVDTCKRKDTDDVWYKEIETCVTPFPKVSNEEE 401
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGG+LK FPERL+A+PP IS G I GV ESYQED N WKK V YK+INRL+ S RYR
Sbjct: 402 VAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYR 461
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
N+MDMNAG GGFAAA++S K WVMNV+PT+ +KNTL V+YERGLIGIYHDWCE FSTYPR
Sbjct: 462 NVMDMNAGLGGFAAALESPKSWVMNVIPTI-NKNTLSVVYERGLIGIYHDWCEGFSTYPR 520
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYD IHA G+FSLY+ C +EDILLE DRILRPEG +I RDEVD + V+KIV GMRWDT
Sbjct: 521 TYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDT 580
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGN 502
K++DHEDGPLVPEKILVA KQYWVA +
Sbjct: 581 KLMDHEDGPLVPEKILVATKQYWVAGDD 608
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/505 (60%), Positives = 393/505 (77%), Gaps = 7/505 (1%)
Query: 3 FPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQ 62
F R M YRERHCP ++E L+CLIP P Y PF WP+SRDY Y N P+K L+VEKA+Q
Sbjct: 115 FDRNMMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQ 174
Query: 63 NWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS 122
NWIQ EG+ FRFPGGGT FP+GAD YID +A +IP+ +G +RTA+DTGCGVAS+GAYL
Sbjct: 175 NWIQVEGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLK 234
Query: 123 RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182
R+++A+SFAPRD+HEAQVQFALERGVPA+IG++G+ ++PY +RAFD+AHCSRCLIPW N
Sbjct: 235 RDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKN 294
Query: 183 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 242
DG Y++EVDRVLRPGGYW+LSGPPINWK ++ W+R +E+L++EQ IE++A LCW+K
Sbjct: 295 DGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKV 354
Query: 243 SEKGEIAVWQKKVNDESCRARRDDSRA-NFCKSSDADDVWYKKMEGCITPYPEV------ 295
+EKG++++WQK +N C+ + ++++ C S +AD WYK +E CITP PE
Sbjct: 355 TEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDS 414
Query: 296 AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRN 355
AGG L+ +P+R +A+PPRI G+IP ++AE ++ED+ WK+ + YKKI L GR+RN
Sbjct: 415 AGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGRFRN 474
Query: 356 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 415
IMDMNA GGFAA++ WVMNVVP A+K TLGVIYERGLIG Y DWCE FSTYPRT
Sbjct: 475 IMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRT 534
Query: 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475
YD+IHA GLFSLY+ +C++ ILLEMDRILRPEG +++RD V+ + KV+KIV GM+W ++
Sbjct: 535 YDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQ 594
Query: 476 MVDHEDGPLVPEKILVAVKQYWVAS 500
+VDHE GP PEKILVAVK YW
Sbjct: 595 IVDHEKGPFNPEKILVAVKTYWTGQ 619
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/505 (59%), Positives = 383/505 (75%), Gaps = 8/505 (1%)
Query: 3 FPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQ 62
F R M YRERHCP ++E L+CLIP P Y PF WP+SRDY Y N P+K L++EKAIQ
Sbjct: 132 FDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQ 191
Query: 63 NWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS 122
NWIQ EG FRFPGGGT FP+GAD YID +A +IP+ +G +RTA+DTGCGVAS+GAYL
Sbjct: 192 NWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLK 251
Query: 123 RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182
R+++AMSFAPRD+HEAQVQFALERGVPA+IG++G+ ++PY +RAFD+AHCSRCLIPW N
Sbjct: 252 RDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQN 311
Query: 183 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 242
DG Y+ EVDRVLRPGGYW+LSGPPINWK +K W+R +E+L++EQ IE+ A LCW+K
Sbjct: 312 DGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKV 371
Query: 243 SEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADD-VWYKKMEGCITPYPEV----- 295
+EKG++++WQK +N C + +R C SD D WYK +E C+TP PE
Sbjct: 372 TEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDE 431
Query: 296 -AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
AGG L+ +P R +A+PPRI G+IP ++AE ++ED+ WK+ ++ YK+I L GR+R
Sbjct: 432 FAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSRGRFR 491
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNA GGFAAA+ WVMNVVP A+K TLGVI+ERG IG Y DWCE FSTYPR
Sbjct: 492 NIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPR 551
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA GLFS+Y+++C++ ILLEMDRILRPEG ++ RD V+ + K++ I GMRW +
Sbjct: 552 TYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKS 611
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVA 499
+++DHE GP PEKIL+AVK YW
Sbjct: 612 RILDHERGPFNPEKILLAVKSYWTG 636
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/516 (58%), Positives = 389/516 (75%), Gaps = 10/516 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
+ FPRE + YRERHCP + E + C IPAP GY PF WP+SRD +AN P+ LTVEK
Sbjct: 116 LNFPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKK 175
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW++YE + F FPGGGT FP+GAD YID++ +I +K+G++RTA+DTGCGVAS+GAYL
Sbjct: 176 NQNWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYL 235
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRN++ MSFAPRD+HEAQVQFALERGVPA+IGVL +I++P+ +RAFD+AHCSRCLIPWG
Sbjct: 236 MSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWG 295
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
+G Y+IEVDRVLRPGGYW+LSGPPINW+ ++K W+R +++L EQ +IE +A LCW
Sbjct: 296 QYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWR 355
Query: 241 KKSEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADDVWYKKMEGCITPYP------ 293
K ++ ++AVWQK N C R R R FC + + WY K+E C+TP P
Sbjct: 356 KLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSE 415
Query: 294 --EVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKIN-RLLDS 350
EVAGG+L +PERL A+PPRI SGS+ G++ + + ++ KW++ V+ YKK + +L ++
Sbjct: 416 IKEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAET 475
Query: 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS 410
GRYRN +DMNA GGFA+A+ +WVMNVVP A NTLGVIYERGLIG Y +WCEA S
Sbjct: 476 GRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMS 535
Query: 411 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM 470
TYPRTYD IHA +FSLYKD+C++EDILLEMDRILRP+G++IIRD++D + KVKKI M
Sbjct: 536 TYPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAM 595
Query: 471 RWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 506
+W+ ++ DHE+GPL EKIL VK+YW A SS
Sbjct: 596 QWEGRIGDHENGPLEREKILFLVKEYWTAPAPDQSS 631
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/523 (56%), Positives = 386/523 (73%), Gaps = 17/523 (3%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
+ F RE + YR+RHCP EE L C IPAP GY TPF WP SRD +AN P+ LTVEK
Sbjct: 107 LKFSRERLEYRQRHCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKK 166
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW++YE + F FPGGGT FP+GAD YID + +I + +G++RTA+DTGCGVAS+GAYL
Sbjct: 167 NQNWVRYENDRFWFPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYL 226
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRN+ MSFAPRD+HEAQVQFALERGVPA+IG++ TI++PY SRAFD+AHCSRCLIPWG
Sbjct: 227 LSRNITTMSFAPRDTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWG 286
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
NDG Y++EVDRVLRPGGYW+LSGPPINW+ +K W+R ++L EQ +IE++A LCW+
Sbjct: 287 QNDGAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWK 346
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSR-ANFCK-SSDADDVWYKKMEGCITPYPE---- 294
K ++ ++A+WQK N C+ R+ + FC+ D D WY KM+ C+TP PE
Sbjct: 347 KVVQRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDA 406
Query: 295 -----VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKIN-RLL 348
VAGG+++ +P RL AIPPR++ G++ ++ E++ E++ WK+ V+ YKK++ +L
Sbjct: 407 EDLKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLG 466
Query: 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA 408
++GRYRN++DMNA GGFAAA+ +WVMNVVP A NTLGVIYERGLIG Y +WCEA
Sbjct: 467 ETGRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEA 526
Query: 409 FSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 468
STYPRTYD IHA +F+LY+ +C E+ILLEMDRILRP G +IIRD+VD +IKVK++
Sbjct: 527 MSTYPRTYDFIHADSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTK 586
Query: 469 GMRWDTKMVDHEDGPLVPEKILVAVKQYWVASG-----NSTSS 506
G+ W+ ++ DHE GP EKI AVKQYW N+TS+
Sbjct: 587 GLEWEGRIADHEKGPHEREKIYYAVKQYWTVPAPDEDKNNTSA 629
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/487 (53%), Positives = 336/487 (68%), Gaps = 6/487 (1%)
Query: 11 RERHCPP-EEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEG 69
RERHCP +EK CL+P P GY TPFPWP+SR Y + N P+K L K QNW++ EG
Sbjct: 121 RERHCPDIAQEKFRCLVPKPTGYKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEG 180
Query: 70 NVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMS 129
+ F FPGGGT FP G Y+D + SV+P+ +G++RT LD GCGVAS+GA+L + ++ MS
Sbjct: 181 DRFVFPGGGTSFPGGVKDYVDVILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMS 240
Query: 130 FAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIE 189
APRD HEAQVQFALERG+PA++GVL T K+PY SR+FDM HCSRCL+ W + DG Y++E
Sbjct: 241 IAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLME 300
Query: 190 VDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIA 249
VDRVLRP GYWVLSGPP+ + +K +R +ELQ + K+ ++ LCWEK +E +
Sbjct: 301 VDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVV 360
Query: 250 VWQKKVNDESCRARRDDSR-ANFCKSSDADDVWYKKMEGCITPYPEVAGGE---LKAFPE 305
+W+K N CR R + C SSD D WYK+ME CITP P+V LK +PE
Sbjct: 361 IWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDTNKTVLKNWPE 420
Query: 306 RLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG 365
RL + PR+ +GSI G + ++ D+N W++ V Y + L +G+YRN++DMNAG GG
Sbjct: 421 RLNHV-PRMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKFLSNGKYRNVIDMNAGLGG 479
Query: 366 FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLF 425
FAAA+ +WVMNVVP NTLGV+Y+RGLIG Y +WCEA STYPRTYDLIHA+G+F
Sbjct: 480 FAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVF 539
Query: 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLV 485
SLY DKC+I DILLEM RILRPEGA+IIRD D ++KVK I MRW+ M ++
Sbjct: 540 SLYLDKCDIVDILLEMQRILRPEGAVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFD 599
Query: 486 PEKILVA 492
IL+
Sbjct: 600 HGTILIV 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/506 (46%), Positives = 337/506 (66%), Gaps = 14/506 (2%)
Query: 8 MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQY 67
+++ ERHCPP EK CLIP P GY P WPKSR+ Y N PY + +K+ Q+W++
Sbjct: 103 LSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKK 162
Query: 68 EGNVFRFPGGGTQFPQGADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRNVI 126
EG+ F FPGGGT FP+G Y+D + +IP +K+GTVRTA+DTGCGVASWG L R ++
Sbjct: 163 EGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGIL 222
Query: 127 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRY 186
++S APRD+HEAQVQFALERG+PA++G++ T ++P+ S AFDMAHCSRCLIPW G Y
Sbjct: 223 SLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIY 282
Query: 187 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246
++E+ R++RPGG+WVLSGPP+N+ ++ W E+ + + K++ + +C++K ++K
Sbjct: 283 LLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKD 342
Query: 247 EIAVWQKKVNDESCR---ARRDDSRANFCKSS-DADDVWYKKMEGCIT-PYPEVAG---G 298
+IAVWQ K++D+SC A+ ++ C S + D WY + C+ P P+V G
Sbjct: 343 DIAVWQ-KLSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKVKKSGLG 401
Query: 299 ELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMD 358
+ +PERL+ P RI G + G SA S + D KWK V YKK+ L + + RN+MD
Sbjct: 402 SIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALGTDKIRNVMD 459
Query: 359 MNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDL 418
MN +GGF+AA+ +WVMNVV + + N+L V+++RGLIG YHDWCEAFSTYPRTYDL
Sbjct: 460 MNTVYGGFSAALIEDPIWVMNVVSSYS-ANSLPVVFDRGLIGTYHDWCEAFSTYPRTYDL 518
Query: 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478
+H LF+L +C ++ ILLEMDRILRP G +IIR+ + + + G+RW + +
Sbjct: 519 LHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLAKGIRWSCRREE 578
Query: 479 HEDGPLVPEKILVAVKQYWVASGNST 504
E + EKILV K+ W +S ++
Sbjct: 579 TEYA-VKSEKILVCQKKLWFSSNQTS 603
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/507 (45%), Positives = 328/507 (64%), Gaps = 12/507 (2%)
Query: 8 MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQY 67
+ + ERHCPP ++ CL+P P GY P WPKS+D Y N PY + +K+ QNW++
Sbjct: 97 LTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRK 156
Query: 68 EGNVFRFPGGGTQFPQGADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRNVI 126
EG F FPGGGT FP G Y+D + +IP +K+GT+RTA+DTGCGVASWG L R ++
Sbjct: 157 EGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGIL 216
Query: 127 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRY 186
+S APRD+HEAQVQFALERG+PA++G++ T ++P+ S +FDMAHCSRCLIPW G Y
Sbjct: 217 TVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVY 276
Query: 187 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246
++EV R+LRPGG+WVLSGPP+N++ +K W EE + K++E+ + +C++ ++K
Sbjct: 277 LLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKD 336
Query: 247 EIAVWQKKVNDESCRARRDDSRANFCKSSDA---DDVWYKKMEGC-ITPYPEVAGGELKA 302
+IAVWQK ++ +D A K D+ D WY + C + P P++ +L++
Sbjct: 337 DIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKLKKTDLES 396
Query: 303 ---FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDM 359
+PERL+ P RIS +PG + ++ D +KWK YKK+ + S + RN+MDM
Sbjct: 397 TPKWPERLHTTPERIS--DVPGGNGNVFKHDDSKWKTRAKHYKKLLPAIGSDKIRNVMDM 454
Query: 360 NAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLI 419
N +GG AAA+ + LWVMNVV + A NTL V+++RGLIG YHDWCEAFSTYPRTYDL+
Sbjct: 455 NTAYGGLAAALVNDPLWVMNVVSSYA-ANTLPVVFDRGLIGTYHDWCEAFSTYPRTYDLL 513
Query: 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH 479
H GLF+ +C+++ ++LEMDRILRP G IIR+ + + +RW +
Sbjct: 514 HVDGLFTSESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQT 573
Query: 480 EDGPLVPEKILVAVKQYWVASGNSTSS 506
E EK+L+ K+ W +S S+ +
Sbjct: 574 ESAS-ANEKLLICQKKLWYSSNASSET 599
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/511 (45%), Positives = 317/511 (62%), Gaps = 28/511 (5%)
Query: 5 RESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNW 64
RE YRERHCP EE CLIP P GY P PWP+S + +AN PY + K Q W
Sbjct: 105 REMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGW 164
Query: 65 IQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN 124
++ EG F FPGGGT FP GA +YI++LA IP+ GT+RTALD GCGVAS+G L S+
Sbjct: 165 MKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQG 224
Query: 125 VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDG 184
++A+SFAPRDSH++Q+QFALERGVPA + +LGT ++P+ + +FD+ HCSRCLIP+ A +
Sbjct: 225 ILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNA 284
Query: 185 RYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSE 244
Y IEVDR+LRPGGY V+SGPP+ W K W ++ +A LC+E +
Sbjct: 285 TYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWA-----------DLQAVARALCYELIAV 333
Query: 245 KGEIAVWQKKVNDESCRARRDDSRANFC-KSSDADDVWYKKMEGCITPYPEVAG----GE 299
G +W+K V D SC +++ C +S D WY K++ C+T V G G
Sbjct: 334 DGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALGT 392
Query: 300 LKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYK-KINRLLDSGRYRNIMD 358
+ +PERL +P R + + ++ D+ +W + V Y+ +N L S RN+MD
Sbjct: 393 ISKWPERLTKVPSR---AIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMD 449
Query: 359 MNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDL 418
MNA FGGFAA + S +WVMNV+P TL VIY+RGLIG+YHDWCE FSTYPRTYD
Sbjct: 450 MNAFFGGFAATLASDPVWVMNVIPA-RKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTYDF 508
Query: 419 IHAHGLFSLY------KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRW 472
IH G+ SL K +C++ D+++EMDRILRPEG ++IRD + + KV ++ +RW
Sbjct: 509 IHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRW 568
Query: 473 DTKMVDHEDGPLVPEKILVAVKQYWVASGNS 503
+ + + E EKIL+A K W NS
Sbjct: 569 SSSIHEKEPESHGREKILIATKSLWKLPSNS 599
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 506 | ||||||
| 6752888 | 608 | unknown [Malus x domestica] | 0.996 | 0.828 | 0.867 | 0.0 | |
| 357516137 | 610 | hypothetical protein MTR_8g055840 [Medic | 1.0 | 0.829 | 0.859 | 0.0 | |
| 357516139 | 507 | hypothetical protein MTR_8g055840 [Medic | 1.0 | 0.998 | 0.859 | 0.0 | |
| 217074996 | 610 | unknown [Medicago truncatula] | 1.0 | 0.829 | 0.857 | 0.0 | |
| 356567513 | 608 | PREDICTED: probable methyltransferase PM | 0.996 | 0.828 | 0.863 | 0.0 | |
| 356498262 | 607 | PREDICTED: probable methyltransferase PM | 0.994 | 0.828 | 0.871 | 0.0 | |
| 356499801 | 607 | PREDICTED: probable methyltransferase PM | 0.994 | 0.828 | 0.865 | 0.0 | |
| 224099725 | 615 | predicted protein [Populus trichocarpa] | 0.996 | 0.819 | 0.845 | 0.0 | |
| 356526918 | 608 | PREDICTED: probable methyltransferase PM | 0.996 | 0.828 | 0.857 | 0.0 | |
| 224111282 | 617 | predicted protein [Populus trichocarpa] | 1.0 | 0.820 | 0.837 | 0.0 |
| >gi|6752888|gb|AAF27920.1|AF220204_1 unknown [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/506 (86%), Positives = 478/506 (94%), Gaps = 2/506 (0%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPREDMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
+QNWIQYEGNVFRFPGGGTQFPQGADKYIDQLA+VIPIKNGTVRTALDTGCGVASWGAYL
Sbjct: 164 VQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLAAVIPIKNGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRNV+AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY SRAFDMAHCSRCLIPWG
Sbjct: 224 LSRNVLAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
NDG+Y+ EVDRVLRPGGYWVLSGPPINWK NY+AWQRPKE+LQEEQR+IEE A LLCWE
Sbjct: 284 INDGKYLKEVDRVLRPGGYWVLSGPPINWKNNYQAWQRPKEDLQEEQRQIEEAAKLLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSEKGE A+WQK+V+ +SC R+DDSRANFCK+ +AD VWYKKMEGCITPYP+V+ GEL
Sbjct: 344 KKSEKGETAIWQKRVDSDSCGDRQDDSRANFCKADEADSVWYKKMEGCITPYPKVSSGEL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP+RLYA+PPRISSGS+PGVS E Y+ED+NKWKKHVNAYK+IN+L+D+GRYRNIMDMN
Sbjct: 404 KPFPKRLYAVPPRISSGSVPGVSVEDYEEDNNKWKKHVNAYKRINKLIDTGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG GGFAAAI+S KLWVMNV+PT+A+KNTLGV+YERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 464 AGLGGFAAAIESPKLWVMNVMPTIAEKNTLGVVYERGLIGIYHDWCEGFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
AHG+FS+Y KCN EDILLEMDRILRPEGA+I RDEVD +IKVKKIVGGMRWDTK+VDHE
Sbjct: 524 AHGVFSMYNGKCNWEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKLVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNSTSS 506
DGPLVPEK+LVAVKQYWV GNSTS+
Sbjct: 584 DGPLVPEKVLVAVKQYWV--GNSTSA 607
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357516137|ref|XP_003628357.1| hypothetical protein MTR_8g055840 [Medicago truncatula] gi|355522379|gb|AET02833.1| hypothetical protein MTR_8g055840 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/506 (85%), Positives = 473/506 (93%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI +GTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPINDGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV+AMSFAPRDSHEAQVQFALERGVPAVIGV GTIK+PY SRAFDMAHCSRCLIPWG
Sbjct: 224 WSRNVVAMSFAPRDSHEAQVQFALERGVPAVIGVFGTIKLPYPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A LCWE
Sbjct: 284 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSEK EIA+WQK + ESCR+R+DDS FC+SSD DDVWYKK++ C+TP P+V+GG+L
Sbjct: 344 KKSEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP+RLYAIPPR+SSGSIPGVS+E+YQ D+ WKKHVNAYKKIN LLDSGRYRNIMDMN
Sbjct: 404 KPFPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 464 AGLGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
A+GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHE
Sbjct: 524 ANGLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNSTSS 506
DGPLVPEK+L+AVKQYWV GNSTS+
Sbjct: 584 DGPLVPEKVLIAVKQYWVTDGNSTST 609
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357516139|ref|XP_003628358.1| hypothetical protein MTR_8g055840 [Medicago truncatula] gi|355522380|gb|AET02834.1| hypothetical protein MTR_8g055840 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/506 (85%), Positives = 473/506 (93%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 1 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI +GTVRTALDTGCGVASWGAYL
Sbjct: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPINDGTVRTALDTGCGVASWGAYL 120
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV+AMSFAPRDSHEAQVQFALERGVPAVIGV GTIK+PY SRAFDMAHCSRCLIPWG
Sbjct: 121 WSRNVVAMSFAPRDSHEAQVQFALERGVPAVIGVFGTIKLPYPSRAFDMAHCSRCLIPWG 180
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A LCWE
Sbjct: 181 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWE 240
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSEK EIA+WQK + ESCR+R+DDS FC+SSD DDVWYKK++ C+TP P+V+GG+L
Sbjct: 241 KKSEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDL 300
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP+RLYAIPPR+SSGSIPGVS+E+YQ D+ WKKHVNAYKKIN LLDSGRYRNIMDMN
Sbjct: 301 KPFPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMN 360
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 361 AGLGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIH 420
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
A+GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHE
Sbjct: 421 ANGLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHE 480
Query: 481 DGPLVPEKILVAVKQYWVASGNSTSS 506
DGPLVPEK+L+AVKQYWV GNSTS+
Sbjct: 481 DGPLVPEKVLIAVKQYWVTDGNSTST 506
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217074996|gb|ACJ85858.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/506 (85%), Positives = 472/506 (93%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI +GTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPINDGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV+AMSFAPRDSHEAQVQFALERGVPAVIGV GTIK+P SRAFDMAHCSRCLIPWG
Sbjct: 224 WSRNVVAMSFAPRDSHEAQVQFALERGVPAVIGVFGTIKLPNPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A LCWE
Sbjct: 284 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSEK EIA+WQK + ESCR+R+DDS FC+SSD DDVWYKK++ C+TP P+V+GG+L
Sbjct: 344 KKSEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP+RLYAIPPR+SSGSIPGVS+E+YQ D+ WKKHVNAYKKIN LLDSGRYRNIMDMN
Sbjct: 404 KPFPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 464 AGLGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
A+GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHE
Sbjct: 524 ANGLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNSTSS 506
DGPLVPEK+L+AVKQYWV GNSTS+
Sbjct: 584 DGPLVPEKVLIAVKQYWVTDGNSTST 609
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567513|ref|XP_003551963.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/504 (86%), Positives = 469/504 (93%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+M YRERHCPPEEEKL C+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMVYRERHCPPEEEKLRCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVF+FPGGGTQFPQGADKYIDQ+ASVIPI NGTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFKFPGGGTQFPQGADKYIDQIASVIPITNGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV+AMSFAPRD+HEAQVQFALERGVPA+IGVLG+IK+PY SRAFDMAHCSRCLIPWG
Sbjct: 224 WSRNVVAMSFAPRDNHEAQVQFALERGVPAIIGVLGSIKLPYPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
AN+G YM+EVDRVLRPGGYWVLSGPPINWK NYK+W RPKEEL+EEQRKIEEIA LCWE
Sbjct: 284 ANNGIYMMEVDRVLRPGGYWVLSGPPINWKANYKSWLRPKEELEEEQRKIEEIAKQLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
K+SEK E+A+WQK V+ ESCR R+DDS FC+SSDADDVWYKKME CITP P+V GG L
Sbjct: 344 KRSEKAEMAIWQKVVDSESCRRRQDDSSVEFCQSSDADDVWYKKMETCITPTPKVTGGNL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP RLYAIPPRI+SGS+PGVS+E+YQ+D+ KWKKHVNAYKK NRLLDSGRYRNIMDMN
Sbjct: 404 KPFPSRLYAIPPRIASGSVPGVSSETYQDDNKKWKKHVNAYKKTNRLLDSGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
+G G FAAAI SS LWVMNVVPT+A+ NTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH
Sbjct: 464 SGLGSFAAAIHSSNLWVMNVVPTIAEMNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
AHG+FSLYKDKCN EDILLEMDRILRPEGA+I RDEVD +IKVKKIVGGMRWDTKMVDHE
Sbjct: 524 AHGVFSLYKDKCNAEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKMVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNST 504
DGPLVPEK+LVAVKQYWV + ST
Sbjct: 584 DGPLVPEKVLVAVKQYWVTNSTST 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498262|ref|XP_003517972.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/504 (87%), Positives = 472/504 (93%), Gaps = 1/504 (0%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGAD+YIDQLASVIPIK+GTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFRFPGGGTQFPQGADRYIDQLASVIPIKDGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY S AFDMAHCSRCLIPWG
Sbjct: 224 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSAAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYKAWQR KE+L+EEQRKIEE A LLCWE
Sbjct: 284 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKAWQRSKEDLEEEQRKIEETAKLLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSE EIA+WQK V+ ESCR+R++DS FC+S+DA+DVWYKKME CITP P+V G+
Sbjct: 344 KKSENSEIAIWQKTVDTESCRSRQEDSSVKFCESTDANDVWYKKMEVCITPSPKVY-GDY 402
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FPERLYAIPPRI+SGS+PGVS E+YQEDS KWKKHVNAYKKINRLLD+GRYRNIMDMN
Sbjct: 403 KPFPERLYAIPPRIASGSVPGVSVETYQEDSKKWKKHVNAYKKINRLLDTGRYRNIMDMN 462
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAA IQSSKLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH
Sbjct: 463 AGLGSFAADIQSSKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 522
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
+ LFSLYKDKC+ EDILLEMDRILRPEGA+IIRDEVD +IKVKK+V GMRWDTKMVDHE
Sbjct: 523 SDSLFSLYKDKCDTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLVEGMRWDTKMVDHE 582
Query: 481 DGPLVPEKILVAVKQYWVASGNST 504
DGPLVPEK+L+AVKQYWVA+ ST
Sbjct: 583 DGPLVPEKVLIAVKQYWVANATST 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499801|ref|XP_003518725.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/504 (86%), Positives = 474/504 (94%), Gaps = 1/504 (0%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+MNYRERHCPPEEEKLHC+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMNYRERHCPPEEEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVFRFPGGGTQFPQGAD+YIDQLASVIPIK+GTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFRFPGGGTQFPQGADRYIDQLASVIPIKDGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY S AFDMAHCSRCLIPWG
Sbjct: 224 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSAAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG YM+EVDRVLRPGGYWVLSGPPINWK NYKAWQRPKE+L+EEQRKIEE A LLCWE
Sbjct: 284 ANDGMYMMEVDRVLRPGGYWVLSGPPINWKINYKAWQRPKEDLEEEQRKIEETAKLLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
KKSE EIA+WQK ++ ESCR+R+++S FC+S+DA+DVWYKKME C+TP P+V+ G+
Sbjct: 344 KKSENSEIAIWQKTLDTESCRSRQEESSVKFCESTDANDVWYKKMEVCVTPSPKVS-GDY 402
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FPERLYAIPPRI+SGS+PGVS E+YQED+ KWKKHVNAYKKINRLLD+GRYRNIMDMN
Sbjct: 403 KPFPERLYAIPPRIASGSVPGVSVETYQEDNKKWKKHVNAYKKINRLLDTGRYRNIMDMN 462
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAIQSSKLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIH
Sbjct: 463 AGLGSFAAAIQSSKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIH 522
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
+ LFSLYKDKC+ EDILLEMDRILRPEGA+IIRDEVD +IKVKK+V GMRW+TKMVDHE
Sbjct: 523 SDSLFSLYKDKCDTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLVEGMRWNTKMVDHE 582
Query: 481 DGPLVPEKILVAVKQYWVASGNST 504
DGPLVPEKIL+AVKQYWVA+ ST
Sbjct: 583 DGPLVPEKILIAVKQYWVANATST 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099725|ref|XP_002311593.1| predicted protein [Populus trichocarpa] gi|222851413|gb|EEE88960.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/512 (84%), Positives = 478/512 (93%), Gaps = 8/512 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+M YRERHCPP+EEKLHCLIPAP+GYVTPFPWPKSRDYVP+ANAPYKSLTVEKA
Sbjct: 105 MTFPRENMIYRERHCPPQEEKLHCLIPAPQGYVTPFPWPKSRDYVPFANAPYKSLTVEKA 164
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNW+QYEGNVFRFPGGGTQFPQGADKYIDQLASV+P NGTVRTALDTGCGVAS GAYL
Sbjct: 165 IQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVLPFTNGTVRTALDTGCGVASLGAYL 224
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVI MSFAPRDSHEAQVQFALERGVPAVIGV G++K+PY S+AFDMAHCSRCLIPWG
Sbjct: 225 WSRNVITMSFAPRDSHEAQVQFALERGVPAVIGVFGSVKLPYPSKAFDMAHCSRCLIPWG 284
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG Y++EVDRVLRPGGYWVLSGPPINWK NYK+WQRPKEELQEEQRKIEE A LLCW+
Sbjct: 285 ANDGMYLMEVDRVLRPGGYWVLSGPPINWKNNYKSWQRPKEELQEEQRKIEETAKLLCWD 344
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------E 294
KK EKGE+A+WQK+VN +SCRAR+DDSRA FCKS+D DDVWYKKME CITPY E
Sbjct: 345 KKYEKGEMAIWQKRVNADSCRARQDDSRATFCKSADVDDVWYKKMEACITPYSDSGSSDE 404
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGG LK FPERLYAIPPR++SGSIPGVS E+YQ+ +N+WKKHVNAYKKIN+L+DSGRYR
Sbjct: 405 VAGGALKVFPERLYAIPPRVASGSIPGVSVETYQDYNNEWKKHVNAYKKINKLIDSGRYR 464
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNAG GGFAAA++S KLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE+FSTYPR
Sbjct: 465 NIMDMNAGLGGFAAALESPKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCESFSTYPR 524
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA G+FSLY+DKC++EDILLEMDRILRPEGA+I RDEVD ++KV+K+VGGM+WDT
Sbjct: 525 TYDLIHASGVFSLYRDKCDMEDILLEMDRILRPEGAVIFRDEVDVLVKVRKMVGGMKWDT 584
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 506
KMVDHEDGPLVPEKILVAVKQYWV GNSTS+
Sbjct: 585 KMVDHEDGPLVPEKILVAVKQYWV--GNSTSA 614
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526918|ref|XP_003532062.1| PREDICTED: probable methyltransferase PMT2-like isoform 1 [Glycine max] gi|356526920|ref|XP_003532063.1| PREDICTED: probable methyltransferase PMT2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/504 (85%), Positives = 466/504 (92%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPRE+M YRERHCPPEEEKL C+IPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA
Sbjct: 104 MTFPRENMVYRERHCPPEEEKLQCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 163
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEGNVF+FPGGGTQFPQGADKYIDQ+ASVIPI NGTVRTALDTGCGVASWGAYL
Sbjct: 164 IQNWIQYEGNVFKFPGGGTQFPQGADKYIDQIASVIPITNGTVRTALDTGCGVASWGAYL 223
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVIAMSFAPRD+HEAQVQFALERGVPA++GVLG+IK+PY SRAFDMAHCSRCLIPWG
Sbjct: 224 WSRNVIAMSFAPRDNHEAQVQFALERGVPAIVGVLGSIKLPYPSRAFDMAHCSRCLIPWG 283
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
AN+G YM+EVDRVLRPGGYWVLSGPPINWK NYK+W RPKEEL+EEQRKIEE A LCWE
Sbjct: 284 ANNGIYMMEVDRVLRPGGYWVLSGPPINWKANYKSWLRPKEELEEEQRKIEETAKQLCWE 343
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGEL 300
K+SEK E+A+WQK V+ ESC+ R+DDS FC+SSDADDVWYKKME CITP P+V GG L
Sbjct: 344 KRSEKAEMAIWQKVVDSESCQRRKDDSSVEFCESSDADDVWYKKMEACITPTPKVTGGNL 403
Query: 301 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMN 360
K FP RLYAIPPRI+SG +PGVS+E+YQ+D+ KWKKHV AYKK NRLLDSGRYRNIMDMN
Sbjct: 404 KPFPSRLYAIPPRIASGLVPGVSSETYQDDNKKWKKHVKAYKKTNRLLDSGRYRNIMDMN 463
Query: 361 AGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 420
AG G FAAAI SSKLWVMNVVPT+A+ NTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH
Sbjct: 464 AGLGSFAAAIHSSKLWVMNVVPTIAEANTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIH 523
Query: 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480
AHG+FSLYKDKC EDILLEMDRILRPEGA+I RDEVD +IKVKKIVGGMRWDTKMVDHE
Sbjct: 524 AHGVFSLYKDKCKAEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKMVDHE 583
Query: 481 DGPLVPEKILVAVKQYWVASGNST 504
DGPLVPEK+LVAVKQYWV + ST
Sbjct: 584 DGPLVPEKVLVAVKQYWVTNSTST 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111282|ref|XP_002315803.1| predicted protein [Populus trichocarpa] gi|222864843|gb|EEF01974.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/512 (83%), Positives = 476/512 (92%), Gaps = 6/512 (1%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPR++M YRERHCPP++EKLHCLIPAPKGYVTPFPWPKSRDYVP+ANAPYKSLTVEKA
Sbjct: 105 MTFPRDNMIYRERHCPPQQEKLHCLIPAPKGYVTPFPWPKSRDYVPFANAPYKSLTVEKA 164
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNW+QYEGNVFRFPGGGTQFPQGADKYIDQLASV+PI NGTVRTALDTGCGVAS GAYL
Sbjct: 165 IQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVLPIANGTVRTALDTGCGVASLGAYL 224
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGV GT+K+PY SRAFDMAHCSRCLIPWG
Sbjct: 225 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVFGTVKLPYPSRAFDMAHCSRCLIPWG 284
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWE 240
ANDG Y++EVDRVLRPGGYWVLSGPPINWK NY++WQRPKEELQEEQRKIEE A LLCW+
Sbjct: 285 ANDGMYLMEVDRVLRPGGYWVLSGPPINWKNNYRSWQRPKEELQEEQRKIEETAKLLCWD 344
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------E 294
KK E GE+A+WQK++N +SCR R+DDSRA CKS+D DD WYK+ME C+TPYP E
Sbjct: 345 KKYENGEMAIWQKRLNADSCRGRQDDSRATLCKSTDTDDAWYKQMEACVTPYPDSGSSDE 404
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGG+LK FPERLYA+PPR++SGS+PGVSA++YQ + +WKKHVNAYKKIN+LLDSGRYR
Sbjct: 405 VAGGQLKVFPERLYAVPPRVASGSVPGVSAKTYQVYNKEWKKHVNAYKKINKLLDSGRYR 464
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNAG GGFAAA++S KLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCEAFSTYPR
Sbjct: 465 NIMDMNAGMGGFAAALESPKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEAFSTYPR 524
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA G+FSLYKD+CN+EDILLEMDRILRPEGA+I RDEV+ +IKV+K+VG MRW T
Sbjct: 525 TYDLIHASGVFSLYKDRCNMEDILLEMDRILRPEGAVIFRDEVNVLIKVRKMVGQMRWHT 584
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 506
KMVDHEDGPLVPEKILVAVKQYWVA GNSTS+
Sbjct: 585 KMVDHEDGPLVPEKILVAVKQYWVAGGNSTST 616
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 506 | ||||||
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.996 | 0.818 | 0.811 | 1.3e-240 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.990 | 0.806 | 0.706 | 2.3e-206 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.978 | 0.781 | 0.595 | 4.3e-173 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.978 | 0.774 | 0.586 | 4.9e-172 | |
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 1.0 | 0.799 | 0.571 | 2e-168 | |
| TAIR|locus:2050679 | 631 | AT2G45750 [Arabidopsis thalian | 0.982 | 0.787 | 0.565 | 1e-164 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.948 | 0.785 | 0.528 | 2.4e-140 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.972 | 0.815 | 0.471 | 2.5e-129 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.976 | 0.823 | 0.448 | 1.6e-125 | |
| TAIR|locus:2117733 | 600 | QUA3 "QUASIMODO 3" [Arabidopsi | 0.952 | 0.803 | 0.462 | 5.8e-121 |
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2319 (821.4 bits), Expect = 1.3e-240, P = 1.3e-240
Identities = 414/510 (81%), Positives = 459/510 (90%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
MTFPR+SM YRERHC PE EKLHCLIPAPKGYVTPF WPKSRDYVPYANAPYK+LTVEKA
Sbjct: 106 MTFPRDSMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKA 165
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
IQNWIQYEG+VFRFPGGGTQFPQGADKYIDQLASVIP++NGTVRTALDTGCGVASWGAYL
Sbjct: 166 IQNWIQYEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYL 225
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
WSRNV AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK+PY +RAFDMAHCSRCLIPWG
Sbjct: 226 WSRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWG 285
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWE 240
ANDG Y++EVDRVLRPGGYW+LSGPPINWK NYKAWQRP A LLCWE
Sbjct: 286 ANDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWE 345
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPE------ 294
KK E GEIA+WQK+VNDE+CR+R+DD RANFCK+ D DDVWYKKME CITPYPE
Sbjct: 346 KKYEHGEIAIWQKRVNDEACRSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDE 405
Query: 295 VAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
VAGGEL+AFP+RL A+PPRISSGSI GV+ ++Y++D+ +WKKHV AYK+IN LLD+GRYR
Sbjct: 406 VAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYR 465
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNAGFGGFAAA++S KLWVMNVVPT+A+KN LGV+YERGLIGIYHDWCEAFSTYPR
Sbjct: 466 NIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPR 525
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA+ LFSLYK+KCN +DILLEMDRILRPEGA+IIRD+VD +IKVK+I+ GMRWD
Sbjct: 526 TYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDA 585
Query: 475 KMVDHEDGPLVPEKILVAVKQYWVASGNST 504
K+VDHEDGPLVPEK+L+AVKQYWV + ST
Sbjct: 586 KLVDHEDGPLVPEKVLIAVKQYWVTNSTST 615
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1996 (707.7 bits), Expect = 2.3e-206, P = 2.3e-206
Identities = 364/515 (70%), Positives = 421/515 (81%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
M FPRE+M YRERHCPP+ EKL CL+PAPKGY+TPFPWPKSRDYV YANAP+KSLTVEKA
Sbjct: 105 MKFPRENMIYRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKA 164
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW+Q++GNVF+FPGGGT FPQGAD YI++LASVIPIK+G+VRTALDTGCGVASWGAY+
Sbjct: 165 GQNWVQFQGNVFKFPGGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYM 224
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
RNV+ MSFAPRD+HEAQVQFALERGVPA+I VLG+I +PY +RAFDMA CSRCLIPW
Sbjct: 225 LKRNVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWT 284
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWE 240
AN+G Y++EVDRVLRPGGYWVLSGPPINWKT +K W R A LCWE
Sbjct: 285 ANEGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWE 344
Query: 241 KKSEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADDVWYKKMEGCITPYP------ 293
KK EKG+IA+++KK+ND SC R+ D+ CK D DDVWYK++E C+TP+P
Sbjct: 345 KKYEKGDIAIFRKKINDRSCDRSTPVDT----CKRKDTDDVWYKEIETCVTPFPKVSNEE 400
Query: 294 EVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRY 353
EVAGG+LK FPERL+A+PP IS G I GV ESYQED N WKK V YK+INRL+ S RY
Sbjct: 401 EVAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRY 460
Query: 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP 413
RN+MDMNAG GGFAAA++S K WVMNV+PT+ +KNTL V+YERGLIGIYHDWCE FSTYP
Sbjct: 461 RNVMDMNAGLGGFAAALESPKSWVMNVIPTI-NKNTLSVVYERGLIGIYHDWCEGFSTYP 519
Query: 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 473
RTYD IHA G+FSLY+ C +EDILLE DRILRPEG +I RDEVD + V+KIV GMRWD
Sbjct: 520 RTYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWD 579
Query: 474 TKMVDHEDGPLVPEKILVAVKQYWVAS--GNSTSS 506
TK++DHEDGPLVPEKILVA KQYWVA GN++ S
Sbjct: 580 TKLMDHEDGPLVPEKILVATKQYWVAGDDGNNSPS 614
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1682 (597.2 bits), Expect = 4.3e-173, P = 4.3e-173
Identities = 299/502 (59%), Positives = 381/502 (75%)
Query: 3 FPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQ 62
F R M YRERHCP ++E L+CLIP P Y PF WP+SRDY Y N P+K L+VEKA+Q
Sbjct: 115 FDRNMMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQ 174
Query: 63 NWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS 122
NWIQ EG+ FRFPGGGT FP+GAD YID +A +IP+ +G +RTA+DTGCGVAS+GAYL
Sbjct: 175 NWIQVEGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLK 234
Query: 123 RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182
R+++A+SFAPRD+HEAQVQFALERGVPA+IG++G+ ++PY +RAFD+AHCSRCLIPW N
Sbjct: 235 RDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKN 294
Query: 183 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 242
DG Y++EVDRVLRPGGYW+LSGPPINWK ++ W+R A LCW+K
Sbjct: 295 DGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKV 354
Query: 243 SEKGEIAVWQKKVNDESCRARRDDSRAN-FCKSSDADDVWYKKMEGCITPYPEV------ 295
+EKG++++WQK +N C+ + ++++ C S +AD WYK +E CITP PE
Sbjct: 355 TEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDS 414
Query: 296 AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRN 355
AGG L+ +P+R +A+PPRI G+IP ++AE ++ED+ WK+ + YKKI L GR+RN
Sbjct: 415 AGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGRFRN 474
Query: 356 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 415
IMDMNA GGFAA++ WVMNVVP A+K TLGVIYERGLIG Y DWCE FSTYPRT
Sbjct: 475 IMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRT 534
Query: 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475
YD+IHA GLFSLY+ +C++ ILLEMDRILRPEG +++RD V+ + KV+KIV GM+W ++
Sbjct: 535 YDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQ 594
Query: 476 MVDHEDGPLVPEKILVAVKQYW 497
+VDHE GP PEKILVAVK YW
Sbjct: 595 IVDHEKGPFNPEKILVAVKTYW 616
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
Identities = 295/503 (58%), Positives = 372/503 (73%)
Query: 3 FPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQ 62
F R M YRERHCP ++E L+CLIP P Y PF WP+SRDY Y N P+K L++EKAIQ
Sbjct: 132 FDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQ 191
Query: 63 NWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS 122
NWIQ EG FRFPGGGT FP+GAD YID +A +IP+ +G +RTA+DTGCGVAS+GAYL
Sbjct: 192 NWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLK 251
Query: 123 RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182
R+++AMSFAPRD+HEAQVQFALERGVPA+IG++G+ ++PY +RAFD+AHCSRCLIPW N
Sbjct: 252 RDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQN 311
Query: 183 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 242
DG Y+ EVDRVLRPGGYW+LSGPPINWK +K W+R A LCW+K
Sbjct: 312 DGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKV 371
Query: 243 SEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADD-VWYKKMEGCITPYPEV----- 295
+EKG++++WQK +N C + +R C SD D WYK +E C+TP PE
Sbjct: 372 TEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDE 431
Query: 296 -AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 354
AGG L+ +P R +A+PPRI G+IP ++AE ++ED+ WK+ ++ YK+I L GR+R
Sbjct: 432 FAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSRGRFR 491
Query: 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 414
NIMDMNA GGFAAA+ WVMNVVP A+K TLGVI+ERG IG Y DWCE FSTYPR
Sbjct: 492 NIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPR 551
Query: 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474
TYDLIHA GLFS+Y+++C++ ILLEMDRILRPEG ++ RD V+ + K++ I GMRW +
Sbjct: 552 TYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKS 611
Query: 475 KMVDHEDGPLVPEKILVAVKQYW 497
+++DHE GP PEKIL+AVK YW
Sbjct: 612 RILDHERGPFNPEKILLAVKSYW 634
|
|
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
Identities = 295/516 (57%), Positives = 379/516 (73%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
+ FPRE + YRERHCP + E + C IPAP GY PF WP+SRD +AN P+ LTVEK
Sbjct: 116 LNFPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKK 175
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW++YE + F FPGGGT FP+GAD YID++ +I +K+G++RTA+DTGCGVAS+GAYL
Sbjct: 176 NQNWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYL 235
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRN++ MSFAPRD+HEAQVQFALERGVPA+IGVL +I++P+ +RAFD+AHCSRCLIPWG
Sbjct: 236 MSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWG 295
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWE 240
+G Y+IEVDRVLRPGGYW+LSGPPINW+ ++K W+R A LCW
Sbjct: 296 QYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWR 355
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDD-SRANFCKSSDADDVWYKKMEGCITPYPEV---- 295
K ++ ++AVWQK N C+ R R FC + + WY K+E C+TP PEV
Sbjct: 356 KLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSE 415
Query: 296 ----AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDS 350
AGG+L +PERL A+PPRI SGS+ G++ + + ++ KW++ V+ YKK ++ L ++
Sbjct: 416 IKEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAET 475
Query: 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS 410
GRYRN +DMNA GGFA+A+ +WVMNVVP A NTLGVIYERGLIG Y +WCEA S
Sbjct: 476 GRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMS 535
Query: 411 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM 470
TYPRTYD IHA +FSLYKD+C++EDILLEMDRILRP+G++IIRD++D + KVKKI M
Sbjct: 536 TYPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAM 595
Query: 471 RWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 506
+W+ ++ DHE+GPL EKIL VK+YW A SS
Sbjct: 596 QWEGRIGDHENGPLEREKILFLVKEYWTAPAPDQSS 631
|
|
| TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
Identities = 288/509 (56%), Positives = 371/509 (72%)
Query: 1 MTFPRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKA 60
+ F RE + YR+RHCP EE L C IPAP GY TPF WP SRD +AN P+ LTVEK
Sbjct: 107 LKFSRERLEYRQRHCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKK 166
Query: 61 IQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
QNW++YE + F FPGGGT FP+GAD YID + +I + +G++RTA+DTGCGVAS+GAYL
Sbjct: 167 NQNWVRYENDRFWFPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYL 226
Query: 121 WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180
SRN+ MSFAPRD+HEAQVQFALERGVPA+IG++ TI++PY SRAFD+AHCSRCLIPWG
Sbjct: 227 LSRNITTMSFAPRDTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWG 286
Query: 181 ANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWE 240
NDG Y++EVDRVLRPGGYW+LSGPPINW+ +K W+R A LCW+
Sbjct: 287 QNDGAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWK 346
Query: 241 KKSEKGEIAVWQKKVNDESCRARRDDSR-ANFCK-SSDADDVWYKKMEGCITPYPEV--- 295
K ++ ++A+WQK N C+ R+ + FC+ D D WY KM+ C+TP PEV
Sbjct: 347 KVVQRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDA 406
Query: 296 ------AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKIN-RLL 348
AGG+++ +P RL AIPPR++ G++ ++ E++ E++ WK+ V+ YKK++ +L
Sbjct: 407 EDLKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLG 466
Query: 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA 408
++GRYRN++DMNA GGFAAA+ +WVMNVVP A NTLGVIYERGLIG Y +WCEA
Sbjct: 467 ETGRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEA 526
Query: 409 FSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 468
STYPRTYD IHA +F+LY+ +C E+ILLEMDRILRP G +IIRD+VD +IKVK++
Sbjct: 527 MSTYPRTYDFIHADSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTK 586
Query: 469 GMRWDTKMVDHEDGPLVPEKILVAVKQYW 497
G+ W+ ++ DHE GP EKI AVKQYW
Sbjct: 587 GLEWEGRIADHEKGPHEREKIYYAVKQYW 615
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
Identities = 257/486 (52%), Positives = 327/486 (67%)
Query: 11 RERHCPP-EEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEG 69
RERHCP +EK CL+P P GY TPFPWP+SR Y + N P+K L K QNW++ EG
Sbjct: 121 RERHCPDIAQEKFRCLVPKPTGYKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEG 180
Query: 70 NVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMS 129
+ F FPGGGT FP G Y+D + SV+P+ +G++RT LD GCGVAS+GA+L + ++ MS
Sbjct: 181 DRFVFPGGGTSFPGGVKDYVDVILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMS 240
Query: 130 FAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIE 189
APRD HEAQVQFALERG+PA++GVL T K+PY SR+FDM HCSRCL+ W + DG Y++E
Sbjct: 241 IAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLME 300
Query: 190 VDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKSEKGEIA 249
VDRVLRP GYWVLSGPP+ + +K +R LCWEK +E +
Sbjct: 301 VDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVV 360
Query: 250 VWQKKVNDESCRARRDDSR-ANFCKSSDADDVWYKKMEGCITPYPEVAGGE---LKAFPE 305
+W+K N CR R + C SSD D WYK+ME CITP P+V LK +PE
Sbjct: 361 IWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDTNKTVLKNWPE 420
Query: 306 RLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG 365
RL +P R+ +GSI G + ++ D+N W++ V Y + L +G+YRN++DMNAG GG
Sbjct: 421 RLNHVP-RMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKFLSNGKYRNVIDMNAGLGG 479
Query: 366 FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLF 425
FAAA+ +WVMNVVP NTLGV+Y+RGLIG Y +WCEA STYPRTYDLIHA+G+F
Sbjct: 480 FAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVF 539
Query: 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLV 485
SLY DKC+I DILLEM RILRPEGA+IIRD D ++KVK I MRW+ M ++
Sbjct: 540 SLYLDKCDIVDILLEMQRILRPEGAVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFD 599
Query: 486 PEKILV 491
IL+
Sbjct: 600 HGTILI 605
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
Identities = 239/507 (47%), Positives = 332/507 (65%)
Query: 8 MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQY 67
+++ ERHCPP EK CLIP P GY P WPKSR+ Y N PY + +K+ Q+W++
Sbjct: 103 LSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKK 162
Query: 68 EGNVFRFPGGGTQFPQGADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRNVI 126
EG+ F FPGGGT FP+G Y+D + +IP +K+GTVRTA+DTGCGVASWG L R ++
Sbjct: 163 EGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGIL 222
Query: 127 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRY 186
++S APRD+HEAQVQFALERG+PA++G++ T ++P+ S AFDMAHCSRCLIPW G Y
Sbjct: 223 SLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIY 282
Query: 187 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKSEKG 246
++E+ R++RPGG+WVLSGPP+N+ ++ W +C++K ++K
Sbjct: 283 LLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKD 342
Query: 247 EIAVWQKKVNDESCR---ARRDDSRANFCKSS-DADDVWYKKMEGCIT-PYPEV--AG-G 298
+IAVWQK ++D+SC A+ ++ C S + D WY + C+ P P+V +G G
Sbjct: 343 DIAVWQK-LSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKVKKSGLG 401
Query: 299 ELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMD 358
+ +PERL+ P RI G + G SA S + D KWK V YKK+ L + + RN+MD
Sbjct: 402 SIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALGTDKIRNVMD 459
Query: 359 MNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDL 418
MN +GGF+AA+ +WVMNVV + + N+L V+++RGLIG YHDWCEAFSTYPRTYDL
Sbjct: 460 MNTVYGGFSAALIEDPIWVMNVVSSYS-ANSLPVVFDRGLIGTYHDWCEAFSTYPRTYDL 518
Query: 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478
+H LF+L +C ++ ILLEMDRILRP G +IIR+ + + + G+RW + +
Sbjct: 519 LHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLAKGIRWSCRREE 578
Query: 479 HEDGPLVPEKILVAVKQYWVASGNSTS 505
E + EKILV K+ W +S N TS
Sbjct: 579 TEYA-VKSEKILVCQKKLWFSS-NQTS 603
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 228/508 (44%), Positives = 321/508 (63%)
Query: 8 MNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQY 67
+ + ERHCPP ++ CL+P P GY P WPKS+D Y N PY + +K+ QNW++
Sbjct: 97 LTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRK 156
Query: 68 EGNVFRFPGGGTQFPQGADKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRNVI 126
EG F FPGGGT FP G Y+D + +IP +K+GT+RTA+DTGCGVASWG L R ++
Sbjct: 157 EGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGIL 216
Query: 127 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRY 186
+S APRD+HEAQVQFALERG+PA++G++ T ++P+ S +FDMAHCSRCLIPW G Y
Sbjct: 217 TVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVY 276
Query: 187 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKSEKG 246
++EV R+LRPGG+WVLSGPP+N++ +K W + +C++ ++K
Sbjct: 277 LLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKD 336
Query: 247 EIAVWQKKVNDESC--RARRD-DSRANFCKSS-DADDVWYKKMEGCIT-PYPEVAGGELK 301
+IAVWQK D C + D D+ C S + D WY + C+ P P++ +L+
Sbjct: 337 DIAVWQKSP-DNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKLKKTDLE 395
Query: 302 A---FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMD 358
+ +PERL+ P RIS +PG + ++ D +KWK YKK+ + S + RN+MD
Sbjct: 396 STPKWPERLHTTPERISD--VPGGNGNVFKHDDSKWKTRAKHYKKLLPAIGSDKIRNVMD 453
Query: 359 MNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDL 418
MN +GG AAA+ + LWVMNVV + A NTL V+++RGLIG YHDWCEAFSTYPRTYDL
Sbjct: 454 MNTAYGGLAAALVNDPLWVMNVVSSYA-ANTLPVVFDRGLIGTYHDWCEAFSTYPRTYDL 512
Query: 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478
+H GLF+ +C+++ ++LEMDRILRP G IIR+ + + +RW +
Sbjct: 513 LHVDGLFTSESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQ 572
Query: 479 HEDGPLVPEKILVAVKQYWVASGNSTSS 506
E EK+L+ K+ W +S S+ +
Sbjct: 573 TESAS-ANEKLLICQKKLWYSSNASSET 599
|
|
| TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 237/512 (46%), Positives = 315/512 (61%)
Query: 5 RESMNYRERHCP-PEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQN 63
RE YRERHCP PEE L CLIP P GY P PWP+S + +AN PY + K Q
Sbjct: 105 REMNFYRERHCPLPEETPL-CLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQG 163
Query: 64 WIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR 123
W++ EG F FPGGGT FP GA +YI++LA IP+ GT+RTALD GCGVAS+G L S+
Sbjct: 164 WMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQ 223
Query: 124 NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND 183
++A+SFAPRDSH++Q+QFALERGVPA + +LGT ++P+ + +FD+ HCSRCLIP+ A +
Sbjct: 224 GILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYN 283
Query: 184 GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKS 243
Y IEVDR+LRPGGY V+SGPP+ W K W A LC+E +
Sbjct: 284 ATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCYELIA 332
Query: 244 EKGEIAVWQKKVNDESCRARRDDSRANFCKSS-DADDVWYKKMEGCITPYPEVAG----G 298
G +W+K V D SC +++ C S D WY K++ C+T V G G
Sbjct: 333 VDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALG 391
Query: 299 ELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYK-KINRLLDSGRYRNIM 357
+ +PERL +P R + + ++ D+ +W + V Y+ +N L S RN+M
Sbjct: 392 TISKWPERLTKVPSR---AIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVM 448
Query: 358 DMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYD 417
DMNA FGGFAA + S +WVMNV+P TL VIY+RGLIG+YHDWCE FSTYPRTYD
Sbjct: 449 DMNAFFGGFAATLASDPVWVMNVIPARKPL-TLDVIYDRGLIGVYHDWCEPFSTYPRTYD 507
Query: 418 LIHAHGLFSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMR 471
IH G+ SL K +C++ D+++EMDRILRPEG ++IRD + + KV ++ +R
Sbjct: 508 FIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVR 567
Query: 472 WDTKMVDHEDGPLVPEKILVAVKQYWVASGNS 503
W + + + E EKIL+A K W NS
Sbjct: 568 WSSSIHEKEPESHGREKILIATKSLWKLPSNS 599
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q94EJ6 | PMTE_ARATH | 2, ., 1, ., 1, ., - | 0.7224 | 0.9841 | 0.8019 | no | no |
| B9DFI7 | PMT2_ARATH | 2, ., 1, ., 1, ., - | 0.8352 | 0.9960 | 0.8181 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_VIII1310 | hypothetical protein (615 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 506 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-05 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 864 bits (2235), Expect = 0.0
Identities = 313/499 (62%), Positives = 375/499 (75%), Gaps = 17/499 (3%)
Query: 4 PRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQN 63
RE M +RERHCPP EEKL CL+P P GY TP PWPKSRD V YAN P+ L EK QN
Sbjct: 17 SRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQN 76
Query: 64 WIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKN--GTVRTALDTGCGVASWGAYLW 121
W++ EG+ FRFPGGGTQFP GAD YID LA +IP G VRTALD GCGVAS+GAYL
Sbjct: 77 WVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRTALDVGCGVASFGAYLL 136
Query: 122 SRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181
SR+V+ MSFAP+D HEAQVQFALERGVPA++GVLGT ++PY SR+FDMAHCSRCLIPW A
Sbjct: 137 SRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMAHCSRCLIPWHA 196
Query: 182 NDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241
NDG ++EVDRVLRPGGY+VLSGPP+ R +E+LQEE + +E +A LCW+
Sbjct: 197 NDGILLLEVDRVLRPGGYFVLSGPPVY--------ARDEEDLQEEWKAMEALAKSLCWKL 248
Query: 242 KSEKGEIAVWQKKVNDESCRARRDDSRANFCKSS-DADDVWYKKMEGCITPYPEV----A 296
++KG+IA+WQK VN+ R + CK S D D WY ME CITP PEV
Sbjct: 249 VAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVG 308
Query: 297 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDSGRYRN 355
GG L+ +PERL A+PPR++SG I GVSAE+++ D+ WK+ V+ YK++ + L+D GR RN
Sbjct: 309 GGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLIDKGRVRN 368
Query: 356 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 415
+MDMNAGFGGFAAA+ +WVMNVVP +TL VIY+RGLIGIYHDWCE FSTYPRT
Sbjct: 369 VMDMNAGFGGFAAALIDDPVWVMNVVPV-DSPDTLPVIYDRGLIGIYHDWCEPFSTYPRT 427
Query: 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475
YDL+HA LFSLYK +CN+EDILLEMDRILRP GA+IIRD+VD + KVKKI MRW+ +
Sbjct: 428 YDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKAMRWEVR 487
Query: 476 MVDHEDGPLVPEKILVAVK 494
+ D EDGP PEKIL+A K
Sbjct: 488 ITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 107 LDTGCGVASWGAYL---WSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMPY 162
LD GCG L V + D + A +R V+G +P+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKF--VVGDAEDLPF 53
Query: 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGY 199
+FD+ S ++ + R + E+ RVL+PGG
Sbjct: 54 PDESFDVVVSS-LVLHHLPDPERALREIARVLKPGGK 89
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 506 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.94 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.88 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.74 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.69 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.66 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.65 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.64 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.62 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.61 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.57 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.56 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.51 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.5 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.5 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.49 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.47 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.47 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.47 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.47 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.46 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.45 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.44 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.44 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.43 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.43 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.43 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.42 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.42 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.41 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.41 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.4 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.39 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.39 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.39 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.39 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.39 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.38 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.38 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.37 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.37 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.36 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.35 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.35 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.35 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.35 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.35 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.34 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.34 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.34 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.34 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.33 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.33 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.33 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.32 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.31 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.31 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.31 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.31 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.31 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.31 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.3 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.29 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.29 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.29 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.28 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.28 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.28 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.28 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.27 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.27 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.27 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.27 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.27 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.26 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.26 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.26 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.26 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.25 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.25 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.22 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.22 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.22 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.21 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.21 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.21 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.21 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.21 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.21 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.2 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.2 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.2 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.2 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.2 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.2 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.19 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.19 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.18 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.18 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.17 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.17 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.17 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.17 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.16 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.16 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.16 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.16 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.14 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.14 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.14 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.14 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.13 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.13 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.12 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.12 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.11 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.11 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.11 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.11 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.11 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.11 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.1 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.1 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.09 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.09 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.08 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.07 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.07 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.06 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.06 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.06 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.06 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.05 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.05 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.04 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.04 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.03 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.03 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.02 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.02 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.02 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.02 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.01 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.0 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.0 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.0 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.0 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.0 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.0 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.99 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.99 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.98 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.98 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.98 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.97 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.97 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.97 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.96 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.96 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.94 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.94 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.92 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.92 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.92 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.92 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.91 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.91 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.91 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.9 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.9 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.89 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.89 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.88 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.87 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.87 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.87 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.87 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.86 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.86 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.85 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.84 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.84 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.84 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.84 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.83 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.83 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.83 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.82 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.82 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.81 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.81 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.81 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.8 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.8 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.8 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.8 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.8 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.8 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.8 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.77 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.77 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.77 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.76 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.76 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.75 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.75 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.74 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.74 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.73 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.73 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.73 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.71 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.71 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.71 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.71 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.69 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.69 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.67 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.67 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.66 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.66 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.65 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.65 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.65 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.64 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.63 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.62 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.61 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.6 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.6 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.59 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.56 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.55 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.54 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.54 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.53 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.52 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.52 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.52 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.51 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.51 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.5 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.5 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.48 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.48 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.48 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.45 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.44 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.43 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.43 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.42 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.42 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.41 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.41 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.4 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.4 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.39 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.39 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.38 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.38 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.37 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.36 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.36 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.35 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.35 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.35 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.34 | |
| PLN02366 | 308 | spermidine synthase | 98.32 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.32 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.32 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.31 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.3 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.29 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.29 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.29 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.29 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.28 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.28 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.27 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.26 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.25 | |
| PLN02366 | 308 | spermidine synthase | 98.23 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.22 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.21 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.2 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.19 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.18 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.17 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.17 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.14 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.13 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.12 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.11 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.11 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.09 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.08 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.07 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.07 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.05 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.05 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.04 | |
| PLN02476 | 278 | O-methyltransferase | 98.04 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.99 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.98 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.98 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.97 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.97 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.96 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.96 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.96 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.94 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.94 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.94 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.93 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.93 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.93 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.93 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.92 | |
| PLN02476 | 278 | O-methyltransferase | 97.92 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.91 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.9 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.89 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.88 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.85 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.84 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.82 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.82 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.82 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.81 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.81 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.8 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.77 | |
| PLN02823 | 336 | spermine synthase | 97.77 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.76 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.75 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.74 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.73 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.72 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.7 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.69 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.68 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.65 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.64 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.62 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.62 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.62 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.61 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.59 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.57 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.57 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.56 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.54 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.53 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.53 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.52 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.51 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.51 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.51 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.5 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.48 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.47 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.47 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.46 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.43 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.43 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.42 | |
| PLN02823 | 336 | spermine synthase | 97.38 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.36 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.35 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.35 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.35 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.29 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.28 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.26 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.25 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.23 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.22 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.2 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.2 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.19 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.18 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.17 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.16 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.15 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.1 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.1 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.09 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.09 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.08 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.07 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.06 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.06 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.01 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.99 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.99 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.98 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.97 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.97 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 96.97 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.96 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.96 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.95 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.91 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.84 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.83 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.83 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.81 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.8 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 96.8 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.77 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.72 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.71 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.66 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.64 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.6 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.5 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.49 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.38 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.37 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.35 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.3 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.27 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.2 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.2 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.19 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.18 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.16 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.16 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.1 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.09 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.07 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.07 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.06 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.05 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.97 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.97 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.89 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 95.87 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.66 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.64 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.64 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.6 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.56 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.51 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.48 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 95.47 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.46 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.43 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.43 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.4 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.36 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.35 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.33 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.3 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.2 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.06 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.05 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.98 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.74 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.63 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.62 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.6 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.53 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.35 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.25 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.15 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.12 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.08 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.98 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 93.98 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.82 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.8 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 93.7 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.58 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 93.57 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.51 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.51 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 93.45 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.45 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 93.28 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.26 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 93.23 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.18 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.18 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.68 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.62 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.62 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.57 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 92.51 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 92.45 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.43 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.42 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-127 Score=978.22 Aligned_cols=481 Identities=64% Similarity=1.176 Sum_probs=463.9
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChh
Q 010599 4 PRESMNYRERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQ 83 (506)
Q Consensus 4 ~~~~~~~~~~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~ 83 (506)
++++|+|||||||+.+++.+|++|+|+||+.|++||+|+|++||+|+||+.++.+|+.|+|+..+++++.|||+|++|.+
T Consensus 17 ~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~ 96 (506)
T PF03141_consen 17 SRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPH 96 (506)
T ss_pred CcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCC--CCCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 84 GADKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
|+.+|++.|.++++. ..+..+++||||||+|+|+++|.+++|+++.+++.+.+++++++|.+||+++.+.+....+||
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLP 176 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLP 176 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcccccc
Confidence 999999999999987 667788999999999999999999999999999999999999999999999999988899999
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceee
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~ 241 (506)
|++++||+|||+.|+++|.++...+|-|+.|+|||||||++++|+.+ .++.++...+++.|+++++++||+.
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~ 248 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKK 248 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999985 3556778899999999999999999
Q ss_pred ccccCceEEEEecCCCchhhh-ccCCCCCCCCC-CCCCCchhhccCcccccCCcc----cCCCCCcCCccccccCCCCcc
Q 010599 242 KSEKGEIAVWQKKVNDESCRA-RRDDSRANFCK-SSDADDVWYKKMEGCITPYPE----VAGGELKAFPERLYAIPPRIS 315 (506)
Q Consensus 242 ~~~~~~~~i~~kp~~~~~cy~-~~~~~~~~~c~-~~~~~~~wy~~l~~c~~~~~~----~~~~~~~~~p~rl~~~p~~~~ 315 (506)
++++++++|||||.+| +||. +...+.|++|. ++|+|++||++|++||+++|+ .+++.+++||+||+++|+|+.
T Consensus 249 va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~ 327 (506)
T PF03141_consen 249 VAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLS 327 (506)
T ss_pred heeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhh
Confidence 9999999999999987 9999 55569999999 899999999999999999994 578888999999999999999
Q ss_pred CCCCCCCChhhhhhhhhhhHHHHHHHHHHhh-hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH
Q 010599 316 SGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY 394 (506)
Q Consensus 316 ~~~~~~~~~~~f~~~~~~W~~~v~~y~~~~~-~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~ 394 (506)
.+++.|.+.|.|.+|+++|+++|.+|++++. .++++++||||||++|+|||||+|.+.+||||||||++. +++|.+++
T Consensus 328 ~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vIy 406 (506)
T PF03141_consen 328 SGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVIY 406 (506)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCC-CCcchhhh
Confidence 9999999999999999999999999999887 899999999999999999999999999999999999965 59999999
Q ss_pred hcCccceeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceE
Q 010599 395 ERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 395 ~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~ 474 (506)
+|||+|+||+|||+|+|||+|||||||+++|+.+.++|+++++|.||||||||||++||||..++++++++++++|+|++
T Consensus 407 dRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 407 DRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEV 486 (506)
T ss_pred hcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCeEEEEEEe
Q 010599 475 KMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k 494 (506)
.++++|+|+.++|++|+|+|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 99999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=239.07 Aligned_cols=350 Identities=14% Similarity=0.136 Sum_probs=194.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc--cCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~--~lp~~~~ 165 (506)
..+.+.++.. ++.+|||||||+|.++..|++. .++++|+++.++..+.. .......+.+.+.|.. .++++++
T Consensus 27 ~~il~~l~~~--~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPY--EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCcc--CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCC
Confidence 3455555432 3458999999999999999876 48899998876644321 1111234566667764 5678889
Q ss_pred CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeeccc
Q 010599 166 AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSE 244 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~ 244 (506)
+||+|+|+.+++|+.++. ..+++++.|+|||||++++............... .....+. ...+..+...-.+.....
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~-~~~~~~~-~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN-NPTHYRE-PRFYTKVFKECHTRDEDG 180 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC-CCCeecC-hHHHHHHHHHheeccCCC
Confidence 999999999998875433 6899999999999999999753321110000000 0000000 112222222222222211
Q ss_pred c-Cce-EEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccCCCCCcCCccccccCCCCccCCCCCCC
Q 010599 245 K-GEI-AVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIPGV 322 (506)
Q Consensus 245 ~-~~~-~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~p~rl~~~p~~~~~~~~~~~ 322 (506)
. ..+ ...-++. .-|..++.+ |...+..= . .+.......+-+.+.. ++. +..|+
T Consensus 181 ~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~-~---~~~~~~~~~~~~~~~~----~~y-~~~~i 235 (475)
T PLN02336 181 NSFELSLVGCKCI---GAYVKNKKN-------------QNQICWLW-Q---KVSSTNDKGFQRFLDN----VQY-KSSGI 235 (475)
T ss_pred CEEEEEEEEeech---hhhhhccCC-------------cceEEEEE-E---eecCCcchhHHHHhhh----hcc-ccccH
Confidence 1 111 1112222 122211111 21111000 0 0001111111111211 110 00111
Q ss_pred -ChhhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--cc
Q 010599 323 -SAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LI 399 (506)
Q Consensus 323 -~~~~f~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~ 399 (506)
..+.|-...-.+...+..-..++..+......+|||+|||+|.++..|++.. ..+|+++|.|++|+..|.++. ..
T Consensus 236 ~~~~~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~ 313 (475)
T PLN02336 236 LRYERVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK 313 (475)
T ss_pred HHHHHHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC
Confidence 1122222222333334333444444434456789999999999998888743 258999999999999997763 21
Q ss_pred ceeccccccC---CCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-------------------
Q 010599 400 GIYHDWCEAF---STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------- 457 (506)
Q Consensus 400 ~~~~~~~~~~---~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------- 457 (506)
..+...+.++ +..+++||+|+|..+|.|. .+.+.+|.|+.|+|||||.++|.|..
T Consensus 314 ~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~ 390 (475)
T PLN02336 314 CSVEFEVADCTKKTYPDNSFDVIYSRDTILHI---QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGY 390 (475)
T ss_pred CceEEEEcCcccCCCCCCCEEEEEECCccccc---CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCC
Confidence 1111112222 2223789999999998855 47789999999999999999997521
Q ss_pred --hhHHHHHHHHhcCCceEE
Q 010599 458 --DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 458 --~~~~~~~~~~~~~~w~~~ 475 (506)
.....+.+++.+.+|++.
T Consensus 391 ~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 391 DLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred CCCCHHHHHHHHHHCCCeee
Confidence 134556677778888755
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-23 Score=214.86 Aligned_cols=160 Identities=16% Similarity=0.304 Sum_probs=127.4
Q ss_pred hhhhhhhhHHHHHHHHHHhh-hc----CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccce
Q 010599 327 YQEDSNKWKKHVNAYKKINR-LL----DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI 401 (506)
Q Consensus 327 f~~~~~~W~~~v~~y~~~~~-~i----~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~ 401 (506)
|......+.+.+.+|...+. .+ ..+.+|++||+|||+|+||++|.++++.+|.+.+-|.++..+++|.|||+.+.
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~ 166 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAM 166 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchh
Confidence 44444555667777754333 23 55889999999999999999999999999999999999999999999998665
Q ss_pred eccc-cccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC----------hhhHHHHHHHHhcC
Q 010599 402 YHDW-CEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE----------VDEIIKVKKIVGGM 470 (506)
Q Consensus 402 ~~~~-~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~----------~~~~~~~~~~~~~~ 470 (506)
+... ..+||+++++||+|||+..+..+.... ..+|.|++|||||||+++++-+ ...+++|++++++|
T Consensus 167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~l 244 (506)
T PF03141_consen 167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSL 244 (506)
T ss_pred hhhhccccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHH
Confidence 5333 368888889999999977777544333 3599999999999999999643 34789999999999
Q ss_pred CceEEEeecCCCCCCCeEEEEEEecc
Q 010599 471 RWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 471 ~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
||+...... .+.|.||+.
T Consensus 245 CW~~va~~~--------~~aIwqKp~ 262 (506)
T PF03141_consen 245 CWKKVAEKG--------DTAIWQKPT 262 (506)
T ss_pred HHHHheeeC--------CEEEEeccC
Confidence 999665322 289999975
|
; GO: 0008168 methyltransferase activity |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=165.13 Aligned_cols=163 Identities=20% Similarity=0.335 Sum_probs=121.2
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChhhHHHHHH
Q 010599 11 RERHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYID 90 (506)
Q Consensus 11 ~~~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~ 90 (506)
+--+|++ .||||.+++||.++++....+ +..+++..++..+++.|++ .++ |..-.+...+
T Consensus 17 ~~~~C~~----~h~fd~a~~Gy~~ll~~~~~~-----~~~~~d~~~~~~ar~~fl~--~g~---------y~~l~~~i~~ 76 (272)
T PRK11088 17 NSWICPQ----NHQFDCAKEGYVNLLPVQHKR-----SKDPGDNKEMMQARRAFLD--AGH---------YQPLRDAVAN 76 (272)
T ss_pred CEEEcCC----CCCCccccCceEEeccccccC-----CCCCCcCHHHHHHHHHHHH--CCC---------hHHHHHHHHH
Confidence 3468875 999999999999999866555 4567888999999988876 222 3233344444
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
.+.+.++ ....+|||+|||+|.++..|++. .++++|+|+ .+++.|.++...+.+.+++...+|++
T Consensus 77 ~l~~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~-----~~l~~A~~~~~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 77 LLAERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK-----VAIKYAAKRYPQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHHhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH-----HHHHHHHHhCCCCeEEEeecccCCCc
Confidence 4555443 23357999999999999988764 246676655 55566666666678888899999999
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
+++||+|++.++. ..++|+.|+|||||+|++..|...+
T Consensus 149 ~~sfD~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 149 DQSLDAIIRIYAP--------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred CCceeEEEEecCC--------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999999986531 2468999999999999999876643
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-17 Score=155.15 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=86.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceeccccccCCCCCCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~~~~~~~~p~s~D~v~~~~~~ 425 (506)
+..+|||+|||||-+|..+++... ...|+++|.|++||++|++|-. +..++.-+|.+|+.++|||+|.++..|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 567899999999999999988643 5799999999999999999953 223444568899777999999999999
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
. +..+++.+|+||.|||||||.+++-|.
T Consensus 130 r---nv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 130 R---NVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred h---cCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9 666999999999999999999999654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-16 Score=150.81 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=89.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+.+.+... ++.+|||||||||.++..+++. .++++|+|+.|+..+..+........+.+.++|++.|||+++
T Consensus 41 ~~~i~~~~~~--~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLGIK--PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhCCC--CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 3444444333 5669999999999999999886 489999998887655544443222237889999999999999
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|.+++.+.+ .++...+|+|++|||||||.+++..
T Consensus 119 sFD~vt~~fglrn-v~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 119 SFDAVTISFGLRN-VTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred ccCEEEeeehhhc-CCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 9999999999966 5678999999999999999888853
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=153.71 Aligned_cols=297 Identities=13% Similarity=0.093 Sum_probs=160.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
..+|||+|||+|.++..++.. .++++|+|+..+..+..+ +...++ .+.+...|... +++.++||+|+|+..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N-~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSN-AIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHH-HHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 358999999999999888753 589999988766554433 333343 34555555432 2345689999997543
Q ss_pred cccCC---------------------Ch----HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHH
Q 010599 177 IPWGA---------------------ND----GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIE 231 (506)
Q Consensus 177 ~~~~~---------------------~~----~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (506)
..... +. ..++.++.++|+|||.+++..... ..+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------------q~~~v~ 278 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------------QEEAVT 278 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------------hHHHHH
Confidence 22110 00 246778889999999999875322 122344
Q ss_pred HHHHhcceeeccccCceEEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccC-CCCCcCCccccccC
Q 010599 232 EIANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVA-GGELKAFPERLYAI 310 (506)
Q Consensus 232 ~l~~~~~w~~~~~~~~~~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~-~~~~~~~p~rl~~~ 310 (506)
.+....+|.. +.+ .+..+.. ..+... ...|+.+.-... |-.+
T Consensus 279 ~~~~~~g~~~------~~~-~~D~~g~----------~R~v~~----------~~~~~~rs~~rr~g~~~---------- 321 (506)
T PRK01544 279 QIFLDHGYNI------ESV-YKDLQGH----------SRVILI----------SPINLNRSYARRIGKSL---------- 321 (506)
T ss_pred HHHHhcCCCc------eEE-EecCCCC----------ceEEEe----------ccccCCcceeccCCCCC----------
Confidence 4433333422 112 2333210 000000 001111100000 0000
Q ss_pred CCCccCCCCCCCChhhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH
Q 010599 311 PPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL 390 (506)
Q Consensus 311 p~~~~~~~~~~~~~~~f~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l 390 (506)
+...-.--...|-...-...++. ......+||||||.|.|...++... ...|++++|....-+
T Consensus 322 ------------~~~q~~~~e~~~p~~~i~~eklf----~~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~ 384 (506)
T PRK01544 322 ------------SGVQQNLLDNELPKYLFSKEKLV----NEKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGV 384 (506)
T ss_pred ------------CHHHHHHHHhhhhhhCCCHHHhC----CCCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHH
Confidence 00000000000000000011121 2235679999999999999998753 236899999887655
Q ss_pred HHHH----hcCccceeccccccC----CCCC-CceeEEEEccccc-----cccCCCCHHHHHHHHhhcccCCcEEEE-Ee
Q 010599 391 GVIY----ERGLIGIYHDWCEAF----STYP-RTYDLIHAHGLFS-----LYKDKCNIEDILLEMDRILRPEGAIII-RD 455 (506)
Q Consensus 391 ~~~~----~rg~~~~~~~~~~~~----~~~p-~s~D~v~~~~~~~-----~~~~~~~~~~~l~e~~RvLrPgG~~ii-~d 455 (506)
..+. ++++ .++.-.+.++ ..++ +++|.||..+==. |.+.|---+..|.++.|+|||||.+.+ +|
T Consensus 385 ~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 385 ANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred HHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 5433 3344 2222333333 2245 8999999832222 222222235799999999999999998 56
Q ss_pred ChhhHHHHHHHHhc-CCceE
Q 010599 456 EVDEIIKVKKIVGG-MRWDT 474 (506)
Q Consensus 456 ~~~~~~~~~~~~~~-~~w~~ 474 (506)
..++.+.+...+.. ..|+.
T Consensus 464 ~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 464 IENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred CHHHHHHHHHHHHhCCCeEe
Confidence 66677776665444 34663
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-16 Score=152.10 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=76.5
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceecc
Q 010599 331 SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHD 404 (506)
Q Consensus 331 ~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~ 404 (506)
++.|++.+... +......+|||+|||||.++..|++.-.....|+++|.|++||++|.+|.. +.....
T Consensus 32 ~~~wr~~~~~~------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 32 DRRWRRKLIKL------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp -----SHHHHH------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHHhc------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 36787755442 223335589999999999999998754345689999999999999998731 222223
Q ss_pred ccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 405 WCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 405 ~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
-++++|+-+++||+|.++.+|. +.+++..+|.||.|||||||+++|-|-
T Consensus 106 da~~lp~~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 3466776569999999999988 556889999999999999999999664
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.7e-16 Score=126.35 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=73.4
Q ss_pred EeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc---eeccccccCCCCCCceeEEEEccccccccCCCC
Q 010599 357 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG---IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~---~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~ 433 (506)
||+|||+|.++..|++.+ ..+|+++|.+++|++.+.++.... ..+.-.+.+++.+++||+|++.++|++. .+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 899999999999999982 379999999999999999985422 2322245565555999999999999966 57
Q ss_pred HHHHHHHHhhcccCCcEEEE
Q 010599 434 IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii 453 (506)
...+|.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 88999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=146.83 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||||.++..++++ .++++|+|+.|+..+..+.......++.+.++|++++|+++++||+|+|++.+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 4559999999999999998875 38899999988877666655544447889999999999999999999999998
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+. .++....++|+.|+|||||.+++..
T Consensus 127 rn-~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 127 RN-FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GG--SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hh-hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 66 4678999999999999999998853
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=140.18 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=78.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cceeccccccCCCCCCceeEEEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~~~~~~~~~~~~~p~s~D~v~~ 421 (506)
.+..+|||+|||||.++..|++......+|+++|.|++|++.|.+|.. +.....-.+.+|.-+++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 345689999999999998887641112489999999999999987631 11222223455544489999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.++++. .++..+|.|+.|+|||||+++|.|
T Consensus 152 ~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNV---VDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccC---CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 9998844 478899999999999999999976
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-15 Score=121.33 Aligned_cols=90 Identities=26% Similarity=0.424 Sum_probs=71.2
Q ss_pred EEECCCCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010599 107 LDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~-~--v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
||+|||+|.++..|+++ + ++++|+++ .+++.++++.. ...+...+...+|+++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE-----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H-----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH-----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999999988 4 67777755 44455554432 2448888999999999999999999999776 7
Q ss_pred ChHHHHHHHHHhcCCCeEEEE
Q 010599 182 NDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 182 ~~~~~l~e~~rvLkPGG~li~ 202 (506)
+...+++|+.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 779999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-15 Score=138.37 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=107.5
Q ss_pred cCCCCcchhhHH-hhcchhhccCCeEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--
Q 010599 48 ANAPYKSLTVEK-AIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-- 124 (506)
Q Consensus 48 ~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~-- 124 (506)
.++++.+.+... -.+.||+.++++-... .+......|+......- ..-.+.+|||||||.|.++..|++.|
T Consensus 10 ~~id~~e~~~F~~la~~wwd~~g~f~~LH----~~N~~rl~~i~~~~~~~--~~l~g~~vLDvGCGgG~Lse~mAr~Ga~ 83 (243)
T COG2227 10 QNVDYKELDKFEALASRWWDPEGEFKPLH----KINPLRLDYIREVARLR--FDLPGLRVLDVGCGGGILSEPLARLGAS 83 (243)
T ss_pred ccCCHHHHHHHHHHHhhhcCCCCceeeee----eeccchhhhhhhhhhcc--cCCCCCeEEEecCCccHhhHHHHHCCCe
Confidence 344454444333 3667998555433211 11122233332222210 01245689999999999999999985
Q ss_pred cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 125 VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 125 v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+++|+++..+..+. ..|.+.++.+.+....++++....++||+|+|..+++|. +++..+++.+.+++||||.+++++
T Consensus 84 VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv-~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 84 VTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV-PDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred eEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc-CCHHHHHHHHHHHcCCCcEEEEec
Confidence 888888887775443 456677777778777788887777899999999999995 678999999999999999999998
Q ss_pred CCCCc
Q 010599 205 PPINW 209 (506)
Q Consensus 205 p~~~~ 209 (506)
..-++
T Consensus 162 inrt~ 166 (243)
T COG2227 162 INRTL 166 (243)
T ss_pred cccCH
Confidence 76543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=135.83 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHH--H-cCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFAL--E-RGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~--~-~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|+++ .++++|+|+.|+..+..+... . ...++.+.+.|+..+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 3458999999999999888764 489999998877665433221 1 1235678888999999999999999999
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++++++ +++..+++|+.|+|||||++++...
T Consensus 153 ~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 153 YGLRNV-VDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 998764 6789999999999999999998753
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=140.27 Aligned_cols=123 Identities=20% Similarity=0.378 Sum_probs=95.5
Q ss_pred ChhhHHHHHHHHHhhCCCC---CCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEE
Q 010599 81 FPQGADKYIDQLASVIPIK---NGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVI 152 (506)
Q Consensus 81 f~~~~~~~~~~i~~~l~~~---~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~ 152 (506)
+......+++.+.+.+.+. ...+.+|||||||+|.++..|+++ .++++|+++.++..+.. .+...+. .+.+
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~ 172 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSF 172 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEE
Confidence 4444456667777776541 134568999999999999999875 58899998876654433 3333343 4778
Q ss_pred EEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 153 GVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 153 ~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+.|...+|+++++||+|++..+++|+ .+...+++++.|+|||||.|++.+.
T Consensus 173 ~~~D~~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 173 QVADALNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEcCcccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888999999999999999999999886 5678999999999999999999763
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=124.53 Aligned_cols=153 Identities=12% Similarity=0.165 Sum_probs=107.8
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc
Q 010599 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~ 407 (506)
..|++++-.-..+...+.. ..+|||+|||+|.++..++... ....|+++|.+++|++.|.++ ++. .++..+.
T Consensus 27 ~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEec
Confidence 4788887655555555543 4679999999999988887521 236899999999999877664 331 1222233
Q ss_pred cCCCC--CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEE--eecCCCC
Q 010599 408 AFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM--VDHEDGP 483 (506)
Q Consensus 408 ~~~~~--p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~--~~~~~~~ 483 (506)
+...+ +++||+|.+.. ..+++.++.++.|+|||||.+++-+.......+.++.+.++|.+.. .-+..|-
T Consensus 103 d~~~~~~~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 103 RAEEFGQEEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGL 175 (187)
T ss_pred cHhhCCCCCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCC
Confidence 33322 47999999943 2367889999999999999999999888889999999999998552 2222333
Q ss_pred CCCeEEEEEEec
Q 010599 484 LVPEKILVAVKQ 495 (506)
Q Consensus 484 ~~~~~~l~~~k~ 495 (506)
..+--+.+.||+
T Consensus 176 ~~~~~~~~~~~~ 187 (187)
T PRK00107 176 DGERHLVIIRKK 187 (187)
T ss_pred CCcEEEEEEecC
Confidence 233445566664
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=136.65 Aligned_cols=125 Identities=14% Similarity=0.234 Sum_probs=92.0
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEE
Q 010599 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG 153 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~ 153 (506)
+...+..+-....+.+.+.+.+. ++.+|||||||+|..+..|+.. .++++|+++.++..+...... ...+.+.
T Consensus 29 g~~~~~~gg~~~~~~~l~~l~l~--~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~ 104 (263)
T PTZ00098 29 GEDYISSGGIEATTKILSDIELN--ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFE 104 (263)
T ss_pred CCCCCCCCchHHHHHHHHhCCCC--CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEE
Confidence 43444444444456666666544 3458999999999999888764 488888877655444332221 2346777
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 154 VLGTIKMPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..|+...|+++++||+|++..+++|+.. +...+++++.++|||||+|+++..
T Consensus 105 ~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 105 ANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7888888999999999999888888753 568999999999999999999864
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-13 Score=127.69 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=99.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceecccc---ccCCCCCCceeEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWC---EAFSTYPRTYDLIH 420 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~---~~~~~~p~s~D~v~ 420 (506)
.+......+|||+|||+|.++..|++.-....+|+++|.+++|++.+.++.- ...+...+ +.++..+++||+|+
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 119 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVT 119 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEE
Confidence 3443445689999999999999998742123589999999999998876521 11122222 23333338999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------------------------------------
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------------------ 458 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------------------ 458 (506)
+..++++ ..+...+|.|+.|+|||||++++.+...
T Consensus 120 ~~~~l~~---~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (231)
T TIGR02752 120 IGFGLRN---VPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDF 196 (231)
T ss_pred Eeccccc---CCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHc
Confidence 9888874 4467889999999999999999866321
Q ss_pred -hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 459 -EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 459 -~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
..+++++++++.+++...+..-.+ ....+.+++|
T Consensus 197 ~~~~~l~~~l~~aGf~~~~~~~~~~--g~~~~~~~~~ 231 (231)
T TIGR02752 197 PGMDELAEMFQEAGFKDVEVKSYTG--GVAAMHMGFK 231 (231)
T ss_pred CCHHHHHHHHHHcCCCeeEEEEccc--ceEEEEEEEC
Confidence 125678899999998554433321 2355666665
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-13 Score=134.88 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=83.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.+|||||||+|.++..|++.+ |+++|+++.++..+... +...+ ..+.+.+.++..+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 45689999999999999998874 88888888766554433 22222 246677788888888888999999999998
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+ .++..+++++.++|||||.+++++...
T Consensus 210 Hv-~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HV-ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hc-CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 85 568999999999999999999987654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=134.74 Aligned_cols=148 Identities=15% Similarity=0.201 Sum_probs=103.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHhh--hcCC---------------CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCc
Q 010599 325 ESYQEDSNKWKKHVNAYKKINR--LLDS---------------GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK 387 (506)
Q Consensus 325 ~~f~~~~~~W~~~v~~y~~~~~--~i~~---------------~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~ 387 (506)
..|.+.++|-...+..|+.++. .+.+ .+..+|||+|||+|.++..|+... ..+|+++|.|+
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 4577777777777777766655 2333 344589999999999998887642 35899999999
Q ss_pred ccHHHHHhcCcc-ceeccccccC---CCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-----
Q 010599 388 NTLGVIYERGLI-GIYHDWCEAF---STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----- 458 (506)
Q Consensus 388 ~~l~~~~~rg~~-~~~~~~~~~~---~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----- 458 (506)
+|+..|.++... ..+...+.++ ++.+++||+|++..+|.|.. ..+...+|.++.|+|||||+|+|.|...
T Consensus 86 ~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~ 164 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCADKIEN 164 (263)
T ss_pred HHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccccccC
Confidence 999999987321 1122222333 22238999999987777542 2367889999999999999999986411
Q ss_pred -----------------hHHHHHHHHhcCCceEE
Q 010599 459 -----------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 459 -----------------~~~~~~~~~~~~~w~~~ 475 (506)
....+.++++..+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 165 WDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 22456666777777744
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=131.60 Aligned_cols=113 Identities=25% Similarity=0.394 Sum_probs=87.7
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
...+.+.+.++. ..+.+|||+|||+|.++..|++. .++++|+++.+ ++.++++.....+.+.|...+|+++
T Consensus 29 ~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~-----l~~a~~~~~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPM-----LAQARQKDAADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHH-----HHHHHhhCCCCCEEEcCcccCcCCC
Confidence 334455666643 23458999999999999999876 47888887644 4445554434456778888999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++||+|+++.++ +|..++..++.++.++|||||.++++++..
T Consensus 102 ~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 102 ATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999877 667888999999999999999999987554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-13 Score=130.52 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=80.5
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEcc
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~~~ 423 (506)
+..+......+|||+|||+|.++..|.+.+ ..|+++|.|++|++.+.++.. ......-.+.++..+++||+|.++.
T Consensus 35 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 35 LAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL 111 (251)
T ss_pred HHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc
Confidence 334444456789999999999999998765 589999999999999998853 1112111244444448999999988
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.+ ..++..+|.|+.|+|||||.++++.
T Consensus 112 ~l~~---~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 112 AVQW---CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhhh---cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 8763 3478899999999999999999975
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-13 Score=134.86 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=91.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceecccc---ccCCCCCCceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWC---EAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~---~~~~~~p~s~D~v~~~~~~ 425 (506)
..+|||+|||+|.++..|+..+ .+|+++|.+++|++.|+++. +...+...+ ++++..+++||+|.|..+|
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4589999999999999998865 58999999999999998762 111222223 4455444899999999999
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCceEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w~~~ 475 (506)
+| ..++..+|.++.|+|||||.++|.+... ..+++..++++.++++.
T Consensus 209 eH---v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 209 EH---VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred Hh---cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 94 4478899999999999999999975211 24678888888888865
Q ss_pred E
Q 010599 476 M 476 (506)
Q Consensus 476 ~ 476 (506)
.
T Consensus 286 ~ 286 (322)
T PLN02396 286 E 286 (322)
T ss_pred E
Confidence 3
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-11 Score=125.54 Aligned_cols=140 Identities=17% Similarity=0.107 Sum_probs=93.8
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc--ceecc-ccccCCCCC-Ccee
Q 010599 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHD-WCEAFSTYP-RTYD 417 (506)
Q Consensus 346 ~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~--~~~~~-~~~~~~~~p-~s~D 417 (506)
..+......+|||+|||+|.++..++++. ....|+++|.|+.|++.|.+. +.. ..+.. +...++..+ .+||
T Consensus 222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fD 300 (378)
T PRK15001 222 QHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFN 300 (378)
T ss_pred HhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEE
Confidence 33433334589999999999999998753 236899999999999988764 111 01111 122233344 6999
Q ss_pred EEEEccccccccCCC--CHHHHHHHHhhcccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010599 418 LIHAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~--~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
+|.|+--|+...... ....++.+..|+|||||.|+|.- ..++..+|++++... ..+. ...+.+++-++
T Consensus 301 lIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~----~~va----~~~kf~vl~a~ 372 (378)
T PRK15001 301 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNC----TTIA----TNNKFVVLKAV 372 (378)
T ss_pred EEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCc----eEEc----cCCCEEEEEEE
Confidence 999988876322111 23578999999999999999963 456777777765422 2322 22478888888
Q ss_pred e
Q 010599 494 K 494 (506)
Q Consensus 494 k 494 (506)
|
T Consensus 373 k 373 (378)
T PRK15001 373 K 373 (378)
T ss_pred e
Confidence 8
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-13 Score=126.55 Aligned_cols=119 Identities=13% Similarity=0.229 Sum_probs=86.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~D~v~~~~~~ 425 (506)
...+|||+|||+|.++..|++++ .+|+++|.|++|++.+.++ ++ ..++..+.++..+ +.+||+|.|+.+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecch
Confidence 34679999999999999999975 4899999999999977653 32 1122223444433 4789999999888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----------h---hHHHHHHHHhcCCceEEEe
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------D---EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------~---~~~~~~~~~~~~~w~~~~~ 477 (506)
+++. ..+...++.++.|+|||||++++.... + ..+++.+.+. +|++...
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 6543 346788999999999999996652211 1 3456777776 7886554
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=116.81 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=77.9
Q ss_pred CceEEeecCcccHHHHHHHh--CCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC---CCCCCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---STYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~--~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~---~~~p~s~D~v~~~~ 423 (506)
..+|||+|||+|.++.+|++ .+ .+|+++|.+++|++.|.++- ....++..+.++ ...+..||+|.+..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPG---ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 35799999999999999988 55 57999999999999988874 333333444556 33447899999988
Q ss_pred -ccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 424 -LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 -~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+.++.+..+...+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44434434556789999999999999999975
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-13 Score=125.30 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=93.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCe-----EEEEeecCCCcccHHHHHhcC----ccce--ecc---ccccCCCC
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLW-----VMNVVPTLADKNTLGVIYERG----LIGI--YHD---WCEAFSTY 412 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~-----~~~v~~~d~~~~~l~~~~~rg----~~~~--~~~---~~~~~~~~ 412 (506)
.+..+..-++|||+||||-.|..+.+.-.. ..+|+..|++++||.++.+|. +-.. +.. -+|++|+-
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 455666678999999999999888764222 268999999999999988885 2111 222 24678855
Q ss_pred CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhH-HHHHHHHhcCCceE
Q 010599 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWDT 474 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~-~~~~~~~~~~~w~~ 474 (506)
+++||....+..+. +..+++.+|.|++|||||||+|.+-+-.... +.|+.++.+--.++
T Consensus 175 d~s~D~yTiafGIR---N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIR---NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CCcceeEEEeccee---cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 59999999988888 6668899999999999999999997766544 45666655544443
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=131.41 Aligned_cols=139 Identities=11% Similarity=0.135 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--c--Cccceeccccc
Q 010599 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--R--GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--r--g~~~~~~~~~~ 407 (506)
..|+..+. |..++..+.....++|||+|||+|.++..|+..+. ..|+++|.|+.|+..+.. + +.....+....
T Consensus 102 ~e~~s~~~-~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 102 SEWRSDIK-WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred HHHHHHHH-HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 45655544 33344445445567899999999999988887653 369999999999875321 1 11111221122
Q ss_pred cCCCCC--CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC------------------------hhhHH
Q 010599 408 AFSTYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEII 461 (506)
Q Consensus 408 ~~~~~p--~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~ 461 (506)
.+..+| .+||+|+|.+++. |+.++..+|.|+.|+|||||.|+|.+. .....
T Consensus 179 ~ie~lp~~~~FD~V~s~gvL~---H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~ 255 (314)
T TIGR00452 179 GIEQLHELYAFDTVFSMGVLY---HRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVS 255 (314)
T ss_pred CHHHCCCCCCcCEEEEcchhh---ccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHH
Confidence 233333 6899999999998 456889999999999999999998531 01356
Q ss_pred HHHHHHhcCCceEEE
Q 010599 462 KVKKIVGGMRWDTKM 476 (506)
Q Consensus 462 ~~~~~~~~~~w~~~~ 476 (506)
.+...+++.+++...
T Consensus 256 ~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 256 ALKNWLEKVGFENFR 270 (314)
T ss_pred HHHHHHHHCCCeEEE
Confidence 778889999998653
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=126.47 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=74.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~ 432 (506)
..+|||+|||||.++..|++.. ..+|+++|.|++||+.|.++.. ..+..++.+|+.+++||+|.++.+++ +..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~lp~~d~sfD~v~~~~~l~---~~~ 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD--KVVGSFEALPFRDKSFDVVMSSFALH---ASD 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc--eEEechhhCCCCCCCEEEEEecChhh---ccC
Confidence 4589999999999999998863 2589999999999999998742 23333467776669999999998887 456
Q ss_pred CHHHHHHHHhhcccCCc
Q 010599 433 NIEDILLEMDRILRPEG 449 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG 449 (506)
+++.+|.||.|||||.+
T Consensus 125 d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CHHHHHHHHHHHhcCce
Confidence 88999999999999953
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-13 Score=130.65 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=81.9
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEc
Q 010599 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 422 (506)
Q Consensus 343 ~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~ 422 (506)
.++..+......+|||+|||+|.++..|++.. ....|+++|.|+.|++.|.++++--...+ .++++ .+++||+|+|+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~~~~~~~d-~~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERGVDARTGD-VRDWK-PKPDTDVVVSN 96 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcCCcEEEcC-hhhCC-CCCCceEEEEe
Confidence 44555555556789999999999999998752 23589999999999999998864222211 12332 23899999999
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+|++.. +...+|.++.|+|||||+++|.
T Consensus 97 ~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 97 AALQWVP---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhhhhCC---CHHHHHHHHHHhCCCCcEEEEE
Confidence 9998654 6788999999999999999995
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-13 Score=131.46 Aligned_cols=122 Identities=24% Similarity=0.419 Sum_probs=83.8
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHH----HcCC
Q 010599 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFAL----ERGV 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~~a~----~~~~ 148 (506)
|+.+...+..+....++.+.+.+.+.++ .+|||||||.|.++.+++++ ++.++.+ .+++.+.+.++ +.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCC
Confidence 6666666777778888899999876654 49999999999999999998 6444444 33455555544 3454
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEE
Q 010599 149 P--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 149 ~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~ 203 (506)
. +.+...|..+++. +||.|++..+++|+... ...+++++.++|||||.+++.
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3 6666677776654 89999999999997543 379999999999999999984
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=123.81 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=75.8
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..|+++ .|+++|+|+.++..+....+ ..+.. +.+.+.|...++++ ++||+|+|+.+++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKA-AENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL 108 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence 358999999999999999987 48899999877765544333 34443 56666777777664 579999999988665
Q ss_pred CC-ChHHHHHHHHHhcCCCeEEEEE
Q 010599 180 GA-NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 180 ~~-~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ +...+++++.++|||||++++.
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 2379999999999999996553
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=123.55 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=85.0
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHHcCC----CeEEEEeccccCCCCC
Q 010599 99 KNGTVRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 99 ~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~dl~~~~~~~a~~~~~----~~~~~~~d~~~lp~~~ 164 (506)
.++.+.++||++||||..+..+.+. +|+++||++.|+..+..+ +.++++ ...+..+|+++|||++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR-a~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR-AKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH-HhhcCCCcCCceEEEeCCcccCCCCC
Confidence 3456679999999999888887654 489999999888665543 333433 3678888999999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||+.++++.+..+ .++.+.|+|++|+|||||+|.+-.
T Consensus 176 ~s~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CcceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999988664 678999999999999999998653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-13 Score=120.52 Aligned_cols=95 Identities=27% Similarity=0.537 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
.+.+|||||||+|.++..|++. .++++|+++.++.. ........+....+.++++||+|+|+.+++|+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 4559999999999999999887 47888887755433 22333333344555678899999999999885
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 180 GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++..+|+++.++|||||+++++++..
T Consensus 92 -~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 92 -PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 468999999999999999999998754
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-12 Score=123.29 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=85.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+....+......+.+...|...+++++
T Consensus 35 ~~~l~~l~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQ--AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 4555666443 3459999999999999988764 47899998876655444433222224667778888888888
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++..++++ .++...+++++.++|+|||++++..+
T Consensus 113 ~~fD~V~~~~~l~~-~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRN-VPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEeccccc-CCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99999999988755 56678999999999999999998653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=133.26 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCCCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~~~p~s~D~v~~~~ 423 (506)
....+|||||||+|.++..|++.. ..+|+++|.++.|++.+.++ |+...+...+ +.+++.+++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 345689999999999999998852 35899999999999977664 3322122222 33444458999999988
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.|. .+...+|.|+.|+|||||+|+|.+
T Consensus 195 ~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHM---PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhcc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 88854 467889999999999999999954
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=122.32 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=76.1
Q ss_pred CEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010599 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
.+|||+|||+|.++..|++++ |+++|+++.++..+.. .+...++++...+.+....+++ ++||+|+|+.+++++..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQA 109 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCH
Confidence 489999999999999999874 8999999877755443 3445566666666676655654 57999999998877643
Q ss_pred C-hHHHHHHHHHhcCCCeEEEEE
Q 010599 182 N-DGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 182 ~-~~~~l~e~~rvLkPGG~li~~ 203 (506)
+ ...+++++.++|||||++++.
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEE
Confidence 2 378999999999999996654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=111.10 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=76.9
Q ss_pred CCEEEEECCCCChhHHHHhh--C--CcEEEecCccchHHHHHHHHHH-cCCCeEEEEecc-ccCCCCCCCeeEEEEcC-c
Q 010599 103 VRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGT-IKMPYASRAFDMAHCSR-C 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~--~--~v~~vdis~~dl~~~~~~~a~~-~~~~~~~~~~d~-~~lp~~~~sfDlV~~~~-~ 175 (506)
+.+|||||||+|.++..+++ . .++++|+++.++..+..+.... ...++.+...|. ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 45899999999999999998 4 4899999998776666555332 345678888888 33333 34699999998 4
Q ss_pred ccccC--CChHHHHHHHHHhcCCCeEEEEEc
Q 010599 176 LIPWG--ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~--~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++. ++...+++++.+.|+|||+|++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44333 234789999999999999999975
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=127.11 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=81.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+.. ..+.+|||||||+|.++..|+++ .++++|+|+.++ +.+++++ +.+.+.|...++ +++
T Consensus 19 ~~ll~~l~~--~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-----~~a~~~~--~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 19 YDLLARVGA--ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-----AAARERG--VDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHHhCCC--CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHhcC--CcEEEcChhhCC-CCC
Confidence 345555543 33458999999999999999875 478888876544 4445544 456667777664 567
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|+.+++| .+++..+++++.++|||||++++..+.
T Consensus 89 ~fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 89 DTDVVVSNAALQW-VPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CceEEEEehhhhh-CCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999865 567899999999999999999998653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-13 Score=121.92 Aligned_cols=97 Identities=21% Similarity=0.347 Sum_probs=76.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccC
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
....+|||+|||+|.++..|++.+. +++++|.++.|++. +......++ .+.....+++||+|+|..+|+|..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~-~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD-AQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE-CHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh-hhhhhccccchhhHhhHHHHhhcc-
Confidence 4466899999999999999988763 89999999999988 222222111 011122349999999999999666
Q ss_pred CCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 431 KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++..+|.+|.|+|||||+++|.+..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 6889999999999999999998765
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-12 Score=128.22 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=83.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHH-HHHcCCCeEEEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQF-ALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~-a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+...++. ..+.+|||||||+|.++..++..+ |+++|+|+.++....... ......++.+...++..+|+ ++
T Consensus 112 ~~l~~~l~~--l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSP--LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 445555532 235699999999999999998763 888998876664322211 11113357778888888988 78
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|+|..+++|. .++..+|+++.++|+|||.|++.+
T Consensus 189 ~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 189 AFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999885 678899999999999999999864
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=128.84 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=86.5
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEcccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D~v~~~~~~~~ 427 (506)
.+|||+|||+|.++.+|++.+ .+|+++|.|+.|++.+.++ ++ .+...+.++.. .+++||+|.+..+|++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 479999999999999999876 5899999999999977554 33 12222233332 3589999999998876
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEe---C------h-----hhHHHHHHHHhcCCceEEEe
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRD---E------V-----DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d---~------~-----~~~~~~~~~~~~~~w~~~~~ 477 (506)
+. ..++..++.+|.|+|||||++++.. . . -...+|++++.. |++...
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 53 4567889999999999999966631 1 0 145778888876 887654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-12 Score=120.50 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=84.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++..|++++ ..|+++|.|+.|++.+.++ ++. +...+.++.. ++.+||+|+++.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEEEEecccc
Confidence 4579999999999999999875 5899999999999977554 331 1111122222 347899999998887
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeC-----------h---hhHHHHHHHHhcCCceEEEee
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE-----------V---DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-----------~---~~~~~~~~~~~~~~w~~~~~~ 478 (506)
+.. ..+...++.++.|+|||||+++|.+. . -..++|.+++.. |++...+
T Consensus 106 ~~~-~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 106 FLQ-AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred cCC-HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 553 34667899999999999999655311 0 145678887764 8766544
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-12 Score=122.37 Aligned_cols=165 Identities=18% Similarity=0.311 Sum_probs=120.8
Q ss_pred hhhhhhhhhhHHHHH-H--H------HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh
Q 010599 325 ESYQEDSNKWKKHVN-A--Y------KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 395 (506)
Q Consensus 325 ~~f~~~~~~W~~~v~-~--y------~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~ 395 (506)
..|..-..++.+..- + | ..++.....+..+++||+|||||-++.+|.+. +-.++++|+|.|||+.|.+
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHh
Confidence 346666666665442 2 3 22333566777999999999999999999874 2579999999999999999
Q ss_pred cCccce-eccccccCC--CCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC-hh-------------
Q 010599 396 RGLIGI-YHDWCEAFS--TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VD------------- 458 (506)
Q Consensus 396 rg~~~~-~~~~~~~~~--~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~------------- 458 (506)
||+... ++.-...|. .-++-||+|.+..||..+. +++.++.-..+.|.|||.|+++-. .+
T Consensus 166 Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~Ry 242 (287)
T COG4976 166 KGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRY 242 (287)
T ss_pred ccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhh
Confidence 997321 211112233 2348999999999999766 678899999999999999999621 11
Q ss_pred --hHHHHHHHHhcCCceEEEee-----cCCCCCCCeEEEEEEec
Q 010599 459 --EIIKVKKIVGGMRWDTKMVD-----HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 459 --~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~~~~l~~~k~ 495 (506)
....++..+..-+.++..++ .+.|...+..+++++|+
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 34678899999999966332 23566678888999885
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=124.74 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||||||+|.++..|++. .++++|+|+.|+.. |.++. ...+.++..+|+++++||+|+++++++|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~-----a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~- 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM-----NLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHA- 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH-----HHhcc---ceEEechhhCCCCCCCEEEEEecChhhc-
Confidence 458999999999999999876 47888887766544 33332 2456788899999999999999999866
Q ss_pred CCChHHHHHHHHHhcCCCe
Q 010599 180 GANDGRYMIEVDRVLRPGG 198 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG 198 (506)
.+++..+++|+.|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 5678999999999999953
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-12 Score=115.46 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=100.0
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCC-C-CceeEEEEcc
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTY-P-RTYDLIHAHG 423 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~-p-~s~D~v~~~~ 423 (506)
.+....++++||+|||.|.|...|+.+ +-.++++|.|+..++.|++|- -...+.....++|.. | ++||||+++-
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 578888999999999999999999986 378999999999999999983 223444445666653 4 9999999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
++-++.+..++..++..+...|+|||.||+-+-.+ -.+.|.+++...-=++..++...++ ..|-.|+++
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 193 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNEDCLLAR 193 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCceEeee
Confidence 99888766778899999999999999999954321 3355555555554455444433333 456666665
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.6e-12 Score=117.18 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=79.7
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
+.++||+|||.|+.+.+|+++| |+++|+|+..+.. ..+.|.+.++++...+.|.....++ +.||+|++..+++++.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 4489999999999999999996 8899999876644 4567778889998888898777765 6899999988887766
Q ss_pred CCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 181 AND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 181 ~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+. ..+++.+...++|||++++.+
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 688999999999999998853
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-12 Score=123.55 Aligned_cols=109 Identities=19% Similarity=0.283 Sum_probs=81.9
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 89 ~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+.+...++. .++.+|||||||+|.++..+++. .++++|+++.++ +.++++...+.+...|...+. ++
T Consensus 20 ~~~ll~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-----~~a~~~~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 20 ARDLLARVPL--ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-----AEARSRLPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHHhhCCC--cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHhCCCCeEEECchhccC-CC
Confidence 3445555543 33459999999999999999874 488888877544 444444445667777776654 45
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|+|+.+++ |..+...+++++.++|||||.+++..+.
T Consensus 92 ~~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 92 QALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 6999999999885 4667889999999999999999998654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-12 Score=124.19 Aligned_cols=125 Identities=19% Similarity=0.330 Sum_probs=93.1
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCC-
Q 010599 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVP- 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~--v~~vdis~~dl~~~~~~~a~~~~~~- 149 (506)
|+.....+..+....++.+.+.+.+.++. +|||||||.|.++.+++++ + |+++++|+.....+.. .+.+.|.+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~-r~~~~gl~~ 122 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK-RIAARGLED 122 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH-HHHHcCCCc
Confidence 77777677777788889999999776554 9999999999999999987 4 5666666544333222 23334555
Q ss_pred -eEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 150 -AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 -~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+...|...+. +.||-|++..+++|+.... ..+++.+.++|+|||.+++-+
T Consensus 123 ~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 123 NVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 444444544443 4499999999999987644 899999999999999999854
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-12 Score=125.25 Aligned_cols=111 Identities=21% Similarity=0.146 Sum_probs=84.1
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YASR 165 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~~~ 165 (506)
.+.+.++ ..+.+|||+|||+|.++..|++.+ |+++|+++.++..+... +.+.+. .+.+...+...++ +.++
T Consensus 36 ~~l~~l~---~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~-~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP---PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA-AEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC---CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4444443 234589999999999999999874 88999988777655433 333333 3566777776664 6678
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|..+++| ..++..+++++.++|||||++++....
T Consensus 112 ~fD~V~~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 112 PVDLILFHAVLEW-VADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCEEEehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 9999999999866 467889999999999999999987543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=125.53 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=75.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCC-CCCCceeEEEEcc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFS-TYPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~-~~p~s~D~v~~~~ 423 (506)
...+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++ |+...+...+ +.++ ..+++||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 34689999999999999999875 5899999999999998876 3222111111 2233 2348999999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+|+++ .++..+|.++.|+|||||+++|.
T Consensus 121 vl~~~---~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWV---ADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 99855 46788999999999999999884
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-12 Score=114.69 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=80.6
Q ss_pred CCEEEEECCCCChhHHHHhh-C----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEcC
Q 010599 103 VRTALDTGCGVASWGAYLWS-R----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCSR 174 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~-~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~~ 174 (506)
+.+|||+|||+|.++..|++ . .++++|+++.++..+.. .+.+.+. .+.+.+.|+.+++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 45899999999999999993 2 48999999877755554 3334444 4888999998877 65 7999999999
Q ss_pred cccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++ ..++..+++++.++|++||.+++..+.
T Consensus 82 ~l~~-~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHH-FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGG-TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhh-ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8855 566789999999999999999998654
|
... |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-13 Score=111.90 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=57.6
Q ss_pred EEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcccccC
Q 010599 107 LDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l~~~~ 180 (506)
||||||+|.++..++++ .++++|+|+.++..+..+.................... ...++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999998776 48999999998855554554433333333333332221 123599999999999887
Q ss_pred CChHHHHHHHHHhcCCCeEE
Q 010599 181 ANDGRYMIEVDRVLRPGGYW 200 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~l 200 (506)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 77899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=128.05 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=92.3
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH--hcCc--cceecccc---ccCCCCCC
Q 010599 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY--ERGL--IGIYHDWC---EAFSTYPR 414 (506)
Q Consensus 342 ~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~--~rg~--~~~~~~~~---~~~~~~p~ 414 (506)
..++..+.....++|||||||+|.++..|+..+. ..|+++|.|+.|+..+. .+.. ...++..+ +.++. ++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 3344444444457899999999999999988652 35999999998886432 2211 11122222 34444 68
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC------------------------hhhHHHHHHHHhcC
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEIIKVKKIVGGM 470 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~~~~~~~~~~ 470 (506)
+||+|+|..++. |..++..+|.++.|+|||||.++|.+. ....+.+..++.+.
T Consensus 189 ~FD~V~s~~vl~---H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 189 AFDTVFSMGVLY---HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERA 265 (322)
T ss_pred CcCEEEECChhh---ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHc
Confidence 999999999988 556888999999999999999998531 11346788889999
Q ss_pred CceEEE
Q 010599 471 RWDTKM 476 (506)
Q Consensus 471 ~w~~~~ 476 (506)
+++...
T Consensus 266 GF~~i~ 271 (322)
T PRK15068 266 GFKDVR 271 (322)
T ss_pred CCceEE
Confidence 998553
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-12 Score=116.12 Aligned_cols=101 Identities=21% Similarity=0.303 Sum_probs=83.8
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeE-EEEeccccCC-CCCCCeeEEEEcCccccc
Q 010599 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKMP-YASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~-~~~~d~~~lp-~~~~sfDlV~~~~~l~~~ 179 (506)
.|||||||+|..-.++... .|+++|.++.|.+-+....+..+...+. +++++.+++| ++++|+|.|+|..++..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS- 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS- 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec-
Confidence 5899999999877776633 5888999887776666666666666666 8888999998 89999999999999865
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 180 GANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..++.+.|+|+.|+|||||.+++..+.
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 678899999999999999999997543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=112.73 Aligned_cols=190 Identities=17% Similarity=0.261 Sum_probs=122.3
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
.+...++.. ...+|.|+|||+|..+..|+++ .++++|-|+. |+..|+.+.+++.|..+|+..+. +...
T Consensus 21 dLla~Vp~~--~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~-----Mla~Aa~rlp~~~f~~aDl~~w~-p~~~ 92 (257)
T COG4106 21 DLLARVPLE--RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPA-----MLAKAAQRLPDATFEEADLRTWK-PEQP 92 (257)
T ss_pred HHHhhCCcc--ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHH-----HHHHHHHhCCCCceecccHhhcC-CCCc
Confidence 344455433 4458999999999999999988 3666766654 55556677888999988887775 4678
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeeccccC
Q 010599 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~~ 246 (506)
+|+++++-+| ||.++-..+|..+...|.|||.|.+-.|.. +..+ ....|.+.++..-|.....
T Consensus 93 ~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN--------~dep------sH~~mr~~A~~~p~~~~l~-- 155 (257)
T COG4106 93 TDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN--------LDEP------SHRLMRETADEAPFAQELG-- 155 (257)
T ss_pred cchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc--------cCch------hHHHHHHHHhcCchhhhhC--
Confidence 9999999887 888888999999999999999999998765 1111 2234566666555655443
Q ss_pred ceEEEEecCCCchhhhccCCCCCCCCCCCCCCchhhccCcccccCCcccCCCCCcCCcccc
Q 010599 247 EIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERL 307 (506)
Q Consensus 247 ~~~i~~kp~~~~~cy~~~~~~~~~~c~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~p~rl 307 (506)
+..+.+++....+.|-.- -.+--|.-+-=...+|.+|..--.....+.|..+.+|=++|
T Consensus 156 ~~~~~r~~v~s~a~Yy~l--La~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L 214 (257)
T COG4106 156 GRGLTRAPLPSPAAYYEL--LAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRL 214 (257)
T ss_pred ccccccCCCCCHHHHHHH--hCcccceeeeeeeeccccCCCccchhhheeccccceecccc
Confidence 333357777656666410 11223432221223454543321111145566666664444
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-12 Score=110.31 Aligned_cols=92 Identities=28% Similarity=0.494 Sum_probs=70.0
Q ss_pred EEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCc-cc
Q 010599 106 ALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC-LI 177 (506)
Q Consensus 106 VLDiGCG~G~~~~~L~~~-------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~-l~ 177 (506)
|||+|||+|..+..+.+. .++++|+++.++..+..... +.+.++.+.+.|..++++.+++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~-~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS-EDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH-HTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch-hcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999888753 47888888766654443332 3456899999999999988899999999655 77
Q ss_pred ccCCCh-HHHHHHHHHhcCCCe
Q 010599 178 PWGAND-GRYMIEVDRVLRPGG 198 (506)
Q Consensus 178 ~~~~~~-~~~l~e~~rvLkPGG 198 (506)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 755433 799999999999998
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-12 Score=125.01 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC
Q 010599 336 KHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST 411 (506)
Q Consensus 336 ~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~ 411 (506)
...+.+..++..+...+..+|||+|||.|+++.+++++- ..+|+++.+|++..+.|.++ |+...+.-.+.++..
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 345556666666666667799999999999999999861 36899999999999977544 654434444566666
Q ss_pred CCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 412 ~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++.+||.|.|-.+|.|.. +...+..+.+++|+|||||.+++
T Consensus 124 ~~~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp ---S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEE
T ss_pred cCCCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEE
Confidence 778999999999999886 35778899999999999999998
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=122.61 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=80.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHH-HHHHHcCCCeEEEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQV-QFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~-~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+...+.. .++++|||||||+|.++..++..+ ++++|.|+.++..... +........+.+...+...+|.. .
T Consensus 111 ~~~l~~l~~--~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~ 187 (314)
T TIGR00452 111 DRVLPHLSP--LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-Y 187 (314)
T ss_pred HHHHHhcCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-C
Confidence 445555532 345699999999999988887763 7888888766543211 11111123455666777788764 4
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|+|+.+++|+ .++..+|++++++|||||.|++.+
T Consensus 188 ~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 188 AFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 89999999999885 678899999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-13 Score=111.19 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred EeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--c----ceeccccccCCCC-C-CceeEEEEccccccc
Q 010599 357 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--I----GIYHDWCEAFSTY-P-RTYDLIHAHGLFSLY 428 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~----~~~~~~~~~~~~~-p-~s~D~v~~~~~~~~~ 428 (506)
||+|||+|.++..+.+.. ...+++++|.|+.|++.+++|-. . .....-..+.... + ++||+|++.++|+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998763 45899999999999977766621 1 1111111222112 2 599999999999976
Q ss_pred cCCCCHHHHHHHHhhcccCCcEE
Q 010599 429 KDKCNIEDILLEMDRILRPEGAI 451 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ 451 (506)
.++..+|..+.++|||||.|
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 68899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=122.23 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=79.7
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCC--CCCceeEEE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST--YPRTYDLIH 420 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~--~p~s~D~v~ 420 (506)
++..+...+..+|||+|||+|.++..|++.. ...+|+++|.|+.|++.|.++.- +... ..++.. .+++||+|+
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~---~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFV---EADIASWQPPQALDLIF 98 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEE---ECchhccCCCCCccEEE
Confidence 3444444556789999999999999998752 23589999999999999988731 1111 123322 237999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.+|++.. +...+|.++.|+|||||.+++.-
T Consensus 99 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 99 ANASLQWLP---DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EccChhhCC---CHHHHHHHHHHhcCCCcEEEEEC
Confidence 999998554 67889999999999999999963
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=131.26 Aligned_cols=112 Identities=18% Similarity=0.306 Sum_probs=86.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
+.+.+.+.. .++.+|||||||+|..+..|++. .++++|+|+.++..+..+ +......+.+.+.|...+++++++
T Consensus 256 e~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLDL--KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcCC--CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCC
Confidence 344555543 34568999999999999888875 488898887665444322 222234567888888888888889
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|+|..+++|+ .++..+++++.|+|||||.|++...
T Consensus 333 fD~I~s~~~l~h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 333 FDVIYSRDTILHI-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCccccc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999885 5689999999999999999999864
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-12 Score=123.68 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
.+.+|||||||+|..+..+++. .++++|+|+.++..+..+..... ...+.+.+.++..+|++ .+|+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4458999999999998887651 58999999988876665554322 12467777788777764 499999999
Q ss_pred cccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 175 CLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++++.++. ..+++++.++|||||.|+++.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 987765433 689999999999999999975
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=129.08 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=84.2
Q ss_pred HHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCcee
Q 010599 338 VNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYD 417 (506)
Q Consensus 338 v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D 417 (506)
...+..++..+...+..+|||+|||+|+++..+++.. ...|+++|.|++|++.|.++.--..+...+.++...+++||
T Consensus 153 ~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD 230 (383)
T PRK11705 153 EAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFD 230 (383)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCC
Confidence 3344444444444455689999999999999998742 24899999999999999987421112222344444568999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|++..+|.|.. ..+++.++.++.|+|||||++++.+
T Consensus 231 ~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 231 RIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999988664 2356789999999999999999953
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=119.27 Aligned_cols=99 Identities=23% Similarity=0.263 Sum_probs=78.5
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|.++..+++. .++++|+++.++ +.+.++. ....+...|...+++++++||+|+++.+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-----AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-----HHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 458999999999999999876 368888866444 3333322 245677788888888889999999999885
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ ..++..++.++.++|+|||.+++.++..
T Consensus 110 ~-~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 110 W-CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred h-ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 5 5678899999999999999999987544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=123.14 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=77.5
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010599 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
.+|||+|||+|.++.+|++. .|+++|+|+.++..+. +.+...++++.+...|....++ +++||+|+++.+++++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 38999999999999999987 4889999887665433 4455566677777777766555 678999999998877543
Q ss_pred -ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 182 -NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 182 -~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+...+++++.++|+|||++++..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 23789999999999999977643
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-12 Score=124.28 Aligned_cols=103 Identities=7% Similarity=0.081 Sum_probs=78.4
Q ss_pred CceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCC-CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p-~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|..+..|+.. ......|+++|.|++|++.|.++- ....+...+.++..+| ..+|+|.++.+|+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 457999999999998887652 112368999999999999998872 2222333345555555 6799999988888
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++. ..+...++.+|.|+|||||.|++.|.
T Consensus 137 ~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 137 FLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 665 23467899999999999999999874
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=113.79 Aligned_cols=108 Identities=25% Similarity=0.332 Sum_probs=82.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCe
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-PYASRAF 167 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l-p~~~~sf 167 (506)
+.|++++ . ++.+|||+|||.|.+..+|.+. ++.+.++ +++.+.+..+..+|+++.....+. .| .|++++|
T Consensus 5 ~~I~~~I--~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sF 76 (193)
T PF07021_consen 5 QIIAEWI--E--PGSRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSF 76 (193)
T ss_pred HHHHHHc--C--CCCEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCc
Confidence 4577777 2 3459999999999999999884 6666655 555677778888998765543333 44 4899999
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010599 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
|.|+++.++.+. .++..+|+|+.|+ |...+++.|+..+
T Consensus 77 D~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVsFPNFg~ 114 (193)
T PF07021_consen 77 DYVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVSFPNFGH 114 (193)
T ss_pred cEEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEEecChHH
Confidence 999999999775 5688999999777 6688888877743
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=122.22 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=90.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCCCCCceeEEEEcccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~ 429 (506)
..+|||+|||+|.++..+++.. ...+|+++|.+++|++.|.++.. +...+.-.++++..+++||+|.++.++++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~- 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW- 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-
Confidence 4589999999999988886631 12589999999999999988632 122222223444445899999999888844
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEeCh-----------------hhHHHHHHHHhcCCceEEEee
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRDEV-----------------DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------~~~~~~~~~~~~~~w~~~~~~ 478 (506)
.+.+.+|.|+.|+|||||.++|.+.. ...+++.+++++.+++...+.
T Consensus 192 --~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 192 --PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred --CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 46788999999999999999886421 135778889999999865443
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=111.19 Aligned_cols=140 Identities=14% Similarity=0.223 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc
Q 010599 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE 407 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~ 407 (506)
..|++++..-..+...+. ..+|||+|||+|.++..|+... ...+|+++|.+++|++.+.+. ++ ..+...+.
T Consensus 25 ~~~~~~~~d~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD---GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEec
Confidence 466666654333333343 4689999999999888776432 125799999999998866543 43 12222334
Q ss_pred cCCCC--CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhc---CCceEEEeecCCC
Q 010599 408 AFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG---MRWDTKMVDHEDG 482 (506)
Q Consensus 408 ~~~~~--p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~---~~w~~~~~~~~~~ 482 (506)
++..+ +++||+|.|.. + .+++.++.++.|+|||||.+++.+......++..+.+. .+.+..-.+.-++
T Consensus 100 d~~~~~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 100 RAEDFQHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred chhhccccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 44333 38999999854 2 35677999999999999999998877766666666555 5555444333344
Q ss_pred C
Q 010599 483 P 483 (506)
Q Consensus 483 ~ 483 (506)
|
T Consensus 173 ~ 173 (181)
T TIGR00138 173 P 173 (181)
T ss_pred C
Confidence 4
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=120.67 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|..+..++.. .++++|+++.++..+..... ..+. .+.+...+...+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~-~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR-KAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH-HcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 4569999999999877665543 38899998877665544332 3333 466777888889998889999999988
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ ..+...+++++.|+|||||+|+++.
T Consensus 156 ~~~-~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INL-SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 755 5667899999999999999999975
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=118.92 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=73.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCe--EEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLW--VMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~--~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~ 428 (506)
...+|||+|||+|.++..|++.... ...|+++|.|++|+..|.++.. +.....-.+.+|+-+++||+|++.. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~--~-- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIY--A-- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEec--C--
Confidence 3467999999999999998764211 1378999999999999988742 1222211244554458999999732 1
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHH
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKI 466 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~ 466 (506)
+..+.|+.|+|||||+|++..... ...+++.+
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 125789999999999999986543 33445444
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-12 Score=113.81 Aligned_cols=101 Identities=20% Similarity=0.312 Sum_probs=78.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC----CceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP----RTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p----~s~D~v~~~~~ 424 (506)
..+|||+|||+|.++..|++.-....+++++|.+++|++.|.++ ++. .++..++++..++ +.||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcCc
Confidence 45799999999999999984211135799999999999999884 332 3333344444444 78999999998
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+. +..++..+|+++.|.|||||.+++.+..
T Consensus 83 l~---~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LH---HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GG---GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hh---hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 86 4457788999999999999999998876
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=115.67 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=87.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
..+.+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+... .........+...|...+
T Consensus 5 ~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLAVQ--PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccC
Confidence 34445566666543 3459999999999999988764 478888877555433322 112234567777788888
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++++||+|++..+++|+ .++..+++++.++|||||++++..+.
T Consensus 82 ~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8888999999999998775 56889999999999999999998653
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=117.84 Aligned_cols=118 Identities=17% Similarity=0.277 Sum_probs=88.8
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccccccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D~v~~~~~~~~~ 428 (506)
+|||+|||+|.++..+++.. ...+|+++|.|++++..+.++ |+...+.....++.. ++++||+|++..+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 69999999999999888742 125799999999999988875 332222222233322 35899999999999855
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEE
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~ 476 (506)
. +...+|.++.|+|||||++++.+... ...++.+++.+.++++..
T Consensus 81 ~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 81 K---DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred C---CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 4 67889999999999999999976421 346788888999999653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=109.53 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=75.0
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|..+..++.. .++++|+++.++..+... +.+.+. ++.+...+...++. .++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 568999999999988888753 589999988777555443 333444 36777778777776 679999999642
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+...+++++.++|||||++++....
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 34578999999999999999998643
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=118.76 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..++++ .++++|+++.++..+..+..... ..++.+...|...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 4458999999999999888763 48899998877765554433221 23567788888888765 489999999
Q ss_pred cccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 175 CLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|+.+ +...+++++.|+|||||.|+++.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9877643 237899999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-12 Score=119.44 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=78.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceec--ccc---ccCCCCCCceeEEEEcccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH--DWC---EAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~--~~~---~~~~~~p~s~D~v~~~~~~~~ 427 (506)
..+|||+|||-|.++..|+..| .+|+++|+++.++++|..+.....+. +.+ |++..--.+||+|.|..|++
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE- 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE- 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH-
Confidence 4479999999999999999988 79999999999999998664322111 112 22222226999999998888
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
|..+++.++.+..+.+||||.+++++.
T Consensus 136 --Hv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 --HVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred --ccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 566888899999999999999999765
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-11 Score=114.44 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=71.5
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+.+|||||||+|.++..|++. .++++|+|+.++ +.|+++.....+.+.++.. |+++++||+|+++.+++|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-----~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-----EKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-----HHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 458999999999999998765 377887776544 4554443445566677766 888999999999999999
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 179 WGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.++. ..+++++.|++ ++++++..
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 75433 78999999997 56777754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-12 Score=121.34 Aligned_cols=104 Identities=8% Similarity=0.090 Sum_probs=78.3
Q ss_pred CCceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~v~~~~~~ 425 (506)
...+|||+|||+|.++..|++.. ....+++++|.|++|+..|.++ +....+...+.++..++ ..+|+|.++.++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 34579999999999998887641 1236899999999999999876 11112223345555555 679999998888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++.. ..+...+|.++.|+|||||.++|.|.
T Consensus 133 ~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 133 QFLP-PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7654 22467899999999999999999875
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=116.46 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=75.8
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH------------HcCCCeEEEEeccccCCCC-CCCe
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL------------ERGVPAVIGVLGTIKMPYA-SRAF 167 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~------------~~~~~~~~~~~d~~~lp~~-~~sf 167 (506)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .++..+.+.++|...++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 4589999999999999999985 88899888666533221100 0233567778888777643 4579
Q ss_pred eEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010599 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
|.|+...+++|+.++. ..+++.+.++|||||++++.
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9999988888876555 67999999999999986665
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=108.17 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=89.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccC-CCCCCceeEEEEccccccccC
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAF-STYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~-~~~p~s~D~v~~~~~~~~~~~ 430 (506)
.+|||+|||+|.++..++..+. .|+++|.+++|++.+.++-- .+ .....+.++ ...+++||+|.++.-+.+...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence 5699999999999999998753 89999999999998876510 00 111111222 223479999999877653321
Q ss_pred C------------------CCHHHHHHHHhhcccCCcEEEEEeChhh-HHHHHHHHhcCCceEEEeecC
Q 010599 431 K------------------CNIEDILLEMDRILRPEGAIIIRDEVDE-IIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 431 ~------------------~~~~~~l~e~~RvLrPgG~~ii~d~~~~-~~~~~~~~~~~~w~~~~~~~~ 480 (506)
. ..++.+|.++.|+|||||.+++.+.... ..++..++++.+|...+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe
Confidence 1 1146789999999999999999776543 678888899999997765443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.9e-11 Score=114.89 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=79.8
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--Cccceecccccc---CCCCCCceeEEE
Q 010599 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--GLIGIYHDWCEA---FSTYPRTYDLIH 420 (506)
Q Consensus 346 ~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r--g~~~~~~~~~~~---~~~~p~s~D~v~ 420 (506)
..+......+|||+|||+|.++..+++......+++++|.++.+++.+.++ +....+.....+ ++..+.+||+|+
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 92 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVR 92 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEE
Confidence 344445567899999999999998887421235899999999999999887 221222222223 333348999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+..+|.+. .++..++.++.++|||||++++.+
T Consensus 93 ~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 93 SDRVLQHL---EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred Eechhhcc---CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 99999854 467889999999999999999865
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=7e-11 Score=120.13 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+..+.. ...+.+...|...+++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 3458999999999988888763 48889998776654443322 1235567788888999999999999999887
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++ +++..+++++.|+|||||.+++..+
T Consensus 190 ~~-~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 190 YW-PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hC-CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 75 5678999999999999999988653
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=113.45 Aligned_cols=104 Identities=12% Similarity=0.213 Sum_probs=75.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhC---CCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCCCCCceeEEEEc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDLIHAH 422 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~---~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~~p~s~D~v~~~ 422 (506)
...+..+|||+|||+|.++..|++. .....+|+++|.+++|++.|.++.. +.....-++.++..+++||+|.|+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 3345678999999999998887641 1223589999999999999988732 111111234555545899999999
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+|+|..+. ++..+|.||.|++| |.++|.|
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 999876532 35689999999999 5666654
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=107.50 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=86.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCCCceeEEEEc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYPRTYDLIHAH 422 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p~s~D~v~~~ 422 (506)
+......+|||+|||+|.++..++... ...+|+++|.++.|++.+.++ ++ ..+...+.+.. .+++.||+|++.
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIG 104 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEEC
Confidence 333345689999999999999887652 235899999999999988764 22 12222223332 245789999985
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEe-ChhhHHHHHHHHhcCCce
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w~ 473 (506)
... ..+..++.++.++|||||++++.+ ..+...++.+++++.+|.
T Consensus 105 ~~~------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 105 GSG------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred CCc------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 543 246779999999999999999976 445677888899998985
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.1e-11 Score=111.58 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc-ccCC--CCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMP--YASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~-~~lp--~~~~sfDlV~~~~ 174 (506)
.+.+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+.+.|+ ..++ +++++||+|++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 3458999999999999998764 4899999997776555444332223467788887 6666 7788999999976
Q ss_pred cccccCC--------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 175 CLIPWGA--------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l~~~~~--------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. +|.. ....+++++.++|||||+|+++.+..
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 54 3322 13678999999999999999987544
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-11 Score=112.07 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=100.0
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCCCCCCce
Q 010599 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFSTYPRTY 416 (506)
Q Consensus 342 ~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~~~p~s~ 416 (506)
..++..|.....++|.|+|||+|.....|.++ .....++++|.|++||+.|++|.. .+.++.|+ .+..+
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-----p~~~~ 93 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-----PEQPT 93 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-----CCCcc
Confidence 34566788888999999999999999999885 345789999999999999999874 34555555 13889
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe--Ch--hhHHHHHHHHhcCCceEEE
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD--EV--DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--~~--~~~~~~~~~~~~~~w~~~~ 476 (506)
|+++++.+|..+..+. .+|..+---|.|||.|.+.- .. +....|++.++..-|...+
T Consensus 94 dllfaNAvlqWlpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 94 DLLFANAVLQWLPDHP---ELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQEL 154 (257)
T ss_pred chhhhhhhhhhccccH---HHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhh
Confidence 9999999999887664 47888888899999999953 22 3567788888888887443
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=109.15 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=76.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceecccccc---CCCCCCceeEEEEcccc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEA---FSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~---~~~~p~s~D~v~~~~~~ 425 (506)
..+..+|||+|||+|.++..++.......+++++|.++.++..+.++.. ....+..+.+ ++..+++||+|+++.++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 3356789999999999999998764211479999999999998887642 1111111222 33223789999998888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+ +..++..+|+++.++|||||++++.+
T Consensus 117 ~---~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 R---NVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred C---CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 7 44578899999999999999999855
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=114.85 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=92.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~ 432 (506)
..+|||+|||+|.++.+++..+. ..|+++|.++.|++.|.++.-.....+. -.+..-+.+||+|+|+... .
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~-~~~~~~~~~fD~Vvani~~------~ 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELN-VYLPQGDLKADVIVANILA------N 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCce-EEEccCCCCcCEEEEcCcH------H
Confidence 46899999999999888877653 3599999999999998876311111000 0111112379999985322 2
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 433 NIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.+..++.++.|+|||||++++++... ..+.+...+++.+|++.....+ +.+..++++|+
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~~ 250 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKKK 250 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEeC
Confidence 35678999999999999999997654 5677888899999997654443 36888888874
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-11 Score=117.24 Aligned_cols=129 Identities=18% Similarity=0.284 Sum_probs=95.7
Q ss_pred Chhhhhhhhh-hhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----C
Q 010599 323 SAESYQEDSN-KWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G 397 (506)
Q Consensus 323 ~~~~f~~~~~-~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g 397 (506)
+..+|+..+. .=......+..++..+.-.+..+|||||||.|+++.++++.- ..+|+++++|++++..+.+| |
T Consensus 42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g 119 (283)
T COG2230 42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG 119 (283)
T ss_pred eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC
Confidence 3444444442 223344455555666666677899999999999999998852 36899999999999976664 6
Q ss_pred ccceeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 398 LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 398 ~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+...++-.-++...++..||-|.|-.+|+|..+ ......+.-++++|+|||.+++-
T Consensus 120 l~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 120 LEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred CCcccEEEeccccccccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 653443334556666777999999999998873 46788999999999999999983
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-11 Score=118.56 Aligned_cols=121 Identities=16% Similarity=0.078 Sum_probs=85.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceecccc---ccCCCCCCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWC---EAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~---~~~~~~p~s~D~v~~~~~~ 425 (506)
...+|||+|||+|..+..++..-....+|+++|.+++|++.|+++.- +..+.... +.++..+++||+|+++.++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 35689999999998766555421122479999999999999987521 11111112 3334334799999999888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----------------------hhHHHHHHHHhcCCceEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
++. .+...+|.|+.|+|||||+|++.|.. ....++.++++..++...
T Consensus 157 ~~~---~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 157 NLS---PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred cCC---CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 743 46788999999999999999997531 023467777888888754
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-11 Score=127.53 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=79.9
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
+.+|||||||+|.++..+++. .++++|+|+.++..+..+. ...+.+..+.++|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 458999999999998888764 5899999887776554433 233455667777887787 788999999999888
Q ss_pred cccC------------CChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 177 IPWG------------ANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~------------~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++. .+...+++++.++|||||.+++...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7652 1337899999999999999999753
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-11 Score=113.99 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc--CCC----eEEEEeccccCCCCCCCeeEEEEcC
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER--GVP----AVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~--~~~----~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
+++|||+|||+|-++..|++.+ |+++|++..++..+........ ..+ ..+.+.+.+.+ .+.||.|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 5789999999999999999885 6667666654433332211100 001 11222223322 24599999999
Q ss_pred cccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++|. .++..++..+.+.|||||.+++++-..
T Consensus 167 vleHV-~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 167 VLEHV-KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHH-hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 99994 678999999999999999999987443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=107.15 Aligned_cols=149 Identities=14% Similarity=0.187 Sum_probs=99.0
Q ss_pred CCChhhhhh--hhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--
Q 010599 321 GVSAESYQE--DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-- 396 (506)
Q Consensus 321 ~~~~~~f~~--~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-- 396 (506)
|+.-..|.. +...++..++.- .+..+......+|||+|||+|.++..++..-....+|+++|.++.|++.+.++
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~ 86 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRAL--ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE 86 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHH--HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 445555664 335676666431 22334444556899999999999887765311235899999999999987655
Q ss_pred --CccceeccccccCC----CCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE-eChhhHHHHHHHHhc
Q 010599 397 --GLIGIYHDWCEAFS----TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGG 469 (506)
Q Consensus 397 --g~~~~~~~~~~~~~----~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~ 469 (506)
|+...+...+.++. ..+..||.|++.. ....+..+|.++.|+|||||++++. -..+.+.++...++.
T Consensus 87 ~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 87 KFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred HhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 32222222223332 2347899999843 1246788999999999999999983 344566778888888
Q ss_pred CCceEEEe
Q 010599 470 MRWDTKMV 477 (506)
Q Consensus 470 ~~w~~~~~ 477 (506)
++++..+.
T Consensus 161 ~g~~~~~~ 168 (198)
T PRK00377 161 IGFNLEIT 168 (198)
T ss_pred cCCCeEEE
Confidence 88875544
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-11 Score=117.38 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=88.0
Q ss_pred hhhhhhhhhhhHHHHHHHHH-HhhhcCCCCCceEEeecCcccH----HHHHHHhCC----CeEEEEeecCCCcccHHHHH
Q 010599 324 AESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGG----FAAAIQSSK----LWVMNVVPTLADKNTLGVIY 394 (506)
Q Consensus 324 ~~~f~~~~~~W~~~v~~y~~-~~~~i~~~~~~~vLD~gcG~G~----~~~~l~~~~----~~~~~v~~~d~~~~~l~~~~ 394 (506)
...|-.|...|+........ +......++..+|+|+|||||. +|..|.+.. .+...|+++|+|+.||+.|.
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 34577777888876554322 2222222334689999999996 454554421 23578999999999999998
Q ss_pred hcCc--------c----------------------ceeccccccCCC--C-CCceeEEEEccccccccCCCCHHHHHHHH
Q 010599 395 ERGL--------I----------------------GIYHDWCEAFST--Y-PRTYDLIHAHGLFSLYKDKCNIEDILLEM 441 (506)
Q Consensus 395 ~rg~--------~----------------------~~~~~~~~~~~~--~-p~s~D~v~~~~~~~~~~~~~~~~~~l~e~ 441 (506)
+.-. . ..+.....++.. + ++.||+|+|.++|.+.. ..+...++.++
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l 228 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRF 228 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHH
Confidence 6411 0 011111122221 2 38999999999998654 23456899999
Q ss_pred hhcccCCcEEEEEeCh
Q 010599 442 DRILRPEGAIIIRDEV 457 (506)
Q Consensus 442 ~RvLrPgG~~ii~d~~ 457 (506)
+|+|||||+|+|....
T Consensus 229 ~~~L~pGG~L~lg~~E 244 (264)
T smart00138 229 AEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHhCCCeEEEEECcc
Confidence 9999999999996554
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.2e-12 Score=104.75 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=67.3
Q ss_pred EEeecCcccHHHHHHHhCC--CeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCC---CceeEEEEccc-ccc
Q 010599 356 IMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYP---RTYDLIHAHGL-FSL 427 (506)
Q Consensus 356 vLD~gcG~G~~~~~l~~~~--~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p---~s~D~v~~~~~-~~~ 427 (506)
|||+|||+|..+..+.+.- .....++++|.+++||..++++.- -..++..+.++..++ ++||+|.++.. |.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998642 112689999999999999998862 012233345555444 79999999544 776
Q ss_pred ccCCCCHHHHHHHHhhcccCCc
Q 010599 428 YKDKCNIEDILLEMDRILRPEG 449 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG 449 (506)
.+...++.+|.++.++|||||
T Consensus 81 -~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 -LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -SSHHHHHHHHHHHHHTEEEEE
T ss_pred -CCHHHHHHHHHHHHHHhCCCC
Confidence 445578899999999999998
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-10 Score=125.11 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=85.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccC----CCCCCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAF----STYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~----~~~p~s~D~v~~~~ 423 (506)
.++|||+|||+|+|+.+++..+. ..|+++|.|+.+++.|.+. |+. ..+...+.++ ..+.++||+|.++-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 36899999999999999998653 3699999999999988775 221 1122222221 12357899999842
Q ss_pred -ccccccC-------CCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC
Q 010599 424 -LFSLYKD-------KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 424 -~~~~~~~-------~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.|..... ..+...++....++|+|||.+++...........+.+...++.+.++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAK 681 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecC
Confidence 1111000 11235688888999999999999665554444567778889998876543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.9e-11 Score=112.88 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=87.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceecccc-ccCCC-C-CCceeEEEEc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWC-EAFST-Y-PRTYDLIHAH 422 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~-~~~~~-~-p~s~D~v~~~ 422 (506)
...+|||+|||+|.++..|++.. ...+|+++|.+++|++.|.++ ++ +..++.-. +.++. + +++||+|.++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 35689999999999999987642 235899999999999988764 22 11121111 23331 4 4899999985
Q ss_pred ccccccc-----CCCCHHHHHHHHhhcccCCcEEEEE-eChhhHHHHHHHHhcCCceEEE
Q 010599 423 GLFSLYK-----DKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 423 ~~~~~~~-----~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
....... .+.....+|.++.|+|||||.++|. +.......+.+.+.+.+|.+.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 4332111 1123578999999999999999996 5556778888888888998663
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=109.45 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=85.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----C-ccceeccccccC--CCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G-LIGIYHDWCEAF--STYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g-~~~~~~~~~~~~--~~~p~s~D~v~~~~ 423 (506)
.+..+|||+|||+|.++..|++... ...|+++|.++.|++.+.++ . +.....+..+.. ..++.+||+|.+..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 3446899999999999999987521 34799999999998854333 1 111111111100 11347799998621
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEE------EeChh----hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIII------RDEVD----EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii------~d~~~----~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
. +......+|.|+.|+|||||.++| .|... ..++..+.+++.+++......-..-..+.+.++++
T Consensus 150 ~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 150 A-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred C-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 1 111223468999999999999999 34321 22334577888888855332221111357788887
Q ss_pred ec
Q 010599 494 KQ 495 (506)
Q Consensus 494 k~ 495 (506)
|+
T Consensus 225 ~~ 226 (226)
T PRK04266 225 KK 226 (226)
T ss_pred cC
Confidence 64
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=109.27 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=85.8
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH----HHHhcCccceeccccccCCC--CCCceeEEEEc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCEAFST--YPRTYDLIHAH 422 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~~~~~~--~p~s~D~v~~~ 422 (506)
..-+..++||+|||.|.-+.+|+++| .+|+++|.|+..++ +|.++++. ++.++.++.. +++.||+|.+.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st 101 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVST 101 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEE
Confidence 33345589999999999999999998 68999999987776 44445552 3333445544 34899999998
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEe-----C------hh---hHHHHHHHHhcCCceEEEe
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-----E------VD---EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-----~------~~---~~~~~~~~~~~~~w~~~~~ 477 (506)
.+|.++. +..++.++..|..-|+|||+++|.. . .+ ...+|...+. .|++...
T Consensus 102 ~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 102 VVFMFLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp SSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred EEeccCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 8887665 6688999999999999999998832 1 11 3367888777 5997643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=111.81 Aligned_cols=122 Identities=9% Similarity=0.177 Sum_probs=91.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----cceeccccccCCCCCCceeEEEEccccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~~~~~~~~~~~~~~p~s~D~v~~~~~~~ 426 (506)
.+..+|||+|||+|.++..|++.+ ..|+++|.+++|+..|.++.. ...+...+.++...+++||+|.+..++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 346789999999999999998865 479999999999999988732 1123334455655669999999988887
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------------------hHHHHHHHHhcCCceEEE
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~~~~~w~~~~ 476 (506)
+.. ..++..++.++.|+++|++.+.+..... ..+++.++++..+|++..
T Consensus 131 ~~~-~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 131 HYP-ASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred hCC-HHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 653 3457789999999999988887743211 346677788888888554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=111.49 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=77.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.. ....++++|.+++++..+.++.. +..+..-.+.++..+++||+|+++.++++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc--
Confidence 3579999999999999998764 23468999999999999888742 111211123444445899999999988844
Q ss_pred CCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 431 KCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.++..+|.++.|+|||||.+++.+.
T Consensus 112 -~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 112 -DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred -cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4778899999999999999999653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-10 Score=106.88 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=75.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceecccccc---CCCCCCceeEEEEccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEA---FSTYPRTYDLIHAHGL 424 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~---~~~~p~s~D~v~~~~~ 424 (506)
+..+|||+|||+|.++..++.......+++++|.++.+++.+.++. +...+.....+ ++.-+++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 4468999999999999988775321368999999999999888762 11111111222 2222389999999888
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+. +..++..+|.++.++|+|||.+++.+
T Consensus 131 l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 77 45578899999999999999999854
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.7e-11 Score=127.01 Aligned_cols=103 Identities=19% Similarity=0.170 Sum_probs=76.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCC--CCCCceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFS--TYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~--~~p~s~D~v~~~~~~ 425 (506)
..+|||+|||+|.++..|+.. ....+|+++|.|+.|++.|.++.. +..+..-+..++ +-+++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 468999999999998888764 234699999999999999887621 111111123344 234899999998888
Q ss_pred ccccC----------CCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 426 SLYKD----------KCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~----------~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++.. ..++..+|.++.|+|||||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 75421 23567899999999999999999884
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=119.91 Aligned_cols=114 Identities=23% Similarity=0.413 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc--CCCeEEEEe
Q 010599 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER--GVPAVIGVL 155 (506)
Q Consensus 81 f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~--~~~~~~~~~ 155 (506)
+.......++.+.+.+... ++.+|||||||+|.++..+++. .|+++|+|+.++ +.+.++ +..+.+...
T Consensus 148 L~~Aq~~k~~~l~~~l~l~--~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-----~~A~~~~~~l~v~~~~~ 220 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLK--PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-----KLAQERCAGLPVEIRLQ 220 (383)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHHHhccCeEEEEEC
Confidence 4444455566777777554 3459999999999999999875 377777776544 333332 334555555
Q ss_pred ccccCCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 156 GTIKMPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|...+ +++||.|++..+++|... +...+++++.++|||||++++..
T Consensus 221 D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 221 DYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred chhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 65544 468999999998888643 23789999999999999999975
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=106.22 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=79.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceeccccccCCCCC-CceeEEEEc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~~~~~~p-~s~D~v~~~ 422 (506)
..-..||.+|||||.--.++...+ .-.|+.+|.+++|-+++..+-- ...++.-.|.++.++ .|||.|.+.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCT 152 (252)
T ss_pred cCccceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEE
Confidence 334468999999998766665433 3679999999999997765521 224455568888776 999999998
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.++. ...++..+|.|+.|+|||||.+++-+..
T Consensus 153 lvLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 153 LVLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8888 6678999999999999999999996654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-11 Score=114.71 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=80.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c----cc----eeccccccCCCCCCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L----IG----IYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~----~~----~~~~~~~~~~~~p~s~D~v~~~~ 423 (506)
.++|||+|||+|-+...|+..| .+|+++|++.+|+++|.++- . .+ .+...|.+.+..-..||.|.|+-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 4679999999999999999976 79999999999999999873 1 12 12233455554557799999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++ |..++..++.-+.+.|||||.++|++.
T Consensus 167 vle---HV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLE---HVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHH---HHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 988 555888999999999999999999764
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=111.58 Aligned_cols=109 Identities=24% Similarity=0.291 Sum_probs=78.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHc-CCCe--EEEEeccccCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER-GVPA--VIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~-~~~~--~~~~~d~~~lp~~ 163 (506)
+.+...++ +-.+++|||||||.|+++-.++.+| |+++|-+ .....+.++.++- +... ...-..++.+|.
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~--~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPS--PLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCC--hHHHHHHHHHHHHhCCCccEEEcCcchhhccc-
Confidence 34444442 3356799999999999999999885 5555544 3444444444332 2222 222246788887
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++||+|+|..+|.|. .+|-..|.++...|+|||.+++.+
T Consensus 180 ~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEE
Confidence 7899999999999994 678999999999999999999853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=106.22 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=76.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC---CCCCCeeEEEEcCc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP---YASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp---~~~~sfDlV~~~~~ 175 (506)
..+|||||||+|.++..++.+ .++++|+++.++..+..+.......++.+...|+..++ +++++||.|++++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 348999999999999999876 58999998877765554443332224677777776543 55679999998765
Q ss_pred ccccCCCh--------HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 176 LIPWGAND--------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~--------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
. +|.... ..+++++.++|||||.|++.+..
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3 443321 47899999999999999998643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-10 Score=96.53 Aligned_cols=109 Identities=17% Similarity=0.023 Sum_probs=74.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MPYAS 164 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~-lp~~~ 164 (506)
..+.+.+... .+.+|||+|||+|.++..++++ .++++|+++..+..+..........+..+...+... ++...
T Consensus 9 ~~~~~~~~~~--~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 9 ALTLSKLRLR--PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 3344555333 2348999999999999999875 488999988666555443333222235555555543 33334
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||.|++.....+ ...+++++.+.|||||+|++..
T Consensus 87 ~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence 68999999765422 3689999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=110.73 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=73.3
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH------------HcCCCeEEEEeccccCCCC-CCCe
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL------------ERGVPAVIGVLGTIKMPYA-SRAF 167 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~------------~~~~~~~~~~~d~~~lp~~-~~sf 167 (506)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .....+.+.++|...++.. .+.|
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 3589999999999999999985 88888887655443211100 0123456677888777533 3589
Q ss_pred eEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010599 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
|+|+...+++|+.++. ..+++.+.++|+|||++++
T Consensus 118 d~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 118 DAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999988888876544 7899999999999997554
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=112.34 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=78.9
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEE
Q 010599 78 GTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (506)
Q Consensus 78 ~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~ 154 (506)
+..|+.|.........+.+.....++.+|||+|||+|.++..++.. .++++|+++.++..+..+. ...+.......
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~-~~n~~~~~~~~ 213 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNA-ELNQVSDRLQV 213 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCcceEE
Confidence 3446555544444333333211224569999999999998888765 4899999987775554433 33444322221
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
......+...++||+|+++..... ...++.++.++|||||+|++++.
T Consensus 214 ~~~~~~~~~~~~fDlVvan~~~~~----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 214 KLIYLEQPIEGKADVIVANILAEV----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EecccccccCCCceEEEEecCHHH----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 111123344678999999764322 36789999999999999999864
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=115.42 Aligned_cols=103 Identities=16% Similarity=0.260 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCCh----hHHHHhhC---------CcEEEecCccchHHHHHHHH---HHcC------------------
Q 010599 102 TVRTALDTGCGVAS----WGAYLWSR---------NVIAMSFAPRDSHEAQVQFA---LERG------------------ 147 (506)
Q Consensus 102 ~~~~VLDiGCG~G~----~~~~L~~~---------~v~~vdis~~dl~~~~~~~a---~~~~------------------ 147 (506)
.+.+|||+|||+|. ++..|++. .++++|+++.++..+....- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999995 44444432 47888888877655543210 0000
Q ss_pred ------CCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 148 ------VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 ------~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.+.+.|....+++.++||+|+|.++++|+.+.. ..+++++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 135677788888877788999999999998875322 689999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=106.60 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=69.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
....++||+|||.|.++..|+.+ .++++|+++. +++.|+++ ...+.+.+.+.... .|.++||+|+++.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~-----Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR-----ALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH-----HHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHH-----HHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 34558999999999999999998 6888988764 44455443 23477777776443 57889999999999
Q ss_pred ccccCCC--hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 176 LIPWGAN--DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~--~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++++.+. ...++..+...|+|||.|++...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9776542 26789999999999999999753
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=109.62 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 010599 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFDM 169 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfDl 169 (506)
+.+|||||||+|.++..++++ .|+++|+++ +. ....+.+.++|+...+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 458999999999999988775 388999976 11 1123567777876643 66789999
Q ss_pred EEEcCcccccCCCh-----------HHHHHHHHHhcCCCeEEEEEcC
Q 010599 170 AHCSRCLIPWGAND-----------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~-----------~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+|+.+. ++..++ ..+|+++.++|||||.|++...
T Consensus 121 V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9998755 333222 3589999999999999999753
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=110.67 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=74.5
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999999988865 3778888775554443332 22233 356666777666665 48999999999877
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 179 WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+ .+...+++++.++|||||++++...
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 5 5678999999999999999999864
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-10 Score=113.07 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=83.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCC-CCCCceeEEEEcccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFS-TYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~-~~p~s~D~v~~~~~~~~ 427 (506)
..+|||+|||+|.++.+++..+. ..|+++|.++.|++.|.+.. +............ ..++.||+|+++.+..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH-
Confidence 36899999999999988877652 48999999999999888763 2111222222222 2348999999964432
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEe
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~ 477 (506)
.+..++.++.|+|||||+++++.... ..+++.+.+++. |++...
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 34678999999999999999987653 556777777776 875543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=107.44 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=73.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccccCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|.+.. ...+++++|.|++|++.|.++.. +...+.-... +..+++||+|.+..+|+|+. .
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-P 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-H
Confidence 4579999999999999998751 12589999999999999988632 1222111112 33348999999999999774 4
Q ss_pred CCHHHHHHHHhhcccCCcEEEEEe
Q 010599 432 CNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.++..++.||.|++ +++++|.+
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 56789999999998 57888854
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-10 Score=109.71 Aligned_cols=113 Identities=21% Similarity=0.208 Sum_probs=79.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecc------ccccCCCC--CCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHD------WCEAFSTY--PRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~------~~~~~~~~--p~s~D~v~~~~~ 424 (506)
-+.++|+|||+| .|+...+.- --+|+++|.|+.||++|.+.--+ .++. -.+.++.. ++|.|+|.|...
T Consensus 34 h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 34 HRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred cceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhhhh
Confidence 458999999999 555554321 25899999999999999876432 1211 11223333 799999999888
Q ss_pred cccccCCCCHHHHHHHHhhcccCCc-EEEE---EeChhhHHHHHHHHhcCCce
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEG-AIII---RDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG-~~ii---~d~~~~~~~~~~~~~~~~w~ 473 (506)
| |+++++.++.++.|||||.| .+.| +|......+...+..++.|+
T Consensus 110 ~----HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 110 V----HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred H----HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 8 59999999999999999988 4444 54444445555565665554
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=113.19 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=85.1
Q ss_pred CCeEEcCCCCCCChhhH-HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH
Q 010599 69 GNVFRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA 143 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~-~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a 143 (506)
+..+.+.+....|.... +.-.+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++.++..+..+..
T Consensus 196 ~~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~ 273 (378)
T PRK15001 196 GTDWTIHNHANVFSRTGLDIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE 273 (378)
T ss_pred CceEEEEecCCccCCCCcChHHHHHHHhCCccc--CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 34444444444444432 333344566665332 248999999999999999875 48999998866655544443
Q ss_pred HHcCC----CeEEEEeccccCCCCCCCeeEEEEcCcccccC--C-C-hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 144 LERGV----PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG--A-N-DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 144 ~~~~~----~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~--~-~-~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. .+. .+.+...|... .++.++||+|+|+..++.-. . + ...++.++.++|+|||.|+++..
T Consensus 274 ~-n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 274 T-NMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred H-cCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 2 222 24455444422 23456899999997764321 1 1 15789999999999999999963
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=106.35 Aligned_cols=122 Identities=17% Similarity=0.327 Sum_probs=98.6
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEc
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~D~v~~~ 422 (506)
+...|.++ .+|||+|||.|.+.++|.+.. .....+++.+++.+..+.+||+.-...|.-+.++.|| ++||.|..+
T Consensus 7 I~~~I~pg--srVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 7 IAEWIEPG--SRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHHcCCC--CEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 34456655 579999999999999998832 3578999999999999999999777777888898888 999999999
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEE----------------------eChh------------hHHHHHHHHh
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR----------------------DEVD------------EIIKVKKIVG 468 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~----------------------d~~~------------~~~~~~~~~~ 468 (506)
..+.+.. .++.+|.||-|| |...||+ +.++ .+...+.++.
T Consensus 83 qtLQ~~~---~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 83 QTLQAVR---RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred hHHHhHh---HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 9988554 678899999877 5567773 2221 6788999999
Q ss_pred cCCceEE
Q 010599 469 GMRWDTK 475 (506)
Q Consensus 469 ~~~w~~~ 475 (506)
.+++++.
T Consensus 157 ~~~i~I~ 163 (193)
T PF07021_consen 157 ELGIRIE 163 (193)
T ss_pred HCCCEEE
Confidence 9999865
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.8e-10 Score=101.61 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=70.6
Q ss_pred CCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
..+|||+|||+|.++..++++ . ++++|+++..+..+. +.+...+.. +.+...|... +.+.++||+|+|+..++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 448999999999999999886 3 889999886554443 334445555 6666656533 33478999999997653
Q ss_pred ccCCC-----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 PWGAN-----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~-----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ..+ ...++++..+.|||||.|++...
T Consensus 110 ~-~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 A-GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp T-TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 2 222 25789999999999999988754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=102.26 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=71.3
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|.++..++.. .++++|+++.++..+. +.+.+.+. ++.+...++..++ ..++||+|+|.. +.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 558999999999988887643 4899999887664433 33333444 4677777877764 357899999865 32
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+...+++.+.++|+|||.+++...
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 346788999999999999998753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.4e-10 Score=107.54 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~ 159 (506)
+.+.+.+.+.+.++....++.+|||+|||+|.++..++.. .++++|+++.++..+..+... .+. .+.+.+.+...
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECChhh
Confidence 3445555666666421234569999999999999999876 488999988777555544332 222 46777777776
Q ss_pred CCCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEE
Q 010599 160 MPYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++ ++||+|++..+++|+.. +...+++++.+++++++++.+.
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 65 78999999988878653 2368899999999988776654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=111.55 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=94.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++.++..+..... ..++...+...|... ...+
T Consensus 186 ~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~~~ 260 (342)
T PRK09489 186 QLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DIKG 260 (342)
T ss_pred HHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--ccCC
Confidence 34455553222 237999999999999999875 48899998877765554443 345555555555433 2357
Q ss_pred CeeEEEEcCcccccCC----ChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceee
Q 010599 166 AFDMAHCSRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~ 241 (506)
.||+|+|+..+|.... ....++.++.+.|||||.|+++.+.. +. + . ..+++.... .+.
T Consensus 261 ~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~--l~-y------~-------~~l~~~Fg~--~~~ 322 (342)
T PRK09489 261 RFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF--LP-Y------P-------DLLDETFGS--HEV 322 (342)
T ss_pred CccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC--CC-h------H-------HHHHHHcCC--eEE
Confidence 8999999988754221 12689999999999999999987543 11 0 0 123333322 467
Q ss_pred ccccCceEEEEecC
Q 010599 242 KSEKGEIAVWQKKV 255 (506)
Q Consensus 242 ~~~~~~~~i~~kp~ 255 (506)
+.+++.+.||+-..
T Consensus 323 la~~~~f~v~~a~~ 336 (342)
T PRK09489 323 LAQTGRFKVYRAIM 336 (342)
T ss_pred EEeCCCEEEEEEEc
Confidence 77788888887543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=102.50 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=85.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-----cceeccccccCCCCC-CceeEEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-----IGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-----~~~~~~~~~~~~~~p-~s~D~v~~ 421 (506)
+..+|||+|||+|.++..|+..+ .+|+++|.+++|+..+.++ ++ .....++.+ .++ .+||+|.+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEE
Confidence 45679999999999999998874 6899999999999988554 21 112222222 233 58999998
Q ss_pred cccccccc------------------CCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEee
Q 010599 422 HGLFSLYK------------------DKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 422 ~~~~~~~~------------------~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~ 478 (506)
+..+.... ....+..++.++.++|||||.+++.... ...+.+.+++...+|++....
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 76553211 0112467899999999999998885432 235678889999999866543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=105.53 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=103.1
Q ss_pred CCeEEcCCCCCCChhhH-HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH
Q 010599 69 GNVFRFPGGGTQFPQGA-DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA 143 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~-~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a 143 (506)
+..+.|.+....|+.+. +.=.+.+++.++..... +|||+|||.|.++..|++. .++-+|++...+..+..+.+
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 44455555555555444 44445567777544333 8999999999999999986 47788887654443333333
Q ss_pred HHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh----HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCC
Q 010599 144 LERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND----GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRP 219 (506)
Q Consensus 144 ~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~ 219 (506)
.++++......+....+..+ +||+|+|+.-+|.=..-. .+++.+..+.|++||.|.++.... +.
T Consensus 204 -~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~--l~-------- 271 (300)
T COG2813 204 -ANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH--LP-------- 271 (300)
T ss_pred -HcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC--CC--------
Confidence 34455423333444445555 999999998775311111 388999999999999999997632 11
Q ss_pred hHHhHHHHHHHHHHHHhcceeeccccCceEEEEec
Q 010599 220 KEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKK 254 (506)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~i~~kp 254 (506)
....|+++... -+.+.+++...|++-.
T Consensus 272 ------y~~~L~~~Fg~--v~~la~~~gf~Vl~a~ 298 (300)
T COG2813 272 ------YEKKLKELFGN--VEVLAKNGGFKVLRAK 298 (300)
T ss_pred ------hHHHHHHhcCC--EEEEEeCCCEEEEEEe
Confidence 11234444332 5667777778877653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=112.71 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM--PYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~l--p~~~~sfDlV~~~~ 174 (506)
.+..+||||||+|.++..++.+ .++|+|+++.++..+..+.. ..++ ++.+...|+..+ .++++++|.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~-~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE-LLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH-HcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3458999999999999999976 58999999877766654443 4444 466677777544 57889999999976
Q ss_pred cccccCCCh------HHHHHHHHHhcCCCeEEEEEcC
Q 010599 175 CLIPWGAND------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~~~~~~~------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. +|.... ..++.++.|+|+|||.+.+.+.
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 53 664433 4799999999999999999864
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=101.80 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=99.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc--eeccccccCCCCCCceeEEEEcccc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG--IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~--~~~~~~~~~~~~p~s~D~v~~~~~~ 425 (506)
+.....+-|||||||+|--+..|.+.+ ...+++|+|+.||++|.+|-+-+ ...+..+.+|+-|+|||-|.+-+++
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 444457789999999999999999877 67899999999999999874422 3445678899999999999887777
Q ss_pred ccccC---CC-----CHHHHHHHHhhcccCCcEEEEEe---ChhhHHHHHHHHhcCCceEE-EeecCCCCCCCeEEEEE
Q 010599 426 SLYKD---KC-----NIEDILLEMDRILRPEGAIIIRD---EVDEIIKVKKIVGGMRWDTK-MVDHEDGPLVPEKILVA 492 (506)
Q Consensus 426 ~~~~~---~~-----~~~~~l~e~~RvLrPgG~~ii~d---~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~l~~ 492 (506)
.++-| .+ .+..++.-++.+|++|+..++.= ..+.++.|..-+.+.++.-. ++|.-.+...+.++|+.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 64322 11 12246777999999999999953 33455566665666665422 33332233334444444
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=104.05 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=80.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+........ ....+.+...+...++++.
T Consensus 29 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 29 RRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCC
Confidence 4445555322 4569999999999999888765 46778887644433322221 1234567777888888878
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++||+|+++.++++ ..++..+++++.++|+|||++++..
T Consensus 105 ~~~D~i~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 105 NSFDAVTIAFGLRN-VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CcEEEEEEeeeeCC-cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 89999999988866 4567899999999999999999865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=111.63 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=91.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEcccccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~ 429 (506)
.+|||+|||+|.++..+.+.. ....|+++|.++.|+..+.+. ++...+. +...++..++.||+|.|+.-|+...
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 469999999999999998753 235799999999999988653 3322211 1222333468999999998887432
Q ss_pred CC--CCHHHHHHHHhhcccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 430 DK--CNIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 430 ~~--~~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.. ...+.++.++.|.|||||.|+|.. .+++...+++.+... ++.. +. .+.+++.|+|
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~ 336 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIM 336 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEc
Confidence 21 235689999999999999998843 456777777776543 3222 21 3678888876
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-10 Score=105.89 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=82.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-----CCC-CceeEEEEc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-----TYP-RTYDLIHAH 422 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-----~~p-~s~D~v~~~ 422 (506)
...|||+|||+|.++..|+... ...+|+++|.+++|+..|.++ ++ ..+...+.++. .++ +++|.|+++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4579999999999999998753 236899999999999987654 22 22222223321 144 699999985
Q ss_pred ccccc-----ccCCCCHHHHHHHHhhcccCCcEEEEE-eChhhHHHHHHHHhcCC-ceE
Q 010599 423 GLFSL-----YKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMR-WDT 474 (506)
Q Consensus 423 ~~~~~-----~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~-w~~ 474 (506)
.-..+ ..++...+.+|.++.|+|||||.|++. |...+.+.+.+.+.... |+.
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 43221 112333467999999999999999985 55556666666655444 664
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=103.44 Aligned_cols=107 Identities=14% Similarity=0.056 Sum_probs=75.4
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
....+.+.+... ++.+|||||||+|..+..+++. .++++|+++.++..+..++ ...+.. +.+...|....
T Consensus 60 ~~~~~~~~l~~~--~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 60 MVAMMCELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHhcCCC--CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccC
Confidence 445566666433 3458999999999999888753 4889999886665444333 333432 56667777654
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
....++||+|++..++.++ ..++.+.|+|||+|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 4456789999998876543 257889999999999864
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-10 Score=107.23 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
.+.+|||||||+|.++..|++. .++++|+++.++..+..... . ....+.+.+...+++++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-~--~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-R--PGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-c--CCCeEEEEecccccccCCCccEEEEC
Confidence 4468999999999998888641 47888887765544332211 1 22344455666677778899999999
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010599 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
.+++|+.++. ..+++++.|+++ |.+++.
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 9998875432 579999999998 444444
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=109.87 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=75.4
Q ss_pred HHHHHHHHhhCCCC-CCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc-----CCCeEEEEecc
Q 010599 86 DKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGT 157 (506)
Q Consensus 86 ~~~~~~i~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~-----~~~~~~~~~d~ 157 (506)
+..++.+.+++... ..++.+|||||||+|.++..|++++ ++++|+|+.++..+..+..... .....+...|.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 44445555555322 1235699999999999999999874 8899999887766554433220 12345555555
Q ss_pred ccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 158 IKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..+ +++||+|+|..+++|+.++. ..+++.+.+ +.+||.++ +..+
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p 251 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAP 251 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCC
Confidence 433 57899999999998875543 345666664 45666544 4433
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-10 Score=111.26 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=80.2
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEe
Q 010599 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVL 155 (506)
Q Consensus 79 ~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~ 155 (506)
-.|+.|...-....++++.....++.+|||+|||+|.++...++.| +.++|++|.-+ +++.++++.++++......
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAK 217 (300)
T ss_pred cccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcc
Confidence 3466666544444444443223466799999999999888887763 88999988655 4444566666666311111
Q ss_pred ccccCCCCC-CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 156 GTIKMPYAS-RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~lp~~~-~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
....+..+. +.||+|+++-.... ...+..++.+.|||||++++|+
T Consensus 218 ~~~~~~~~~~~~~DvIVANILA~v----l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 218 GFLLLEVPENGPFDVIVANILAEV----LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cccchhhcccCcccEEEehhhHHH----HHHHHHHHHHHcCCCceEEEEe
Confidence 122223333 58999999863211 2688999999999999999996
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=105.28 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=73.5
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEe
Q 010599 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL 155 (506)
Q Consensus 79 ~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~ 155 (506)
..|+.+.........+.+......+.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...++.....
T Consensus 96 ~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~-- 172 (250)
T PRK00517 96 MAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY-- 172 (250)
T ss_pred CccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE--
Confidence 345555544333333333211234569999999999988887765 388999988766544433 33334321111
Q ss_pred ccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 156 GTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 156 d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++..+.+||+|+++.... ....++.++.++|||||++++++.
T Consensus 173 ----~~~~~~~fD~Vvani~~~----~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 173 ----LPQGDLKADVIVANILAN----PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ----EccCCCCcCEEEEcCcHH----HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 122223799999975321 136789999999999999999854
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=104.24 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=81.4
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCC
Q 010599 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-YASR 165 (506)
Q Consensus 89 ~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp-~~~~ 165 (506)
++.+...+. ..++.+|||||||+|.++..+++. .++++|+++..+..+.... ...+....+...+....+ ..++
T Consensus 37 ~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 37 LNYIREHAG--GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHhcc--CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCC
Confidence 444555543 234568999999999999988876 4788888775554333222 223445556666665554 3457
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+++.+++|. .++..+++.+.++|+|||.++++.+.
T Consensus 114 ~fD~Ii~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 114 QFDVVTCMEMLEHV-PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CccEEEEhhHhhcc-CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 89999999988774 56788999999999999999998654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=100.99 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=79.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC----------C-CCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST----------Y-PRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~----------~-p~s~D~v~~ 421 (506)
..+|||+|||||.++..+++.......|+++|.++ |... .++ ...+.++.. + +.+||+|.|
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v----~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGV----DFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCc----EEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 45899999999999998887543335899999985 4321 121 111222222 3 378999999
Q ss_pred ccccccccCCC-C-------HHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcC--CceEE-EeecC-CCCCCCeEE
Q 010599 422 HGLFSLYKDKC-N-------IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM--RWDTK-MVDHE-DGPLVPEKI 489 (506)
Q Consensus 422 ~~~~~~~~~~~-~-------~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~--~w~~~-~~~~~-~~~~~~~~~ 489 (506)
+.+........ + .+.+|.++.|+|||||.|+|..-.. +.+.+++..+ .|... +..-. .-..+.|.+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~ 201 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 201 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeE
Confidence 76554332211 1 2469999999999999999965332 1222222222 33322 22111 112257889
Q ss_pred EEEEe
Q 010599 490 LVAVK 494 (506)
Q Consensus 490 l~~~k 494 (506)
++|+.
T Consensus 202 ~~~~~ 206 (209)
T PRK11188 202 IVATG 206 (209)
T ss_pred EEeec
Confidence 98864
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=105.19 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=78.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcc----cHHHHHhc-Cccceecccccc--CCCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN----TLGVIYER-GLIGIYHDWCEA--FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~----~l~~~~~r-g~~~~~~~~~~~--~~~~p~s~D~v~~~~ 423 (506)
.+-.+|||+|||+|.++.+|++.-.....|+++|.+++ |+.++.+| .+.....+.... +.....+||+|+++.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 34468999999999999999985322247999999975 56677665 333343332111 111237899999855
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEE------eChh-----hHHHHHHHHhcCCceEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR------DEVD-----EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~------d~~~-----~~~~~~~~~~~~~w~~~ 475 (506)
. +......++.++.|+|||||.|+|. |... +.+++ +.+++.+++..
T Consensus 211 a-----~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~ 267 (293)
T PTZ00146 211 A-----QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPK 267 (293)
T ss_pred C-----CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceE
Confidence 3 2334456778999999999999993 2211 11234 56788788744
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=103.41 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=81.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHH-cCCCeEEEEeccccCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~-~~~~~~~~~~d~~~lp~~ 163 (506)
..+...+... ++.+|||+|||+|.++..++.. .++++|+++..+..+....... ...++.+...+...++++
T Consensus 41 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLGVR--PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhCCC--CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 3444444332 3458999999999998888754 4788888876554444333221 123466777788788877
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++||+|+++.+++++ .+...++.++.++|+|||.+++..
T Consensus 119 ~~~~D~I~~~~~l~~~-~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 119 DNSFDAVTIAFGLRNV-PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCCccEEEEecccccC-CCHHHHHHHHHHhccCCcEEEEEE
Confidence 7899999999888664 567899999999999999998864
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.8e-09 Score=97.42 Aligned_cols=105 Identities=17% Similarity=0.032 Sum_probs=72.4
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASR 165 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~ 165 (506)
.+.+.+... .+.+|||+|||+|.++..++++ .++++|+++.++..+..+... .+. .+.+...+.. .++ .+
T Consensus 22 ~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 22 LALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-FGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCeEEEecCch-hhc-Cc
Confidence 344555433 3458999999999999988764 488999988766554433332 333 3455544442 233 35
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|++..... ....++.++.++|+|||++++..
T Consensus 97 ~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 97 KADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 799999976542 24678999999999999999864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=100.07 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=74.1
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010599 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+....+...|....+ .++||+|+++..+++...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 47999999999999999887 37899998876655544433 34455666666665443 458999999987755432
Q ss_pred C--------------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 182 N--------------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 182 ~--------------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
. ...++.++.++|||||.+++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 1 146799999999999999998643
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=111.05 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=81.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCC-CceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYP-RTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p-~s~D~v~~~~ 423 (506)
...+||||||+|.++..|+... ...+++++|.++.|+..|.++ |+ ..+...+.+. ..++ +++|.|+++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4579999999999999998763 346999999999998877655 33 1222222222 2344 8999999853
Q ss_pred cccccc--C-CCCHHHHHHHHhhcccCCcEEEE-EeChhhHHHHHHHHhcC-CceE
Q 010599 424 LFSLYK--D-KCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 424 ~~~~~~--~-~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~-~w~~ 474 (506)
-..+.. | |-..+..|.|+.|+|||||.+.| +|..++.+.+.+.+... +++.
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 332211 1 11226899999999999999999 56666776666665444 4443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.7e-10 Score=110.05 Aligned_cols=121 Identities=23% Similarity=0.270 Sum_probs=81.6
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEE
Q 010599 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG 153 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~ 153 (506)
.+..|+.|.+.-....++++.....++.+|||+|||+|.++...+.. .|.++|++|..+ +.+.+++..+++...+.
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIE 214 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEE
T ss_pred CCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEE
Confidence 44678888866665555555322344569999999999888777765 489999998655 44555666677766554
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 154 VLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+..... ...+.||+|+++-.... ...++..+.+.|+|||+|++|+
T Consensus 215 v~~~~~--~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 215 VSLSED--LVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp ESCTSC--TCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEE
T ss_pred EEEecc--cccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEcc
Confidence 432222 33589999999864322 2578888999999999999996
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.9e-10 Score=105.84 Aligned_cols=122 Identities=10% Similarity=0.099 Sum_probs=86.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh-cCccc--------------eeccccccCCCCC----
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-RGLIG--------------IYHDWCEAFSTYP---- 413 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~-rg~~~--------------~~~~~~~~~~~~p---- 413 (506)
..+|||+|||.|..+..|+++| .+|+++|.|+.+++.+++ .++.. .+...+.++..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4589999999999999999987 689999999999997544 34311 1223455554444
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE---e-Ch-----h---hHHHHHHHHhcCCceEEEeec
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR---D-EV-----D---EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~---d-~~-----~---~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.+||+|....+|.++. ...-+..+..|.+.|||||++++. . .. + ..++|.+++. -.|++...+.
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 5799999888887553 334467999999999999975552 1 11 1 3466777664 3577665543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=92.56 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=68.9
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCCCceeEEEEc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p~s~D~v~~~ 422 (506)
....+|||+|||+|.++..+++.. ...+|+++|.++.+++.+.+. ++. .+.....+ ++..+.+||.|.+.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEEC
Confidence 334589999999999999998752 126899999999999987653 221 12111222 22234799999985
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.... ....++.++.|+|||||+|++.
T Consensus 96 ~~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 4332 3468999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=100.12 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=77.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc------CCCCC-CceeEEEEccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA------FSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~------~~~~p-~s~D~v~~~~~ 424 (506)
+..+|||+|||+|+++..+.+.......|+++|.++.+ ...++.....+..+. ...++ ++||+|.++..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 34689999999999988887643223479999999654 111221111121110 00134 78999998643
Q ss_pred cccccCC--------CCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeec-CCCCCCCeEEEEEE
Q 010599 425 FSLYKDK--------CNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDH-EDGPLVPEKILVAV 493 (506)
Q Consensus 425 ~~~~~~~--------~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~l~~~ 493 (506)
.+....+ +.++.+|.++.++|||||++++.... ....++-..++..-|.+.+... ..-..+.|++++|.
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 2211111 12467999999999999999994322 2222233322222244443221 12222468888885
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=102.49 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=73.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCCCceeEEEEcccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~ 427 (506)
+..+|||+|||+|.++..|++.+ ..|+++|.+++|+..|.++- +...++....+++..+++||+|++..+|.|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 45689999999999999998875 35999999999999998762 111233333456555689999999999876
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.. ...+..++.++.+++++++.+.+
T Consensus 140 ~~-~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 140 YP-QEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CC-HHHHHHHHHHHHhhcCCeEEEEE
Confidence 43 23567899999998876665554
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=101.81 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=75.6
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM 160 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~l 160 (506)
.....+.+.+... ++.+|||||||+|+++..+++. .++++|+++.++..+..+.. ..+. ++.+...|....
T Consensus 63 ~~~~~~~~~l~~~--~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcccC
Confidence 3445566666443 3459999999999999888754 48899998866654443333 3333 467777777665
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.+.||+|++.....+ ....+.+.|||||.|++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 556688999999765533 2356778999999999864
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.9e-08 Score=95.75 Aligned_cols=142 Identities=16% Similarity=0.215 Sum_probs=94.6
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEE
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIH 420 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~D~v~ 420 (506)
+..+......+|||+|||+|.++..|++..- ...++-+|.+...++.|++- ++-+.......-++...+.||+|.
T Consensus 151 l~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~Ii 229 (300)
T COG2813 151 LETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLII 229 (300)
T ss_pred HHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEE
Confidence 3333333334899999999999999998642 56899999998788877653 222211111222333347999999
Q ss_pred EccccccccCCCC--HHHHHHHHhhcccCCcEEEEEe--ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 421 AHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 421 ~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
|+-=|+.-..... -..++.+-.+-|++||.|+|-- .+++...|++++. ++..+... ...+|+-++|.
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~ 300 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA 300 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence 9888873332211 2368899999999999888843 4557888888776 44444333 36888888773
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=103.93 Aligned_cols=127 Identities=12% Similarity=0.162 Sum_probs=93.2
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHH--HHhcCc--cceecc---ccccCCCCCC
Q 010599 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV--IYERGL--IGIYHD---WCEAFSTYPR 414 (506)
Q Consensus 342 ~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~--~~~rg~--~~~~~~---~~~~~~~~p~ 414 (506)
..+.+.+..-..++|||||||.|.++..|+..|. ..|+++|.+...+-. +.++-+ -...+. --|.+|. .+
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 3444556566788999999999999999998763 579999987554432 222211 111111 1245555 58
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC------------------------hhhHHHHHHHHhcC
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE------------------------VDEIIKVKKIVGGM 470 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~------------------------~~~~~~~~~~~~~~ 470 (506)
+||+|+|.+||= |+-++...|.++...|||||.||+-.. ++.+..|+..++++
T Consensus 182 ~FDtVF~MGVLY---Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~ 258 (315)
T PF08003_consen 182 AFDTVFSMGVLY---HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERA 258 (315)
T ss_pred CcCEEEEeeehh---ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHc
Confidence 999999999998 677999999999999999999998211 23778899999999
Q ss_pred CceE
Q 010599 471 RWDT 474 (506)
Q Consensus 471 ~w~~ 474 (506)
+++-
T Consensus 259 gF~~ 262 (315)
T PF08003_consen 259 GFKD 262 (315)
T ss_pred CCce
Confidence 9973
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=107.83 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=89.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCCCceeEEEEccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~ 428 (506)
..+|||+|||+|-++-+-++.|. ..|+++|.++..++.|.+-. +-..+. +..........||+|.|+-...
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~~~~~~~~~~~dlvvANI~~~-- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-VSLSEDLVEGKFDLVVANILAD-- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-ESCTSCTCCS-EEEEEEES-HH--
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-EEEecccccccCCEEEECCCHH--
Confidence 35899999999999877777653 47999999999999887753 211111 1111111239999999944333
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
-+...+..+.+.|+|||+||++--+. ..+.+.+.+++ +|++.....+ +.+..|+++|+
T Consensus 237 ----vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 ----VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp ----HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred ----HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 34568888999999999999986554 56777777877 9997655444 37999999986
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=100.03 Aligned_cols=117 Identities=20% Similarity=0.284 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~ 157 (506)
.....+++.+.+.+. ..+.+|||+|||+|.++..+++. .++++|+++..+..+... +...+.. +.+...+.
T Consensus 71 ~~~~~l~~~~l~~~~---~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 71 PDTEELVEAALERLK---KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN-AARLGLDNVTFLQSDW 146 (251)
T ss_pred CChHHHHHHHHHhcc---cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECch
Confidence 344666666666663 23348999999999999999875 588999988766544433 3334443 66666666
Q ss_pred ccCCCCCCCeeEEEEcCccccc------CCC-------------------hHHHHHHHHHhcCCCeEEEEEc
Q 010599 158 IKMPYASRAFDMAHCSRCLIPW------GAN-------------------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~------~~~-------------------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. ++++++||+|+|+..+... ..+ ...++.++.++|+|||.+++..
T Consensus 147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44 4567899999997544311 000 0256889999999999999975
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-09 Score=104.12 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=95.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcccee----ccccccCCCCC--CceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY----HDWCEAFSTYP--RTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~----~~~~~~~~~~p--~s~D~v~~~~~~ 425 (506)
+.++|||+|||+|-++-+.++-|. ..|+++|..+..+++|++.-....+ +.-+-.....+ +.||+|.|+= +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 578999999999999988888763 5799999999999999885321111 11111112223 5999999922 1
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
- .-+..+..++.+.|||||++|++--+. ..+.+.+.+.+-+|++..+... +.+..++.+|+
T Consensus 239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~----~eW~~i~~kr~ 300 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER----EEWVAIVGKRK 300 (300)
T ss_pred H-----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec----CCEEEEEEEcC
Confidence 1 124568889999999999999987654 5677888898999997755444 36888888774
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=99.73 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=83.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecc-ccCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMPY 162 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~-~~lp~ 162 (506)
.+..+.-++++.++.....-|||||||+|..+..|.+.+ ++++|||+.|++.++. +-+...+...|+ +.+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCC
Confidence 344556667776666566789999999999999998875 7888998887765553 222223334444 78999
Q ss_pred CCCCeeEEEEcCcccccCC-------Ch----HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 163 ASRAFDMAHCSRCLIPWGA-------ND----GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~-------~~----~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..++||.|++..++ +|.- ++ ..++..++.+|++|+..++...+.
T Consensus 109 rpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 RPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 99999999986654 4321 12 267888999999999999985443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-09 Score=107.44 Aligned_cols=120 Identities=12% Similarity=0.122 Sum_probs=83.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc--------ceeccccccCCCCCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI--------GIYHDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~--------~~~~~~~~~~~~~p~s~D~v~~~~~ 424 (506)
..+|||+|||+|.++..|.+.+ .+|+++|.|++|++.+.++.-. ......+.+++..+++||+|.|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4589999999999999999875 5899999999999999887321 1111223455556789999999999
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------h---hHHHHHHHHhcCCceEEEe
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------D---EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~---~~~~~~~~~~~~~w~~~~~ 477 (506)
+.|+.. .....++..+.+ +.+||.++..... . ..+++++++++.+|++...
T Consensus 222 L~H~p~-~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 222 LIHYPQ-DKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred EEecCH-HHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 886542 234456666665 4566554432110 0 2577888888889986643
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=101.84 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=68.2
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEccccccccCCC
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~D~v~~~~~~~~~~~~~ 432 (506)
.+|||+|||+|.++..|++.. ..+++++|.+++|+..+.++++.....+..+.++.++ ++||+|.++++|+|..
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 479999999999999997643 2367899999999999988775322222222233344 8999999999998554
Q ss_pred CHHHHHHHHhhcccCC
Q 010599 433 NIEDILLEMDRILRPE 448 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPg 448 (506)
++..+|.||.|+++++
T Consensus 90 d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 NPEEILDEMLRVGRHA 105 (194)
T ss_pred CHHHHHHHHHHhCCeE
Confidence 6888999999988764
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.8e-09 Score=100.18 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=74.4
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C---cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N---VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~---v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp 161 (506)
....+.+.+... ++.+|||||||+|.++..|++. . |+++|+++.++..+.. ...+.+. ++.+...|.....
T Consensus 65 ~~~~~~~~l~~~--~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~-~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELK--PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAER-RLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCC--CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCeEEEECCcccCC
Confidence 334566666443 4459999999999999988875 2 8899998866654443 3333444 4666666765544
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.....||+|++.....+ +...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 34568999998765433 3466889999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=102.24 Aligned_cols=112 Identities=25% Similarity=0.337 Sum_probs=74.6
Q ss_pred HHHHHHHHhhCCC-CCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010599 86 DKYIDQLASVIPI-KNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
....+.+.+.++. ...++.+|||||||+|.++..|++. .++++|+++.++..+...... .+. .+.+...+ +
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~ 121 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---L 121 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---c
Confidence 3334445555432 1123458999999999999999876 488899988777655544333 222 35555555 4
Q ss_pred CCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEE
Q 010599 161 PYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li 201 (506)
+..+++||+|++..+++|+.... ..+++++.+.+++++.+.
T Consensus 122 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 44568899999999988865433 678888888775544433
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-09 Score=101.93 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC-CCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA-SRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~-~~sfDlV~~~~~l~ 177 (506)
.+.+|||+|||+|.++..+++. .++++|+++.++..+..+... .+. ...+...+...++.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 3568999999999999988775 478888877665544433332 334 466666776666544 47899999999886
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+ ..++..+++++.++|+|||.++++...
T Consensus 124 ~-~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 H-VPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred h-CCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 6 466789999999999999999987653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=101.20 Aligned_cols=97 Identities=14% Similarity=0.230 Sum_probs=73.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCC-CCceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~-p~s~D~v~~~~~~ 425 (506)
..+|||+|||+|.++..+++.+ ..++++|.++.++..+.++ +. +.....-.+.++.. +++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999999888765 4599999999999988775 22 11111111222222 4799999998888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++ ..++..+|.++.++|+|||.+++.+
T Consensus 123 ~~---~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EH---VPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred Hh---CCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 84 4577889999999999999999865
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=102.74 Aligned_cols=102 Identities=9% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCChhHHHHhh--C----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWS--R----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~--~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
.+++|+|||||.|.++..+.. . .++++|+++..+..+........++ .+.|...|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 456899999998865544332 2 3889999887665555444332332 4778888877654335689999998
Q ss_pred CcccccC-CChHHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++|. .++..+++.+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 566999999999999999999976
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-09 Score=103.81 Aligned_cols=122 Identities=11% Similarity=0.120 Sum_probs=86.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH-hcCccc--------------eeccccccCCCC---C-
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY-ERGLIG--------------IYHDWCEAFSTY---P- 413 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~-~rg~~~--------------~~~~~~~~~~~~---p- 413 (506)
..+|||+|||.|..+..|+++| .+|+++|.|+..++.++ ++++.. .++.++.++..+ +
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 3589999999999999999987 58999999999999754 455421 223344555444 2
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE-E-----eCh------hhHHHHHHHHhcCCceEEEeec
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII-R-----DEV------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii-~-----d~~------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.+||+|+-..+|.++. ...-...+..|.++|||||++++ . +.. -..++|.+++.. +|++.....
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEeee
Confidence 6899999888887554 33446799999999999997554 1 111 145777777753 388665443
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-09 Score=100.60 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=67.9
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C--CCceeEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y--PRTYDLIH 420 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~--p~s~D~v~ 420 (506)
+......+|||+|||+|.+++.|++.-.....|+++|.+++|++.|.++ ++...++....++.. + ..+||+|+
T Consensus 68 l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 68 IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 3334456899999999999988876411124799999999999988764 322112222223221 2 27999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++.++.+ +..|+.|+|||||+|++-.
T Consensus 148 ~~~~~~~---------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 148 VTAAAST---------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EccCcch---------hhHHHHHhcCcCcEEEEEE
Confidence 9766542 3358899999999999854
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=104.81 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=81.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~s 166 (506)
..+.++.... ++.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+.. +.+...|+.++|+++++
T Consensus 172 ~~~~~l~~~~--~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~-~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 172 RAMVNLARVT--EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE-HYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHhCCC--CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH-HhCCCCCeEEecchhcCCcccCC
Confidence 3444444333 3458999999999988776654 58899998877765554433 33333 46777888899988889
Q ss_pred eeEEEEcCcccc---cCC----C-hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 167 FDMAHCSRCLIP---WGA----N-DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 167 fDlV~~~~~l~~---~~~----~-~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
||+|+++..+.. ... + ...++.++.++|||||++++..|..
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999999743211 001 1 2689999999999999999987644
|
This family is found exclusively in the Archaea. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=97.78 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...+..+.+...|... .+++++||+|+++..+.+-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 458999999999999988875 47899998866644433 333345556666666544 3456799999998543221
Q ss_pred CCC--------------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 180 GAN--------------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 180 ~~~--------------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
... ...++.++.++|||||.+++..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 110 135778899999999999986543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.3e-09 Score=104.21 Aligned_cols=114 Identities=10% Similarity=0.108 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-CCCeEEEEecccc-C
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIK-M 160 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~-l 160 (506)
..+.|++.++ ++.+|||+|||+|..+..|++. .++++|+|+.|+..++.+..... ++++...++|... +
T Consensus 53 ~~~~ia~~~~----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 53 HADEIAAATG----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHhhC----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 3344555552 3458999999999999888765 48899999988877666554432 3455666777754 4
Q ss_pred CCCCC----CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010599 161 PYASR----AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~----sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++.. ...++++..++.++.++. ..+|+++.++|+|||.|++...
T Consensus 129 ~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 129 ALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred hhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44332 233444445555554322 6899999999999999999754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-09 Score=107.13 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=75.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~v~~ 421 (506)
.+...+.++|||||||+|.++..+.++. ...+++.+|. +.+++.+.++ |+...+...+.++-..+ ..+|+|.+
T Consensus 144 ~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~ 221 (306)
T TIGR02716 144 EAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLF 221 (306)
T ss_pred HcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEe
Confidence 3444566799999999999999998763 2367899998 4899887654 44333334445543222 34799988
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++++++. ......+|.++.|+|||||+++|.|.
T Consensus 222 ~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 222 CRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 88776433 12346799999999999999999763
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.9e-09 Score=99.63 Aligned_cols=98 Identities=14% Similarity=0.260 Sum_probs=74.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecc-ccccCC-CCCCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHD-WCEAFS-TYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~-~~~~~~-~~p~s~D~v~~~~~~ 425 (506)
+...|||||||+|.++..+.+.+ .+++++|.+++++..+.++ +....++. -.+.++ ..+..||+|+++.+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45579999999999999998865 5799999999999988765 22111111 011222 123899999999888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+. .++..+|.++.++|+|||.+++.+
T Consensus 125 ~~~---~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 125 EHV---PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hcc---CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 844 467889999999999999999975
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-09 Score=101.56 Aligned_cols=97 Identities=16% Similarity=0.062 Sum_probs=68.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--CceeEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTYDLIH 420 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~D~v~ 420 (506)
+...+..+|||+|||+|.+++.|++.......|+++|.++++++.|+++ |+ ..+...+.+... ++ ..||+|+
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEE
Confidence 3344566899999999999999987532224699999999999988765 32 222233333322 22 6899999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++... ..+..++.+.|||||++++.
T Consensus 152 ~~~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 152 VTAAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EcCCc---------ccccHHHHHhcCcCcEEEEE
Confidence 85433 23456788999999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=98.78 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=70.9
Q ss_pred hCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCC
Q 010599 95 VIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRA 166 (506)
Q Consensus 95 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~s 166 (506)
.++..+ +.+|||+|||+|.++..|++. .|.++|+++.++.... +.+.++ .++.+...|... .++. .+
T Consensus 67 ~l~i~~--g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 67 NFPIKK--GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hCCCCC--CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-cc
Confidence 454443 459999999999999999875 3899999987775443 344433 345555666643 1223 56
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|++.... ......++.++.|+|||||+|+++.+
T Consensus 142 ~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 142 VDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999974321 11124568999999999999999754
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-09 Score=100.26 Aligned_cols=102 Identities=19% Similarity=0.113 Sum_probs=69.7
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CC-C-Cce
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TY-P-RTY 416 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~-p-~s~ 416 (506)
++..+...+..+|||+|||+|.+++.|+........|+++|.+++|++.+.++ |+ ..+...+.+.. .+ + ..|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCc
Confidence 33334444567899999999999988876422235899999999999988875 22 11222233332 22 2 789
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|++...+. .+..++.+.|||||.+++--
T Consensus 147 D~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGP---------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCcc---------cchHHHHHhhCCCcEEEEEE
Confidence 9999965543 23456778999999999953
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-09 Score=91.97 Aligned_cols=101 Identities=23% Similarity=0.383 Sum_probs=70.6
Q ss_pred CEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010599 104 RTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
.+|||+|||+|.++..+++. .++++|+++.-+.-+...... .+ .+..+.+.|..... +++++||+|+++..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 48999999999999888865 478888877543333322222 22 35788888886664 778999999998766
Q ss_pred cccCCC-------hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 177 IPWGAN-------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~~-------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...... ...+++++.++|||||.+++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 432111 14789999999999999998764
|
... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=92.23 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~---~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..++.+ .++++|+++.++..+..+.. ..+.. +.+...|... ++.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK-LNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH-HcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 3458999999999999999876 58889998866654443332 23332 5566666543 3455689999997654
Q ss_pred cccCC----------------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 177 IPWGA----------------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~----------------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+..+ + ...+++++.++|||||.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 33110 0 14579999999999999988764
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=103.30 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=76.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~ 163 (506)
+.+.+.+.. .+..+|||||||+|.++..++++ .++++|+ +.++..+ .+.+.+.+. .+.+...|....+++
T Consensus 139 ~~l~~~~~~--~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a-~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKL--DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLV-NENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCC--CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHH-HHHHHhCCccceEEEEecCccCCCCC
Confidence 334444433 33459999999999999999876 3667776 3333222 233334444 356677777665665
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +|+|+++.++++|.++. ..+++++.++|||||.+++..
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 69999999988876543 679999999999999999975
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-08 Score=92.37 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=78.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCCCceeE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYPRTYDL 418 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p~s~D~ 418 (506)
.+......+|||+|||+|.++..++... ....|+++|.+++|++.+.++ ++ ..++..+.+. +.....+|.
T Consensus 35 ~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 35 QLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDR 112 (196)
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCE
Confidence 3444445689999999999988886531 125899999999999988764 32 1222222222 222234676
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcC---CceEE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGM---RWDTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~---~w~~~ 475 (506)
++.. ....++.+|.++.|+|||||++++.... +...++.+.++.+ +|++.
T Consensus 113 v~~~-------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
T PRK07402 113 VCIE-------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVV 166 (196)
T ss_pred EEEE-------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEE
Confidence 6552 1235788999999999999999997654 2444455556554 45543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=96.45 Aligned_cols=101 Identities=24% Similarity=0.283 Sum_probs=69.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-C-CCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-M-PYAS 164 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~-l-p~~~ 164 (506)
+.+.+.++ ++.+|||||||+|.++..+++. .++++|+++. +++.+..+++ .+.+.++.. + ++++
T Consensus 5 ~~i~~~i~----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~-----~i~~a~~~~~--~~~~~d~~~~l~~~~~ 73 (194)
T TIGR02081 5 ESILNLIP----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD-----GVLACVARGV--NVIQGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHhcC----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH-----HHHHHHHcCC--eEEEEEhhhcccccCC
Confidence 34555552 2348999999999999988764 3567777654 4444444544 444556643 4 4778
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|+|+.+++|+ .++..+++++.|++++ .+++.|
T Consensus 74 ~sfD~Vi~~~~l~~~-~d~~~~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 74 KSFDYVILSQTLQAT-RNPEEILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred CCcCEEEEhhHhHcC-cCHHHHHHHHHHhCCe---EEEEcC
Confidence 899999999999774 6688899999887654 455544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=96.75 Aligned_cols=121 Identities=12% Similarity=0.208 Sum_probs=80.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC-CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p-~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++..++..+. .+|+++|.++.|+..+.++ ++. +...+.++.. ++ ++||+|+++.-+.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhccCCCeeEEEECCCCC
Confidence 35799999999999998887642 4899999999999977664 221 1111233322 33 7999999975333
Q ss_pred cccC------------------CCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEe
Q 010599 427 LYKD------------------KCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 427 ~~~~------------------~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~ 477 (506)
.... ...+..++.++.++|||||.+++.... ....++...+++.+|.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 1110 001456889999999999999984322 23445666667777765543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=91.70 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=75.8
Q ss_pred CEEEEECCCCChhHHHHhhCC----cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 104 RTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~~----v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+|||+|||.|.+...|++.+ .+++|.|+..+.- +.+.|..++.+ +.|.++|+..-.+..+.||+|+--.++.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 389999999999999999873 6778887754433 34556666666 7889999877677788999999643332
Q ss_pred --ccCCC-----hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 178 --PWGAN-----DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 --~~~~~-----~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.+.++ +..++..+.++|+|||+|+++....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 11211 1357888999999999999986433
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-08 Score=100.57 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~ 159 (506)
..+.+++.+.+.++ ++.+|||+|||+|.++..++.. .++++|+|+.++..+..+ +...+.++.+...|...
T Consensus 237 eTE~LVe~aL~~l~----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 237 ETEHLVEAVLARLP----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFD 311 (423)
T ss_pred cHHHHHHHhhhccC----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhc
Confidence 34666666665552 2348999999999999888753 488999998777555443 33445667777777654
Q ss_pred CCCC-CCCeeEEEEcCcccccCC--------------------Ch----HHHHHHHHHhcCCCeEEEEEcC
Q 010599 160 MPYA-SRAFDMAHCSRCLIPWGA--------------------ND----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp~~-~~sfDlV~~~~~l~~~~~--------------------~~----~~~l~e~~rvLkPGG~li~~~p 205 (506)
..++ .++||+|+|+.....-.+ +. ..++.++.+.|+|||.+++...
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3332 458999999865422110 00 2566777889999999998754
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=95.67 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHH------------HHHcCCCeEEEEeccccCCCC---CC
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQF------------ALERGVPAVIGVLGTIKMPYA---SR 165 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~------------a~~~~~~~~~~~~d~~~lp~~---~~ 165 (506)
+.+||+.|||.|.-+.+|+++| |+++|+|+.-+.....+. ...++..+.+.++|...++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 4589999999999999999985 788888876544332211 011345678888999888642 26
Q ss_pred CeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 166 AFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.||+|+-..+++++.++. .++.+.+.++|+|||.+++.+
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 899999988888887665 789999999999999988865
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=83.17 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=70.4
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC-CCCCeeEEEEcCcccccC
Q 010599 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY-ASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~-~~~sfDlV~~~~~l~~~~ 180 (506)
+|||+|||.|.++..++.. .+.++|+++..+................+...+...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999988873 578888876544332211111122345666666655543 567899999999875534
Q ss_pred CChHHHHHHHHHhcCCCeEEEEE
Q 010599 181 ANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 45589999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=95.64 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=98.4
Q ss_pred cCCCCCCChhhHHHHHHHHHhh-CC-CCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC
Q 010599 74 FPGGGTQFPQGADKYIDQLASV-IP-IKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~-l~-~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~ 149 (506)
+-+.|.+|--..+++...+..- .. .......++||||+|.|..+..++.. .|.++++|+.| ...-.++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-----r~rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-----RWRLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-----HHHHHhCCCe
Confidence 4456666665566664443322 11 11124568999999999999999875 68888887654 3444556654
Q ss_pred eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc--CCCCcccchh-cccCChHHhHHH
Q 010599 150 AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG--PPINWKTNYK-AWQRPKEELQEE 226 (506)
Q Consensus 150 ~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~--p~~~~~~~~~-~~~~~~~~~~~~ 226 (506)
+. +..++.-.+.+||+|.|.+++-. ..+|..+|+++.+.|+|+|.+++.. |...+.+.-. .+.++.+.+.-.
T Consensus 139 vl----~~~~w~~~~~~fDvIscLNvLDR-c~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~ 213 (265)
T PF05219_consen 139 VL----DIDDWQQTDFKFDVISCLNVLDR-CDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK 213 (265)
T ss_pred EE----ehhhhhccCCceEEEeehhhhhc-cCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence 22 33334334568999999998855 7788999999999999999999964 5544444433 355554444333
Q ss_pred HHHHHHHHHhc
Q 010599 227 QRKIEEIANLL 237 (506)
Q Consensus 227 ~~~l~~l~~~~ 237 (506)
...+++....+
T Consensus 214 g~~~E~~v~~l 224 (265)
T PF05219_consen 214 GATFEEQVSSL 224 (265)
T ss_pred CCcHHHHHHHH
Confidence 33444444443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=94.96 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=71.8
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCC
Q 010599 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASR 165 (506)
Q Consensus 89 ~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~ 165 (506)
...+.+.+... ++.+|||+|||+|.++..|+.. .++++|+++.++..+...+.. .+. ++.+...+......+.+
T Consensus 67 ~~~l~~~l~~~--~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 67 VARMTELLELK--PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHhcCCC--CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcCC
Confidence 34455555433 3459999999999998877765 588899987655444433332 233 35666666543222347
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||+|++.....+ +..++.+.|+|||.+++...
T Consensus 144 ~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 8999999775533 24667899999999999754
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-08 Score=96.98 Aligned_cols=140 Identities=15% Similarity=0.190 Sum_probs=90.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---CccceeccccccC-CCC-CCceeEEEEccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEAF-STY-PRTYDLIHAHGLFS 426 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---g~~~~~~~~~~~~-~~~-p~s~D~v~~~~~~~ 426 (506)
+..+|||+|||+|.++..|+... ....|+++|.++.+++.+.+. +....+...+.++ ... +++||+|.++--+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 34579999999999999998742 235899999999999988875 2211122222222 222 37999999853221
Q ss_pred cc------c-------C-------C---CCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCC
Q 010599 427 LY------K-------D-------K---CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 427 ~~------~-------~-------~---~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
.. . + . .....++.++.++|||||++++.-.......++.++.+.+|....... |-.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~-d~~ 265 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRK-DLA 265 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEec-CCC
Confidence 00 0 0 0 012468889999999999999965555567788888888886332222 211
Q ss_pred CCCeEEEEEEe
Q 010599 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
+...+++++|
T Consensus 266 -~~~r~~~~~~ 275 (275)
T PRK09328 266 -GRDRVVLGRR 275 (275)
T ss_pred -CCceEEEEEC
Confidence 3556666654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-08 Score=95.04 Aligned_cols=125 Identities=21% Similarity=0.320 Sum_probs=85.0
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-CCCeEEE
Q 010599 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIG 153 (506)
Q Consensus 79 ~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~ 153 (506)
..|.-+.+..+ +..+.+... ..+|||+|||+|..+..|+++ .++++++.+.+...++...+... ...+.+.
T Consensus 25 ~~~~~~~DaiL--L~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 25 CGFRYGTDAIL--LAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred CccccccHHHH--HHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe
Confidence 34445555553 566664433 569999999999999999987 48889888766655554444421 1135566
Q ss_pred EeccccCC--CCCCCeeEEEEcCcccccCCC-----------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 154 VLGTIKMP--YASRAFDMAHCSRCLIPWGAN-----------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 154 ~~d~~~lp--~~~~sfDlV~~~~~l~~~~~~-----------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..|...+. ....+||+|+|+.-+..-... .+.+++.+.++|||||++.++.++.
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 66765543 334579999998765422222 1367888999999999999997654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=97.56 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=85.5
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLFSL 427 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~D~v~~~~~~~~ 427 (506)
.+|||+|||+|.++..++... ...+++++|.++.+++.+.+. ++ ..+...+.++ ..++ ++||+|.++--+..
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 479999999999999998742 125899999999999988764 32 1222223333 2343 89999999644431
Q ss_pred cc------CC-----------------CCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010599 428 YK------DK-----------------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 428 ~~------~~-----------------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
.. .. .....++.++.|+|||||.+++........++++++++.+|+..
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 10 00 00236789999999999999998766667889999999998744
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=93.58 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=77.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~v~~~~~~~ 426 (506)
...+|||+|||+|.++..++.... ...|+++|.++++++.+.+. ++....-.++.-+...+ ..||+|.|+-=|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 456799999999999999988642 35699999999999988664 22111111233344445 9999999965544
Q ss_pred cccC--CCCHHHHHHHHhhcccCCcEEEE--EeChhhHHHHHHHHh
Q 010599 427 LYKD--KCNIEDILLEMDRILRPEGAIII--RDEVDEIIKVKKIVG 468 (506)
Q Consensus 427 ~~~~--~~~~~~~l~e~~RvLrPgG~~ii--~d~~~~~~~~~~~~~ 468 (506)
.... ...+..++.+..+.|||||.|++ .........|++++.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 2221 01246789999999999998855 444545555666555
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=101.76 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH------c----CCCeEEEEecccc------CCC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE------R----GVPAVIGVLGTIK------MPY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~------~----~~~~~~~~~d~~~------lp~ 162 (506)
.+.+|||+|||-|.-....... .++++|++...+.++..+...- + ...+.+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5679999999988766555554 4789999887776666555211 1 1345666666532 222
Q ss_pred CCCCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 163 ASRAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....||+|-|.+++|+..... ..+|..+...|+|||+||.++|..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 235999999999998766655 468999999999999999998754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.3e-08 Score=91.34 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcC--CCeEEEEecccc-CCCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...+ ..+.+...+... ++...+.||.|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 4459999999999998887542 489999988766544433 33344 235555566654 33334689999985
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ..+...++.++.++|||||++++...
T Consensus 119 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 119 GG----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 42 23457899999999999999998643
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.5e-08 Score=93.99 Aligned_cols=148 Identities=13% Similarity=0.198 Sum_probs=103.6
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCC----CC-Ccee
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFST----YP-RTYD 417 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~----~p-~s~D 417 (506)
.+......+|||+|||+|..+..|+++--. ..+++++..+.|.+.|.+-- +...++-.+.++.. .+ .+||
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 344444788999999999999888887222 68999999999998886542 11111111233322 22 6799
Q ss_pred EEEEccccc---------------cccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC--
Q 010599 418 LIHAHGLFS---------------LYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE-- 480 (506)
Q Consensus 418 ~v~~~~~~~---------------~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~-- 480 (506)
+|.|+-=|- +..-.+++++++.-..++|||||++.+--+.+.+.++-.++++.+|....+.-.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 999964332 122346778899999999999999999999988999999999999987633222
Q ss_pred -CCCCCCeEEEEEEec
Q 010599 481 -DGPLVPEKILVAVKQ 495 (506)
Q Consensus 481 -~~~~~~~~~l~~~k~ 495 (506)
.+.....+++.++|.
T Consensus 198 ~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 198 KIGKAANRVLVEAIKG 213 (248)
T ss_pred CCCCcceEEEEEEecC
Confidence 233345666667663
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.3e-09 Score=103.88 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=69.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccc-eeccccccCCC---CCCc-----eeEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIG-IYHDWCEAFST---YPRT-----YDLIH 420 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~-~~~~~~~~~~~---~p~s-----~D~v~ 420 (506)
..+|||+|||+|.++..|.+......+|+++|.|++||+.+.++- ... .+...+.++.. ++.. ..+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 357999999999999999875321368999999999999998762 111 11222334322 2222 33555
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+.+.|.+.. ..+...+|.++.++|+|||.|+|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 556666543 445678999999999999999983
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.7e-08 Score=95.30 Aligned_cols=140 Identities=11% Similarity=0.059 Sum_probs=89.6
Q ss_pred CCceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcC-----ccceecccccc-CCCC--CCceeEEEEc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERG-----LIGIYHDWCEA-FSTY--PRTYDLIHAH 422 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg-----~~~~~~~~~~~-~~~~--p~s~D~v~~~ 422 (506)
..++|+|||||.|++.+.+.. .-.....++++|.++++++.|++.- +-..+.....+ +... .+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678899999999987665543 2223357999999999999887632 21111111121 1112 2789999997
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---hH-HHHH-HHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EI-IKVK-KIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~-~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
++.... ..+...+|..+.|.|||||.++++---+ .+ ..+. ..++ +|++...-+-.++ .-.-++++||.-
T Consensus 203 -ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~-v~Nsvi~~r~~~ 276 (296)
T PLN03075 203 -ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDE-VINSVIIARKPG 276 (296)
T ss_pred -cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCC-ceeeEEEEEeec
Confidence 555332 3577899999999999999999985321 00 0010 1112 8987766554333 345688999965
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-08 Score=91.75 Aligned_cols=162 Identities=19% Similarity=0.292 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHH-HHHHcCCCeEE--EEecc
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQ-FALERGVPAVI--GVLGT 157 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~dl~~~~~~-~a~~~~~~~~~--~~~d~ 157 (506)
.+.+.+.+.+.++.. +.+|||||||||..+.+++++ + ....|.++.-. ..++ ...+.+.+... ...|+
T Consensus 11 k~pIl~vL~~~l~~~---~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~--~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 11 KDPILEVLKQYLPDS---GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR--PSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred HhHHHHHHHHHhCcc---CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH--hhHHHHHHhcCCcccCCCeEeec
Confidence 355666666666422 226999999999999999886 2 33334433211 1222 22333322111 12233
Q ss_pred cc--CCC------CCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCCCcccc-------hhcccCC-
Q 010599 158 IK--MPY------ASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPINWKTN-------YKAWQRP- 219 (506)
Q Consensus 158 ~~--lp~------~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~~~~~~-------~~~~~~~- 219 (506)
.. .|. ..++||+|+|.+++ |+.+-. +.+++.+.++|+|||.|++.+|...--.. ++.+++.
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 22 233 35689999999987 655433 68999999999999999999876643211 2222221
Q ss_pred --hHHhHHHHHHHHHHHHhcceeeccc-----cCceEEEEe
Q 010599 220 --KEELQEEQRKIEEIANLLCWEKKSE-----KGEIAVWQK 253 (506)
Q Consensus 220 --~~~~~~~~~~l~~l~~~~~w~~~~~-----~~~~~i~~k 253 (506)
.-.+++ .+.+..+++.-+++.... ++.+.||+|
T Consensus 165 dp~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 165 DPEWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 112222 345777777766665432 344666665
|
The function of this family is unknown. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=98.88 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=70.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeEEEE
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---MPYASRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~---lp~~~~sfDlV~~ 172 (506)
.++.+|||+|||+|.++..+++. .|.++|+++.+. +.+++.+..+ .++...+.|+.. +.....+||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 34569999999999999999886 389999986533 3455555544 345566666642 2223458999999
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
... . .++...++.++.++|||||+|++..
T Consensus 209 Dva--~-pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 209 DVA--Q-PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred eCC--C-cchHHHHHHHHHHhccCCCEEEEEE
Confidence 763 2 2333567789999999999999964
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.5e-08 Score=96.84 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=83.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEccc--
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGL-- 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~D~v~~~~~-- 424 (506)
..+|||+|||+|.++..|+... ...+|+++|.|+.+++.|.+. |+...+...+.++ ..++ ++||+|.++-=
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 4579999999999999998742 225899999999999988765 3322222223333 3344 68999999521
Q ss_pred ----ccccc---CC----------C---CHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeec
Q 010599 425 ----FSLYK---DK----------C---NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 425 ----~~~~~---~~----------~---~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
+..+. +. . ....++.++.++|+|||++++.-.... +.+++++...+|.-...+.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 11000 00 0 124688999999999999998665433 6888888877766444433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=96.61 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=65.4
Q ss_pred CEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEE-----eccccCCC--CCCCeeEEEEcC
Q 010599 104 RTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGV-----LGTIKMPY--ASRAFDMAHCSR 174 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~-----~d~~~lp~--~~~sfDlV~~~~ 174 (506)
+.++|+|||+|.-+..+++. .|+++|+++. |++.+.+. .++.... .+....++ .++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~-----mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEA-----MLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHH-----HHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhh
Confidence 38999999999777777775 6999988764 45566543 2222221 12222344 389999999999
Q ss_pred cccccCCChHHHHHHHHHhcCCCe-EEEEE
Q 010599 175 CLIPWGANDGRYMIEVDRVLRPGG-YWVLS 203 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG-~li~~ 203 (506)
|+ ||.+ .+.+++++.|+||+.| .+.+-
T Consensus 109 a~-HWFd-le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AV-HWFD-LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hH-Hhhc-hHHHHHHHHHHcCCCCCEEEEE
Confidence 98 7765 5899999999999866 66554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-09 Score=99.63 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc-cCC-CCCCCeeEEEEcCcc
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMP-YASRAFDMAHCSRCL 176 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~-~lp-~~~~sfDlV~~~~~l 176 (506)
+..+++||+|||||-.+..|... .++++|| |++|+..|.+++.-....+++.. .++ ..+..||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDi-----S~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDI-----SENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCch-----hHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34679999999999999998775 4666655 56677778888765555555543 333 456789999999998
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+ ..+.+.++.-+...|+|||.|.|++
T Consensus 199 ~Y-lG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PY-LGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred Hh-hcchhhHHHHHHHhcCCCceEEEEe
Confidence 66 4567899999999999999999986
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-09 Score=97.95 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 101 GTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.....++|||||.|...+.|..++ ++-+|.|..|+... +-+...++.....+.|-+.|+|.+++||+|+++..+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~--~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl- 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSC--RDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL- 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHh--hccCCCceEEEEEecchhcccccccchhhhhhhhhh-
Confidence 345589999999999999999874 57778776555322 223334566777788889999999999999999887
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
||..+.+..+..+...|||+|.|+-+.-.-
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 999999999999999999999999875443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-08 Score=93.44 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=61.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD 168 (506)
+.+.+.+... .....|-|+|||.+.++..+... .|...|+.+. +..+..+|+..+|++++++|
T Consensus 61 d~iI~~l~~~-~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 61 DVIIEWLKKR-PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHhc-CCCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCcee
Confidence 4555565433 23458999999999999887643 4777777432 11255679999999999999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++..+| +..+...++.|+.|+|||||.|.+..
T Consensus 125 v~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 125 VAVFCLSL--MGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEE
Confidence 99987666 34667999999999999999999974
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.4e-08 Score=96.99 Aligned_cols=139 Identities=15% Similarity=0.140 Sum_probs=90.5
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcc----
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHG---- 423 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~D~v~~~~---- 423 (506)
.+|||+|||+|.++..|+... ...+|+++|.|++++..|.+. ++...+...+.++ ..++ ..||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 579999999999999998742 225899999999999988874 2211121222221 2234 4899999951
Q ss_pred ---------ccccccCC---------CCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHh-cCCceEEEeecCCCCC
Q 010599 424 ---------LFSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG-GMRWDTKMVDHEDGPL 484 (506)
Q Consensus 424 ---------~~~~~~~~---------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~ 484 (506)
++.+.++. ..+..++.+..++|+|||++++.-.......+++++. ..+|....+ ..| -.
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D-~~ 272 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD-LN 272 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC-CC
Confidence 12211110 0234689999999999999999777666778888876 567853322 222 22
Q ss_pred CCeEEEEEEec
Q 010599 485 VPEKILVAVKQ 495 (506)
Q Consensus 485 ~~~~~l~~~k~ 495 (506)
....+++++++
T Consensus 273 g~~R~~~~~~~ 283 (284)
T TIGR00536 273 GKERVVLGFYH 283 (284)
T ss_pred CCceEEEEEec
Confidence 35667777653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-07 Score=93.23 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=75.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
+.+++.+...+.. .++.+|||+|||+|.++..++.. .++++|+++..+..+..+........+.+...|... +
T Consensus 94 e~l~~~~~~~~~~--~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~ 170 (275)
T PRK09328 94 EELVEWALEALLL--KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-P 170 (275)
T ss_pred HHHHHHHHHhccc--cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-c
Confidence 5565555544422 23458999999999999998865 488999988666544443331222345666666532 3
Q ss_pred CCCCCeeEEEEcCcccccC------C-------------------ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSRCLIPWG------A-------------------NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~------~-------------------~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++.++||+|+++..+.... + ....++.++.++|+|||++++..
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3457899999975432110 0 01357788889999999999964
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-08 Score=96.06 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=87.3
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CCCceeEEEEcccccc-
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTYDLIHAHGLFSL- 427 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p~s~D~v~~~~~~~~- 427 (506)
.+|||+|||+|.++..++... ...+|+++|.++.+++.|.+. +.--...++.+.++. ..+.||+|.++-=+.-
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 479999999999998887641 125799999999999988764 211111122222221 2367999999642210
Q ss_pred -----cc-----C--CC------C----HHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCC
Q 010599 428 -----YK-----D--KC------N----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHED 481 (506)
Q Consensus 428 -----~~-----~--~~------~----~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~ 481 (506)
.. + +. + +..++....++|||||.+++.-.......+..++.+.+|+..+..++|
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 00 0 00 0 236778888999999999997666667789999999999988887775
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-08 Score=96.11 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcC------CCeEE
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERG------VPAVI 152 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~dl~~~~~~~a~~~~------~~~~~ 152 (506)
.+-+....-++++....+..+|||||||.|...-.|.+- .+.++|+||..+ ++.+++. ..+.+
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~~~~e~~~~afv 128 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSSGYDESRVEAFV 128 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhccccchhhhcccc
Confidence 344445566666555444448999999999887777664 377888887533 3333221 11222
Q ss_pred EEeccc--cCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 153 GVLGTI--KMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 153 ~~~d~~--~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
...+.. .-|...+++|.|++.+++....++. ..++.++.++|||||.+++.+...
T Consensus 129 ~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 129 WDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred eeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 222222 3356789999999999998776665 799999999999999999986544
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=93.81 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI 158 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~ 158 (506)
.+.+++.+.+.+... ....+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+.. +.+...|..
T Consensus 98 te~lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQ-NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhc-CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchh
Confidence 466666655444211 12248999999999999999864 588999988666544433 3333443 666666654
Q ss_pred cCCCCCCCeeEEEEcCccccc------------CC------------ChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 159 KMPYASRAFDMAHCSRCLIPW------------GA------------NDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~------------~~------------~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
. +++.++||+|+++...... .+ ....++.++.+.|+|||++++....
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 3 3445589999997432211 10 1136788899999999999998643
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.75 E-value=7e-08 Score=90.65 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+|||+|||+|.++..++.+ .++++|+++.+ ....+.+...|....+ +++++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3458999999999998888764 38999998742 1123445555654432 4567899
Q ss_pred EEEEcCccc---ccCCC-------hHHHHHHHHHhcCCCeEEEEEc
Q 010599 169 MAHCSRCLI---PWGAN-------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~---~~~~~-------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|++..+.+ ++..+ ...++.++.++|+|||++++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999864321 11111 2578999999999999999975
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-08 Score=94.45 Aligned_cols=117 Identities=17% Similarity=0.351 Sum_probs=88.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-ceeccccccCCCCCCceeEEEEccccccccC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
+..++||+|+|-|+....|+.. .-+|.+.++|+.|...-.+||.. -...+|. .-+..||+|-|-+++ +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~----~~~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQ----QTDFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhh----ccCCceEEEeehhhh----h
Confidence 4568999999999999999763 35699999999999999999962 2222233 235789999997776 5
Q ss_pred CC-CHHHHHHHHhhcccCCcEEEEE---------------eC-------------hhhHHHHHHHHhcCCceEEEeec
Q 010599 431 KC-NIEDILLEMDRILRPEGAIIIR---------------DE-------------VDEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 431 ~~-~~~~~l~e~~RvLrPgG~~ii~---------------d~-------------~~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
|| ++..+|.+|++.|+|+|.++|. +. .+.+..+-++++.+++++.....
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 88 5778999999999999999992 11 01334444778999999875543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.8e-08 Score=100.15 Aligned_cols=138 Identities=10% Similarity=0.074 Sum_probs=90.0
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCC--CC--CCceeEEEEcccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFS--TY--PRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~--~~--p~s~D~v~~~~~~~~ 427 (506)
.+|||+|||+|.++..|+... ...+|+++|.|+.|++.|.+.-. .+ .+...+.++. .+ .++||+|.|+-=+..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 479999999999998887531 13589999999999998877521 01 1222223321 12 268999999552210
Q ss_pred cc-------------------CCCC---HHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCC
Q 010599 428 YK-------------------DKCN---IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLV 485 (506)
Q Consensus 428 ~~-------------------~~~~---~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 485 (506)
.. .... +..++.+..+.|+|||.+++.-.....+.+++++.+.+|....+..+-. +
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~--G 409 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA--G 409 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC--C
Confidence 00 0011 2257778889999999999866666778899999988987543333222 3
Q ss_pred CeEEEEEEe
Q 010599 486 PEKILVAVK 494 (506)
Q Consensus 486 ~~~~l~~~k 494 (506)
.+.++++++
T Consensus 410 ~dR~v~~~~ 418 (423)
T PRK14966 410 LDRVTLGKY 418 (423)
T ss_pred CcEEEEEEE
Confidence 566777765
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=91.72 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=56.9
Q ss_pred eecCCCcccHHHHHhcCc---------cceeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEE
Q 010599 381 VPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAI 451 (506)
Q Consensus 381 ~~~d~~~~~l~~~~~rg~---------~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ 451 (506)
+++|.|++||++|.+|.- +.....-++++|..+++||+|.+..++++. .+...+|.|++|+|||||.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEE
Confidence 478999999999976521 222222345565445899999998888844 47889999999999999999
Q ss_pred EEEeChh
Q 010599 452 IIRDEVD 458 (506)
Q Consensus 452 ii~d~~~ 458 (506)
+|.|-..
T Consensus 78 ~i~d~~~ 84 (160)
T PLN02232 78 SILDFNK 84 (160)
T ss_pred EEEECCC
Confidence 9987543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=89.78 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=70.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-CCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-MPYAS 164 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~-lp~~~ 164 (506)
.+.+.+... .+.+|||+|||+|.++..++.. .++++|+++.++..++.+.. +.+. ++.+...|+.. ++...
T Consensus 31 ~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHHHhhCC
Confidence 355555433 3458999999999999888743 48999999877655544333 3333 35565556533 22222
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..+|.|+... ..+...++.++.++|+|||+|++..+
T Consensus 108 ~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 3467665422 22347899999999999999999864
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-08 Score=101.15 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=80.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~D~v~~~~ 423 (506)
.+..+|||.|||+|+++..++..+ ..++++|.++.|+..+... |+.. ++..+.+ ++..+++||+|.++-
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECC
Confidence 345579999999999977666544 5799999999999976654 3322 1111233 333347999999964
Q ss_pred ccccc--cCC----CCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010599 424 LFSLY--KDK----CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 424 ~~~~~--~~~----~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
-+... ... .....+|.++.|+|||||++++.-+.. ..+++++++.+| +.
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR-VV 311 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc-ch
Confidence 33211 011 114689999999999999998865432 256677889999 44
|
This family is found exclusively in the Archaea. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=93.15 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
..+|||+|||+|.++..++.+ .++++|+++..+..+..+ +...+. .+.+...|... ++++++||+|+|+.-.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 358999999999999999875 488999988766544433 344444 35666666532 3345689999997432
Q ss_pred cc------c----CCCh--------------HHHHHHHHHhcCCCeEEEEEcC
Q 010599 177 IP------W----GAND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~------~----~~~~--------------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. . ..++ ..++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 0 0011 3668889999999999999864
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-08 Score=90.36 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=60.9
Q ss_pred EEEecCccchHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEE
Q 010599 126 IAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 126 ~~vdis~~dl~~~~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
+++|+|+.|+..+..+..... ...+.+.++|+.++|+++++||+|++.++++++ +++..+++|+.|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 367888877765543322111 124678889999999999999999999988664 6789999999999999999998
Q ss_pred Ec
Q 010599 203 SG 204 (506)
Q Consensus 203 ~~ 204 (506)
..
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 64
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-08 Score=91.80 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=71.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
+.|.+.|...+ ....|-|+|||.+.++... ...|..+|+.+. +-.+..+|+.++|++++|.|+
T Consensus 169 d~ii~~ik~r~-~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 169 DVIIRKIKRRP-KNIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHhCc-CceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccE
Confidence 35555554332 3458999999999877521 125787777432 234566799999999999999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++..+| +..+...++.|++|+|||||.+++..-
T Consensus 232 aV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 232 AVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred EEeeHhh--hcccHHHHHHHHHHHhccCceEEEEeh
Confidence 9985554 456779999999999999999999743
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-08 Score=97.44 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=77.1
Q ss_pred CCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc------CCCeEEEEecc------ccCCCCCC
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER------GVPAVIGVLGT------IKMPYASR 165 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~------~~~~~~~~~d~------~~lp~~~~ 165 (506)
..+..+||+|||-|.-+...... .++++||+...+..++.+.-.-. -.++.+..+|. ..+++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 34557999999999766666554 47899998766655554432211 13467777775 24566677
Q ss_pred CeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 166 AFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+||+|-|.+++|+-.... ..+|.++.+.|||||+||-+.|..
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 799999999996543333 578999999999999999998865
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-07 Score=85.57 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=71.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~ 432 (506)
.-.|-|+|||.+.+|..+... ..|...|+-.. .++ + +.-| ...+|.-++++|++.+...+. ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~-----n~~-V--tacd-ia~vPL~~~svDv~VfcLSLM----GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP-----NPR-V--TACD-IANVPLEDESVDVAVFCLSLM----GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-S-----STT-E--EES--TTS-S--TT-EEEEEEES-------SS
T ss_pred CEEEEECCCchHHHHHhcccC----ceEEEeeccCC-----CCC-E--EEec-CccCcCCCCceeEEEEEhhhh----CC
Confidence 347999999999999887642 34555555411 011 1 1111 134454459999877633332 46
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010599 433 NIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
+..+.|.|..|||||||.|+|.+-.. .++...+.+++++++....|.. +.-++++.-+|.-
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~---n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES---NKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-----STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC---CCeEEEEEEEEcC
Confidence 78899999999999999999987543 4566777799999997775544 2356666666654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.7e-08 Score=92.11 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=67.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--CceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP--RTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p--~s~D~v 419 (506)
.+...+..+|||+|||+|.++..|+... ..|+++|.++++++.+.++ ++. .+...+.++ ..++ +.||+|
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCEE
Confidence 3444556789999999999998887753 3799999999999988765 221 111112222 2222 789999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+++..+. .+..++.+.|+|||.+++.-
T Consensus 149 ~~~~~~~---------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAP---------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCch---------hhhHHHHHhcCCCcEEEEEE
Confidence 9965443 34567889999999999853
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-08 Score=91.45 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=71.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----C-cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~-v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
......+.+.+.+.+ +.+|||||||+|++++.|+.. + |+++|+.+.....+...++.....++.+...|...-
T Consensus 58 P~~~a~~l~~L~l~p--g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKP--GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-T--T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCC--CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 344566777776554 459999999999999988864 2 778999875444444444433333567777776433
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
--....||.|++....... -..+.+.||+||++++-..
T Consensus 136 ~~~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred cccCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEEc
Confidence 2235689999998765321 2557778999999999643
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=94.32 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=79.4
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeEEEEcccc--
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHGLF-- 425 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~D~v~~~~~~-- 425 (506)
.+|||+|||+|.++.+|+... ...+|+++|.|+.+++.|.+. ++...+...+.++ ...+ ++||+|.++-=+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 579999999999999998742 236899999999999988765 3322222333443 2344 689999996211
Q ss_pred -----------ccccCC------C---CHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCce
Q 010599 426 -----------SLYKDK------C---NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 426 -----------~~~~~~------~---~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~ 473 (506)
.+.++. . ....++.++.++|+|||++++.-... ...+.+++...++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCE
Confidence 111100 0 12468999999999999999964433 44588877766543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=94.74 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=72.5
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp 161 (506)
+...+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+.. +.+...|....+
T Consensus 68 l~a~ll~~L~i~--~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l-~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-RRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCC--CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCChhhcc
Confidence 334455555443 3458999999999999998864 2889999886665444333 333443 566666765555
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...++||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 44568999999754422 2345778999999998854
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=102.53 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=83.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++..|+..- ....|+++|.|+.+++.|.+. ++...+...+.+ +..++ +.||+|+|+-=+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3579999999999998887531 225899999999999998876 321112112222 22333 6899999953111
Q ss_pred --------------ccc------CCCC---HHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010599 427 --------------LYK------DKCN---IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 427 --------------~~~------~~~~---~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
+.+ .... +..++.++.++|+|||.+++.-.....+.+.+++.+.+|....
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIES 290 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceE
Confidence 000 0111 2347889999999999999976656678889998888887543
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-08 Score=78.82 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=69.5
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---cCc---cceeccccccCCC-CCCceeEEEEcccccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGL---IGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---rg~---~~~~~~~~~~~~~-~p~s~D~v~~~~~~~~ 427 (506)
+|||+|||+|.++..+... ...+++++|.+++++..+.+ .+. +..++.-...... .+..||+|++...+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999988872 24689999999888887762 121 1111111112221 2478999999888874
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
. ......++..+.+.|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 446778999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-08 Score=93.82 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
...++||.|+|.|+.+..|+-.. |..++..+..+..+...+......-..+.+...+....+.++||+|.+.+|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 45689999999999999887653 555555443333332222112222245556666666545679999999999999
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 179 WGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.++. -.+|+.+...|+|+|.+++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 87655 799999999999999999943
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-07 Score=92.17 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=69.6
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+. .+.+...|... ++++++||+|+|+..+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 58999999999999999865 488999988766544433 333443 36667667533 23456899999974321
Q ss_pred c------------cCC--------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 P------------WGA--------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~------------~~~--------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +.+ + ...++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 000 0 13678999999999999999754
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-07 Score=92.45 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=91.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEccccc----
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFS---- 426 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~D~v~~~~~~~---- 426 (506)
+|||||||+|-.|.+|+... ...+|+++|.|+..++.|.+- |+.....--+.-|+.....||+|.|+-=.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 79999999999999998864 236999999999999988654 331111111122444557999999842110
Q ss_pred -ccc--------------CCC---CHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCCCeE
Q 010599 427 -LYK--------------DKC---NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEK 488 (506)
Q Consensus 427 -~~~--------------~~~---~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 488 (506)
+.. ..+ -...++.+..++|+|||.+++.-.....+.+++++.+.++ ...+.....-...+.
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~-~~~v~~~~d~~g~~r 270 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF-FEIVETLKDLFGRDR 270 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC-ceEEEEEecCCCceE
Confidence 000 001 1125889999999999999998887778899999999994 222222212223566
Q ss_pred EEEEEe
Q 010599 489 ILVAVK 494 (506)
Q Consensus 489 ~l~~~k 494 (506)
++++++
T Consensus 271 v~~~~~ 276 (280)
T COG2890 271 VVLAKL 276 (280)
T ss_pred EEEEEe
Confidence 666654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.5e-07 Score=87.23 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~ 158 (506)
...+.+++.+...+... ....+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+ ..+...|..
T Consensus 68 ~~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeech
Confidence 34466667666655311 12348999999999999988764 488999988766544433 33333 345556654
Q ss_pred c-CCC-CCCCeeEEEEcCcccccC------C---------------C----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 159 K-MPY-ASRAFDMAHCSRCLIPWG------A---------------N----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 ~-lp~-~~~sfDlV~~~~~l~~~~------~---------------~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ++- ..++||+|+++.-+.... + + ...++..+.++|+|||.+++...
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3 221 135799999986443210 0 0 12667778899999999999864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.3e-07 Score=89.88 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=71.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Ccc---ceecccccc----CCCCCCceeEEEEcc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLI---GIYHDWCEA----FSTYPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~---~~~~~~~~~----~~~~p~s~D~v~~~~ 423 (506)
..++|||||||+|.++..+.... ....|+.+|.+++++++|.+. +.. ..++-.+.+ +...+.+||+|.++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 45789999999999999887642 346899999999999999886 221 112222233 23345789999985
Q ss_pred ccccc--cCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 424 LFSLY--KDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 424 ~~~~~--~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.|... ........++.++.++|+|||.++|.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 34321 11112368999999999999999983
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=89.56 Aligned_cols=102 Identities=14% Similarity=0.221 Sum_probs=76.9
Q ss_pred CceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCc------cceeccccccC-CC--CCCceeEEEEc
Q 010599 353 YRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAF-ST--YPRTYDLIHAH 422 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~~~~~-~~--~p~s~D~v~~~ 422 (506)
..+||.+|||.|....-|.+ .+-....|.+.|.|++.+++..++-. .+.+.|.+.+= .. .++++|+|.+-
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 33799999999997666654 22223789999999999998887732 23444443322 11 23999999999
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+|+... ...+..++..+.|+|||||.|++||
T Consensus 152 FvLSAi~-pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 152 FVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEeccC-hHHHHHHHHHHHHHhCCCcEEEEee
Confidence 9999665 5578899999999999999999986
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=86.89 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=71.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
+.+.+.+... .+.+|||+|||+|.++..++++ .++++|+++.++...+..... ..++.+...|+..+++++.+|
T Consensus 3 ~~i~~~~~~~--~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLR--PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCC--CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 3455555433 3458999999999999999987 588999987555433322221 234677788888888877789
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHh--cCCCeEEEEE
Q 010599 168 DMAHCSRCLIPWGANDGRYMIEVDRV--LRPGGYWVLS 203 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rv--LkPGG~li~~ 203 (506)
|.|+++..+ +.. ...+..+.+. +.++|.|++.
T Consensus 79 d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 79 YKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 999998654 321 3344444432 4578888875
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-07 Score=85.53 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=71.0
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~ 164 (506)
....+.+.+...+ +.+|||||||+|+.++.|++. .|.+++..+.-...+..++ ...+. ++.+.+.|...---+.
T Consensus 60 ~vA~m~~~L~~~~--g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L-~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELKP--GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNL-ETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCCC--CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHH-HHcCCCceEEEECCcccCCCCC
Confidence 4455677775544 459999999999999999886 5788887653222222222 23344 4666666653322234
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..||.|+........ + ..+.+-|||||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~v-P------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEV-P------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCC-C------HHHHHhcccCCEEEEEEc
Confidence 689999987765332 2 456678999999999653
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-07 Score=96.70 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=77.0
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCC
Q 010599 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASR 165 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~ 165 (506)
+...+.. .++.+|||+|||+|..+..+++. .++++|+++.++.... +.+...+..+.+...|...++ +..+
T Consensus 236 ~~~~l~~--~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 236 AATLLAP--QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHcCC--CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccC
Confidence 3444533 34569999999999999888865 4889999887765444 344445666677777776654 3457
Q ss_pred CeeEEEEcCccc-----------ccCCCh----------HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 166 AFDMAHCSRCLI-----------PWGAND----------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~-----------~~~~~~----------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||.|++..... .|...+ ..++.++.++|||||++++++..
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 899999532110 111111 36899999999999999998743
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9e-07 Score=88.61 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH-----cCCCeEEEEecccc-CCCCCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE-----RGVPAVIGVLGTIK-MPYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~-----~~~~~~~~~~d~~~-lp~~~~sfDlV~ 171 (506)
.+.+||+||||+|..+..++++ .++++|+++..+..+...+..- ...++.+...|... +....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4568999999999999998876 4789999886665444333221 12346667777643 333467899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010599 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+...- ++... ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86432 32221 1577899999999999999864
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.8e-07 Score=90.21 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=92.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Ccc---------ceeccc-ccc---CCCCCC
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLI---------GIYHDW-CEA---FSTYPR 414 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~---------~~~~~~-~~~---~~~~p~ 414 (506)
.....++||++|||+|..++.+.+.+ .+.+|+.+|++++|+++|++. .+. ..+.-. +.. +...++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 34456799999999999888888753 357899999999999999962 110 011000 111 222347
Q ss_pred ceeEEEEcccccccc--CCCCHHHHHHHHhhcccCCcEEEEEeChh-----hHHHHHHHHhcCCceEEEeec-CCCCCCC
Q 010599 415 TYDLIHAHGLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDH-EDGPLVP 486 (506)
Q Consensus 415 s~D~v~~~~~~~~~~--~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~~~~~~w~~~~~~~-~~~~~~~ 486 (506)
.||+|.++..-.... ...--..++..+.+.|+|||.+++....+ ....+.+.+++....+..... ...-...
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 899999963221100 01111468899999999999999965432 223345556666666553322 2111124
Q ss_pred eEEEEEEeccccc
Q 010599 487 EKILVAVKQYWVA 499 (506)
Q Consensus 487 ~~~l~~~k~~w~~ 499 (506)
+.+++|.|.-...
T Consensus 306 WgF~~as~~~~~~ 318 (374)
T PRK01581 306 WGFHIAANSAYVL 318 (374)
T ss_pred eEEEEEeCCcccc
Confidence 8888898865543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-06 Score=78.14 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=85.6
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---c-Cccceeccccc----cCCCCCCceeE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---R-GLIGIYHDWCE----AFSTYPRTYDL 418 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---r-g~~~~~~~~~~----~~~~~p~s~D~ 418 (506)
.+...+...++|+|||||+.+..++. -.....|+++|.++++++.+.. | |+ .++.-... .++.+| +||.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~-~~da 105 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLP-SPDA 105 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCC-CCCE
Confidence 45556667899999999999888872 2245799999998888876543 2 32 22211112 233344 8999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe-ChhhHHHHHHHHhcCCc-eEE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRW-DTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w-~~~ 475 (506)
|+.... -.++.+|......|||||++++.- +++....+-+.++++++ ++.
T Consensus 106 iFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 106 IFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred EEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 998443 267889999999999999999964 55677777778899999 544
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-08 Score=82.48 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=68.5
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c---cceeccccccCC-CCC-CceeEEEEccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L---IGIYHDWCEAFS-TYP-RTYDLIHAHGL 424 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~---~~~~~~~~~~~~-~~p-~s~D~v~~~~~ 424 (506)
.+|||+|||+|.++.++.+.+ ..+++++|.++..++.++.+- + +..++.-..++. .++ +.||+|.++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 369999999999999988765 478999999999999888752 1 111111111222 233 99999999887
Q ss_pred cccccC-----CCCHHHHHHHHhhcccCCcEEEEE
Q 010599 425 FSLYKD-----KCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 425 ~~~~~~-----~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|..... +.....++.++.|+|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 773211 112357899999999999999874
|
... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.9e-07 Score=95.84 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=76.1
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---CC--CCCceeEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---ST--YPRTYDLI 419 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~~--~p~s~D~v 419 (506)
...+..+|||||||+|+.+.++++.-. ...|+++|.+++++..+.++ |+...+...+.+. +. .+.+||.|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 334457899999999999998887421 35799999999999987665 3321111111221 11 13789999
Q ss_pred EEc------cccccccCCCC----------------HHHHHHHHhhcccCCcEEEEEeC----hhhHHHHHHHHhc
Q 010599 420 HAH------GLFSLYKDKCN----------------IEDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGG 469 (506)
Q Consensus 420 ~~~------~~~~~~~~~~~----------------~~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~ 469 (506)
.++ +++. +..+ -..+|.++.|+|||||.|+++.- .+-...++.++++
T Consensus 314 llDaPcSg~G~~~---~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 314 LLDAPCSATGVIR---RHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred EEcCCCCCCcccc---cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 963 2333 2222 13699999999999999999632 2344555666554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-07 Score=95.82 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC----CCCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP----YASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp----~~~~sfDlV~ 171 (506)
++.+|||+|||+|..+..+++. .++++|+++.++.....+ +...|. ++.+...|...++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4568999999999999888764 389999988777554433 344454 3566677776665 4467899999
Q ss_pred Ec------CcccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 172 CS------RCLIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 172 ~~------~~l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+. .++.+ .++ ...+|.++.++|||||+|+.++..
T Consensus 331 ~DaPCSg~G~~~r-~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHR-HPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCccccccc-CcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 62 12211 111 247799999999999999988643
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=88.33 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=79.4
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-----C-CCceeEEEEccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-----Y-PRTYDLIHAHGL 424 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-----~-p~s~D~v~~~~~ 424 (506)
.+||||||.|.|...++... ...|++++|...+.+..|..+ ++ .+++.++.+... + |+++|-|+...=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 69999999999999998642 237999999998888766555 33 333333433222 3 499999998211
Q ss_pred cc-----cccCCCCHHHHHHHHhhcccCCcEEEE-EeChhhHHHHHHHHhc--CCceEE
Q 010599 425 FS-----LYKDKCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGG--MRWDTK 475 (506)
Q Consensus 425 ~~-----~~~~~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~--~~w~~~ 475 (506)
=. |...|---+..|.++.|+|||||.+.+ +|..++.+.+.+.+.. -.++..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 11 222222235799999999999999999 5666788888887666 366644
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-07 Score=87.11 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=70.5
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CC--CCCCCeeEEEEcCccc
Q 010599 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MP--YASRAFDMAHCSRCLI 177 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~-lp--~~~~sfDlV~~~~~l~ 177 (506)
.+||||||.|.+...++.. .++|+|+...-+..+..+.......++.+...|+.. +. ++++++|.|+..+. .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 8999999999999999876 589999988666555555444444456666667654 22 56789999998764 3
Q ss_pred ccCCCh--------HHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 PWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~--------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|.... ..++.++.++|+|||.|.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 554322 3899999999999999999864
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-07 Score=92.90 Aligned_cols=96 Identities=15% Similarity=0.056 Sum_probs=65.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC---CCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY---PRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~---p~s~D~v~~~~ 423 (506)
.+..+|||+|||+|.+++.|++.......|+++|.+++|++.|.++ |+ ..++..+.+.... ...||+|++..
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECC
Confidence 3446899999999999999987421113599999999999988764 33 2222233333221 26799999854
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+. .+...+.++|||||.+++-..
T Consensus 158 g~~---------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 158 GVD---------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred chH---------HhHHHHHHhcCCCCEEEEEeC
Confidence 332 234567789999999998543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.4e-07 Score=85.11 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=71.0
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCCCH
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNI 434 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~ 434 (506)
.|-|+|||-+.+|..-.. .|..+.+++++-. -..-.+ ..+|.-++|.|++.+-..+ -..++
T Consensus 183 vIaD~GCGEakiA~~~~~-kV~SfDL~a~~~~----------V~~cDm----~~vPl~d~svDvaV~CLSL----Mgtn~ 243 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSERH-KVHSFDLVAVNER----------VIACDM----RNVPLEDESVDVAVFCLSL----MGTNL 243 (325)
T ss_pred EEEecccchhhhhhcccc-ceeeeeeecCCCc----------eeeccc----cCCcCccCcccEEEeeHhh----hcccH
Confidence 589999999988752222 2344444444322 111111 2355556999987652222 24688
Q ss_pred HHHHHHHhhcccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecC
Q 010599 435 EDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 435 ~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.+.+.|..|||||||.|+|.+-.. .+..+.+-+.+|++++...+..
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 899999999999999999976543 4555677789999997765544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-07 Score=97.85 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEc--
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCS-- 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~-- 173 (506)
++.+|||+|||+|..+..+++. .++++|+++.++.... +.+...++. +.+...|+..++ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 4568999999999988777653 4899999987775544 334444554 566667776654 45789999952
Q ss_pred --Cccc-------ccCCC----------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 174 --RCLI-------PWGAN----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 --~~l~-------~~~~~----------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..-. .|... ...+|.++.++|||||++++++...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1110 11111 1358999999999999999987544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.3e-07 Score=88.03 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
...+|||||+|.|.++..++++ .++..|+ ...++.+.+ ...+.+..+|.. -++|. +|+|+..+++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3458999999999999999876 3566666 333444444 456888888877 66665 99999999999
Q ss_pred ccCCCh-HHHHHHHHHhcCCC--eEEEEEc
Q 010599 178 PWGAND-GRYMIEVDRVLRPG--GYWVLSG 204 (506)
Q Consensus 178 ~~~~~~-~~~l~e~~rvLkPG--G~li~~~ 204 (506)
+|.++. ..+|+++.+.|+|| |.+++..
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 997755 78999999999999 9999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.8e-07 Score=94.76 Aligned_cols=112 Identities=12% Similarity=0.063 Sum_probs=74.5
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEE--EEeccccCCC--C
Q 010599 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVLGTIKMPY--A 163 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~--~~~d~~~lp~--~ 163 (506)
+...+.. .++.+|||+|||+|..+..+++. .++++|+++..+..... .+...+..+.+ ...+....++ +
T Consensus 230 ~~~~L~~--~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 230 VATWLAP--QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHhCC--CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEecccccccccccc
Confidence 4444533 34569999999999999888764 48999998876655443 33444555433 4444444443 4
Q ss_pred CCCeeEEEEc------CcccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 164 SRAFDMAHCS------RCLIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~------~~l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.++||.|++. .++.+ .++ ...+|.++.++|||||+|++++...
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~-~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRR-HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccCEEEEcCCCCCCccccc-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6789999952 12221 111 2478999999999999999987544
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=86.48 Aligned_cols=116 Identities=13% Similarity=0.170 Sum_probs=73.3
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-CCCeEEEEecccc-C
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIK-M 160 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~-l 160 (506)
.|.+.+...+... ..+++|||||||+|.++..++.. .++++|+++..+..+...+.... ..++.+...|... +
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 3444443333211 23458999999999999988765 48999998765544333322211 2345666677643 2
Q ss_pred CCCCCCeeEEEEcCcccc--cCC--ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 PYASRAFDMAHCSRCLIP--WGA--NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~--~~~--~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.-..++||+|++.. +.. ... ....+++++.+.|+|||.+++..
T Consensus 131 ~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 131 AVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred HhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 22246899999853 211 111 12689999999999999999863
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-07 Score=91.98 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.....+. ...+. ++.+...|...++...++||.|++.-.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4558999999999999888763 3889999887665444333 33444 356666676666655567999996311
Q ss_pred ------ccc-------cCC--------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 176 ------LIP-------WGA--------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 ------l~~-------~~~--------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.+ +.+ ....+|.++.+.|||||+++.++...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 100 000 11358999999999999999986543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-07 Score=95.13 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=75.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC-C-CceeEEEEc--
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-P-RTYDLIHAH-- 422 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~-p-~s~D~v~~~-- 422 (506)
....+|||+|||+|+.+.+|++.-.....|+++|.++.|++.+.++ |+ ..+...+.+...+ + .+||+|.++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence 3456899999999998877765311124899999999999877665 33 2222233443333 3 789999963
Q ss_pred ----ccccccc------CCCCH-------HHHHHHHhhcccCCcEEEEEeC-h---hhHHHHHHHHhc
Q 010599 423 ----GLFSLYK------DKCNI-------EDILLEMDRILRPEGAIIIRDE-V---DEIIKVKKIVGG 469 (506)
Q Consensus 423 ----~~~~~~~------~~~~~-------~~~l~e~~RvLrPgG~~ii~d~-~---~~~~~~~~~~~~ 469 (506)
+++..-. ...++ ..+|.++.++|||||++++..- . +-...++.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 1221000 00111 2589999999999999999752 2 234556666664
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=92.19 Aligned_cols=124 Identities=16% Similarity=0.223 Sum_probs=79.6
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-------CCCcee
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-------YPRTYD 417 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-------~p~s~D 417 (506)
......+|||+|||+|+.+.+|++.-.....|+++|.++.|++.+.++ |+ ..+...+.+... .+++||
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCC
Confidence 333456899999999999988876411124799999999999977664 33 122223333332 237899
Q ss_pred EEEEc------cccccccC---C---CC-------HHHHHHHHhhcccCCcEEEEEe-Ch---hhHHHHHHHHhcC-Cce
Q 010599 418 LIHAH------GLFSLYKD---K---CN-------IEDILLEMDRILRPEGAIIIRD-EV---DEIIKVKKIVGGM-RWD 473 (506)
Q Consensus 418 ~v~~~------~~~~~~~~---~---~~-------~~~~l~e~~RvLrPgG~~ii~d-~~---~~~~~~~~~~~~~-~w~ 473 (506)
.|.++ +++.+-.. + .+ ...+|.++.++|||||+|+.++ +. +-...++.++++- .|+
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 99963 23321110 0 01 2468999999999999998864 22 3455666666654 465
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.8e-07 Score=94.22 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlV~~~~ 174 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.....+ +...+.. +.+...|...++ +..++||.|++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 4558999999999988887763 489999998777554433 4444554 566777777665 4567899999621
Q ss_pred cc---cccCCC------------------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 175 CL---IPWGAN------------------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l---~~~~~~------------------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. -.+..+ ...+|.++.+.|||||++++++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 11 011111 1456899999999999999987544
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-07 Score=91.29 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=77.2
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCC----hhHHHHhhC--------CcEEEecCccchHHHHHHH--
Q 010599 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVA----SWGAYLWSR--------NVIAMSFAPRDSHEAQVQF-- 142 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G----~~~~~L~~~--------~v~~vdis~~dl~~~~~~~-- 142 (506)
+.+.|.+....+ +.+.+.+... ...-+|+..||++| +++..|.+. .|+|+||++..+..+..-.
T Consensus 92 neT~FFRd~~~f-~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 92 NLTAFFREAHHF-PILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCCCccCCcHHH-HHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 445555555444 3333333111 22368999999999 344444442 3788888776555444310
Q ss_pred --HH--------Hc----------C---------CCeEEEEeccccCCCC-CCCeeEEEEcCcccccCCCh-HHHHHHHH
Q 010599 143 --AL--------ER----------G---------VPAVIGVLGTIKMPYA-SRAFDMAHCSRCLIPWGAND-GRYMIEVD 191 (506)
Q Consensus 143 --a~--------~~----------~---------~~~~~~~~d~~~lp~~-~~sfDlV~~~~~l~~~~~~~-~~~l~e~~ 191 (506)
.. ++ + ..+.|...|....+++ .+.||+|+|.++++|+.+.. ..++..+.
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV 249 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence 00 00 0 0134445555443443 57899999999999986543 79999999
Q ss_pred HhcCCCeEEEEEc
Q 010599 192 RVLRPGGYWVLSG 204 (506)
Q Consensus 192 rvLkPGG~li~~~ 204 (506)
+.|+|||+|++..
T Consensus 250 ~~L~pgG~L~lG~ 262 (287)
T PRK10611 250 PLLKPDGLLFAGH 262 (287)
T ss_pred HHhCCCcEEEEeC
Confidence 9999999988764
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=84.28 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHH-HHcCC----------------CeEEEEeccccCCC
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFA-LERGV----------------PAVIGVLGTIKMPY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a-~~~~~----------------~~~~~~~d~~~lp~ 162 (506)
.+.+||..|||.|.-...|+++| |+++|+|+ .+++.+ .+++. .+.+.++|...++-
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~-----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP-----TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-H-----HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCH-----HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 34589999999999999999997 66666655 444444 22221 24567778877764
Q ss_pred CC-CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010599 163 AS-RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 163 ~~-~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
.. ++||+|+-..+|+-+.++. .++.+.+.++|+|||.+++
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 33 5899999877776665555 7899999999999999444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=84.40 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=78.6
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC---CCCCCCeeEEEEcCc
Q 010599 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM---PYASRAFDMAHCSRC 175 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~l---p~~~~sfDlV~~~~~ 175 (506)
..+||||||.|.+...+|++ .++|+++...-+ ..+.+.+.+.++ ++.+...|+..+ -+++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 48999999999999999987 589999987555 344456667778 788887787543 245669999999775
Q ss_pred ccccCCCh--------HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 176 LIPWGAND--------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~--------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+|+... ..+++.+.++|+|||.|.+.+..
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 4665433 37999999999999999998643
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=92.83 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc--
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-- 159 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~-- 159 (506)
.+.+++.+.+.+... ++.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...+. ++.+...|+..
T Consensus 282 ~e~l~~~vl~~l~~~--~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQ--PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCC--CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhh
Confidence 466667777777433 3458999999999999999876 48899999877765543 3333444 46777777643
Q ss_pred --CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 160 --MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 --lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++.+++||+|++.... .. ....+..+.+ ++|++.++++..|.
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeEEEEEeChH
Confidence 34556789999986532 22 2345555555 69999999998766
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.7e-07 Score=88.30 Aligned_cols=120 Identities=10% Similarity=0.031 Sum_probs=84.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--CceeEEEEccccccccC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~D~v~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..+..+. ...+|+++|.++.|++.++++- ..+...+.++..+. ++||+|.++.-|.+...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 3579999999999988886642 1258999999999999998762 12222334444433 78999999888875321
Q ss_pred C-------C----------CHHHHHHHHhhcccCCcEEEEEeC---h----hhHHHHHHHHhcCCceEE
Q 010599 431 K-------C----------NIEDILLEMDRILRPEGAIIIRDE---V----DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 431 ~-------~----------~~~~~l~e~~RvLrPgG~~ii~d~---~----~~~~~~~~~~~~~~w~~~ 475 (506)
. - .+...+....++|+|+|.+++.=. . -.-++.+++++..++...
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 1 1 145788999999999998877411 1 134678888888887743
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.5e-07 Score=89.17 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=68.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c--cceecccccc----CCCCCCceeE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L--IGIYHDWCEA----FSTYPRTYDL 418 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~--~~~~~~~~~~----~~~~p~s~D~ 418 (506)
...++|||+|||+|+++..+.+.. .+.+|+.+|+++++++.|++.- . ...+.-..++ +...+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 346789999999999999988752 2468999999999999998741 1 0001111121 2223479999
Q ss_pred EEEccccccccC-CCCHHHHHHHHhhcccCCcEEEEE
Q 010599 419 IHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 419 v~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.++..-..... ..--..++.++.|+|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998543221110 001256789999999999999995
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.7e-07 Score=93.87 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=75.8
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~D~v~ 420 (506)
...+..+|||+|||+|+.+.++++.-.....|+++|.++.+++.+.++ |+. .+...+.+ ++ ..+++||.|.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEE
Confidence 334456899999999999888876411125899999999999988765 331 12111222 33 2247899999
Q ss_pred Ecc---ccccccCCCCH----------------HHHHHHHhhcccCCcEEEEEe----ChhhHHHHHHHHh
Q 010599 421 AHG---LFSLYKDKCNI----------------EDILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVG 468 (506)
Q Consensus 421 ~~~---~~~~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~ 468 (506)
++. .+..+....++ ..+|.+..+.|||||.++.+. ..+-.+.|+.++.
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 742 22222111111 357999999999999999953 2334455666654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.7e-07 Score=93.57 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=76.2
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC---C-C-CCceeEEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS---T-Y-PRTYDLIH 420 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~---~-~-p~s~D~v~ 420 (506)
..+..+|||+|||+|+.+.++++... ...|+++|.++.|+..+.++ |+ . ....+.+.. . + +++||.|.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~-~-~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL-K-ATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC-C-eEEEEcCcccchhhcccCCCCEEE
Confidence 34456899999999999999987531 15799999999999988665 22 1 111223322 1 2 37899999
Q ss_pred Ecccccc---ccCC---------CC-------HHHHHHHHhhcccCCcEEEEEeC----hhhHHHHHHHHhc
Q 010599 421 AHGLFSL---YKDK---------CN-------IEDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGG 469 (506)
Q Consensus 421 ~~~~~~~---~~~~---------~~-------~~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~ 469 (506)
++.-.+. ..++ .+ ...+|.+..++|||||.++++.- .+-.+.++.++++
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 5432221 1011 11 13689999999999999998652 3344556666554
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.6e-06 Score=82.38 Aligned_cols=103 Identities=11% Similarity=0.107 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc----CCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER----GVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~----~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+++||+||||+|.++..+++. .++++|+++..+..+...+.... ...+.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3459999999999999888765 48889998765544443322211 1234455555432 2222568999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.... +.... ...+++.+.+.|+|||.+++...
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 6542 22221 25788999999999999998743
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-07 Score=88.51 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=76.1
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-CCCCCceeEEEEcc
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-STYPRTYDLIHAHG 423 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-~~~p~s~D~v~~~~ 423 (506)
.......+.++|||||+|+|.++.++.++. ..+.++-.|.+ .+++.+.+..-+. ....+| ..+|. +|++...+
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v~~~~~~~~rv~---~~~gd~f~~~P~-~D~~~l~~ 166 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDLP-EVIEQAKEADRVE---FVPGDFFDPLPV-ADVYLLRH 166 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE-H-HHHCCHHHTTTEE---EEES-TTTCCSS-ESEEEEES
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeeccH-hhhhccccccccc---cccccHHhhhcc-ccceeeeh
Confidence 335677788999999999999999997642 23578888985 8888887732221 112333 45667 99999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCC--cEEEEEeCh
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPE--GAIIIRDEV 457 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPg--G~~ii~d~~ 457 (506)
+|+.+.+ .+...+|+.+.+.|+|| |+|+|.|.+
T Consensus 167 vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 167 VLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9985552 34568999999999999 999997654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=85.14 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
..+|||+|||+|.++..++.+ .++++|+++.++ +.++++...+.+...|+..+.. .++||+|+++..+.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-----~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-----RIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence 348999999999998888653 488888877444 4444443456777778776553 468999999888766
Q ss_pred cCCCh-------------------HHHHHHHHHhcCCCeEEEEE
Q 010599 179 WGAND-------------------GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-------------------~~~l~e~~rvLkPGG~li~~ 203 (506)
..... ..++....++|+|+|.+++.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 43221 24567778899999988775
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=83.67 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=64.1
Q ss_pred CCEEEEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 103 VRTALDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
+.+|||+|||+|.++..++.+ .++++|+++. +.+.|++....+.+...|....++ +++||+|+++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~-----Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT-----YYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH-----HHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 458999999999999887653 4788888664 445555444456677777765554 568999999876
Q ss_pred ccccCC-C----------hHHHHHHHHHhcCCCeEEEE
Q 010599 176 LIPWGA-N----------DGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 176 l~~~~~-~----------~~~~l~e~~rvLkPGG~li~ 202 (506)
+..... + ...++..+.+++++|+. |+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 642211 1 13578888887777775 54
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-06 Score=84.66 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccc
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI 158 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~ 158 (506)
..+.+++.+...+... .. +|||+|||+|..+..++.. .|+++|+|+.-+. .+.+.+...++ +..+...+.
T Consensus 95 dTe~Lve~~l~~~~~~--~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~-~A~~Na~~~~l~~~~~~~~dl- 169 (280)
T COG2890 95 DTELLVEAALALLLQL--DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALA-LARENAERNGLVRVLVVQSDL- 169 (280)
T ss_pred chHHHHHHHHHhhhhc--CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHH-HHHHHHHHcCCccEEEEeeec-
Confidence 3355656554333222 11 7999999999999999876 5899999885443 33345555564 223333221
Q ss_pred cCCCCCCCeeEEEEcCcccccC----------CCh--------------HHHHHHHHHhcCCCeEEEEEcC
Q 010599 159 KMPYASRAFDMAHCSRCLIPWG----------AND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~~----------~~~--------------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.-+. .+.||+|+||.-..+-. .+| ..++.++.+.|+|||.+++...
T Consensus 170 f~~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 170 FEPL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1122 34899999987654422 011 1678889999999999999754
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=91.58 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=73.8
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC--CC
Q 010599 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP--YA 163 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp--~~ 163 (506)
+...+.. .++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...+.. +.+...|...++ ++
T Consensus 242 v~~~l~~--~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 242 VAPALDP--KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHhCC--CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc
Confidence 4444433 33458999999999999888764 3899999886664443 334444543 566667776553 33
Q ss_pred CCCeeEEEEcCccc------c-----cCCC----------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 164 SRAFDMAHCSRCLI------P-----WGAN----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~~~l~------~-----~~~~----------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++||+|++..... + |... ...+|.++.++|||||.|+.++...
T Consensus 319 -~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 319 -EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred -ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 6899999743110 0 1011 1357999999999999999876433
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.7e-06 Score=79.14 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=75.5
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp~~ 163 (506)
.|...+.+.+ +.+|||.|.|+|.++.+|+.. .++++++-+.....+..++..- ++. +.+...|....-++
T Consensus 85 ~I~~~~gi~p--g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLGISP--GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcCCCC--CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-ccccceEEEeccccccccc
Confidence 3555554444 459999999999999999953 4888888664443333333322 222 55566666665555
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. .||+|+.- .++|..++..+..+|||||.+++-.|..
T Consensus 162 ~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 162 E-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred c-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 5 89999873 2467899999999999999999988755
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=83.20 Aligned_cols=102 Identities=20% Similarity=0.379 Sum_probs=65.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCC------------------------
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVP------------------------ 149 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~----~~~~~------------------------ 149 (506)
.+..+|||||..|.++..+++. .+.++||++.-+..|..+... +....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3458999999999999999886 589999977655444332211 00000
Q ss_pred ------------eEEEEeccccCCCCCCCeeEEEEc----CcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010599 150 ------------AVIGVLGTIKMPYASRAFDMAHCS----RCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 150 ------------~~~~~~d~~~lp~~~~sfDlV~~~----~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
..++.....-+.+....||+|+|. ++...|.++. ..+++.+.+.|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000111111223445689999984 3323445544 79999999999999999987
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=92.57 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CCCceeEEEEc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p~s~D~v~~~ 422 (506)
.+..+|||+|||+|+++.++++.-.....|+++|.++++++.+.++ |+. .+...+.++.. ++++||+|.++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence 4456899999999999988877421125899999999999887664 331 12222333332 34799999975
Q ss_pred cccc---cccCCC---------CH-------HHHHHHHhhcccCCcEEEEEeC-h---hhHHHHHHHHhcC-CceE
Q 010599 423 GLFS---LYKDKC---------NI-------EDILLEMDRILRPEGAIIIRDE-V---DEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 423 ~~~~---~~~~~~---------~~-------~~~l~e~~RvLrPgG~~ii~d~-~---~~~~~~~~~~~~~-~w~~ 474 (506)
.-.+ .+.+.. ++ ..+|.++.|+|||||.++.+.- . +....++.++++. .|+.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 3211 111111 11 2589999999999999997532 1 2344566666654 3554
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=88.14 Aligned_cols=103 Identities=12% Similarity=0.010 Sum_probs=68.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHH--HHH-H----cCCCeEEEEecccc-CCCCCCCee
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQ--FAL-E----RGVPAVIGVLGTIK-MPYASRAFD 168 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~--~a~-~----~~~~~~~~~~d~~~-lp~~~~sfD 168 (506)
..+++||+||||+|..++.+++. .++++|+++.++..+... +.. . ....+.+.+.|... +.-..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 34569999999999998888875 488898877555433310 000 0 13456666777654 344456899
Q ss_pred EEEEcCcccccCC-----ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 169 MAHCSRCLIPWGA-----NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~-----~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|++... .+... ....+++.+.+.|+|||.|++..
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9998742 12110 01468999999999999998864
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.5e-06 Score=83.08 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccc-----eecccccc----CCCCCCceeEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIG-----IYHDWCEA----FSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~-----~~~~~~~~----~~~~p~s~D~v 419 (506)
...++||++|||+|+++..+.+.. .+.+++.+|.++++++.+.+.- ..+ .+.-..++ +...+++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345699999999999998887753 2468999999999999887741 100 00000111 11235799999
Q ss_pred EEccccccccCCCC--HHHHHHHHhhcccCCcEEEEE
Q 010599 420 HAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.++....... ... ...++..+.++|+|||.+++.
T Consensus 150 i~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865433211 112 357889999999999999995
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=82.49 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=83.3
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccCCC----C-CCc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFST----Y-PRT 415 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~~~----~-p~s 415 (506)
...+.++|||+|||+|.-+..|+..-.....|+.+|.+++++++|.+. |+-. ... +..+.++. . +.+
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 334467899999999987666654211125899999999999988764 3311 111 11111221 1 368
Q ss_pred eeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----------------hhHHHHHH----HHhcCCceE
Q 010599 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------DEIIKVKK----IVGGMRWDT 474 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------~~~~~~~~----~~~~~~w~~ 474 (506)
||+|+.... .......+.++.+.|||||.+++-+.. .....|++ +...-+|.+
T Consensus 145 fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~ 218 (234)
T PLN02781 145 FDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEI 218 (234)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEE
Confidence 999998221 124457889999999999998873211 01223333 344557777
Q ss_pred EEeecCCCCCCCeEEEEEEec
Q 010599 475 KMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.+....|| +++++|.
T Consensus 219 ~~lp~gdG------~~i~~k~ 233 (234)
T PLN02781 219 SQISIGDG------VTLCRRL 233 (234)
T ss_pred EEEEeCCc------cEEEEEe
Confidence 77665544 5666664
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.35 E-value=7e-07 Score=84.22 Aligned_cols=103 Identities=22% Similarity=0.376 Sum_probs=59.8
Q ss_pred CCCEEEEECCCCC----hhHHHHhhC---------CcEEEecCccchHHHHHHH------------HHHc------C---
Q 010599 102 TVRTALDTGCGVA----SWGAYLWSR---------NVIAMSFAPRDSHEAQVQF------------ALER------G--- 147 (506)
Q Consensus 102 ~~~~VLDiGCG~G----~~~~~L~~~---------~v~~vdis~~dl~~~~~~~------------a~~~------~--- 147 (506)
..-+|+..||++| +++..|.+. .+.++|+++..+..+..-. ..++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 444445451 3677777665443332200 0000 0
Q ss_pred -------CCeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 148 -------VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 -------~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.|...+....+.+.+.||+|+|.++++++.+.. ..+++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 125666667666334567899999999999986544 789999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-06 Score=84.90 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=67.2
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~D~v~~~~ 423 (506)
....+|||+|||+|+.+..|++.-.....|+++|.++.+++.+.++ |+ ..+...+.+ ++.....||.|.++-
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 3456799999999999988876311123799999999999877665 33 112222233 222236799998743
Q ss_pred ccccc---cCCC---------CH-------HHHHHHHhhcccCCcEEEEEe
Q 010599 424 LFSLY---KDKC---------NI-------EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~---~~~~---------~~-------~~~l~e~~RvLrPgG~~ii~d 455 (506)
=.+-. .... ++ ..+|.++.+.|||||+|+.+.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22211 0110 11 249999999999999999863
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-07 Score=86.01 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-- 413 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-- 413 (506)
+.+++..+...+..+|||||||+|.+++.|+.....+..|+.+|..+..++.|.++ |+ ..+...+.+. ..++
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccC
Confidence 44455555556667899999999999998876322235789999998888888776 22 1111122221 1233
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
..||.|+++.... .++ .++.+-|||||+|++-
T Consensus 140 apfD~I~v~~a~~------~ip---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTAAVP------EIP---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp -SEEEEEESSBBS------S-----HHHHHTEEEEEEEEEE
T ss_pred CCcCEEEEeeccc------hHH---HHHHHhcCCCcEEEEE
Confidence 7899999965554 222 3455669999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-06 Score=84.45 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEeccccC-C-CCCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM-P-YASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~l-p-~~~~sfDlV~ 171 (506)
.+++||+||||.|..+..+++. +++.+|+++..+..+...+... ....+.+...|.... . .+++.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3568999999999999999876 4778888775444333322221 123466666775322 1 2356899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010599 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... .+.... ...+++.+.+.|+|||.++...
T Consensus 171 ~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 8542 232221 1468999999999999998753
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-06 Score=78.68 Aligned_cols=135 Identities=21% Similarity=0.336 Sum_probs=93.1
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH----hcCc----cceecccccc-------CCCCCCceeEE
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGL----IGIYHDWCEA-------FSTYPRTYDLI 419 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~----~rg~----~~~~~~~~~~-------~~~~p~s~D~v 419 (506)
+||.||||||.-+++++.. ...+.-.|.|..+..+.-+. +.|+ .....|.+.. .+..+++||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999988888763 23367889998876654333 3343 1222222222 12245799999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEE------------------------EeCh---hhHHHHHHHHhcCCc
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII------------------------RDEV---DEIIKVKKIVGGMRW 472 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii------------------------~d~~---~~~~~~~~~~~~~~w 472 (506)
+|.++++... +...+.++.+..++|+|||.|++ +|+. ..++.|.+++.+.++
T Consensus 107 ~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999987555 55568899999999999999999 2221 256789999999888
Q ss_pred eEEEeecCCCCCCCeEEEEEEe
Q 010599 473 DTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~k 494 (506)
+.. +..+-| ....+||.+|
T Consensus 186 ~l~--~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELE--EDIDMP-ANNLLLVFRK 204 (204)
T ss_pred ccC--cccccC-CCCeEEEEeC
Confidence 832 233333 4567888876
|
The function of this family is unknown. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-06 Score=82.91 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=72.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceec--cccccCCCCC-CceeEEEEc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYH--DWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~--~~~~~~~~~p-~s~D~v~~~ 422 (506)
...+|||+|||||+|+..|++.+ +..|+++|.+++|+........ ..++. .|.+ ++ .+ ..+|++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-~d~~~~Dvsfi- 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-PDFATFDVSFI- 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-CCceeeeEEEe-
Confidence 34589999999999999999876 3689999999888875333211 11111 1222 21 12 47777776
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEE-------------------EeCh---hhHHHHHHHHhcCCceEE
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIII-------------------RDEV---DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii-------------------~d~~---~~~~~~~~~~~~~~w~~~ 475 (506)
.+..+|..|.+.|+| |.+++ +|.. ..++++...+.+.+|.+.
T Consensus 150 ----------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 150 ----------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ----------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 223378899999999 87776 2322 256677777888999865
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-06 Score=84.89 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=77.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~ 162 (506)
+.+.+.+.+++... .+.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...++ ++.+...|+..+..
T Consensus 159 ~~l~~~v~~~l~~~--~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 159 AQLYATARDWVREL--PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHH
Confidence 45555555665322 2358999999999999999987 4889999887765444 34444455 36777888765432
Q ss_pred -CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010599 163 -ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 163 -~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
..++||+|++.... .. ....+.++...++|++.++++..+...
T Consensus 236 ~~~~~~D~Vv~dPPr---~G-~~~~~~~~l~~~~~~~ivyvsc~p~t~ 279 (315)
T PRK03522 236 AQGEVPDLVLVNPPR---RG-IGKELCDYLSQMAPRFILYSSCNAQTM 279 (315)
T ss_pred hcCCCCeEEEECCCC---CC-ccHHHHHHHHHcCCCeEEEEECCcccc
Confidence 34579999987431 11 122333444557899999999877633
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-06 Score=88.93 Aligned_cols=104 Identities=19% Similarity=0.220 Sum_probs=70.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cc----eecc-ccccCCC-----C
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IG----IYHD-WCEAFST-----Y 412 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~----~~~~-~~~~~~~-----~ 412 (506)
...+|||||||-||-..-....+ +..++++|++...|+.|.+|.- .. .... .+..+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56789999999999766666654 4689999999999999999860 00 0000 1111211 2
Q ss_pred C---CceeEEEEccccccccC-CCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 413 P---RTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 413 p---~s~D~v~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+ ..||+|-|...|++.-. .......|..+...|||||+||.+-+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2 59999999999986542 234567999999999999999998654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.8e-06 Score=79.36 Aligned_cols=128 Identities=17% Similarity=0.249 Sum_probs=85.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----Cccce-eccccccCCCCCCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIGI-YHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~-~~~~~~~~~~~p~s~D~v~~~~~~ 425 (506)
...++||.|||.|..+..|.-+- .-.|.-+|..+..++.|.+. .-++. +..=-++|..-+..||+|.+.-++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46789999999999999886643 24567777888999999843 22222 211112332223799999998888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----------h-----hHHHHHHHHhcCCceEEEeecCCC
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------D-----EIIKVKKIVGGMRWDTKMVDHEDG 482 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------~-----~~~~~~~~~~~~~w~~~~~~~~~~ 482 (506)
.|+. -.++...|......|+|+|.++|.+.. + ..+.++++++++++++...+...|
T Consensus 133 ghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 133 GHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp GGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred ccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 8776 336788999999999999999995432 1 568899999999999877665544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=74.15 Aligned_cols=104 Identities=18% Similarity=0.074 Sum_probs=70.2
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccc-cCCCCCC
Q 010599 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KMPYASR 165 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~-~lp~~~~ 165 (506)
....|.. .++..++|||||+|+.+..++.. .++++|-++..+.... +++..-+.+ +.+..+++- .|+-.+
T Consensus 26 ~ls~L~~--~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~- 101 (187)
T COG2242 26 TLSKLRP--RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP- 101 (187)
T ss_pred HHHhhCC--CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-
Confidence 4455533 34559999999999999998832 5888888765443333 333333444 444445542 333222
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||.|+.... .....+|+.+...|||||.++...
T Consensus 102 ~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 102 SPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 7999999775 224789999999999999999974
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.1e-06 Score=77.30 Aligned_cols=121 Identities=8% Similarity=-0.007 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecc
Q 010599 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGT 157 (506)
Q Consensus 82 ~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~ 157 (506)
....+...+.+.+.+... ..+.+|||+|||+|.++..++.+ .++++|+++..+..+. +.+...+. ++.+...|.
T Consensus 34 Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~-~Nl~~~~~~~v~~~~~D~ 111 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI-KNLATLKAGNARVVNTNA 111 (199)
T ss_pred CcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEEchH
Confidence 344566656666655311 23458999999999999865443 4888999875443333 33333333 356666665
Q ss_pred cc-CCCCCCCeeEEEEcCcccccCCChHHHHHHHHH--hcCCCeEEEEEcCC
Q 010599 158 IK-MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDR--VLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~-lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~r--vLkPGG~li~~~p~ 206 (506)
.. ++...++||+|++..-+.. .-...++..+.. +|+|+|.++++.+.
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 43 3323457999999875311 112455555544 37999999998654
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-06 Score=80.87 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=74.3
Q ss_pred hhhhhhhhhHHHHHHHH-HHhhhcCCCCCceEEeecCcccH----HHHHHHh----CCCeEEEEeecCCCcccHHHHHhc
Q 010599 326 SYQEDSNKWKKHVNAYK-KINRLLDSGRYRNIMDMNAGFGG----FAAAIQS----SKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 326 ~f~~~~~~W~~~v~~y~-~~~~~i~~~~~~~vLD~gcG~G~----~~~~l~~----~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.|-.|...|+....... .++.....++.-+|..+||+||. +|..|.+ ...|-..+.++|+++.+|+.|++
T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~- 82 (196)
T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA- 82 (196)
T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-
T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-
Confidence 46666777776655543 23332333445689999999997 3444444 23346899999999999998854
Q ss_pred Cccc------------------------------------eeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHH
Q 010599 397 GLIG------------------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLE 440 (506)
Q Consensus 397 g~~~------------------------------------~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e 440 (506)
|..+ ..|++.+ .+...+.||+|.|-+||-... ...-..++..
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHH
Confidence 3200 1122222 112238999999999998554 3345689999
Q ss_pred HhhcccCCcEEEEEeCh
Q 010599 441 MDRILRPEGAIIIRDEV 457 (506)
Q Consensus 441 ~~RvLrPgG~~ii~d~~ 457 (506)
+++.|+|||+|++-...
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999996543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=80.86 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=78.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh---cCccc---eeccccccCCCCCCceeEEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGLIG---IYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~---rg~~~---~~~~~~~~~~~~p~s~D~v~~ 421 (506)
+..++..+|||+||++|+|+..+.++......|+++|..+. -....- +|-+. ......+.++.....||+|.|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-ccccceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence 45556789999999999999999998756789999998843 111000 11110 111111112211269999999
Q ss_pred ccccccccCCC-C----H---HHHHHHHhhcccCCcEEEEEe-----ChhhHHHHHHHHhcCCceEEEeecCCCCCCCeE
Q 010599 422 HGLFSLYKDKC-N----I---EDILLEMDRILRPEGAIIIRD-----EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEK 488 (506)
Q Consensus 422 ~~~~~~~~~~~-~----~---~~~l~e~~RvLrPgG~~ii~d-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 488 (506)
+..+....++. + + ...|.=+...|||||.+++.- ....+..++..++..++. .... .++.+.|.
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp~~-sr~~s~E~ 174 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KPPS-SRSESSEE 174 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E-TT-SBTTCBEE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--ECcC-CCCCccEE
Confidence 88666443221 1 1 134444557799999999842 224556666666654443 2211 23345788
Q ss_pred EEEEEe
Q 010599 489 ILVAVK 494 (506)
Q Consensus 489 ~l~~~k 494 (506)
+|+|++
T Consensus 175 Ylv~~~ 180 (181)
T PF01728_consen 175 YLVCRG 180 (181)
T ss_dssp EEESEE
T ss_pred EEEEcC
Confidence 888874
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=76.61 Aligned_cols=120 Identities=10% Similarity=0.142 Sum_probs=81.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH----hcCccceeccccccC---CCCCCceeEEEEccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGLIGIYHDWCEAF---STYPRTYDLIHAHGLFS 426 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~----~rg~~~~~~~~~~~~---~~~p~s~D~v~~~~~~~ 426 (506)
.+|||+|||-|.+...|++.+.. ..++++|-|+..+..|. .+|+...+..-..++ .+.+..||+|+=-+.+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 38999999999999999998743 44999999998887543 335422111111111 12447888887655444
Q ss_pred ccc-C----CCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceE
Q 010599 427 LYK-D----KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 427 ~~~-~----~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~ 474 (506)
... + ...+...+--+.++|+|||.++|+--+=..++|.+.+...++..
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEE
Confidence 211 1 11234577888999999999999877766778888777777663
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.7e-06 Score=91.21 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=80.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-cc---------ceecccccc----CCCCCCcee
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI---------GIYHDWCEA----FSTYPRTYD 417 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~---------~~~~~~~~~----~~~~p~s~D 417 (506)
+.++|||+|||+|..+..+.+.+ .+..|+.+|.+++|++.+++.- +. ..++-.+++ +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999998888753 2368999999999999998731 10 111111122 122458999
Q ss_pred EEEEccccccccC--CCCHHHHHHHHhhcccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEE
Q 010599 418 LIHAHGLFSLYKD--KCNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 418 ~v~~~~~~~~~~~--~~~~~~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~ 475 (506)
+|.++........ +---+.++.++.|.|||||.+++... .+....+.+.+++.++.+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9999643321110 11113588999999999999999532 2344566666777777443
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.7e-06 Score=79.03 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=87.7
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Cccc--------------eeccccccCCCCC-
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIG--------------IYHDWCEAFSTYP- 413 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~~--------------~~~~~~~~~~~~p- 413 (506)
.....+||+.|||.|.-+..|+++| .+|+++|+|+..++.++++ ++.. .+..+|.+|=.++
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3445689999999999999999987 6999999999999988554 4311 1223455654433
Q ss_pred ---CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE--Ee-----C--hh---hHHHHHHHHhcCCceEEEee
Q 010599 414 ---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--RD-----E--VD---EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 ---~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii--~d-----~--~~---~~~~~~~~~~~~~w~~~~~~ 478 (506)
+.||+|+=...|..+. ...=+....-|.++|||||.+++ -+ . .+ ..++|++++. -+|++....
T Consensus 112 ~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred hhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 5799999877776554 34446799999999999999433 11 1 11 5678888888 888877554
Q ss_pred c
Q 010599 479 H 479 (506)
Q Consensus 479 ~ 479 (506)
.
T Consensus 190 ~ 190 (218)
T PF05724_consen 190 E 190 (218)
T ss_dssp E
T ss_pred c
Confidence 4
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=83.47 Aligned_cols=122 Identities=9% Similarity=0.048 Sum_probs=86.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-Cc--------------cceeccccccCCCCC----
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GL--------------IGIYHDWCEAFSTYP---- 413 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~--------------~~~~~~~~~~~~~~p---- 413 (506)
..+||+.|||.|.-+..|++.| ..|+++|+|+..++.++++ ++ -..+..+|.+|=.++
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4589999999999999999988 5799999999999887663 11 112334456554443
Q ss_pred --CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE----eCh----h---hHHHHHHHHhcCCceEEEeec
Q 010599 414 --RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR----DEV----D---EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 414 --~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~----d~~----~---~~~~~~~~~~~~~w~~~~~~~ 479 (506)
+.||+|+=..+|.++. ...=......|.++|||||.+++- +.. + ..++|++++. -.|++..+..
T Consensus 121 ~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~-~~~~i~~l~~ 197 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFS-AKIKFELIDS 197 (226)
T ss_pred ccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhcc-CCceEEEeee
Confidence 4799999888888664 223357999999999999988872 111 1 4467777764 4566555443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=81.27 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=69.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-c------ceecccccc----CCCC-CCceeE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-I------GIYHDWCEA----FSTY-PRTYDL 418 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~------~~~~~~~~~----~~~~-p~s~D~ 418 (506)
...++||+||||.|+.+..+.+.+ .+.+|+.+|+++++++.+++.-. . ..+.-.+++ +... ++.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 346789999999999999998763 35688999999899999877521 0 011111222 2223 378999
Q ss_pred EEEccccccccCCCC--HHHHHHHHhhcccCCcEEEE
Q 010599 419 IHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 419 v~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii 453 (506)
|.++..-.... ... -..++..+.+.|+|||.+++
T Consensus 169 Ii~D~~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 169 IIVDSSDPVGP-AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEcCCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99854332211 111 24689999999999999987
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=77.13 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeE-EEEecccc
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~-~~~~d~~~ 159 (506)
+...+ ..+.+.++. ...+.+|||+|||+|.|+..++++ .++++|+++.++..... ....+. +...++..
T Consensus 59 ~~~kL-~~~l~~~~~-~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~-----~~~~v~~~~~~ni~~ 131 (228)
T TIGR00478 59 GGEKL-KEALEEFNI-DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR-----QDERVKVLERTNIRY 131 (228)
T ss_pred hHHHH-HHHHHhcCC-CCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh-----cCCCeeEeecCCccc
Confidence 33434 444444432 234568999999999999999987 38899998765544221 222211 22223332
Q ss_pred -----CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 160 -----MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 160 -----lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+..-..||+++++.++ .+..+.+.|+| |.+++-.
T Consensus 132 ~~~~~~~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 132 VTPADIFPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCHhHcCCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 22222367877776533 47889999999 8777655
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=78.67 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
...++..+.+.. .+++|||+|||+|+-+..++.. .++++|+++.....+. +...+.+.. +.+..+++
T Consensus 56 ~g~~L~~l~~~~-----~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 56 EGLFLSMLVKIM-----NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred HHHHHHHHHHHh-----CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccH
Confidence 344555555544 2458999999999877766543 4899999885554333 333344443 55666665
Q ss_pred ccC-C-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 158 IKM-P-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 158 ~~l-p-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
... + .+.++||+|++..- .+....++.++.+.|||||.+++.
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 332 2 12468999998531 122367899999999999998875
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.8e-06 Score=86.46 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=76.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc---
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK--- 159 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~--- 159 (506)
+.+.+.+.+.+... ++.+|||+|||+|.++..|++. .++++|+++.++..+..+ +...+. ++.+...|...
T Consensus 278 ~~l~~~~~~~l~~~--~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n-~~~~~~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 278 EKLVDRALEALELQ--GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQN-AELNGIANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHhccC--CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHH-HHHhCCCceEEEeCCHHHHHH
Confidence 45556666666432 3358999999999999999875 589999988776544433 333444 46677777643
Q ss_pred -CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 160 -MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 -lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++.+++||+|+..... ..-...+++.+.+ |+|++.++++..|.
T Consensus 355 ~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc~p~ 399 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-LKPERIVYVSCNPA 399 (431)
T ss_pred HHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-cCCCEEEEEcCCHH
Confidence 23445689999976432 1112566666554 89999888886544
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.8e-06 Score=77.48 Aligned_cols=104 Identities=8% Similarity=0.018 Sum_probs=66.6
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC---CceeEEE
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP---RTYDLIH 420 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p---~s~D~v~ 420 (506)
+..+......+|||+|||+|.++..|++++ ..|+++|.++.|++.+.++.. ...+.-...++..++ ..||.|.
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEE
Confidence 333444455689999999999999999874 589999999999999887631 111112223443333 4699999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++--++.. ...+..++.+. .+.++|.+++..
T Consensus 83 ~n~Py~~~--~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 83 GNLPYNIS--TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred ECCCcccH--HHHHHHHHhcC--CCcceEEEEEEH
Confidence 86554421 11223333322 256899998854
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=85.83 Aligned_cols=119 Identities=13% Similarity=0.224 Sum_probs=79.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CC--C-CCce
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----ST--Y-PRTY 416 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~--~-p~s~ 416 (506)
+...+..+|||+|||+|.++..|++.. ..|+++|.|++|++.|.+. |+ ..+...+.++ +. + +++|
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCC
Confidence 333344689999999999999998864 5799999999999988764 22 1222333332 21 2 3689
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
|+|.++ +++..+..++..+.+ |+|++.++|+-... ....+..+. ..+|++..+.
T Consensus 369 D~Vi~d------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~-~~gY~l~~i~ 423 (443)
T PRK13168 369 DKVLLD------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV-EAGYRLKRAG 423 (443)
T ss_pred CEEEEC------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh-hCCcEEEEEE
Confidence 999881 123345667766666 69999999985543 445555543 4568866443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=89.41 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=69.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc--------------C--CCeEEEEeccccCCC
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER--------------G--VPAVIGVLGTIKMPY 162 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~--------------~--~~~~~~~~d~~~lp~ 162 (506)
+.+|||+|||+|.++..|+.+ .++++|+++..+..+..+..... . ..+.+...|.....-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 458999999999999999875 48999999977755554443311 0 135666666643221
Q ss_pred C-CCCeeEEEEcCcccccC---------------------------------CCh----HHHHHHHHHhcCCCeEEEEEc
Q 010599 163 A-SRAFDMAHCSRCLIPWG---------------------------------AND----GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~-~~sfDlV~~~~~l~~~~---------------------------------~~~----~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ...||+|+|+...+.-. .+. ..++.++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999975543110 111 367788889999999999986
Q ss_pred C
Q 010599 205 P 205 (506)
Q Consensus 205 p 205 (506)
.
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 4
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=86.76 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHH--HHH-H----cCCCeEEEEecccc-CCCCCCCeeE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQ--FAL-E----RGVPAVIGVLGTIK-MPYASRAFDM 169 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~--~a~-~----~~~~~~~~~~d~~~-lp~~~~sfDl 169 (506)
++++|||||||+|..+..++++ .++++|+++.++..+... +.. . ...++.+...|... +...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4568999999999999988765 478888877655433321 110 0 12345666677654 2333568999
Q ss_pred EEEcCcccccCCCh-----HHHHHHHHHhcCCCeEEEEEcC
Q 010599 170 AHCSRCLIPWGAND-----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~-----~~~l~e~~rvLkPGG~li~~~p 205 (506)
|++.... +..+.. ..+++.+.+.|||||.+++...
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9997532 222211 3688999999999999998753
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.5e-06 Score=79.66 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=66.3
Q ss_pred CceEEeecCcccHHHHHHHhCC--CeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~--~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~D~v~~~~~~~~~ 428 (506)
..+|||+|||+|.++..++..- ....+|+++|+++.++..|.+... ..+....++-.+ +.+||+|.++-=|.-.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhcccccCCccEEEECCCCCCc
Confidence 3479999999999998887531 013589999999999999986531 122333555433 4799999997655522
Q ss_pred c-----CC---CC-HHHHHHHHhhcccCCcEEEE
Q 010599 429 K-----DK---CN-IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 429 ~-----~~---~~-~~~~l~e~~RvLrPgG~~ii 453 (506)
. .+ .. ...++....|+|+||+. |+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 11 12 23588888897777775 66
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-05 Score=89.39 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=71.4
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccC-CCCCCCeeEEEEcCc
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM-PYASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~l-p~~~~sfDlV~~~~~ 175 (506)
+.+|||+|||+|.++..++.. .|+++|+|+..+..+..+... ++. .+.+...|..+. .-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 458999999999999999876 388999998777555544433 344 366777776432 111468999999643
Q ss_pred ccccC----------CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 176 LIPWG----------ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~----------~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...-. .+...++..+.++|+|||.+++++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 21100 11146788889999999999987643
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.5e-06 Score=82.58 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=78.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p~s~D~v~~~~~ 424 (506)
..+|||+|||+|.++..|+.++ ..|+++|.++.|++.|.+. |+ ..++..+.++.. .+..||+|.++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 3679999999999999999865 5899999999999988654 33 223333444332 22579999984
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
+++..+...+.++..-++|++.++++.... ..+.++.+ -+|++..+.
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEE
Confidence 245555445555556689999999976554 34555554 478866443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=84.90 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=80.2
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCC---C
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STY---P 413 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~---p 413 (506)
...+...+..+|||+|||+|.++..|++.. ..|+++|.++.|++.|.+. |+ ..++..+.++ +.+ +
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcC
Confidence 333333445689999999999999998754 4799999999999988764 22 2222222322 222 2
Q ss_pred CceeEEEEccccccccCCCC-HHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEee
Q 010599 414 RTYDLIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~-~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
++||+|..+- ++.. ...++.++.+ |+|+|.++++........--..+...+|++..+.
T Consensus 361 ~~~D~vi~dP------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 361 QIPDVLLLDP------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred CCCCEEEECc------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEEE
Confidence 5799998711 2233 3566666655 8999999998766555444444556678866543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=74.61 Aligned_cols=120 Identities=17% Similarity=0.071 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHhhC----CCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC----CCe
Q 010599 83 QGADKYIDQLASVI----PIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG----VPA 150 (506)
Q Consensus 83 ~~~~~~~~~i~~~l----~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~----~~~ 150 (506)
+++..+.+.+.+.. ......+.+|||+|||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccc
Confidence 44544444454432 112234569999999999777777665 588899876 3333334444332 233
Q ss_pred EEEEecccc-C---CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 151 VIGVLGTIK-M---PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 151 ~~~~~d~~~-l---p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+...+-.. . ....++||+|+++.++.. ......++.-+.++|+|+|.++++.+
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCcEEEecCcccccccccccCCEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 444443211 1 123468999999999843 44448899999999999999777653
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=84.32 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=67.5
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccCC----CCCCCeeEEEE
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKMP----YASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~lp----~~~~sfDlV~~ 172 (506)
+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+..+++ .+.+..+|+.... ...++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~-N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999998776544 48999999877655443 3334444 3567777765431 13568999999
Q ss_pred cCcccccCCCh----------HHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPWGAND----------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~----------~~~l~e~~rvLkPGG~li~~~ 204 (506)
.... +.... ..++..+.++|+|||.|++.+
T Consensus 300 DPP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7543 11211 244556789999999999865
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=80.24 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeE--EEEeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAV--IGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.+++|||||||+|.++...++. .|.+++.|. +..-+.+.+..++.... +..+.++.+.+|-.+.|+|++-+.-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4569999999999988888876 478888864 44555667777776643 3344455555556799999996654
Q ss_pred cccC--CChHHHHHHHHHhcCCCeEEEE
Q 010599 177 IPWG--ANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~--~~~~~~l~e~~rvLkPGG~li~ 202 (506)
..+. .-....|-.-.+.|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2211 1124566666899999998763
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=82.18 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=77.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccCCC----C---CCceeEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~~~----~---p~s~D~v~ 420 (506)
.++|||+|||+|+|+.+.+..+ ...|+++|.++.+++.|.+. |+. ..+...+.++-. + .++||+|.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4679999999999987655544 24899999999999988764 321 122222232211 1 35899999
Q ss_pred EccccccccCC-------CCHHHHHHHHhhcccCCcEEEEEeC------hhhHHHHHHHHhcCCceEEEee
Q 010599 421 AHGLFSLYKDK-------CNIEDILLEMDRILRPEGAIIIRDE------VDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~~~~~~~~~-------~~~~~~l~e~~RvLrPgG~~ii~d~------~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
++-=.- ...+ .+...++....++|+|||.++.... ....+.+.+-+...+-++.++.
T Consensus 299 lDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 299 MDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred ECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 952211 0111 1234556667899999999998432 1244555556777777766654
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-05 Score=80.39 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=74.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC-
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP- 161 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp- 161 (506)
+.+.+.+.+++... .+.+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+. ++.+...|+....
T Consensus 219 ~~l~~~~~~~l~~~--~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~ 295 (374)
T TIGR02085 219 AQLYATARQWVREI--PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFAT 295 (374)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHH
Confidence 44445555554211 2358999999999999999876 4889999886664333 44444444 4677777765432
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
-..++||+|++.... ..-...++..+. .++|++.++++..|.
T Consensus 296 ~~~~~~D~vi~DPPr---~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 296 AQMSAPELVLVNPPR---RGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred hcCCCCCEEEECCCC---CCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 122469999987543 221245555554 479999999997655
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-05 Score=74.58 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhhCCCC-CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEe---
Q 010599 84 GADKYIDQLASVIPIK-NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVL--- 155 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~--- 155 (506)
..+.+++.+.+.+... ...+..+||+|||+|..+..++.. .++++|.|+..+.-+. ++++...+...+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~ 207 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNI 207 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecc
Confidence 3467777777776422 123347999999999988888764 4788887764443222 222222333222222
Q ss_pred -cc---ccCCCCCCCeeEEEEcCcccccCCChH--------------------------HHHHHHHHhcCCCeEEEEEcC
Q 010599 156 -GT---IKMPYASRAFDMAHCSRCLIPWGANDG--------------------------RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 156 -d~---~~lp~~~~sfDlV~~~~~l~~~~~~~~--------------------------~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ...+...+.+|+++|+.-++. .+|.. .++.-+.|.|+|||.+.+...
T Consensus 208 me~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11 233456789999999875532 11111 456778899999999999854
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=8e-05 Score=71.11 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEE-ec
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGV-LG 156 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~-~d 156 (506)
.-.++..+++.. ..++|||||.+.|+-+.+|+.. .++++|+++.....+...+++ .|+. +.... +|
T Consensus 47 ~g~~L~~L~~~~-----~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLARLS-----GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGD 120 (219)
T ss_pred HHHHHHHHHHhc-----CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCc
Confidence 344545555444 3458999999999999998864 389999988666554444443 3443 33333 24
Q ss_pred cc-cCC-CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 157 TI-KMP-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 157 ~~-~lp-~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+. .+. ...++||+|+.- +...+-..++..+.++|+|||.+++.
T Consensus 121 al~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 32 222 456899999974 33344478999999999999999985
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.2e-06 Score=77.99 Aligned_cols=123 Identities=12% Similarity=0.223 Sum_probs=91.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceecccc-ccCCCCCCceeEEEEccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWC-EAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~-~~~~~~p~s~D~v~~~~~~~~~ 428 (506)
.-.++|+|||.|..+.+|...+ +..++-+|.|..|++.++.-. +...+..-- |.+++-+++||+|.++..+++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 4569999999999999999987 478899999999999887763 322222222 3344445999999996666533
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEE----eCh-------------------------hhHHHHHHHHhcCCceEEEeec
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIR----DEV-------------------------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~----d~~-------------------------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
. +++..|...+-+|||.|.||-+ |++ ..+..+-.++.+++++...+|+
T Consensus 151 N---dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 151 N---DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred c---cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence 2 6788999999999999999872 221 1445667789999999776665
Q ss_pred C
Q 010599 480 E 480 (506)
Q Consensus 480 ~ 480 (506)
+
T Consensus 228 D 228 (325)
T KOG2940|consen 228 D 228 (325)
T ss_pred c
Confidence 4
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=76.83 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=74.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccceecccccc----CCCC-C-CceeEEEEcc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWCEA----FSTY-P-RTYDLIHAHG 423 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~~~~~~~~~----~~~~-p-~s~D~v~~~~ 423 (506)
..+|+||||.|.|...|+.+. ...|+++++....-+..|.+ .++. ++.-.|.+ ++.+ | +|.|-|+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i-- 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYI-- 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEE--
Confidence 369999999999999998764 23588999887766664444 4541 22222222 2333 3 59999987
Q ss_pred ccc-------cccCCCCHHHHHHHHhhcccCCcEEEEE-eChhhHHH-HHHHHhc
Q 010599 424 LFS-------LYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIK-VKKIVGG 469 (506)
Q Consensus 424 ~~~-------~~~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~-~~~~~~~ 469 (506)
.|+ |.+.|---...|.++.|+|||||.|.+. |..++.+. +......
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 233 3333333357999999999999999995 55556666 5555444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.3e-05 Score=76.53 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=86.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc----cccCCCC-----CC
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW----CEAFSTY-----PR 414 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~----~~~~~~~-----p~ 414 (506)
+...+.++||++|+|+|..+..|+..-.....|+.+|.+++++++|++- |+-..+.-. .+.++.+ ++
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 3444577999999999999998876211124699999999998877543 442111111 1112222 36
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh------------h---hHHH-HHHHHhcCCceEEEee
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------D---EIIK-VKKIVGGMRWDTKMVD 478 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~---~~~~-~~~~~~~~~w~~~~~~ 478 (506)
+||+|+...- +......+....+.|||||.+++-+.+ . .+.+ .+.+...=++++.+.-
T Consensus 194 ~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP 267 (278)
T PLN02476 194 SYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP 267 (278)
T ss_pred CCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE
Confidence 8999998221 224567888999999999999983221 0 1222 2334667778888876
Q ss_pred cCCCCCCCeEEEEEEec
Q 010599 479 HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 479 ~~~~~~~~~~~l~~~k~ 495 (506)
..|| +++++|+
T Consensus 268 igDG------l~i~~K~ 278 (278)
T PLN02476 268 IGDG------MTICRKR 278 (278)
T ss_pred eCCe------eEEEEEC
Confidence 6643 6666663
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.5e-05 Score=73.79 Aligned_cols=140 Identities=24% Similarity=0.264 Sum_probs=91.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCcc----c-eeccccccCCCCC-Cce
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLI----G-IYHDWCEAFSTYP-RTY 416 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~----~-~~~~~~~~~~~~p-~s~ 416 (506)
.++.....+|||.+.|.|.+|..-.++|. ..|..++-.++.|+.|.- |++. . +.-|..+.+..++ .||
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 45555677899999999999998888874 356666677777776642 2221 1 1112234455666 789
Q ss_pred eEE-EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe--------ChhhHHHHHHHHhcCCceEEEeecCCCCCCCe
Q 010599 417 DLI-HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD--------EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE 487 (506)
Q Consensus 417 D~v-~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 487 (506)
|+| |=--=||+.. .---+.+-.|++|||||||.++=-- -.+....+.+.+.+.++.+.....+.
T Consensus 207 DaIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~------ 279 (287)
T COG2521 207 DAIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREA------ 279 (287)
T ss_pred ceEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhc------
Confidence 965 4433344333 1122578999999999999987622 22356788888999999965544332
Q ss_pred EEEEEEec
Q 010599 488 KILVAVKQ 495 (506)
Q Consensus 488 ~~l~~~k~ 495 (506)
.-++|+|+
T Consensus 280 ~gv~A~k~ 287 (287)
T COG2521 280 LGVVAVKP 287 (287)
T ss_pred cceEEecC
Confidence 23677764
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.1e-05 Score=78.13 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=73.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC-eE-EEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-AV-IGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~-~~-~~~~d~~~lp~~~~ 165 (506)
..+.++.... .|..|||==||||+++....-.| +++.|++..|+..+..++-.- +++ .. ....|+..+|++++
T Consensus 187 R~mVNLa~v~--~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y-~i~~~~~~~~~Da~~lpl~~~ 263 (347)
T COG1041 187 RAMVNLARVK--RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYY-GIEDYPVLKVLDATNLPLRDN 263 (347)
T ss_pred HHHHHHhccc--cCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhh-CcCceeEEEecccccCCCCCC
Confidence 3444544333 34589999999999988876665 555555554444433333222 222 32 33448999999999
Q ss_pred CeeEEEEcCccc-----ccC--CC-hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 166 AFDMAHCSRCLI-----PWG--AN-DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~-----~~~--~~-~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||.|++-.-.= .-. +. -..+|+.+.++||+||++++..|
T Consensus 264 ~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999843210 100 11 15789999999999999999987
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.5e-05 Score=76.98 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCC----hhHHHHhhC---------CcEEEecCccchHHHHHH----HHHHcCCC---------------
Q 010599 102 TVRTALDTGCGVA----SWGAYLWSR---------NVIAMSFAPRDSHEAQVQ----FALERGVP--------------- 149 (506)
Q Consensus 102 ~~~~VLDiGCG~G----~~~~~L~~~---------~v~~vdis~~dl~~~~~~----~a~~~~~~--------------- 149 (506)
..-+|+-+||++| +++..|.+. .|.|+||+...+.+|..- ....++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 344444332 367777766555444321 00101111
Q ss_pred ----------eEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 150 ----------AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 ----------~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.|...+...-++..+.||+|+|-++++++.... ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2333334333332456799999999999986544 689999999999999999953
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3e-05 Score=73.06 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=68.4
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--Cce
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTY 416 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~ 416 (506)
++..+......+||+||||+|..+|-|++-. ..|+.++..+...+.|+++ |+ .+++..+.+-.. +| ..|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCCCCCCCc
Confidence 4444555666889999999999999998853 4899999887777777654 33 123333344332 45 899
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.|+.+......+ .. +.+-|||||++++-
T Consensus 140 D~I~Vtaaa~~vP------~~---Ll~QL~~gGrlv~P 168 (209)
T COG2518 140 DRIIVTAAAPEVP------EA---LLDQLKPGGRLVIP 168 (209)
T ss_pred CEEEEeeccCCCC------HH---HHHhcccCCEEEEE
Confidence 9999966665322 23 34579999999994
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.5e-06 Score=82.07 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=70.3
Q ss_pred CCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCC
Q 010599 103 VRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN 182 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~ 182 (506)
+..+||+|||.|-++..=-.-.+.+.|++. ..+..++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~-----~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCT-----GLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhh-----hhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 558999999999654322111345555543 333444444432 56677999999999999999999999998765
Q ss_pred h--HHHHHHHHHhcCCCeEEEEEc
Q 010599 183 D--GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 183 ~--~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ..+++|+.|+|||||...+.+
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 4 689999999999999987764
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.7e-06 Score=76.87 Aligned_cols=121 Identities=20% Similarity=0.177 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHH--cCCCeEEEEeccc
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALE--RGVPAVIGVLGTI 158 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~--~~~~~~~~~~d~~ 158 (506)
+.+.+.+.+.+.-......+.+|||...|-|+.+...+++| |.+++.++..+.-+.++--.. ....+.+..+|+.
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 34666666666554445567799999999999999999885 567777775543332221000 0112455666765
Q ss_pred cC--CCCCCCeeEEEEcCcccccCCC--hHHHHHHHHHhcCCCeEEEEEc
Q 010599 159 KM--PYASRAFDMAHCSRCLIPWGAN--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 159 ~l--p~~~~sfDlV~~~~~l~~~~~~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++ .|+|.|||+|+--..-...... ...+..|++|+|||||.++-.+
T Consensus 196 e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 196 EVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred HHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 44 4789999999853221111111 1689999999999999998754
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.7e-05 Score=65.86 Aligned_cols=99 Identities=27% Similarity=0.383 Sum_probs=65.3
Q ss_pred EEEECCCCChh--HHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecccc--CCCCC-CCeeEEEEcCccc
Q 010599 106 ALDTGCGVASW--GAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK--MPYAS-RAFDMAHCSRCLI 177 (506)
Q Consensus 106 VLDiGCG~G~~--~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~--lp~~~-~sfDlV~~~~~l~ 177 (506)
+||+|||+|.. ...+... .++++|+++.++......... .... ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444332 356677776555442111111 2221 3555566654 78877 589999 655555
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5444 6889999999999999999976443
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-05 Score=69.37 Aligned_cols=110 Identities=18% Similarity=0.116 Sum_probs=77.5
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC-----cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP- 161 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~-----v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp- 161 (506)
..+.++..+ ...++..|||+|.|+|-++..+++++ +++++.++ .....-.+......+..+|+..+.
T Consensus 36 lA~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~-----dF~~~L~~~~p~~~ii~gda~~l~~ 108 (194)
T COG3963 36 LARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP-----DFVCHLNQLYPGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH-----HHHHHHHHhCCCccccccchhhHHH
Confidence 345566666 34456689999999999999999985 56666655 333344444444556666665443
Q ss_pred ----CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 162 ----YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ----~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+..||.|+|.--+..++.+. -++|+++...|.+||.++.-.
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5677899999976665554444 588999999999999998754
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=68.50 Aligned_cols=138 Identities=17% Similarity=0.320 Sum_probs=89.0
Q ss_pred hhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccH--HHHHHHhCCCeEEEEeecCCCcccHH---HHH-hcCc--c
Q 010599 328 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLG---VIY-ERGL--I 399 (506)
Q Consensus 328 ~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~--~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~-~rg~--~ 399 (506)
.+..+.|.+++..-..++..+..... +++|||+|-|- .-.++.... .+++-+|....-+. .+. +=|+ +
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~---~~~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPD---LQVTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TT---SEEEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CCHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCC---CcEEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 34568898888877766666655544 69999999985 223333333 46888887765544 222 2255 2
Q ss_pred ceeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe---ChhhHHHHHHHHhcCCceEEE
Q 010599 400 GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD---EVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 400 ~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d---~~~~~~~~~~~~~~~~w~~~~ 476 (506)
.+++...|. +.++..||+|.| . ...++..++.-+.+.|||||.+++-- ..+.+++.+...+.+++....
T Consensus 101 ~v~~~R~E~-~~~~~~fd~v~a----R---Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 101 EVINGRAEE-PEYRESFDVVTA----R---AVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp EEEES-HHH-TTTTT-EEEEEE----E---SSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred EEEEeeecc-cccCCCccEEEe----e---hhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 344444444 336699999998 2 33477888888999999999999854 334556666678888887654
Q ss_pred e
Q 010599 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 173 v 173 (184)
T PF02527_consen 173 V 173 (184)
T ss_dssp E
T ss_pred e
Confidence 3
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.3e-05 Score=72.21 Aligned_cols=109 Identities=19% Similarity=0.293 Sum_probs=71.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~ 162 (506)
..|...+.+.++ .+|||.|.|+|+++..|+.. .+.+.|+.......+..++. ..++ .+.+...|....-|
T Consensus 30 ~~I~~~l~i~pG--~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 30 SYILMRLDIRPG--SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG--
T ss_pred HHHHHHcCCCCC--CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceecccc
Confidence 346666665544 49999999999999999864 37888887644444443433 3344 36677777754333
Q ss_pred C---CCCeeEEEEcCcccccCCChHHHHHHHHHhc-CCCeEEEEEcCCC
Q 010599 163 A---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVL-RPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~---~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvL-kPGG~li~~~p~~ 207 (506)
. ++.||.|+.-. ++|..++..+.++| ||||++++-.|..
T Consensus 107 ~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 107 DEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 2 36899998742 34667899999999 8999999887754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.9e-05 Score=75.93 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhhCCC------CCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--e
Q 010599 83 QGADKYIDQLASVIPI------KNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--A 150 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~------~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~--~ 150 (506)
++.-.|+..+.+++.. ..+...+|||||||+|.....|+.+ .++++|+++..+..++...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 3446677777777632 1234568999999999887777654 48999998876655554444331343 3
Q ss_pred EEEE-eccccC----CCCCCCeeEEEEcCcccc
Q 010599 151 VIGV-LGTIKM----PYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 151 ~~~~-~d~~~l----p~~~~sfDlV~~~~~l~~ 178 (506)
.+.. .+...+ ..+.+.||+|+|+.-++.
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 3322 222221 124678999999987643
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.3e-05 Score=72.09 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=82.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHA 421 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D~v~~ 421 (506)
..-+...+|||.|.|+|.++++|+..-.....|+..+..+++++.|.+. |+...+...-.++.. .+..||.|+.
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEE
Confidence 3444566899999999999999995433447899999999999988765 332211111122211 2369999998
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC-hhhHHHHHHHHhcCCce
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~ 473 (506)
+-.++-.+|..++.+|||||.+++--+ .+.++++-..++..+|.
T Consensus 170 --------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 170 --------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred --------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 677888999999999999999998543 33444444445555664
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.1e-05 Score=77.62 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=75.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---------cceecc---------ccccCCCCC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IGIYHD---------WCEAFSTYP 413 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---------~~~~~~---------~~~~~~~~p 413 (506)
+.+.++|||||-||-..-.-+.+ ...++++|++.-.++.|..|.- +-.... +.+.+++-+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 34569999999999765555544 3579999999889998888742 000111 112233223
Q ss_pred CceeEEEEcccccccc-CCCCHHHHHHHHhhcccCCcEEEEEeChh--hHHHHHHH
Q 010599 414 RTYDLIHAHGLFSLYK-DKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKI 466 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~-~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--~~~~~~~~ 466 (506)
..||+|-|..+|+..- .-....-+|..+.+-|||||++|-+-+.. ++..|+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 4599999999988533 22344569999999999999999986543 44445444
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.5e-05 Score=76.16 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++......... ...+.+..+|+..++++
T Consensus 15 ~~~~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDT--DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCC--CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 44556666666443 3458999999999999999987 488899987655443322211 23467777888777765
Q ss_pred CCCeeEEEEcCcc
Q 010599 164 SRAFDMAHCSRCL 176 (506)
Q Consensus 164 ~~sfDlV~~~~~l 176 (506)
.||.|+++..+
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999998764
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.2e-05 Score=68.00 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=51.9
Q ss_pred CCCCceEEeecCcccH-HHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--CceeEEEE
Q 010599 350 SGRYRNIMDMNAGFGG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHA 421 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~-~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~D~v~~ 421 (506)
..+..+|||||||+|. +|..|++.| .+|+++|.++..++.+.+++......|+.+. ... ..+|+|++
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p--~~~~y~~a~liys 83 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFNP--NLEIYKNAKLIYS 83 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCCC--CHHHHhcCCEEEE
Confidence 3344679999999996 898999876 5899999999999999999875555443321 122 78999999
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.8e-05 Score=79.43 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=65.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc---cceeccccccCCCCC-CceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHDWCEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~---~~~~~~~~~~~~~~p-~s~D~v~~~~~ 424 (506)
-++|||+|||||-++..-++.| ..+|.++|.| ++.+.|.+ -++ +.++....|++ .+| ..+|+|.+-..
T Consensus 61 dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC--cceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 4579999999999877667666 4789999998 77775443 343 34444445666 467 99999998211
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEE
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
=..+....-+..+|..=+|.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1111112234568888899999999765
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.4e-05 Score=74.08 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=66.1
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CC-C----CCCCeeE
Q 010599 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MP-Y----ASRAFDM 169 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~-lp-~----~~~sfDl 169 (506)
.++|||||+|+|+.+.+++.. .++++|.++.....+. ++..+.|.. +.+..+++.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 458999999999999988863 3789999875443333 333344543 5566666532 22 1 2468999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99743 1222368899999999999999885
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.6e-05 Score=71.43 Aligned_cols=109 Identities=15% Similarity=0.215 Sum_probs=72.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~ 158 (506)
..++..+.+.. ..++||||||++|+-+.++++. .++++|+++.... .+.++..+.|. .+.+..+++.
T Consensus 34 g~lL~~l~~~~-----~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 34 GQLLQMLVRLT-----RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHH-----T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HH
T ss_pred HHHHHHHHHhc-----CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccH
Confidence 44555555554 2358999999999999999864 4899999875443 33334444443 3666666653
Q ss_pred c-CC-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 159 K-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 159 ~-lp-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ++ .+.+.||+|+.-.- ..+-..++..+.+.|+|||.+++..
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~----K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDAD----KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEEST----GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hhHHHHHhccCCCceeEEEEccc----ccchhhHHHHHhhhccCCeEEEEcc
Confidence 2 22 12458999997532 2333678899999999999999863
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.9e-05 Score=77.38 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=58.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..++.+.+.+... .+.+|||||||+|.++..|+++ .++++|+++.++........ ...+.+..+|+..+++++
T Consensus 29 ~i~~~i~~~l~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQ--PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCC--CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHH
Confidence 3445666666433 3458999999999999999987 58999998866644432221 145777888888877654
Q ss_pred CCeeEEEEcCc
Q 010599 165 RAFDMAHCSRC 175 (506)
Q Consensus 165 ~sfDlV~~~~~ 175 (506)
-.+|.|+++..
T Consensus 104 ~~~~~vv~NlP 114 (272)
T PRK00274 104 LQPLKVVANLP 114 (272)
T ss_pred cCcceEEEeCC
Confidence 33588888754
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.7e-05 Score=65.88 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=62.1
Q ss_pred EEeecCcccHHH--HHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceeccccc-cCCCCC-CceeEEEEccc
Q 010599 356 IMDMNAGFGGFA--AAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCE-AFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 356 vLD~gcG~G~~~--~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~-~~~~~p-~s~D~v~~~~~ 424 (506)
++|+|||+|... ..+...+ ..++++|.++.|+..+..+.. .....+... .++..+ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999853 3333322 367779999989988555431 111111111 133333 389999 5444
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
..+.. .+...+.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLL---PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcC---CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 44222 2788999999999999999997654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.8e-05 Score=87.07 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=80.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------------------cceeccccccCCC-CC
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------------------IGIYHDWCEAFST-YP 413 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------------------~~~~~~~~~~~~~-~p 413 (506)
.+|||+|||+|..+..|++.. ....|+++|.|+++++.|.+... ...+...+.++.. .+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 479999999999999998752 12489999999999998854311 0111212222221 22
Q ss_pred ---CceeEEEEccc---------cc-----cc--------cCCCCH-------------HHHHHHHhhcccCCcEEEEEe
Q 010599 414 ---RTYDLIHAHGL---------FS-----LY--------KDKCNI-------------EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 414 ---~s~D~v~~~~~---------~~-----~~--------~~~~~~-------------~~~l~e~~RvLrPgG~~ii~d 455 (506)
..||+|.|+-= ++ +. .+.+.+ ..++.+..++|||||++++.-
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 26999998421 11 00 012222 468899999999999999977
Q ss_pred ChhhHHHHH-HHHhcCCceEE
Q 010599 456 EVDEIIKVK-KIVGGMRWDTK 475 (506)
Q Consensus 456 ~~~~~~~~~-~~~~~~~w~~~ 475 (506)
....-+.+. +++.+.+|+..
T Consensus 279 G~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 279 GGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred CccHHHHHHHHHHHHCCCCee
Confidence 666677788 68888887753
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=71.96 Aligned_cols=106 Identities=21% Similarity=0.322 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcCCCe--EEEEecccc---CCCCCCCeeE
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIK---MPYASRAFDM 169 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~dl~~~~~~~a~~~~~~~--~~~~~d~~~---lp~~~~sfDl 169 (506)
+..-+||||.||.|.+....... .+...|+++..+. ...+..+++|+.. .|...|+.+ +.--+...++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~-~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE-KGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH-HHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 34568999999999876666543 3677889886654 3445666677663 677777643 2222446799
Q ss_pred EEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 170 AHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.+..++.+.++. ...+.-+.+.|.|||++|.+..|.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 99998887776544 467899999999999999997443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00019 Score=66.21 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=60.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+++|+|+|||||.++...+-. .|+++|+++..+ +...+++.+.+..+.+.+.|+.+.. ..||.|+.+.-+=-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 4568999999999877665544 599999988544 4555566665667888888887664 46889998765532
Q ss_pred cCCCh-HHHHHHHHHhc
Q 010599 179 WGAND-GRYMIEVDRVL 194 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvL 194 (506)
+.... ..++..+.+.-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 22222 45666666653
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.9e-05 Score=79.89 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=79.9
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc---c---
Q 010599 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI---G--- 400 (506)
Q Consensus 327 f~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~---~--- 400 (506)
+.++...|..+ .++..+...+..+. .++|+|||+|+...++..-. .-++++++.++..+.++.+.-.. -
T Consensus 88 ~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~ 162 (364)
T KOG1269|consen 88 GNSNEMFWIRH-EGIVALRESCFPGS--KVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKC 162 (364)
T ss_pred hhHHHHHHHhh-cchHHHhhcCcccc--cccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 44444556533 33444444444443 68999999999988887632 35788888886666655443211 1
Q ss_pred -eeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 401 -IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 401 -~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
..-.|+...|+-+++||.+.+..+.. |-.+...++.|+.|||+|||+++.
T Consensus 163 ~~~~~~~~~~~fedn~fd~v~~ld~~~---~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 163 NFVVADFGKMPFEDNTFDGVRFLEVVC---HAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ceehhhhhcCCCCccccCcEEEEeecc---cCCcHHHHHHHHhcccCCCceEEe
Confidence 12223444566669999999966666 445788899999999999999999
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=71.65 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=56.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++........ ....+.+...|+..++++
T Consensus 15 ~~i~~~i~~~~~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVL--EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCC--CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh
Confidence 33445666666433 3458999999999999999987 58889998755543332221 123466777788777765
Q ss_pred CCCee---EEEEcCc
Q 010599 164 SRAFD---MAHCSRC 175 (506)
Q Consensus 164 ~~sfD---lV~~~~~ 175 (506)
+|| +|+++..
T Consensus 91 --~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 --DFPKQLKVVSNLP 103 (253)
T ss_pred --HcCCcceEEEcCC
Confidence 566 7887654
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.1e-05 Score=74.88 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
....+|+|.|.|+.+..+..+ ++.++++....+.+++...+ .| +..+-+|..+- .| +-|+|++.++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~-~P--~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQD-TP--KGDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceeccccccc-CC--CcCeEEEEeecccCC
Confidence 468999999999999999876 57888885443333333332 22 44444454322 33 345999999999998
Q ss_pred CCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010599 181 AND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 181 ~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
++. ..+|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 766 8999999999999999999653
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.3e-05 Score=77.50 Aligned_cols=114 Identities=8% Similarity=0.119 Sum_probs=75.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cceeccccccCCC----CCCceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IGIYHDWCEAFST----YPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~~~~~~~~~~~~----~p~s~D~v~~~~~~ 425 (506)
..+|||++||+|.++..++.++ ..|+++|.++.+++.|.+.. . +..+...+.++.. ....||+|+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence 3579999999999999998764 57999999999999887642 1 1122222333221 11469999984
Q ss_pred ccccCCCCH-HHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeec
Q 010599 426 SLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 426 ~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~ 479 (506)
+++..+ ..++..+ .-++|++.++++.... ..+.++.+ .+|++..+..
T Consensus 308 ---PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 308 ---PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIERVQL 356 (374)
T ss_pred ---CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEE
Confidence 234443 3444555 4589999999987654 44556655 5788765433
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.1e-05 Score=79.67 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=74.6
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+..++|+|||.|....+++.. ++++++.++..+..+........ .....+...+....||+++.||.+.+..+..|
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 347999999999888888764 57777776654433332222211 11233466678888999999999999999888
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 179 WGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++...+++|++|+++|||+++..
T Consensus 191 -~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 191 -APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -CCcHHHHHHHHhcccCCCceEEeH
Confidence 567899999999999999999985
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=68.58 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec--cccccCC-CCCCceeE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH--DWCEAFS-TYPRTYDL 418 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~--~~~~~~~-~~p~s~D~ 418 (506)
+..+.++||.+|.++|.-+..|+..----..++.+|..+++.++|++- |+.. .+. ++-+.++ ....+||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 344678899999999998888875311124799999999999988764 4322 222 3444455 35699999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|+... .+.+-+..|.+.-+.|||||.+++-
T Consensus 136 iFIDa------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 136 VFIDA------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEEeC------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 99821 1224468999999999999999983
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=76.25 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=68.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHH---------------HcC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFAL---------------ERG 147 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~---------------~~~ 147 (506)
...++.+.+.+.....++.++||||||.-.+-..-+.. .++..|+++....+-...... ..|
T Consensus 40 ~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg 119 (256)
T PF01234_consen 40 LFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEG 119 (256)
T ss_dssp HHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccC
Confidence 33444555555433445679999999997553332322 588888876544221111110 011
Q ss_pred C-------------C-eEEEEeccccC-CCCC-----CCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEc
Q 010599 148 V-------------P-AVIGVLGTIKM-PYAS-----RAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 ~-------------~-~~~~~~d~~~l-p~~~-----~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~ 204 (506)
. . -.+...|..+. |+.. ..||+|++.+|++....+. ..+++++.++|||||.|++.+
T Consensus 120 ~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 120 KREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0 0 12333455433 2322 3599999999998877766 478999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=73.87 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=66.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
..++||.||+|.|..+..+++. .++++|+++..+.-+...+... ....+.+...|... +....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999988774 4788888775443333222111 12345666666643 3334578999998
Q ss_pred cCcccccCCC------hHHHHH-HHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPWGAN------DGRYMI-EVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~------~~~~l~-e~~rvLkPGG~li~~~ 204 (506)
-. ..++... ...+++ .+.+.|+|||.+++..
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 53 2222111 146787 8999999999998754
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00024 Score=70.02 Aligned_cols=155 Identities=18% Similarity=0.266 Sum_probs=94.4
Q ss_pred HHHHHHHHhhCCC--CCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc----C----------
Q 010599 86 DKYIDQLASVIPI--KNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER----G---------- 147 (506)
Q Consensus 86 ~~~~~~i~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~----~---------- 147 (506)
...++.|.+.++. ......+||--|||.|+++-.++.+| +.+.++|-.|+-... +.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceec
Confidence 5566777777752 22334689999999999999999986 667777766643221 21110 0
Q ss_pred ---------------C-------------CeEEEEeccccCCCCC---CCeeEEEEcCcccccCCChHHHHHHHHHhcCC
Q 010599 148 ---------------V-------------PAVIGVLGTIKMPYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP 196 (506)
Q Consensus 148 ---------------~-------------~~~~~~~d~~~lp~~~---~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP 196 (506)
+ ......+|...+..++ ++||+|++.+.+ .-..+.-.+|..+.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhcc
Confidence 0 0111222333332233 699999987533 4334446899999999999
Q ss_pred CeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecccc
Q 010599 197 GGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEK 245 (506)
Q Consensus 197 GG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~ 245 (506)
||++|=.+|-..+..... ......++-.++.+..+.+.++|+.+.+.
T Consensus 195 gG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 195 GGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 998887776553322110 00111233446677788888899887643
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=76.00 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=73.5
Q ss_pred CChhhhhhhhhhhHHHHHH-HHHHhhhcCCCC----CceEEeecCcccHHHHHHHhCC---CeEEEEeecCCCcccHHHH
Q 010599 322 VSAESYQEDSNKWKKHVNA-YKKINRLLDSGR----YRNIMDMNAGFGGFAAAIQSSK---LWVMNVVPTLADKNTLGVI 393 (506)
Q Consensus 322 ~~~~~f~~~~~~W~~~v~~-y~~~~~~i~~~~----~~~vLD~gcG~G~~~~~l~~~~---~~~~~v~~~d~~~~~l~~~ 393 (506)
.+-|.|+.|.-+.+..-.. +..+...+...+ ...|||+|||+|-+...-++.+ .....|.+++.+++.....
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l 230 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL 230 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH
Confidence 3678999998665543322 233333444443 3569999999999864433221 1246899999886655432
Q ss_pred ----HhcCccceeccccccCCCC--CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEE
Q 010599 394 ----YERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 394 ----~~rg~~~~~~~~~~~~~~~--p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
.+.+.-..++-...++... |..+|+|.+=-+ -......-+...|.-.+|.|||||.+|
T Consensus 231 ~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 231 QKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2334322233333455443 489999998211 111233356678999999999998665
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.74 E-value=9e-05 Score=70.48 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=86.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccceeccc----cccCCCC-----CC
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDW----CEAFSTY-----PR 414 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~~~~~~----~~~~~~~-----p~ 414 (506)
+...+.++||++||++|.-+..|+..-.....|+.+|.++++.++|.+ -|+-..++.. .+.++.+ ++
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 334457799999999999998888631123589999999999988854 2442211111 1112221 25
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEEee
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~~~ 478 (506)
+||+|+...- +..-...+..+.+.|||||.+++-+..- ..+-.+.+...=++++.+..
T Consensus 121 ~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp 194 (205)
T PF01596_consen 121 QFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP 194 (205)
T ss_dssp SEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC
T ss_pred ceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE
Confidence 8999998332 2344568888889999999999954321 11233335667788888876
Q ss_pred cCCCCCCCeEEEEEEec
Q 010599 479 HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 479 ~~~~~~~~~~~l~~~k~ 495 (506)
..| .+++++|+
T Consensus 195 igd------Gl~l~~K~ 205 (205)
T PF01596_consen 195 IGD------GLTLARKR 205 (205)
T ss_dssp STT------EEEEEEE-
T ss_pred eCC------eeEEEEEC
Confidence 664 46777774
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.9e-05 Score=75.30 Aligned_cols=123 Identities=14% Similarity=0.208 Sum_probs=78.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccH----HHHHHHhC-C--CeEEEEeecCCCcccHHHHHhcC
Q 010599 325 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG----FAAAIQSS-K--LWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 325 ~~f~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~----~~~~l~~~-~--~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
..|-.|...|+...... .. .++.-+|...||.||. +|..|.+. + .+...|+++|+++++|+.|++-
T Consensus 94 T~FFRd~~~f~~L~~~~---~~---~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G- 166 (287)
T PRK10611 94 TAFFREAHHFPILAEHA---RR---RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG- 166 (287)
T ss_pred CCccCCcHHHHHHHHHH---Hh---cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC-
Confidence 34555666666443321 11 1122479999999998 34344442 1 1236799999999999987643
Q ss_pred ccc---------------------------------------eeccccccCCCC--CCceeEEEEccccccccCCCCHHH
Q 010599 398 LIG---------------------------------------IYHDWCEAFSTY--PRTYDLIHAHGLFSLYKDKCNIED 436 (506)
Q Consensus 398 ~~~---------------------------------------~~~~~~~~~~~~--p~s~D~v~~~~~~~~~~~~~~~~~ 436 (506)
..+ ..|++.+ . .+ ++.||+|.|-++|.+.. ......
T Consensus 167 ~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~-~-~~~~~~~fD~I~cRNvliyF~-~~~~~~ 243 (287)
T PRK10611 167 IYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA-K-QWAVPGPFDAIFCRNVMIYFD-KTTQER 243 (287)
T ss_pred CCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC-C-CCccCCCcceeeHhhHHhcCC-HHHHHH
Confidence 100 1111111 0 12 38899999999998654 345678
Q ss_pred HHHHHhhcccCCcEEEEEeCh
Q 010599 437 ILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 437 ~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++..+.+.|+|||+|++-...
T Consensus 244 vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 244 ILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHHhCCCcEEEEeCcc
Confidence 999999999999999996543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=73.80 Aligned_cols=87 Identities=21% Similarity=0.246 Sum_probs=60.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp~ 162 (506)
...++.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++......++... ...+.+...|+...++
T Consensus 22 ~~i~~~Iv~~~~~~--~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIK--PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCC--CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 34556666666443 3458999999999999999876 58999998866654443333221 2346777778766654
Q ss_pred CCCCeeEEEEcCcc
Q 010599 163 ASRAFDMAHCSRCL 176 (506)
Q Consensus 163 ~~~sfDlV~~~~~l 176 (506)
+ .||.|+++..+
T Consensus 100 ~--~~d~VvaNlPY 111 (294)
T PTZ00338 100 P--YFDVCVANVPY 111 (294)
T ss_pred c--ccCEEEecCCc
Confidence 3 68999987644
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.8e-05 Score=75.91 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=70.5
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCCC
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~ 433 (506)
..++|+|||.|-. +.-. ...-+++.|.+...+..++..|-......-+-.+|.-+.+||.+.+.++++|+..++.
T Consensus 47 sv~~d~gCGngky---~~~~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 47 SVGLDVGCGNGKY---LGVN--PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred ceeeecccCCccc---CcCC--CcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 3499999999954 3222 1245788999978888887776422222222334444599999999999998888887
Q ss_pred HHHHHHHHhhcccCCcEEEE
Q 010599 434 IEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii 453 (506)
=..+|.|+-|+|||||...|
T Consensus 122 R~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALV 141 (293)
T ss_pred HHHHHHHHHHHhcCCCceEE
Confidence 78999999999999998666
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00028 Score=66.71 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=74.6
Q ss_pred CCeEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh--C--CcEEEecCccchHHHHHHHHH
Q 010599 69 GNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFAL 144 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~--~--~v~~vdis~~dl~~~~~~~a~ 144 (506)
|-.|.+.-....|..+-..--.++.+.+ .++.+|||+-||.|.|+..+++ + .|.++|++|..+ +.+.+.+.
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~ 146 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLV----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIR 146 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcC----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHH
Confidence 3445555555666666544445677665 2355999999999999999988 3 389999998544 44455555
Q ss_pred HcCCC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEE
Q 010599 145 ERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 145 ~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li 201 (506)
.+++. +.....|...++. .+.||-|++.. +.....+|..+.+++++||.+-
T Consensus 147 lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 147 LNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 55554 4556777776654 78999999864 2223568999999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=69.61 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=68.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceec-------------------------
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYH------------------------- 403 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~------------------------- 403 (506)
.-+|||||..|.+.+.+++. .-...|+++|+.+..++.|.+.-- ...+.
T Consensus 60 ~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred ceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 34999999999999999874 223569999999888888876421 00000
Q ss_pred ------ccc-------c--cCCCCC-CceeEEEEccccc--cccCCC-CHHHHHHHHhhcccCCcEEEEE
Q 010599 404 ------DWC-------E--AFSTYP-RTYDLIHAHGLFS--LYKDKC-NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 404 ------~~~-------~--~~~~~p-~s~D~v~~~~~~~--~~~~~~-~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.|. | +|-... .-||+|.|-++=- |+.+.+ .+-..+..+.|.|.|||+||+.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 0 010112 6799999954433 455554 4788999999999999999994
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=67.88 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=74.4
Q ss_pred CEEEEECCCCChhHHHHhh-CCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC---CCCeeEEEEcCccccc
Q 010599 104 RTALDTGCGVASWGAYLWS-RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA---SRAFDMAHCSRCLIPW 179 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~-~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~---~~sfDlV~~~~~l~~~ 179 (506)
.++|||||=+......-.. -.|+.+|+.+.. -.+.+.|....|.| +++||+|.|+.++..
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf- 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSLVLNF- 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEEEEee-
Confidence 5899999975543322211 147888886531 12345577666653 679999999999855
Q ss_pred CCCh---HHHHHHHHHhcCCCeE-----EEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecc
Q 010599 180 GAND---GRYMIEVDRVLRPGGY-----WVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKS 243 (506)
Q Consensus 180 ~~~~---~~~l~e~~rvLkPGG~-----li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~ 243 (506)
.+++ ...+..+.+.|+|+|. |+++.|...... . -+...+.+..+.+.+++..+.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~N--S--------Ry~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTN--S--------RYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhc--c--------cccCHHHHHHHHHhCCcEEEE
Confidence 5555 5899999999999999 999887653211 0 011234556666677665543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=77.52 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=60.7
Q ss_pred CCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEE
Q 010599 103 VRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlV~~ 172 (506)
...|||||||+|-+....++. .|.+++-++...... .+.....+ ..+.+...+++.+..+. .+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l-~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL-QKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH-HHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH-HHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 458999999999886554432 588888877433221 12223333 35788888888887654 8999999
Q ss_pred cCcccccCCCh--HHHHHHHHHhcCCCeEEE
Q 010599 173 SRCLIPWGAND--GRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 173 ~~~l~~~~~~~--~~~l~e~~rvLkPGG~li 201 (506)
-..- .+..+. ...|....|.|||||.++
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 5432 222222 577899999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00018 Score=66.34 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=82.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCCCCceeEEEEccccccccC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
.++|+|+|||||.|+-..+-.| .-.|+++|..+++++++++.- +.+.+...+.++..+..-||.|..+-=|-....
T Consensus 46 g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 5579999999999866555443 257999999999999887642 345555667888888999999999888876655
Q ss_pred CCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEe
Q 010599 431 KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
+.|.+.++.-+ ++ .=.++=.......+-+++.+..++..+...
T Consensus 124 haDr~Fl~~Al-e~---s~vVYsiH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKAL-EI---SDVVYSIHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHH-Hh---hheEEEeeccccHHHHHHHHHhcCCeEEEE
Confidence 66765544322 11 122233344456778888888888776543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=9e-05 Score=73.81 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=50.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-Cc--eeEEEEc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RT--YDLIHAH 422 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s--~D~v~~~ 422 (506)
+......+|||+|||+|.++..|++.+ ..|+++|.+++|++.+.++.....++..+.++..++ .. +|.|+++
T Consensus 38 l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 38 AGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred cCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 333445689999999999999999875 389999999999999987631122223334444444 22 5888874
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=70.82 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=84.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--c--Cc-----------------------------
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--R--GL----------------------------- 398 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--r--g~----------------------------- 398 (506)
+.+++||+|||+--+ ..|.. .-+.-+++..|.++..++.... + |-
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa-~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSA-CEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTG-GGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhH-HHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 356899999999655 23332 2356788888888776652211 0 10
Q ss_pred -cc-eec-cccc--cCCC---CCCceeEEEEccccccc-cCCCCHHHHHHHHhhcccCCcEEEEEeChh-----------
Q 010599 399 -IG-IYH-DWCE--AFST---YPRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD----------- 458 (506)
Q Consensus 399 -~~-~~~-~~~~--~~~~---~p~s~D~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------- 458 (506)
+. ++. |... .+.. .|..||+|.+...+... .++.....+|..|.+.|||||.||+..-++
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 00 100 0111 1221 34569999997777732 333345579999999999999999953221
Q ss_pred -----hHHHHHHHHhcCCceEEEeecCC--CCCCCeEEEEEEe
Q 010599 459 -----EIIKVKKIVGGMRWDTKMVDHED--GPLVPEKILVAVK 494 (506)
Q Consensus 459 -----~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~l~~~k 494 (506)
..+.|++.++..+.++...+... ...+...+++|||
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 45788889999999987766421 1223577888887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=63.87 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=84.5
Q ss_pred hhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-------Ccccee
Q 010599 330 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-------GLIGIY 402 (506)
Q Consensus 330 ~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-------g~~~~~ 402 (506)
+++-|-..|-+-.+-..... ...+||+|||+|-.+..|... ..-..|+++|.|+..+..|.+. |-+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~---~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSK---HTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcc---cceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 45667666654322222222 226999999999998888763 2246799999999999887764 224444
Q ss_pred cc-----ccccCCCCCCceeEEEEcccc--c-----------cccCCCCH----------HHHHHHHhhcccCCcEEEEE
Q 010599 403 HD-----WCEAFSTYPRTYDLIHAHGLF--S-----------LYKDKCNI----------EDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 403 ~~-----~~~~~~~~p~s~D~v~~~~~~--~-----------~~~~~~~~----------~~~l~e~~RvLrPgG~~ii~ 454 (506)
|. |....+...+.+|++.|+-=. + .+.++..+ ..++.=.-|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 43 222222233999999985311 1 00111111 13556678999999999995
Q ss_pred eC-----hhhH-HHHHHHHhcCCceEEEe
Q 010599 455 DE-----VDEI-IKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 455 d~-----~~~~-~~~~~~~~~~~w~~~~~ 477 (506)
-. ...+ -.|...++.--|.+.+.
T Consensus 285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~ 313 (328)
T KOG2904|consen 285 LVERKEHSYLVRIWMISLKDDSNGKAAVV 313 (328)
T ss_pred ecccccCcHHHHHHHHhchhhccchhhee
Confidence 33 2222 33344455555555543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00062 Score=59.89 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=62.8
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCCh-hHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-CC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVAS-WGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-SR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~-~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~-~~ 165 (506)
+.|.+.++. ..+.+|||||||.|. ++..|++.+ |+++|+++ .+++.+++.+. ...+.|..+-.+. -+
T Consensus 6 ~~l~~~~~~--~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~--~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEK--GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGL--NAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhccc--ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCC--eEEECcCCCCCHHHHh
Confidence 345555533 234689999999995 888898875 77777765 35666666654 3445566544433 45
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+|+|++... +.+....+.++.+.+ |.-+++.
T Consensus 77 ~a~liysirp----p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 77 NAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred cCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 7999999763 233345566666554 4445554
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00029 Score=68.95 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEec
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLG 156 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d 156 (506)
....++..+.+.. ..++|||||+++|+-+.+++.. .++++|.++.....+. +.-.+.|. .+.+..++
T Consensus 66 ~~g~lL~~l~~~~-----~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~~~~I~~~~G~ 139 (247)
T PLN02589 66 DEGQFLNMLLKLI-----NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGVAHKIDFREGP 139 (247)
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEecc
Confidence 3355555555554 2348999999999988888753 4889999774433322 22233343 35555555
Q ss_pred ccc-CCC------CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 157 TIK-MPY------ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 157 ~~~-lp~------~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+.. |+- ..++||+|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 432 221 136899999743 2222367888889999999998874
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.5e-05 Score=68.62 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=81.2
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeE
Q 010599 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAV 151 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~ 151 (506)
|.+.|.+|--..++|...+.---+.......++||+|+|.|..+..++.. .|.+.++| ..++..-+..+.++.
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS-----~tMr~rL~kk~ynVl 158 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-----WTMRDRLKKKNYNVL 158 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-----HHHHHHHhhcCCcee
Confidence 66777777666666643332211222233468999999999999888765 35555544 445454444443322
Q ss_pred EEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCC-CeEEEEE--cCCCCccc
Q 010599 152 IGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP-GGYWVLS--GPPINWKT 211 (506)
Q Consensus 152 ~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP-GG~li~~--~p~~~~~~ 211 (506)
......-.+-+||+|.|...+. -..++..+|+.+..+|+| .|.++++ -|...+..
T Consensus 159 ----~~~ew~~t~~k~dli~clNlLD-Rc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE 216 (288)
T KOG3987|consen 159 ----TEIEWLQTDVKLDLILCLNLLD-RCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVE 216 (288)
T ss_pred ----eehhhhhcCceeehHHHHHHHH-hhcChHHHHHHHHHHhccCCCcEEEEEEecccceee
Confidence 2222222344799999988773 356789999999999999 8888874 35444443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00034 Score=66.24 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=60.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCCCceeEEEEcccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p~s~D~v~~~~~~ 425 (506)
.+|||+|||+|.++..++.++. ..|+++|.++..++.+.+. ++ ..+...+.+ ++.....||+|+++-=|
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 4799999999999986554442 5899999999998877653 22 111112222 22123579999994433
Q ss_pred ccccCCCC-HHHHHHHHh--hcccCCcEEEEEeCh
Q 010599 426 SLYKDKCN-IEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 426 ~~~~~~~~-~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
. .. .+.++.-+. .+|+|+|.+++....
T Consensus 132 ~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 R-----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C-----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2 22 233444443 358999999997654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=69.33 Aligned_cols=75 Identities=5% Similarity=0.005 Sum_probs=51.4
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC-Ccee---EE
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYD---LI 419 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p-~s~D---~v 419 (506)
+..+...+..+|||+|||+|.++..|++.. ..|+++|.+++|++.+.++-- ...+.-.+.++..++ ..|| +|
T Consensus 22 ~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~~~v 98 (253)
T TIGR00755 22 VEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQLKV 98 (253)
T ss_pred HHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCcceE
Confidence 333444456789999999999999999876 359999999999998876521 122222234444444 4677 77
Q ss_pred EEc
Q 010599 420 HAH 422 (506)
Q Consensus 420 ~~~ 422 (506)
.++
T Consensus 99 vsN 101 (253)
T TIGR00755 99 VSN 101 (253)
T ss_pred EEc
Confidence 763
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00016 Score=71.41 Aligned_cols=72 Identities=7% Similarity=0.079 Sum_probs=53.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC-CceeEEEEcccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p-~s~D~v~~~~~~ 425 (506)
.+..+|||+|||+|.++..|.+.+ ..|+++|.++.|++.+.++-- .+.+...+.++..++ ..||.|.++--+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY 101 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCc
Confidence 345789999999999999999874 479999999999999887631 223333445555555 568999985444
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00051 Score=71.94 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=79.1
Q ss_pred EEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010599 105 TALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
++|-+|||.-.+...+-+. .++.+|+|+..+.......+. ......+...+...+.|++++||+|+--..+.++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998888776 478889988777665555553 234467788899999999999999999888877655
Q ss_pred ChH---------HHHHHHHHhcCCCeEEEEEc
Q 010599 182 NDG---------RYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 182 ~~~---------~~l~e~~rvLkPGG~li~~~ 204 (506)
+.. ..+.++.|+|+|||.++..+
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 443 45789999999999987754
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00054 Score=71.44 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=66.1
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+|||++||+|.++..++.. .|+++|+++..+.... +.+..+++. ..+...|+..+....+.||+|++..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 48999999999999998754 3889999885553333 333434444 3356666654321145799999853
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 179 WGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+ ..+..++..+.+.+++||+++++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 234678888788899999999984
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00053 Score=62.64 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=69.4
Q ss_pred CCEEEEECCCCChhHHHHhhC-C----cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR-N----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-~----v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
...+||||||+|..+..|++. + +.++|++|... ++..+-|+.++..+...+.|...- +..++.|+++.+..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 447999999999999999886 2 67889988533 444555666666655555554321 2238999999876654
Q ss_pred ccCCCh--------------------HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 178 PWGAND--------------------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~--------------------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+-.+.+ .+++..+..+|.|.|.|++..-.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 322211 14566677888999999998643
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00095 Score=62.77 Aligned_cols=100 Identities=9% Similarity=-0.033 Sum_probs=62.2
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-C-CC-CCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK-MP-Y-AS-RAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~-lp-~-~~-~sfDlV~~~ 173 (506)
+.+|||++||+|.++..++.++ ++++|.++..+.... +.+...+. .+.+...|... +. + .. ..||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 4589999999999999999873 788888775443332 33333343 24566666632 22 1 12 247888876
Q ss_pred CcccccCCChHHHHHHHH--HhcCCCeEEEEEcC
Q 010599 174 RCLIPWGANDGRYMIEVD--RVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p 205 (506)
..+.. .....++..+. .+|+++|.+++..+
T Consensus 129 PPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 54321 11244454443 47899999988754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=65.12 Aligned_cols=125 Identities=22% Similarity=0.316 Sum_probs=85.0
Q ss_pred CCCceEEeecCcccHHHHHHH-hCCCeEEEEeecCCCcccHH----HHHhcCccceecccc-ccCCC-----CCCceeEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQ-SSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWC-EAFST-----YPRTYDLI 419 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~-~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~-~~~~~-----~p~s~D~v 419 (506)
+.--+||||.||.|....... +.+.-...|.-.|.++..++ .+.+||+-.+...-+ .+|.. ..-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 455589999999999654333 33322457888899988876 778888854432211 12221 22456899
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--hhHHHHHHHHhc----CCceEE
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVGG----MRWDTK 475 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--~~~~~~~~~~~~----~~w~~~ 475 (506)
..+++|....+..-+...|.-+.++|.|||+||.+-.. +.++.|...+.+ ..|.++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE
Confidence 99999998876656778999999999999999997632 344555555544 346644
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00036 Score=64.97 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=58.4
Q ss_pred HHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhCC-----cEEEecCccchHHHHHHHHHHcCCCeEEEEecc------
Q 010599 90 DQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT------ 157 (506)
Q Consensus 90 ~~i~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~~-----v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~------ 157 (506)
.++.+..+ ...+.+.+|||+||++|.|+..+.++. +.++|+.+.... ........|.
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~ 78 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENI 78 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHS
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHH
Confidence 45555555 334456799999999999999999874 788888764110 1111112221
Q ss_pred ccC----CCCCCCeeEEEEcCcccccCC----Ch-------HHHHHHHHHhcCCCeEEEEEc
Q 010599 158 IKM----PYASRAFDMAHCSRCLIPWGA----ND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~l----p~~~~sfDlV~~~~~l~~~~~----~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+ +-..+.||+|+|-.+. .... +. ...+.-+...|+|||.+++..
T Consensus 79 ~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 79 KDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp HHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 111 1123689999996532 1111 11 134555667899999988865
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=69.39 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCe-EEEEeccccCC-CCCCCeeEEE--
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKMP-YASRAFDMAH-- 171 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~-~~~~~d~~~lp-~~~~sfDlV~-- 171 (506)
.++.+|||++||.|.=+.+|++. .+++.|+++.-+. ...+....-|+.. .+...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~-~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVK-VLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 35569999999999887777764 3788999875443 3334444456553 44455655543 2245799999
Q ss_pred --EcCcccccCCCh------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 172 --CSRCLIPWGAND------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 --~~~~l~~~~~~~------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+..- .+..++ ..+|..+.+.|||||+|+.++-..
T Consensus 191 aPCSG~G-~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEG-TVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCc-ccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 55322 111222 367889999999999999987544
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00072 Score=66.76 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=81.3
Q ss_pred hhhhhhhhhHHHHHHHHH-HhhhcCCCCCceEEeecCcccH----HHHHHHhCC----CeEEEEeecCCCcccHHHHHhc
Q 010599 326 SYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGG----FAAAIQSSK----LWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 326 ~f~~~~~~W~~~v~~y~~-~~~~i~~~~~~~vLD~gcG~G~----~~~~l~~~~----~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.|--+.+.|.....+-.- +..... ++.-+|.-+||+||. +|-.|.+.. .+..+|.++|++...|+.|..
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~-~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~- 147 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKK-GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA- 147 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhcc-CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc-
Confidence 355566666644433211 222111 135589999999997 444444432 246899999999999987753
Q ss_pred Cccc-------------------------------------eeccccccCCCCCCceeEEEEccccccccCCCCHHHHHH
Q 010599 397 GLIG-------------------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILL 439 (506)
Q Consensus 397 g~~~-------------------------------------~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~ 439 (506)
|..+ ..|++-.+-+ +++-||+|+|-+|+-... ...-..++.
T Consensus 148 G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd-~~~q~~il~ 225 (268)
T COG1352 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFD-EETQERILR 225 (268)
T ss_pred CCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeC-HHHHHHHHH
Confidence 2211 1111111111 447799999999988544 444568999
Q ss_pred HHhhcccCCcEEEEEeCh
Q 010599 440 EMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 440 e~~RvLrPgG~~ii~d~~ 457 (506)
.++..|+|||+|+|-...
T Consensus 226 ~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 226 RFADSLKPGGLLFLGHSE 243 (268)
T ss_pred HHHHHhCCCCEEEEccCc
Confidence 999999999999996544
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00079 Score=62.96 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=60.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----Cc--EEEecCccchHHHHHHHHHHc---------------CCCeEEEEeccccC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NV--IAMSFAPRDSHEAQVQFALER---------------GVPAVIGVLGTIKM 160 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v--~~vdis~~dl~~~~~~~a~~~---------------~~~~~~~~~d~~~l 160 (506)
++.+.||+|.|+|+++..++.. +. .+++. ....++.+.++ .....+.++|....
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh-----~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEH-----IPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhh-----hHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 3558999999999988777632 33 44444 33444333321 12345667777766
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
--+...||.|+|.... ....+++...|+|||.+++-.
T Consensus 157 ~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 6677899999997432 345678888999999999864
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00023 Score=65.90 Aligned_cols=101 Identities=21% Similarity=0.328 Sum_probs=62.2
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----C------ccceeccccccC--CCCC-Ccee
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G------LIGIYHDWCEAF--STYP-RTYD 417 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g------~~~~~~~~~~~~--~~~p-~s~D 417 (506)
....+||++|||+|-.+..++... ....|+..|.++ .++..... + +.....+|.+.. ...+ +.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 345689999999997766666641 235799999885 66533321 1 122345677644 1123 7899
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|.++.++- .....+.++.=+.++|+|+|.+++...
T Consensus 122 ~IlasDv~Y---~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLY---DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccc---hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999988887 344667888899999999999888543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00017 Score=67.40 Aligned_cols=93 Identities=18% Similarity=0.107 Sum_probs=60.4
Q ss_pred CceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCc--cc-----eeccccc--------cCCCCC-Cc
Q 010599 353 YRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGL--IG-----IYHDWCE--------AFSTYP-RT 415 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~--~~-----~~~~~~~--------~~~~~p-~s 415 (506)
.-+.||+|.|+|.+.+.+.. -+....++++++.-++.++.+.+.-. +. ..-+.|+ .+-.-+ .-
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 45699999999998766652 22233567999998888886655421 10 0000010 111122 89
Q ss_pred eeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
||.||+. .....+.+++--.|+|||.++|-
T Consensus 163 YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 163 YDAIHVG---------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cceEEEc---------cCccccHHHHHHhhccCCeEEEe
Confidence 9999993 34445778888999999999993
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=63.33 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=81.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhc----C---ccceecccccc-----------CC-
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYER----G---LIGIYHDWCEA-----------FS- 410 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~r----g---~~~~~~~~~~~-----------~~- 410 (506)
--+||==|||.|+++-.++..| ..+.+.+.|.-|+= .+... + +.+.+|.++.. +|
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4479999999999999999986 57889999977753 33332 1 11222332221 11
Q ss_pred ---------------------C-CC-----CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE--------Ee
Q 010599 411 ---------------------T-YP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--------RD 455 (506)
Q Consensus 411 ---------------------~-~p-----~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii--------~d 455 (506)
. |+ ++||.|.+...+... .++-+.|..|.++|||||+.|= .+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 1 22 489988876555422 3678899999999999994442 23
Q ss_pred C-------hh-hHHHHHHHHhcCCceEEEe
Q 010599 456 E-------VD-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 456 ~-------~~-~~~~~~~~~~~~~w~~~~~ 477 (506)
. ++ ..++|+.++++++|++...
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 2 22 6799999999999997643
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00069 Score=63.11 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=68.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C-----------cEEEecCccchHHHHHHHHHHcCCC--eEEEE
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N-----------VIAMSFAPRDSHEAQVQFALERGVP--AVIGV 154 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~-----------v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~ 154 (506)
..+..+.... .+..|||--||+|.+....+.. . +.+.|+++..+..+..+ +...+.. +.+.+
T Consensus 18 ~~ll~la~~~--~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 18 AALLNLAGWR--PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE
T ss_pred HHHHHHhCCC--CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEe
Confidence 3455555333 3458999999999988665432 2 45999988777555444 3444443 67777
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010599 155 LGTIKMPYASRAFDMAHCSRCLIPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
.|+..+++.++++|.|+++.-+-.-.... ..+++++.++|++..+++++.
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 88999998888999999976431111111 267889999999955555553
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0034 Score=64.25 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=65.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccc------eeccccc-c---CCCCCCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIG------IYHDWCE-A---FSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~------~~~~~~~-~---~~~~p~s~D~v~ 420 (506)
..++||-||+|.|+.+..+.+.. .+.+|+.+|++++++++|++.- ... .+.-..+ . +...++.||+|.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 46789999999999998887742 2367999999999999998752 110 0000011 1 112347899999
Q ss_pred Ecccccccc-CCC-C--HHHHHH-HHhhcccCCcEEEEE
Q 010599 421 AHGLFSLYK-DKC-N--IEDILL-EMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~-~~~-~--~~~~l~-e~~RvLrPgG~~ii~ 454 (506)
++. +.... ..+ . -...+. .+.|.|+|||.+++.
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 863 22100 001 0 124666 789999999999874
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0027 Score=60.78 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=90.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccc-cccCC--CCCCceeEEEEccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDW-CEAFS--TYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~-~~~~~--~~p~s~D~v~~~~~~~~~ 428 (506)
.+.+||+|+-||||.--|.+++. -.|+++|...+.|.--..... +-.+..- ...+. .+..-.|++.|.-.|-
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI-- 155 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI-- 155 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh--
Confidence 57899999999999999999874 689999998776653333221 0111000 00010 1224678999966665
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEE-------------------EeC---hhhHHHHHHHHhcCCceEEEeecC--CC-C
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIII-------------------RDE---VDEIIKVKKIVGGMRWDTKMVDHE--DG-P 483 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii-------------------~d~---~~~~~~~~~~~~~~~w~~~~~~~~--~~-~ 483 (506)
.+..+|-.+..+|+|+|-++. +|+ ...+.++.+.++..+|.+.-...- .| .
T Consensus 156 ----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~ 231 (245)
T COG1189 156 ----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGK 231 (245)
T ss_pred ----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCC
Confidence 566799999999999998887 233 237788999999999997743322 22 2
Q ss_pred CCCeEEEEEEec
Q 010599 484 LVPEKILVAVKQ 495 (506)
Q Consensus 484 ~~~~~~l~~~k~ 495 (506)
.+.|+++..+|+
T Consensus 232 GNiE~l~~~~k~ 243 (245)
T COG1189 232 GNIEFLLLLKKS 243 (245)
T ss_pred CcEeeeeeeecc
Confidence 235777766664
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=64.90 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=70.0
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceecc----ccccCCC-CCCceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHD----WCEAFST-YPRTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~----~~~~~~~-~p~s~D~v 419 (506)
...-...++||=+|.|-|+.++.+.+.+ .+|+-+|+.+++++.+++--. -+...+ .-..+.. ..++||+|
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVI 143 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLI 143 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEE
Confidence 3445567899999999999999999975 389999999999998877310 000000 0001111 23789999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+++.|+ +.....+.|.|+|||.++..-.
T Consensus 144 IvDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 144 ICLQEPD--------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence 9976544 4567889999999999999543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=66.30 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=81.9
Q ss_pred CCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc--Cccceecc-ccccCC--CCC-CceeEEEEccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER--GLIGIYHD-WCEAFS--TYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r--g~~~~~~~-~~~~~~--~~p-~s~D~v~~~~~ 424 (506)
.-++|||+|||+|...-+..+. + ....++.+|.|+.|++++..= ........ |-..+- ..+ ...|||.++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 4568999999999866555441 1 246799999999999976542 21111111 111111 012 34499999999
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEe
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~ 477 (506)
|+.+.. .....++..+.+.+.+ .|||-++- ..+.++++.+...++.+...
T Consensus 112 L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 112 LNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred hhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECC
Confidence 998776 5667788888887776 88886653 27788888888888877644
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=68.74 Aligned_cols=113 Identities=15% Similarity=0.058 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC-
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM- 160 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~l- 160 (506)
.+.+++.+.+.+... +.+|||+|||+|.++..|++. .++++|+++.++..+. +.+...++ ++.+...|...+
T Consensus 183 ~~~l~~~v~~~~~~~---~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGS---KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcC---CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHH
Confidence 356666666766321 126999999999999998875 5999999987765444 34444555 356666666432
Q ss_pred C-------C---C-----CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 161 P-------Y---A-----SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p-------~---~-----~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ + . ...||+|+....- ..-...+++.+ ++|++.++++..|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR---~G~~~~~l~~l---~~~~~ivYvsC~p~ 314 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPPR---AGLDPDTCKLV---QAYERILYISCNPE 314 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCCC---CCCcHHHHHHH---HcCCcEEEEEcCHH
Confidence 1 1 0 1137998875421 11113444544 34899999997665
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0018 Score=63.44 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=83.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc----cccCCC------CC
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW----CEAFST------YP 413 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~----~~~~~~------~p 413 (506)
+...+.++||++|+++|.-+.+|+..-.....|+.+|..+++..+|++- |+...+... .+.++. +.
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 3444577899999999998887875311135799999998888876442 432211111 111222 23
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC---------h-----hhH--------HHHHHHHhcCC
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE---------V-----DEI--------IKVKKIVGGMR 471 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~---------~-----~~~--------~~~~~~~~~~~ 471 (506)
++||+|+.+.- +..-...+....+.|||||.+++-+. . ... +-.+.+...-+
T Consensus 155 ~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~ 228 (247)
T PLN02589 155 GTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPR 228 (247)
T ss_pred CcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 69999998322 22334677777899999999887321 0 111 11223466778
Q ss_pred ceEEEeecCCCCCCCeEEEEEEec
Q 010599 472 WDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 472 w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++.+....|| +++++|.
T Consensus 229 ~~~~llPigDG------l~l~~k~ 246 (247)
T PLN02589 229 IEICMLPVGDG------ITLCRRI 246 (247)
T ss_pred EEEEEEEeCCc------cEEEEEe
Confidence 88887766544 5666653
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00049 Score=69.80 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=69.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh---------C--CcEEEecCccchHHHHHHHHHHc--CCCeEE
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---------R--NVIAMSFAPRDSHEAQVQFALER--GVPAVI 152 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---------~--~v~~vdis~~dl~~~~~~~a~~~--~~~~~~ 152 (506)
....+.+.+++.. ..+.+|||-+||+|.|...+.+ . .+.|+|+++....-+..+..... .....+
T Consensus 32 ~~i~~l~~~~~~~--~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNP--KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhc--cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 4455667777733 3345899999999999877765 1 47788887655444444433321 111235
Q ss_pred EEeccccCCC-C-CCCeeEEEEcCccccc--CC-----C------------h-HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 153 GVLGTIKMPY-A-SRAFDMAHCSRCLIPW--GA-----N------------D-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 153 ~~~d~~~lp~-~-~~sfDlV~~~~~l~~~--~~-----~------------~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...|....+. . ...||+|+++..+... .. + . ..++..+.+.|++||++.+..|.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 5556543332 2 5789999997544322 00 0 0 26889999999999999888764
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0019 Score=64.40 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=66.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc---------CCCeEEEEeccccC-CCCCCC
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER---------GVPAVIGVLGTIKM-PYASRA 166 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~---------~~~~~~~~~d~~~l-p~~~~s 166 (506)
+..++||-||-|.|..++.+++. .++.+||++.. ++.+++. ...+.+...|..+. .-...+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~V-----i~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAV-----IELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHH-----HHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 34469999999999999999987 58888887643 3444432 13345555555332 222348
Q ss_pred eeEEEEcCcccccCC----ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 167 FDMAHCSRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
||+|++-.. -+..+ ....+++.+.+.|+++|.++..+
T Consensus 150 fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 150 FDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999998432 22111 01689999999999999999873
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0031 Score=63.85 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHhhCCC-----CCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEE
Q 010599 82 PQGADKYIDQLASVIPI-----KNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (506)
Q Consensus 82 ~~~~~~~~~~i~~~l~~-----~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~ 154 (506)
.+++-.+.+.+..+.+. ...++.++|||||++|.|+..|.+++ |+++|..+.+- .......+.+..
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~ 258 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLR 258 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEe
Confidence 34455554444444321 12456799999999999999999996 77887644211 112233466666
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCC--eEEEEEc
Q 010599 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPG--GYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPG--G~li~~~ 204 (506)
.+.....-+.+.+|+|+|-.+ ..|...++-+.++|..| ..+|+..
T Consensus 259 ~d~fr~~p~~~~vDwvVcDmv-----e~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 259 ADGFKFRPPRKNVDWLVCDMV-----EKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred ccCcccCCCCCCCCEEEEecc-----cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 665443222678999999653 44678888889999877 4666653
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=64.69 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=79.1
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc----eeccccc-cCC-CCCCce
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG----IYHDWCE-AFS-TYPRTY 416 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~----~~~~~~~-~~~-~~p~s~ 416 (506)
.+.-.+..+||+.|.|.|.++.+|+..-.....|...|..++..+.|.+. |+.. ...|.|+ .|+ ..++.|
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 44555567899999999999999975322235789999999999888764 4421 2344553 342 234789
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcc-cCCcEEEEEe-ChhhHHHHHHHHhcCCceE
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRIL-RPEGAIIIRD-EVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvL-rPgG~~ii~d-~~~~~~~~~~~~~~~~w~~ 474 (506)
|.|+. +-.++-.++..+.++| ||||.+.+-- ..+.+.++-.-+++.+|.-
T Consensus 115 DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 115 DAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred cEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 99998 5666667999999999 9999998854 4444444444567778863
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=68.14 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC-
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM- 160 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~l- 160 (506)
.+.+++.+.+.+... ..+|||++||+|.++..|++. .++++|+++.++..+. +.+...++ ++.+...|+...
T Consensus 192 ~e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 192 NEKMLEWALDATKGS---KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHH
Confidence 355666666665321 236999999999999988875 5999999987765444 44444455 466777776431
Q ss_pred C-CC--------------CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 161 P-YA--------------SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p-~~--------------~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +. ...||+|+...-. ..-...+++.+. +|++.++++..|.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G~~~~~l~~l~---~~~~ivyvSC~p~ 323 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AGLDDETLKLVQ---AYERILYISCNPE 323 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCC---CCCcHHHHHHHH---ccCCEEEEEeCHH
Confidence 1 10 1258999986432 111244444444 4789999987654
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0019 Score=61.10 Aligned_cols=126 Identities=11% Similarity=0.153 Sum_probs=80.2
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEccccccccCCC
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~D~v~~~~~~~~~~~~~ 432 (506)
-++|||||=....+.. ..+ ..+|++||+.+. -+-+.+.-+ .--.+|.-+ +.||+|.++.|++..+...
T Consensus 53 lrlLEVGals~~N~~s--~~~--~fdvt~IDLns~-~~~I~qqDF------m~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG--WFDVTRIDLNSQ-HPGILQQDF------MERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCccc--ccC--ceeeEEeecCCC-CCCceeecc------ccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 3799999975443222 222 367999999852 111111110 012244444 8999999999999766333
Q ss_pred CHHHHHHHHhhcccCCcE-----EEEEeChh--------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 433 NIEDILLEMDRILRPEGA-----IIIRDEVD--------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~-----~ii~d~~~--------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.=-.-|..+++.|||+|. |+|--+.+ ..+.++.++.+++++....... . +-.+...+|
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~--~--Kl~y~l~r~ 192 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKS--K--KLAYWLFRK 192 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEec--C--eEEEEEEee
Confidence 334689999999999999 77754433 4578899999999996543222 1 444555555
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=61.79 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~ 157 (506)
..+..-+.+|.+...+- .++.+|+|+|+..|+|+..+++. .|+++|+.|.+.. ..+.+.+.|+
T Consensus 27 SRAa~KL~el~~k~~i~-~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~ 94 (205)
T COG0293 27 SRAAYKLLELNEKFKLF-KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDI 94 (205)
T ss_pred chHHHHHHHHHHhcCee-cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeec
Confidence 33433444555554322 34569999999999999998876 2899999876442 2256666665
Q ss_pred ccCC--------CCCCCeeEEEEcCcc---cccCCCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010599 158 IKMP--------YASRAFDMAHCSRCL---IPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~lp--------~~~~sfDlV~~~~~l---~~~~~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
..-+ +....+|+|+|-..- -++..|. ..++.-+..+|+|||.|++..
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 4322 334457999974322 1111121 255667788999999999874
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.002 Score=64.27 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEE--Eecc-
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIG--VLGT- 157 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~--~~d~- 157 (506)
...++++...++. -.+.+|||+|||.|.-.-.+.+. .++++|.|+.++.-+. .+... ....... ....
T Consensus 19 ~~vl~El~~r~p~--f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~~~-~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 19 YRVLSELRKRLPD--FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLLRA-GPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHHhCcC--CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHHhc-ccccccchhhhhhh
Confidence 3444566665532 24458999999999655444432 4778888776553222 22221 1111100 0111
Q ss_pred -ccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 158 -IKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 158 -~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
...++. ..|+|+++++|..+.+.. ..+++.+.+.+.+ +|++..|..
T Consensus 95 ~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 95 RDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred cccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 122332 339999999998876522 4666666666655 888887765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0027 Score=60.34 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=77.8
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCc----ccHHHHHhcC-ccceeccccccCCC-CC---CceeEEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK----NTLGVIYERG-LIGIYHDWCEAFST-YP---RTYDLIH 420 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~----~~l~~~~~rg-~~~~~~~~~~~~~~-~p---~s~D~v~ 420 (506)
-.+..+||-+|+.+|+...++.+--....-|.+++.|+ +.+.+|.+|- +++++.| ...|. |. ..+|+|+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D--Ar~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED--ARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES---TTSGGGGTTTS--EEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc--CCChHHhhcccccccEEE
Confidence 34456899999999999999987422224689999998 5677899984 5666644 22222 22 7899999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEE------eC----hhhHHHHHHHHhcCCceEE-EeecC
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR------DE----VDEIIKVKKIVGGMRWDTK-MVDHE 480 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~------d~----~~~~~~~~~~~~~~~w~~~-~~~~~ 480 (506)
++ ..++...+-++..+..-||+||.++|. |. ..+...-.+.+++-+++.. .++.+
T Consensus 149 ~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le 214 (229)
T PF01269_consen 149 QD-----VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE 214 (229)
T ss_dssp EE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T
T ss_pred ec-----CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC
Confidence 82 123445566888888999999999984 22 2233333344566677754 44444
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00058 Score=68.68 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=51.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~v~~~~~~ 425 (506)
....+|||+|||+|.++..|.+.+ ..|+++|.+++|++.+.++ ++...+.-.+.++...+ ..||.|.++.=+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaNlPY 111 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANVPY 111 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEecCCc
Confidence 345689999999999999998864 4699999999999988775 22222223345554444 678998884333
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0036 Score=66.18 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP 161 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp 161 (506)
.+.+++...+.+...+ +.+|||+=||.|.|+..|+++ .|+++++++..+..+ .+.|+.+++. +.+...+++...
T Consensus 278 ~ekl~~~a~~~~~~~~--~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A-~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 278 AEKLYETALEWLELAG--GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAA-QENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHhhcC--CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHH-HHHHHHcCCCcEEEEeCCHHHHh
Confidence 3666677777775433 348999999999999999976 699999999777544 4555555555 666667766554
Q ss_pred C---CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 162 Y---ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~---~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. ....||.|+...-- ..-...+++.+. -++|-..+++|.+|.
T Consensus 355 ~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~-~~~p~~IvYVSCNP~ 399 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPR---AGADREVLKQLA-KLKPKRIVYVSCNPA 399 (432)
T ss_pred hhccccCCCCEEEECCCC---CCCCHHHHHHHH-hcCCCcEEEEeCCHH
Confidence 2 24578999975422 111134555554 468888999998776
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0034 Score=63.68 Aligned_cols=116 Identities=9% Similarity=0.061 Sum_probs=71.3
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcCCCeEE--EEe
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVI--GVL 155 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~dl~~~~~~~a~~~~~~~~~--~~~ 155 (506)
+.....|++.++ ++..++|+|||.|.=+..|++. .+.++|||...+..+..+........+.+ ..+
T Consensus 64 ~~~~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~g 139 (319)
T TIGR03439 64 KKHSSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEe
Confidence 344456666662 3448999999999766555432 37889998877766665555233222333 344
Q ss_pred cccc----CCC--CCCCeeEEEEcC-cccccCCCh-HHHHHHHHH-hcCCCeEEEEEcC
Q 010599 156 GTIK----MPY--ASRAFDMAHCSR-CLIPWGAND-GRYMIEVDR-VLRPGGYWVLSGP 205 (506)
Q Consensus 156 d~~~----lp~--~~~sfDlV~~~~-~l~~~~~~~-~~~l~e~~r-vLkPGG~li~~~p 205 (506)
+..+ ++- ......+|+... ++-.+.++. ..+|+++.+ .|+|||.|++...
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred cHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 4322 321 123467777643 333443322 588999999 9999999999753
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.019 Score=52.79 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=78.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cC--ccceeccccccCCCCCCceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RG--LIGIYHDWCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg--~~~~~~~~~~~~~~~p~s~D~v~~~~~~~ 426 (506)
...+|++|||+|.....|++.-....-.+++|+++..++.-.+ .+ +..+..|....+ -+++.|++.-+--+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEECCCcC
Confidence 5569999999999999998753334557888998887775333 22 122222222222 238899877654443
Q ss_pred cccCCCC------------------HHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010599 427 LYKDKCN------------------IEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 427 ~~~~~~~------------------~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
-....+. +..+|..+.-+|-|.|.+++--... ...+|-+++++-+|.+.+..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 2222221 3357777888889999999843221 23455568889999877543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0033 Score=65.30 Aligned_cols=124 Identities=18% Similarity=0.222 Sum_probs=80.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc-cc-cCCC---CC---CceeEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW-CE-AFST---YP---RTYDLIH 420 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~-~~-~~~~---~p---~s~D~v~ 420 (506)
.++|||+=|=||+|+.+.+..|. -.|+.+|.|...|+.|.+. |+...-|.| ++ .|.. .. .+||+|.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 46799999999999998888762 4899999999999988876 332222222 11 2222 22 4999999
Q ss_pred Ecc-ccccccCC-----CCHHHHHHHHhhcccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEee
Q 010599 421 AHG-LFSLYKDK-----CNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~-~~~~~~~~-----~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~~ 478 (506)
.+- .|...+.. -+...++....++|+|||.+++..... ..+.|..-+..++-...++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence 821 22211100 022368999999999999999965332 44555555555655544543
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0019 Score=65.52 Aligned_cols=127 Identities=16% Similarity=0.170 Sum_probs=70.1
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----ccceeccc-cc---c-CCC---CCC
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----LIGIYHDW-CE---A-FST---YPR 414 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----~~~~~~~~-~~---~-~~~---~p~ 414 (506)
+..+...+|||||||+|..+..|..+- ...+++++|.++.+++.|.+-. +...+.-. +. . +.. ...
T Consensus 110 ~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 110 IPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCC
Confidence 344456789999999998888876542 1247999999999999776531 21111100 01 1 111 136
Q ss_pred ceeEEEEccccccccCCC--CHHHHHHH----------------HhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010599 415 TYDLIHAHGLFSLYKDKC--NIEDILLE----------------MDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~--~~~~~l~e----------------~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
.||+|.|+-=|....... .-..-... ....+-+||.+-+-..+ +.+-..++++.+|=+.+
T Consensus 189 ~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m--i~eS~~~~~~~gwftsm 266 (321)
T PRK11727 189 RFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM--IEESKAFAKQVLWFTSL 266 (321)
T ss_pred ceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh--hHHHHHHHhhCcEEEEE
Confidence 899999965554211110 00011111 22445688887765544 33335556666665444
Q ss_pred e
Q 010599 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 267 v 267 (321)
T PRK11727 267 V 267 (321)
T ss_pred e
Confidence 3
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00021 Score=66.44 Aligned_cols=88 Identities=20% Similarity=0.392 Sum_probs=67.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccCC
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~ 431 (506)
.++||+|+|.|.....|+.. .-.|.+.++|..|...-..++. ++. ..|.+ -+=.||+|.|-+++ +|
T Consensus 114 ~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~-~ew~~----t~~k~dli~clNlL----DR 181 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTE-IEWLQ----TDVKLDLILCLNLL----DR 181 (288)
T ss_pred eeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeee-hhhhh----cCceeehHHHHHHH----Hh
Confidence 57999999999998888652 2358899999999998888864 222 22332 12359999996555 58
Q ss_pred C-CHHHHHHHHhhcccC-CcEEEE
Q 010599 432 C-NIEDILLEMDRILRP-EGAIII 453 (506)
Q Consensus 432 ~-~~~~~l~e~~RvLrP-gG~~ii 453 (506)
| ++-.+|..|+-||+| .|.+|+
T Consensus 182 c~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEE
Confidence 8 677899999999999 999998
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=8.6e-05 Score=65.88 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=47.8
Q ss_pred ccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCCCcc
Q 010599 156 GTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINWK 210 (506)
Q Consensus 156 d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~~ 210 (506)
.....+|.++|.|+|++.++++|+.-+. ..++++++|+|||||+|-+++|...+.
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 3456789999999999999999987655 689999999999999999999877653
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0021 Score=66.66 Aligned_cols=110 Identities=11% Similarity=0.143 Sum_probs=69.9
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C--------------
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y-------------- 412 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~-------------- 412 (506)
.|||++||+|.|+.+|+... ..|+++|.++.+++.|.+. |+ ..+...+.++.. +
T Consensus 209 ~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred eEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 59999999999999888753 4799999999999988765 22 112122222111 1
Q ss_pred -CCceeEEEEccccccccCCCCH-HHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeec
Q 010599 413 -PRTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 413 -p~s~D~v~~~~~~~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~ 479 (506)
...||+|..+ ++|..+ +.++..+ ++|++.++|+.... ....++.+.+ +|++..+..
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v~~ 343 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVERFAL 343 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEEEE
Confidence 1248999981 123332 3344444 45899999986654 3455666653 788765433
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0026 Score=59.23 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=72.6
Q ss_pred hcCCCCCceEEeecCcccHHH--HHHHhCCCe------EEEEeecCCCcccHHHHHhc----Cccceeccc---cccCCC
Q 010599 347 LLDSGRYRNIMDMNAGFGGFA--AAIQSSKLW------VMNVVPTLADKNTLGVIYER----GLIGIYHDW---CEAFST 411 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~--~~l~~~~~~------~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~---~~~~~~ 411 (506)
...+.+...|||-=||+|++. +++...++. ...+.+.|.+++++..|.+. |+...++.. ...++.
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 344455568999999999985 333333322 22478999999999877654 332222221 233443
Q ss_pred CCCceeEEEEccccccccCCCCH--------HHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEe
Q 010599 412 YPRTYDLIHAHGLFSLYKDKCNI--------EDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 412 ~p~s~D~v~~~~~~~~~~~~~~~--------~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
.++++|+|.++-=+- .+... ..++.|+.|+|+|...+++.... .+.+.+....|+....
T Consensus 103 ~~~~~d~IvtnPPyG---~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~----~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYG---RRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR----ELEKALGLKGWRKRKL 169 (179)
T ss_dssp TTSBSCEEEEE--ST---TSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC----CHHHHHTSTTSEEEEE
T ss_pred ccCCCCEEEECcchh---hhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHhcchhhceEEE
Confidence 448999999954333 22221 25789999999995566666554 3455666668875543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0014 Score=67.76 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=69.5
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCC----------C---C-----
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFST----------Y---P----- 413 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~----------~---p----- 413 (506)
.|||++||+|.|+..|++.. ..|+++|.+++|++.|.+..- +..+...+.++.. + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 49999999999999888753 379999999999998887521 1111111222111 1 0
Q ss_pred -CceeEEEEccccccccCCCCH-HHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEee
Q 010599 414 -RTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 414 -~s~D~v~~~~~~~~~~~~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~ 478 (506)
..||+|+.+ ++|..+ +.++.-+ ++|++.++|+-... ....+..+.++ |++..+.
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~~l---~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~ 333 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCKLV---QAYERILYISCNPETLKANLEQLSET--HRVERFA 333 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHHHH---HcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEE
Confidence 127888871 123333 3444444 45999999976554 55667766644 8866443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.012 Score=56.34 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEE-EEeccc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVI-GVLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~~~~-~~~d~~ 158 (506)
+|+..+...+...- + ...++.+||||+.||.|+..+++++ |.++|+.-.-++ ...+....+.. ...++.
T Consensus 62 RG~~KL~~ale~F~-l-~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~-----~kLR~d~rV~~~E~tN~r 134 (245)
T COG1189 62 RGGLKLEKALEEFE-L-DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH-----WKLRNDPRVIVLERTNVR 134 (245)
T ss_pred cHHHHHHHHHHhcC-c-CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC-----HhHhcCCcEEEEecCChh
Confidence 56666655554433 2 3456799999999999999999984 888888654332 22333333332 222333
Q ss_pred cCC---CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccc----hhcccCChHHhHHHHHHHH
Q 010599 159 KMP---YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTN----YKAWQRPKEELQEEQRKIE 231 (506)
Q Consensus 159 ~lp---~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~----~~~~~~~~~~~~~~~~~l~ 231 (506)
.+. +. +..|+|+|--+++. ...+|..+..+|+|+|.++.-.-|.--..+ ...-.+...........+.
T Consensus 135 ~l~~~~~~-~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 135 YLTPEDFT-EKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred hCCHHHcc-cCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 332 22 36889999776644 367899999999999999886644311111 1112334444445556677
Q ss_pred HHHHhcceeecc
Q 010599 232 EIANLLCWEKKS 243 (506)
Q Consensus 232 ~l~~~~~w~~~~ 243 (506)
+++....|....
T Consensus 210 ~~~~~~g~~~~g 221 (245)
T COG1189 210 NFAKELGFQVKG 221 (245)
T ss_pred HHHhhcCcEEee
Confidence 777777776653
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0051 Score=60.65 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=62.9
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHH----HcCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010599 100 NGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~----~~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
.+.+++||=||.|.|..++.++++ .++.+||++..+.....-+.. -..+++.+.. ... .-..++||+|++-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEc
Confidence 345679999999999999999987 588888876444222210110 0122333332 111 1123689999985
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. ....+.+.+.|.|+|||.++.-.
T Consensus 147 s~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC------CChHHHHHHHHhcCCCcEEEECC
Confidence 32 23678899999999999999854
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0037 Score=68.21 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.0
Q ss_pred CCEEEEECCCCChhHHHHhh
Q 010599 103 VRTALDTGCGVASWGAYLWS 122 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~ 122 (506)
..+|||.|||+|.+...++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~ 51 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLK 51 (524)
T ss_pred ceEEEeCCCCccHHHHHHHH
Confidence 45899999999999887764
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=56.21 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=88.4
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHH--HHhCCCeEEEEeecCCCccc---HHHHHhc-Cc--
Q 010599 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAA--IQSSKLWVMNVVPTLADKNT---LGVIYER-GL-- 398 (506)
Q Consensus 327 f~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~--l~~~~~~~~~v~~~d~~~~~---l~~~~~r-g~-- 398 (506)
..+..+.|.+++-.-..+...+... ..+++|||.|.|-=+.- +.... .+|+-+|....- |+.+... |+
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~---~~vtLles~~Kk~~FL~~~~~eL~L~n 118 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPD---LKVTLLESLGKKIAFLREVKKELGLEN 118 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccC---CcEEEEccCchHHHHHHHHHHHhCCCC
Confidence 3445688988887766665544332 46899999999963333 33333 458888866443 3333333 54
Q ss_pred cceeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE---EeChhhHHHHHHHHhcCCceEE
Q 010599 399 IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII---RDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 399 ~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii---~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
+.+++...|++..-+.-||+|.| . ..+++..++.=....||+||.++. .-..++..+.+......++.+.
T Consensus 119 v~i~~~RaE~~~~~~~~~D~vts----R---Ava~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~ 191 (215)
T COG0357 119 VEIVHGRAEEFGQEKKQYDVVTS----R---AVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVE 191 (215)
T ss_pred eEEehhhHhhcccccccCcEEEe----e---hccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEE
Confidence 23444444444321111999998 2 233566666667789999998754 3344567778888888888877
Q ss_pred EeecC
Q 010599 476 MVDHE 480 (506)
Q Consensus 476 ~~~~~ 480 (506)
.+..-
T Consensus 192 ~~~~~ 196 (215)
T COG0357 192 KVFSL 196 (215)
T ss_pred EEEEe
Confidence 55443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0032 Score=67.26 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=71.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~D~v~ 420 (506)
......+||||+||+|+=+.+|++.-.-...|++.|.++..+....++ |+ ..+.-.+.+ +. .++..||.|.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEE
Confidence 334556899999999997777765311113799999998888766544 43 222111222 21 3457899999
Q ss_pred ----Ecc--cccccc----CC--CCH-------HHHHHHHhhcccCCcEEEEEe-C---hhhHHHHHHHHhc
Q 010599 421 ----AHG--LFSLYK----DK--CNI-------EDILLEMDRILRPEGAIIIRD-E---VDEIIKVKKIVGG 469 (506)
Q Consensus 421 ----~~~--~~~~~~----~~--~~~-------~~~l~e~~RvLrPgG~~ii~d-~---~~~~~~~~~~~~~ 469 (506)
|++ +|..-. .+ .++ ..+|....+.|||||+|+-+. + .+-.+.|+.+++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 432 222100 00 011 258899999999999998853 2 2333444455544
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0067 Score=56.70 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=60.4
Q ss_pred EEEEECCCCChhHHHHhh----CCcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 105 TALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~----~~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+++|||+|.|.-+..|+= ..++.+|-...-. .-....+.+-+++ +......++. +....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 799999999965555542 2577788755322 1112233444665 5556556666 5557799999996532
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEE
Q 010599 180 GANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
....++.-+...|++||.+++.
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 2467888899999999998876
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0029 Score=59.50 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=63.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCC--C-CceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STY--P-RTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~--p-~s~D~v~~ 421 (506)
..+|||++||+|.++..+..++. ..|+.+|.++..++.+.+- ++...+..++.++ ..+ . ..||+|..
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 35799999999999999999874 3799999998888877553 2211112222222 112 1 24899988
Q ss_pred ccccccccCCCCHHHHHHHH--hhcccCCcEEEEEeCh
Q 010599 422 HGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~ 457 (506)
.-=|.. ...+.+|.-+ ..+|+++|.+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 555541 1233333333 4589999999986543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0027 Score=62.17 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.|.+.+.... +.+|||||+|.|.++..|+++ .|+++++++..+..-....+ ...+..+...|+...+++
T Consensus 16 ~~v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 344677777775444 459999999999999999998 48999997743322111111 234567777888887776
Q ss_pred CC-CeeEEEEcCc
Q 010599 164 SR-AFDMAHCSRC 175 (506)
Q Consensus 164 ~~-sfDlV~~~~~ 175 (506)
+. .++.|+++.-
T Consensus 92 ~l~~~~~vVaNlP 104 (259)
T COG0030 92 SLAQPYKVVANLP 104 (259)
T ss_pred hhcCCCEEEEcCC
Confidence 54 6889999764
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.013 Score=59.55 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=64.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEcccccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~D~v~~~~~~~~~~ 429 (506)
+..++||+||++|||+-.|.+++ +.|+++|.. .|-+...+-+.+. |.-...|-.. ++.+|+|.|+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g-~l~~~L~~~~~V~--h~~~d~fr~~p~~~~vDwvVcDm------ 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNG-PMAQSLMDTGQVE--HLRADGFKFRPPRKNVDWLVCDM------ 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC---CEEEEEech-hcCHhhhCCCCEE--EEeccCcccCCCCCCCCEEEEec------
Confidence 45689999999999999999987 589999977 5666555554322 2222334334 47899999922
Q ss_pred CCCCHHHHHHHHhhcccCC--cEEEEE
Q 010599 430 DKCNIEDILLEMDRILRPE--GAIIIR 454 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPg--G~~ii~ 454 (506)
.+.+..++.=|.+.|..| ..+|++
T Consensus 279 -ve~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 279 -VEKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -ccCHHHHHHHHHHHHhcCcccEEEEE
Confidence 246677888888888777 466664
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0017 Score=60.67 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=67.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc-c
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-K 159 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~-~ 159 (506)
+..-+.+.+.|....-.+.++||+-||+|.++...+.+| ++.+|.++.-+. ...+....-+.. ......|.. .
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-IIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-HHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-HHHHHHHHhCCCcceeeeccCHHHH
Confidence 334444555553211245699999999999999999885 788888764332 222333333332 455555642 2
Q ss_pred CC---CCCCCeeEEEEcCcccccCCCh--HHHHHHHH--HhcCCCeEEEEEcC
Q 010599 160 MP---YASRAFDMAHCSRCLIPWGAND--GRYMIEVD--RVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp---~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~--rvLkPGG~li~~~p 205 (506)
++ .....||+|+.-..+ .... ..++..+. .+|+++|.+++..+
T Consensus 105 l~~~~~~~~~fDiIflDPPY---~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPY---AKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHCTS-EEEEEE--ST---TSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHhhcccCCCceEEEECCCc---ccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 21 246789999997643 3332 55677766 78999999999764
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.002 Score=63.14 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=66.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEeccccC-CCCCC-CeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM-PYASR-AFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~l-p~~~~-sfDlV~ 171 (506)
.+++||=||-|.|..+..+.+. .++++|+++..+.-+..-+... ...+..+...|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4569999999999999999876 4888999875443333222222 134567777776432 22233 899999
Q ss_pred EcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010599 172 CSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.-..- +.... ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 74322 21111 1589999999999999999875
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0013 Score=65.95 Aligned_cols=80 Identities=19% Similarity=0.042 Sum_probs=53.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCC----CC---ceeE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTY----PR---TYDL 418 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~----p~---s~D~ 418 (506)
.+...+..+++|++||+|+.+.++++.......|+++|.++.|+..|.++-- ...+.....+|..+ +. +||.
T Consensus 14 ~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDg 93 (296)
T PRK00050 14 ALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDG 93 (296)
T ss_pred hhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCE
Confidence 3333444589999999999999998863223679999999999999987621 01122222333332 22 7998
Q ss_pred EEEccccc
Q 010599 419 IHAHGLFS 426 (506)
Q Consensus 419 v~~~~~~~ 426 (506)
|.++...+
T Consensus 94 Il~DLGvS 101 (296)
T PRK00050 94 ILLDLGVS 101 (296)
T ss_pred EEECCCcc
Confidence 88865544
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0061 Score=60.76 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCe--EEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.++.|||+|||+|.++...++. +|.+++-|. |. +-+.++...+.+.. ....+.+++..+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA-qyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA-QYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH-HHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4568999999999877776665 577777654 22 22223333333333 3333445666555 479999985433
Q ss_pred cccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 177 IPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.-+..+. -...-.+.+.|||.|.++=+.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 2222211 222334569999999987653
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0039 Score=60.65 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=57.3
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~ 164 (506)
.++.|.+..++.+. ..|||||.|||.++..|.+. .|+++++++.++.+-........ .....+..+|....++|
T Consensus 46 v~~~I~~ka~~k~t--D~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPT--DVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCCC--CEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 44566666655544 49999999999999999987 59999999887755443332111 11245555666555544
Q ss_pred CCeeEEEEcCcc
Q 010599 165 RAFDMAHCSRCL 176 (506)
Q Consensus 165 ~sfDlV~~~~~l 176 (506)
.||.++++.-+
T Consensus 123 -~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 -RFDGCVSNLPY 133 (315)
T ss_pred -ccceeeccCCc
Confidence 59999997543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.003 Score=55.68 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=59.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh---CCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~ 162 (506)
...+..|-+.... -.+..++|+|||.|.+.....- ..+.++||.+..+ +-..+.+.+-.+.+.+.++++..+-+
T Consensus 34 asM~~~Ih~Tygd--iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~ 110 (185)
T KOG3420|consen 34 ASMLYTIHNTYGD--IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLEL 110 (185)
T ss_pred HHHHHHHHhhhcc--ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhc
Confidence 3344445444432 2455899999999977644332 2588999987433 33445555556677788888888877
Q ss_pred CCCCeeEEEEcCcc
Q 010599 163 ASRAFDMAHCSRCL 176 (506)
Q Consensus 163 ~~~sfDlV~~~~~l 176 (506)
..+.||.++.+.-+
T Consensus 111 ~~g~fDtaviNppF 124 (185)
T KOG3420|consen 111 KGGIFDTAVINPPF 124 (185)
T ss_pred cCCeEeeEEecCCC
Confidence 78999999987654
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.008 Score=62.52 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=70.8
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccC----CCCCCCeeEEEE
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM----PYASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~l----p~~~~sfDlV~~ 172 (506)
+++|||+=|=||.|+.+.+.. .++.||+|..-+..+..++.. +++ +..+.+.|+... .-...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 669999999999999998876 478888877655544444333 343 356777776432 223458999997
Q ss_pred cCcccc------c--CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 173 SRCLIP------W--GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~------~--~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
-..-.- | ..+-..++..+.++|+|||.+++++...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 321100 0 1111478899999999999999987544
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.004 Score=56.31 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=77.8
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccCCCCC-Cce
Q 010599 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFSTYP-RTY 416 (506)
Q Consensus 343 ~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~~~~p-~s~ 416 (506)
++...|.+.+.-.||.+|.|||.|..++.++++.--+++.++.+++....-.++-. .|...+.-..+...+ .-|
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCee
Confidence 44556788888899999999999999999999888899999999988887776632 122211111222334 789
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.|.|.-=|-...-+ .-..+|.+..--|++||.++--
T Consensus 119 D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 119 DSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 999984333211111 1136888899999999988863
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0032 Score=62.68 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=63.0
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--C--c---cceeccccccCCCCCC
Q 010599 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--G--L---IGIYHDWCEAFSTYPR 414 (506)
Q Consensus 342 ~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r--g--~---~~~~~~~~~~~~~~p~ 414 (506)
..++..-..-.-+.|||+|||.|.+...-+..| ...|.++++| +|.+.|..- + + |.++-.--|++ .+|.
T Consensus 167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-eLPE 242 (517)
T KOG1500|consen 167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-ELPE 242 (517)
T ss_pred HHHHhcccccCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-cCch
Confidence 334443333346789999999998765555544 2579999998 999877543 1 1 11111112343 2679
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
..|+|.+--.=..+-+ ..+...-.-..|.|||.|...=
T Consensus 243 k~DviISEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 243 KVDVIISEPMGYMLVN-ERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hccEEEeccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence 9999998221111111 2232333345599999997654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0046 Score=57.36 Aligned_cols=99 Identities=22% Similarity=0.213 Sum_probs=63.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+++|||+|+|+|-.+..-+.. .+...|+.| ....+..-++..+++.+.+...|... .+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P-~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDP-WLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCCh-HHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 4679999999999766655554 477888876 33333334455566666665444433 5678999999987632
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 179 WGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+...+++. ..+.|+..|.-++.+.|
T Consensus 155 -~~~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 -HTEADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred -chHHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 222256666 66666666666665543
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.018 Score=54.97 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
.-.+++.+.+.+ .++++||||.=||+-+..++.. .++++|+++...... .++.+..+.. +.+.+..+
T Consensus 61 ~g~fl~~li~~~-----~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLIRLL-----NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred HHHHHHHHHHHh-----CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecch
Confidence 345555555555 2348999999888765555543 489999977544333 3333333433 44444443
Q ss_pred c-cC-----CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 158 I-KM-----PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 158 ~-~l-----p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
. .| ..+.++||+++. -++.+.-...+.++.++||+||.+++.
T Consensus 135 ~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 1 11 135789999986 355544468899999999999999985
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0087 Score=60.99 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=81.6
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEE
Q 010599 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGV 154 (506)
Q Consensus 80 ~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~ 154 (506)
+|.++-..--..++++.. .|.+|||+=+|.|.|+..++..+ |.++|++|..+ +...+.++-+++. +....
T Consensus 170 ~Fsprl~~ER~Rva~~v~----~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~ 244 (341)
T COG2520 170 YFSPRLSTERARVAELVK----EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPIL 244 (341)
T ss_pred EECCCchHHHHHHHhhhc----CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEe
Confidence 444444333345666662 35599999999999999998873 88999998544 3444444444444 44677
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|....+...+.||-|++... .....++..+.+.+++||.+.+-.
T Consensus 245 gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 245 GDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEe
Confidence 788777665588999998652 234678899999999999998864
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0039 Score=59.27 Aligned_cols=118 Identities=10% Similarity=0.139 Sum_probs=60.2
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH---H----HcCC-
Q 010599 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA---L----ERGV- 148 (506)
Q Consensus 81 f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a---~----~~~~- 148 (506)
++.-....+..+.+.+.+.+ ....+|||||.|......+-. ...|+++.+. .+..+.... . ..+.
T Consensus 23 YGEi~~~~~~~il~~~~l~~--~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g~~ 99 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTP--DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYGKR 99 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--T--T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCTB-
T ss_pred eeecCHHHHHHHHHHhCCCC--CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhhcc
Confidence 44444555566667775543 459999999999765555432 3788888764 332222111 1 1122
Q ss_pred --CeEEEEeccccCCCC---CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 149 --PAVIGVLGTIKMPYA---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 149 --~~~~~~~d~~~lp~~---~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++.+..+|..+.++. -..-|+|+++... +.++....|.++..-||+|-+++-.
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 234444444322211 1346999998754 3444466778888889999887643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=58.98 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=70.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccc--cc-----------CCCCC
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC--EA-----------FSTYP 413 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~--~~-----------~~~~p 413 (506)
.+..+..++||=+|-|.|+.++.+.+..- +-.++.+|+.++.++.+++.- +..+..+ .+ +...+
T Consensus 71 ~~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l--~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 71 LLAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYL--PEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhc--cCcccccCCCceEEEeccHHHHHHhCC
Confidence 34445558999999999999999988652 567888899999999998762 1111101 11 11244
Q ss_pred CceeEEEEccccccccCCCC--HHHHHHHHhhcccCCcEEEEE
Q 010599 414 RTYDLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+||+|.++..=. ..+-.. -...+....|.|+|+|.++..
T Consensus 148 ~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 6899999832211 111011 157899999999999999997
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=57.64 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=80.1
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhC------CCeEEEEeecCCCcccHHHHHhc----Cccce-e-ccccccCCCC---
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSS------KLWVMNVVPTLADKNTLGVIYER----GLIGI-Y-HDWCEAFSTY--- 412 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~------~~~~~~v~~~d~~~~~l~~~~~r----g~~~~-~-~~~~~~~~~~--- 412 (506)
+......+|+|-.||+|+|..+..+. .....++.++|..+.++.++.-+ |.... . -.....|...
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence 34455668999999999997776541 01237899999999988877543 32111 0 1112223221
Q ss_pred -CCceeEEEEccccccc--cC---------------CCCHH-HHHHHHhhcccCCcEEEEEeChh------hHHHHHHH-
Q 010599 413 -PRTYDLIHAHGLFSLY--KD---------------KCNIE-DILLEMDRILRPEGAIIIRDEVD------EIIKVKKI- 466 (506)
Q Consensus 413 -p~s~D~v~~~~~~~~~--~~---------------~~~~~-~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~- 466 (506)
...||+|.++-=|... .+ ....+ ..+..+.+.|++||++++--+.. ....+++.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 2589999997666533 10 01111 46778999999999876643322 34567765
Q ss_pred HhcCCceEEEeecC----CCCCCCeEEEEEEec
Q 010599 467 VGGMRWDTKMVDHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 467 ~~~~~w~~~~~~~~----~~~~~~~~~l~~~k~ 495 (506)
++...-+. ++..- .+...+-.+|+.+|.
T Consensus 202 l~~~~i~a-VI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 202 LENGYIEA-VISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp HHHEEEEE-EEE--TTSSSSSSS-EEEEEEEES
T ss_pred HhhchhhE-EeecccceecccCcCceEEEEeec
Confidence 44433333 33222 233346677777774
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0051 Score=64.20 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=61.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C--CCceeEEEEccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y--PRTYDLIHAHGLFS 426 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~--p~s~D~v~~~~~~~ 426 (506)
.+|||++||+|.++..++.... +..|+++|.+++.++.+.+. ++. .....+.+... + ...||+|..+- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 4799999999999999865321 34799999999999877653 221 11111222211 1 45799999832 1
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-....+|....+.++|||.++|+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12245667756889999999995
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.026 Score=58.41 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=68.1
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC-----C-cEEEecCccchHHHHHHHHHHcCCCe-EEEEeccccCC--CC-CCCeeE
Q 010599 100 NGTVRTALDTGCGVASWGAYLWSR-----N-VIAMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKMP--YA-SRAFDM 169 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~-----~-v~~vdis~~dl~~~~~~~a~~~~~~~-~~~~~d~~~lp--~~-~~sfDl 169 (506)
+.++.+|||+.++.|.=+.+|++. . |+++|+++.-+ +...+....-|+.. .....|...++ .+ .+.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 345569999999999777777664 2 48999977433 33344444556653 55556665443 22 235999
Q ss_pred EEE----c--Cccc-----ccCCC----------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 170 AHC----S--RCLI-----PWGAN----------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~~----~--~~l~-----~~~~~----------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+. + .++. -|... ...+|..+.++|||||.|+.++-..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 994 2 2210 01111 1268999999999999999987544
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0097 Score=60.34 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=73.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--eeccc-cccCCCCC-CceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDW-CEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~-~~~~~~~p-~s~D~v~~~~~ 424 (506)
..+|||==||||+|.-.. +..+.++++.|++..|+.-|..- ++-. .+..| +..+| ++ .++|.|.+.-=
T Consensus 198 G~~vlDPFcGTGgiLiEa---gl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~~~~vdaIatDPP 273 (347)
T COG1041 198 GELVLDPFCGTGGILIEA---GLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LRDNSVDAIATDPP 273 (347)
T ss_pred CCEeecCcCCccHHHHhh---hhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CCCCccceEEecCC
Confidence 457999999999985433 33447999999999999876543 1111 11111 12334 45 57999998322
Q ss_pred cc--cccCCCC----HHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010599 425 FS--LYKDKCN----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 425 ~~--~~~~~~~----~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
.- ....... ...+|.++.++||+||++++.-+.....+ +..+.|++.
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~----~~~~~f~v~ 326 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE----LEELGFKVL 326 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh----HhhcCceEE
Confidence 11 1112222 34799999999999999999766433333 455666655
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.013 Score=58.54 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=63.7
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC---CeEEEEecccc-CC--CCCCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK-MP--YASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~-lp--~~~~sfDlV~~~ 173 (506)
+++|||+=|=||.|+.+.+..| ++.+|.|...+..+..+.+. +++ ...+...|+.. +. -..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4699999999999999877664 78888887666555544443 333 35677777643 21 124689999984
Q ss_pred Cccc-----ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 174 RCLI-----PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 174 ~~l~-----~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..-. ....+-..++..+.++|+|||.|++++..
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2211 11111246788899999999999887643
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.038 Score=52.67 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=70.6
Q ss_pred HHHHHHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC----C-cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc
Q 010599 86 DKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR----N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (506)
Q Consensus 86 ~~~~~~i~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~----~-v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~ 159 (506)
..+...|..-+. ..-.++.+||-+|.++|....++++- | |.++++|+... ...+..|.+|. ++.-...|+.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr- 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDAR- 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TT-
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCC-
Confidence 334344444432 22344569999999999877777653 4 78999999544 56677888773 4444555553
Q ss_pred CC----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 160 MP----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 160 lp----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.| .--+.+|+|++--. + .+....++.++...||+||.++++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa--Q-p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA--Q-PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S--S-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC--C-hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 22 11348999998542 2 2323678888999999999999974
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.056 Score=50.35 Aligned_cols=124 Identities=14% Similarity=0.087 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcC--CCeEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~ 157 (506)
+-.+..-+.+.+++....-.+.++||+=+|+|.++...+.++ ++.+|.+..-.. ...++...-+ ....+...|+
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~-~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVK-ILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHH-HHHHHHHHhCCccceEEEeecH
Confidence 333555566777774212345699999999999999999984 777888653221 1222232223 3455555565
Q ss_pred cc-CCCCCC--CeeEEEEcCcccccCCChHHHHHH--HHHhcCCCeEEEEEcCCC
Q 010599 158 IK-MPYASR--AFDMAHCSRCLIPWGANDGRYMIE--VDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 158 ~~-lp~~~~--sfDlV~~~~~l~~~~~~~~~~l~e--~~rvLkPGG~li~~~p~~ 207 (506)
.. ++-... .||+|+.-.-+..=.-+....+.. -..+|+|+|.+++.....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 42 222222 499999876542100111222222 457899999999976433
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.00086 Score=59.65 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=37.4
Q ss_pred CCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 410 STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 410 ~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++-|+|.|+|.|.+++.|+.- ..-..+++|-+|+|||||+|-|.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 345799999999999997763 34568999999999999999994
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=55.58 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=70.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecc--ccccC-CCCC-CceeEEEEccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHD--WCEAF-STYP-RTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~--~~~~~-~~~p-~s~D~v~~~~~~~~~ 428 (506)
...|+|+||-+|+++..+++.-.....|+++|.- .|-.+.-=.-+-+.++. .-+.+ ..++ ..+|+|.|+.+=...
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~-p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~ 124 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDIL-PMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTS 124 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECc-ccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcC
Confidence 4579999999999988777643222336777765 33222210001111110 00000 1133 347999974433221
Q ss_pred cCCC-------CHHHHHHHHh-hcccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeecC-CCCCCCeEEEEEEe
Q 010599 429 KDKC-------NIEDILLEMD-RILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPEKILVAVK 494 (506)
Q Consensus 429 ~~~~-------~~~~~l~e~~-RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~~~k 494 (506)
.++. .+..+..||. ++|+|||.+++.+- .+.+..++.+++.+.=. ... .-+.+.|.+++|.+
T Consensus 125 g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~----KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 125 GNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIF----KPKASRKRSREIYLVAKG 200 (205)
T ss_pred CCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEe----cCccccCCCceEEEEEec
Confidence 1111 1223445554 59999999999653 34556666655554322 221 11224688888875
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.028 Score=56.84 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=67.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~ 431 (506)
.....+|+|.|.|..+..+... ..-+..+-.|.+ ..++.|..-+ .++-|.-+.-|-..| .=|+|+.-.+++|+.+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp-~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLP-FVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTDE 252 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHH-HHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCChH
Confidence 4678999999999999988873 322344444443 3333333222 444444344444444 23499999999976632
Q ss_pred CCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 432 CNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+...+|+....-|+|||.++|-|.
T Consensus 253 -dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 -DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -HHHHHHHHHHHhCCCCCEEEEEec
Confidence 678899999999999999999654
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.048 Score=48.57 Aligned_cols=97 Identities=15% Similarity=0.043 Sum_probs=56.0
Q ss_pred CCCCEEEEECCCCChhHHHHhh-----C---CcEEEecCccchHHHHHHHHHHcCC----CeEEEEeccccCCCCCCCee
Q 010599 101 GTVRTALDTGCGVASWGAYLWS-----R---NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~-----~---~v~~vdis~~dl~~~~~~~a~~~~~----~~~~~~~d~~~lp~~~~sfD 168 (506)
.....|+|+|||.|+++..|+. . .|+++|.++... +.....+.+.+. ...+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 3456899999999999999988 4 588888887544 333333433331 1222222222111 145567
Q ss_pred EEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 169 MAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 169 lV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++.. |...+. ..+|+.+.+ |+-.+++.+|-
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCC
Confidence 77753 445555 455666555 66666655443
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0096 Score=56.38 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=53.7
Q ss_pred CceEEeecCcccHHHHHHHh--CCCeEEEEeecCCCcccHHHHHhc----Cccc---eeccccccCCCCCCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~--~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~~~~~~~~~~p~s~D~v~~~~ 423 (506)
..+|+||-||.|.|+..+++ ++ ..|+++|..|..++...+- ++-. .++.=+..+.. ...||-|.++.
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~---~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKA---KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-S---SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred ceEEEEccCCccHHHHHHhhhcCc---cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 46899999999999998887 43 4699999988776643322 2222 22221222322 58999888721
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
+ ......|.+..+.+|+||.+.
T Consensus 178 -----p--~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 -----P--ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----T--SSGGGGHHHHHHHEEEEEEEE
T ss_pred -----h--HHHHHHHHHHHHHhcCCcEEE
Confidence 1 122348888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.019 Score=54.00 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=68.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccc-cCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMP 161 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~-~lp 161 (506)
..+.++.++.+. .++.+||.||-|-|.....+.++. -..++-.| ++-+.+...+-...-++....+--+ -++
T Consensus 88 tpiMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-~V~krmr~~gw~ek~nViil~g~WeDvl~ 163 (271)
T KOG1709|consen 88 TPIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-DVLKRMRDWGWREKENVIILEGRWEDVLN 163 (271)
T ss_pred hHHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-HHHHHHHhcccccccceEEEecchHhhhc
Confidence 445566666663 345689999999999888887763 34455544 3323333322211112222222212 222
Q ss_pred -CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 162 -YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 162 -~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++++.||-|+--. +....++...+.+.+.|+|||+|+|-+-
T Consensus 164 ~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 5788999999743 3233455678889999999999998764
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.11 Score=50.91 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=67.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~ 162 (506)
..|..++...++ .+|||-|.|+|+++.+++.. .+...|+-..-..++..++. +.++ .+.+...|....-|
T Consensus 95 a~I~~~L~i~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr-~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 95 AMILSMLEIRPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR-EHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHhcCCCC--CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH-HhCCCcceEEEEeecccCCc
Confidence 456777765554 49999999999999888775 46777774432222222222 2233 35566667765544
Q ss_pred C--CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 163 A--SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~--~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +..+|.|+.-. +.|-.++-.++.+||.+|.-+++.
T Consensus 172 ~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 172 LIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred cccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEec
Confidence 3 67899998743 224456777788999887544443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.078 Score=57.88 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=82.8
Q ss_pred CceEEeecCcccHHHHHHHhCC-------CeEEEEeecCCCcccHHHHHhcC-ccc-----ee--ccccccC---CCCCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSK-------LWVMNVVPTLADKNTLGVIYERG-LIG-----IY--HDWCEAF---STYPR 414 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~-------~~~~~v~~~d~~~~~l~~~~~rg-~~~-----~~--~~~~~~~---~~~p~ 414 (506)
..+|||.+||+|.|..++.+.. ....++.+.|.++..+..++..- ..+ +. ...+..+ ....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4589999999999988776421 12478999999999888776541 001 11 0111111 11226
Q ss_pred ceeEEEEccccccccC--------------------------------CCC----------HH-HHHHH-HhhcccCCcE
Q 010599 415 TYDLIHAHGLFSLYKD--------------------------------KCN----------IE-DILLE-MDRILRPEGA 450 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~--------------------------------~~~----------~~-~~l~e-~~RvLrPgG~ 450 (506)
.||+|.++-=+.-... .+. +- .++.| ..+.|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 8999999644442110 011 11 13445 5899999999
Q ss_pred EEEEeChh-----hHHHHHHH-HhcCCceEEEeecC------CCCCCCeEEEEEEec
Q 010599 451 IIIRDEVD-----EIIKVKKI-VGGMRWDTKMVDHE------DGPLVPEKILVAVKQ 495 (506)
Q Consensus 451 ~ii~d~~~-----~~~~~~~~-~~~~~w~~~~~~~~------~~~~~~~~~l~~~k~ 495 (506)
+.+--+.. .-..+++. ++........ +.+ ++...+..+++.+|.
T Consensus 192 ~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~-~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 192 VSIISPASWLGDKTGENLREYIFNNRLINCIQ-YFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred EEEEEChHHhcCccHHHHHHHHHhCCeeEEEE-ECCccccCcCCCCcceEEEEEECC
Confidence 98854433 34567774 5655555332 222 233345667777764
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0075 Score=60.53 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=34.7
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHH
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEA 138 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~ 138 (506)
+++++.+.+... ++..+||.+||.|.++..+++. .|+++|.++.++..+
T Consensus 7 ll~Evl~~L~~~--pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~a 60 (296)
T PRK00050 7 LLDEVVDALAIK--PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAA 60 (296)
T ss_pred cHHHHHHhhCCC--CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHH
Confidence 445566666433 3458999999999999999876 278888876554333
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.053 Score=56.09 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccC
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKM 160 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~l 160 (506)
..+.+++.+.++++.. +. .|||+-||+|.++..|++. .|+++++++..+.. +.+.|..+++. +.+...++.++
T Consensus 181 ~~~~l~~~~~~~l~~~--~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~-A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLS--KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVED-ARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHHHCTT---TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHH-HHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHHHHhhcC--CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHH-HHHHHHHcCCCcceEEEeeccch
Confidence 3366777788888543 22 7999999999999999987 59999998866643 44455555554 55655444322
Q ss_pred C----------------CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 161 P----------------YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p----------------~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. .....+|+|+.-..-.-. ...++..+. ++.=.+++|..|.
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~~~~---~~~~ivYvSCnP~ 313 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL---DEKVIELIK---KLKRIVYVSCNPA 313 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S---CHHHHHHHH---HSSEEEEEES-HH
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc---hHHHHHHHh---cCCeEEEEECCHH
Confidence 1 123368998764321111 134444443 3455677776544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.17 Score=48.90 Aligned_cols=43 Identities=16% Similarity=-0.007 Sum_probs=34.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.....|||-=||+|+.+.+-.+.+ .+..++|.++...++|.+|
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHH
Confidence 345679999999999776665544 5788999999999988877
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.017 Score=57.75 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=63.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccCC-CC-----CCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFS-TY-----PRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~~-~~-----p~s~D~v~~ 421 (506)
.++|||+=|=||+|+.+.+..| ...|+.+|.|...|+.+.+- |+. ..+..++++.- .+ .+.||+|.+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4589999999999998877765 35799999999999988775 321 22222333321 11 269999998
Q ss_pred cc-ccccccCCC----CHHHHHHHHhhcccCCcEEEEEeC
Q 010599 422 HG-LFSLYKDKC----NIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 422 ~~-~~~~~~~~~----~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+- .|. ..+- +...++....++|+|||.|++.-.
T Consensus 202 DPPsF~--k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFA--KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEE--SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 31 121 1111 233578888999999999988543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.1 Score=52.32 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=36.1
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
..+.....|||-=||+|+-+.+-...+ -+..++|.+++-.++|.+|
T Consensus 204 ~~S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 204 ASSNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred HhCCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 344556789999999999665544433 4789999999999999999
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.024 Score=58.93 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=66.9
Q ss_pred CEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEEEcCcc
Q 010599 104 RTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlV~~~~~l 176 (506)
.+|||+.||+|..+..++.+ .|+++|+++.-+. ...+.+..++.. +.+...|+..+- .....||+|..-. +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 48999999999999998875 3789999885443 333344444443 556656654332 2235799998743 2
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+..++..+.+.+++||.+.++.
T Consensus 124 ----Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ----GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ----CCcHHHHHHHHHhcccCCEEEEEe
Confidence 234679999999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.039 Score=56.61 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCCCEEEEECCCCChhHHHHhhC--------------------CcEEEecCccchHHHHHHHHHHc----CCCeEEE--E
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR--------------------NVIAMSFAPRDSHEAQVQFALER----GVPAVIG--V 154 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~--------------------~v~~vdis~~dl~~~~~~~a~~~----~~~~~~~--~ 154 (506)
...-+|+|+||..|..+..+.+. .|.--|+-.+|...-...+.... ..+..+. +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34568999999999766655432 13445777777754443332221 0122222 2
Q ss_pred ec-cccCCCCCCCeeEEEEcCcccccCCCh------------------------H---------------HHHHHHHHhc
Q 010599 155 LG-TIKMPYASRAFDMAHCSRCLIPWGAND------------------------G---------------RYMIEVDRVL 194 (506)
Q Consensus 155 ~d-~~~lp~~~~sfDlV~~~~~l~~~~~~~------------------------~---------------~~l~e~~rvL 194 (506)
.. ...--||++|.|+++++.++ ||.... . .+|+-=.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 22 33444889999999999988 553221 0 3455556678
Q ss_pred CCCeEEEEEcC
Q 010599 195 RPGGYWVLSGP 205 (506)
Q Consensus 195 kPGG~li~~~p 205 (506)
+|||.++++..
T Consensus 174 v~GG~mvl~~~ 184 (334)
T PF03492_consen 174 VPGGRMVLTFL 184 (334)
T ss_dssp EEEEEEEEEEE
T ss_pred ccCcEEEEEEe
Confidence 99999999763
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.033 Score=56.61 Aligned_cols=98 Identities=7% Similarity=0.033 Sum_probs=60.6
Q ss_pred ceEEeecCcccHHHHHH----HhCCCeEEEEeecCCCcccHHHHHhcCc----c-ceeccccccC-------CC--CCCc
Q 010599 354 RNIMDMNAGFGGFAAAI----QSSKLWVMNVVPTLADKNTLGVIYERGL----I-GIYHDWCEAF-------ST--YPRT 415 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l----~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~-~~~~~~~~~~-------~~--~p~s 415 (506)
..++|+|||.|.=...| ...+ .....+|+|.|.++|+.+.++-. . -.++-.|.+| +. .+..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~-~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQK-KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcC-CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 36999999999854444 3222 13579999999999998877532 1 0111223332 11 1222
Q ss_pred eeE-EEEccccccccCCCCHHHHHHHHhh-cccCCcEEEE
Q 010599 416 YDL-IHAHGLFSLYKDKCNIEDILLEMDR-ILRPEGAIII 453 (506)
Q Consensus 416 ~D~-v~~~~~~~~~~~~~~~~~~l~e~~R-vLrPgG~~ii 453 (506)
..+ ++-.+.|.... +......|.+|.+ .|+|||.|+|
T Consensus 157 ~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 157 PTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred ccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 343 34444555322 2234579999999 9999999999
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.041 Score=57.15 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=60.6
Q ss_pred CCEEEEECCCCChhHHHHhhC-------------------CcEEEecCccchHHHHHHHHHH-------------cCCCe
Q 010599 103 VRTALDTGCGVASWGAYLWSR-------------------NVIAMSFAPRDSHEAQVQFALE-------------RGVPA 150 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-------------------~v~~vdis~~dl~~~~~~~a~~-------------~~~~~ 150 (506)
..+|+|+|||+|.++..+... .+.--|+-.+|...-...+... .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 458999999999666544221 1333466666665444333211 11111
Q ss_pred EEEEe---ccccCCCCCCCeeEEEEcCcccccCCCh--------------------------------------HHHHHH
Q 010599 151 VIGVL---GTIKMPYASRAFDMAHCSRCLIPWGAND--------------------------------------GRYMIE 189 (506)
Q Consensus 151 ~~~~~---d~~~lp~~~~sfDlV~~~~~l~~~~~~~--------------------------------------~~~l~e 189 (506)
.+..+ ....--||++|.++++|+.++ ||.... ..+|+-
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 123334889999999999998 665421 123444
Q ss_pred HHHhcCCCeEEEEEcCCC
Q 010599 190 VDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 190 ~~rvLkPGG~li~~~p~~ 207 (506)
-.+-|.|||.++++....
T Consensus 223 Ra~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHHhccCcEEEEEEecC
Confidence 556789999999986443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.048 Score=54.20 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=88.4
Q ss_pred HHHHHHHHhhCCCCC--CCCCEEEEECCCCChhHHHHhhCCc--EEEecCccchHHHH--HHHHHHcC-C----------
Q 010599 86 DKYIDQLASVIPIKN--GTVRTALDTGCGVASWGAYLWSRNV--IAMSFAPRDSHEAQ--VQFALERG-V---------- 148 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~--~~~~~VLDiGCG~G~~~~~L~~~~v--~~vdis~~dl~~~~--~~~a~~~~-~---------- 148 (506)
..++++|..+.+... ....+||--|||.|+++..|+..|. .+=++|--|+--.. ++.....+ .
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s 211 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS 211 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence 667788888886432 2345799999999999999988753 33334333331111 11111110 0
Q ss_pred --------------C-----------eEE--EEecccc---CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCe
Q 010599 149 --------------P-----------AVI--GVLGTIK---MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGG 198 (506)
Q Consensus 149 --------------~-----------~~~--~~~d~~~---lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG 198 (506)
+ ..+ ..+|... .+-..++||+|+..+. +.-..+.-.++..+..+|||||
T Consensus 212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCc
Confidence 0 000 0011111 1112347999987642 2322333678999999999999
Q ss_pred EEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcceeecccc
Q 010599 199 YWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEK 245 (506)
Q Consensus 199 ~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~ 245 (506)
+++=.+|-..+.....+. .....++-..+.+-.+++.++|+.+.+.
T Consensus 291 vWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred EEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEee
Confidence 999888765443321111 1111233344567777888899887765
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.012 Score=55.11 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=61.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC---CCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY---PRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~---p~s~D~v~~ 421 (506)
..+|||+=||+|.++..-.++|. ..|+-+|.++..+..+++- ++.....-++.+ +... ...||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 45799999999999987787773 5799999998888766654 222212222222 2222 489999999
Q ss_pred ccccccccCCCC-HHHHHHHHh--hcccCCcEEEEEeCh
Q 010599 422 HGLFSLYKDKCN-IEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~-~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
+-=+. ... +..+|..+. .+|+++|.+|+....
T Consensus 121 DPPY~----~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYA----KGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STT----SCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCcc----cchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 43222 111 355666665 899999999996543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.12 Score=52.28 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCCCC-CCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPYA-SRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~---~~~~~~d~~~lp~~-~~sfDlV~~ 172 (506)
...+|||+|.|.|.-+.++-+- .++.++.|+ .+.+-.-.++..-... ..-.......++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 3457999999998655444332 234444444 2222222233222111 00011112345554 346777776
Q ss_pred cCcccccCCCh--HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 173 SRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..-+.|..... ...++.+..++.|||.|++..++.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 55443422111 347888999999999999987654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.24 Score=46.46 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=67.5
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH----HHHHhc-CccceeccccccCCC-CC---CceeEEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL----GVIYER-GLIGIYHDWCEAFST-YP---RTYDLIH 420 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l----~~~~~r-g~~~~~~~~~~~~~~-~p---~s~D~v~ 420 (506)
-.+...||=+|+-+|+-..++.+--. ...+.++..|+.+. .+|.+| .+++.+.| ..+|. |- ...|+|+
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D--A~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILED--ARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecc--cCCcHHhhhhcccccEEE
Confidence 34456899999999999999988522 34588888887654 588888 45666643 33332 22 6789998
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
+ ..-++...+-+...++.-||+||+++|
T Consensus 151 ~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 151 Q-----DVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred E-----ecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 7 112344455678889999999998877
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.0033 Score=56.40 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=36.4
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.....||.|+|+.|+ .+.+....++..+.+.|+|.|.-++..|.-
T Consensus 99 ~eq~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 99 QEQHTFDIILAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HhhCcccEEEeccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 345689999999998 444445889999999999999988887754
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.041 Score=51.89 Aligned_cols=119 Identities=17% Similarity=0.278 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceeccc
Q 010599 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDW 405 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~ 405 (506)
..|.+.+-+- +...+. .+.++||.||=|-|-.+-.+++++.. .=+-+.+.++.++..++-|- +....-|
T Consensus 84 m~WEtpiMha--~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nViil~g~W 158 (271)
T KOG1709|consen 84 MRWETPIMHA--LAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENVIILEGRW 158 (271)
T ss_pred hhhhhHHHHH--HHHHHh-hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccceEEEecch
Confidence 4676655442 222333 45788999999999999999886532 23345678888988877763 3344457
Q ss_pred cccCCCCC-CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh
Q 010599 406 CEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 406 ~~~~~~~p-~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
...++++| .+||-|.- ..|+ .+-.++-..-+-+-|.|||||.+-.-....
T Consensus 159 eDvl~~L~d~~FDGI~y-DTy~--e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 159 EDVLNTLPDKHFDGIYY-DTYS--ELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred HhhhccccccCcceeEe-echh--hHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 78888888 89999885 3332 122366677888899999999998855443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.13 Score=50.35 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=83.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cc----eeccccc-c---CCCCCC-ceeEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IG----IYHDWCE-A---FSTYPR-TYDLI 419 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~----~~~~~~~-~---~~~~p~-s~D~v 419 (506)
..++||=||-|.|+.+..+.+.+ .+.+|+.+|+++.+++++++--. .+ .+.-..+ . +...++ .||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 57899999999999999998754 23578888999999998876311 00 0000011 1 122445 99999
Q ss_pred EEccccccccCC-CCHHHHHHHHhhcccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeec-CCCCCCC-eEEEE
Q 010599 420 HAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDH-EDGPLVP-EKILV 491 (506)
Q Consensus 420 ~~~~~~~~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~-~~~l~ 491 (506)
.....=...... .--...+..+.|.|+|||.+++.-. ......+.+.+++..-.+..... ...-... ..+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~ 234 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFAS 234 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEE
Confidence 984332111100 1124789999999999999999532 22444455556666555543222 1111122 45677
Q ss_pred EEecc
Q 010599 492 AVKQY 496 (506)
Q Consensus 492 ~~k~~ 496 (506)
+.|..
T Consensus 235 ~s~~~ 239 (246)
T PF01564_consen 235 ASKDI 239 (246)
T ss_dssp EESST
T ss_pred EeCCC
Confidence 77654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.023 Score=50.59 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=37.3
Q ss_pred CCCceEEeecCcccHHHHHHHh-----CCCeEEEEeecCCCcccHHHHHhc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQS-----SKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~-----~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.+...|+|+|||-|.++..|+. . ...+|+++|..+..++.+.+|
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 5677899999999999999887 3 347899999998888877766
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.11 Score=49.72 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCEEEEECCCCChhHHHHh----hCCcEEEecCccchHHHHHH-HHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 103 VRTALDTGCGVASWGAYLW----SRNVIAMSFAPRDSHEAQVQ-FALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~----~~~v~~vdis~~dl~~~~~~-~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
+.+++|||+|.|.-+..|+ +.+++-+|-...-+ +.++ ...+-+++ +.+...-++...-...-||+|+|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4699999999997766655 22577677644321 2223 34455666 666666666654221119999996532
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEE
Q 010599 177 IPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
. ...++.-+...+|+||.++.
T Consensus 146 -~----L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 -S----LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -c----hHHHHHHHHHhcccCCcchh
Confidence 2 35677778899999998764
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.016 Score=58.28 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=62.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeE--EEEeecCCCcccHHHHHh--cCccceeccc-----cccCCCCC--CceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWV--MNVVPTLADKNTLGVIYE--RGLIGIYHDW-----CEAFSTYP--RTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~--~~v~~~d~~~~~l~~~~~--rg~~~~~~~~-----~~~~~~~p--~s~D~v~~ 421 (506)
-..|||+|.|+|.-+-++.+ +|- -.++-+.+|+..-+++.. +.......+| .++...+| ..|+++++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 34699999999987766654 331 234445566443333332 1221222222 12223344 88998888
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+=+-+....-.+...+..+..+|.|||.|+|.+.-
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 555544443335567888999999999999997753
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.11 Score=53.89 Aligned_cols=122 Identities=18% Similarity=0.257 Sum_probs=71.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCC-eEEEEeecCCCcccHHHHHhc----Cccc--eeccccccCCC-CC--Ccee
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKL-WVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFST-YP--RTYD 417 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~-~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~~~~~~~-~p--~s~D 417 (506)
+.......||||++++|+=+.+|++.-. ....|+++|.++.-+....++ |+-. ..+.-...++. .+ ..||
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 4555568899999999997777765321 124589999998877765554 4422 11111112222 23 2599
Q ss_pred EEEE------cccccc---c---cCCCCHH-------HHHHHHhhcccCCcEEEEEe----ChhhHHHHHHHHhc
Q 010599 418 LIHA------HGLFSL---Y---KDKCNIE-------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG 469 (506)
Q Consensus 418 ~v~~------~~~~~~---~---~~~~~~~-------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~ 469 (506)
.|.. .+++.. . ....++. .+|....++|||||.|+-+. ..+-.+.++.++.+
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 8886 334420 0 0011111 48999999999999999953 22334455555443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.17 Score=52.23 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=75.8
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC-------------------------------------------
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN------------------------------------------- 124 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~------------------------------------------- 124 (506)
+...|..+....+. ..++|-=||+|.+....+-.+
T Consensus 179 LAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 179 LAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 33344444433333 479999999999877665432
Q ss_pred cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEEcCccc-ccCCC--h----HHHHHHHHHhcC
Q 010599 125 VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLI-PWGAN--D----GRYMIEVDRVLR 195 (506)
Q Consensus 125 v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~-~~~~~--~----~~~l~e~~rvLk 195 (506)
+.++|+++.++.. +..+|+..|+. +.|.+.|+..++-+-+.+|+|+|+...= -+... . ..+.+.+.+.++
T Consensus 257 ~~G~Did~r~i~~-Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 257 IYGSDIDPRHIEG-AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EEEecCCHHHHHH-HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 5599999877744 44566666665 7888889888864447899999986331 11111 1 134445667777
Q ss_pred CCeEEEEEcCCC
Q 010599 196 PGGYWVLSGPPI 207 (506)
Q Consensus 196 PGG~li~~~p~~ 207 (506)
--+.++++++..
T Consensus 336 ~ws~~v~tt~e~ 347 (381)
T COG0116 336 GWSRYVFTTSED 347 (381)
T ss_pred CCceEEEEccHH
Confidence 778888886543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.034 Score=54.99 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=65.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHH---cCCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALE---RGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~---~~~~~~~~~~d~~~l 160 (506)
...++.|.+.+... .+..|||||+|.|.++..|++. .++++++++... +.-.+ ...++.+...|+..+
T Consensus 16 ~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~-----~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLA-----KHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHH-----HHHHHHCTTCSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHH-----HHHHHHhhhcccceeeecchhcc
Confidence 55667777777544 4559999999999999999886 589999976322 22222 345677888888777
Q ss_pred CCCC---CCeeEEEEcCcccccCCChHHHHHHHHHhcCC
Q 010599 161 PYAS---RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRP 196 (506)
Q Consensus 161 p~~~---~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkP 196 (506)
.... +.-..|+++..+ +. ...++..+...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy-~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPY-NI---SSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEETG-TG---HHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEecc-cc---hHHHHHHHhhcccc
Confidence 6544 456677776432 21 25666666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.055 Score=50.58 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=61.0
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------------cceeccccccCCCCCCceeEEE
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------------IGIYHDWCEAFSTYPRTYDLIH 420 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------------~~~~~~~~~~~~~~p~s~D~v~ 420 (506)
-...|||||+|++...|... ....-+.+.++-...-+...+|-. +++.+. -++-+.|+-|---.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~-fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~--namk~lpn~f~kgq 138 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK-FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRT--NAMKFLPNFFEKGQ 138 (249)
T ss_pred ceEEeeccCccchhhhcccc-CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeec--cchhhccchhhhcc
Confidence 34899999999998888754 122345555554333333333310 222222 22333454444322
Q ss_pred Eccccccc--------cCCCCH--HHHHHHHhhcccCCcEEEE-EeChhhHHHHHHHHhcCC
Q 010599 421 AHGLFSLY--------KDKCNI--EDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGMR 471 (506)
Q Consensus 421 ~~~~~~~~--------~~~~~~--~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~~ 471 (506)
.+-.|-.. .|+-.+ ...|.|..=+||+||.++. +|-.+.-+.+...+....
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 22222211 111111 2588899999999999887 455555555555554443
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.027 Score=58.53 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=64.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cceeccccccCC----CCCCceeEEEEcccccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IGIYHDWCEAFS----TYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~~~~~~~~~~~----~~p~s~D~v~~~~~~~~ 427 (506)
+|||+-||+|.++..++....-+-.|+++|.+++.++.+.+.- + +..+.-.+.+.. .....||+|..+- |.
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG- 124 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG- 124 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC-
Confidence 6999999999999998875211357999999999998776542 1 111111122221 1125799999854 32
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.....|...-+.+++||.|.|+
T Consensus 125 -----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 -----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -----CcHHHHHHHHHhcccCCEEEEE
Confidence 3346888999999999999995
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.014 Score=52.55 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=78.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhcCcccee--------ccccccCCCCCCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLIGIY--------HDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~rg~~~~~--------~~~~~~~~~~p~s~D~v~~ 421 (506)
.+.||.+|.|.=++|..|....+.+-.|--.|..+..+. -+..+.....+ +.|.......-.+||+|.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 467999999999999888776555667777776654443 33333211111 1122222122379999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--hhHHHHHHHHhcCCceEEEe
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--~~~~~~~~~~~~~~w~~~~~ 477 (506)
+.-+=.-.++ ++++.-|++.|||.|..++.-+- ..+++..+.+...++.+...
T Consensus 110 ADClFfdE~h---~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 110 ADCLFFDEHH---ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred ccchhHHHHH---HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEec
Confidence 4433322222 35888899999999998886543 36788888888888886654
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.035 Score=52.99 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=61.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc---cceecc-cccc----CCCCC-
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHD-WCEA----FSTYP- 413 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~---~~~~~~-~~~~----~~~~p- 413 (506)
.|+.-+.++.||+|.=||.-+.+++..--....|+++|..++..+++.+ .|. +...+. -++. +..++
T Consensus 68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 3444456789999987776544443211113689999988777665533 232 222211 1122 22244
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+|||+++. .+.+ ..-.....+.-|.|||||.+++-
T Consensus 148 ~tfDfaFv----DadK--~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 148 GTFDFAFV----DADK--DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CceeEEEE----ccch--HHHHHHHHHHHhhcccccEEEEe
Confidence 89999998 3222 12236888889999999999983
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.046 Score=57.85 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~ 158 (506)
.+++.+...+.+++.+..+ ..+||+-||||.++..+++. .|+++++++..+. .+...|..+|+. +.|.++.++
T Consensus 366 ~~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~-dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE-DAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhccccceeeeecChhhcc-hhhhcchhcCccceeeeecchh
Confidence 3446666777888866555 48999999999999999987 6999999997664 444556666664 556655343
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.073 Score=49.47 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=55.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchH-------HHHHHHHHHcCCCe-EEEEeccccCC-------C
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSH-------EAQVQFALERGVPA-VIGVLGTIKMP-------Y 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~-------~~~~~~a~~~~~~~-~~~~~d~~~lp-------~ 162 (506)
++.+|+|+=.|.|+|++-+... | .+..+.|.++. ......+++..... ...-.....++ .
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~ 126 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLV 126 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccccc
Confidence 4559999999999999998775 3 33444443331 11111222211111 11101111222 1
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..++|.++-...+ | ......+..++++.|||||.+.+..+..
T Consensus 127 ~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 127 PTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred ccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 23344444443322 3 2334789999999999999999976433
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.011 Score=49.73 Aligned_cols=95 Identities=17% Similarity=0.072 Sum_probs=35.8
Q ss_pred EeecCcccHHHHHHHhC--CCeEEEEeecCCCc---ccHHHHHhcCccceeccccccC----CCCC-CceeEEEEccccc
Q 010599 357 MDMNAGFGGFAAAIQSS--KLWVMNVVPTLADK---NTLGVIYERGLIGIYHDWCEAF----STYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 357 LD~gcG~G~~~~~l~~~--~~~~~~v~~~d~~~---~~l~~~~~rg~~~~~~~~~~~~----~~~p-~s~D~v~~~~~~~ 426 (506)
|++|+..|..+..|++. ......++.+|..+ ...+.+.+.++...++-...++ +.++ +.||+|+...-=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H- 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH- 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-
Confidence 57899999987777652 11113688888876 4444554444433333333332 2344 899999983311
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.......-|..+.+.|+|||.+++-|
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11234567888889999999999865
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.056 Score=54.13 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEE-eccccC-C-CCCCCeeEEEE
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGV-LGTIKM-P-YASRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~-~d~~~l-p-~~~~sfDlV~~ 172 (506)
.++..|||+.+|.|.=+..+++. .+++.|++..-+. .........|....... .|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34558999999999877777654 3889999775332 22334444565544333 555443 2 22346999995
Q ss_pred ----cCcccccCCCh------------------HHHHHHHHHhc----CCCeEEEEEcCCC
Q 010599 173 ----SRCLIPWGAND------------------GRYMIEVDRVL----RPGGYWVLSGPPI 207 (506)
Q Consensus 173 ----~~~l~~~~~~~------------------~~~l~e~~rvL----kPGG~li~~~p~~ 207 (506)
+... .+..++ ..+|..+.+.| ||||+++.++-..
T Consensus 163 DaPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 3221 111111 16789999999 9999999987433
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.23 Score=52.63 Aligned_cols=119 Identities=13% Similarity=0.207 Sum_probs=78.6
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc---cccCCCCC---
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW---CEAFSTYP--- 413 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~---~~~~~~~p--- 413 (506)
.+..+...+..+|||+=||.|+|+..|+++. ..|++++.++++++.|.+- |+ .+.+.- .|.+..-.
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHHhhhcccc
Confidence 3444555556789999999999999999753 7899999999999876553 32 212221 22222211
Q ss_pred CceeEEEEccccccccCCCCHH-HHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCce
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIE-DILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~-~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~ 473 (506)
..+|+|.. =++|..+. .+++++. -++|-..++|+-....+..=-.++.+-+..
T Consensus 361 ~~~d~Vvv------DPPR~G~~~~~lk~l~-~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 361 YKPDVVVV------DPPRAGADREVLKQLA-KLKPKRIVYVSCNPATLARDLAILASTGYE 414 (432)
T ss_pred CCCCEEEE------CCCCCCCCHHHHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHHhCCeE
Confidence 47798887 13566665 5666664 478999999998876554433445555554
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.076 Score=52.22 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=52.5
Q ss_pred CCCEEEEECCCCC--hhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCC-----------
Q 010599 102 TVRTALDTGCGVA--SWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMP----------- 161 (506)
Q Consensus 102 ~~~~VLDiGCG~G--~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp----------- 161 (506)
..+..||||||-- ...-.++++ .|.-+|..|.-+..+..-++ .... ..+..+|..+..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 4568999999954 345555443 58889998754433222222 2233 567777753211
Q ss_pred CC-CCCeeEEEEcCcccccCC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 162 YA-SRAFDMAHCSRCLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~-~~sfDlV~~~~~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+. +... .|+...++++..+ ++..++..+...|.||.+|+++..
T Consensus 146 lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 11 2222 4555566766544 447999999999999999999853
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.099 Score=50.59 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCCCC-CceeEEEEcccc----ccccCC--------CCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010599 409 FSTYP-RTYDLIHAHGLF----SLYKDK--------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 409 ~~~~p-~s~D~v~~~~~~----~~~~~~--------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
+..+| +|+|+|.++-=. .....+ .-+..++.|+.|||||||.+++--.......+...+.+.+|.+.
T Consensus 13 l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 13 MARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVV 92 (227)
T ss_pred HHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEe
Confidence 44556 899998885211 100000 11357899999999999999874332223445556677777644
Q ss_pred --EeecCCC-------CCCCeEEEEEEec
Q 010599 476 --MVDHEDG-------PLVPEKILVAVKQ 495 (506)
Q Consensus 476 --~~~~~~~-------~~~~~~~l~~~k~ 495 (506)
++=...+ ....|.++++.|.
T Consensus 93 ~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 93 GHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred eEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 1111111 1234777777764
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.57 Score=44.01 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=72.9
Q ss_pred HHHHHHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC---C-cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR---N-VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~---~-v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
..+...|..-+. .+-..+.+||=+|+.+|....++++- | +.++++|+... ...+..+.+|. ++.-...|+ +.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~-Ni~PIL~DA-~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRP-NIIPILEDA-RK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCC-Cceeeeccc-CC
Confidence 344444544442 22344569999999999877777653 4 88999999766 45667777663 222233343 33
Q ss_pred C----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 P----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
| .--+..|+|++--+ + .....-+..++...||+||+++++.
T Consensus 136 P~~Y~~~Ve~VDviy~DVA--Q-p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA--Q-PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cHHhhhhcccccEEEEecC--C-chHHHHHHHHHHHhcccCCeEEEEE
Confidence 3 12346899998432 1 2223677888999999999888864
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.084 Score=48.78 Aligned_cols=91 Identities=19% Similarity=0.114 Sum_probs=60.0
Q ss_pred EEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 105 TALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~-----~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.|+|+|+|.++...++. +|.+++.+|.- ...|.++ ..+......|+....| ...|+|+|-..=.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~-----a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPKR-----ARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcHH-----HHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 7899999999877666554 68999987642 2334333 2335666777777777 4689999943211
Q ss_pred ccCCC-hHHHHHHHHHhcCCCeEEEE
Q 010599 178 PWGAN-DGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 178 ~~~~~-~~~~l~e~~rvLkPGG~li~ 202 (506)
.+... .-..+..+...||-.+.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 12222 24677777778888888764
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.035 Score=50.72 Aligned_cols=110 Identities=17% Similarity=0.325 Sum_probs=56.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCC-C-ceeEEEEc-
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYP-R-TYDLIHAH- 422 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p-~-s~D~v~~~- 422 (506)
++|+|+.||.||-+.+++... -.|+++|.++..++.|+.- |+...+...+.+ ++... + .||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999864 5799999999999977664 322122222333 23333 2 28999973
Q ss_pred ----------ccccccc--CCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHh
Q 010599 423 ----------GLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 468 (506)
Q Consensus 423 ----------~~~~~~~--~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~ 468 (506)
..|.... ...++..++..+.++- |.=.+.+ -....+..|.+++.
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-~nv~l~L-PRn~dl~ql~~~~~ 133 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-PNVVLFL-PRNSDLNQLSQLTR 133 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S-EEEEE-ETTB-HHHHHHT--
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-CCEEEEe-CCCCCHHHHHHHhc
Confidence 3454412 2234566776665553 3322222 22223455555543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.1 Score=47.66 Aligned_cols=69 Identities=26% Similarity=0.236 Sum_probs=41.7
Q ss_pred EEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC--CCCCC-eeEEEEcC
Q 010599 105 TALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP--YASRA-FDMAHCSR 174 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp--~~~~s-fDlV~~~~ 174 (506)
.|+|+.||.|..+..++.. .|+++|+++.-+ .-+...|.-.|+ ++.+..+|...+. +.... ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999999987 499999977544 233344555554 3677777764432 22222 89999754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.33 Score=50.31 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=65.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhh----CC-cEEEecCccchHHHHHHHHHHcCCCeE-EEEeccccCC---CCCCCeeE
Q 010599 99 KNGTVRTALDTGCGVASWGAYLWS----RN-VIAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKMP---YASRAFDM 169 (506)
Q Consensus 99 ~~~~~~~VLDiGCG~G~~~~~L~~----~~-v~~vdis~~dl~~~~~~~a~~~~~~~~-~~~~d~~~lp---~~~~sfDl 169 (506)
.+.++.+|||+.+..|.=+.+++. .| +.+.|.+..-+ +...+.+..-|+... ....|...+| |+. +||-
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 345677999999999954444433 35 56777655333 333445555566543 3444555554 444 8999
Q ss_pred EE----EcCcccccCC-----------------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 170 AH----CSRCLIPWGA-----------------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 170 V~----~~~~l~~~~~-----------------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+ |+.+-.-+.+ -..++|..+...+++||+|+.++-..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99 4441111100 01367888899999999999987544
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.31 Score=50.70 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=43.6
Q ss_pred CceEEeecCcccHHHHHHH--------hC------CCeEEEEeecCCCcccHHHHHhcCccce-----------------
Q 010599 353 YRNIMDMNAGFGGFAAAIQ--------SS------KLWVMNVVPTLADKNTLGVIYERGLIGI----------------- 401 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~--------~~------~~~~~~v~~~d~~~~~l~~~~~rg~~~~----------------- 401 (506)
.-+|+|+|||+|..+..+. ++ ......|.--|.+.|--+..+.. +...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~-L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQL-LPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhh-chhhhhhhcchhhhccccCCC
Confidence 4579999999997654432 11 12246677777765554433322 1100
Q ss_pred -e--ccccccCCC--CC-CceeEEEEccccccccC
Q 010599 402 -Y--HDWCEAFST--YP-RTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 402 -~--~~~~~~~~~--~p-~s~D~v~~~~~~~~~~~ 430 (506)
+ ......|-. +| +|.+++|++..++++.+
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceeccc
Confidence 0 000011111 56 99999999999986653
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.46 Score=47.46 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=46.2
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE--------EeChh---------hHHHHHHHHhcCCceEEE
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--------RDEVD---------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii--------~d~~~---------~~~~~~~~~~~~~w~~~~ 476 (506)
++||+|.....+.. -.++-+.|.-|..+|||||..|= .|..+ ..+.|..+++.++|++..
T Consensus 258 ~~~d~VvTcfFIDT---a~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDT---AHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEeec---hHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 47998887655542 23677899999999999998764 34211 568899999999999775
Q ss_pred ee
Q 010599 477 VD 478 (506)
Q Consensus 477 ~~ 478 (506)
.+
T Consensus 335 e~ 336 (369)
T KOG2798|consen 335 ER 336 (369)
T ss_pred ee
Confidence 43
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.24 Score=46.14 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=61.7
Q ss_pred CCCceEEeecCcccHHHHHHHhC---CCeEEEEeecCCC-------cccHHHHHhcCccceecccc---ccCCCCCCcee
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLAD-------KNTLGVIYERGLIGIYHDWC---EAFSTYPRTYD 417 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~---~~~~~~v~~~d~~-------~~~l~~~~~rg~~~~~~~~~---~~~~~~p~s~D 417 (506)
....+|.|+=-|-|.|.+.+... ...|-+++|.+.. +.+-.+++|.+. .+..-.. -++. .|+-.|
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq~~d 124 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQKLD 124 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCCccc
Confidence 34567999999999998887642 2256777776652 122223333332 1110001 1222 336666
Q ss_pred EEEEcccccc----ccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 418 LIHAHGLFSL----YKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 418 ~v~~~~~~~~----~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++...+.-+. ..|......+..++++.|||||.+.+.|.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 6655333331 12344567899999999999999999653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.67 Score=47.96 Aligned_cols=122 Identities=14% Similarity=0.252 Sum_probs=68.5
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccc---cccCCC--
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDW---CEAFST-- 411 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~---~~~~~~-- 411 (506)
|...+..+...+. +|||+-||.|.|+..|++.. -.|++++..+++++.|.+- ++ ..+... ++++..
T Consensus 186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHH
T ss_pred HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHH
Confidence 3334444444433 69999999999999999865 4799999999999877643 32 222211 222211
Q ss_pred --------C------CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEE
Q 010599 412 --------Y------PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 412 --------~------p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~ 476 (506)
. ...+|+|.. . ++|..+...+.++ +.++.=.++|+-... ..+.++.+.+ +|++..
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vil----D--PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~~ 330 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVIL----D--PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLEK 330 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEEE
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEE----c--CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEEE
Confidence 1 125788876 1 2344444333333 235667888886654 4566666543 788664
Q ss_pred e
Q 010599 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 331 v 331 (352)
T PF05958_consen 331 V 331 (352)
T ss_dssp E
T ss_pred E
Confidence 3
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.39 Score=48.88 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH--c-----CCCeEEEEecccc-CCCCCCCeeE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE--R-----GVPAVIGVLGTIK-MPYASRAFDM 169 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~--~-----~~~~~~~~~d~~~-lp~~~~sfDl 169 (506)
..++||=+|.|.|--++.|.+. .++-+|++|.|++-+....+.. + ...+.....|+.+ +.-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 3468999999999999999886 5888999988776554322221 1 1234445445433 2334568999
Q ss_pred EEEcCcccccCCCh-----HHHHHHHHHhcCCCeEEEEEc
Q 010599 170 AHCSRCLIPWGAND-----GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 170 V~~~~~l~~~~~~~-----~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+.-.. .+-.+.. ..+..-+.|.|+++|.+++..
T Consensus 369 vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 997431 1111101 267777889999999999964
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.068 Score=47.21 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=33.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
+|||+|||+|.++..++..+. ...|+++|.++.+.+.+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHH
Confidence 489999999999988887542 23799999999998866654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.6 Score=40.56 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=67.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------cceeccccccCCCCC-CceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~~~~~~~~~~~~~p-~s~D~v~~ 421 (506)
-.+|||+||.+|.+..--.++.....-|.++|+- .+.--+|. ...+...-|++ | +..|+|.+
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll----h~~p~~Ga~~i~~~dvtdp~~~~ki~e~l---p~r~VdvVlS 142 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL----HIEPPEGATIIQGNDVTDPETYRKIFEAL---PNRPVDVVLS 142 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeee----eccCCCCcccccccccCCHHHHHHHHHhC---CCCcccEEEe
Confidence 4589999999999876555543233456666642 11111221 01111122333 5 88999988
Q ss_pred cccccccc-----CCCCHH---HHHHHHhhcccCCcEEEEE-----eChhhHHHHHHHHhcCCceEEEeecC-CCCCCCe
Q 010599 422 HGLFSLYK-----DKCNIE---DILLEMDRILRPEGAIIIR-----DEVDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPE 487 (506)
Q Consensus 422 ~~~~~~~~-----~~~~~~---~~l~e~~RvLrPgG~~ii~-----d~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~ 487 (506)
.-+=.... |-..++ .+|.=.--.|+|+|.++.. +.......|++.+...+ .+..+ .-..+.|
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk----~vKP~Asr~eS~E 218 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK----KVKPDASRDESAE 218 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE----eeCCccccccccc
Confidence 43322111 110111 2333333567899999994 33334455555544332 32222 1111468
Q ss_pred EEEEEEe
Q 010599 488 KILVAVK 494 (506)
Q Consensus 488 ~~l~~~k 494 (506)
.+++|++
T Consensus 219 ~y~v~~~ 225 (232)
T KOG4589|consen 219 TYLVCLN 225 (232)
T ss_pred eeeeeee
Confidence 8999876
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.025 Score=47.49 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=37.8
Q ss_pred EEECCCCChhHHHHhhC-------CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccC-C-CCCCCeeEEEEcCc
Q 010599 107 LDTGCGVASWGAYLWSR-------NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKM-P-YASRAFDMAHCSRC 175 (506)
Q Consensus 107 LDiGCG~G~~~~~L~~~-------~v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~l-p-~~~~sfDlV~~~~~ 175 (506)
||||+..|..+..+++. .+.++|..+. .+...+..++.+ ..+.+...+.... + ++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999887777653 3788888663 112222222222 2366666665322 1 33578999998542
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 176 LIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 32222357788899999999999875
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.21 Score=50.15 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhhCCCCCC---CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEE
Q 010599 83 QGADKYIDQLASVIPIKNG---TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIG 153 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~---~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~ 153 (506)
.+...|+.-|.++|..... ...++||||+|....-..|..+ .++|+||++..+..+........++. +.+.
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 3446787878887743221 1458999999988554444433 58899998876666655554432343 3333
Q ss_pred Eecc-cc----CCCCCCCeeEEEEcCccc
Q 010599 154 VLGT-IK----MPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 154 ~~d~-~~----lp~~~~sfDlV~~~~~l~ 177 (506)
.... .. +..+...||+.+|+.-|+
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----
T ss_pred EcCCccccchhhhcccceeeEEecCCccc
Confidence 2221 11 222346899999998763
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.14 Score=51.24 Aligned_cols=126 Identities=19% Similarity=0.257 Sum_probs=74.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--ee-ccccccCCCCC-CceeEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IY-HDWCEAFSTYP-RTYDLI 419 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~-~~~~~~~~~~p-~s~D~v 419 (506)
+.......||||+|++|+-+.+|++.-.-...|++.|.++.-+....++ |+.. .. .+-....+..+ ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 3445566799999999997766665211124799999998888766554 4311 11 11111111123 459988
Q ss_pred EEc----cccccccCCCCHH----------------HHHHHHhhcc----cCCcEEEEEe----ChhhHHHHHHHHhcC-
Q 010599 420 HAH----GLFSLYKDKCNIE----------------DILLEMDRIL----RPEGAIIIRD----EVDEIIKVKKIVGGM- 470 (506)
Q Consensus 420 ~~~----~~~~~~~~~~~~~----------------~~l~e~~RvL----rPgG~~ii~d----~~~~~~~~~~~~~~~- 470 (506)
..+ +.- .+....++. .+|....+.| ||||+++-+. ..+-.+.++.++++-
T Consensus 161 lvDaPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 161 LVDAPCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEECSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hcCCCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 872 221 111122221 4899999999 9999999964 233455666666654
Q ss_pred CceE
Q 010599 471 RWDT 474 (506)
Q Consensus 471 ~w~~ 474 (506)
.++.
T Consensus 240 ~~~l 243 (283)
T PF01189_consen 240 DFEL 243 (283)
T ss_dssp SEEE
T ss_pred CcEE
Confidence 4543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.026 Score=47.67 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=29.5
Q ss_pred eeEEEEccccc--cccCCC-CHHHHHHHHhhcccCCcEEEEE
Q 010599 416 YDLIHAHGLFS--LYKDKC-NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 416 ~D~v~~~~~~~--~~~~~~-~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
||+|.|-+|-- |+.+.+ .+..++..|++.|||||.||+.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 89999955543 333333 4678999999999999999994
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.22 Score=48.82 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--c--ceeccccccCCCCC-CceeEEEEc--
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--I--GIYHDWCEAFSTYP-RTYDLIHAH-- 422 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~--~~~~~~~~~~~~~p-~s~D~v~~~-- 422 (506)
......||.+|-|||.+...|.+.+ ..|++++..+.|+....+|+- . +-..-...++-..| -.||++.++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLP 132 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCC
Confidence 3445679999999999999999986 579999999999999998853 2 11111123333344 678887772
Q ss_pred ------cccccccCC----CCHH--HHHHHHhhcccCCcEEEEEeC
Q 010599 423 ------GLFSLYKDK----CNIE--DILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 423 ------~~~~~~~~~----~~~~--~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+|-.+.++ |.+. +.-.-+.-+-|||-.++.+=.
T Consensus 133 yqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrls 178 (315)
T KOG0820|consen 133 YQISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLS 178 (315)
T ss_pred ccccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceee
Confidence 344444433 3211 111112226678887777543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.73 Score=45.78 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=67.5
Q ss_pred CceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHh--c---CccceeccccccCCC--CC-CceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE--R---GLIGIYHDWCEAFST--YP-RTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~--r---g~~~~~~~~~~~~~~--~p-~s~D~v~~~~ 423 (506)
-++|+=||+|+=-+++.+..+ -.....|..+|.+++.++.++. + |+-..+...+.+... .+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 358999999988877766542 1234678899999888886643 1 221111112222222 33 7899988755
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.... ...+...+|..+.+.++||..+++|-..+ .+-.......--+|++...-+-.++ .-.-++++||.
T Consensus 201 lVg~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~-ViNSvv~~rk~ 272 (276)
T PF03059_consen 201 LVGM--DAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDE-VINSVVFARKK 272 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT----EEEEE---
T ss_pred hccc--ccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCC-ceeEEEEEEec
Confidence 4432 23467889999999999999999996543 1111111112228987655453332 34558888885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.31 Score=45.56 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCc-cceeccccc
Q 010599 333 KWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL-IGIYHDWCE 407 (506)
Q Consensus 333 ~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~-~~~~~~~~~ 407 (506)
.|...+.--.-++..-.+-..++|||+|+|.|--+.+-+..| ...|+..|..+...+.+.- .|. +...| .
T Consensus 60 ~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~---~ 134 (218)
T COG3897 60 AWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVSILFTH---A 134 (218)
T ss_pred HHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccceeEEee---c
Confidence 455544322223333344456789999999998654444433 2467888887655543321 121 33333 2
Q ss_pred cCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 408 AFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 408 ~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+.-.-|..||+|.++.+|= ++..-..++.=.+|....|-.++|-|+
T Consensus 135 d~~g~~~~~Dl~LagDlfy---~~~~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 135 DLIGSPPAFDLLLAGDLFY---NHTEADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred cccCCCcceeEEEeeceec---CchHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 2223569999999988886 454445566655566666666666665
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.44 Score=44.43 Aligned_cols=109 Identities=21% Similarity=0.320 Sum_probs=68.7
Q ss_pred HHhhhcCC--CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc---cceeccc-cccCCCC
Q 010599 343 KINRLLDS--GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDW-CEAFSTY 412 (506)
Q Consensus 343 ~~~~~i~~--~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~---~~~~~~~-~~~~~~~ 412 (506)
.+++.+.. -...++||+=||+|.++..-.++|. -.++-+|.+...+.++.+- ++ ...++.- ...++..
T Consensus 32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 34444443 3455799999999999988888774 5788888888888877664 11 1111111 1112223
Q ss_pred C--CceeEEEEccccccccCCCCH--HH--HHHHHhhcccCCcEEEEEeCh
Q 010599 413 P--RTYDLIHAHGLFSLYKDKCNI--ED--ILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 413 p--~s~D~v~~~~~~~~~~~~~~~--~~--~l~e~~RvLrPgG~~ii~d~~ 457 (506)
. ..||+|+.+-=|. ..-+ +. .+.+-..+|+|+|.+++....
T Consensus 110 ~~~~~FDlVflDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 110 GTREPFDLVFLDPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCCcccEEEeCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 3 3599999955554 2222 22 333366899999999996554
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.57 Score=49.59 Aligned_cols=98 Identities=12% Similarity=0.235 Sum_probs=69.5
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc-----eeccccccCCCCCCceeEEEEcccccccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-----IYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~-----~~~~~~~~~~~~p~s~D~v~~~~~~~~~~ 429 (506)
++|=+|||--.+...|.+.|. .+++-+|.|+-.++.+..++.-. ....-...+.+-+.+||+|..-+.|.++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 799999999999999998765 68899999988888777776311 11000112333449999999877666543
Q ss_pred CCC-------CHHHHHHHHhhcccCCcEEEEE
Q 010599 430 DKC-------NIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 430 ~~~-------~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-. .....+.|++|+|+|||+++.-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 211 2235889999999999997764
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.2 Score=46.94 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.9
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEec
Q 010599 105 TALDTGCGVASWGAYLWSR----NVIAMSF 130 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdi 130 (506)
...|||||.|.+...|+.. -+.+++|
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehh
Confidence 6899999999999999887 2667766
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.17 Score=51.71 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=60.5
Q ss_pred CceEEeecCc-ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccc-cccCCCCCCceeEEEEccccccccC
Q 010599 353 YRNIMDMNAG-FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDW-CEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG-~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~-~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
...|+=+|+| .|..|..+++. ...+|+++|.+++.++.|++-|..-.+..- .+.++.....||+|...
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t-------- 236 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT-------- 236 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC--------
Confidence 3445555555 55667777662 227999999999999999988754333221 11222233559998871
Q ss_pred CCCHHHHHHHHhhcccCCcEEEEE
Q 010599 431 KCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.. ...+...-+.||+||++++-
T Consensus 237 -v~-~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 -VG-PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred -CC-hhhHHHHHHHHhcCCEEEEE
Confidence 12 55788888999999999994
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.1 Score=44.51 Aligned_cols=101 Identities=10% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCEEEEECCCCChhHHHHhh-C-----CcEEEecCccchHHHHHHHHH---HcCCCeEEEEeccccCCCCCCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWS-R-----NVIAMSFAPRDSHEAQVQFAL---ERGVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~-~-----~v~~vdis~~dl~~~~~~~a~---~~~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
+.+|+=||||.=-++..+.. + .++++|+++.....+. +... .-+....+...|....+..-..||+|+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 45999999997766555543 2 2678888764333222 1212 12445677777776666555689999986
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...-.-..+...++..+.+.++||..+++..
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5332111244899999999999999999873
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.031 Score=53.15 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=79.0
Q ss_pred hhhhhhHHHHHHHHHHhh-----hcCCCCCceEEeecCcccHHHHHHHhCC--------CeEEEEeecCCCcccHHHH--
Q 010599 329 EDSNKWKKHVNAYKKINR-----LLDSGRYRNIMDMNAGFGGFAAAIQSSK--------LWVMNVVPTLADKNTLGVI-- 393 (506)
Q Consensus 329 ~~~~~W~~~v~~y~~~~~-----~i~~~~~~~vLD~gcG~G~~~~~l~~~~--------~~~~~v~~~d~~~~~l~~~-- 393 (506)
+..+.|+.+-.. +|+. .|-. +.++|.|+++.+|.+...|.++= ...-.++++|+. .|..+-
T Consensus 16 AKe~gwRARSAF--KLlqideef~i~~-gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ-~MaPI~GV 91 (294)
T KOG1099|consen 16 AKENGWRARSAF--KLLQIDEEFQIFE-GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQ-PMAPIEGV 91 (294)
T ss_pred HHhccchHHhHH--HHhhhhhhhhHHh-hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecc-cCCccCce
Confidence 345677765542 2222 2222 37789999999999988775421 001138899986 666532
Q ss_pred -HhcCccceeccccccCCCCC-CceeEEEEccccccc--------cCCCCHHHHHHHHhhcccCCcEEEE-----EeChh
Q 010599 394 -YERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY--------KDKCNIEDILLEMDRILRPEGAIII-----RDEVD 458 (506)
Q Consensus 394 -~~rg~~~~~~~~~~~~~~~p-~s~D~v~~~~~~~~~--------~~~~~~~~~l~e~~RvLrPgG~~ii-----~d~~~ 458 (506)
.-+|-|........-+..|. .--|+|.|.++=... .+..-+..+|.=..+||||||.|+- +|..-
T Consensus 92 ~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tsl 171 (294)
T KOG1099|consen 92 IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSL 171 (294)
T ss_pred EEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHH
Confidence 11111111100011122244 477899986553311 1122233577777899999999986 44444
Q ss_pred hHHHHHHHHhcCCc
Q 010599 459 EIIKVKKIVGGMRW 472 (506)
Q Consensus 459 ~~~~~~~~~~~~~w 472 (506)
.-..|+.+++++.-
T Consensus 172 Lysql~~ff~kv~~ 185 (294)
T KOG1099|consen 172 LYSQLRKFFKKVTC 185 (294)
T ss_pred HHHHHHHHhhceee
Confidence 55678888777643
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.29 Score=48.11 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=50.8
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC--C--ceeEE
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP--R--TYDLI 419 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p--~--s~D~v 419 (506)
...+......+||+||+|.|.++..|.+++ -.|++++..+.++++-.++.- .+.+.-..+++-.++ . .++.|
T Consensus 23 v~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~v 99 (259)
T COG0030 23 VEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKV 99 (259)
T ss_pred HHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEE
Confidence 333444446789999999999999999976 468899999888888877742 121111224444444 2 57788
Q ss_pred EE
Q 010599 420 HA 421 (506)
Q Consensus 420 ~~ 421 (506)
.+
T Consensus 100 Va 101 (259)
T COG0030 100 VA 101 (259)
T ss_pred EE
Confidence 77
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.37 Score=47.01 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=73.8
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc----------------eecc-ccccCCCCCCcee
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG----------------IYHD-WCEAFSTYPRTYD 417 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~----------------~~~~-~~~~~~~~p~s~D 417 (506)
+|||+=||+|..+..++..| ..|+.++-++.+..+.. .|+-. .++. -.+-+...+.+||
T Consensus 91 ~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~-dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD 166 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLD-DGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_pred EEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHH-HHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence 89999999999999999987 45999998865444322 22211 1111 0111222346899
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEeccc
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQYW 497 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~w 497 (506)
+|+.+-.|.+-... ..+.+|| |+++. |+ -+..+..+-|+.-+...+=+|.+-+...++ .|..+|+-.
T Consensus 167 VVYlDPMfp~~~ks---a~vkk~m-r~~~~---l~-g~d~d~~~lL~~Al~~A~kRVVVKrp~~a~-----~l~~~~p~~ 233 (250)
T PRK10742 167 VVYLDPMFPHKQKS---ALVKKEM-RVFQS---LV-GPDLDADGLLEPARLLATKRVVVKRPDYAP-----PLAGVATPN 233 (250)
T ss_pred EEEECCCCCCCccc---cchhhhH-HHHHH---hc-CCCCChHHHHHHHHHhcCceEEEecCCCCC-----CcCCCCCCc
Confidence 99999999853322 2367777 55542 11 122233455666666666676665554333 444444443
Q ss_pred c
Q 010599 498 V 498 (506)
Q Consensus 498 ~ 498 (506)
.
T Consensus 234 ~ 234 (250)
T PRK10742 234 A 234 (250)
T ss_pred e
Confidence 3
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.32 Score=46.51 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=61.2
Q ss_pred EEcCCCCC-CChhhHHHHHHHHHhhCC----CCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHH
Q 010599 72 FRFPGGGT-QFPQGADKYIDQLASVIP----IKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQF 142 (506)
Q Consensus 72 ~~f~~~~~-~f~~~~~~~~~~i~~~l~----~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~ 142 (506)
+.+|.+-- ...++...|++.++++|. ...++..++||||.|.--.-..+-.+ .+++.|+++..++.++...
T Consensus 43 wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii 122 (292)
T COG3129 43 WDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAII 122 (292)
T ss_pred ecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHH
Confidence 44554432 133566778888888883 22345668999998866443333332 4678888877776666555
Q ss_pred HHHcCCC--eEEEEecccc-----CCCCCCCeeEEEEcCccc
Q 010599 143 ALERGVP--AVIGVLGTIK-----MPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 143 a~~~~~~--~~~~~~d~~~-----lp~~~~sfDlV~~~~~l~ 177 (506)
....+.. +.+....... +--..+.||+++|+..||
T Consensus 123 ~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 123 SANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred HcCcchhhheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 5443332 2222111111 112257899999998763
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.22 Score=43.86 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=27.0
Q ss_pred EEEEECCCCChhHHHHhhC----CcEEEecCccchHHHH
Q 010599 105 TALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQ 139 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~ 139 (506)
++||||||.|.++..++.. .+.+++.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999988875 3788888776554333
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 506 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 8e-08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-07 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 9e-07 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-06 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 2e-06 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-06 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 6e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 7e-06 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 7e-06 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 8e-06 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-05 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 2e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 3e-05 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-05 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 4e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 5e-05 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 6e-05 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 8e-05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-04 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 2e-04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 2e-04 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-04 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 3e-04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 3e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 3e-04 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 3e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 4e-04 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 4e-04 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 5e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 3e-10
Identities = 72/462 (15%), Positives = 127/462 (27%), Gaps = 152/462 (32%)
Query: 64 WI---QYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL 120
W + E V +F + Y L S PIK + ++ T Y+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLR-----INY-KFLMS--PIKTEQRQPSMMTR-------MYI 113
Query: 121 WSRN-------VIAMSFAPRDSHEAQVQFAL-----ERGVPAVIGVLGTIKMPYASRAFD 168
R+ V A R +++ AL + V + GVLG+ K
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGK--------- 163
Query: 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQR 228
+ +V + +W+ N K P+ L+ Q+
Sbjct: 164 -----TWVALDVCLS----YKVQCKMDFKIFWL----------NLKNCNSPETVLEMLQK 204
Query: 229 KIEEIANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDA-DDVWYKKM-- 285
+ +I +++ RR + +V K
Sbjct: 205 LLYQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 286 ---EGC----ITPYPEVA-------------GGELKAFPER----LYA---------IPP 312
C T + +V L +P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 313 RISSGSIP---GVSAESYQEDSNKWK--KHVNAYKKINRL-------LDSGRYRNIMDMN 360
+ + + P + AES ++ W KHVN K+ + L+ YR + D
Sbjct: 321 EVLTTN-PRRLSIIAESIRDGLATWDNWKHVN-CDKLTTIIESSLNVLEPAEYRKMFDR- 377
Query: 361 AGFGGF--AAAIQS---SKLW-------VMNVVPTLADKNTLGVIYERGLIGIYHDWCEA 408
F +A I + S +W VM VV L + + E+ E
Sbjct: 378 --LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV----EK-------QPKE- 423
Query: 409 FSTYPRTYDLIHAHGLFSLYKDKCNIE----DILLEMDRILR 446
T + ++ K K E +++ I +
Sbjct: 424 -----STISI---PSIYLELKVKLENEYALHRSIVDHYNIPK 457
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 8e-08
Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 40/219 (18%)
Query: 23 HCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFP 82
H A +GYV P R P +A + + +A + Y+
Sbjct: 25 HQFDMAKEGYVNLLPVQHKRSRDPGDSA--EMMQARRAFLDAGHYQPLRDAI-------- 74
Query: 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEA 138
+ QL + K V LD GCG + + +
Sbjct: 75 ------VAQLRERLDDKATAV---LDIGCGEGYYTHAFADALPEITTFGLDVSK-----V 120
Query: 139 QVQFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPG 197
++ A +R P V + + ++P++ + D E+ RV++PG
Sbjct: 121 AIKAAAKRY-PQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAE--------ELARVVKPG 171
Query: 198 GYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANL 236
G+ + + P E+ E++
Sbjct: 172 GWVITATPGPRHLMEL--KGLIYNEVHLHAPHAEQLEGF 208
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 12/124 (9%)
Query: 104 RTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI- 158
+D GCG + + V+ + + + + A G I +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAAGPDTGITYERADLD 99
Query: 159 KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP-PINWKTNYKAWQ 217
K+ +FD+A S + + + R V + L PGG++V S PI W
Sbjct: 100 KLHLPQDSFDLA-YSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWA 158
Query: 218 RPKE 221
E
Sbjct: 159 IDAE 162
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 30/153 (19%)
Query: 72 FRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAM 128
+ G D+ D++ +++ +++G LD GCG+ L + V +
Sbjct: 33 WEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTGI 90
Query: 129 SFAPRDSHEAQVQFALERGVPAVIGVLGTI--------KMPYASRAFDMAHC--SRCLIP 178
QV A R A G+ + +P+ +FD S +P
Sbjct: 91 -----SISRPQVNQANARATAA--GLANRVTFSYADAMDLPFEDASFDAVWALESLHHMP 143
Query: 179 WGANDGRYMIEVDRVLRPGGY-----WVLSGPP 206
+ GR + E+ RVLRPGG +VL P
Sbjct: 144 ---DRGRALREMARVLRPGGTVAIADFVLLAPV 173
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 83 QGADKYID-QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQ 139
G D Y + +L + + + LD GCG G YL + +V+ D
Sbjct: 29 AGNDIYGEARLIDAMAPRGAKI---LDAGCGQGRIGGYLSKQGHDVLGT-----DLDPIL 80
Query: 140 VQFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMI--EVDRVLRP 196
+ +A + P V+G + + FD+ + ++ + A DGR + R L
Sbjct: 81 IDYAKQD-FPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGA 139
Query: 197 GGYWVLS-GPPINW 209
G V+ G W
Sbjct: 140 DGRAVIGFGAGRGW 153
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 107 LDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI-KMPY 162
LD GCG L + + + +Q ERG + + G + +P+
Sbjct: 58 LDVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPF 112
Query: 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQR 218
+ F+ + W R + E+ RVL+ GY ++ K ++ R
Sbjct: 113 ENEQFEAIMA-INSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPR 167
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER 146
+L ++P N +T LD GCG Y V+ + D E + A +
Sbjct: 34 HELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRK 86
Query: 147 GVPAVIG-VLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204
V+ I + A+++ S + + A+ +V L+ G ++ S
Sbjct: 87 TTSPVVCYEQKAIEDIAIEPDAYNVV-LSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145
Query: 205 P-PINWKTNYKAWQR 218
P+ + W
Sbjct: 146 EHPVFTADGRQDWYT 160
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 26/162 (16%)
Query: 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP 149
L +++ + V LD GCG L R + + D V A G
Sbjct: 45 LLAILGRQPERV---LDLGCGEGWLLRALADRGIEAVGV-----DGDRTLVDAARAAGAG 96
Query: 150 AVIGVL---GTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP- 205
V + +D+ + L+ + + + +L PGG V+
Sbjct: 97 EVHLASYAQLAEAKVPVGKDYDLICANFALLH--QDIIELLSAMRTLLVPGGALVIQTLH 154
Query: 206 PINW----------KTNYKAWQRPKEELQEEQRKIEEIANLL 237
P + + ++ + + + R + N L
Sbjct: 155 PWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL 196
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 7e-06
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER 146
++ + +++ + G D G G + L ++ V A+ + Q A+
Sbjct: 23 VNAIINLLNLPKG--SVIADIGAGTGGYSVALANQGLFVYAV-----EPSIVMRQQAVVH 75
Query: 147 GVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGG----YWV 201
P V G + ++ D + ++ + E+ R++R G +
Sbjct: 76 --PQVEWFTGYAENLALPDKSVDGVISILAI-HHFSHLEKSFQEMQRIIRDGTIVLLTFD 132
Query: 202 LSGPPINWKTNY 213
+ W +Y
Sbjct: 133 IRLAQRIWLYDY 144
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-06
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHE 137
F + + + I GT +D G G + L + ++ A+ F+ +E
Sbjct: 25 FAPIYPIIAENIINRFGITAGTC---IDIGSGPGALSIALAKQSDFSIRALDFSK-HMNE 80
Query: 138 AQVQFALERGVPAVIG-VLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLR 195
++ + + I V G + +P D+ SR + + + E+ R+L+
Sbjct: 81 IALKNIADANLNDRIQIVQGDVHNIPIEDNYADLI-VSRGSVFFWEDVATAFREIYRILK 139
Query: 196 PGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241
GG + G N + + + + + + E+
Sbjct: 140 SGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVER 185
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 8e-06
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 11/131 (8%)
Query: 107 LDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMPY 162
LD G G ++ + + +A+ F+ E I G I K+P+
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE-NFSRENNFKLNI-SKGDIRKLPF 85
Query: 163 ASRAFDMAHCSRCLIPWGANDGRYMI-EVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKE 221
+ + + ND + I E+ RVL+PGG ++ T + + + ++
Sbjct: 86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN----FLTTKDERYNKGEK 141
Query: 222 ELQEEQRKIEE 232
+ E ++E
Sbjct: 142 IGEGEFLQLER 152
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 28/192 (14%)
Query: 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER 146
+ + +P + L+ GCG + + +V A D A R
Sbjct: 34 LTKFLGELP-AGAKI---LELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRR 84
Query: 147 -GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS- 203
G P + + A A+D CL+ ++ + + R L+PGG + S
Sbjct: 85 LGRPVRTMLFHQLD---AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY 141
Query: 204 --GPPINWKTNYKAWQRP-KEELQE--EQRKIEEIANLLCWEKKSEKGEIAVWQKKVNDE 258
G + + P +E L+ + + E K E+A +
Sbjct: 142 KSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFL------ 195
Query: 259 SCRARRDDSRAN 270
R+ + +
Sbjct: 196 HVSVRKPELEHH 207
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 28/183 (15%)
Query: 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFAL 144
+ ++ L K G V LD CGV + L V+ + D E ++ A
Sbjct: 26 ETLEPLLMKYMKKRGKV---LDLACGVGGFSFLLEDYGFEVVGV-----DISEDMIRKAR 77
Query: 145 ERGV---PAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGG- 198
E V ++G K+ + + FD ++ + + + EV RVL+P G
Sbjct: 78 EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGK 137
Query: 199 --------YWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAV 250
+L + K W QEE+ + E + E+ S + V
Sbjct: 138 FIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKS----EQDSFRVRFNV 193
Query: 251 WQK 253
W K
Sbjct: 194 WGK 196
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 22/145 (15%)
Query: 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER--G 147
+ +G + LD G G W +L S + + + V+ A +
Sbjct: 34 IEPWATGVDGVI---LDVGSGTGRWTGHLASLGHQIEGL-----EPATRLVELARQTHPS 85
Query: 148 VPAVIGVLGTIKMPYASRAFDMAHCSRCLI--PWGANDGRYMIEVDRVLRPGGYWVLS-- 203
V G + + + + + LI G ++ + + GG ++S
Sbjct: 86 VTFHHGTITD--LSDSPKRWAGLLAWYSLIHMGPGELP-DALVALRMAVEDGGGLLMSFF 142
Query: 204 ---GPPINWKTNYKAWQRPKEELQE 225
+ A++ P EL +
Sbjct: 143 SGPSLEPMYHPVATAYRWPLPELAQ 167
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)
Query: 92 LASVIPIKNGTVRTALDTGCGVASWGAYL--WSRNVIAMSFAPRDSHEAQVQFALERGVP 149
L ++ K G + +D GCG + YL ++ + + D + ++ E+
Sbjct: 10 LPNIFEGKKGVI---VDYGCGNGFYCKYLLEFATKLYCI-----DINVIALKEVKEK-FD 60
Query: 150 AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209
+VI + ++P S D + + + EV R+L+ G ++ I+W
Sbjct: 61 SVITLSDPKEIPDNS--VDFILFANSF-HDMDDKQHVISEVKRILKDDGRVII----IDW 113
Query: 210 KTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGE 247
+ P +E+ + +N EK+
Sbjct: 114 RKENTGIGPPLSIRMDEKDYMGWFSN-FVVEKRFNPTP 150
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 24/172 (13%)
Query: 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSF 130
F Q P + ++ + + + D GCG +L + +
Sbjct: 20 FKLLKRQGPGSPEATRKAVSFINELTDDA--KIADIGCGTGGQTLFLADYVKGQITGI-- 75
Query: 131 APRDSHEAQVQFALER----GVPA-VIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDG 184
D ++ E V G+ G++ +P+ + D+ + +
Sbjct: 76 ---DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI--YNIGFE 130
Query: 185 RYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANL 236
R M E + L+ GG+ +S +W T +RP E EI+ +
Sbjct: 131 RGMNEWSKYLKKGGFIAVSE--ASWFT----SERPAEIEDFWMDAYPEISVI 176
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 7/157 (4%)
Query: 73 RFPGGGTQFPQG-ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMS 129
+ T + QG A I L + G L GCG + S V+ +
Sbjct: 39 CWEEEITPWDQGRATPLIVHLVDTSSLPLGRA---LVPGCGGGHDVVAMASPERFVVGLD 95
Query: 130 FAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMI 188
+ +A + V + + FD+ +
Sbjct: 96 ISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAK 155
Query: 189 EVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQE 225
+ +L+P G + PI ++ +E
Sbjct: 156 SMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEE 192
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 12/139 (8%)
Query: 104 RTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMPY 162
+ L+ G G W L + + + A + R P V +P+
Sbjct: 38 ESLLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRA-PEATWVRAWGEALPF 91
Query: 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS--GPPINWKTNYKAWQRPK 220
+FD+ L + + R ++E RVLRPGG V+ W Y+
Sbjct: 92 PGESFDVVLLFTTL-EFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKG 150
Query: 221 EELQEEQR--KIEEIANLL 237
+ R E++ LL
Sbjct: 151 VLPWAQARFLAREDLKALL 169
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQV 140
A+ L G L+ GCG+ + L + ++ +P +A+
Sbjct: 22 AETLEKLLHHDTVYPPGA--KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAR- 78
Query: 141 QFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGY 199
+ + G+ V + I +P+ +FD ++ + + + +VL+PGG
Sbjct: 79 ENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV-CFVLEHLQSPEEALKSLKKVLKPGGT 137
Query: 200 WVL 202
+
Sbjct: 138 ITV 140
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 8e-05
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 9/152 (5%)
Query: 96 IPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIG 153
+PIK + L G + V A+ +APR E +I
Sbjct: 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL---DACAERENIIP 126
Query: 154 VLGTIKMPYASRAF-DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS--GPPINWK 210
+LG P + + + L+ GGY +++ I+
Sbjct: 127 ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT 186
Query: 211 TNYKA-WQRPKEELQEEQRKIEEIANLLCWEK 241
+ K ++ KE L+ KI + ++ +EK
Sbjct: 187 KDPKEIFKEQKEILEAGGFKIVDEVDIEPFEK 218
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)
Query: 73 RFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSF 130
RF + + ++ +A+ IP L G +L S V A+
Sbjct: 5 RFSQSEYVYGTEPNDFLVSVANQIPQG-----KILCLAEGEGRNACFLASLGYEVTAVDQ 59
Query: 131 APRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEV 190
+ +A+ Q A E+GV + A++ C +P + + +V
Sbjct: 60 SSVGLAKAK-QLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPS-SLRQQLYPKV 117
Query: 191 DRVLRPGGYWVLSG 204
+ L+PGG ++L G
Sbjct: 118 YQGLKPGGVFILEG 131
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 29/149 (19%)
Query: 72 FRFPGGGTQFPQGA----DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---N 124
++ P + + + + +LA ++ LD G G +L + +
Sbjct: 50 YKEPVDQDEIREASLRTDEWLASELAMTGVLQRQA--KGLDLGAGYGGAARFLVRKFGVS 107
Query: 125 VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--------KMPYASRAFDM--AHCSR 174
+ ++ AP Q + E A G+ I ++P ++D + +
Sbjct: 108 IDCLNIAPV-----QNKRNEEYNNQA--GLADNITVKYGSFLEIPCEDNSYDFIWSQDAF 160
Query: 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLS 203
P + + E RVL+P G ++
Sbjct: 161 LHSP---DKLKVFQECARVLKPRGVMAIT 186
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 23/118 (19%)
Query: 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALE 145
D+ L D GCG + + + V A D A
Sbjct: 56 DRIARDLRQRPASLV-----VADFGCGDCRLASSIRNP-VHCFDLASLDPRVTVCDMA-- 107
Query: 146 RGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203
++P + D+A CL G N ++ E +RVL+PGG ++
Sbjct: 108 -------------QVPLEDESVDVAVF--CLSLMGTNIRDFLEEANRVLKPGGLLKVA 150
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV 148
L+ + + + D GCG L V + F + A + G+
Sbjct: 38 LSFIDNLTEKS--LIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFN-RNARQSGL 94
Query: 149 PAVI-GVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206
+ G++G++ +P+ + D+ + + R + E + L+ GGY +S
Sbjct: 95 QNRVTGIVGSMDDLPFRNEELDLIWSEGAI--YNIGFERGLNEWRKYLKKGGYLAVS--E 150
Query: 207 INWKTNYKAWQRPKEELQE 225
+W T+ E+ +
Sbjct: 151 CSWFTD-----ERPAEIND 164
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 14/155 (9%)
Query: 96 IPIKNGTVRTALDTGCGVASWGAYL-----WSRNVIAMSFAPRDSHEAQVQFALERGVPA 150
+P+K G L G + +++ + + FAPR + + R
Sbjct: 73 LPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL---TVVRDRRN 127
Query: 151 VIGVLGTIKMPYASR-AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS--GPPI 207
+ +LG + P R + + + LR GGY +++ I
Sbjct: 128 IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI 187
Query: 208 NWKTNYKA-WQRPKEELQEEQRKIEEIANLLCWEK 241
+ T ++R + L + +I+++ +L +++
Sbjct: 188 DVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDR 222
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 17/161 (10%)
Query: 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL-WSRNVIAMSFAPRDSHEAQ 139
F Y+ +L +V + ++ G G G + + I + + E
Sbjct: 28 FLVHRFAYLSELQAVKCLLPE--GRGVEIGVGT---GRFAVPLKIKIGV-----EPSERM 77
Query: 140 VQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGY 199
+ A +RGV + G +P +FD A I + + R + E R+L+ GGY
Sbjct: 78 AEIARKRGVFVLKGTAE--NLPLKDESFDFA-LMVTTICFVDDPERALKEAYRILKKGGY 134
Query: 200 WVLSGP-PINWKTNYKAWQRPKEELQEEQRKI--EEIANLL 237
++ ++ + K + R EE+ +L+
Sbjct: 135 LIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLM 175
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 11/155 (7%)
Query: 58 EKAIQNWIQYEGNVFRFPGGGTQFP----QGADKYIDQLASVIPIKNGTVRTALDTGCGV 113
KA W Q V GG + K++ + P K GT LD G G+
Sbjct: 32 SKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCA-LDCGAGI 90
Query: 114 ASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KMPYASRAFDM 169
L V + +A+ E G + ++D+
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLG-EEGKRVRNYFCCGLQDFTPEPDSYDV 149
Query: 170 AHCSRCLIPWGANDG-RYMIEVDRVLRPGGYWVLS 203
+ ++ LRP G V+
Sbjct: 150 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK 184
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 15/135 (11%)
Query: 76 GGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAP 132
G G + ++ S I + + LD G G+ Y+ + + +
Sbjct: 32 GENYISSGGLEA-TKKILSDIELNENS--KVLDIGSGLGGGCMYINEKYGAHTHGI---- 84
Query: 133 RDSHEAQVQFALER--GVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGAND-GRYMI 188
D V A ER G +I I + FD+ + ++ + +
Sbjct: 85 -DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQ 143
Query: 189 EVDRVLRPGGYWVLS 203
+ + L+P G +++
Sbjct: 144 KCYKWLKPTGTLLIT 158
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 20/131 (15%)
Query: 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQ 139
P + L+ ++ L+ GCG A + A D
Sbjct: 32 PDPELTFDLWLSRLLT----PQTRVLEAGCGHGPDAARFGPQAARWAAY-----DFSPEL 82
Query: 140 VQFALERGVPAVIGVLGTI-KMPYASRA-FDMAHCSRCLIPWGANDGRYMIEVDRVLRPG 197
++ A A + ++P A F + R ++ + + P
Sbjct: 83 LKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR-------GPTSVILRLPELAAPD 135
Query: 198 GYWVLSGPPIN 208
+++ GP +N
Sbjct: 136 AHFLYVGPRLN 146
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 9/125 (7%)
Query: 82 PQGADKYIDQLAS-VIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEA 138
P+ A + +AS V P L+ G G L +R IA+
Sbjct: 20 PEVAGQIATAMASAVHPKGEE--PVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVF 77
Query: 139 QVQFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPG 197
+ + + V V +P + + + + E RVL+PG
Sbjct: 78 RQK--IAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW-HLVPDWPKVLAEAIRVLKPG 134
Query: 198 GYWVL 202
G +
Sbjct: 135 GALLE 139
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 19/180 (10%)
Query: 58 EKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWG 117
KA++ W V GG + + +P ALD G G+
Sbjct: 51 GKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGT--SRALDCGAGIGRIT 108
Query: 118 AYLWSR---NVIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KMPYASRAFDMAH 171
L ++ + + + ++ A G+P +L ++ +D+
Sbjct: 109 KNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV 163
Query: 172 CSRCLIPWGAND-GRYMIEVDRVLRPGGY-----WVLSGPPINWKTNYKAWQRPKEELQE 225
I D ++ + L P GY +G + R +
Sbjct: 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR 223
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 11/120 (9%)
Query: 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQ 139
+ + LD G G A +S I + A
Sbjct: 6 HHHSL--GLMIKTAECRAE--HRVLDIGAGAGHT-ALAFSPYVQECIGVDATKEMVEVAS 60
Query: 140 VQFALERGVPAVIGVLGTI-KMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGG 198
FA E+GV V GT +P+ +FD+ C + ++ + + EV RVL+ G
Sbjct: 61 -SFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF-SDVRKAVREVARVLKQDG 118
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 506 | |||
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.62 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.59 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.57 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.55 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.54 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.54 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.54 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.54 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.53 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.53 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.53 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.53 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.52 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.52 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.52 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.52 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.52 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.51 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.51 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.51 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.51 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.5 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.5 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.5 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.5 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.49 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.49 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.49 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.49 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.49 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.49 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.49 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.49 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.49 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.49 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.48 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.48 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.48 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.48 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.48 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.47 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.47 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.47 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.47 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.47 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.47 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.47 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.47 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.46 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.46 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.46 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.46 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.46 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.46 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.46 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.46 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.45 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.45 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.45 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.45 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.45 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.44 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.44 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.44 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.44 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.44 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.44 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.44 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.43 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.43 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.43 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.43 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.42 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.42 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.42 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.42 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.42 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.42 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.42 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.41 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.41 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.41 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.41 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.41 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.41 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.41 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.41 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.41 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.41 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.4 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.4 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.4 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.4 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.39 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.39 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.39 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.39 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.39 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.39 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.39 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.39 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.39 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.39 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.38 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.38 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.38 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.38 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.38 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.38 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.38 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.38 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.38 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.38 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.38 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.38 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.37 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.37 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.37 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.37 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.37 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.37 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.37 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.36 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.36 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.36 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.36 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.35 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.35 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.35 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.35 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.35 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.34 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.34 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.34 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.34 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.34 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.33 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.33 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.33 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.33 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.32 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.32 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.32 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.32 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.32 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.32 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.31 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.31 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.31 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.31 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.31 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.31 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.31 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.3 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.3 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.3 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.3 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.3 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.3 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.3 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.3 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.3 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.29 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.29 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.29 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.29 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.29 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.29 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.28 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.28 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.28 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.28 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.28 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.28 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.28 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.28 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.28 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.27 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.27 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.27 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.26 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.26 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.26 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.26 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.26 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.26 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.26 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.26 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.25 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.25 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.25 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.25 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.25 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.25 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.24 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.24 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.24 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.23 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.23 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.23 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.23 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.23 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.22 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.22 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.22 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.22 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.22 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.22 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.21 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.21 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.21 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.21 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.21 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.21 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.2 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.2 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.2 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.19 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.19 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.19 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.18 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.18 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.18 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.18 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.17 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.17 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.17 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.17 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.17 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.17 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.17 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.17 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.17 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.17 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.17 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.16 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.16 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.16 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.16 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.15 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.15 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.15 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.15 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.15 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.14 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.14 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.14 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.14 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.14 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.14 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.13 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.13 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.13 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.13 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.12 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.12 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.12 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.12 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.12 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.12 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.12 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.11 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.11 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.11 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.11 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.11 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.11 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.1 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.1 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.1 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.1 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.1 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.1 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.1 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.09 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.09 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.09 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.09 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.08 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.08 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.08 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.08 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.08 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.08 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.08 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.08 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.07 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.07 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.07 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.07 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.07 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.07 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.07 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.06 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.06 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.06 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.06 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.06 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.06 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.05 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.05 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.05 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.05 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.05 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.05 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.04 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.04 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.04 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.04 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.04 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.03 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.03 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.03 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.03 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.03 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.02 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.02 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.02 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.01 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.01 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.01 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.01 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.01 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.0 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.0 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.99 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.99 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.99 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.99 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.99 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.99 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.99 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.99 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.99 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.98 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.98 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.97 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.97 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.97 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.97 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.96 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.96 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.96 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.96 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.96 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.96 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.96 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.95 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.95 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.95 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.95 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.94 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.94 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.93 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.93 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.93 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.93 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.93 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.93 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.92 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.92 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.92 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.92 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.92 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.92 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.92 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.91 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.91 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.9 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.9 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.9 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.9 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.9 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.89 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.89 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.89 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.89 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.88 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.88 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.88 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.88 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.87 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.87 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.87 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.86 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.86 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.85 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.85 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.85 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.85 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.84 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.83 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.82 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.82 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.82 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.82 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.82 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.82 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.82 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.82 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.81 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.81 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.81 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.8 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.8 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.8 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.8 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.79 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.79 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.79 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.79 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.79 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.79 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.79 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.78 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.77 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.77 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.77 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.77 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.77 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.76 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.75 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.75 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.75 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.74 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.74 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.74 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.73 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.73 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.73 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.72 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.72 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.72 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.72 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.71 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.71 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.71 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.7 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.7 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.69 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.69 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.69 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.69 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.68 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.68 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.68 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.67 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.67 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.66 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.66 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.66 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.66 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.66 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.65 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.65 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.64 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.64 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.64 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.64 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.64 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.64 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.63 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.63 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.63 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.63 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.62 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.62 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.61 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.61 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.6 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.6 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.59 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.58 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.58 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.58 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.57 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.54 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.53 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.53 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.52 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.51 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.49 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.49 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.44 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.44 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.44 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.42 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.41 |
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=140.62 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=104.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC---CCCC-CceeEEEEccccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF---STYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~---~~~p-~s~D~v~~~~~~~ 426 (506)
....+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.+++.......-.+.+ +..+ .+||+|++..+|.
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 344789999999999999999875 48999999999999999985433332222333 3344 5699999988887
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeChh--------------------------------hHHHHHHHHhcCCceE
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------------------EIIKVKKIVGGMRWDT 474 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--------------------------------~~~~~~~~~~~~~w~~ 474 (506)
..++..+|.++.|+|||||+++|.+... ..+++.+++++.++++
T Consensus 128 ----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 203 (227)
T 3e8s_A 128 ----HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRL 203 (227)
T ss_dssp ----SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEE
T ss_pred ----hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeE
Confidence 4577899999999999999999976411 4688999999999997
Q ss_pred EEeecCCCC---CCCeEEEEEEec
Q 010599 475 KMVDHEDGP---LVPEKILVAVKQ 495 (506)
Q Consensus 475 ~~~~~~~~~---~~~~~~l~~~k~ 495 (506)
..+....-+ .....+++++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 204 VSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEEECCCCTTCSSCSCEEEEEEEC
T ss_pred EEEecCCCCCCCCceeEEEEeecC
Confidence 755432111 123678888874
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=140.51 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=105.9
Q ss_pred HHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--Ccee
Q 010599 340 AYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYD 417 (506)
Q Consensus 340 ~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--~s~D 417 (506)
.|..++..+...+..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. ..+...+.++..++ ++||
T Consensus 33 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~~~fD 108 (220)
T 3hnr_A 33 HYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVPTSID 108 (220)
T ss_dssp THHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSC-TTCCEESCCSSSCCCCSCCS
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCC-CceEEEeCChhhcCCCCCeE
Confidence 34444443333356689999999999999999875 589999999999999998742 11222233433333 8999
Q ss_pred EEEEccccccccCCCCHHH--HHHHHhhcccCCcEEEEEeChh-------------------------------hHHHHH
Q 010599 418 LIHAHGLFSLYKDKCNIED--ILLEMDRILRPEGAIIIRDEVD-------------------------------EIIKVK 464 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~--~l~e~~RvLrPgG~~ii~d~~~-------------------------------~~~~~~ 464 (506)
+|++..+|++.. +... +|.++.|+|||||.++|.+... ..++++
T Consensus 109 ~v~~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (220)
T 3hnr_A 109 TIVSTYAFHHLT---DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ 185 (220)
T ss_dssp EEEEESCGGGSC---HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred EEEECcchhcCC---hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence 999999998554 4444 9999999999999999986320 237888
Q ss_pred HHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 465 KIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 465 ~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++++.++++...... .-..++.++|+
T Consensus 186 ~~l~~aGf~v~~~~~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 186 TIFENNGFHVTFTRLN----HFVWVMEATKQ 212 (220)
T ss_dssp HHHHHTTEEEEEEECS----SSEEEEEEEEC
T ss_pred HHHHHCCCEEEEeecc----ceEEEEeehhh
Confidence 9999999997765554 24566666665
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=135.15 Aligned_cols=137 Identities=11% Similarity=0.136 Sum_probs=105.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccccCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. +.....-.+.++..+++||+|++..+|.++. .
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~ 117 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG-P 117 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC-T
T ss_pred CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC-H
Confidence 4569999999999999999875 489999999999999998742 1222211233443458999999999998764 4
Q ss_pred CCHHHHHHHHhhcccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 432 CNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
.++..+|.++.|+|||||+++|.+... ..+++++++.+.+|++.......+ .+...|...|+
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~~ 195 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEAS 195 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhhh
Confidence 578999999999999999999976322 368899999999999886665544 35666665553
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-15 Score=143.32 Aligned_cols=103 Identities=7% Similarity=0.083 Sum_probs=81.5
Q ss_pred CceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++..|++.. ....+|+++|.|+.||+.|+++ +....+...+.++..+| ..||+|.++.+++
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 4579999999999999998642 2235899999999999999886 33334445567777777 8899999998887
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++. ..+...+|.|++|+|||||.|+|.|.
T Consensus 151 ~~~-~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 151 FLE-PSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecC-chhHhHHHHHHHHHcCCCcEEEEEec
Confidence 654 22445799999999999999999764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=140.23 Aligned_cols=136 Identities=8% Similarity=0.085 Sum_probs=104.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEcc-cccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHG-LFSLYK 429 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~D~v~~~~-~~~~~~ 429 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++.. .+...+.++..+ +++||+|+|.. +|.++.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC--CCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 4689999999999999999875 479999999999999998742 111222333333 59999999997 999776
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEeC-----------------------------------------------------
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRDE----------------------------------------------------- 456 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~----------------------------------------------------- 456 (506)
+..++..+|.++.|+|||||+|+|.+.
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 556778899999999999999999420
Q ss_pred --------hhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEecc
Q 010599 457 --------VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 457 --------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
.-..+++++++++.++++..+.... ....+++|+|+-
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~---~~~~~~va~K~a 250 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGGP---SGRGLFTGLPGA 250 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTT---TSSCEEEEEECC
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCC---CCceeEEEecCC
Confidence 0026899999999999977654332 345688999973
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-15 Score=145.47 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=78.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~ 432 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++.-+...+.-.++++..+++||+|.|..+|+ +.
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h----~~ 112 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMH----WF 112 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCT----TC
T ss_pred CCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehh----Hh
Confidence 3579999999999999999876 4799999999999988766433444334466665569999999988885 44
Q ss_pred CHHHHHHHHhhcccCCcEEEEEe
Q 010599 433 NIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.+.++.|+.|||||||.|++.+
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEEE
Confidence 68899999999999999998853
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=135.63 Aligned_cols=145 Identities=14% Similarity=0.017 Sum_probs=106.1
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceecccccc---CCCCCCce
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEA---FSTYPRTY 416 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~---~~~~p~s~ 416 (506)
++..+......+|||+|||+|.++..|++.......|+++|.++.|++.+.++. +. .+...+.+ ++..+++|
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~f 107 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTV 107 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCE
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCe
Confidence 333344445668999999999999999875312258999999999999888762 21 12222233 33334899
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-------------hHHHHHHHHhcCCceEEEeecCCCC
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------------EIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
|+|+++.+|.+. .++..+|.++.|+|||||.++|.+... ..+++..++++.+|++.......
T Consensus 108 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-- 182 (219)
T 3dh0_A 108 DFIFMAFTFHEL---SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG-- 182 (219)
T ss_dssp EEEEEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET--
T ss_pred eEEEeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC--
Confidence 999999999855 477899999999999999999976321 36889999999999966443321
Q ss_pred CCCeEEEEEEec
Q 010599 484 LVPEKILVAVKQ 495 (506)
Q Consensus 484 ~~~~~~l~~~k~ 495 (506)
....+++++|+
T Consensus 183 -~~~~~~~~~k~ 193 (219)
T 3dh0_A 183 -KYCFGVYAMIV 193 (219)
T ss_dssp -TTEEEEEEECC
T ss_pred -CceEEEEEEec
Confidence 25778888885
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=128.74 Aligned_cols=134 Identities=15% Similarity=0.080 Sum_probs=102.1
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccC
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
.+..+|||+|||+|.++..|++.. .+|+++|.++.+++.+.++. ..+...+.+++..+++||+|++..++.+.
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~--~~v~~~~~d~~~~~~~~D~v~~~~~l~~~-- 88 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF--DSVITLSDPKEIPDNSVDFILFANSFHDM-- 88 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC--TTSEEESSGGGSCTTCEEEEEEESCSTTC--
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC--CCcEEEeCCCCCCCCceEEEEEccchhcc--
Confidence 445689999999999999999875 39999999999999999872 22222234444445899999999999855
Q ss_pred CCCHHHHHHHHhhcccCCcEEEEEeChh-------------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEeccc
Q 010599 431 KCNIEDILLEMDRILRPEGAIIIRDEVD-------------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQYW 497 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~w 497 (506)
.++..+|.++.|+|||||+++|.+... ..++++++++ +|++....... ...+.++++|+==
T Consensus 89 -~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~---~~~~~l~~~~~~~ 162 (170)
T 3i9f_A 89 -DDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT---PYHFGLVLKRKTS 162 (170)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS---TTEEEEEEEECCC
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC---CceEEEEEecCCC
Confidence 478899999999999999999975321 3567888888 99866443331 2567788877543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-14 Score=136.77 Aligned_cols=159 Identities=20% Similarity=0.345 Sum_probs=115.3
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChhhHHHHHHHH
Q 010599 13 RHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQL 92 (506)
Q Consensus 13 ~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~i 92 (506)
.+|+. .|+++.+..||...++..... ...+.+...+..++..++. ...+..-...+.+.+
T Consensus 19 ~~C~~----~~~~~~~~~Gy~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 78 (269)
T 1p91_A 19 YICPQ----RHQFDMAKEGYVNLLPVQHKR-----SRDPGDSAEMMQARRAFLD-----------AGHYQPLRDAIVAQL 78 (269)
T ss_dssp EECTT----CCEEEBCTTSCEECSCSSSSC-----SCCCSSSHHHHHHHHHHHT-----------TTTTHHHHHHHHHHH
T ss_pred EECCC----CCcCCcCCCEEEEeecccccC-----CCCCCCCHHHHHHHHHHHh-----------CCCcHHHHHHHHHHH
Confidence 47875 688999999999988765543 2334556667776666665 122333334454555
Q ss_pred HhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 010599 93 ASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 93 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD 168 (506)
...++ .++.+|||||||+|.++..+++. .++++|+++ .+++.+.++...+.+.+.+...+|+++++||
T Consensus 79 ~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD 150 (269)
T 1p91_A 79 RERLD---DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMD 150 (269)
T ss_dssp HHHSC---TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEE
T ss_pred HHhcC---CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCH-----HHHHHHHHhCCCcEEEEcchhhCCCCCCcee
Confidence 55442 23458999999999999999876 377787765 4455566666667888889889999899999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+|+++.+. .+++++.++|||||.+++.++..
T Consensus 151 ~v~~~~~~--------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 151 AIIRIYAP--------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp EEEEESCC--------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEeCCh--------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 99997652 24899999999999999988655
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=138.65 Aligned_cols=111 Identities=19% Similarity=0.263 Sum_probs=87.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~s 166 (506)
+.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++..+.... ...+. .+.+.+.|...+|+++++
T Consensus 27 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~v~~~~~d~~~l~~~~~~ 103 (260)
T 1vl5_A 27 AKLMQIAALK--GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFI-EGNGHQQVEYVQGDAEQMPFTDER 103 (260)
T ss_dssp HHHHHHHTCC--SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhCCC--CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HhcCCCceEEEEecHHhCCCCCCC
Confidence 3445555433 4559999999999999999887 4889999887775554333 33343 478888999999999999
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
||+|+|+.+++|+ +++..+|.++.|+|||||+|++..
T Consensus 104 fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 104 FHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp EEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEEhhhhHhc-CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999999999775 678999999999999999999974
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=140.42 Aligned_cols=108 Identities=23% Similarity=0.265 Sum_probs=86.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
..+++.|.+..+ ...+|||||||+|.++..|++++ |+++|+|+.|+ +.|.+ ...+.+.+.+++.+|++
T Consensus 27 ~~l~~~l~~~~~----~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml-----~~a~~-~~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 27 RALFRWLGEVAP----ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQI-----RQALR-HPRVTYAVAPAEDTGLP 96 (257)
T ss_dssp HHHHHHHHHHSS----CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHH-----HTCCC-CTTEEEEECCTTCCCCC
T ss_pred HHHHHHHHHhcC----CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhh-----hhhhh-cCCceeehhhhhhhccc
Confidence 445566666653 23489999999999999999874 78888876544 44433 35688899999999999
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++||+|+|..++ ||. ++..+++|+.|+|||||.|++...
T Consensus 97 ~~sfD~v~~~~~~-h~~-~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 97 PASVDVAIAAQAM-HWF-DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp SSCEEEEEECSCC-TTC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcccEEEEeeeh-hHh-hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 9999999999998 554 478899999999999999998753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=141.54 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..|+++ .++++|+|+.|+..+..+..... ..++.+.++|+..+|++ .||+|+++.
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~ 147 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 147 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeee
Confidence 4569999999999999999875 37899999887766554443322 23578888899888874 599999999
Q ss_pred cccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 175 CLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++++.+.. ..+|++++|+|||||.|+++.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 987754322 578999999999999999975
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-14 Score=133.43 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=104.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCC--CCCceeEEEEcc-ccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFST--YPRTYDLIHAHG-LFS 426 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~--~p~s~D~v~~~~-~~~ 426 (506)
+..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. .+ .+...+.++.. ++++||+|++.. +|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCcccc
Confidence 45689999999999999998875 479999999999999887621 00 11112233322 238999999998 999
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeCh-------------------------------------------------
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------------------------------- 457 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------------------------------- 457 (506)
|.....++..+|.++.|+|||||.+++....
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 7754457789999999999999999983110
Q ss_pred ---------hhHHHHHHHHhcCCceEEEeecC-----CCCCCCeEEEEEEec
Q 010599 458 ---------DEIIKVKKIVGGMRWDTKMVDHE-----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 458 ---------~~~~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~l~~~k~ 495 (506)
-..+++++++++.++++...... .+...+..+++|+|+
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 05688999999999997654322 122346789999985
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-14 Score=135.61 Aligned_cols=132 Identities=13% Similarity=0.172 Sum_probs=101.4
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCCCCCceeE
Q 010599 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDL 418 (506)
Q Consensus 342 ~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~~p~s~D~ 418 (506)
..+...+......+|||+|||+|.++..|++.+. .+|+++|.++.|++.|.++.. +.....-.+.++..+++||+
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3445555555667899999999999999998763 289999999999999998742 11221112344444489999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------------------------------------
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------------------------------- 458 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------------------------------- 458 (506)
|++..+|++. .++..+|.++.|+|||||.++|.....
T Consensus 112 v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (253)
T 3g5l_A 112 VLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGED 188 (253)
T ss_dssp EEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEE
T ss_pred EEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecccc
Confidence 9999999855 578999999999999999999963211
Q ss_pred ------hHHHHHHHHhcCCceEEEee
Q 010599 459 ------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 459 ------~~~~~~~~~~~~~w~~~~~~ 478 (506)
..+++.+++++.++++..+.
T Consensus 189 ~~~~~~t~~~~~~~l~~aGF~~~~~~ 214 (253)
T 3g5l_A 189 VQKYHRTVTTYIQTLLKNGFQINSVI 214 (253)
T ss_dssp EEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred CccEecCHHHHHHHHHHcCCeeeeee
Confidence 46889999999999976543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=134.55 Aligned_cols=155 Identities=8% Similarity=0.081 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC
Q 010599 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST 411 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~ 411 (506)
..|.........++.... .+..+|||+|||+|.++..|++.+. +|+++|.++.|++.|.++.. .+...+.++..
T Consensus 21 ~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~--~~~~~~~d~~~ 94 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLP--DATLHQGDMRD 94 (239)
T ss_dssp CCHHHHHHHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCT--TCEEEECCTTT
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCC--CCEEEECCHHH
Confidence 456655555544444222 3456899999999999999988642 89999999999999998741 11112233333
Q ss_pred C--CCceeEEEE-ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-------------------------------
Q 010599 412 Y--PRTYDLIHA-HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------------- 457 (506)
Q Consensus 412 ~--p~s~D~v~~-~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------------- 457 (506)
+ +++||+|+| ..+|++..+..++..+|.++.|+|||||.++|.+..
T Consensus 95 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (239)
T 3bxo_A 95 FRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVRE 174 (239)
T ss_dssp CCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecC
Confidence 2 589999996 448887665556789999999999999999996310
Q ss_pred ------------------------------hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 458 ------------------------------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 458 ------------------------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
-..++++.++.+.++++....... ....+++|+|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~---~~~~~~va~K~ 239 (239)
T 3bxo_A 175 GNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGP---SGRGLFVGVPA 239 (239)
T ss_dssp TTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTT---TSSCEEEEEEC
T ss_pred CCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCC---CCceEEEEecC
Confidence 024889999999999866553322 34678899985
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-14 Score=131.53 Aligned_cols=124 Identities=10% Similarity=0.145 Sum_probs=95.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC-C-CCceeEEEEcccccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-Y-PRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~-~-p~s~D~v~~~~~~~~~~ 429 (506)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.+++.. .+...+.++.. + +++||+|+++.+|++..
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLD-NVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCT-TEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCC-CeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 34589999999999999998874 4899999999999999987642 12222333333 2 39999999999998665
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------------------hhHHHHHHHHhcCCceEE
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRDEV----------------------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------------------~~~~~~~~~~~~~~w~~~ 475 (506)
+ ..+..+|.++.|+|||||.++|.+.. ...+++.+++++.+|++.
T Consensus 122 ~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 200 (218)
T 3ou2_A 122 D-DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCS 200 (218)
T ss_dssp H-HHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred H-HHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEE
Confidence 2 22578999999999999999997531 134789999999999977
Q ss_pred EeecC
Q 010599 476 MVDHE 480 (506)
Q Consensus 476 ~~~~~ 480 (506)
..+..
T Consensus 201 ~~~~~ 205 (218)
T 3ou2_A 201 VDEVH 205 (218)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 65544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=133.45 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=94.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-CccceeccccccCCCCCCceeEEEEccccccccCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-g~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ ++.....+ .+.++ .+++||+|+++.+|.+.. .
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~d-~~~~~-~~~~fD~v~~~~~l~~~~-~ 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRLGRPVRTML-FHQLD-AIDAYDAVWAHACLLHVP-R 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHTSCCEECC-GGGCC-CCSCEEEEEECSCGGGSC-H
T ss_pred CCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhcCCceEEee-eccCC-CCCcEEEEEecCchhhcC-H
Confidence 4589999999999999999875 4899999999999999988 33222211 23444 459999999999998654 3
Q ss_pred CCHHHHHHHHhhcccCCcEEEEEeCh---------------hhHHHHHHHHhcCC-ceEEEee
Q 010599 432 CNIEDILLEMDRILRPEGAIIIRDEV---------------DEIIKVKKIVGGMR-WDTKMVD 478 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~---------------~~~~~~~~~~~~~~-w~~~~~~ 478 (506)
.++..+|.++.|+|||||+++|.... -..+++++++++.+ |++....
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 36778999999999999999996432 15688999999999 9876443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-14 Score=136.72 Aligned_cols=128 Identities=14% Similarity=0.170 Sum_probs=93.9
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCcee
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYD 417 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~D 417 (506)
++..+......+|||+|||+|.++..|++.. ..|+++|.|+.|++.|.++ |+ +.....-.+.+++.+++||
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD 105 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH 105 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEE
Confidence 3333444456789999999999999998865 3899999999999998876 32 1111111233443348999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-------------------------hHHHHHHHHhcCCc
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------------------------EIIKVKKIVGGMRW 472 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------------------~~~~~~~~~~~~~w 472 (506)
+|++..+++++ .++..+|.|+.|+|||||+|+|.+... ..+++.+++.+.+|
T Consensus 106 ~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 182 (260)
T 1vl5_A 106 IVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGF 182 (260)
T ss_dssp EEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTC
T ss_pred EEEEhhhhHhc---CCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCC
Confidence 99999999855 478899999999999999999975311 23567777888888
Q ss_pred eEEEe
Q 010599 473 DTKMV 477 (506)
Q Consensus 473 ~~~~~ 477 (506)
++...
T Consensus 183 ~~~~~ 187 (260)
T 1vl5_A 183 ELEEL 187 (260)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 85543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-14 Score=132.22 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=98.4
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEEEcccccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~D~v~~~~~~~~ 427 (506)
+|||+|||+|.++..|++. ...+|+++|.++.|++.|.++ ++...+...+.+ ++..+++||+|++..++++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 8999999999999999886 247999999999999998887 322122222333 3333489999999999985
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeCh------------------------------hhHHHHHHHHhcCCceEEEe
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
. .++..+|.++.|+|||||.++|.+.. ...+++++++++.+++...+
T Consensus 124 ~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 124 W---EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp C---SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred c---cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 5 57889999999999999999997532 12377888999999975443
Q ss_pred ecCCCCCCCeEEEEEEec
Q 010599 478 DHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 478 ~~~~~~~~~~~~l~~~k~ 495 (506)
...+ ...+++.+|+
T Consensus 201 ~~~~----~~~~~~~~k~ 214 (219)
T 3dlc_A 201 ILGD----EGFWIIISKT 214 (219)
T ss_dssp EEET----TEEEEEEBCC
T ss_pred EecC----CceEEEEecc
Confidence 3321 3456666664
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-14 Score=135.61 Aligned_cols=124 Identities=9% Similarity=0.100 Sum_probs=92.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--------------cceeccccccCCCCC---
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--------------IGIYHDWCEAFSTYP--- 413 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--------------~~~~~~~~~~~~~~p--- 413 (506)
...+|||+|||+|.++..|++.+ .+|+++|.|+.|++.|+++. . ...+...+.++..++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 45689999999999999999875 48999999999999998872 1 122333455555554
Q ss_pred -CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEE-EE-eCh----------hhHHHHHHHHhcCCceEEEeecC
Q 010599 414 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII-IR-DEV----------DEIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 414 -~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~i-i~-d~~----------~~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
++||+|.+..+|.++. ..+...++.||.|+|||||+++ +. +.. -..++++.++.. +|++......
T Consensus 99 ~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 6899999988887654 3345679999999999999833 32 210 135788998888 9987655443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-14 Score=136.23 Aligned_cols=123 Identities=21% Similarity=0.422 Sum_probs=97.4
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEE
Q 010599 79 TQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIG 153 (506)
Q Consensus 79 ~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~ 153 (506)
..+........+.+.+.++.. ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+.
T Consensus 40 ~~~~~~~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~ 116 (273)
T 3bus_A 40 VSVDDATDRLTDEMIALLDVR--SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARA-TAAGLANRVTFS 116 (273)
T ss_dssp CCHHHHHHHHHHHHHHHSCCC--TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEE
T ss_pred cCHHHHHHHHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH-HhcCCCcceEEE
Confidence 345556677778888888654 3459999999999999999874 4889999887665444333 33343 47888
Q ss_pred EeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 154 VLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 154 ~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..|...+|+++++||+|++..+++|+ +++..+++++.++|||||++++..+
T Consensus 117 ~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 117 YADAMDLPFEDASFDAVWALESLHHM-PDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp ECCTTSCCSCTTCEEEEEEESCTTTS-SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ECccccCCCCCCCccEEEEechhhhC-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 88999999999999999999999775 6679999999999999999999763
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-14 Score=135.14 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=95.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-ceecccccc---CCCCCCceeEEEEc
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEA---FSTYPRTYDLIHAH 422 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~~~~~~~~~---~~~~p~s~D~v~~~ 422 (506)
.+...+..+|||+|||+|.++..|++.. ..+|+++|.++.|++.|.++... ..+...+.+ ++..+++||+|++.
T Consensus 50 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 127 (266)
T 3ujc_A 50 DIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSR 127 (266)
T ss_dssp TCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEE
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHH
Confidence 3344456689999999999999998852 25899999999999999988521 111122233 33334899999999
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEEE
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~~ 476 (506)
.+|+|.. ..++..+|.++.|+|||||+++|.+.. ...+.+.+++.+.++++..
T Consensus 128 ~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 128 DAILALS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 9999663 247788999999999999999997621 1356788889999998654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=139.82 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=100.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----cc---------------------------
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----LI--------------------------- 399 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----~~--------------------------- 399 (506)
+..+|||+|||+|.++..++..+ ..+|+++|.|+.|++.|.++. .+
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 45689999999998887777655 347999999999999887641 00
Q ss_pred -----ceeccccccCCC---CCCceeEEEEccccccc-cCCCCHHHHHHHHhhcccCCcEEEEEeChh------------
Q 010599 400 -----GIYHDWCEAFST---YPRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD------------ 458 (506)
Q Consensus 400 -----~~~~~~~~~~~~---~p~s~D~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------ 458 (506)
-...+..+..+. ...+||+|.|+.+|++. .+..++..+|.+|.|+|||||+|++++...
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 001111111121 13799999999999874 344567789999999999999999986221
Q ss_pred ----hHHHHHHHHhcCCceEEEeecCC-------CCCCCeEEEEEEec
Q 010599 459 ----EIIKVKKIVGGMRWDTKMVDHED-------GPLVPEKILVAVKQ 495 (506)
Q Consensus 459 ----~~~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~l~~~k~ 495 (506)
..+++.+++.+.++++....... .......+++|+|.
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 46789999999999876443211 01125678899995
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-14 Score=130.81 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=84.2
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
+.+|||||||+|.++..|++. .++++|+++. +++.++++...+.+.+.|...+++++++||+|++..+++|+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATR-----LVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHH-----HHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHH-----HHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC
Confidence 347999999999999999987 4788887654 445566656678888899999998899999999999998875
Q ss_pred C-ChHHHHHHHHHhcCCCeEEEEEcCCCC
Q 010599 181 A-NDGRYMIEVDRVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 181 ~-~~~~~l~e~~rvLkPGG~li~~~p~~~ 208 (506)
. +...+++++.++|||||+++++.+...
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 3 568999999999999999999875443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=131.55 Aligned_cols=143 Identities=14% Similarity=0.061 Sum_probs=101.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCC--CceeEEEEcccccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP--RTYDLIHAHGLFSL 427 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p--~s~D~v~~~~~~~~ 427 (506)
.+..+|||+|||+|.++..|++.. ...+|+++|.++.|++.|.++.. .+.+...+.++..++ ++||+|++..+|++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH 121 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence 345789999999999999998752 12589999999999999998732 112333344554444 89999999999986
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----------------------------------------hhHHHHHHH
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------------------------DEIIKVKKI 466 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------------------------~~~~~~~~~ 466 (506)
.. ......+|.++.|+|||||+++|.|.. ...+++.++
T Consensus 122 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 122 LE-DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp SC-HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 53 112336999999999999999997621 023567779
Q ss_pred HhcCCceEEEeecCCCCCCCeEEEEEEecccc
Q 010599 467 VGGMRWDTKMVDHEDGPLVPEKILVAVKQYWV 498 (506)
Q Consensus 467 ~~~~~w~~~~~~~~~~~~~~~~~l~~~k~~w~ 498 (506)
+++.+++........ -...++...|+=|.
T Consensus 201 l~~aGF~~v~~~~~~---~~~~~~~~~~~~~~ 229 (234)
T 3dtn_A 201 LKEAGFRDVSCIYKY---YQFAVMFGRKTEGH 229 (234)
T ss_dssp HHHTTCEEEEEEEEE---TTEEEEEEECC---
T ss_pred HHHcCCCceeeeeee---cceeEEEEEecccc
Confidence 999999966433332 24668888877664
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-14 Score=140.63 Aligned_cols=142 Identities=14% Similarity=0.098 Sum_probs=102.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCC--CCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~--p~s~D~v~~~~~~ 425 (506)
+..+|||+|||+|.++..|+.......+|+++|.++.|++.|.++. +...+...+.++..+ +++||+|+++.++
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 197 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLN 197 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSSG
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECChh
Confidence 3567999999999999998522222368999999999999998763 211122223333332 3999999999999
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeCh---------------------------------------hhHHHHHHH
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------------------------DEIIKVKKI 466 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------------------------~~~~~~~~~ 466 (506)
.+.........+|.++.|+|||||+++|.+.. ...+++.++
T Consensus 198 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (305)
T 3ocj_A 198 IYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQ 277 (305)
T ss_dssp GGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHH
Confidence 86654433445899999999999999998721 136789999
Q ss_pred HhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 467 VGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 467 ~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++.+|++...... .......++++|+
T Consensus 278 l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 278 LEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp HHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred HHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 99999997655432 2235668888885
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=135.08 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=99.2
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCce
Q 010599 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTY 416 (506)
Q Consensus 342 ~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~ 416 (506)
..++..+...+..+|||+|||+|.++..|++ .+ .+|+++|.|++|++.|.++ |+...+...+.++..+|++|
T Consensus 54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 3444445555567899999999999999984 33 3899999999999999886 33222333334454556999
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-----------------------------------hHH
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----------------------------------EII 461 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----------------------------------~~~ 461 (506)
|+|++..+|+|.. ..++..+|.++.|+|||||.++|.+... ..+
T Consensus 131 D~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 131 DRIVSIGAFEHFG-HERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp SEEEEESCGGGTC-TTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eEEEEeCchhhcC-hHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 9999999999764 2577899999999999999999965321 356
Q ss_pred HHHHHHhcCCceEEEe
Q 010599 462 KVKKIVGGMRWDTKMV 477 (506)
Q Consensus 462 ~~~~~~~~~~w~~~~~ 477 (506)
++.+++++.++++...
T Consensus 210 ~~~~~l~~aGf~~~~~ 225 (287)
T 1kpg_A 210 MVQECASANGFTVTRV 225 (287)
T ss_dssp HHHHHHHTTTCEEEEE
T ss_pred HHHHHHHhCCcEEEEE
Confidence 7788888899986543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-14 Score=154.43 Aligned_cols=124 Identities=12% Similarity=0.110 Sum_probs=82.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceecccccc----CCCCCCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEA----FSTYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~----~~~~p~s~D~v~~~~ 423 (506)
..+|||+|||||+|+.+++..+. ..|+++|.|+.+++.|.+. |+. ..+...+.+ ++...++||+|.++-
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 45799999999999999887653 4699999999999988875 332 112222222 222347999999854
Q ss_pred c-ccccc-------CCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEee
Q 010599 424 L-FSLYK-------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 424 ~-~~~~~-------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
- |.... ...+...++.++.++|||||+|+++........-.+.+.+.+++...+.
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i~ 680 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEIT 680 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEECT
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeeee
Confidence 2 21100 1113456899999999999999997765322222455666777755443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=127.34 Aligned_cols=121 Identities=14% Similarity=0.207 Sum_probs=90.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCceeEEEEccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~D~v~~~~~ 424 (506)
.+..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ ++ +.....-...++. +++||+|++..+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~ 106 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVV 106 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESC
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcch
Confidence 345689999999999999999875 4899999999999988775 22 1111111123333 689999999999
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--------------hhHHHHHHHHhcCCceEEEee
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------~~~~~~~~~~~~~~w~~~~~~ 478 (506)
|++.. ..++..+|.++.|+|||||+++|.+.. -..+++++++.. |++....
T Consensus 107 l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 107 LMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 98654 346788999999999999998885421 145788888887 8866543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=129.96 Aligned_cols=142 Identities=11% Similarity=0.107 Sum_probs=102.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccc----eeccccccCCCCC---CceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIG----IYHDWCEAFSTYP---RTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~----~~~~~~~~~~~~p---~s~D~v~ 420 (506)
+..+|||+|||+|.++..|++.+ ...+|+++|.++.|++.|.++- +.. .+...+.++...+ ++||+|.
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 45689999999999999998864 2358999999999999998862 100 2222334444443 7999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------------------hHHHHH----HHHhcCCceE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------------EIIKVK----KIVGGMRWDT 474 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------------~~~~~~----~~~~~~~w~~ 474 (506)
|..+|+++. ..++..+|.++.|+|||||.+++....+ ..++++ .++...++++
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 999999663 2234689999999999999887754322 223444 8889999998
Q ss_pred EEeecCCC---CCCCeEEEEEEec
Q 010599 475 KMVDHEDG---PLVPEKILVAVKQ 495 (506)
Q Consensus 475 ~~~~~~~~---~~~~~~~l~~~k~ 495 (506)
......++ -..+..+.+++|.
T Consensus 187 ~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 187 RFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEecCCccccCCCCeEEEEEecc
Confidence 86644322 2246788888885
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=146.74 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=111.8
Q ss_pred hhhhhhhhHHHHHHHHH-HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceec--
Q 010599 327 YQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH-- 403 (506)
Q Consensus 327 f~~~~~~W~~~v~~y~~-~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~-- 403 (506)
+......|..+...+.. ++..+......+|||+|||+|.++..|++.+ .+|+++|.|++|++.|.++++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~~~~~~~~~~ 157 (416)
T 4e2x_A 81 HSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREKGIRVRTDFF 157 (416)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTTTCCEECSCC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHcCCCcceeee
Confidence 44556678777766543 4445555556789999999999999999876 38999999999999999997533221
Q ss_pred --cccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--------------------hhHH
Q 010599 404 --DWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------------DEII 461 (506)
Q Consensus 404 --~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------------~~~~ 461 (506)
+..+.++..+++||+|++.++|+|.. ++..+|.++.|+|||||+++|.+.. -..+
T Consensus 158 ~~~~~~~l~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 234 (416)
T 4e2x_A 158 EKATADDVRRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSAT 234 (416)
T ss_dssp SHHHHHHHHHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHH
T ss_pred chhhHhhcccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHH
Confidence 11222332348999999999999664 7899999999999999999997532 0347
Q ss_pred HHHHHHhcCCceEEEeec
Q 010599 462 KVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 462 ~~~~~~~~~~w~~~~~~~ 479 (506)
.++.++.+.++++.....
T Consensus 235 ~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 235 SVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEEEE
Confidence 899999999999765444
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=132.90 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=91.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+. +|+++|.++.|++.|.++.. +.....-.+.+ ..+++||+|++.++|+|..
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~- 117 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID- 117 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS-
T ss_pred CCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc-
Confidence 35799999999999999998753 79999999999999998742 12222112233 2348999999999999654
Q ss_pred CCCHHHHHHHHh-hcccCCcEEEEEeChh---------------------------------hHHHHHHHHhcCCceEEE
Q 010599 431 KCNIEDILLEMD-RILRPEGAIIIRDEVD---------------------------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 431 ~~~~~~~l~e~~-RvLrPgG~~ii~d~~~---------------------------------~~~~~~~~~~~~~w~~~~ 476 (506)
++..+|.|+. |+|||||+++|.+... ..++++++++..+|++..
T Consensus 118 --~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 118 --DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp --SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred --CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 6789999999 9999999999976321 346788889999998664
Q ss_pred e
Q 010599 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
.
T Consensus 196 ~ 196 (250)
T 2p7i_A 196 R 196 (250)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=133.90 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHH------------cCCCeEEEEeccccCCCCC-CC
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALE------------RGVPAVIGVLGTIKMPYAS-RA 166 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~------------~~~~~~~~~~d~~~lp~~~-~s 166 (506)
++.+|||+|||+|.++..|++++ |+++|+|+.++..+..+.... ....+.+.++|+..+++++ ++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~ 101 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 101 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence 34589999999999999999875 888999887775544332110 1346788899999998775 79
Q ss_pred eeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010599 167 FDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
||+|++..+++|+.... ..+++++.|+|||||++++.
T Consensus 102 fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 102 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999988887765322 57899999999999984443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=130.90 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=96.6
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc---ceeccccccCCCCCCceeEEEEcc
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI---GIYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~---~~~~~~~~~~~~~p~s~D~v~~~~ 423 (506)
.+......+|||+|||+|.++..|++.+. .+|+++|.++.|++.|.++... .....-.+.++..+++||+|++..
T Consensus 38 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 115 (243)
T 3bkw_A 38 MLPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSL 115 (243)
T ss_dssp HSCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEES
T ss_pred hccccCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEec
Confidence 34444567899999999999999998752 2899999999999999988531 122111233443348999999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---------------------------------------------
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------------------------------- 458 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--------------------------------------------- 458 (506)
+|++. .++..+|.++.|+|||||+++|.+...
T Consensus 116 ~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (243)
T 3bkw_A 116 ALHYV---EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHR 192 (243)
T ss_dssp CGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEEC
T ss_pred ccccc---chHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEec
Confidence 99855 478899999999999999999965210
Q ss_pred hHHHHHHHHhcCCceEEEee
Q 010599 459 EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 459 ~~~~~~~~~~~~~w~~~~~~ 478 (506)
..+++.+++.+.++++....
T Consensus 193 t~~~~~~~l~~aGF~~~~~~ 212 (243)
T 3bkw_A 193 TVGTTLNALIRSGFAIEHVE 212 (243)
T ss_dssp CHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHcCCEeeeec
Confidence 35788899999999976443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=136.81 Aligned_cols=123 Identities=16% Similarity=0.313 Sum_probs=96.5
Q ss_pred CCChhhHHHHHHHHHhhC----CCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--C
Q 010599 79 TQFPQGADKYIDQLASVI----PIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--P 149 (506)
Q Consensus 79 ~~f~~~~~~~~~~i~~~l----~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~ 149 (506)
..+........+.+.+.+ ... ++.+|||||||+|.++..|++. .++++|+++.++..+..... ..+. .
T Consensus 57 ~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~ 133 (297)
T 2o57_A 57 DEIREASLRTDEWLASELAMTGVLQ--RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNN-QAGLADN 133 (297)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HHTCTTT
T ss_pred cchHHHHHHHHHHHHHHhhhccCCC--CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-hcCCCcc
Confidence 344455566667777776 433 3459999999999999999875 48899998876655544333 2333 4
Q ss_pred eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 150 AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 150 ~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.+...|...+|+++++||+|++..+++|+ +++..+++++.|+|||||+|++..+
T Consensus 134 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 134 ITVKYGSFLEIPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp EEEEECCTTSCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEcCcccCCCCCCCEeEEEecchhhhc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 788888999999999999999999999886 4589999999999999999999864
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-14 Score=134.76 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=100.2
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----cceeccccccCCCCCCceeE
Q 010599 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYPRTYDL 418 (506)
Q Consensus 343 ~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~~~~~~~~~~~~~~p~s~D~ 418 (506)
.++..+......+|||+|||+|.++..|++.+ ..+|+++|.++.|++.|.++.. +.....-.+.++..+++||+
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence 34444554556789999999999999998754 2479999999999999998742 12222112334433489999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------------hhHHHHHHHHhcCCceEEEeec
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
|++..+|+++.. .++..+|.++.|+|||||+++|.+.. ...+++++++++.+|++.....
T Consensus 162 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 162 IVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 999999986642 35788999999999999999998741 1348899999999999765443
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=132.64 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=93.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc---CCCCCCceeEEEEcccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA---FSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~---~~~~p~s~D~v~~~~~~~~~~ 429 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.....+...+.+ ++..+++||+|++.++|+|.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 129 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT- 129 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS-
T ss_pred CCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc-
Confidence 4589999999999999999975 4899999999999999988432222222333 34334899999999999854
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEEEe
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
.++..+|.++.|+|||||+++|.+.. -...++++++.+.+|++...
T Consensus 130 --~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 --EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp --SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 57789999999999999999997621 12357899999999996643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=127.71 Aligned_cols=107 Identities=15% Similarity=0.229 Sum_probs=84.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCC--CCceeEEEEcc
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTY--PRTYDLIHAHG 423 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~--p~s~D~v~~~~ 423 (506)
.+...+..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++.. .+.+...+.++..+ +++||+|+++.
T Consensus 46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~ 122 (216)
T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAE 122 (216)
T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEES
T ss_pred HcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEcc
Confidence 4455566789999999999999998864 689999999999999998742 11223333444443 38999999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|+|..+...+..+|.++.|+|||||.++|.+.
T Consensus 123 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 123 VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 999776544556889999999999999999764
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=136.35 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=87.0
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCc
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRT 415 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s 415 (506)
...++..+...+..+|||+|||+|.++..|++. + .+|+++|.|++|++.|.++ |+...+...+.++..++++
T Consensus 61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 137 (302)
T 3hem_A 61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 137 (302)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCC
Confidence 344445455555678999999999999999886 4 5899999999999999877 3322333334444445899
Q ss_pred eeEEEEccccccccCC------CCHHHHHHHHhhcccCCcEEEEEe
Q 010599 416 YDLIHAHGLFSLYKDK------CNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~------~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
||+|++..+|+|..+. .+...+|.++.|+|||||+++|.+
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999977543 455789999999999999999965
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-13 Score=127.10 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=89.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~ 432 (506)
..+|||+|||+|.++..|... +++|.++.|++.+.++++. ....-.+.++..+++||+|++..+|.+. .
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~ 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFV---D 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGS---S
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCE-EEEcccccCCCCCCCeeEEEEcchHhhc---c
Confidence 468999999999999999874 8999999999999998532 2211123344334799999999999855 4
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeChh------------------------hHHHHHHHHhcCCceEEEe
Q 010599 433 NIEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
++..+|.++.|+|||||.++|.+... ..+++.+++.+.+|++...
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 77899999999999999999975321 4578899999999997643
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=133.21 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=92.3
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
......+.+.+. ...++.+|||||||+|.++..+++. .++++|+++.++..+.... ...++ .+.+.+.|...+
T Consensus 31 ~~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~ 108 (267)
T 3kkz_A 31 PEVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNA-RQSGLQNRVTGIVGSMDDL 108 (267)
T ss_dssp HHHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHH-HHcCCCcCcEEEEcChhhC
Confidence 445555666664 1234569999999999999999986 4899999887665544333 33443 388889999999
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+++++||+|+|..+++|+ ++..+++++.++|||||++++..+
T Consensus 109 ~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 109 PFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp CCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9989999999999999886 679999999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=133.13 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK 159 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~ 159 (506)
....++.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++..+... +...++ .+.+.+.|+..
T Consensus 21 ~~~~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 21 TEEKYATLGRVLRMK--PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRR-AEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp CHHHHHHHHHHTCCC--TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCCTT
T ss_pred CHHHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEECChHh
Confidence 355666777777543 3459999999999999999875 488999998777555433 334444 47888889988
Q ss_pred CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++ +++||+|+|..+++|+ +++..+|+++.|+|||||++++..+
T Consensus 98 ~~~-~~~fD~V~~~~~~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 98 YVA-NEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CCC-SSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCc-CCCCCEEEECCChHhc-CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 888 8899999999998775 4679999999999999999999764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=133.90 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=93.4
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeE
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDL 418 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~D~ 418 (506)
+..+...+..+|||+|||+|.++..|++.. ..+|+++|.|+.|++.|.++ |+...+...+.++... +++||+
T Consensus 29 ~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 106 (256)
T 1nkv_A 29 GRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDV 106 (256)
T ss_dssp HHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEE
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCE
Confidence 333444456789999999999999998742 24789999999999988775 3321222223333322 589999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
|+|..++.+.. ++..+|.|+.|+|||||+++|.+.. ....++.+++.+.+++..
T Consensus 107 V~~~~~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 182 (256)
T 1nkv_A 107 AACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 182 (256)
T ss_dssp EEEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred EEECCChHhcC---CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeE
Confidence 99988888544 6788999999999999999997632 123678889999999854
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=128.11 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~ 157 (506)
.......+.+.+.++.. ++ +|||||||+|.++..|++. .++++|+++.++..+..... ..+. .+.+.+.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~--~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~d~ 102 (219)
T 3dlc_A 27 PIYPIIAENIINRFGIT--AG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIA-DANLNDRIQIVQGDV 102 (219)
T ss_dssp THHHHHHHHHHHHHCCC--EE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEECBT
T ss_pred cccHHHHHHHHHhcCCC--CC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-hccccCceEEEEcCH
Confidence 33455556666666432 23 8999999999999999875 58899998876655544333 3333 578888999
Q ss_pred ccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 158 IKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..+++++++||+|++..+++|+ +++..+++++.++|||||++++..+.
T Consensus 103 ~~~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 103 HNIPIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp TBCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHCCCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 9999999999999999999886 67899999999999999999998643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=132.57 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=88.4
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc--CCCeEEEEeccccCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKMPY 162 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~--~~~~~~~~~d~~~lp~ 162 (506)
.+++.+.+.++ ++.+|||||||+|.++..+++.+ ++++|+++. +++.+.++ ...+.+.+.|...+++
T Consensus 42 ~~~~~l~~~~~----~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~d~~~~~~ 112 (242)
T 3l8d_A 42 TIIPFFEQYVK----KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEV-----MIQKGKERGEGPDLSFIKGDLSSLPF 112 (242)
T ss_dssp THHHHHHHHSC----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHTTTCBTTEEEEECBTTBCSS
T ss_pred HHHHHHHHHcC----CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHH-----HHHHHHhhcccCCceEEEcchhcCCC
Confidence 34455666553 34599999999999999999884 777877664 44445444 3567888899999999
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++++||+|+|..+++|+ +++..+++++.++|||||+++++.+..
T Consensus 113 ~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWT-EEPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp CTTCEEEEEEESCTTSS-SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCCccEEEEcChHhhc-cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 99999999999999885 678899999999999999999987433
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=129.90 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=101.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-c-------eeccccccCCC---CCCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-G-------IYHDWCEAFST---YPRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~-------~~~~~~~~~~~---~p~s~D~v~~ 421 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++... + .+...+.++.. .+++||+|.+
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 4589999999999999999875 4899999999999999885321 1 12222333333 3489999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----------------------------------------hhH
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------------------------DEI 460 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------------------------~~~ 460 (506)
..++.+..+......+|.++.|+|||||+++|.+.. -..
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE 187 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence 999986653333348999999999999999997531 146
Q ss_pred HHHHHHHhcCCceEEEee-----cCCCCCCCeEEEEEEe
Q 010599 461 IKVKKIVGGMRWDTKMVD-----HEDGPLVPEKILVAVK 494 (506)
Q Consensus 461 ~~~~~~~~~~~w~~~~~~-----~~~~~~~~~~~l~~~k 494 (506)
+++++++++.+|++..+. ..+|......++.+.+
T Consensus 188 ~~l~~ll~~aGf~~~~~~~~~~~~~~g~~~~~~~i~~~~ 226 (235)
T 3sm3_A 188 KELVFLLTDCRFEIDYFRVKELETRTGNKILGFVIIAQK 226 (235)
T ss_dssp HHHHHHHHTTTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEecceeeccCCccceEEEeeHH
Confidence 789999999999977443 2244444455555544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=128.89 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=87.6
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010599 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+...........+.+...|...+++++++
T Consensus 29 ~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 29 VLKEFGLK--EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHTCC--TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred HHHHhCCC--CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence 44444333 3459999999999999988764 4889999887776555444443323588888899999999999
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
||+|+++.+++|+ +++..+++++.++|||||++++..
T Consensus 107 fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 107 VDFIFMAFTFHEL-SEPLKFLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp EEEEEEESCGGGC-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEeehhhhhc-CCHHHHHHHHHHHhCCCeEEEEEE
Confidence 9999999999876 567999999999999999999975
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-13 Score=124.90 Aligned_cols=150 Identities=16% Similarity=0.115 Sum_probs=106.9
Q ss_pred hhhhhhhhhhhHHHHHHHHH------------HhhhcC-CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH
Q 010599 324 AESYQEDSNKWKKHVNAYKK------------INRLLD-SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL 390 (506)
Q Consensus 324 ~~~f~~~~~~W~~~v~~y~~------------~~~~i~-~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l 390 (506)
.+.|..+...|+.....|.. ++..+. .....+|||+|||+|.++..|. .+|+++|.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~-- 97 (215)
T 2zfu_A 26 QRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL-- 97 (215)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--
T ss_pred HHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--
Confidence 45577777777766555533 223222 2345689999999999998884 36899999966
Q ss_pred HHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---hHHHHHHHH
Q 010599 391 GVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIV 467 (506)
Q Consensus 391 ~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~ 467 (506)
.+ .....-.+.++..+++||+|++..+|+ ..++..+|.++.|+|||||+++|.+... ..+++.+++
T Consensus 98 ------~~-~~~~~d~~~~~~~~~~fD~v~~~~~l~----~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l 166 (215)
T 2zfu_A 98 ------DP-RVTVCDMAQVPLEDESVDVAVFCLSLM----GTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAV 166 (215)
T ss_dssp ------ST-TEEESCTTSCSCCTTCEEEEEEESCCC----SSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHH
T ss_pred ------Cc-eEEEeccccCCCCCCCEeEEEEehhcc----ccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 11 111111233443348999999988885 3678999999999999999999988654 568899999
Q ss_pred hcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 468 GGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 468 ~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
...++++...+... ....+++++|.
T Consensus 167 ~~~Gf~~~~~~~~~---~~~~~~~~~k~ 191 (215)
T 2zfu_A 167 TKLGFKIVSKDLTN---SHFFLFDFQKT 191 (215)
T ss_dssp HHTTEEEEEEECCS---TTCEEEEEEEC
T ss_pred HHCCCEEEEEecCC---CeEEEEEEEec
Confidence 99999976644432 24688888886
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=130.24 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=92.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCceeEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIH 420 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~D~v~ 420 (506)
.+......+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ |+ +.....-.+.++..+++||+|+
T Consensus 16 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 92 (239)
T 1xxl_A 16 TAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIIT 92 (239)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEE
T ss_pred HhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEE
Confidence 3444556789999999999999998865 3899999999999988775 32 1222222234444448999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-------------------------hHHHHHHHHhcCCceEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------------------~~~~~~~~~~~~~w~~~ 475 (506)
+..++.++ .++..+|.|+.|+|||||+++|.+... ..+++.+++.+.+++..
T Consensus 93 ~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~ 169 (239)
T 1xxl_A 93 CRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 169 (239)
T ss_dssp EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred ECCchhhc---cCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEE
Confidence 99998854 478899999999999999999975321 23556677777777754
Q ss_pred E
Q 010599 476 M 476 (506)
Q Consensus 476 ~ 476 (506)
.
T Consensus 170 ~ 170 (239)
T 1xxl_A 170 D 170 (239)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=132.91 Aligned_cols=118 Identities=10% Similarity=0.118 Sum_probs=91.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC--CCCCCceeEEEEccccccccC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF--STYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~--~~~p~s~D~v~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+ .+|+++|.|+.|++.+.++ + .....-.+++ +..+++||+|+|..+|+|..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-~-~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~- 115 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK-F-NVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD- 115 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT-S-EEECSCHHHHHHTSCTTCBSEEEEESCGGGSC-
T ss_pred CCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-c-ceeeccHHHHhhhcCCCCeeEEEECCchhhCC-
Confidence 4689999999999999998865 3689999999999999988 2 2221111222 33349999999999999765
Q ss_pred CCCHHHHHHHHhhcccCCcEEEEEeChh-------------------hHHHHHHHHhcCCceEEE
Q 010599 431 KCNIEDILLEMDRILRPEGAIIIRDEVD-------------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------------------~~~~~~~~~~~~~w~~~~ 476 (506)
..++..+|.++.|+|||||+++|..... ..+.++.++.+.++++..
T Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 180 (240)
T 3dli_A 116 PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVK 180 (240)
T ss_dssp GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEE
Confidence 3366899999999999999999975321 336788899999998553
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=133.42 Aligned_cols=121 Identities=16% Similarity=0.129 Sum_probs=93.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~D~v~~~~ 423 (506)
.+..+|||+|||+|.++..|++.+ ..+|+++|.++.|++.|.++ |+...+...+.+ ++..+++||+|+|..
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTC--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 445689999999999999999873 25899999999999998876 332222222333 333348999999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh---------------------hhHHHHHHHHhcCCceEEEe
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
+|.+. ++..+|.++.|+|||||+++|.+.. .....+.+++.+.+|++...
T Consensus 123 ~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 123 AIYNI----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp CGGGT----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred Cceec----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 99854 6789999999999999999997632 13567888899999996543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=131.98 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=91.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
......+.+.+... .++.+|||||||+|.++..+++. .++++|+++.++..+... +...+.. +.+.+.|...+
T Consensus 31 ~~~~~~~l~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~ 108 (257)
T 3f4k_A 31 PEATRKAVSFINEL-TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN-AVKANCADRVKGITGSMDNL 108 (257)
T ss_dssp HHHHHHHHTTSCCC-CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChhhC
Confidence 44555566666321 23459999999999999999876 589999988766554433 3344443 78888999999
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+++++||+|+|..+++|+ +...+++++.++|||||++++..+
T Consensus 109 ~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 109 PFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp SSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999886 578999999999999999999864
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=133.25 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=93.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc---cceeccccccCC-CCCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFS-TYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~---~~~~~~~~~~~~-~~p~s~D~v~~~~~ 424 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++ |+ +..+..-.+.++ ..+++||+|++..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4689999999999999999875 5899999999999999876 32 112222223444 33499999999999
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------------------------------hHHHHHHHHhcC
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------------------------EIIKVKKIVGGM 470 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------------------------~~~~~~~~~~~~ 470 (506)
|.+. .++..+|.|+.|+|||||+++|.+... ..+++.+++++.
T Consensus 146 l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 222 (285)
T 4htf_A 146 LEWV---ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA 222 (285)
T ss_dssp GGGC---SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT
T ss_pred hhcc---cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC
Confidence 9855 477899999999999999999976321 236889999999
Q ss_pred CceEEEe
Q 010599 471 RWDTKMV 477 (506)
Q Consensus 471 ~w~~~~~ 477 (506)
+|++...
T Consensus 223 Gf~v~~~ 229 (285)
T 4htf_A 223 GWQIMGK 229 (285)
T ss_dssp TCEEEEE
T ss_pred CCceeee
Confidence 9997633
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=132.26 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=87.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHc--CCCeEEEEeccccCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~--~~~~~~~~~d~~~lp~~~ 164 (506)
..+.+.++. .++.+|||||||+|.++..+++.+ ++++|+++.++ +.++++ ...+.+...|+..+++++
T Consensus 34 ~~l~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 34 HELKKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERML-----TEAKRKTTSPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHHHTTCCC--CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHHCCCTTEEEEECCGGGCCCCT
T ss_pred HHHHHhhhc--cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHH-----HHHHHhhccCCeEEEEcchhhCCCCC
Confidence 455666643 345699999999999999998873 77888876544 444433 346788889999999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|+|..+++|+ +++..+++++.++|||||.++++++.
T Consensus 107 ~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 107 DAYNVVLSSLALHYI-ASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp TCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeEEEEEchhhhhh-hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999999999776 67899999999999999999998643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=129.65 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=87.9
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 010599 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+...........+.+.+.|...+|+++++||+
T Consensus 13 ~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 90 (239)
T 1xxl_A 13 MIKTAECR--AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI 90 (239)
T ss_dssp HHHHHTCC--TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred HHHHhCcC--CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEE
Confidence 34444333 4559999999999999999887 4899999887775554443332223478888899999999999999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+|..+++|+ .++..++.++.++|||||++++..+
T Consensus 91 v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 91 ITCRYAAHHF-SDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCchhhc-cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999886 5689999999999999999999753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=133.48 Aligned_cols=126 Identities=18% Similarity=0.259 Sum_probs=95.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccc---eecccccc---CCCCCCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG---IYHDWCEA---FSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~---~~~~~~~~---~~~~p~s~D~v~~~~~~ 425 (506)
+..+|||+|||+|.++..|++.. ..+|+++|.++.|++.|.++.... .+...+.+ ++..+++||+|++..+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 45689999999999999998865 358999999999999998874211 11122233 33333699999999999
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---------------hHHHHHHHHhcCCceEEEeecC
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------EIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
.+..+ ..+..+|.++.|+|||||+++|.|... ..+++++++.+.+|++......
T Consensus 157 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 157 GHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 86542 124589999999999999999976421 4788999999999997755443
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=128.23 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=96.5
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----cceeccccccCCCCC--CceeEEEEcccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP--RTYDLIHAHGLFSL 427 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~~~~~~~~~~~~~~p--~s~D~v~~~~~~~~ 427 (506)
.+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++.- ...+...+.++..++ .+||+|++..+|.+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 489999999999999998865 689999999999999988732 122333445554443 79999999999986
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeChh-----------hHHHHHHHHhcCCceEEEeec
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----------EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----------~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.. ..+...+|.++.|+|||||++++.+... ..+++++++.+.+|++..++.
T Consensus 145 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 145 IE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp SC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 64 4477899999999999999999964311 468899999999999775543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-11 Score=125.95 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=83.3
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--eecccccc-CCCCC-Cce
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEA-FSTYP-RTY 416 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~~~~-~~~~p-~s~ 416 (506)
+..+......+|||+|||+|.++..+++.. ....|+++|.++.|++.|.++ |+.. .+...+.+ +..++ ++|
T Consensus 215 l~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~f 293 (375)
T 4dcm_A 215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRF 293 (375)
T ss_dssp HHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCE
T ss_pred HHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCe
Confidence 333444444789999999999999998752 125899999999999988775 2211 11112222 22344 799
Q ss_pred eEEEEccccccccC--CCCHHHHHHHHhhcccCCcEEEEEe--ChhhHHHHHHHHh
Q 010599 417 DLIHAHGLFSLYKD--KCNIEDILLEMDRILRPEGAIIIRD--EVDEIIKVKKIVG 468 (506)
Q Consensus 417 D~v~~~~~~~~~~~--~~~~~~~l~e~~RvLrPgG~~ii~d--~~~~~~~~~~~~~ 468 (506)
|+|+++..|++... ......+|.++.|+|||||.++|.. ..++...+++++.
T Consensus 294 D~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 294 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp EEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred eEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence 99999988874322 2223468999999999999999954 3446677777666
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=131.09 Aligned_cols=116 Identities=16% Similarity=0.276 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC---CCeEEEEec
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG---VPAVIGVLG 156 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~---~~~~~~~~d 156 (506)
.+.....+.+.+.+... ++.+|||||||+|.++..+++. .++++|+++. +++.++++. ..+.+.+.|
T Consensus 38 ~~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d 110 (266)
T 3ujc_A 38 SGGLEATKKILSDIELN--ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSN-----IVNMANERVSGNNKIIFEAND 110 (266)
T ss_dssp TTHHHHHHHHTTTCCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH-----HHHHHHHTCCSCTTEEEEECC
T ss_pred cchHHHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHHhhcCCCeEEEECc
Confidence 44445556677776443 4559999999999999999886 4778888764 445555543 467888889
Q ss_pred cccCCCCCCCeeEEEEcCcccccC-CChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 157 TIKMPYASRAFDMAHCSRCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 157 ~~~lp~~~~sfDlV~~~~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...+|+++++||+|++..+++|+. .+...+++++.++|||||++++..+
T Consensus 111 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 111 ILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999999999999999999998863 4458999999999999999999864
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-13 Score=127.33 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=83.2
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC-----CCeEEEEeccc
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG-----VPAVIGVLGTI 158 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~-----~~~~~~~~d~~ 158 (506)
..+.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++..+........- ..+.+...|..
T Consensus 17 ~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 17 RLGTVVAVLKSV--NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp HHHHHHHHHHHT--TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred HHHHHHHHHhhc--CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 334455555322 3459999999999999999875 478999988666544433322111 15788888888
Q ss_pred cCCCCCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEE
Q 010599 159 KMPYASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 159 ~lp~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~ 203 (506)
.+++++++||+|+|..+++|+ +++ ..+++++.++|||||+++.+
T Consensus 95 ~~~~~~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 95 YRDKRFSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp SCCGGGTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred ccccccCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 888878899999999999886 433 68999999999999966654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=121.32 Aligned_cols=140 Identities=14% Similarity=0.052 Sum_probs=102.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEc-ccccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAH-GLFSLYK 429 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~~-~~~~~~~ 429 (506)
+..+|||+|||+|.++..|++.+ .+|+++|.++.+++.+.++.. +.....-...++..+++||+|+++ .++++..
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 45689999999999999999875 489999999999999988742 122211112223223899999998 6776542
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEeChh---hHHHHHHHHhcCCceEEEeecC-----CCCCCCeEEEEEEec
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHE-----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~l~~~k~ 495 (506)
..+...+|.++.|+|||||.+++..... ..+++..++.+.++++...... .....+..+++++|+
T Consensus 123 -~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 123 -EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred -hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 2355789999999999999999976543 5678999999999997754332 122346788888884
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=132.75 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=92.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--------------------cceeccccccCCC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--------------------IGIYHDWCEAFST 411 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--------------------~~~~~~~~~~~~~ 411 (506)
...+|||+|||+|.++..|++.| .+|+++|.|+.|++.|+++.- ...+...+.++..
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 34689999999999999999986 489999999999999976531 1223344555544
Q ss_pred CC----CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe-C-----------hhhHHHHHHHHhcCCceEE
Q 010599 412 YP----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-E-----------VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 412 ~p----~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~-----------~~~~~~~~~~~~~~~w~~~ 475 (506)
++ ++||+|++..+|.++. ..+...++.+|.|+|||||+++|.. . .-..+++..++.. .|++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 33 7999999998888764 4466789999999999999996431 0 0145788898887 48876
Q ss_pred Eee
Q 010599 476 MVD 478 (506)
Q Consensus 476 ~~~ 478 (506)
...
T Consensus 223 ~~~ 225 (252)
T 2gb4_A 223 CLE 225 (252)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=125.66 Aligned_cols=138 Identities=13% Similarity=0.176 Sum_probs=101.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCC--CCCceeEEEEcc-ccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFST--YPRTYDLIHAHG-LFSLY 428 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~--~p~s~D~v~~~~-~~~~~ 428 (506)
.+|||+|||+|.++..|++. .+|+++|.++.|++.|.++.. ...+...+.++.. ++++||+|.+.. +|++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 110 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYL 110 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGC
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhc
Confidence 68999999999999999886 489999999999999987621 0111112233322 348999999986 88877
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEeC----------------------------------------------------
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIRDE---------------------------------------------------- 456 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~---------------------------------------------------- 456 (506)
.+..++..+|.++.|+|||||.+++.-.
T Consensus 111 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (243)
T 3d2l_A 111 QTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYD 190 (243)
T ss_dssp CSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceE
Confidence 6556778899999999999999998210
Q ss_pred ---------hhhHHHHHHHHhcCCceEEEeecC-----CCCCCCeEEEEEEec
Q 010599 457 ---------VDEIIKVKKIVGGMRWDTKMVDHE-----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 457 ---------~~~~~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~l~~~k~ 495 (506)
.-..+++++++++.++++..+... .+...+..+++|+|+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 191 RVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred EEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 014578999999999997654322 122346788999984
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=133.20 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=79.0
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~ 426 (506)
+...+..+|||+|||+|.++..|++.+ .+|+++|.|+.|++.+.++.. +.....-.+.++ ++++||+|++..+|.
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 128 (279)
T 3ccf_A 53 LNPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLH 128 (279)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGG
T ss_pred hCCCCCCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhh
Confidence 334456689999999999999999854 589999999999999988731 122211123343 358999999999998
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+. .++..+|.|+.|+|||||++++..
T Consensus 129 ~~---~d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 129 WV---KEPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp GC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hC---cCHHHHHHHHHHhcCCCcEEEEEe
Confidence 54 478899999999999999999964
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=128.07 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=94.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----cc----ceeccccccCCCCC---CceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LI----GIYHDWCEAFSTYP---RTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~----~~~~~~~~~~~~~p---~s~D~v~ 420 (506)
+..+|||+|||+|.++..|++.+. ..+|+++|.++.|++.|.++- +. ..+...+.+++..+ ++||+|.
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 456899999999999999988642 248999999999999998872 11 02333345555444 7999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------------------hHHHHH----HHHhcCCceE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------------EIIKVK----KIVGGMRWDT 474 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------------~~~~~~----~~~~~~~w~~ 474 (506)
+..+|.++. ..++..+|.++.|+|||||.+++.+..+ ..++++ .++.+.++++
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v 186 (217)
T 3jwh_A 108 VIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNV 186 (217)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEE
T ss_pred eHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceE
Confidence 999999663 2245789999999999999888865432 223344 8899999998
Q ss_pred EEeecC
Q 010599 475 KMVDHE 480 (506)
Q Consensus 475 ~~~~~~ 480 (506)
......
T Consensus 187 ~~~~~g 192 (217)
T 3jwh_A 187 QFQPIG 192 (217)
T ss_dssp EECCCS
T ss_pred EEEecC
Confidence 765433
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=130.61 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||||||+|.++..+++. .++++|+++.++..+.... ......+.+.+.|...+|+++++||+|++..+++|+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 117 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV 117 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchhhc
Confidence 4569999999999999999887 4788888776554333222 112346788888999999989999999999998664
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEE
Q 010599 180 GANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++...+++++.++|||||++++.
T Consensus 118 -~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 118 -PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHCCCCcEEEEE
Confidence 57899999999999999999987
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=132.39 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=92.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~D~v~ 420 (506)
......+|||+|||+|.++..|++. + .+|+++|.++.|++.|.++ |+...+...+.+ ++..+++||+|+
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 155 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW 155 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEE
Confidence 3345668999999999999999875 4 4899999999999988775 332222222333 343348999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------------------hHHHHHHHHhcCCceEEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------------EIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------------~~~~~~~~~~~~~w~~~~ 476 (506)
+..++.|.. ++..+|.|+.|+|||||+++|.+... ....+.+++.+.+|++..
T Consensus 156 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 230 (297)
T 2o57_A 156 SQDAFLHSP---DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLR 230 (297)
T ss_dssp EESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEE
T ss_pred ecchhhhcC---CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEE
Confidence 999999655 57899999999999999999975311 345677788888988553
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=130.78 Aligned_cols=143 Identities=10% Similarity=0.005 Sum_probs=101.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccce-----------------------------
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI----------------------------- 401 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~----------------------------- 401 (506)
.+..+|||+|||+|.++..++..+. .+|+++|.|+.|++.+.++.-...
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 3456899999999999988887652 589999999999999876521000
Q ss_pred ---e-ccccccC---CC-CC---CceeEEEEccccccccC-CCCHHHHHHHHhhcccCCcEEEEEeChh-----------
Q 010599 402 ---Y-HDWCEAF---ST-YP---RTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEVD----------- 458 (506)
Q Consensus 402 ---~-~~~~~~~---~~-~p---~s~D~v~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------- 458 (506)
+ .....++ .. .+ ++||+|++..+|++... ..++..+|.++.|+|||||+|++.+...
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 1 1111222 11 23 79999999999885442 2367789999999999999999976321
Q ss_pred -----hHHHHHHHHhcCCceEEEeecCCC-------CCCCeEEEEEEec
Q 010599 459 -----EIIKVKKIVGGMRWDTKMVDHEDG-------PLVPEKILVAVKQ 495 (506)
Q Consensus 459 -----~~~~~~~~~~~~~w~~~~~~~~~~-------~~~~~~~l~~~k~ 495 (506)
..+.+.+++.+.++++........ ......+++|+|+
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred cccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 345899999999998765443211 1124678888885
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=129.88 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=80.1
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||||||+|.++..+++. .++++|+++.++ +.++++.. .+.+.+.+...+ +++++||+|+|..+++|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~ 116 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAI-----SHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHI 116 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHH-----HHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGC
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHH-----HHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhh
Confidence 347999999999999999887 488888876544 44444432 577888888777 467899999999999885
Q ss_pred CCChHHHHHHHH-HhcCCCeEEEEEcCCC
Q 010599 180 GANDGRYMIEVD-RVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~-rvLkPGG~li~~~p~~ 207 (506)
+++..+|+++. |+|||||+++++++..
T Consensus 117 -~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 117 -DDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp -SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred -cCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 56899999999 9999999999988654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-13 Score=129.55 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=94.5
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCce
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTY 416 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~ 416 (506)
++..+...+..+|||+|||+|.++..|++.. ..+|+++|.|+.|++.+.++ |+...+...+.+ ++..+++|
T Consensus 53 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 130 (273)
T 3bus_A 53 MIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASF 130 (273)
T ss_dssp HHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCE
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCc
Confidence 3344444556789999999999999998742 25899999999999988876 332222222233 34334899
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-------------------------hhHHHHHHHHhcCC
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------------------DEIIKVKKIVGGMR 471 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------------------------~~~~~~~~~~~~~~ 471 (506)
|+|++..+|.|. .+...+|.++.|+|||||+++|.+.. ...+.+.+++.+.+
T Consensus 131 D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 207 (273)
T 3bus_A 131 DAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE 207 (273)
T ss_dssp EEEEEESCTTTS---SCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred cEEEEechhhhC---CCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence 999999999855 46789999999999999999997621 02366778888889
Q ss_pred ceEEE
Q 010599 472 WDTKM 476 (506)
Q Consensus 472 w~~~~ 476 (506)
|++..
T Consensus 208 f~~~~ 212 (273)
T 3bus_A 208 LVVTS 212 (273)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=132.58 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC--
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-- 160 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l-- 160 (506)
.+...+.+...++.. .++.+|||||||+|.++..+++. .++++|+++ .+++.+.++ +.+...+...+
T Consensus 25 ~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~---~~~~~~d~~~~~~ 95 (240)
T 3dli_A 25 RELVKARLRRYIPYF-KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINE-----DMIKFCEGK---FNVVKSDAIEYLK 95 (240)
T ss_dssp HHHHHHHHGGGGGGT-TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCH-----HHHHHHHTT---SEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHhhh-cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCH-----HHHHHHHhh---cceeeccHHHHhh
Confidence 344555565555422 23458999999999999999886 477777765 455555554 56667777664
Q ss_pred CCCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEcCCCC
Q 010599 161 PYASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p~~~ 208 (506)
|+++++||+|+|..+++|+.. +...+++++.++|||||++++.++...
T Consensus 96 ~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 96 SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 888999999999999988643 228999999999999999999886553
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=131.82 Aligned_cols=106 Identities=8% Similarity=-0.038 Sum_probs=80.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC-----CCCceeEEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-----YPRTYDLIHA 421 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~-----~p~s~D~v~~ 421 (506)
.+......+|||+|||+|.++..|++++ ..|+++|.|++|++.|.++.-...+..-.++++. .+++||+|+|
T Consensus 40 ~l~l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~ 116 (261)
T 3iv6_A 40 LENIVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLN 116 (261)
T ss_dssp TTTCCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred hcCCCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEE
Confidence 3444456789999999999999999876 4899999999999999987421111111123322 2479999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+.+|+|+. ..++..+|.+|.|+| |||.++++-..
T Consensus 117 ~~~l~~~~-~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 117 DRLINRFT-TEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hhhhHhCC-HHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 99998654 335678999999999 99999997543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-13 Score=130.82 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=93.7
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--
Q 010599 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-- 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~-- 148 (506)
|......+.......++.+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+.
T Consensus 38 ~~~~~~~l~~a~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~~~~~ 114 (287)
T 1kpg_A 38 FERDDMTLQEAQIAKIDLALGKLGLQ--PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLR 114 (287)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTTTCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCS
T ss_pred ecCCCCCHHHHHHHHHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCC
Confidence 33344445555566777777777543 3459999999999999999843 4888888876654443332 22232
Q ss_pred CeEEEEeccccCCCCCCCeeEEEEcCcccccC-CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 149 PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 149 ~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+.+...|...+| ++||+|++..+++|+. .+...+++++.++|||||.+++..+.
T Consensus 115 ~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 115 SKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp CEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 4677778887776 7899999999998875 35689999999999999999997643
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=132.84 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
++.+|||||||+|.++..|++. .++++|+++.++..+...........+.+...|...+++++++||+|++..+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 3569999999999999998876 4788999876664443332221123467788888888888889999999999988
Q ss_pred cCCC-hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 179 WGAN-DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 179 ~~~~-~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.+. ...+++++.++|||||+|++..+
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 6432 24899999999999999999764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-13 Score=127.97 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=92.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc---cCCCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE---AFSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~---~~~~~p~s~D~v~~~~ 423 (506)
.+..+|||+|||+|.++..|++... .+|+++|.++.|++.|.++ |+...+...+. .++..+++||+|++..
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 3445899999999999999988642 2899999999999988776 32211222233 3443348999999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh---------------------hhHHHHHHHHhcCCceEEEe
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
++.+. ++..+|.++.|+|||||+++|.+.. ...+++.+++.+.+|++...
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 88854 6889999999999999999998631 13467888899999986543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=132.12 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
...+...+.+.+.. .++.+|||||||+|.++..|++. .++++|+++.++..+...... ...+.+...+...++
T Consensus 78 ~~~~~~~~l~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 78 DIEGSRNFIASLPG--HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETAT 153 (254)
T ss_dssp HHHHHHHHHHTSTT--CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCC
T ss_pred HHHHHHHHHHhhcc--cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc--CCceEEEEccHHHCC
Confidence 34444556666533 34569999999999999998875 388999887555433322111 134777888888899
Q ss_pred CCCCCeeEEEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 162 YASRAFDMAHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++++||+|+|..+++|+.+ +...+++++.++|||||++++..+
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 98899999999999988653 347999999999999999999874
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=121.43 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=84.5
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 010599 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDM 169 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDl 169 (506)
+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+...........+.+...|...+++ +++||+
T Consensus 24 l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~ 100 (199)
T 2xvm_A 24 VLEAVKVV--KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDF 100 (199)
T ss_dssp HHHHTTTS--CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEE
T ss_pred HHHHhhcc--CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceE
Confidence 34444332 3459999999999999999987 488999988776555444333322257888889888888 789999
Q ss_pred EEEcCcccccCC-ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 170 AHCSRCLIPWGA-NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 170 V~~~~~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++..+++|+.. +...+++++.++|||||++++..
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 999999987643 44899999999999999988754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=130.30 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH-----------------HcCCCeEEEEeccccCCC
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL-----------------ERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~-----------------~~~~~~~~~~~d~~~lp~ 162 (506)
.+.+|||+|||+|..+..|++++ |+++|+|+.++..+..+... ..+..+.+.++|+..+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 34589999999999999999985 78888887766544322210 012467888999999887
Q ss_pred CC-CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010599 163 AS-RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 163 ~~-~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
++ ++||+|++..+++++.... ..+++++.++|||||+|++.
T Consensus 148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 64 8999999998887765433 67999999999999999754
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=130.85 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=89.5
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~ 162 (506)
.+.+.+...... .++.+|||||||+|.++..+++. .++++|+++.++..+...........+.+...|...+++
T Consensus 24 ~l~~~l~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 101 (276)
T 3mgg_A 24 TLEKLLHHDTVY--PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF 101 (276)
T ss_dssp HHHHHHHTTCCC--CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS
T ss_pred HHHHHHhhcccC--CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC
Confidence 333344444432 34569999999999999999876 488999988766555443333222357888889999999
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++||+|++..+++|+ +++..+++++.++|||||++++..+.
T Consensus 102 ~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 102 EDSSFDHIFVCFVLEHL-QSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp CTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCeeEEEEechhhhc-CCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999999999999775 66789999999999999999998643
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=131.52 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=98.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~D~v~~~~~~ 425 (506)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++ |+ .+...+.++..+ +++||+|+++.+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~ 194 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVF 194 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSG
T ss_pred CCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccch
Confidence 45689999999999999999986 4899999999999988776 22 222223333332 5899999999999
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--------------hhHHHHHHHHhcCCceEEEeecC---------CC
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------DEIIKVKKIVGGMRWDTKMVDHE---------DG 482 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------~~~~~~~~~~~~~~w~~~~~~~~---------~~ 482 (506)
++.. ...+..+|.++.|+|||||.++|.... -..+++++++.. |++...+.. +|
T Consensus 195 ~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~g 271 (286)
T 3m70_A 195 MFLN-RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNENMGELHKTDENG 271 (286)
T ss_dssp GGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECCEEEEEEECSSC
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEccCCeeeeccCCC
Confidence 8664 446778999999999999998874321 135678888876 887654322 22
Q ss_pred CC--CCeEEEEEEec
Q 010599 483 PL--VPEKILVAVKQ 495 (506)
Q Consensus 483 ~~--~~~~~l~~~k~ 495 (506)
.. -+...++|+|+
T Consensus 272 ~~~~~~~~~l~arK~ 286 (286)
T 3m70_A 272 NRIKMKFATMLARKK 286 (286)
T ss_dssp CEEEEEEEEEEEECC
T ss_pred CEEEEEEEEEEEecC
Confidence 21 13667888885
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=127.05 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=85.6
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+...+...+.. .++.+|||||||+|.++..|++. .++++|+++.++..+..... ....+.+.+.|...++ ++
T Consensus 38 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSS--GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTK--RWSHISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHHTTT--SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTT--TCSSEEEEECCTTTCC-CS
T ss_pred HHHHHHHHHccc--CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcc--cCCCeEEEEcchhhCC-CC
Confidence 343445545533 34458999999999999999987 47888887755543332221 1235788888988888 67
Q ss_pred CCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 165 RAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++||+|+|+.+++|+. ++ ..++.++.++|||||+++++++..
T Consensus 113 ~~fD~v~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLE-DMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp CCEEEEEEESCGGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCccEEEEccHHHhCC-CHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8999999999998864 34 578999999999999999987654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=119.65 Aligned_cols=139 Identities=16% Similarity=0.124 Sum_probs=88.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCC-CCceeEEEEc-cc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAH-GL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~-p~s~D~v~~~-~~ 424 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++ |+ +...++-.+.++.+ +++||+|+++ ..
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 4579999999999999999873 6899999999999998876 33 22222223333323 4899999886 22
Q ss_pred ccccc-----CCCCHHHHHHHHhhcccCCcEEEEEeCh------hhHHHHHHHHhcC---CceEEEeecCCCCCCCeEEE
Q 010599 425 FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGM---RWDTKMVDHEDGPLVPEKIL 490 (506)
Q Consensus 425 ~~~~~-----~~~~~~~~l~e~~RvLrPgG~~ii~d~~------~~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~l 490 (506)
+.... .......+|.++.|+|||||.+++..-. +..+.+.+.+..+ .|.+.....-.....+-.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV 179 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEE
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEE
Confidence 22100 1123457899999999999999996432 2334555555544 48876554443322333444
Q ss_pred EEEe
Q 010599 491 VAVK 494 (506)
Q Consensus 491 ~~~k 494 (506)
+..|
T Consensus 180 ~i~~ 183 (185)
T 3mti_A 180 MLEK 183 (185)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-11 Score=126.91 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=83.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCCC---CCceeEEEEccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFSTY---PRTYDLIHAHGLFS 426 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~~---p~s~D~v~~~~~~~ 426 (506)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++-- .+ .+...+.++... +++||+|+++..|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 34589999999999999999875 489999999999998887521 00 011122333222 27999999998888
Q ss_pred cccC--CCCHHHHHHHHhhcccCCcEEEEEeCh--hhHHHHHHHHhc
Q 010599 427 LYKD--KCNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVGG 469 (506)
Q Consensus 427 ~~~~--~~~~~~~l~e~~RvLrPgG~~ii~d~~--~~~~~~~~~~~~ 469 (506)
+... ......++.++.|+|||||.++|.... .+...+++.+..
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~ 356 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGA 356 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSC
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhcc
Confidence 5332 234568999999999999999996543 355666666553
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-13 Score=131.39 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=95.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--c----cceeccccccCCCCC-CceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L----IGIYHDWCEAFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~----~~~~~~~~~~~~~~p-~s~D~v~~~~~~ 425 (506)
..+|||+|||||+|+..|++.+. ..|+++|.+++||..+..+. + ...+.... ...+| .+||+|.++.+|
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~fD~v~~d~sf 161 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGLPSFASIDVSF 161 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCCCSEEEECCSS
T ss_pred ccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCCCCEEEEEeeH
Confidence 46899999999999999988752 48999999999999865432 1 01111111 11245 569999998888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeC----------------------hhhHHHHHHHHhcCCceEEEeecC--C
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE----------------------VDEIIKVKKIVGGMRWDTKMVDHE--D 481 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~----------------------~~~~~~~~~~~~~~~w~~~~~~~~--~ 481 (506)
. .+..+|.|+.|+|||||.+++... ....+++..++...+|.+...... .
T Consensus 162 ~------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~ 235 (291)
T 3hp7_A 162 I------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ 235 (291)
T ss_dssp S------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred h------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 6 346799999999999999998511 015677888899999997744332 2
Q ss_pred C-CCCCeEEEEEEec
Q 010599 482 G-PLVPEKILVAVKQ 495 (506)
Q Consensus 482 ~-~~~~~~~l~~~k~ 495 (506)
| ..+.|+++.++|.
T Consensus 236 g~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 236 GGHGNIEFLAHLEKT 250 (291)
T ss_dssp CGGGCCCEEEEEEEC
T ss_pred CCCcCHHHHHHhhhc
Confidence 2 2256888888873
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-13 Score=131.81 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=73.8
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc------ceeccccccCCCC--CCceeEEEEccccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI------GIYHDWCEAFSTY--PRTYDLIHAHGLFS 426 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~------~~~~~~~~~~~~~--p~s~D~v~~~~~~~ 426 (506)
+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++... ..+...+.++..+ +++||+|++...+.
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSI 161 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHHH
T ss_pred cEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCccc
Confidence 89999999999999999875 5799999999999999887210 1122233444433 59999999754433
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+..+..+...+|.++.|+|||||+|+|.+
T Consensus 162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 162 NELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp TTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 33333356889999999999999999954
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-13 Score=131.80 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=88.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~ 164 (506)
+.+.+.+.. ..++.+|||||||+|.++..|+++ .++++|+++.++..+... +...++ .+.+...|...+|+++
T Consensus 106 ~~l~~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRR-ARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSCC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhcc-CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhcCCCCC
Confidence 345555541 234569999999999999999876 488999988766544433 333444 4888899999999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++..+++|+ +...+++++.++|||||++++.++
T Consensus 184 ~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 184 GAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp TCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999999886 389999999999999999999763
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=124.92 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
++.+|||||||+|.++..+ .. .++++|+++.++ +.++++...+.+...+...+|+++++||+|++..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAML-----AVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV- 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHH-----HHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTC-
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHH-----HHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhc-
Confidence 4569999999999999988 44 578888876544 444444345778888888999999999999999999775
Q ss_pred CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 181 ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++..+++++.++|||||.++++++..
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 578999999999999999999987654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=132.15 Aligned_cols=102 Identities=20% Similarity=0.137 Sum_probs=82.5
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCCCeeEEEEcCccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~~~sfDlV~~~~~l~ 177 (506)
+.+|||||||+|.++..|++. .++++|+++.++..+..... ..+. .+.+...|...++ +++++||+|+|..+++
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 147 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAE-AKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE 147 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-C-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence 458999999999999999987 47889998866654443332 2333 4778888988887 7889999999999997
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
|+ +++..+++++.++|||||++++..+.
T Consensus 148 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 148 WV-ADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp GC-SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cc-cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 75 67899999999999999999998643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-13 Score=135.80 Aligned_cols=145 Identities=10% Similarity=0.037 Sum_probs=95.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------------------cc-------------
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------------------IG------------- 400 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------------------~~------------- 400 (506)
...+|||+|||+|.++..++... ..+|+++|.|+.|++.|.++-- .+
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 45689999999999654444322 2489999999999998876310 01
Q ss_pred -----e-eccccccCCC----CC-CceeEEEEccccccccC-CCCHHHHHHHHhhcccCCcEEEEEeCh-----------
Q 010599 401 -----I-YHDWCEAFST----YP-RTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV----------- 457 (506)
Q Consensus 401 -----~-~~~~~~~~~~----~p-~s~D~v~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~----------- 457 (506)
. ..+..+.++. ++ ++||+|.|+.+|++... ..++..+|.|+.|+|||||+|+|.+..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 0 0021121221 22 67999999999986543 236789999999999999999996421
Q ss_pred -----hhHHHHHHHHhcCCceEEEeecC------CC--CCCCeEEEEEEecccc
Q 010599 458 -----DEIIKVKKIVGGMRWDTKMVDHE------DG--PLVPEKILVAVKQYWV 498 (506)
Q Consensus 458 -----~~~~~~~~~~~~~~w~~~~~~~~------~~--~~~~~~~l~~~k~~w~ 498 (506)
-..+++.+++.+.++++...... .. ....-.+.+++|+-|.
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC-
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEecccc
Confidence 14688999999999986643221 11 1123455666666554
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-13 Score=129.63 Aligned_cols=123 Identities=11% Similarity=0.158 Sum_probs=91.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCceeEEEEccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~D~v~~~~~ 424 (506)
.+..+|||+|||+|.++..|++.. ....|+++|.++.|++.|.++ ++ +.....-.+.++..+++||+|++..+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 445689999999999999998752 125899999999999988876 32 11121112334444589999999999
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-------------------------------hhHHHHHHHHhcCCce
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------------------------DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------------------------------~~~~~~~~~~~~~~w~ 473 (506)
|.+. .++..+|.++.|+|||||+++|.+.. .....+.+++.+.+++
T Consensus 115 l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 115 LEHL---QSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp GGGC---SCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCE
T ss_pred hhhc---CCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCC
Confidence 9854 47789999999999999999997621 0125677788899998
Q ss_pred EEEe
Q 010599 474 TKMV 477 (506)
Q Consensus 474 ~~~~ 477 (506)
....
T Consensus 192 ~v~~ 195 (276)
T 3mgg_A 192 KIRV 195 (276)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=120.99 Aligned_cols=120 Identities=10% Similarity=0.039 Sum_probs=89.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--CceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~D~v 419 (506)
.+......+|||+|||+|.++..|++.+ ..|+++|.+++|++.|.++ |+...+...+.++.. ++ ..||+|
T Consensus 50 ~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v 126 (204)
T 3njr_A 50 ALAPRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAV 126 (204)
T ss_dssp HHCCCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEE
T ss_pred hcCCCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEE
Confidence 3444456789999999999999998874 6899999999999988876 332123333344443 22 589999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEe
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~ 477 (506)
++...+ +.+ ++.++.|+|||||++++... .+...++.+++++.++++...
T Consensus 127 ~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 127 FIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp EECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred EECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence 985533 556 99999999999999999764 456777888888888876543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.9e-13 Score=128.47 Aligned_cols=110 Identities=22% Similarity=0.336 Sum_probs=85.7
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+.++ ++.+|||||||+|.++..|++.+ ++++|+++.++ +.++++.... +.+.+...++++++
T Consensus 44 ~~~~l~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l-----~~a~~~~~~~-~~~~d~~~~~~~~~ 113 (260)
T 2avn_A 44 IGSFLEEYLK----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEML-----EVAREKGVKN-VVEAKAEDLPFPSG 113 (260)
T ss_dssp HHHHHHHHCC----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHH-----HHHHHHTCSC-EEECCTTSCCSCTT
T ss_pred HHHHHHHhcC----CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHH-----HHHHhhcCCC-EEECcHHHCCCCCC
Confidence 3344555553 34589999999999999999874 77888876544 4444443322 67788888999899
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+||+|++..++.|+.+++..+++++.++|||||.+++..+..
T Consensus 114 ~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred CEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 999999998888887778999999999999999999987643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-13 Score=127.84 Aligned_cols=115 Identities=13% Similarity=0.195 Sum_probs=86.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
....+.+.+.+.. ..++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+ .+.+...|...++
T Consensus 29 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~d~~~~~ 105 (234)
T 3dtn_A 29 DDFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRF-RGNL-KVKYIEADYSKYD 105 (234)
T ss_dssp HHHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-CSCT-TEEEEESCTTTCC
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhh-ccCC-CEEEEeCchhccC
Confidence 4444666666652 234569999999999999999876 4788888775543332221 1112 6788888999988
Q ss_pred CCCCCeeEEEEcCcccccCCChH--HHHHHHHHhcCCCeEEEEEcC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDG--RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~--~~l~e~~rvLkPGG~li~~~p 205 (506)
++ ++||+|++..+++|+ +++. .+++++.++|||||++++..+
T Consensus 106 ~~-~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 106 FE-EKYDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp CC-SCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 87 899999999999886 3333 699999999999999999763
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-13 Score=127.29 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=88.9
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+.+.+.+.+.....++.+|||||||+|.++..+++.+ ++++|+++.++..+.... ...+..+.+.+.|...++++
T Consensus 22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~- 99 (246)
T 1y8c_A 22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGLKPRLACQDISNLNIN- 99 (246)
T ss_dssp HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEECCCGGGCCCS-
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCCCeEEEecccccCCcc-
Confidence 34444444443222245699999999999999998874 888999887765554433 33344678888898888877
Q ss_pred CCeeEEEEcC-cccccC--CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 165 RAFDMAHCSR-CLIPWG--ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~-~l~~~~--~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|++.. +++|+. .+...+++++.++|||||.++++.+.
T Consensus 100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 8999999998 998864 34478999999999999999997654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-13 Score=129.71 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=86.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+.+.+.+.++. .++.+|||||||+|.++..+++.+ ++++|+++ .+++.++++. ++.+.+.|...+|+++
T Consensus 21 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~-~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNL--PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSI-----VMRQQAVVHP-QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCC--CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCH-----HHHHSSCCCT-TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCC--CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCH-----HHHHHHHhcc-CCEEEECchhhCCCCC
Confidence 455666676653 345599999999999999999874 77787766 3444444433 7888889999999999
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|+|..+++|+ .++..+++++.++|| ||++++..+
T Consensus 93 ~~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 93 KSVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp TCBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 999999999999886 678999999999999 998777654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.5e-13 Score=131.95 Aligned_cols=105 Identities=8% Similarity=-0.050 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC-------eEEEEecc------ccC--CCC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP-------AVIGVLGT------IKM--PYA 163 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~-------~~~~~~d~------~~l--p~~ 163 (506)
.+.+|||||||+|..+..++.. .|+++|+|+.++..+...... .+.. +.+.+.+. ..+ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~-~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNK-LNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-HCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh-ccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3569999999999766655544 389999999888766654433 3322 34555555 323 466
Q ss_pred CCCeeEEEEcCcccccC--CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 164 SRAFDMAHCSRCLIPWG--ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~--~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++||+|+|.+++++.. .+...+++++.|+|||||+|+++++..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 78999999999886532 234799999999999999999987643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=130.49 Aligned_cols=113 Identities=12% Similarity=0.165 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh---C--CcEEEecCccchHHHHHHHHHH--cCCCeEEEEeccc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS---R--NVIAMSFAPRDSHEAQVQFALE--RGVPAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---~--~v~~vdis~~dl~~~~~~~a~~--~~~~~~~~~~d~~ 158 (506)
..+.+.+.+... .++.+|||||||+|.++..|++ . .++++|+++.++..+....... ....+.+.+.|+.
T Consensus 23 ~~~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 23 SDFYKMIDEYHD---GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHHCC---SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHHhc---CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 344455666553 2456999999999999999994 3 4889999887765554443332 1456888899999
Q ss_pred cCCCCC------CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 159 KMPYAS------RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 159 ~lp~~~------~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+++++ ++||+|+|+.+++|+ +...+++++.++|||||+|++.
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 888877 899999999999776 7899999999999999999984
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=135.61 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=77.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c------cceeccccccCC---CCCCceeE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L------IGIYHDWCEAFS---TYPRTYDL 418 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~------~~~~~~~~~~~~---~~p~s~D~ 418 (506)
+..+|||+|||+|.++..|++.+ .+|+++|.|+.|++.|.++. . +.....-...++ ..+++||+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 45689999999999999999986 38999999999999997652 1 001111011222 33489999
Q ss_pred EEEc-cccccccC----CCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 419 IHAH-GLFSLYKD----KCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 419 v~~~-~~~~~~~~----~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
|+|. .+|.|+.+ ...+..+|.++.|+|||||+++|...
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998 89987664 23478999999999999999999754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=128.86 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=96.8
Q ss_pred HHHhhhcC-CCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC---C
Q 010599 342 KKINRLLD-SGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST---Y 412 (506)
Q Consensus 342 ~~~~~~i~-~~~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~---~ 412 (506)
..++..+. .....+|||+|||+|.++..|++. + .+|+++|.++.|++.|.++ |+...+...+.++.. .
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence 34455554 455678999999999999999886 4 5799999999999988875 332222223334333 2
Q ss_pred CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----------------------hhHHHHHHHHhc
Q 010599 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------DEIIKVKKIVGG 469 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------~~~~~~~~~~~~ 469 (506)
+++||+|++..+|.+. ++..+|.++.|+|||||++++.+.. ...+++.+++++
T Consensus 183 ~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~ 258 (312)
T 3vc1_A 183 KGAVTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMAD 258 (312)
T ss_dssp TTCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHT
T ss_pred CCCEeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 3899999999999855 3889999999999999999996521 034678889999
Q ss_pred CCceEEEe
Q 010599 470 MRWDTKMV 477 (506)
Q Consensus 470 ~~w~~~~~ 477 (506)
.++++...
T Consensus 259 aGf~~~~~ 266 (312)
T 3vc1_A 259 NRLVPHTI 266 (312)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99986543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-13 Score=125.74 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
++.+|||||||+|.++..|++.+ ++++|+++. +++.++++.. .+.+...|...++++ ++||+|+|..+++|
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSRE-----MRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHH-----HHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHH-----HHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 34589999999999999999874 777777664 4444444433 567788888888888 89999999999977
Q ss_pred cCCChHH--HHHHHHHhcCCCeEEEEEcCC
Q 010599 179 WGANDGR--YMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 179 ~~~~~~~--~l~e~~rvLkPGG~li~~~p~ 206 (506)
+ +++.. +++++.++|||||++++..+.
T Consensus 119 ~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 119 L-TDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp S-CHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred C-ChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 6 44544 999999999999999998643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=126.00 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC------CeEEEEecc
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV------PAVIGVLGT 157 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~------~~~~~~~d~ 157 (506)
..+.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++..+..... ..+. .+.+.+.|.
T Consensus 17 ~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~ 93 (217)
T 3jwh_A 17 RMNGVVAALKQS--NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD-RLRLPRNQWERLQLIQGAL 93 (217)
T ss_dssp HHHHHHHHHHHT--TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT-TCCCCHHHHTTEEEEECCT
T ss_pred HHHHHHHHHHhc--CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH-HhcCCcccCcceEEEeCCc
Confidence 334455555322 3459999999999999999875 48899998866654443322 1222 577888888
Q ss_pred ccCCCCCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEEEc
Q 010599 158 IKMPYASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~~~ 204 (506)
..++.+.++||+|+|..+++|+ +++ ..+++++.++|||||+++++.
T Consensus 94 ~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 94 TYQDKRFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp TSCCGGGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccccccCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 7777777899999999999886 434 789999999999999777653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=124.56 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=87.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
+.+.+.+.+.++ .+.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+..+.+...|...++++
T Consensus 26 ~~~~~~l~~~~~----~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~ 100 (227)
T 1ve3_A 26 ETLEPLLMKYMK----KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYA-KSRESNVEFIVGDARKLSFE 100 (227)
T ss_dssp HHHHHHHHHSCC----SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCTTSCCSC
T ss_pred HHHHHHHHHhcC----CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEECchhcCCCC
Confidence 444455555552 2458999999999999999887 4889999887665444333 33346678888898888888
Q ss_pred CCCeeEEEEcCccccc-CCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 164 SRAFDMAHCSRCLIPW-GANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~-~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++||+|+++.++++. ..+...+++++.++|||||.+++..+.
T Consensus 101 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 101 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 8899999999884332 234478999999999999999998653
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-13 Score=130.39 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=91.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEcccccc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~ 427 (506)
+......+|||+|||+|.++..|++.+ .+|+++|.|+.|++.+.++.-+.....-.+.++..+++||+|++.++++|
T Consensus 30 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 106 (261)
T 3ege_A 30 LNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHH 106 (261)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGG
T ss_pred hCCCCCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhh
Confidence 334456789999999999999999865 58999999999999887775223332223445544589999999999985
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeCh------------------------hhHHHHHHHHhcCCceEEE
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------~~~~~~~~~~~~~~w~~~~ 476 (506)
. .++..+|.|+.|+|| ||+++|.+.. ...+.+. ++...+++...
T Consensus 107 ~---~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~ 174 (261)
T 3ege_A 107 F---SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVE 174 (261)
T ss_dssp C---SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEE
T ss_pred c---cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCcee
Confidence 5 578899999999999 9988885432 0335577 88888886443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=128.50 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=94.1
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--
Q 010599 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-- 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~-- 148 (506)
|+.....+.......++.+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...++
T Consensus 46 ~~~~~~~l~~a~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~ 122 (302)
T 3hem_A 46 FERPDMTLEEAQYAKRKLALDKLNLE--PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMF-DEVDSPR 122 (302)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHH-HHSCCSS
T ss_pred ecCCCCCHHHHHHHHHHHHHHHcCCC--CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-HhcCCCC
Confidence 34444445555566777788877544 4459999999999999999876 4889999887665544333 33444
Q ss_pred CeEEEEeccccCCCCCCCeeEEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 149 PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 149 ~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+.+...|...+ +++||+|++..+++|+.+. ...+++++.++|||||++++.+.
T Consensus 123 ~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 123 RKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp CEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred ceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 377778888766 6899999999999886331 16999999999999999999764
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.2e-13 Score=124.24 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
+.+|||||||+|.++..+++.+ ++++|+++.++. .+.++. .+.+...+...++ ++++||+|+|+.+++|+.
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~-----~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 116 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAA-----EASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVP 116 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHH-----HHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSC
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHH-----HHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcC
Confidence 4599999999999999999874 788888775543 333331 3445567888888 788999999999998865
Q ss_pred C-ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 181 A-NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 181 ~-~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. +...+++++.++|||||+++++.+..
T Consensus 117 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 117 RDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 2 34799999999999999999987544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-13 Score=132.34 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=86.0
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCce
Q 010599 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTY 416 (506)
Q Consensus 342 ~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~ 416 (506)
..++..+...+..+|||+|||+|.++..|++. + .+|+++|.+++|++.|.++ |+...+...+.++..+|++|
T Consensus 80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 34444455455678999999999999999875 4 4899999999999999887 33222333345555567999
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
|+|++..+|.+... .++..+|.++.|+|||||+++|.+.
T Consensus 157 D~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 157 DRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp SEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999999986642 4678999999999999999999653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=121.36 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=76.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCCCceeEEEEccccccccC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
...+|||+|||+|.++..| +. .+|+++|.++.|++.+.++. -+.....-.+.++..+++||+|++..++++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-- 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV-- 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTC--
T ss_pred CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhc--
Confidence 4668999999999999888 21 27999999999999999873 1122221123344334899999999999854
Q ss_pred CCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 431 KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.++..+|.|+.|+|||||.++|.+..
T Consensus 109 -~~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 109 -EDVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCHHHHHHHHHHHcCCCCEEEEEecC
Confidence 47889999999999999999998643
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=120.58 Aligned_cols=143 Identities=13% Similarity=0.030 Sum_probs=97.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc---cCC-CCCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE---AFS-TYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~---~~~-~~p~s~D~v~~~~~ 424 (506)
..+|||+|||+|.++..|++.-....+|+++|.++.|++.|.++ |+...+...+. .++ ..+++||+|.++..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 45899999999999999887410114899999999999988876 22122222223 343 34489999999765
Q ss_pred ccc------ccCCCCHHHHHHHHhhcccCCcEEEEEeCh------hhHHHHHHHHhcC---CceEEEeecCCCCCCCeEE
Q 010599 425 FSL------YKDKCNIEDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGM---RWDTKMVDHEDGPLVPEKI 489 (506)
Q Consensus 425 ~~~------~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------~~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~ 489 (506)
+-. ..+..+...+|.++.|+|||||++++.+-. .....+.+++..+ +|++...........+-++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp~~ 182 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPIL 182 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCCEE
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCCeE
Confidence 510 011113457999999999999999997532 1445666666554 5888776665555556778
Q ss_pred EEEEec
Q 010599 490 LVAVKQ 495 (506)
Q Consensus 490 l~~~k~ 495 (506)
++.+|.
T Consensus 183 ~~~~~~ 188 (197)
T 3eey_A 183 VCIEKI 188 (197)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 887775
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.3e-13 Score=123.57 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=94.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----cceeccccccCCCCCCceeEEEEcccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~~~~~~~~~~~~~~p~s~D~v~~~~~~~~ 427 (506)
...+|||+|||+|.++..|++.+.. +|+++|.++.|++.+.++.. +.....-...++..+++||+|++..+|.+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 3467999999999999999987532 89999999999999988732 11121111223333489999999888875
Q ss_pred cc------------CCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHh--cCCceEEEeecCCCCCCCeEEEEEE
Q 010599 428 YK------------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG--GMRWDTKMVDHEDGPLVPEKILVAV 493 (506)
Q Consensus 428 ~~------------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~l~~~ 493 (506)
.. +..++..+|.++.|+|||||.+++.+.... ...+.++. ...|........++. ..++.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 196 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLRHATYGSGF--HFHLYLMH 196 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEEEEEESGGG--CEEEEEEE
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEEEEEecCcc--eEEEEEEE
Confidence 43 123557899999999999999999887642 22334443 335776544444332 44556666
Q ss_pred e
Q 010599 494 K 494 (506)
Q Consensus 494 k 494 (506)
|
T Consensus 197 ~ 197 (215)
T 2pxx_A 197 K 197 (215)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=127.36 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=79.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~ 431 (506)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++........-.+.++..+++||+|.+..++.++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-- 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV-- 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC--
T ss_pred CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcc--
Confidence 45689999999999999999875 4899999999999999988541122111233443348999999987666543
Q ss_pred CCHHHHHHHHhhcccCCcEEEEEeChh
Q 010599 432 CNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
.++..+|.|+.|+|||||.++|.....
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 248899999999999999999976553
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=126.33 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=77.2
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--c---cceeccccccCCCCCCceeEEEEcccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L---IGIYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~---~~~~~~~~~~~~~~p~s~D~v~~~~~~ 425 (506)
.+..+|||+|||+|.++..|++.+ .+|+++|.|+.|++.+.++. . +.....-.+.++..+++||+|++..+|
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 345689999999999999999875 58999999999999998872 1 111211123344334899999999999
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++.. ++..+|.++.|+|||||++++.
T Consensus 115 ~~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 8554 6789999999999999999985
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=127.67 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=88.7
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
.+++.+.+.+.. ..++.+|||||||+|.++..+++. .++++|+++.++..+... ....+.++.+.+.|...++
T Consensus 8 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~~ 85 (284)
T 3gu3_A 8 DYVSFLVNTVWK-ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-FRLLPYDSEFLEGDATEIE 85 (284)
T ss_dssp HHHHHHHHTTSC-CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHH-HHSSSSEEEEEESCTTTCC
T ss_pred HHHHHHHHHHhc-cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEEcchhhcC
Confidence 344445554421 134569999999999999999875 488999988666444332 2333446788888998888
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++ ++||+|++..+++|+ +++..+++++.++|||||++++..+.
T Consensus 86 ~~-~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 LN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cC-CCeeEEEECChhhcC-CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 84 699999999998775 66799999999999999999998876
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=122.03 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=98.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CCCceeEEEEcccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p~s~D~v~~~~~~~~ 427 (506)
..+|||+|||+|.++..|++.+. .+|+++|.++.|++.|.++ ++.. +...+.++.. .+++||+|+++..+++
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred CCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHHH
Confidence 46899999999999999988652 4899999999999998876 3221 2223344433 3499999999776653
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+..+|.++.|+|||||++++.+.. ...+.+.+++.+.+|+....... +.+..++.+++
T Consensus 138 ------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~----~~w~~~~~~~~ 196 (205)
T 3grz_A 138 ------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRA----GRWIGLAISRK 196 (205)
T ss_dssp ------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEE----TTEEEEEEEEC
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeecc----CCEEEEEEecc
Confidence 467999999999999999997643 46778899999999997654443 24666666654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-13 Score=130.74 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=82.8
Q ss_pred CCceEEeecCcccHHHHH----HHhC-CCeEEEEeecCCCcccHHHHHhc-----Cccce-ecc---ccccCC------C
Q 010599 352 RYRNIMDMNAGFGGFAAA----IQSS-KLWVMNVVPTLADKNTLGVIYER-----GLIGI-YHD---WCEAFS------T 411 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~----l~~~-~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~-~~~---~~~~~~------~ 411 (506)
+..+|||||||+|.++.. +... +.....++++|.|++|++.|+++ ++... +.. -.++++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 455899999999986543 3332 11123559999999999998876 22111 110 112232 2
Q ss_pred CCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------------------hHHHHHHHH
Q 010599 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIV 467 (506)
Q Consensus 412 ~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~ 467 (506)
.+++||+|+|..+|+|. .++..+|.||.|+|||||+|+|..... ..+++.+++
T Consensus 132 ~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQML 208 (292)
T ss_dssp CCCCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHH
T ss_pred CCCceeEEEEeeeeeec---CCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHH
Confidence 35899999999999954 588999999999999999999953211 234567777
Q ss_pred hcCCceEE
Q 010599 468 GGMRWDTK 475 (506)
Q Consensus 468 ~~~~w~~~ 475 (506)
.+.++++.
T Consensus 209 ~~aGf~~~ 216 (292)
T 2aot_A 209 DNLGLKYE 216 (292)
T ss_dssp HHHTCCEE
T ss_pred HHCCCceE
Confidence 77777754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=116.88 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=89.8
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc---ceeccccccCCCCCCceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~---~~~~~~~~~~~~~p~s~D~v 419 (506)
.+......+|||+|||+|.++..+++.. ...+|+++|.++.|++.|.++ |+. ....+..+.++..+++||+|
T Consensus 20 ~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i 98 (178)
T 3hm2_A 20 ALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVI 98 (178)
T ss_dssp HHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEE
T ss_pred HhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEE
Confidence 3344556789999999999999998862 237899999999999999876 332 11112223344344899999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEE
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~ 476 (506)
+++..+.+ ..+|.++.|+|||||++++.+.. +....+..+++..++++..
T Consensus 99 ~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 99 FIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp EECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred EECCcccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence 99888874 45999999999999999998754 4666777777777776553
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=129.54 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=92.6
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~v~~~~ 423 (506)
......+|||+|||+|++++.+..+ .....|+++|.+++|++.|+++ |+ ..+...+.+...+| ++||+|++..
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~-~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a 196 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSH-VYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAA 196 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHH-TTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECT
T ss_pred CCCCcCEEEEECCCccHHHHHHHHH-ccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECC
Confidence 3345678999999999887665432 1136899999999999999886 55 33444445554455 8999999854
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHH----HHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIK----VKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
+ ..+.+.++.|+.|+|||||+|++++....... +.. ...-+|+.....+-.+. ....+++++|
T Consensus 197 ~------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~~-v~N~vv~a~k 263 (298)
T 3fpf_A 197 L------AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSGK-VNNTSVLVFK 263 (298)
T ss_dssp T------CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCTT-CCCEEEEEEE
T ss_pred C------ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCCC-cCcEEEEEEc
Confidence 3 24778999999999999999999875431110 000 12237887655554332 2456777777
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-12 Score=122.30 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCC---CCCceeEEEEc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST---YPRTYDLIHAH 422 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~---~p~s~D~v~~~ 422 (506)
...+|||+|||+|.++..|+... ....|+++|.++.|++.|.++ |+ +..++.-.+.++. .+++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 34689999999999988887421 125799999999999988764 33 2222222233443 25899999994
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh---hhHHHHHHHHhcCCceEEEeec--CCCCCCCeEEEEEEeccc
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---DEIIKVKKIVGGMRWDTKMVDH--EDGPLVPEKILVAVKQYW 497 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~l~~~k~~w 497 (506)
. ..++..++.++.|+|||||++++.+.. +.+.++.+.++..++++..... .........+++++|.-.
T Consensus 149 ~-------~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~~ 221 (240)
T 1xdz_A 149 A-------VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKN 221 (240)
T ss_dssp C-------CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSC
T ss_pred c-------cCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecCC
Confidence 4 246889999999999999999997643 3455667778889998653322 111123466777787655
Q ss_pred cc
Q 010599 498 VA 499 (506)
Q Consensus 498 ~~ 499 (506)
++
T Consensus 222 ~~ 223 (240)
T 1xdz_A 222 TP 223 (240)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=126.31 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
....+.+.+...++ ++.+|||||||+|.++..|++.+ ++++|+++. +++.++++...+.+.+.|+..++
T Consensus 36 ~~~~~~~~l~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~d~~~~~ 106 (263)
T 3pfg_A 36 EAADLAALVRRHSP----KAASLLDVACGTGMHLRHLADSFGTVEGLELSAD-----MLAIARRRNPDAVLHHGDMRDFS 106 (263)
T ss_dssp HHHHHHHHHHHHCT----TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHH-----HHHHHHHHCTTSEEEECCTTTCC
T ss_pred HHHHHHHHHHhhCC----CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHH-----HHHHHHhhCCCCEEEECChHHCC
Confidence 33444455555442 34589999999999999999874 778887664 44555555456788889998888
Q ss_pred CCCCCeeEEEEcC-cccccCC--ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSR-CLIPWGA--NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~-~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+ +++||+|+|.. +++|+.. +...+++++.++|||||+|++..
T Consensus 107 ~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 107 L-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp C-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred c-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7 78999999998 8877642 34688999999999999999974
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-13 Score=134.43 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=76.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-----------e-ecccc-----ccCC-CCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-----------I-YHDWC-----EAFS-TYP 413 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-----------~-~~~~~-----~~~~-~~p 413 (506)
..+|||||||+|+.+..++..+. .+|+++|.|+.||+.|++|.. .+ . ..+.+ +.++ .++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46899999999987666665442 479999999999999998731 01 0 11110 2222 133
Q ss_pred -CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 414 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 414 -~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++||+|.|..++++..+..+...+|.++.|+|||||+|+++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999999988876544446789999999999999999998765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-13 Score=132.75 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=88.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHc----CCCeEEEEecccc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALER----GVPAVIGVLGTIK 159 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~----~~~~~~~~~d~~~ 159 (506)
..+.+.+.+.++.. ++.+|||||||+|.++..|++.+ ++++|+|+.++..+..+..... ...+.+...+...
T Consensus 43 ~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 43 AEYKAWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHhccc--CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 33444455555322 34589999999999999999884 7899998877655544332211 1245677778877
Q ss_pred CC---CCCCCeeEEEEc-CcccccCC------ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 160 MP---YASRAFDMAHCS-RCLIPWGA------NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 lp---~~~~sfDlV~~~-~~l~~~~~------~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++ +++++||+|+|. .+++|+.+ +...+++++.++|||||+|+++.+..
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 77 788999999998 78877643 15899999999999999999987643
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=121.42 Aligned_cols=121 Identities=11% Similarity=0.095 Sum_probs=92.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccc-cCCCCCCceeEEEEcccccccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE-AFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~-~~~~~p~s~D~v~~~~~~~~~~ 429 (506)
....+|||+|||+|.++..|++.+ .+++++|.++.|++.+.++...-...+..+ ..+..+++||+|++..+|+|..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 456789999999999999999874 689999999999999988753111111111 1222348999999999998554
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEeCh------------------------------hhHHHHHHHHhcCCceEEEe
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRDEV------------------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
++..+|.++.|+|||||.+++.... -..+++.+++.+.++++...
T Consensus 108 ---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 182 (230)
T 3cc8_A 108 ---DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKV 182 (230)
T ss_dssp ---CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEE
Confidence 6789999999999999999997532 13577888889999986643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=126.15 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=85.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++ +.+.++...+.+...|...++ +++
T Consensus 23 ~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~d~~~~~-~~~ 94 (259)
T 2p35_A 23 RDLLAQVPLE--RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML-----EKAADRLPNTNFGKADLATWK-PAQ 94 (259)
T ss_dssp HHHHTTCCCS--CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH-----HHHHHHSTTSEEEECCTTTCC-CSS
T ss_pred HHHHHhcCCC--CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCCCcEEEECChhhcC-ccC
Confidence 3455666433 3458999999999999998865 588998877544 444444556788888998888 788
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+++.+++|+ ++...+++++.++|||||++++..+.
T Consensus 95 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 95 KADLLYANAVFQWV-PDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp CEEEEEEESCGGGS-TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CcCEEEEeCchhhC-CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99999999998664 67899999999999999999998753
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-13 Score=144.06 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEE---Ee
Q 010599 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIG---VL 155 (506)
Q Consensus 81 f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~---~~ 155 (506)
+......+.+.+.+.+... ++.+|||||||+|.++..|++++ ++++|+++ .+++.|++++.+.... ..
T Consensus 88 ~~~~~~~~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~~~~ 160 (416)
T 4e2x_A 88 MREHFAMLARDFLATELTG--PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSS-----GVAAKAREKGIRVRTDFFEKA 160 (416)
T ss_dssp HHHHHHHHHHHHHHTTTCS--SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCH-----HHHHHHHTTTCCEECSCCSHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCH-----HHHHHHHHcCCCcceeeechh
Confidence 4445566667777777543 45599999999999999999885 56666654 5566677666554321 22
Q ss_pred ccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 156 GTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 156 d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+...+|+++++||+|++..+++|+ +++..+++++.++|||||+|++..+.
T Consensus 161 ~~~~l~~~~~~fD~I~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 161 TADDVRRTEGPANVIYAANTLCHI-PYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp HHHHHHHHHCCEEEEEEESCGGGC-TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHhhcccCCCCEEEEEECChHHhc-CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 345567778899999999999886 57899999999999999999998765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=123.25 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=78.5
Q ss_pred CEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHH-cCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~-~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
.+|||||||+|.++..|++.+ ++++|+++.++..+....... ....+.+.+.|...++ ++++||+|++..+++++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 146 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIE 146 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSC
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCC
Confidence 489999999999999998874 788888776554443322211 1123778888888877 456999999999998764
Q ss_pred C-ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 181 A-NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 181 ~-~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +...+++++.++|||||+|++...+.
T Consensus 147 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 147 PEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp GGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 3 44899999999999999999976544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=126.08 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=81.3
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEE
Q 010599 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 343 ~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~ 421 (506)
.++..+......+|||+|||+|.++..|++.. ...+|+++|.++.|++.+.++.. +.....-.+.++ .+++||+|++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 34444444556789999999999999998751 11479999999999999988731 122211123344 3489999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
..+|++. .++..+|.++.|+|||||+++|.+
T Consensus 102 ~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 102 NAVFQWV---PDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp ESCGGGS---TTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred eCchhhC---CCHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999855 478899999999999999999975
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=127.44 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||||||+|.++..+++. .++++|+++.++ +.+.++...+.+.+.|...+|+ +++||+|++..+++|
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~- 129 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMI-----EKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHW- 129 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGG-
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHH-----HHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhh-
Confidence 3459999999999999999876 478888876544 4444443456778889888887 579999999999866
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 180 GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
..++..+++++.|+|||||++++..+..
T Consensus 130 ~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 130 VKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 4678999999999999999999987543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=128.92 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=92.4
Q ss_pred CCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEE
Q 010599 78 GTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVI 152 (506)
Q Consensus 78 ~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~ 152 (506)
...+.......++.+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~ 144 (318)
T 2fk8_A 68 ELTLEEAQYAKVDLNLDKLDLK--PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVL-ASIDTNRSRQV 144 (318)
T ss_dssp TCCHHHHHHHHHHHHHTTSCCC--TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTSCCSSCEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCC--CcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEE
Confidence 3344445566667777777543 4459999999999999999876 4788888876664443332 22333 3677
Q ss_pred EEeccccCCCCCCCeeEEEEcCcccccC-CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 153 GVLGTIKMPYASRAFDMAHCSRCLIPWG-ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 153 ~~~d~~~lp~~~~sfDlV~~~~~l~~~~-~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
...|...+| ++||+|++..+++|+. ++...+++++.++|||||.+++..+..
T Consensus 145 ~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 145 LLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp EESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred EECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 778887775 7899999999998875 355899999999999999999986543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=122.17 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=84.4
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASR 165 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~ 165 (506)
.+.+.++.. ++.+|||||||+|.++..+++. .++++|+++. +++.++++.. .+.+...|...++++++
T Consensus 34 ~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 106 (243)
T 3bkw_A 34 ALRAMLPEV--GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAAGPDTGITYERADLDKLHLPQD 106 (243)
T ss_dssp HHHHHSCCC--TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTSCSSSEEEEECCGGGCCCCTT
T ss_pred HHHHhcccc--CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHH-----HHHHHHHhcccCCceEEEcChhhccCCCC
Confidence 355555432 3459999999999999999886 3677777654 4445554432 46788888888888889
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||+|++..+++|+ ++...+++++.++|||||+++++.+
T Consensus 107 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 107 SFDLAYSSLALHYV-EDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEecccccc-chHHHHHHHHHHhcCcCcEEEEEeC
Confidence 99999999998775 5689999999999999999999864
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=119.35 Aligned_cols=146 Identities=16% Similarity=0.068 Sum_probs=101.7
Q ss_pred CCChhhhhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----
Q 010599 321 GVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---- 396 (506)
Q Consensus 321 ~~~~~~f~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---- 396 (506)
|...+.|..+...-+..+.. .++..+......+|||+|||+|.++..|++.+ ...+|+++|.+++|++.|.++
T Consensus 11 g~~d~~f~~~g~~~~~~i~~--~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~ 87 (204)
T 3e05_A 11 IDDDEFATAKKLITKQEVRA--VTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKF 87 (204)
T ss_dssp CCGGGSCCCTTTSCCHHHHH--HHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCCcHHhccCCcCChHHHHH--HHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 44445555544432223322 23334444556789999999999999998753 125899999999999998875
Q ss_pred CccceeccccccCC-CCC--CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCc
Q 010599 397 GLIGIYHDWCEAFS-TYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRW 472 (506)
Q Consensus 397 g~~~~~~~~~~~~~-~~p--~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w 472 (506)
|+ ..+...+.++. .++ .+||+|++...+. ++..+|.++.|+|||||.+++.+.. ...+.+.+++++.+|
T Consensus 88 ~~-~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 88 VA-RNVTLVEAFAPEGLDDLPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp TC-TTEEEEECCTTTTCTTSCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred CC-CcEEEEeCChhhhhhcCCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 32 22222234432 222 7899999966553 6788999999999999999998654 567888888999998
Q ss_pred eEEE
Q 010599 473 DTKM 476 (506)
Q Consensus 473 ~~~~ 476 (506)
++..
T Consensus 161 ~~~~ 164 (204)
T 3e05_A 161 MVEV 164 (204)
T ss_dssp EEEE
T ss_pred ceeE
Confidence 6543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=121.69 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=79.0
Q ss_pred EEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC-C
Q 010599 105 TALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG-A 181 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~-~ 181 (506)
+|||||||+|.++..+++. .++++|+++.++..+..... ..+..+.+...|...+++++++||+|+++. .|+. .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQ-EKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHH-HHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHH-hcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHH
Confidence 8999999999999999987 47888888766654443333 335578888888888888889999999964 3442 3
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 182 NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 182 ~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+...+++++.++|||||++++..+..
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 34789999999999999999987544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=124.22 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=91.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc------ceecccc-ccCCCCCCceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI------GIYHDWC-EAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~------~~~~~~~-~~~~~~p~s~D~v~~~~~~ 425 (506)
..+|||+|||||.++..|++.+. ..|+++|.|++|++.|.++... ..+.... ++++. ..||.+.++.+|
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~ 113 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSF 113 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSS
T ss_pred CCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEh
Confidence 45899999999999999998753 3899999999999998775321 1111111 33332 124555555555
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEe-------------------Ch---hhHHHHHHHHhcCCceEEEeecC--C
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRD-------------------EV---DEIIKVKKIVGGMRWDTKMVDHE--D 481 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d-------------------~~---~~~~~~~~~~~~~~w~~~~~~~~--~ 481 (506)
.. +..+|.|+.|+|||||++++.. .. ...+++.+++.+.+|++...+.. .
T Consensus 114 ~~------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~ 187 (232)
T 3opn_A 114 IS------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIK 187 (232)
T ss_dssp SC------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSC
T ss_pred hh------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCC
Confidence 42 2669999999999999999851 11 14567888899999997755433 1
Q ss_pred -CCCCCeEEEEEEec
Q 010599 482 -GPLVPEKILVAVKQ 495 (506)
Q Consensus 482 -~~~~~~~~l~~~k~ 495 (506)
...+.++++.++|+
T Consensus 188 g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 188 GGAGNVEFLVHLLKD 202 (232)
T ss_dssp BTTTBCCEEEEEEES
T ss_pred CCCCCHHHHHHHhhc
Confidence 12246888888884
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=122.76 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~~s 166 (506)
..+.+.+... .++.+|||||||+|.++..+++. .++++|+++. +++.+++.+ ..+.+...|...+ +++++
T Consensus 35 ~~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~-----~~~~a~~~~~~~~~~~~~d~~~~-~~~~~ 107 (218)
T 3ou2_A 35 PAALERLRAG-NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAE-----MIAEAGRHGLDNVEFRQQDLFDW-TPDRQ 107 (218)
T ss_dssp HHHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHH-----HHHHHGGGCCTTEEEEECCTTSC-CCSSC
T ss_pred HHHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH-----HHHHHHhcCCCCeEEEecccccC-CCCCc
Confidence 3444444321 23459999999999999999886 4778888764 444444455 5578888888877 78899
Q ss_pred eeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 167 FDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|+|+.+++|+.+. ...+++++.++|||||.+++..+
T Consensus 108 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 108 WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999999886432 17899999999999999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.9e-12 Score=118.60 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=81.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH----HHHhcCccc-eecccccc--CCCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLIG-IYHDWCEA--FSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~-~~~~~~~~--~~~~p~s~D~v~~~~ 423 (506)
.+..+|||+|||+|.++..|++... ...|+++|.|+.|++ .|.++.-+. ...+..+. +..++++||+|+++.
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 134 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 134 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec
Confidence 3456899999999999998887422 247999999997654 444442111 11111111 012348999999962
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh------hhHHH-----HHHHHhcCCceEEEeecCCCCCCCeEEEEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------DEIIK-----VKKIVGGMRWDTKMVDHEDGPLVPEKILVA 492 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------~~~~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~ 492 (506)
.+......+|.|+.|+|||||+|+|.-.. ...++ ++. +++. +++........-...-+++++
T Consensus 135 -----~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-l~~~-f~~~~~~~~~p~~~~h~~~~~ 207 (210)
T 1nt2_A 135 -----AQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKE-MEGD-FKIVKHGSLMPYHRDHIFIHA 207 (210)
T ss_dssp -----CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHH-HHTT-SEEEEEEECTTTCTTEEEEEE
T ss_pred -----cChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHH-HHhh-cEEeeeecCCCCCCCcEEEEE
Confidence 12233445699999999999999996311 11122 333 5555 885533222111124567777
Q ss_pred Ee
Q 010599 493 VK 494 (506)
Q Consensus 493 ~k 494 (506)
+|
T Consensus 208 ~~ 209 (210)
T 1nt2_A 208 YR 209 (210)
T ss_dssp EE
T ss_pred Ec
Confidence 65
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.4e-12 Score=114.77 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=86.0
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~---~~~~~~d~~~lp 161 (506)
...+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+..... ..+.+ +.+...|... +
T Consensus 39 ~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~ 114 (194)
T 1dus_A 39 KGTKILVENVVVD--KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIK-LNNLDNYDIRVVHSDLYE-N 114 (194)
T ss_dssp HHHHHHHHHCCCC--TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-HTTCTTSCEEEEECSTTT-T
T ss_pred hHHHHHHHHcccC--CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHH-HcCCCccceEEEECchhc-c
Confidence 4445566666443 4559999999999999999876 48899998876655444333 33443 6777777765 4
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++++||+|+++..+++...+...+++++.++|+|||.+++..+..
T Consensus 115 ~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 4577899999988764422334789999999999999999987644
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-12 Score=116.67 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=84.6
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c-cceeccccccCCCCCCceeEEEEcccccccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~ 429 (506)
+|||+|||+|.++..|++.+ .+|+++|.++.|++.|.++. . +.....-.+.++..+++||+|+++ +.+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~- 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHL- 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCC-
T ss_pred CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcC-
Confidence 89999999999999999875 48999999999999988772 2 111111112233223899999984 3333
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEeCh-----------------hhHHHHHHHHhcCCceEEEe
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRDEV-----------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
+..++..+|.++.|+|||||.+++.+.. -..+++++++. +|++...
T Consensus 106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 106 PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 3346778999999999999999997521 14578888888 8886643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=121.01 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
....+.+.+.+.+ .++.+|||+|||+|.++..+++. .++++|+++.++..+..... ....+.+.+.|...+
T Consensus 28 ~~~~~~~~l~~~~----~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~--~~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 28 DFSSFRALLEPEL----RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA--HVPQLRWETMDVRKL 101 (215)
T ss_dssp CHHHHHHHHGGGC----CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTT--TCTTCEEEECCTTSC
T ss_pred CHHHHHHHHHHhc----CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcc--cCCCcEEEEcchhcC
Confidence 3455656666665 23458999999999999999876 48889988765544332222 123577888898888
Q ss_pred CCCCCCeeEEEEcCcccccC--------------CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 161 PYASRAFDMAHCSRCLIPWG--------------ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~--------------~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++++++||+|++..++.++. .+...+++++.++|||||.+++.++..
T Consensus 102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 98889999999988775543 133789999999999999999987654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=121.08 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=80.4
Q ss_pred CCEEEEECCCCChhH-HHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 103 VRTALDTGCGVASWG-AYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~-~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++ ..++.. .++++|+++.++..+.... ...+..+.+.+.|...+++++++||+|++..+++|+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 102 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFS-RENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHM 102 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHH-HHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-HhcCCceEEEECchhhCCCCCCceeEEEEcChHHhC
Confidence 458999999999874 445444 4889999987775554333 333456778888998999988999999999988886
Q ss_pred C-CChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 180 G-ANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~-~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. .+...+++++.++|||||++++..+
T Consensus 103 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 103 RKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4 3457999999999999999999763
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=118.76 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-YASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp-~~~~sfDlV~~~~~l~~ 178 (506)
++.+|||+|||+|.++..|++. .|+++|+++.++..+...........+.+...+...++ +.+++||+|+++....+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~ 101 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLP 101 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence 4569999999999999999986 48999999887765554444332234666665555543 45788999998743322
Q ss_pred c--------CCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 179 W--------GANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 179 ~--------~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ..+...+++++.++|||||++++...
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 102 SADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp --------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 12225788999999999999999864
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=130.32 Aligned_cols=103 Identities=9% Similarity=-0.005 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCChhHHH----HhhC--Cc----EEEecCccchHHHHHHHHHHcCCC-e--EEEEeccccCC------C
Q 010599 102 TVRTALDTGCGVASWGAY----LWSR--NV----IAMSFAPRDSHEAQVQFALERGVP-A--VIGVLGTIKMP------Y 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~----L~~~--~v----~~vdis~~dl~~~~~~~a~~~~~~-~--~~~~~d~~~lp------~ 162 (506)
++.+|||||||+|.++.. ++.+ ++ +++|+|+.|+..+..+.+...+++ + .+...+...++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 456899999999976543 3321 33 889999888766554443322332 2 33344444433 6
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++++||+|+|..+++| .+++..+|+++.|+|||||+|++...
T Consensus 132 ~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp CCCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeee-cCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7889999999999977 46789999999999999999999753
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.6e-13 Score=126.74 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----ccee-ccc
Q 010599 332 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIY-HDW 405 (506)
Q Consensus 332 ~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~-~~~ 405 (506)
..|...+.+ .+...+. ....+|||||||+|.++.+|++.. ..+|+++|.++.|++.|+++.- +..+ .++
T Consensus 43 ~~we~~~m~--~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a 117 (236)
T 3orh_A 43 ERWETPYMH--ALAAAAS-SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW 117 (236)
T ss_dssp EGGGHHHHH--HHHHHHT-TTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH
T ss_pred HHHHHHHHH--HHHHhhc-cCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehH
Confidence 467654432 2222222 345789999999999999998864 3689999999999999988642 1111 122
Q ss_pred cccCCCCC-CceeEEEEcccccc--ccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 406 CEAFSTYP-RTYDLIHAHGLFSL--YKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 406 ~~~~~~~p-~s~D~v~~~~~~~~--~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.+-.+.++ ++||.|+.+.++.. ..+..+.+.++.|+.|+|||||.|++.+
T Consensus 118 ~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 118 EDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp HHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred HhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 22233344 89999987665543 2344467889999999999999999853
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=128.73 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=75.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----Cccceecccccc---CCCCC------Cce
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDWCEA---FSTYP------RTY 416 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~~~~---~~~~p------~s~ 416 (506)
.+..+|||+|||+|.++..|++.-....+|+++|.|+.|++.|.++ +....+...+.+ ++..+ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 3567899999999999999994100136899999999999999886 222222222333 33223 699
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
|+|++..+|++. ++..+|.++.|+|||||.|+|
T Consensus 115 D~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 115 DMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 999999999854 889999999999999999999
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=134.01 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=90.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---------C-c----cceeccccccC------CC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---------G-L----IGIYHDWCEAF------ST 411 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---------g-~----~~~~~~~~~~~------~~ 411 (506)
...+|||+|||+|.++..|++.......|+++|.++.|++.|.++ | + +.....-.+.+ +.
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 346899999999999988876311125899999999999999987 4 1 11221112222 33
Q ss_pred CCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-----------------------hhHHHHHHHHh
Q 010599 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------------------DEIIKVKKIVG 468 (506)
Q Consensus 412 ~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-----------------------~~~~~~~~~~~ 468 (506)
.+++||+|+++.+|.+.. ++..+|.|+.|+|||||+|+|.+.. -..+++.+++.
T Consensus 163 ~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 239 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA 239 (383)
T ss_dssp CTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred CCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence 348999999999998554 6889999999999999999997532 12378899999
Q ss_pred cCCceEE
Q 010599 469 GMRWDTK 475 (506)
Q Consensus 469 ~~~w~~~ 475 (506)
+.+|+..
T Consensus 240 ~aGF~~v 246 (383)
T 4fsd_A 240 EAGFRDV 246 (383)
T ss_dssp HTTCCCE
T ss_pred HCCCceE
Confidence 9999743
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=117.12 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=93.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccccCCC-C-CCceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFST-Y-PRTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~~~~-~-p~s~D~v 419 (506)
.+......+|||+|||+|.++..+++.+ .+|+++|.++.+++.+.++ ++.. .+...+.++.. . +++||+|
T Consensus 47 ~~~~~~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v 123 (194)
T 1dus_A 47 NVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKI 123 (194)
T ss_dssp HCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEE
T ss_pred HcccCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEE
Confidence 3344456789999999999999998863 5899999999999988876 2211 02222333322 2 3799999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
+++..+++. ...+..+|.++.|+|||||.+++.+... ...++.+.+++.-+.+...... ...+++.++|
T Consensus 124 ~~~~~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~k 193 (194)
T 1dus_A 124 ITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp EECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred EECCCcccc--hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecC----CcEEEEEEee
Confidence 998777631 2356789999999999999999987653 3344555554443333343333 2456666665
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=126.83 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=79.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHc-C------------------
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALER-G------------------ 147 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~-~------------------ 147 (506)
+.+.+++.....++.+|||||||+|.++..++.. .|+++|+|+.++..+........ .
T Consensus 43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~ 122 (263)
T 2a14_A 43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 122 (263)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCc
Confidence 4444444323345568999999999887776655 38999999988765543221100 0
Q ss_pred ----------CCeE-EEEecccc-CCC---CCCCeeEEEEcCcccccCCC---hHHHHHHHHHhcCCCeEEEEEc
Q 010599 148 ----------VPAV-IGVLGTIK-MPY---ASRAFDMAHCSRCLIPWGAN---DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 ----------~~~~-~~~~d~~~-lp~---~~~sfDlV~~~~~l~~~~~~---~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+. +.+.|+.. .|+ ..++||+|+|+.+++|...+ ...+++++.|+|||||+|++++
T Consensus 123 ~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 123 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0122 66677765 344 35799999999999875433 3689999999999999999986
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=124.73 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||+|||+|.++..|++.+ ++++|+++.++..+... +...+..+.+...|...+++ +++||+|+|+.+++|+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNET-KEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 34589999999999999999874 78999988766544433 33445678888899988887 7899999999999876
Q ss_pred CCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 180 GAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 180 ~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.... ..+++++.++|||||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4332 689999999999999988754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=119.57 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=83.5
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
.++.+...++ +.+|||||||+|.++..++.. +++|+++.+ ++.+.++ .+.+...+...+++++++|
T Consensus 38 ~~~~l~~~~~-----~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~-----~~~a~~~--~~~~~~~d~~~~~~~~~~f 103 (219)
T 1vlm_A 38 ELQAVKCLLP-----EGRGVEIGVGTGRFAVPLKIK--IGVEPSERM-----AEIARKR--GVFVLKGTAENLPLKDESF 103 (219)
T ss_dssp HHHHHHHHCC-----SSCEEEETCTTSTTHHHHTCC--EEEESCHHH-----HHHHHHT--TCEEEECBTTBCCSCTTCE
T ss_pred HHHHHHHhCC-----CCcEEEeCCCCCHHHHHHHHH--hccCCCHHH-----HHHHHhc--CCEEEEcccccCCCCCCCe
Confidence 3344555543 458999999999999999887 888887644 4455554 4567778888889888999
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|+|++..+++|+ +++..+++++.++|+|||+++++.+..
T Consensus 104 D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 104 DFALMVTTICFV-DDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEEEEESCGGGS-SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred eEEEEcchHhhc-cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 999999999775 678999999999999999999987543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=118.21 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..++.. .++++|+++.++..+..+........+.+.+.|+..++ +++++||+|+++..+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 4568999999999999987776 38999999877765554443332235778888876653 457899999998876
Q ss_pred cccCCChHHHHHHHHH--hcCCCeEEEEEcCC
Q 010599 177 IPWGANDGRYMIEVDR--VLRPGGYWVLSGPP 206 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~r--vLkPGG~li~~~p~ 206 (506)
++..++...++.++.+ +|+|||++++..+.
T Consensus 124 ~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 124 NVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 4432445789999999 99999999998644
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=124.78 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=77.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceecccccc---CCC-CCCceeEEEEcc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEA---FST-YPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~---~~~-~p~s~D~v~~~~ 423 (506)
+..+|||+|||+|.++..|+..+. .+|+++|.++.|++.|.++. +...+...+.+ ++. .+++||+|++..
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 346899999999999988887542 38999999999999998872 11112222233 333 248999999999
Q ss_pred ccccc-cCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 424 LFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++++. .+..++..+|.++.|+|||||+++|...
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 88753 3445678899999999999999999754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=128.01 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH-------cCCCeEEEEeccccCC----CC--CC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE-------RGVPAVIGVLGTIKMP----YA--SR 165 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~-------~~~~~~~~~~d~~~lp----~~--~~ 165 (506)
++.+|||||||+|.++..+++. .++++|+++.++..+....... ....+.+.+.|...++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 3458999999999999999865 4899999987776655444332 1224678888887775 54 45
Q ss_pred CeeEEEEcCcccccCCC---hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 166 AFDMAHCSRCLIPWGAN---DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~---~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+||+|+|+.++++...+ ...++.++.++|||||+|+++++.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 99999999988553133 368999999999999999998764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=117.43 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||+|||+|.++..+++. .++++|+++. +++.++++...+.+...| +++++++||+|+++.+++|+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVI-----ALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDM 88 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHH-----HHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHH-----HHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcc
Confidence 3458999999999999999987 4777777654 444555445567777666 77888999999999999876
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 180 GANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++..+++++.++|||||++++...
T Consensus 89 -~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 89 -DDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 5789999999999999999999864
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-12 Score=128.85 Aligned_cols=124 Identities=15% Similarity=0.072 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
.+.+.+++.+.+.+.....++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+..+.+...|....
T Consensus 214 ~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~-n~~~~~~~v~~~~~D~~~~ 292 (381)
T 3dmg_A 214 PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK-GLEANALKAQALHSDVDEA 292 (381)
T ss_dssp HHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTT
T ss_pred HHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEcchhhc
Confidence 44566666666655322234569999999999999999987 48899998876654443 3344566788888898888
Q ss_pred CCCCCCeeEEEEcCccccc----CCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 161 PYASRAFDMAHCSRCLIPW----GANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~----~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.++++||+|+|+..+++. ..+...++.++.++|||||.++++.++.
T Consensus 293 ~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 293 LTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp SCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 7777899999999887541 1223689999999999999999987654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=123.38 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=77.7
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCC--CCCce
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFST--YPRTY 416 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~--~p~s~ 416 (506)
...++......+..+|||+|||+|.++..|++.+ .+|+++|.|+.|++.|.++.. .+ .+...+.++.. ++++|
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 106 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCc
Confidence 3444443333445789999999999999999876 489999999999999887621 00 11122233322 34899
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|+|.+.....+..+..++..+|.++.|+|||||.+++.
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99998633322223345778999999999999999974
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=112.49 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=87.8
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCC-CceeEEEEcc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYP-RTYDLIHAHG 423 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p-~s~D~v~~~~ 423 (506)
.....+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ |+ ..++..+.++. .++ ++||+|+++.
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~i~~~~ 108 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDKLEFNKAFIGG 108 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGGCCCSEEEECS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccCCCCcEEEECC
Confidence 3445689999999999999998843 6899999999999988876 22 11221222221 233 7999999966
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEe
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~ 477 (506)
+ .++..+|.++.|+ |||.+++.+. .....++.+.+++.+|++..+
T Consensus 109 ~-------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 109 T-------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp C-------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred c-------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 5 4678899999999 9999999884 456778888899999987755
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.31 E-value=9e-12 Score=119.31 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=88.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..+.+.+.+.++ ++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+..+.+...|...++++
T Consensus 21 ~~~~~~~~~~~~----~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~- 94 (243)
T 3d2l_A 21 PEWVAWVLEQVE----PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKA-METNRHVDFWVQDMRELELP- 94 (243)
T ss_dssp HHHHHHHHHHSC----TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCGGGCCCS-
T ss_pred HHHHHHHHHHcC----CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhh-hhcCCceEEEEcChhhcCCC-
Confidence 445566667663 2358999999999999999876 5889999887765554333 33445678888898888876
Q ss_pred CCeeEEEEcC-cccccCC--ChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 165 RAFDMAHCSR-CLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~-~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|++.. +++|+.. +...+++++.++|||||.+++..+.
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 7899999986 7777532 2368999999999999999998654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=124.81 Aligned_cols=101 Identities=12% Similarity=-0.037 Sum_probs=78.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--------CceeEEEEcc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--------RTYDLIHAHG 423 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--------~s~D~v~~~~ 423 (506)
...+|||+|||+|.++..|++.+. +|+++|.++.|++.+.++.....+...+.++..++ ..||+|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 345799999999999999988653 89999999999999988753222333344444322 2499999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++++.. ..+...+|.++.|+|||||+++|.+.
T Consensus 133 ~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 133 GFHHIP-VEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSTTSC-GGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 998664 34678999999999999999998763
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-12 Score=124.71 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=79.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCC--CCceeEEEEcccc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~--p~s~D~v~~~~~~ 425 (506)
..+..+|||+|||+|.++..|++.-....+|+++|.++.|++.|.++- ....+...+.++..+ +++||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 345578999999999999999875211258999999999999988762 111222223333332 5899999999998
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+. .+...+|.++.|+|||||++++.+..
T Consensus 100 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHM---TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcC---CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 854 47789999999999999999997754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=125.42 Aligned_cols=113 Identities=13% Similarity=0.038 Sum_probs=81.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc--C
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--M 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~--l 160 (506)
..+.+.+++.+. ..+.+|||||||+|..+..+++. .++++|+++.++..+. +.+...+....+...+... .
T Consensus 47 ~~~m~~~a~~~~---~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~ 122 (236)
T 3orh_A 47 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhc---cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEeehHHhhcc
Confidence 455566666663 24558999999999999999886 4789999886664433 3344455566666666643 3
Q ss_pred CCCCCCeeEEEEc-----CcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 161 PYASRAFDMAHCS-----RCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 161 p~~~~sfDlV~~~-----~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++++++||.|+.- ..+.|+ .+...+++++.|+|||||+|++.
T Consensus 123 ~~~~~~FD~i~~D~~~~~~~~~~~-~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 123 TLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccCCceEEEeeeecccchhhh-cchhhhhhhhhheeCCCCEEEEE
Confidence 5788999999853 333332 34578999999999999999885
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=116.74 Aligned_cols=138 Identities=13% Similarity=0.017 Sum_probs=97.3
Q ss_pred CCceEEeecCc-ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCC-CceeEEEEc
Q 010599 352 RYRNIMDMNAG-FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYP-RTYDLIHAH 422 (506)
Q Consensus 352 ~~~~vLD~gcG-~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p-~s~D~v~~~ 422 (506)
+..+|||+||| +|.++..|+... ..+|+++|.++.|++.|.++ |+ .+...+.+ +..++ ++||+|.++
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEEC
Confidence 35689999999 999999998752 36899999999999988765 32 12222233 43444 899999997
Q ss_pred cccccccC----------------CCCHHHHHHHHhhcccCCcEEEEEeC--hhhHHHHHHHHhcCCceEEEeecCCCCC
Q 010599 423 GLFSLYKD----------------KCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGGMRWDTKMVDHEDGPL 484 (506)
Q Consensus 423 ~~~~~~~~----------------~~~~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 484 (506)
..+..... ...+..+|.++.|+|||||++++.-. ....+++.+.+++.+|++..+....|.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~- 209 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT- 209 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-
Confidence 66653221 11146799999999999999999533 356788889999999998877665544
Q ss_pred CCeEEEEEEe
Q 010599 485 VPEKILVAVK 494 (506)
Q Consensus 485 ~~~~~l~~~k 494 (506)
.--.+|..+|
T Consensus 210 ~~~~~l~f~~ 219 (230)
T 3evz_A 210 RWRHSLIFFK 219 (230)
T ss_dssp -CEEEEEEEC
T ss_pred eEEEEEEEec
Confidence 2344444444
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-12 Score=131.04 Aligned_cols=102 Identities=20% Similarity=0.131 Sum_probs=82.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc----C----CCeEEEEeccccC------CC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER----G----VPAVIGVLGTIKM------PY 162 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~----~----~~~~~~~~d~~~l------p~ 162 (506)
++.+|||||||+|.++..|++. .++++|+++.++..+..+..... | ..+.+.+.|+..+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 4569999999999999888764 48899998866655443332210 3 4688888888876 89
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++||+|+++.+++|+ +++..+|+++.|+|||||+|+++.
T Consensus 163 ~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLS-TNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEEEEccchhcC-CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999999999998764 678999999999999999999975
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=122.74 Aligned_cols=114 Identities=14% Similarity=0.061 Sum_probs=82.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC--
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-- 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l-- 160 (506)
..+++.+...+. .++.+|||||||+|.++..|++. .++++|+++.++..+.. .+...+..+.+.+.+...+
T Consensus 47 ~~~~~~l~~~~~---~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~ 122 (236)
T 1zx0_A 47 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHhhcC---CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEecCHHHhhc
Confidence 455566666552 23458999999999999999875 47889998866644443 2223345577888888877
Q ss_pred CCCCCCeeEEEE-cCcccccCC----ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 PYASRAFDMAHC-SRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~-~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++++||+|++ .+.+ +... +...+++++.|+|||||+|++..
T Consensus 123 ~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 123 TLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 888999999999 5553 2111 11467999999999999999864
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=112.90 Aligned_cols=131 Identities=11% Similarity=0.106 Sum_probs=93.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-CCC-CceeEEEEccccccccC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYP-RTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-~~p-~s~D~v~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+ +|+++|.++.|++. ...+ ... +.++. .++ ++||+|.++..|.....
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~-~~~---~~d~~~~~~~~~fD~i~~n~~~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGG-NLV---RADLLCSINQESVDVVVFNPPYVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSS-CEE---ECSTTTTBCGGGCSEEEECCCCBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCC-eEE---ECChhhhcccCCCCEEEECCCCccCCc
Confidence 3489999999999999999875 89999999999988 2222 222 23322 233 89999999888774332
Q ss_pred C------CCHHHHHHHHhhcccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 431 K------CNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 431 ~------~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
. .+...++.++.+.| |||.+++... ....+++.+++++.+|+...+.......+.-+.+-..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~~~ 163 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIKGEK 163 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEEEC
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEEec
Confidence 2 12346889999999 9999999764 35678899999999999776555433333344444433
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-12 Score=116.15 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=95.0
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCC---CCCceeEEEEcc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFST---YPRTYDLIHAHG 423 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~---~p~s~D~v~~~~ 423 (506)
.-+...+|||+|||. +.+|.|+.|++.|.++.. +.....-.+.++. .+++||+|+|..
T Consensus 9 g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp TCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC
Confidence 344567899999996 238999999999998841 2222222244554 348999999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------hHHHHHHHHhcCCceEEEeecCC------------
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKMVDHED------------ 481 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------~~~~~~~~~~~~~w~~~~~~~~~------------ 481 (506)
++++.. .++..+|.|+.|+|||||+|++.+... ..+++.+.+++.++ +.+.+...
T Consensus 72 ~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~ 148 (176)
T 2ld4_A 72 VPGSTT--LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVR 148 (176)
T ss_dssp STTCCC--CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHH
T ss_pred hhhhcc--cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHH
Confidence 998651 356889999999999999999975432 26788889999999 55433211
Q ss_pred ---CCC---CCeEEEEEEecccccCCC
Q 010599 482 ---GPL---VPEKILVAVKQYWVASGN 502 (506)
Q Consensus 482 ---~~~---~~~~~l~~~k~~w~~~~~ 502 (506)
|.. ....+++|+|+-|..+++
T Consensus 149 ~~~g~~~~~~~~~~~~a~Kp~~~~gs~ 175 (176)
T 2ld4_A 149 EHLGHESDNLLFVQITGKKPNFEVGSS 175 (176)
T ss_dssp HHTCCCCSSEEEEEEEEECCCSSCCSC
T ss_pred HHhcccCCceEEEEEeccCCcccccCC
Confidence 111 126789999998877653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=120.04 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=74.0
Q ss_pred CceEEeecCcccHH-HHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-cceeccccccCCCCCCceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGF-AAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~-~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.+ ...+...+ .+|+++|.++.|++.|.++ +. +.....-.+.++..+++||+|++..++.
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 46899999999998 45555554 4899999999999988876 21 1222111223343348999999998888
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|.. ..++..+|.++.|+|||||.+++.+
T Consensus 101 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 101 HMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 653 3467889999999999999999965
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.2e-12 Score=118.36 Aligned_cols=104 Identities=26% Similarity=0.327 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC------CeEEEEeccccCCCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV------PAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~------~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
++.+|||||||+|.++..+++. .++++|+++.++..+.. .+...+. .+.+...+...+++++++||+|++.
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAET-AARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 3458999999999999999987 47888887754433322 1122233 3577888888999989999999999
Q ss_pred CcccccCCChH---HHHHHHHHhcCCCeEEEEEcCCC
Q 010599 174 RCLIPWGANDG---RYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 ~~l~~~~~~~~---~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.+++|+ .++. .+++++.++|||||++++..+..
T Consensus 109 ~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 109 AFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp SCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred chhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 999775 4455 89999999999999999987544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-12 Score=126.09 Aligned_cols=115 Identities=14% Similarity=0.065 Sum_probs=85.7
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC----CCeEEEEeccccCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG----VPAVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~----~~~~~~~~d~~~lp 161 (506)
....+.+.+... +.+|||||||+|.++..|++. .++++|+++.++..+..+. ...+ ..+.+.+.|+..++
T Consensus 71 ~~~~~~~~~~~~---~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTGPV---SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRL-AEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHCCC---CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHH-HTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhCCC---CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-hhcccccccceEEEeCchhcCC
Confidence 344555555322 237999999999999999987 5899999887665444333 2223 45788999999988
Q ss_pred CCCCCeeEEEEcCcccccCCC--hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 162 YASRAFDMAHCSRCLIPWGAN--DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~--~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +++||+|+|+....|+.+. ...+|+++.++|||||+|++.++..
T Consensus 147 ~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 147 L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 7 6899999987554454442 3789999999999999999987655
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=118.77 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=79.1
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||+|||+|.++..|++.+ ++++|+++.++..+... +...+..+.+.+.|...++++ ++||+|+|.....++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence 34599999999999999999874 88999988777554433 334456788888898888865 689999987543333
Q ss_pred CC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 180 GA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. +...+++++.++|||||.+++..+
T Consensus 119 ~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 119 FDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 22 337899999999999999998765
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=115.55 Aligned_cols=132 Identities=8% Similarity=0.030 Sum_probs=92.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC--CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP--RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p--~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++..|+... ...+|+++|.++.+++.+.++ ++.. +...+.++..++ ++||+|++..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~--- 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRA--- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSC---
T ss_pred CCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCccCCcCEEEEec---
Confidence 3589999999999999888641 125899999999999988775 3311 233334444333 7999999843
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEee--cCCCCCCCeEEEEEEec
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD--HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~l~~~k~ 495 (506)
..++..++.++.++|||||++++.......++++.+++ +|+..... ..........+++++|+
T Consensus 141 ----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 141 ----FASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ----SSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ----cCCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 24578899999999999999999877666777877766 88855321 11111234566666663
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=119.44 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=108.9
Q ss_pred hhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cce
Q 010599 328 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGI 401 (506)
Q Consensus 328 ~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~ 401 (506)
....+.|..++..-..++..+......+|||||||+|..+..|+... ....|+++|.++.|+.+|.+. |+ +..
T Consensus 56 ~~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~ 134 (249)
T 3g89_A 56 RGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARA 134 (249)
T ss_dssp -CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred CCHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEE
Confidence 34456676666544444443333456789999999999988887531 125899999999999988775 33 223
Q ss_pred eccccccCCC---CCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC---hhhHHHHHHHHhcCCceEE
Q 010599 402 YHDWCEAFST---YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE---VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 402 ~~~~~~~~~~---~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~---~~~~~~~~~~~~~~~w~~~ 475 (506)
++.-.++++. ++++||+|.|.. ..++..++.++.|+|||||++++-.. .+.+..++..++.++|.+.
T Consensus 135 ~~~d~~~~~~~~~~~~~fD~I~s~a-------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 135 LWGRAEVLAREAGHREAYARAVARA-------VAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLG 207 (249)
T ss_dssp EECCHHHHTTSTTTTTCEEEEEEES-------SCCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEE
T ss_pred EECcHHHhhcccccCCCceEEEECC-------cCCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEE
Confidence 3332344443 348999999843 24678899999999999999998654 3455666777888899865
Q ss_pred Eeec--CCCCCCCeEEEEEEeccccc
Q 010599 476 MVDH--EDGPLVPEKILVAVKQYWVA 499 (506)
Q Consensus 476 ~~~~--~~~~~~~~~~l~~~k~~w~~ 499 (506)
.... ..+......+++.+|.-.++
T Consensus 208 ~~~~~~~p~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 208 EVLALQLPLSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp EEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EEEEeeCCCCCCcEEEEEEEeCCCCC
Confidence 3322 12222345677777765555
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=126.51 Aligned_cols=140 Identities=10% Similarity=0.163 Sum_probs=99.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CCCceeEEEEc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YPRTYDLIHAH 422 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p~s~D~v~~~ 422 (506)
.+.++|||||||+|.++..|++.. ....++++|. +.|++.|.++ |+...+...+.++.. +|++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 346789999999999999998731 1258999999 7999998876 332223333344433 46899999999
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCc
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRW 472 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w 472 (506)
.+|+++.+ .+...+|.++.|+|||||+|+|.|..- ..+++++++++.++
T Consensus 256 ~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 256 QFLDCFSE-EEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL 334 (363)
T ss_dssp SCSTTSCH-HHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred chhhhCCH-HHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence 99985441 134578999999999999999966310 35678889999999
Q ss_pred eEEEeecCCCCCCCeEEEEEEec
Q 010599 473 DTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+...+....|. ...++.++|.
T Consensus 335 ~~v~~~~~~g~--~~svi~~~~~ 355 (363)
T 3dp7_A 335 EVEEIQDNIGL--GHSILQCRLK 355 (363)
T ss_dssp EESCCCCCBTT--TBEEEEEEEC
T ss_pred eEEEEEeCCCC--CceEEEEeec
Confidence 95543322222 4566666664
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=129.51 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=80.1
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC-------------------
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG------------------- 147 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~------------------- 147 (506)
.+.+.+......+.+|||||||+|.++..|+.+ .++++|+++.++..+.........
T Consensus 35 ~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (292)
T 3g07_A 35 GRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGE 114 (292)
T ss_dssp GGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------
T ss_pred HHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 344444322224569999999999999999876 488999988766554433211100
Q ss_pred ---------------------------------------CCeEEEEeccccCC-----CCCCCeeEEEEcCcccccC---
Q 010599 148 ---------------------------------------VPAVIGVLGTIKMP-----YASRAFDMAHCSRCLIPWG--- 180 (506)
Q Consensus 148 ---------------------------------------~~~~~~~~d~~~lp-----~~~~sfDlV~~~~~l~~~~--- 180 (506)
..+.+...|....+ +.+++||+|+|..+++|+.
T Consensus 115 ~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~ 194 (292)
T 3g07_A 115 EGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNW 194 (292)
T ss_dssp ---------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHH
T ss_pred cccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcC
Confidence 24667777765433 5678999999999885542
Q ss_pred C--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 181 A--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 181 ~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +...+++++.++|||||+|++...
T Consensus 195 ~~~~~~~~l~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 195 GDEGLKRMFRRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 1 347899999999999999999754
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.8e-12 Score=115.47 Aligned_cols=142 Identities=12% Similarity=0.104 Sum_probs=103.2
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC-CCCCCc
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF-STYPRT 415 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~-~~~p~s 415 (506)
|...+..+. ...+|||+|||+|.+|..+....--+ .|+++|.++.|++++.++. +...+.. ++.. ...+.+
T Consensus 40 Y~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~-~d~~~~~~~~~ 115 (200)
T 3fzg_A 40 YTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF-LNKESDVYKGT 115 (200)
T ss_dssp HHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE-ECCHHHHTTSE
T ss_pred HHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE-ecccccCCCCC
Confidence 444444453 36689999999999999997653233 9999999999999998862 2212211 1111 124589
Q ss_pred eeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe--Ch---------hhHHHHHHHHhcCCceEEEeecCCCCC
Q 010599 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD--EV---------DEIIKVKKIVGGMRWDTKMVDHEDGPL 484 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--~~---------~~~~~~~~~~~~~~w~~~~~~~~~~~~ 484 (506)
||+|.+..+++++.++.. ++.++.+.|||||.+|--+ .+ .+...+++.+..=.|.+...+..
T Consensus 116 ~DvVLa~k~LHlL~~~~~---al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~---- 188 (200)
T 3fzg_A 116 YDVVFLLKMLPVLKQQDV---NILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG---- 188 (200)
T ss_dssp EEEEEEETCHHHHHHTTC---CHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET----
T ss_pred cChhhHhhHHHhhhhhHH---HHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC----
Confidence 999999999998754433 7779999999999999977 22 17788888889999998877665
Q ss_pred CCeEEEEEEe
Q 010599 485 VPEKILVAVK 494 (506)
Q Consensus 485 ~~~~~l~~~k 494 (506)
.|.+-+.+|
T Consensus 189 -nEl~y~~~~ 197 (200)
T 3fzg_A 189 -NELVYITSG 197 (200)
T ss_dssp -TEEEEEECC
T ss_pred -ceEEEEEec
Confidence 455555554
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=123.91 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=73.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccC--CCCCCceeEEEE-cc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAF--STYPRTYDLIHA-HG 423 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~--~~~p~s~D~v~~-~~ 423 (506)
...+|||+|||+|.++..|++.+ ..+|+++|.|++|++.|.++.- +..++.-.+++ +..+++||+|++ ..
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 45689999999999999998754 2489999999999999988641 11111111223 333489999999 44
Q ss_pred ccc-cccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 424 LFS-LYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 424 ~~~-~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.+. +..+....+.+|.|+.|+|||||+|++.+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 432 122233455789999999999999998653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=118.80 Aligned_cols=142 Identities=13% Similarity=0.182 Sum_probs=98.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc---ceeccccccCC-CC-CCceeEEEEc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFS-TY-PRTYDLIHAH 422 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~---~~~~~~~~~~~-~~-p~s~D~v~~~ 422 (506)
+..+|||+|||+|.++..|++.+.. +|+++|.++.|++.|.++ ++. ..++.-...++ .+ +++||+|.++
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 4568999999999999999987532 899999999999988775 321 22211112222 23 4899999997
Q ss_pred cccccc-----------------cCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeec---CCC
Q 010599 423 GLFSLY-----------------KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH---EDG 482 (506)
Q Consensus 423 ~~~~~~-----------------~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~---~~~ 482 (506)
.-|... ...++++.++.++.|+|||||++++.-......++...+.+.+|....+.. ..+
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 206 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPRSD 206 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEEEEEESSTT
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEEEEeecCCC
Confidence 555322 001345689999999999999999987777788888889999998663322 223
Q ss_pred CCCCeEEEEEEec
Q 010599 483 PLVPEKILVAVKQ 495 (506)
Q Consensus 483 ~~~~~~~l~~~k~ 495 (506)
......++.++|.
T Consensus 207 ~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 207 REANTVLVEGIKD 219 (259)
T ss_dssp SCCSEEEEEEEET
T ss_pred CCcEEEEEEEEeC
Confidence 3234566666663
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-12 Score=121.63 Aligned_cols=127 Identities=15% Similarity=0.102 Sum_probs=96.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-CCceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-PRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++..+++.+. +|+++|.++.+++.|.++ ++. ++..+.++.. + +++||+|+++..++
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEEECCcHH
Confidence 46899999999999999988763 899999999999998875 221 2222222221 3 37999999965443
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.+..++.++.|+|||||++++++.. ...+.+.+.+++.+|++...... +.+..++++|
T Consensus 196 ------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~l~~~k 254 (254)
T 2nxc_A 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred ------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc----CCeEEEEEEC
Confidence 2568999999999999999998654 46788999999999997654443 2577888776
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.5e-12 Score=114.19 Aligned_cols=119 Identities=15% Similarity=0.221 Sum_probs=88.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CC--CceeEEEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YP--RTYDLIHA 421 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p--~s~D~v~~ 421 (506)
......+|||+|||+|.++..+++.. .+|+++|.++.+++.+.++ ++...+...+.++.. ++ .+||+|++
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 106 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVV 106 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEE
Confidence 33455689999999999999998875 5899999999999988874 221111111222211 22 58999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEE
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~ 476 (506)
+.++. .+..+|.++.|+|||||.+++.+.. ....++.+++.+.+|++..
T Consensus 107 ~~~~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 107 GGSGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp SCCTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred CCchH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence 76654 4688999999999999999998754 4667788888888886543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=116.23 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010599 102 TVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
++.+|||||||+|.++..++ ..++++|+++. .+.+...+...+|+++++||+|++..++ |+ .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-S
T ss_pred CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-cc-c
Confidence 34589999999999999885 57999999885 2345677888889989999999999988 43 6
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 182 NDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 182 ~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+...+++++.++|+|||++++..+.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 7799999999999999999998643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=117.50 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=75.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCC---CCCceeEEEEcccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFST---YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~---~p~s~D~v~~~~~~~~ 427 (506)
..+|||+|||+|.++..|++.+. +|+++|.++.|++.|.++.. ...+...+.++.. .+++||+|+++.++.+
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 56899999999999999998763 89999999999999887621 0111222333333 2379999999888442
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
. +..++..+|.++.|+|||||.+++.+..
T Consensus 116 ~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 F-EPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp C-CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred C-CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 2 2345678999999999999999998654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-12 Score=118.07 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=75.2
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCC-CCeeEEEEcCcc
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM---PYAS-RAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l---p~~~-~sfDlV~~~~~l 176 (506)
+.+|||||||+|.++..+++.+ ++++|+++ .+++.++++ ....+...+...+ ++.. ++||+|+|+.++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDR-----TLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFAL 126 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECchh
Confidence 3589999999999999999874 77777765 444555555 3455666666555 5544 459999999988
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 177 IPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ ..++..+++++.++|||||+|++.++..
T Consensus 127 ~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 127 L--HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp C--SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred h--hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 6 5677999999999999999999987543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.5e-11 Score=110.29 Aligned_cols=110 Identities=15% Similarity=-0.037 Sum_probs=81.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+..+........+.+...|........+
T Consensus 30 ~~~l~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 30 AVTLSKLRLQ--DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHTTCC--TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHcCCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 4455566443 3459999999999999999876 389999998777555544433322346777777755443446
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||+|++..++. +...+++++.++|||||.+++..+
T Consensus 108 ~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 108 DPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999987653 568999999999999999999864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=5.8e-12 Score=124.64 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=77.6
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHH----------------HcCC-
Q 010599 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFAL----------------ERGV- 148 (506)
Q Consensus 89 ~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~----------------~~~~- 148 (506)
++.+.+.+......+.+|||||||+|.+...++.. .|+++|+|+.++..+...... ..+.
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 44455554322224569999999999955444432 589999998777554432110 0110
Q ss_pred -------------CeEEEEecccc-CCC-----CCCCeeEEEEcCcccccCCC---hHHHHHHHHHhcCCCeEEEEEc
Q 010599 149 -------------PAVIGVLGTIK-MPY-----ASRAFDMAHCSRCLIPWGAN---DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 149 -------------~~~~~~~d~~~-lp~-----~~~sfDlV~~~~~l~~~~~~---~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...+...|+.. +|+ ++++||+|+|+.+++++..+ ...+|+++.|+|||||+|++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 13455567766 664 35679999999999775443 5899999999999999999974
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=135.52 Aligned_cols=121 Identities=15% Similarity=0.234 Sum_probs=91.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC-----cEEEecCccchHHHHHHHHHH-----cC-CCeEEEE
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN-----VIAMSFAPRDSHEAQVQFALE-----RG-VPAVIGV 154 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~-----v~~vdis~~dl~~~~~~~a~~-----~~-~~~~~~~ 154 (506)
...++.+.+.+... .+.+|||||||+|.++..|++.+ |+++|+++.++..+..+.... .+ ..+.+.+
T Consensus 707 eqRle~LLelL~~~--~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiq 784 (950)
T 3htx_A 707 KQRVEYALKHIRES--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784 (950)
T ss_dssp HHHHHHHHHHHHHS--CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEE
T ss_pred HHHHHHHHHHhccc--CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEE
Confidence 44455566665322 34599999999999999998763 789999887776655443322 12 3478889
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010599 155 LGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
+|+..+++++++||+|+|..+++|+.+.. ..+++++.++|||| .+++++|...+
T Consensus 785 GDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey 839 (950)
T 3htx_A 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF 839 (950)
T ss_dssp SCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred CchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence 99999999999999999999998875422 36899999999999 88888776544
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=117.29 Aligned_cols=141 Identities=10% Similarity=-0.029 Sum_probs=91.1
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCC----C--CCceeEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST----Y--PRTYDLIH 420 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~----~--p~s~D~v~ 420 (506)
+...+..+|||+|||+|.++..|++... ...|+++|.++.|++.+.++.- ...+...+.++.. . +.+||+|+
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence 3334456899999999999999987521 2479999999999998877531 1222222233322 2 27899998
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEE----eC-hh------hHHHHHHHHhcCCceEEEeecCCCCCCCeEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR----DE-VD------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKI 489 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~----d~-~~------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 489 (506)
.. ..+......+|.++.|+|||||.++|. .. .. ..++++ ++.+.++++......+.-..+..+
T Consensus 149 ~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~ 222 (230)
T 1fbn_A 149 ED-----VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVM 222 (230)
T ss_dssp EC-----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEE
T ss_pred Ee-----cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEE
Confidence 41 111222367899999999999999994 11 00 225677 778888886543322222234678
Q ss_pred EEEEec
Q 010599 490 LVAVKQ 495 (506)
Q Consensus 490 l~~~k~ 495 (506)
++++|+
T Consensus 223 v~~~k~ 228 (230)
T 1fbn_A 223 FVGIWE 228 (230)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 888874
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=117.98 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=82.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
..+.+.+.+.+ .++.+|||||||+|.++..|++. .++++|+++.++ +.++++...+.+...|...+++
T Consensus 28 ~~~~~~l~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~- 97 (239)
T 3bxo_A 28 SDIADLVRSRT----PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDML-----THARKRLPDATLHQGDMRDFRL- 97 (239)
T ss_dssp HHHHHHHHHHC----TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHH-----HHHHHHCTTCEEEECCTTTCCC-
T ss_pred HHHHHHHHHhc----CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHH-----HHHHHhCCCCEEEECCHHHccc-
Confidence 34444455444 23458999999999999999876 488888876544 4445444557788888888887
Q ss_pred CCCeeEEEEcC-cccccCC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 164 SRAFDMAHCSR-CLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 164 ~~sfDlV~~~~-~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++||+|+|.. +++|+.. +...+++++.++|||||.+++..+
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 67999999755 7766532 337899999999999999999853
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=121.81 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=78.2
Q ss_pred CCCEEEEECCCCChhHHHHh--hC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLW--SR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~--~~---~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..++ .. .++++|+++.++..+.... ...+.. +.+.+.|...++++ ++||+|+++.
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLA-AGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 45689999999999999985 22 4889999886664443332 223333 78888999999987 8999999999
Q ss_pred cccccCCChH---HHHHHHHHhcCCCeEEEEEc
Q 010599 175 CLIPWGANDG---RYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~~---~~l~e~~rvLkPGG~li~~~ 204 (506)
+++|+. ++. .+++++.++|||||+|+++.
T Consensus 196 ~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 196 LNIYEP-DDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp SGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhhhcC-CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 987764 343 47999999999999999976
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=116.02 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=82.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc--CCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--MPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~--lp~~~~ 165 (506)
+.+.+.++ .++.+|||+|||+|.++..+++.+ ++++|+++ .+++.+.++.. .+...|... ++++++
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~-----~~~~~~~~~~~--~~~~~d~~~~~~~~~~~ 92 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFP-----EAAEQAKEKLD--HVVLGDIETMDMPYEEE 92 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSH-----HHHHHHHTTSS--EEEESCTTTCCCCSCTT
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHhCC--cEEEcchhhcCCCCCCC
Confidence 34555554 345699999999999999998874 67777765 44455555432 556677765 677888
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+||+|++..+++|+ +++..+++++.++|+|||+++++.|..
T Consensus 93 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 93 QFDCVIFGDVLEHL-FDPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp CEEEEEEESCGGGS-SCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred ccCEEEECChhhhc-CCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 99999999999885 567899999999999999999987654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-12 Score=121.68 Aligned_cols=113 Identities=11% Similarity=0.130 Sum_probs=86.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCCC-CCceeEEEEcccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFSTY-PRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~~-p~s~D~v~~~~~~~~~~ 429 (506)
..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. +. ...++.+.++.- +++||+|+++
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------- 118 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------- 118 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------
T ss_pred CCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------
Confidence 4689999999999999999875 489999999999999998832 11 222232444544 5899999984
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEe
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
.++..+|.++.|+|||||.++..........+...+.+.++.....
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEEEE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 3556799999999999999995444445567888888888886543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-11 Score=113.88 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=78.0
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+..+.......++.+...|...++ +++++||+|++++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 458999999999999999875 48999999877755554443332235778888887776 778899999998653
Q ss_pred cccCC--------ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 177 IPWGA--------NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~--------~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|.. ....++.++.++|||||.|++.+.
T Consensus 122 -~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 122 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred -CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 3322 125799999999999999999864
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-12 Score=117.21 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=85.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cc-eeccccccCCC---CCCceeEEEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IG-IYHDWCEAFST---YPRTYDLIHA 421 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~-~~~~~~~~~~~---~p~s~D~v~~ 421 (506)
.+..+|||+|||+|.++..+++.. ...+|+++|.++.|++.|.++-. +. ...+..+.++. ..++||+|.+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 446789999999999999998852 13689999999999998887621 11 11112221211 1289999999
Q ss_pred ccccccccCC-------------CC----------HHHHHHHHhhcccCCcE-EEEEeChhhHHHHHHHHh--cCCceEE
Q 010599 422 HGLFSLYKDK-------------CN----------IEDILLEMDRILRPEGA-IIIRDEVDEIIKVKKIVG--GMRWDTK 475 (506)
Q Consensus 422 ~~~~~~~~~~-------------~~----------~~~~l~e~~RvLrPgG~-~ii~d~~~~~~~~~~~~~--~~~w~~~ 475 (506)
+.-|...... .. ...++.++.|+|||||+ +++.-.....+.+.+++. +.+|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 7555321100 00 16789999999999999 666666666788888888 8888643
Q ss_pred EeecCCCCCCCeEEEEEEec
Q 010599 476 MVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~k~ 495 (506)
.+.... .....+++++|.
T Consensus 188 ~~~~~~--~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVKDL--RGIDRVIAVTRE 205 (215)
T ss_dssp CEEECT--TSCEEEEEEEEC
T ss_pred EEEEec--CCCEEEEEEEEc
Confidence 222221 134778888764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-12 Score=119.49 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC-C--CCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM-P--YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~l-p--~~~~sfDlV~~~ 173 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+..+ +.+.++ ++.+...|+..+ + +++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~-~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLAS-AHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHH-HHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 3458999999999999999865 389999998777655544 334444 477777887663 3 778999999997
Q ss_pred CcccccCCCh--------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 174 RCLIPWGAND--------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 ~~l~~~~~~~--------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.. +|.... ..+++++.++|||||+|++++...
T Consensus 113 ~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~ 153 (218)
T 3dxy_A 113 FPD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153 (218)
T ss_dssp SCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred CCC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 543 443322 259999999999999999987543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=118.66 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=77.6
Q ss_pred HHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcc------cHHHHHhc----Cccceeccccc-
Q 010599 339 NAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN------TLGVIYER----GLIGIYHDWCE- 407 (506)
Q Consensus 339 ~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~------~l~~~~~r----g~~~~~~~~~~- 407 (506)
..+..++..+...+..+|||+|||+|.++..|++......+|+++|.|+. |++.|.++ ++...++..+.
T Consensus 30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 33445555455555678999999999999999875211148999999986 99988776 22112222222
Q ss_pred -----cCCCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 408 -----AFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 408 -----~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.++..+++||+|++..++.+.. +...++..+.++++|||++++.+
T Consensus 110 ~~~~~~~~~~~~~fD~v~~~~~l~~~~---~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 110 NLSDDLGPIADQHFDRVVLAHSLWYFA---SANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CTTTCCGGGTTCCCSEEEEESCGGGSS---CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred hhhhccCCCCCCCEEEEEEccchhhCC---CHHHHHHHHHHHhCCCCEEEEEE
Confidence 2222348999999999998554 55666666666666799999964
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-12 Score=124.56 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC-CCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY-ASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~-~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|.++..+++. .++++|+++.++..+..... ..+. .+.+.+.|...+++ ++++||+|+|..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRAR-NMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHH-TSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 3459999999999999888765 48899998876654443332 2232 36778888888888 6889999999998
Q ss_pred cccc---CCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 176 LIPW---GANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~---~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++|. ..+...+++++.++|||||++++.++.
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 8652 233478999999999999999998754
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=114.63 Aligned_cols=149 Identities=12% Similarity=0.042 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEE-Eeccc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI 158 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~-~~d~~ 158 (506)
++...+...+ +.+.. ...+.+|||||||+|.++..|++. .|+++|+++.|+..+. +....+... ..++.
T Consensus 68 rg~~Kl~~~l-~~~~~-~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~-----r~~~rv~~~~~~ni~ 140 (291)
T 3hp7_A 68 RGGLKLEKAL-AVFNL-SVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL-----RQDDRVRSMEQYNFR 140 (291)
T ss_dssp TTHHHHHHHH-HHTTC-CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH-----HTCTTEEEECSCCGG
T ss_pred chHHHHHHHH-HhcCC-CccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcccceecccCce
Confidence 4445554444 44432 234569999999999999999887 3899999998885432 222233222 22333
Q ss_pred cCC---CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccch----hcccCChHHhHHHHHHHH
Q 010599 159 KMP---YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNY----KAWQRPKEELQEEQRKIE 231 (506)
Q Consensus 159 ~lp---~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~----~~~~~~~~~~~~~~~~l~ 231 (506)
.++ ++..+||+|+|..++++ ...+|.++.|+|||||.|++...|..-.... ....+.....+...+.+.
T Consensus 141 ~l~~~~l~~~~fD~v~~d~sf~s----l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~ 216 (291)
T 3hp7_A 141 YAEPVDFTEGLPSFASIDVSFIS----LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVT 216 (291)
T ss_dssp GCCGGGCTTCCCSEEEECCSSSC----GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHH
T ss_pred ecchhhCCCCCCCEEEEEeeHhh----HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHH
Confidence 333 34456999999887754 3679999999999999999975332111111 123334444455566676
Q ss_pred HHHHhcceeec
Q 010599 232 EIANLLCWEKK 242 (506)
Q Consensus 232 ~l~~~~~w~~~ 242 (506)
+++...+|...
T Consensus 217 ~~~~~~Gf~v~ 227 (291)
T 3hp7_A 217 AFAVDYGFSVK 227 (291)
T ss_dssp HHHHHTTEEEE
T ss_pred HHHHHCCCEEE
Confidence 77677677543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.5e-12 Score=116.79 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+.. +.+...|.... .+++||+|+++..++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENA-ALNGIYDIALQKTSLLAD--VDGKFDLIVANILAE 136 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTCCCCEEEESSTTTT--CCSCEEEEEEESCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEecccccc--CCCCceEEEECCcHH
Confidence 3459999999999999999876 4789999887665544433 333444 67777776543 468999999987764
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+ ...+++++.++|||||+++++..
T Consensus 137 ~----~~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 137 I----LLDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp H----HHHHGGGSGGGEEEEEEEEEEEE
T ss_pred H----HHHHHHHHHHhcCCCCEEEEEec
Confidence 4 36889999999999999999753
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=120.20 Aligned_cols=111 Identities=13% Similarity=0.001 Sum_probs=77.1
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC---
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY--- 162 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~--- 162 (506)
.++.+.+.+... ++.+|||||||+|.++..|++++ |+++|+|+.++. .++++.... ....+...++.
T Consensus 33 ~~~~il~~l~l~--~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~-----~Ar~~~~~~-~v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 33 DRENDIFLENIV--PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCD-----DLAEALADR-CVTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHHTTTCC--TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHH-----HHHHHTSSS-CCEEEECCTTSCCC
T ss_pred HHHHHHHhcCCC--CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHH-----HHHHHHHhc-cceeeeeecccccc
Confidence 334556666443 34599999999999999999874 888888776554 333332111 12223333322
Q ss_pred --CCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 163 --ASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 --~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.+++||+|+|+.+++|+..+ ...++.++.++| |||.++++.+..
T Consensus 105 ~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 25789999999999887543 367999999999 999999987543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-11 Score=114.12 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=71.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEE
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlV~~ 172 (506)
.++.+|||+|||+|.++..|++. .|+++|+++.++. .+.+.+..+ .++.+.+.|... .++. ++||+|+|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE-KLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHH-HHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 34569999999999999988764 4899999987653 344555544 346666666654 3554 79999999
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+. ..+ .+...+++++.|+|||||+|+++.
T Consensus 133 ~~-~~~--~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DI-AQK--NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC-CST--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec-cCh--hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 73 212 222456999999999999999985
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=122.90 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=100.3
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCCCceeEEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHA 421 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p~s~D~v~~ 421 (506)
.+...+..+|||+|||+|.++..|++.. ....++.+|. +.|++.|.++ ++...+.....++ ..+|.+||+|++
T Consensus 164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~ 241 (332)
T 3i53_A 164 KYDWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVL 241 (332)
T ss_dssp SSCCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEE
T ss_pred hCCCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEE
Confidence 3444556799999999999999998732 1257889999 8999988865 3322222223333 334568999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEEEeec
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.++++++.+ .+...+|.++.|+|||||+|+|.|.. ...+++++++++.+++...+..
T Consensus 242 ~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 242 SAVLHDWDD-LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ehhhccCCH-HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999985441 12478999999999999999997642 1356788999999999765443
Q ss_pred CCCCCCCeEEEEEEe
Q 010599 480 EDGPLVPEKILVAVK 494 (506)
Q Consensus 480 ~~~~~~~~~~l~~~k 494 (506)
..+ .-++.++|
T Consensus 321 ~~~----~~vie~r~ 331 (332)
T 3i53_A 321 ISY----VSIVEMTA 331 (332)
T ss_dssp CSS----SEEEEEEE
T ss_pred CCC----cEEEEEee
Confidence 321 55676765
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=113.90 Aligned_cols=111 Identities=14% Similarity=0.029 Sum_probs=82.9
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.....+.+.+... ++.+|||||||+|.++..+++. .++++|+++..+..+..........++.+...|....+.++
T Consensus 64 ~~~~~~~~~l~~~--~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 64 YMVARMTELLELT--PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCC--CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 3445566666443 4559999999999999999876 48899998876655544433322234778888887766667
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|++..+++++. .++.++|||||+++++.+.
T Consensus 142 ~~~D~i~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIP-------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCC-------THHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhh-------HHHHHhcccCcEEEEEEcC
Confidence 8999999998886653 2689999999999998765
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=119.24 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=79.3
Q ss_pred CCCceEEeecCcc---cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCC-------------CCC
Q 010599 351 GRYRNIMDMNAGF---GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFS-------------TYP 413 (506)
Q Consensus 351 ~~~~~vLD~gcG~---G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~-------------~~p 413 (506)
.+.++|||||||+ |.++..+.... ....|+++|.|+.||+.|+++- ....+...+.++. .+|
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 3568999999999 98876665421 1258999999999999998862 1122222334432 245
Q ss_pred -CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 414 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 414 -~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+||+|.+..+|+++.+. ++..+|.|+.|+|||||+|+|.+..
T Consensus 155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 689999999999977644 6889999999999999999998754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=114.96 Aligned_cols=124 Identities=13% Similarity=0.081 Sum_probs=87.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCC-C-CCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FST-Y-PRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~-~-p~s~D~v~~~~ 423 (506)
..+|||+|||+|.++..|+... ...+|+++|.++.|+..|.++ |+ ..+...+.+ ++. + +++||+|+++.
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 4579999999999999998742 125899999999999988775 32 222222233 331 3 38999999964
Q ss_pred ccccc-----cCCCCHHHHHHHHhhcccCCcEEEEEe-ChhhHHHHHHHHhcCCceEEEee
Q 010599 424 LFSLY-----KDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 424 ~~~~~-----~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
...+. ..+.....+|.++.|+|||||.+++.. .....+.+.+++...+|......
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence 33211 111134689999999999999999965 44567788888888889865443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=112.49 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEc-Ccccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCS-RCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~-~~l~~ 178 (506)
++.+|||+|||+|.++..+++.+ ++++|+++. +++.+.++...+.+...|...+++++++||+|+++ .++++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~-----~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPI-----LIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHH-----HHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 34589999999999999998874 777777654 44555555455778888888888888899999998 56655
Q ss_pred cCC-ChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 179 WGA-NDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 179 ~~~-~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.. +...++.++.++|+|||++++..+..
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 432 23789999999999999999986543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-11 Score=118.49 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=80.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHH-hhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYL-WSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L-~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
...++.-..++.+. ++.+|||||||+|.++..+ ++. .|+++|+++.++..+....+......+.+.++|+..+|
T Consensus 108 ~~l~~~E~~la~l~--~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~ 185 (298)
T 3fpf_A 108 LELLKNEAALGRFR--RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID 185 (298)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG
T ss_pred HHHHHHHHHHcCCC--CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC
Confidence 33333333445443 4569999999999776544 432 58999999987766665544433235788888888775
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++||+|++... .++...+++++.|+|||||+|++...
T Consensus 186 --d~~FDvV~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 186 --GLEFDVLMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --GCCCSEEEECTT----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --CCCcCEEEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 789999998653 35678999999999999999999763
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=114.87 Aligned_cols=101 Identities=10% Similarity=0.143 Sum_probs=76.9
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEcCc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~~~ 175 (506)
+.+|||||||+|.++..|++. .++++|+++.++..+..+. ...+. ++.+...|+..++ +++++||.|++.+.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~-~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKV-KDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHH-HHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHH-HHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 458999999999999999875 4899999887775554433 33444 4778888887766 77889999998654
Q ss_pred ccccCCC--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 176 LIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +|... ...+++++.++|||||.|++.+.
T Consensus 118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 33221 25789999999999999999864
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=121.51 Aligned_cols=145 Identities=11% Similarity=0.102 Sum_probs=103.1
Q ss_pred HHhhhcCCCC-CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CC
Q 010599 343 KINRLLDSGR-YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YP 413 (506)
Q Consensus 343 ~~~~~i~~~~-~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p 413 (506)
.++..+...+ ..+|||+|||+|.++..|++.. ....++.+|. +.|++.+.++ ++...+.....++.. .+
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 246 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG 246 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC
Confidence 3444444444 7799999999999999998742 1257899999 6899988765 332222222333322 45
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh---------------------------hhHHHHHHH
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------------DEIIKVKKI 466 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~---------------------------~~~~~~~~~ 466 (506)
..||+|++.++|+++. ..+...+|.++.|+|||||+|+|.|.. ...++++++
T Consensus 247 ~~~D~v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFD-AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp CCEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred CCccEEEEecccccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 7899999999998553 123478999999999999999997521 024668889
Q ss_pred HhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 467 VGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 467 ~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+++.+|++..... ....+++++|+
T Consensus 326 l~~aGf~~~~~~~-----g~~~l~~a~kp 349 (352)
T 3mcz_A 326 VRDAGLAVGERSI-----GRYTLLIGQRS 349 (352)
T ss_dssp HHHTTCEEEEEEE-----TTEEEEEEECC
T ss_pred HHHCCCceeeecc-----CceEEEEEecC
Confidence 9999999665322 25789999986
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=115.34 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHH---HHcCC-CeEEEEeccccCCCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFA---LERGV-PAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a---~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
++.+|||||||+|.++..|++. .++++|+++.++........ ...+. ++.+.+.|+..+|+++++ |.|+..
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 3458999999999999999876 48999999988864332211 12333 578888999999998777 887754
Q ss_pred Cccc----ccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010599 174 RCLI----PWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 174 ~~l~----~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
.... |+..++..+++++.++|||||.|+++.....|
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAW 145 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGB
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccc
Confidence 3221 13455689999999999999999997644433
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=115.06 Aligned_cols=122 Identities=9% Similarity=0.031 Sum_probs=84.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCC-C-CCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FST-Y-PRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~-~-p~s~D~v~~~~ 423 (506)
...|||+|||+|.++..|++.. ...+|+++|.++.|+..|.++ |+ ..+...+.+ ++. + +++||.|++..
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 4579999999999999998741 125899999999999988775 33 112222222 221 3 38999998743
Q ss_pred cccc-----ccCCCCHHHHHHHHhhcccCCcEEEEEe-ChhhHHHHHHHHhcCCceEEE
Q 010599 424 LFSL-----YKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 424 ~~~~-----~~~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~~~w~~~~ 476 (506)
...+ ...+.....+|.++.|+|||||.|+|.. .....+.+...+...+|....
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTY 175 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 2221 1112224689999999999999999964 555667777777777787543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-11 Score=108.43 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=76.5
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecc-ccCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT-IKMP 161 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~-~~lp 161 (506)
....+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+... +...+.+ ..+...+. ..++
T Consensus 13 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~d~~~~~~ 89 (178)
T 3hm2_A 13 VRALAISALAPK--PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN-AINLGVSDRIAVQQGAPRAFD 89 (178)
T ss_dssp HHHHHHHHHCCC--TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH-HHTTTCTTSEEEECCTTGGGG
T ss_pred HHHHHHHHhccc--CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-HHHhCCCCCEEEecchHhhhh
Confidence 334455555433 3458999999999999999876 378899988666444332 3333443 22555555 3344
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...++||+|++..++++ ..+++++.++|||||++++...
T Consensus 90 ~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 90 DVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred ccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 33379999999988754 5689999999999999999864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-11 Score=122.27 Aligned_cols=145 Identities=13% Similarity=0.136 Sum_probs=102.1
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDL 418 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~ 418 (506)
++..+...+..+|||+|||+|.++..|++.. ...+++++|. +.|++.|.++ ++...+.....++...| ..+|+
T Consensus 182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~ 259 (359)
T 1x19_A 182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 259 (359)
T ss_dssp HHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSE
T ss_pred HHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCE
Confidence 3444445567799999999999999998752 1258999999 8999998876 43222333334444333 34499
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------------hhHHHHHHHHhcC
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------------DEIIKVKKIVGGM 470 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------------~~~~~~~~~~~~~ 470 (506)
|++..+|+++.+ .....+|.++.|+|||||+++|.|.. ...+++++++++.
T Consensus 260 v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 260 VLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 999999985541 13678999999999999999997611 2446788888899
Q ss_pred CceEEEeecCCCCCCCeEEEEEEec
Q 010599 471 RWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 471 ~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
+|+...+.... ...+++++|+
T Consensus 339 Gf~~v~~~~~~----~~~vi~a~kp 359 (359)
T 1x19_A 339 GYKDVTMVRKY----DHLLVQAVKP 359 (359)
T ss_dssp TCEEEEEEEET----TEEEEEEECC
T ss_pred CCceEEEEecC----CceEEEEeCC
Confidence 99865433322 4567888874
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=115.49 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=81.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHH----h----cCccceeccccc---cCCCCCCceeEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----E----RGLIGIYHDWCE---AFSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~----~----rg~~~~~~~~~~---~~~~~p~s~D~v 419 (506)
....+|||+|||+|.++..|++.. ...+|+++|.|++|+..+. + +++ ..+...+. .++..+++ |.|
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEE
Confidence 345689999999999999998852 2368999999999999632 1 222 12222233 34433355 777
Q ss_pred EEcccccccc--CCCCHHHHHHHHhhcccCCcEEEEEeCh------------------h-hHHHHHHHHhcCCceEEEe
Q 010599 420 HAHGLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDEV------------------D-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 420 ~~~~~~~~~~--~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------~-~~~~~~~~~~~~~w~~~~~ 477 (506)
+....+.... +..+...+|.|+.|+|||||.++|.... . ..+.+..++...+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 7322221111 2234477999999999999999995311 1 2345888999999997643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-11 Score=115.64 Aligned_cols=123 Identities=12% Similarity=-0.013 Sum_probs=83.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccc-eecccc--ccCCCCCCceeEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIG-IYHDWC--EAFSTYPRTYDLIH 420 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~-~~~~~~--~~~~~~p~s~D~v~ 420 (506)
+...+..+|||+|||+|.++.+|++.-.....|+++|.+++|++.+.++- .+. +..+-+ +..+..++++|+|+
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf 152 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLY 152 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEE
Confidence 44455678999999999999999874223368999999999999877652 111 211111 12233448999998
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------hhHHHHHHHHhcCCceEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------~~~~~~~~~~~~~~w~~~ 475 (506)
+.. . +..+...+|.|+.|+|||||.++|.+.. .......+.++..+++..
T Consensus 153 ~d~--~---~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~ 212 (233)
T 4df3_A 153 ADV--A---QPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIK 212 (233)
T ss_dssp ECC--C---CTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEE
T ss_pred Eec--c---CChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEE
Confidence 732 2 3446678999999999999999996422 123334455667788754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-11 Score=117.22 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=83.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCcc------chHHHHHHHHHHcCC--CeEE
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPR------DSHEAQVQFALERGV--PAVI 152 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~------dl~~~~~~~a~~~~~--~~~~ 152 (506)
......+.+.+... ++.+|||||||+|.++..++++ .++++|+++. ++..+.... ...+. .+.+
T Consensus 29 ~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~-~~~~~~~~v~~ 105 (275)
T 3bkx_A 29 TAHRLAIAEAWQVK--PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL-LAGPLGDRLTV 105 (275)
T ss_dssp HHHHHHHHHHHTCC--TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH-HTSTTGGGEEE
T ss_pred HHHHHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH-HhcCCCCceEE
Confidence 34445566666443 4459999999999999998864 4889999986 665444333 33332 4677
Q ss_pred EEec---cccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 153 GVLG---TIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 153 ~~~d---~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...| ...+|+++++||+|+|..+++|+ +++..+++.+.++++|||++++...
T Consensus 106 ~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYF-ASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp ECSCCTTTCCGGGTTCCCSEEEEESCGGGS-SCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EECChhhhccCCCCCCCEEEEEEccchhhC-CCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7776 45667788999999999999775 5566677777777777999999753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-11 Score=121.28 Aligned_cols=147 Identities=20% Similarity=0.154 Sum_probs=101.6
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCCCceeEEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYPRTYDLIHA 421 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p~s~D~v~~ 421 (506)
.+...+..+|||+|||+|.++..|++.. ....++++|. +.|++.|.++ |+...+...+.++. .+|..||+|++
T Consensus 177 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~ 254 (374)
T 1qzz_A 177 AYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 254 (374)
T ss_dssp TSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred hCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEE
Confidence 3344556799999999999999998752 1258999999 8999988875 33222233334432 35656999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC--h-h------------------------hHHHHHHHHhcCCceE
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--V-D------------------------EIIKVKKIVGGMRWDT 474 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~--~-~------------------------~~~~~~~~~~~~~w~~ 474 (506)
.++|+++.+ .....+|.++.|+|||||+++|.|. . + ..+++++++.+.+|++
T Consensus 255 ~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 333 (374)
T 1qzz_A 255 SFVLLNWSD-EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL 333 (374)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred eccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 999985431 1224899999999999999999876 2 1 3467888999999986
Q ss_pred EEeecCCCCC--CCeEEEEEEecc
Q 010599 475 KMVDHEDGPL--VPEKILVAVKQY 496 (506)
Q Consensus 475 ~~~~~~~~~~--~~~~~l~~~k~~ 496 (506)
..+....+.. ....++.++|.=
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 334 ASERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEEEECCSSCSSCEEEEEEEECC
T ss_pred EEEEECCCCcccCCcEEEEEEECc
Confidence 6443332221 112678888753
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=109.25 Aligned_cols=106 Identities=10% Similarity=-0.074 Sum_probs=77.5
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~s 166 (506)
.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+.+ +.+...|.........+
T Consensus 46 ~~l~~l~~~--~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALAPR--RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK-NIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHCCC--TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcCCC--CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344555433 3459999999999999999887 48899998876654443 33344544 77888887663223357
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
||+|++...+ +.. +++++.++|||||++++...
T Consensus 123 ~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 123 PEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp CSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred CCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 9999987643 345 99999999999999999865
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=119.57 Aligned_cols=146 Identities=13% Similarity=0.124 Sum_probs=102.3
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCCCceeE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDL 418 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p~s~D~ 418 (506)
++..+...+..+|||+|||+|.++..|++.. ....++++|. +.+++.|.++ ++...+.....++ ..+|..||+
T Consensus 194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~ 271 (369)
T 3gwz_A 194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADV 271 (369)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSE
T ss_pred HHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceE
Confidence 3334555667899999999999999998752 2257899999 8999988864 3322222223333 234568999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh------------------------hhHHHHHHHHhcCCceE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------DEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------------~~~~~~~~~~~~~~w~~ 474 (506)
|++.++|+++. ......+|.++.|+|||||+|+|.|.. ...+++++++++.+|+.
T Consensus 272 v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 272 YLIKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EEhhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 99999998443 112237999999999999999996532 12577889999999997
Q ss_pred EEeecCCCCCCCeEEEEEEe
Q 010599 475 KMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k 494 (506)
..+....+ ...-++.|+|
T Consensus 351 ~~~~~~~~--~~~svie~~~ 368 (369)
T 3gwz_A 351 ERSLPCGA--GPVRIVEIRR 368 (369)
T ss_dssp EEEEECSS--SSEEEEEEEE
T ss_pred EEEEECCC--CCcEEEEEEe
Confidence 65543111 2466777776
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=115.88 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=80.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---------CccceeccccccCCC-----C-CCce
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---------GLIGIYHDWCEAFST-----Y-PRTY 416 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---------g~~~~~~~~~~~~~~-----~-p~s~ 416 (506)
...+|||||||+|.++..|+... ...+|+++|.++.|++.|.++ .....+...+.++.. + +++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 34579999999999999998752 125899999999999988653 111222222333322 3 4899
Q ss_pred eEEEEccccccc-----cCCCCHHHHHHHHhhcccCCcEEEEE-eChhhHHHHHHHHhcCC-ce
Q 010599 417 DLIHAHGLFSLY-----KDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMR-WD 473 (506)
Q Consensus 417 D~v~~~~~~~~~-----~~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~-w~ 473 (506)
|.|++...-.+. ..+.....+|.++.|+|||||.|+|. |...+.+.+.+.+.... |.
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~ 188 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE 188 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 999873222111 11112257999999999999999985 55567777777766654 55
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=112.34 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCChhHHHHhh--C--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC---CCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWS--R--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA---SRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~--~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~---~~sfDlV~~~ 173 (506)
.+.+|||||||+|.++..|+. . .++++|+++.++..+.... ...+. ++.+...++..++++ +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLS-EALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 345999999999999998884 2 4899999987765554333 33344 477888888777754 6799999996
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+ .+...+++++.++|||||+|++..
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 52 456899999999999999999863
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.9e-12 Score=125.06 Aligned_cols=122 Identities=12% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc--------------------------------
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-------------------------------- 399 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-------------------------------- 399 (506)
...+|||+|||+|.++..|+..- ....|+++|.++.|++.|.++.-.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 35689999999999999998751 124899999999999999887210
Q ss_pred -----------------------------ceeccccccCC--------CCCCceeEEEEcccccccc---CCCCHHHHHH
Q 010599 400 -----------------------------GIYHDWCEAFS--------TYPRTYDLIHAHGLFSLYK---DKCNIEDILL 439 (506)
Q Consensus 400 -----------------------------~~~~~~~~~~~--------~~p~s~D~v~~~~~~~~~~---~~~~~~~~l~ 439 (506)
..+...+.++. ..+++||+|+|.+++.+.. ...++..+|.
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 11222222222 2348999999999886442 3446788999
Q ss_pred HHhhcccCCcEEEEEeCh-----------h-----------hHHHHHHHHhc--CCceE
Q 010599 440 EMDRILRPEGAIIIRDEV-----------D-----------EIIKVKKIVGG--MRWDT 474 (506)
Q Consensus 440 e~~RvLrPgG~~ii~d~~-----------~-----------~~~~~~~~~~~--~~w~~ 474 (506)
++.|+|||||+|+|.... + ..+.+..++.+ .+++.
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~ 263 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSS 263 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCE
T ss_pred HHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceE
Confidence 999999999999996421 0 12457777777 88864
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-11 Score=120.68 Aligned_cols=139 Identities=16% Similarity=0.248 Sum_probs=98.9
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGL 424 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D~v~~~~~ 424 (506)
.+..+|||+|||+|.++..|++.. ...+++++|.+ .|++.|.++ |+...+...+.++.. ++..||+|++.++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcch
Confidence 456789999999999999998752 12589999999 999988876 332222233344432 4456999999999
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---------------------------hHHHHHHHHhcCCceEEEe
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
++++. ..+...+|.++.|+|||||+++|.|... ..+++++++++.+++...+
T Consensus 242 l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 242 LHHFD-VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred hccCC-HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 98553 1245689999999999999999975321 2577888999999986654
Q ss_pred ecCCCCCCCeEEEEEEec
Q 010599 478 DHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 478 ~~~~~~~~~~~~l~~~k~ 495 (506)
....+. ..+++++++
T Consensus 321 ~~~~~~---~~~i~~~~~ 335 (335)
T 2r3s_A 321 HSLPTT---QQQVIVAYK 335 (335)
T ss_dssp ECCTTS---SSEEEEEEC
T ss_pred EECCCC---ceeEEEecC
Confidence 433332 346666653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.9e-11 Score=122.07 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=99.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC----CeEEEEecc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV----PAVIGVLGT 157 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~----~~~~~~~d~ 157 (506)
+.-.+.+.+.++... +.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..++ .+.+...|.
T Consensus 208 d~~~~~ll~~l~~~~--~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~-~ngl~~~~~v~~~~~D~ 284 (375)
T 4dcm_A 208 DIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINNA 284 (375)
T ss_dssp CHHHHHHHHTCCCSC--CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCGGGGGGEEEEECST
T ss_pred cHHHHHHHHhCcccC--CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH-HcCCCcCceEEEEechh
Confidence 333344566664433 358999999999999999876 38999999877755554433 3332 366677777
Q ss_pred ccCCCCCCCeeEEEEcCccccc---CCCh-HHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHH
Q 010599 158 IKMPYASRAFDMAHCSRCLIPW---GAND-GRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEI 233 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~---~~~~-~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l 233 (506)
.. ++++++||+|+|+..+++. .... ..+++++.++|||||.++++.+.... + ...+++.
T Consensus 285 ~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~-------------~---~~~l~~~ 347 (375)
T 4dcm_A 285 LS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLD-------------Y---FHKLKKI 347 (375)
T ss_dssp TT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSC-------------H---HHHHHHH
T ss_pred hc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcC-------------H---HHHHHHh
Confidence 65 5677899999999887542 1222 46899999999999999998654311 0 1223333
Q ss_pred HHhcceeeccccCceEEEEecC
Q 010599 234 ANLLCWEKKSEKGEIAVWQKKV 255 (506)
Q Consensus 234 ~~~~~w~~~~~~~~~~i~~kp~ 255 (506)
.. ..+.+.++..+.|++...
T Consensus 348 fg--~~~~~a~~~~F~V~~~~~ 367 (375)
T 4dcm_A 348 FG--NCTTIATNNKFVVLKAVK 367 (375)
T ss_dssp HS--CCEEEEECSSEEEEEEEC
T ss_pred cC--CEEEEeeCCCEEEEEEcC
Confidence 33 256677777888887655
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=117.94 Aligned_cols=124 Identities=14% Similarity=0.028 Sum_probs=79.9
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCC-cccHHHH---Hhc----CccceeccccccCCCCC----CceeEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLAD-KNTLGVI---YER----GLIGIYHDWCEAFSTYP----RTYDLI 419 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~-~~~l~~~---~~r----g~~~~~~~~~~~~~~~p----~s~D~v 419 (506)
...+|||||||+|.++..|++.. ...+|+++|.| +.|+++| .++ |+ ..+...+.+...+| +.+|.|
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEEE
Confidence 35689999999999999998532 23789999999 7788876 443 32 12222333433334 556666
Q ss_pred EEccccccc--cCCCCHHHHHHHHhhcccCCcEEEEEeC-------h------------hhH--HHHHHHHhcCCceEEE
Q 010599 420 HAHGLFSLY--KDKCNIEDILLEMDRILRPEGAIIIRDE-------V------------DEI--IKVKKIVGGMRWDTKM 476 (506)
Q Consensus 420 ~~~~~~~~~--~~~~~~~~~l~e~~RvLrPgG~~ii~d~-------~------------~~~--~~~~~~~~~~~w~~~~ 476 (506)
+++..+... ..+.+...+|.|+.|+|||||+++|... . .+. +++.+.+.+.+|++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 664322211 1122345789999999999999999111 0 011 1388889999999664
Q ss_pred e
Q 010599 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
.
T Consensus 182 ~ 182 (225)
T 3p2e_A 182 V 182 (225)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=117.59 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC-----CCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS-----RAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~-----~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..|++. .++++|+++.++..+.... ....+.+.+.|...+++.. ..||+|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEcc
Confidence 4458999999999999999886 5889999876554333222 2235778888887655332 2499999999
Q ss_pred cccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 175 CLIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|+.. +...+++++.++|||||++++...
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9877643 347999999999999999888754
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-11 Score=117.13 Aligned_cols=120 Identities=11% Similarity=0.056 Sum_probs=87.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----CccceeccccccCCC-CC-CceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDWCEAFST-YP-RTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~~~~~~~-~p-~s~D~v 419 (506)
.+...+..+|||+|||+|.++..|++.-....+|+++|.++.+++.|.++ |. ..+...+.++.. ++ ++||+|
T Consensus 105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~fD~V 183 (275)
T 1yb2_A 105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQMYDAV 183 (275)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSCCEEEE
T ss_pred HcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCCCccEE
Confidence 34445567899999999999999987400125899999999999988876 32 122222333322 33 789999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEE
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~ 475 (506)
.+ +..+...+|.++.|+|||||++++.+... ..+.+.+.+...+|...
T Consensus 184 i~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 184 IA--------DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp EE--------CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEE
T ss_pred EE--------cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEE
Confidence 98 34466789999999999999999988764 56777777888888754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=122.83 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=78.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------cceeccccccCCC------C---
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEAFST------Y--- 412 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~~~~~~~~~~~~------~--- 412 (506)
+..+|||+|||+|.++..|++.+ ..+|+++|.++.|++.|.++.. ...+...+.++.. +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 35689999999999999998754 3589999999999999987631 0112222233222 2
Q ss_pred CCceeEEEEccccccc-cCCCCHHHHHHHHhhcccCCcEEEEEeChh
Q 010599 413 PRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
+++||+|.|+.++++. .+..++..+|.++.|+|||||.+++.....
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 2599999999988765 444456789999999999999999987653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.4e-11 Score=116.01 Aligned_cols=139 Identities=11% Similarity=0.107 Sum_probs=95.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-CCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p~s~D~v~~~~~~ 425 (506)
...+|||+|||+|.++..|+... ...+|+++|.|+.+++.|.++ |+. .+...+.++.. + +++||+|.++.-+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQFAMIVSNPPY 186 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTCCEEEEEECCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcccCCccEEEECCCC
Confidence 34589999999999999998531 125899999999999988876 321 12222333322 3 4899999997333
Q ss_pred c-------------cccCC---------CCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCC
Q 010599 426 S-------------LYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 426 ~-------------~~~~~---------~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
. +.++. ..+..++.++.++|||||++++.......+.+++++++.+|+...+..+ .
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d--~ 264 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD--Y 264 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC--T
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec--C
Confidence 2 21111 1346799999999999999999887777788999999989973322111 1
Q ss_pred CCCeEEEEEEe
Q 010599 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
.....+++++|
T Consensus 265 ~g~~r~~~~~~ 275 (276)
T 2b3t_A 265 GDNERVTLGRY 275 (276)
T ss_dssp TSSEEEEEEEC
T ss_pred CCCCcEEEEEE
Confidence 13567777764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=116.84 Aligned_cols=120 Identities=8% Similarity=0.065 Sum_probs=81.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCC-C-CCceeEEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FST-Y-PRTYDLIHA 421 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~-~-p~s~D~v~~ 421 (506)
....|||+|||+|.++..|++.. ...+|+++|.+++|++.|.++ |+ ..+...+.+ ++. + +++||.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 34579999999999999998642 125799999999999987765 33 222222333 221 3 499999998
Q ss_pred cccccccc-----CCCCHHHHHHHHhhcccCCcEEEEEe-ChhhHHHHHHHHhc-CCce
Q 010599 422 HGLFSLYK-----DKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGG-MRWD 473 (506)
Q Consensus 422 ~~~~~~~~-----~~~~~~~~l~e~~RvLrPgG~~ii~d-~~~~~~~~~~~~~~-~~w~ 473 (506)
.....+.. .+..-..+|.++.|+|||||.|+|.. ...+.+.+..++.. -.|+
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~ 170 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYK 170 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcc
Confidence 53332111 11112369999999999999999964 45567777776554 3465
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.6e-11 Score=112.99 Aligned_cols=140 Identities=9% Similarity=0.017 Sum_probs=85.7
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccH----HHHHhcC-ccceecccccc--CCCCCCceeEEEEc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL----GVIYERG-LIGIYHDWCEA--FSTYPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l----~~~~~rg-~~~~~~~~~~~--~~~~p~s~D~v~~~ 422 (506)
..+..+|||+|||+|+++.+|++.-.....|+++|.++.|+ +.+.+|. +.....|-... +...+.+||+|+++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 45567899999999999998876311124899999999875 4555553 21122111110 11234799999996
Q ss_pred cccccccCCCCHHHHH-HHHhhcccCCcEEEEEe----------ChhhHHHHHHHHhcCCceEEE-eecCCCCCCCeEEE
Q 010599 423 GLFSLYKDKCNIEDIL-LEMDRILRPEGAIIIRD----------EVDEIIKVKKIVGGMRWDTKM-VDHEDGPLVPEKIL 490 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l-~e~~RvLrPgG~~ii~d----------~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~l 490 (506)
..+ .+...+| ..+.|+|||||+|++.- ..+........+++.++++.. .+.+. -..+..++
T Consensus 154 ~a~------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p-~~~~h~~v 226 (232)
T 3id6_C 154 IAQ------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP-YDKDHAIV 226 (232)
T ss_dssp CCC------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTT-TCSSCEEE
T ss_pred CCC------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCC-CcCceEEE
Confidence 433 3444455 45566999999999852 112234455566666787553 33321 11367888
Q ss_pred EEEecc
Q 010599 491 VAVKQY 496 (506)
Q Consensus 491 ~~~k~~ 496 (506)
+++|++
T Consensus 227 ~~~~~~ 232 (232)
T 3id6_C 227 LSKYKG 232 (232)
T ss_dssp EEEEC-
T ss_pred EEEeCC
Confidence 998863
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=111.46 Aligned_cols=146 Identities=11% Similarity=0.088 Sum_probs=97.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-------ceeccccccCCCC--------
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-------GIYHDWCEAFSTY-------- 412 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-------~~~~~~~~~~~~~-------- 412 (506)
+......+|||+|||+|.++..|+.+. ...+|+++|.++.|++.|.++-.. ..+...+.++..+
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc
Confidence 344445689999999999999888752 136899999999999999875321 1122233444333
Q ss_pred --CCceeEEEEccccccc---------------cCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010599 413 --PRTYDLIHAHGLFSLY---------------KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 413 --p~s~D~v~~~~~~~~~---------------~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
+++||+|.++--|... ...+.++.+|.++.++|||||++++.-......++...+++. |...
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~~ 189 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGGL 189 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEEE
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCce
Confidence 4899999997444321 123457889999999999999999987776677777777764 7643
Q ss_pred Eee---cCCCCCCCeEEEEEEec
Q 010599 476 MVD---HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 476 ~~~---~~~~~~~~~~~l~~~k~ 495 (506)
.+. ...+.....+++.++|.
T Consensus 190 ~i~~v~~~~~~~~~~~lv~~~k~ 212 (260)
T 2ozv_A 190 EITLIHPRPGEDAVRMLVTAIKG 212 (260)
T ss_dssp EEEEEESSTTSCCCEEEEEEEET
T ss_pred EEEEEcCCCCCCceEEEEEEEeC
Confidence 221 12222234566777773
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=115.91 Aligned_cols=144 Identities=16% Similarity=0.168 Sum_probs=100.0
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccC-CCCCCceeE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF-STYPRTYDL 418 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~-~~~p~s~D~ 418 (506)
++..+...+ .+|||+|||+|.++..|++.. ....++++|. +.|++.|.++- +...+.....++ ..+|.+||+
T Consensus 160 ~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~ 236 (334)
T 2ip2_A 160 IPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDI 236 (334)
T ss_dssp HHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSE
T ss_pred HHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCE
Confidence 334344455 899999999999999998742 1247999999 89999988762 111122222333 235578999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-------------------------hhHHHHHHHHhcCCce
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------------------DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------------------------~~~~~~~~~~~~~~w~ 473 (506)
|++.++++++. ......+|.++.|+|||||+++|.|.. ...+++++++++.+++
T Consensus 237 v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 315 (334)
T 2ip2_A 237 YLLSRIIGDLD-EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA 315 (334)
T ss_dssp EEEESCGGGCC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred EEEchhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCc
Confidence 99999998543 113348999999999999999997632 0256778889999998
Q ss_pred EEEeecCCCCCCCeEEEEEEe
Q 010599 474 TKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~k 494 (506)
...+....+ ..-++.++|
T Consensus 316 ~~~~~~~~~---~~~~i~~~~ 333 (334)
T 2ip2_A 316 VERIVDLPM---ETRMIVAAR 333 (334)
T ss_dssp EEEEEEETT---TEEEEEEEE
T ss_pred eeEEEECCC---CCEEEEEEe
Confidence 664433222 356777776
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=111.20 Aligned_cols=98 Identities=15% Similarity=-0.032 Sum_probs=74.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC---CCCeeEEEE
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA---SRAFDMAHC 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~---~~sfDlV~~ 172 (506)
..+.+|||||||+|..+..|+.. .|+++|+++.++..+... +...+. ++.+...++..++.. .++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERA-IEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 34569999999999998888754 489999998776554433 333444 477888888777643 479999999
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+ .+...+++++.++|||||+|++..
T Consensus 158 ~a~-----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RAV-----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ESS-----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCc-----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 643 235789999999999999998754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=127.08 Aligned_cols=102 Identities=8% Similarity=0.103 Sum_probs=77.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----------Cccceecccccc---CCCCCCceeE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----------GLIGIYHDWCEA---FSTYPRTYDL 418 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----------g~~~~~~~~~~~---~~~~p~s~D~ 418 (506)
...+|||+|||+|.++..|++.+....+|+++|.++.|++.|.+| |+ ..+...+.+ ++..+++||+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCeeE
Confidence 456899999999999999998753335899999999999999873 22 122223333 3433489999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
|++..+|+|+.+ .....++.++.|+|||| .++|.+.
T Consensus 800 VV~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 800 GTCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEEec
Confidence 999999996652 12346999999999999 8888654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.1e-11 Score=119.95 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||||||+|.++..+++. .|+++|+++ ++..+ .+.+...+.. +.+...++..+++++++||+|++..+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYA-VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHH-HHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHH-HHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 3458999999999999999987 489999994 55443 3445555554 788899999999998999999997643
Q ss_pred cc--cCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 177 IP--WGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 177 ~~--~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ .......++.++.|+|||||+++..
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 22 2345588999999999999999853
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-11 Score=117.50 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=87.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++..+++.+.. .|+++|.++.|++.|.++ |+...+...+.++..+ +++||+|+++...
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV- 202 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch-
Confidence 467999999999999999886532 799999999999988775 3322233334444443 4899999984332
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeCh-------hhHHHHHHHHhcCCceEEE
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------~~~~~~~~~~~~~~w~~~~ 476 (506)
....++.++.|+|||||.+++.+.. ...+.+.+.+.+.+|++..
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 3356899999999999999996543 3568888999999999776
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-10 Score=104.25 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=81.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~ 162 (506)
....+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+..... ..+. .+.+...|... ++
T Consensus 21 ~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~d~~~-~~ 96 (183)
T 2yxd_A 21 EEIRAVSIGKLNLN--KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLA-KFNIKNCQIIKGRAED-VL 96 (183)
T ss_dssp HHHHHHHHHHHCCC--TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHH-HTTCCSEEEEESCHHH-HG
T ss_pred HHHHHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCcEEEEECCccc-cc
Confidence 34445555555433 3459999999999999999875 48899998876654443333 3343 46777777766 66
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++||+|++..+ .+...+++++.++ |||.+++..+.
T Consensus 97 ~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 97 DKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp GGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred cCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEecc
Confidence 6789999999876 4568899999999 99999998753
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=111.62 Aligned_cols=117 Identities=12% Similarity=0.087 Sum_probs=85.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc-----CccceeccccccCCC--CC-CceeE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----GLIGIYHDWCEAFST--YP-RTYDL 418 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r-----g~~~~~~~~~~~~~~--~p-~s~D~ 418 (506)
+......+|||+|||+|.++..|++. + ...+|+++|.++.+++.|.++ |. ..+...+.++.. ++ ++||+
T Consensus 92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~~~D~ 169 (258)
T 2pwy_A 92 LDLAPGMRVLEAGTGSGGLTLFLARAVG-EKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLEEAELEEAAYDG 169 (258)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGGGCCCCTTCEEE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchhhcCCCCCCcCE
Confidence 34445568999999999999999875 1 124899999999999998876 42 112222222222 33 78999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDT 474 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~ 474 (506)
|++ +..+...+|.++.|+|||||.+++.+... ...++.+.+...+|..
T Consensus 170 v~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 170 VAL--------DLMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp EEE--------ESSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred EEE--------CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 998 34456679999999999999999988754 5566667777788764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=118.40 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=83.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.+.+.+.+... ++.+|||||||+|.++..+++. .++++|+++ ++..+ .+.....+. .+.+...++..+
T Consensus 50 ~~~~~~i~~~~~~~--~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a-~~~~~~~~~~~~i~~~~~d~~~~ 125 (340)
T 2fyt_A 50 ESYRDFIYQNPHIF--KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQA-MDIIRLNKLEDTITLIKGKIEEV 125 (340)
T ss_dssp HHHHHHHHHCGGGT--TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHH-HHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhhhhc--CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHH-HHHHHHcCCCCcEEEEEeeHHHh
Confidence 44556666655332 3459999999999999999886 489999986 65444 344444443 578888899888
Q ss_pred CCCCCCeeEEEEcCccc--ccCCChHHHHHHHHHhcCCCeEEEE
Q 010599 161 PYASRAFDMAHCSRCLI--PWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~--~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
++++++||+|++..+.. +...+...++.++.++|||||.++.
T Consensus 126 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 126 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 98888999999976321 2133347899999999999999983
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=121.59 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=76.7
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAH 422 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D~v~~~ 422 (506)
...+..+|||+|||+|.++..+++.+. .+|+++|.+ +|++.|.++ |+...+...+.++.. ++++||+|++.
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~ 136 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISE 136 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEc
Confidence 334456899999999999999998753 389999999 999988765 322112222233332 34899999996
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+...+.+...+..+|.+++|+|||||.+++.
T Consensus 137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 137 WMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred ChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 65555555567889999999999999999883
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-11 Score=109.41 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=71.0
Q ss_pred CCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCC
Q 010599 103 VRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGA 181 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~ 181 (506)
+.+|||+|||+|.++..|+++ .++++|+++.++.. ...+.+.+.|... ++++++||+|+++..+++..+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCCCccCCc
Confidence 448999999999999999988 57788887654432 2346677778766 667789999999988754332
Q ss_pred C--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 182 N--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 182 ~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ...++.++.+.| |||.+++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 2 257889999999 9999999764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=119.95 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=74.4
Q ss_pred CCEEEEECCCCCh----hHHHHhhC--------CcEEEecCccchHHHHHHHH--------------H-----H---cC-
Q 010599 103 VRTALDTGCGVAS----WGAYLWSR--------NVIAMSFAPRDSHEAQVQFA--------------L-----E---RG- 147 (506)
Q Consensus 103 ~~~VLDiGCG~G~----~~~~L~~~--------~v~~vdis~~dl~~~~~~~a--------------~-----~---~~- 147 (506)
..+|||+|||+|. ++..|++. .|+++|+|+.++..+....- + . .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4589999999997 55555542 47899998877765543210 0 0 00
Q ss_pred --------CCeEEEEeccccCCCC-CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 148 --------VPAVIGVLGTIKMPYA-SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 --------~~~~~~~~d~~~lp~~-~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..+.|.+.|....|++ .++||+|+|..+++|+.+.. ..++.++.+.|+|||+|++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1367778888776665 57899999999998874422 789999999999999999854
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-11 Score=116.87 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-----------------------------
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV----------------------------- 148 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~----------------------------- 148 (506)
.++.+|||||||+|.++..++.. .++++|+++.++..+...... .+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKK-EPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTT-CTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhc-CCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 34568999999999999988876 478889988766544332211 110
Q ss_pred -Ce-EEEEeccccCC-CCC---CCeeEEEEcCcccccCC---ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 149 -PA-VIGVLGTIKMP-YAS---RAFDMAHCSRCLIPWGA---NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 149 -~~-~~~~~d~~~lp-~~~---~sfDlV~~~~~l~~~~~---~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+ .+.+.|....+ +++ ++||+|+|..++++... +...+++++.++|||||+|++..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 14 67777876653 355 89999999999974443 34789999999999999999986
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-11 Score=114.83 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecc-ccCCCC-CCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKMPYA-SRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~-~~lp~~-~~sfDlV~~~~~l~ 177 (506)
++.+|||||||+|.++..|++.+ ++++|+++. +++.++++...+.+.+.|. ..+|++ +++||+|+|+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~---- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPE-----LLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR---- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH-----HHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC----
Confidence 34589999999999999999874 778888764 4445555556688888888 678888 8999999996
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEE
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWV 201 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li 201 (506)
.++..+++++.++|||||.|+
T Consensus 119 ---~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 ---RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---SCCSGGGGGHHHHEEEEEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCcEEE
Confidence 235678999999999999999
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-11 Score=114.77 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH-----HcC-CCeEEEEecccc-CC--CCCCCee
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL-----ERG-VPAVIGVLGTIK-MP--YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~-----~~~-~~~~~~~~d~~~-lp--~~~~sfD 168 (506)
...+|||||||+|.++..|++. .++++|+++.++..+...... ..+ .++.+...|+.. ++ +++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 3458999999999999999875 489999998877655543322 122 347788888875 66 7889999
Q ss_pred EEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 169 MAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 169 lV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.|++.+.- +|... ...+++++.++|||||.|++.+.
T Consensus 126 ~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 126 KMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99986532 33211 14799999999999999999864
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=119.08 Aligned_cols=146 Identities=22% Similarity=0.218 Sum_probs=100.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCCCceeEEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHA 421 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p~s~D~v~~ 421 (506)
.+...+..+|||+|||+|.++..|++.. ....++.+|. +.|++.|.++ |+...+...+.++ ..+|..||+|++
T Consensus 178 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~ 255 (360)
T 1tw3_A 178 AYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 255 (360)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred hCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEE
Confidence 3444556789999999999999998753 1257889999 7999988875 3321222223343 235656999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--h------------------------hHHHHHHHHhcCCceEE
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--D------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--~------------------------~~~~~~~~~~~~~w~~~ 475 (506)
.++|+++.+ .+...+|.++.|+|||||+++|.|.. + ..+++++++++.+|++.
T Consensus 256 ~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 334 (360)
T 1tw3_A 256 SFVLLNWPD-HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVE 334 (360)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred cccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEE
Confidence 999985431 12357999999999999999998754 1 24677888999999866
Q ss_pred EeecCCCC--CCCeEEEEEEec
Q 010599 476 MVDHEDGP--LVPEKILVAVKQ 495 (506)
Q Consensus 476 ~~~~~~~~--~~~~~~l~~~k~ 495 (506)
.+....+. .....++.++|+
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 335 EVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEeCCCCcccCccEEEEEEeC
Confidence 44332211 011567888874
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=111.79 Aligned_cols=137 Identities=12% Similarity=-0.034 Sum_probs=85.7
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH----HHHhcCccceeccccccC------CCCCCceeEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCEAF------STYPRTYDLI 419 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~----~~~~rg~~~~~~~~~~~~------~~~p~s~D~v 419 (506)
.....+|||+|||+|.++..|++.-.....|+++|.++.|++ .|..+.-+.. .+.++ +..+++||+|
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~---~~~d~~~~~~~~~~~~~~D~V 151 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIP---VIEDARHPHKYRMLIAMVDVI 151 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEE---ECSCTTCGGGGGGGCCCEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEE---EEcccCChhhhcccCCcEEEE
Confidence 344568999999999999999874101147999999977544 4444321111 12222 2234899999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-----------hHHHHHHHHhcCCceEEEeecCCCCCCCeE
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEK 488 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 488 (506)
+++.. .......++.++.|+|||||.++|.-... ...+ .+++.+.+|++......+.-.....
T Consensus 152 ~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~~~~~~~~~~ 225 (233)
T 2ipx_A 152 FADVA-----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLTLEPYERDHA 225 (233)
T ss_dssp EECCC-----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEECTTTSSSEE
T ss_pred EEcCC-----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEecCCccCCcE
Confidence 99433 11222456889999999999999953321 2223 4667888998665322222223466
Q ss_pred EEEEEec
Q 010599 489 ILVAVKQ 495 (506)
Q Consensus 489 ~l~~~k~ 495 (506)
+++++|+
T Consensus 226 ~v~~~~~ 232 (233)
T 2ipx_A 226 VVVGVYR 232 (233)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7777763
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-10 Score=111.88 Aligned_cols=118 Identities=11% Similarity=0.115 Sum_probs=86.2
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCC-CceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYP-RTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p-~s~D~v 419 (506)
.+......+|||+|||+|.++..|++. + ....|+++|.++++++.|.++ |+...+...+.++. .++ .+||+|
T Consensus 88 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v 166 (255)
T 3mb5_A 88 YAGISPGDFIVEAGVGSGALTLFLANIVG-PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHV 166 (255)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEE
T ss_pred hhCCCCCCEEEEecCCchHHHHHHHHHhC-CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEE
Confidence 344455678999999999999999875 1 125899999999999998876 43221222222222 234 789999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC-hhhHHHHHHHHhcCC--ce
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMR--WD 473 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~--w~ 473 (506)
++ +..+...+|.++.|+|||||.+++... .....++.+.+++.+ |.
T Consensus 167 ~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~ 215 (255)
T 3mb5_A 167 IL--------DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFM 215 (255)
T ss_dssp EE--------CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBS
T ss_pred EE--------CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 98 445667799999999999999999765 446677777777777 64
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-11 Score=113.31 Aligned_cols=102 Identities=13% Similarity=0.081 Sum_probs=76.0
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccCC--CCCCC-eeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKMP--YASRA-FDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~lp--~~~~s-fDlV~~~ 173 (506)
+.+|||+|||+|.++..++.+ .|+++|+++.++..+..+. ...+. .+.+...|...+. +++++ ||+|++.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNL-QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHH-HHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 458999999999999987665 3899999987775555443 33443 5778878876543 24678 9999998
Q ss_pred CcccccCCChHHHHHHH--HHhcCCCeEEEEEcCCC
Q 010599 174 RCLIPWGANDGRYMIEV--DRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~--~rvLkPGG~li~~~p~~ 207 (506)
..+ + ..+...++.++ .++|||||.++++..+.
T Consensus 133 ~~~-~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPF-H-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCS-S-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCC-C-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 764 3 33447788888 67899999999987554
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=118.23 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=85.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
..|.+.+.+.+.. .++.+|||||||+|.++..+++. .|+++|++ .++..+ .+.+...+.. +.+...++..+
T Consensus 49 ~~~~~~i~~~~~~--~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a-~~~~~~~~~~~~v~~~~~d~~~~ 124 (376)
T 3r0q_C 49 DAYFNAVFQNKHH--FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHA-RALVKANNLDHIVEVIEGSVEDI 124 (376)
T ss_dssp HHHHHHHHTTTTT--TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHH-HHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHhcccc--CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHH-HHHHHHcCCCCeEEEEECchhhc
Confidence 5555666665533 34569999999999999999887 48999999 677544 4444455544 78888899988
Q ss_pred CCCCCCeeEEEEcCcccccC--CChHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 PYASRAFDMAHCSRCLIPWG--ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~--~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ ++||+|+|..+.+... .....++.++.++|||||+|+++.
T Consensus 125 ~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 125 SLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred CcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 877 8999999976443322 345789999999999999998753
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=109.40 Aligned_cols=139 Identities=8% Similarity=-0.031 Sum_probs=86.4
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCC------CCCCceeEEEEc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFS------TYPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~------~~p~s~D~v~~~ 422 (506)
.....+|||+|||+|.++..|++.-.....|+++|.++.|++.+.++.- ...+...+.++. ..+.+||+|+++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 3445689999999999999998641001379999999998887765421 111122222222 234789999984
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-----------hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEE
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILV 491 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~ 491 (506)
.. .......+|.++.|+|||||++++.-... ..++++.+ ... ++......-..-.....+++
T Consensus 151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~ 223 (227)
T 1g8a_A 151 VA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFV 223 (227)
T ss_dssp CC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEE
T ss_pred CC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEE
Confidence 33 12222345999999999999999952111 12566666 555 88653322211113467888
Q ss_pred EEec
Q 010599 492 AVKQ 495 (506)
Q Consensus 492 ~~k~ 495 (506)
++|+
T Consensus 224 ~~~~ 227 (227)
T 1g8a_A 224 VRKT 227 (227)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8874
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=110.44 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=71.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc----ccCC-CCCCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC----EAFS-TYPRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~----~~~~-~~p~s~D~v~~~~ 423 (506)
..+|||+|||+|.++..|+... ....|+++|.++.|++.|.++ |+...+...+ +.++ ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 4689999999999999998831 136899999999999988875 3211122222 2233 3468999999843
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
. ......++.++.|+|||||++++.+
T Consensus 151 ~------~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 151 A------KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp T------SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred c------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2 3457789999999999999999943
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-11 Score=123.51 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=89.3
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---C-cEEEecCccchHHHHHHH------HHHcC--
Q 010599 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---N-VIAMSFAPRDSHEAQVQF------ALERG-- 147 (506)
Q Consensus 80 ~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~-v~~vdis~~dl~~~~~~~------a~~~~-- 147 (506)
.|+......+..+.+.+... ++.+|||||||+|.++..++.. . ++++|+++.++..+.... +...+
T Consensus 153 vYGEt~~~~i~~il~~l~l~--~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~ 230 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKMT--DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 230 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCCC--TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred ccCCCCHHHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45555666777777777554 3459999999999999888753 3 899999886554443321 12223
Q ss_pred -CCeEEEEeccccCCCCC--CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 148 -VPAVIGVLGTIKMPYAS--RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 148 -~~~~~~~~d~~~lp~~~--~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++.+..+|+..+|+.+ .+||+|+++..+ +.++....|.++.|+|||||.|++..
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~--F~pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFA--FGPEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTT--CCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccc--cCchHHHHHHHHHHcCCCCcEEEEee
Confidence 35788889998888754 479999998754 34556788999999999999999864
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=112.54 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=84.1
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010599 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 81 f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~ 155 (506)
|..+.+.. .+..++... .++.+|||+|||+|.++..++++ .++++|+++.++..+..+.. ..+. .+.+...
T Consensus 31 ~~~~~d~~--ll~~~~~~~-~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~-~~~~~~~v~~~~~ 106 (259)
T 3lpm_A 31 FSFSIDAV--LLAKFSYLP-IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVA-YNQLEDQIEIIEY 106 (259)
T ss_dssp BCCCHHHH--HHHHHCCCC-SSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHH-HTTCTTTEEEECS
T ss_pred ccCcHHHH--HHHHHhcCC-CCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCcccEEEEEC
Confidence 33444443 245555432 03459999999999999999887 48899998876654444333 3344 3778888
Q ss_pred ccccCC--CCCCCeeEEEEcCccccc----C---------------CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 156 GTIKMP--YASRAFDMAHCSRCLIPW----G---------------ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 156 d~~~lp--~~~~sfDlV~~~~~l~~~----~---------------~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
|...++ +++++||+|+++..+... . .+...+++++.++|||||+|++..++.
T Consensus 107 D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 179 (259)
T 3lpm_A 107 DLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE 179 (259)
T ss_dssp CGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence 887665 567899999998654322 0 012468999999999999999986543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-12 Score=128.04 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=87.5
Q ss_pred HHHHHHHHhhhcCCCCCceEEeecCc------ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC
Q 010599 337 HVNAYKKINRLLDSGRYRNIMDMNAG------FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS 410 (506)
Q Consensus 337 ~v~~y~~~~~~i~~~~~~~vLD~gcG------~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~ 410 (506)
....|.+++..+... ..+||||||| +|+.+..|.+.-.....|+++|.+++|.. ...-+..+..-+++++
T Consensus 202 y~~~Ye~lL~~l~~~-~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlp 277 (419)
T 3sso_A 202 FTPHYDRHFRDYRNQ-QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAE 277 (419)
T ss_dssp CHHHHHHHHGGGTTS-CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHH
T ss_pred HHHHHHHHHHhhcCC-CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccc
Confidence 456677777655433 4789999999 77777777653111258999999999841 1111122211123333
Q ss_pred CC------CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh------------------hhHHHHHHH
Q 010599 411 TY------PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------DEIIKVKKI 466 (506)
Q Consensus 411 ~~------p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------------~~~~~~~~~ 466 (506)
+. +++||+|+++.. + +..+...+|.|+.|+|||||+++|.|.. ..++.++++
T Consensus 278 f~~~l~~~d~sFDlVisdgs-H---~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l 353 (419)
T 3sso_A 278 FLDRIARRYGPFDIVIDDGS-H---INAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSL 353 (419)
T ss_dssp HHHHHHHHHCCEEEEEECSC-C---CHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHH
T ss_pred hhhhhhcccCCccEEEECCc-c---cchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHH
Confidence 33 489999999643 2 2346778999999999999999997643 267888899
Q ss_pred HhcCCce
Q 010599 467 VGGMRWD 473 (506)
Q Consensus 467 ~~~~~w~ 473 (506)
++.++|.
T Consensus 354 ~D~l~~~ 360 (419)
T 3sso_A 354 IDAIQHQ 360 (419)
T ss_dssp HHHHTGG
T ss_pred HHHhccc
Confidence 8888876
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=117.71 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=95.9
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh--cCccceeccccccC-CCCCCceeEEE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--RGLIGIYHDWCEAF-STYPRTYDLIH 420 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~--rg~~~~~~~~~~~~-~~~p~s~D~v~ 420 (506)
++..+...+..+|||||||+|.++..|++.. ....++.+|.+ .++..+.. .++...+.....++ ...| +||+|+
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~v~ 252 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFLREVP-HADVHV 252 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTTTCCC-CCSEEE
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCCCCCC-CCcEEE
Confidence 4444555667899999999999999998742 23578999985 55541110 12222222233344 3456 999999
Q ss_pred EccccccccCCCCH--HHHHHHHhhcccCCcEEEEEeCh-------------------------hhHHHHHHHHhcCCce
Q 010599 421 AHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDEV-------------------------DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 421 ~~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d~~-------------------------~~~~~~~~~~~~~~w~ 473 (506)
+.++|+++ .+. ..+|.++.|+|||||+|+|.|.. ...+++++++++.+|+
T Consensus 253 ~~~vlh~~---~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 329 (348)
T 3lst_A 253 LKRILHNW---GDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLR 329 (348)
T ss_dssp EESCGGGS---CHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEE
T ss_pred EehhccCC---CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCc
Confidence 99999854 344 58999999999999999997631 1356788999999999
Q ss_pred EEEeecCCCCCCCeEEEEEEe
Q 010599 474 TKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~k 494 (506)
...+... + ...-++.+++
T Consensus 330 ~~~~~~~-~--~~~~vie~~p 347 (348)
T 3lst_A 330 LDRVVGT-S--SVMSIAVGVP 347 (348)
T ss_dssp EEEEEEC-S--SSCEEEEEEE
T ss_pred eEEEEEC-C--CCcEEEEEEe
Confidence 7654442 1 2344555554
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-11 Score=109.49 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=80.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CC-
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MP- 161 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~-lp- 161 (506)
..+.+.+.+.+.....++.+|||+|||+|.++..+++.+ ++++|+++.++..+..+... .+..+.+...|... ++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~ 103 (171)
T 1ws6_A 25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRR-TGLGARVVALPVEVFLPE 103 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH-HTCCCEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHH-cCCceEEEeccHHHHHHh
Confidence 444444444442111134589999999999999998874 78899988766555444333 33467777777654 22
Q ss_pred C--CCCCeeEEEEcCcccccCCChHHHHHHHH--HhcCCCeEEEEEcCCC
Q 010599 162 Y--ASRAFDMAHCSRCLIPWGANDGRYMIEVD--RVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~--~~~sfDlV~~~~~l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p~~ 207 (506)
+ ..++||+|+++..++ .....+++.+. ++|||||.++++.+..
T Consensus 104 ~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 104 AKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred hhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 1 134899999987653 34466777777 9999999999987655
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-11 Score=111.31 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~ 159 (506)
..+.+.+.+...++ ...+|||+|||+|.++..++.. .++++|+++.++.-+..+ +...|....+.+.|...
T Consensus 35 ~ld~fY~~~~~~l~----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~-~~~~g~~~~v~~~d~~~ 109 (200)
T 3fzg_A 35 TLNDFYTYVFGNIK----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSI-IGKLKTTIKYRFLNKES 109 (200)
T ss_dssp GHHHHHHHHHHHSC----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHH-HHHSCCSSEEEEECCHH
T ss_pred hHHHHHHHHHhhcC----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCccEEEecccc
Confidence 34566677777773 2458999999999999999654 588999998777554443 44456664444456543
Q ss_pred CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEE
Q 010599 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
. .+.++||+|++..++|++ ++.+..+.++.+.|||||+||-
T Consensus 110 ~-~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 110 D-VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp H-HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEE
T ss_pred c-CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEE
Confidence 3 456789999999999877 6666777799999999998875
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-11 Score=110.41 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+. .+.+...|...++ +.+++||+|+++
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL-TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHH-HHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 3459999999999999998875 4899999887665554433 33343 5778888887775 566899999998
Q ss_pred CcccccC-----C---ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 174 RCLIPWG-----A---NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~-----~---~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
..+.+.. . +...+++++.++|||||++++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 6552211 1 124799999999999999999863
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.3e-11 Score=109.09 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=75.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C-CCceeEEEEc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y-PRTYDLIHAH 422 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~-p~s~D~v~~~ 422 (506)
...+|||+|||+|.++..+++.+. ..|+++|.++.|++.|.++ ++ ..+...+.++.. + +++||+|.++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEEC
Confidence 356899999999999998877652 4799999999999988876 32 222222333221 3 4899999998
Q ss_pred cccccccCCCCHHHHHHHHhh--cccCCcEEEEEeCh
Q 010599 423 GLFSLYKDKCNIEDILLEMDR--ILRPEGAIIIRDEV 457 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~R--vLrPgG~~ii~d~~ 457 (506)
..|.+. ..++..++.++.| +|||||.+++....
T Consensus 121 ~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 121 PPYNVD--SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 776632 1457789999999 99999999997643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=111.03 Aligned_cols=110 Identities=10% Similarity=0.007 Sum_probs=79.5
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
...+.+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+.... ...+ .+.+...|.......+
T Consensus 57 ~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~-~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 57 NLGIFMLDELDLH--KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL-SYYN-NIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTCS-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCC--CCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHH-hhcC-CeEEEECCcccccccC
Confidence 4445666666443 3459999999999999999876 4888998876554333222 2222 5777777876633346
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++||+|++..+++|+. .++.++|||||++++..++.
T Consensus 133 ~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred CCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcCC
Confidence 7899999999887653 57899999999999997654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=109.71 Aligned_cols=136 Identities=17% Similarity=0.060 Sum_probs=89.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc----cCCCCC--CceeEEEEc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE----AFSTYP--RTYDLIHAH 422 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~----~~~~~p--~s~D~v~~~ 422 (506)
..+|||+|||+|.++..|++.-.....|+++|.++.+++.|.++ |+...+...+. .++..+ ++||+|+++
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 56899999999999999988511125899999999999988876 43211221122 233444 499999985
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------hHHHHHH----HHhcCCceEEEeecCCCCCCC
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKK----IVGGMRWDTKMVDHEDGPLVP 486 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~----~~~~~~w~~~~~~~~~~~~~~ 486 (506)
.. ......+|.++.|+|||||++++.+..- ....+++ +...-+|+...+... |....
T Consensus 144 ~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~ 216 (248)
T 3tfw_A 144 AD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GTKGW 216 (248)
T ss_dssp SC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-STTCS
T ss_pred Cc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CCCCC
Confidence 42 2345679999999999999999965432 1223333 345667876655222 21123
Q ss_pred eEEEEEEec
Q 010599 487 EKILVAVKQ 495 (506)
Q Consensus 487 ~~~l~~~k~ 495 (506)
..+.+++|+
T Consensus 217 DG~~i~~~~ 225 (248)
T 3tfw_A 217 DGFTLAWVN 225 (248)
T ss_dssp EEEEEEEEC
T ss_pred CeeEEEEEe
Confidence 556666664
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-11 Score=107.92 Aligned_cols=121 Identities=12% Similarity=-0.014 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~ 157 (506)
...+.+.+.+.+.+... ..+.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. .+.+...|.
T Consensus 26 p~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~ 103 (187)
T 2fhp_A 26 PTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA-ITKEPEKFEVRKMDA 103 (187)
T ss_dssp CCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCH
T ss_pred cCHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH-HhCCCcceEEEECcH
Confidence 33455666666666311 23459999999999999988765 48999999877655544433 3333 367777776
Q ss_pred ccC----CCCCCCeeEEEEcCcccccCCChHHHHHHH--HHhcCCCeEEEEEcCCC
Q 010599 158 IKM----PYASRAFDMAHCSRCLIPWGANDGRYMIEV--DRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 158 ~~l----p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~--~rvLkPGG~li~~~p~~ 207 (506)
... ++.+++||+|+++..++ .......+..+ .++|+|||.+++..+..
T Consensus 104 ~~~~~~~~~~~~~fD~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 104 NRALEQFYEEKLQFDLVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHHHhcCCCCCEEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 542 23367899999987643 23456777777 89999999999987554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=115.62 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=82.4
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C---cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N---VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKM 160 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~---v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~l 160 (506)
...+.+.+.+... ++.+|||||||+|.++..+++. . |+++|+++.++..+.... ...+. ++.+...|....
T Consensus 62 ~~~~~l~~~l~~~--~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-ERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCC--CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCeEEEECChhhc
Confidence 4445666666543 3459999999999999999875 3 999999887665444333 33343 367777888776
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.++++||+|++..+++|+. .++.++|||||.+++...+.
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBCBG
T ss_pred cccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEECCC
Confidence 55567899999999887753 67889999999999986543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-10 Score=103.86 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=78.9
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYA 163 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~ 163 (506)
....+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+..... ..+. .+.+...+... +++
T Consensus 21 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~-~~~ 96 (192)
T 1l3i_A 21 VRCLIMCLAEPG--KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ-RHGLGDNVTLMEGDAPE-ALC 96 (192)
T ss_dssp HHHHHHHHHCCC--TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HTTCCTTEEEEESCHHH-HHT
T ss_pred HHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHH-HcCCCcceEEEecCHHH-hcc
Confidence 334455555433 3459999999999999999886 48899998866654443333 3333 56677777654 233
Q ss_pred C-CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 164 S-RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 164 ~-~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ++||+|++..++.+ ...+++++.++|+|||.+++..+
T Consensus 97 ~~~~~D~v~~~~~~~~----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 97 KIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp TSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCCCCEEEECCchHH----HHHHHHHHHHhcCCCcEEEEEec
Confidence 3 58999999876533 47899999999999999999865
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-10 Score=107.07 Aligned_cols=104 Identities=16% Similarity=0.029 Sum_probs=76.8
Q ss_pred CCCEEEEECCC-CChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCG-VASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-PYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l-p~~~~sfDlV~~~~~l 176 (506)
++.+|||+||| +|.++..+++. .++++|+++.++..+.. .+...+..+.+...|...+ ++++++||+|+++..+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR-NIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 45699999999 99999998876 48999999876655443 3344455778888886433 5667899999998765
Q ss_pred cccCCC------------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 177 IPWGAN------------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 177 ~~~~~~------------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++.... ...+++++.++|||||++++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 432110 267899999999999999997643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=113.65 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=82.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCC---ChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGV---ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~---G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~ 158 (506)
..+++.+.+.+.. .....+|||||||+ |.++..+.+. .|+++|+|+.++..+..... ....+.+..+|+.
T Consensus 62 ~~~~~~~~~~l~~-~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~ 138 (274)
T 2qe6_A 62 RKVLVRGVRFLAG-EAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVR 138 (274)
T ss_dssp HHHHHHHHHHHHT-TTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTT
T ss_pred hHHHHHHHHHHhh-ccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCC
Confidence 3444555554421 12235899999999 9887666542 58999999877765544332 2235778888875
Q ss_pred cCC-----------CCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 159 KMP-----------YASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 159 ~lp-----------~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..+ ++..+||+|+++.+++|+.++ ...+|+++.++|||||+|+++...
T Consensus 139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 421 233489999999999776553 589999999999999999998643
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=104.08 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=85.8
Q ss_pred CCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC----------CC-CceeEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST----------YP-RTYDLI 419 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~----------~p-~s~D~v 419 (506)
+..+|||+|||+|.++..|++. + ...+++++|.++ |+.. . .+ ... +.++.. ++ ++||+|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~-~~~~v~~~D~~~-~~~~--~-~~-~~~---~~d~~~~~~~~~~~~~~~~~~~D~i 92 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIG-GKGRIIACDLLP-MDPI--V-GV-DFL---QGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-TTCEEEEEESSC-CCCC--T-TE-EEE---ESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhC-CCCeEEEEECcc-cccc--C-cE-EEE---EcccccchhhhhhhccCCCCceeEE
Confidence 3458999999999999999875 1 125899999997 7654 1 11 111 122221 33 899999
Q ss_pred EEccccccccCCC--C------HHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeecC--CCCCCCeE
Q 010599 420 HAHGLFSLYKDKC--N------IEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHE--DGPLVPEK 488 (506)
Q Consensus 420 ~~~~~~~~~~~~~--~------~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~ 488 (506)
+++..+++..+.. . ...+|.++.|+|||||.+++.+.. .....+...+.. .|........ ......+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (180)
T 1ej0_A 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREV 171 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEE
T ss_pred EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceE
Confidence 9988876443210 0 157999999999999999997643 344455555554 3664432222 22334688
Q ss_pred EEEEEe
Q 010599 489 ILVAVK 494 (506)
Q Consensus 489 ~l~~~k 494 (506)
+++|++
T Consensus 172 ~~~~~~ 177 (180)
T 1ej0_A 172 YIVATG 177 (180)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 888876
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.8e-11 Score=110.08 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=82.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-C
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-M 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~-l 160 (506)
+...+.+.+.+... .++.+|||+|||+|.++..++.+ .|+++|+++.++..+..+. ...+. .+.+.+.|... +
T Consensus 39 ~~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~-~~~~~~~v~~~~~D~~~~~ 116 (202)
T 2fpo_A 39 DRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNL-ATLKAGNARVVNSNAMSFL 116 (202)
T ss_dssp HHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCSEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEECCHHHHH
Confidence 44445555544211 12458999999999999987665 4899999987775554433 33443 57788788765 5
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHH--hcCCCeEEEEEcCCC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDR--VLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~r--vLkPGG~li~~~p~~ 207 (506)
+..+++||+|++...+ + ......+++++.+ +|+|||+++++....
T Consensus 117 ~~~~~~fD~V~~~~p~-~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 117 AQKGTPHNIVFVDPPF-R-RGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp SSCCCCEEEEEECCSS-S-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred hhcCCCCCEEEECCCC-C-CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 6667799999998764 3 2445778888865 599999999986543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.7e-11 Score=121.47 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=72.5
Q ss_pred CCEEEEECCC------CChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC------CC
Q 010599 103 VRTALDTGCG------VASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA------SR 165 (506)
Q Consensus 103 ~~~VLDiGCG------~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~------~~ 165 (506)
+.+||||||| +|..+..++++ .|+++|+++.+. ....++.+.++|+.++|+. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 4689999999 66656555542 589999999762 1345688899999888877 78
Q ss_pred CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 166 AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+||+|+|..+ |+..+...+|+++.|+|||||+|++...
T Consensus 288 sFDlVisdgs--H~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDDGS--HINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEECSC--CCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEECCc--ccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999753 3345568999999999999999999753
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=113.59 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=79.1
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+++.+...+ .++.+|||+|||+|.++..+++.+ ++++|+++..+..+.. .+...+..+.+...+... ++++
T Consensus 109 ~~~~~l~~~~----~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~-n~~~~~~~v~~~~~d~~~-~~~~ 182 (254)
T 2nxc_A 109 LALKALARHL----RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRFLEGSLEA-ALPF 182 (254)
T ss_dssp HHHHHHHHHC----CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEEEESCHHH-HGGG
T ss_pred HHHHHHHHhc----CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChhh-cCcC
Confidence 3444444443 234599999999999999988774 8999999987755544 344455556666666544 2456
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|+++...++ ...++.++.++|||||++++++.
T Consensus 183 ~~fD~Vv~n~~~~~----~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 183 GPFDLLVANLYAEL----HAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp CCEEEEEEECCHHH----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEECCcHHH----HHHHHHHHHHHcCCCCEEEEEee
Confidence 78999999765432 36899999999999999999753
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=118.93 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=96.8
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
..+.+.+.+... .+.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+....+...|.... .
T Consensus 184 ~~~~ll~~l~~~--~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~~d~~~~--~ 258 (343)
T 2pjd_A 184 GSQLLLSTLTPH--TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-AANGVEGEVFASNVFSE--V 258 (343)
T ss_dssp HHHHHHHHSCTT--CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTTTT--C
T ss_pred HHHHHHHhcCcC--CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCEEEEcccccc--c
Confidence 334455666322 2348999999999999998865 4899999887665554433 34556666666666543 3
Q ss_pred CCCeeEEEEcCccccc----CCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhcccCChHHhHHHHHHHHHHHHhcce
Q 010599 164 SRAFDMAHCSRCLIPW----GANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCW 239 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~----~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~w 239 (506)
+++||+|+|+.++++- ..+...+++++.++|||||.+++..+.... + ...+...... +
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-------------~---~~~l~~~f~~--~ 320 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP-------------Y---PDVLDETFGF--H 320 (343)
T ss_dssp CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSS-------------H---HHHHHHHHSC--C
T ss_pred cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCC-------------c---HHHHHHhcCc--e
Confidence 6799999999887531 122378999999999999999998754311 0 1123333332 5
Q ss_pred eeccccCceEEEEecC
Q 010599 240 EKKSEKGEIAVWQKKV 255 (506)
Q Consensus 240 ~~~~~~~~~~i~~kp~ 255 (506)
+.+.+...+.|++...
T Consensus 321 ~~~~~~~gf~v~~~~k 336 (343)
T 2pjd_A 321 EVIAQTGRFKVYRAIM 336 (343)
T ss_dssp EEEEECSSEEEEEEEC
T ss_pred EEEeeCCCEEEEEEEe
Confidence 6666777777776543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=118.92 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=75.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CC-CceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p-~s~D~v~~~~~~ 425 (506)
..+|||+|||+|.++..+++.+. .+|+++|.+ +|++.|.++ |+...+...+.++.. +| ++||+|++..+.
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 46799999999999999998752 489999999 699988765 332212222333332 34 899999998776
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
..+.+...++.+|.++.|+|||||.+++
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 6666667889999999999999999875
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.12 E-value=4e-10 Score=106.04 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=78.3
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~ 162 (506)
....+.+.+... ++.+|||||||+|.++..+++. .++++|+++.++..+...........+.+...+......
T Consensus 65 ~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 65 MVGMMCELLDLK--PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG
T ss_pred HHHHHHHhhCCC--CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 344556666433 3459999999999999888764 488999988766555444333222246666667643222
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.+++||+|++..+++++. .++.++|||||.+++..++.
T Consensus 143 ~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECCC
Confidence 367899999999887653 58999999999999987654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=117.20 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=72.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc---cceeccccccCCCCCCceeEEEEcc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~---~~~~~~~~~~~~~~p~s~D~v~~~~ 423 (506)
.+..+|||+|||+|.++..+++.+. ..|+++|.++ |++.|.++ |+ +..+..-.+.++..+++||+|.+..
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 139 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence 3456899999999999999988752 4899999995 99988765 32 1222211233332238999999976
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
+...+.+...+..+|.++.|+|||||.++
T Consensus 140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 43334445567889999999999999998
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=113.84 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=70.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEccccccccC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
...+|||+|||+|.++..|++.- ...+|+++|.++.|++.|.+++. +.....-.+.++..+++||+|++..+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 45689999999999999998851 11479999999999999998862 111111113344344899999985442
Q ss_pred CCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 431 KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
..|.|+.|+|||||++++.+..
T Consensus 159 -----~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 -----CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp -----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred -----hhHHHHHHhcCCCcEEEEEEcC
Confidence 2689999999999999997654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-10 Score=109.34 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~ 157 (506)
...+.+++.+.+.+. .++.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+. .+.+...|.
T Consensus 93 ~~te~l~~~~l~~~~---~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~-~~~~~~v~~~~~d~ 168 (276)
T 2b3t_A 93 PDTECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ-HLAIKNIHILQSDW 168 (276)
T ss_dssp TTHHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH-HHTCCSEEEECCST
T ss_pred chHHHHHHHHHHhcc---cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEEcch
Confidence 445777777777774 23458999999999999999853 58999998876655544333 3344 477777776
Q ss_pred ccCCCCCCCeeEEEEcCccccc------------C------------CChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 158 IKMPYASRAFDMAHCSRCLIPW------------G------------ANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~------------~------------~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ++++++||+|+++..++.. . .....++.++.++|||||++++..+
T Consensus 169 ~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 169 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred hh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 54 3446789999998544221 1 1125788999999999999999854
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=104.44 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+|||+|||+|.++..+++. .++++|+++ ++.. ..+.+...|....+ +++++||
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 3459999999999999988764 488999988 5521 34677777877766 6778999
Q ss_pred EEEEcCcccccCCCh-----------HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 169 MAHCSRCLIPWGAND-----------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 169 lV~~~~~l~~~~~~~-----------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+|+++.++++ .... ..+++++.++|+|||.+++..+.
T Consensus 91 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 91 VVMSDMAPNM-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEEECCCccc-cCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999887643 3444 58899999999999999997653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.8e-11 Score=112.09 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=73.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc---ccCCCCCCCeeEEE
Q 010599 100 NGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IKMPYASRAFDMAH 171 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~---~~lp~~~~sfDlV~ 171 (506)
-.++.+|||+|||+|.++..|++. .|.++|+++.++..+. +.+.++ .++.....+. ...++..+++|+|+
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~-~ni~~V~~d~~~p~~~~~~~~~vDvVf 152 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDR-RNIFPILGDARFPEKYRHLVEGVDGLY 152 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTC-TTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhh-cCeeEEEEeccCccccccccceEEEEE
Confidence 345669999999999999999875 3899999987775443 333332 2445555554 34567778999999
Q ss_pred EcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 172 CSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... ...+...++.++.++|||||+++++.
T Consensus 153 ~d~~---~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 153 ADVA---QPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp ECCC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eecc---CChhHHHHHHHHHHhccCCCEEEEEE
Confidence 8543 23455789999999999999999974
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-10 Score=105.07 Aligned_cols=132 Identities=9% Similarity=0.060 Sum_probs=81.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC--------------Ccee
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--------------RTYD 417 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p--------------~s~D 417 (506)
+..+|||+|||+|+++..|++.+ ..|+++|.++.. .. .+ +...+.++...+ ++||
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~---~~V~gvD~~~~~-~~---~~----v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLA---RKIISIDLQEME-EI---AG----VRFIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTC---SEEEEEESSCCC-CC---TT----CEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEEEeecCCHHHHHHHHcC---CcEEEEeccccc-cC---CC----eEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence 35689999999999999999873 589999999542 10 12 122223333221 4999
Q ss_pred EEEEccccccccCC--------CCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEE-EeecC-CCCCCC
Q 010599 418 LIHAHGLFSLYKDK--------CNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK-MVDHE-DGPLVP 486 (506)
Q Consensus 418 ~v~~~~~~~~~~~~--------~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~-~~~~~-~~~~~~ 486 (506)
+|.|+........+ ...+.+|.++.|+|||||.|++..-. +....+...++.. +... +.... .-+.+.
T Consensus 94 ~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~ 172 (191)
T 3dou_A 94 DVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSS 172 (191)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CC
T ss_pred EEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCc
Confidence 99996544322111 11346899999999999999985432 2334555555543 5432 32222 222358
Q ss_pred eEEEEEEec
Q 010599 487 EKILVAVKQ 495 (506)
Q Consensus 487 ~~~l~~~k~ 495 (506)
|.+++|++-
T Consensus 173 E~y~v~~~~ 181 (191)
T 3dou_A 173 EIYIMFFGF 181 (191)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEeee
Confidence 999999874
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=115.77 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=85.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.+.+.+.+... ++.+|||||||+|.++..+++. .|+++|+++ ++ ..+.+.....+. .+.+...+...+
T Consensus 36 ~~y~~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 36 GTYQRAILQNHTDF--KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHHHTGGGT--TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccC--CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcchhhC
Confidence 45666677666433 3459999999999999999876 489999985 55 333444444454 477888888888
Q ss_pred CCCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 PYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ ++||+|++..+++|+... ....+.++.++|||||.+++..
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 765 589999999887776543 3678889999999999999653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=109.61 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=86.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc----ccCCCCC-----CceeEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC----EAFSTYP-----RTYDLI 419 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~----~~~~~~p-----~s~D~v 419 (506)
..+|||+|||+|.++..|++.-.....|+++|.++.|++.|.++ |+...+...+ +.++.++ ++||+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 45899999999999999987511126899999999999988776 3321111112 2222222 799999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------hHHHHHH----HHhcCCceEEEeecCCCC
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKK----IVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~----~~~~~~w~~~~~~~~~~~ 483 (506)
++... ......++.++.|+|||||++++.|..- ....++. +...-+|+.......+
T Consensus 145 ~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d-- 216 (225)
T 3tr6_A 145 YIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGD-- 216 (225)
T ss_dssp EECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTT--
T ss_pred EECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEcCC--
Confidence 97442 2356779999999999999999976531 1223333 3445567776664443
Q ss_pred CCCeEEEEEEec
Q 010599 484 LVPEKILVAVKQ 495 (506)
Q Consensus 484 ~~~~~~l~~~k~ 495 (506)
.+++++|+
T Consensus 217 ----G~~~~~k~ 224 (225)
T 3tr6_A 217 ----GLTLARKK 224 (225)
T ss_dssp ----CEEEEEEC
T ss_pred ----ccEEEEEC
Confidence 35666653
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.1e-11 Score=112.90 Aligned_cols=115 Identities=14% Similarity=0.024 Sum_probs=80.8
Q ss_pred CceEEeecCcccHHHHHHHhC---CCeEEEEeecCCCcccHHHHHhcCccceeccccccC------CCCC-CceeEEEEc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF------STYP-RTYDLIHAH 422 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~---~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~------~~~p-~s~D~v~~~ 422 (506)
..+|||+|||+|..+..|++. -.....|+++|.++.|++.|.... ..+...+.+. +..+ .+||+|+++
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~--~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDM--ENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGC--TTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccC--CceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 358999999999999998774 011358999999999998876321 1122222332 2233 379999985
Q ss_pred cccccccCCCCHHHHHHHHhh-cccCCcEEEEEeChh-----hHHHHHHHHhcC--CceEE
Q 010599 423 GLFSLYKDKCNIEDILLEMDR-ILRPEGAIIIRDEVD-----EIIKVKKIVGGM--RWDTK 475 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~R-vLrPgG~~ii~d~~~-----~~~~~~~~~~~~--~w~~~ 475 (506)
.. | .+...+|.|+.| +|||||++++.|... ....+.++++.. +|++.
T Consensus 160 ~~-----~-~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 160 NA-----H-ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp SS-----C-SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred Cc-----h-HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 54 1 367889999998 999999999987421 224678888877 57753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=112.08 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=78.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc------------Cccceecccccc----CCC-CC-C
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER------------GLIGIYHDWCEA----FST-YP-R 414 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r------------g~~~~~~~~~~~----~~~-~p-~ 414 (506)
..+|||+|||+|.++..|+..+. ..+|+++|.++.|++.|.++ ++ ..+...+.+ ++. ++ +
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCTT
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcccc
Confidence 45799999999999999987531 25899999999999988664 43 122222233 221 33 8
Q ss_pred ceeEEEEccccccc-----cCCCCHHHHHHHHhhcccCCcEEEE-EeChhhHHHHHHHHhcCCc
Q 010599 415 TYDLIHAHGLFSLY-----KDKCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGMRW 472 (506)
Q Consensus 415 s~D~v~~~~~~~~~-----~~~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~~w 472 (506)
++|.|+...-=... ..+.--..+|.++.|+|||||.|++ +|.....+.+.+.+....+
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 89988752100000 0011115799999999999999999 5666666777766666554
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-10 Score=105.01 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=80.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCe-EEEEeecCCCcccHHHHHhcCccceeccccccCC---------------------
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLW-VMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS--------------------- 410 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~-~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~--------------------- 410 (506)
..+|||+|||+|.++..|++.... ...|+++|.++ |.. ..++ ...+.-.+..+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~-~~~---~~~v-~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI-MDP---IPNV-YFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC-CCC---CTTC-EEEECCTTTTSSCCC-----------CHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc-cCC---CCCc-eEEEccccchhhhhhccccccccccchhhHHH
Confidence 468999999999999999874210 26899999996 321 0111 11110011121
Q ss_pred ---CCC-CceeEEEEccccccccCC-CCH-------HHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCce-EEE
Q 010599 411 ---TYP-RTYDLIHAHGLFSLYKDK-CNI-------EDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD-TKM 476 (506)
Q Consensus 411 ---~~p-~s~D~v~~~~~~~~~~~~-~~~-------~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~-~~~ 476 (506)
.++ ++||+|.|+..+++.... .+. ..+|.++.|+|||||.+++.... +....+...+... |. +..
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~v~~ 176 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQLVHT 176 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEEEEE
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-HheEEE
Confidence 024 799999998776542111 111 24899999999999999996432 2344555555553 44 333
Q ss_pred eecC-CCCCCCeEEEEEEe
Q 010599 477 VDHE-DGPLVPEKILVAVK 494 (506)
Q Consensus 477 ~~~~-~~~~~~~~~l~~~k 494 (506)
.... ..+...|.+++|++
T Consensus 177 ~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 177 TKPKASRNESREIYLVCKN 195 (201)
T ss_dssp CCCC-----CCEEEEEEEE
T ss_pred ECCcccCCcCceEEEEEec
Confidence 2222 22335688999986
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=115.18 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=82.1
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~ 163 (506)
..+.+.++....++.+|||||||+|.++..++++ .++++|++ .++..+...... .+. .+.+...|....+++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARI-QGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHH-HTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHh-cCCCcceEEEecccccCCCC
Confidence 3444444330123459999999999999999875 47888887 555544433332 233 377888888777776
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.+ ||+|++..+++++.+.. ..+++++.++|+|||++++..+.
T Consensus 231 ~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 231 ND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp SC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 54 99999999998874322 68999999999999999987643
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.5e-11 Score=113.62 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecC-ccchHHHH--HHHHHHcCC-CeEEEEeccccCCCC-CCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFA-PRDSHEAQ--VQFALERGV-PAVIGVLGTIKMPYA-SRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis-~~dl~~~~--~~~a~~~~~-~~~~~~~d~~~lp~~-~~sfDlV~~ 172 (506)
++.+|||||||+|.++..|+++ .|+++|+| +.++..+. .+.+.+.+. ++.+...++..+|.. .+.+|.|++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 3458999999999999999853 38999999 44443321 112223344 477888888888632 256777776
Q ss_pred cCccc----ccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLI----PWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~----~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++... +...+...+++++.|+|||||+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 54321 222234678999999999999999943
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=116.36 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
...+|||||||+|.++..++++ .++++|+ +.++..+..... +.+ ..+.+...|.. .+++. +||+|++..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFL-DTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhh-hcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 3469999999999999999874 3677888 655544433332 333 34788888876 45555 8999999999
Q ss_pred ccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010599 176 LIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|.++. ..+|+++.++|||||+|++..+
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 98876532 7899999999999999999754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.5e-10 Score=114.62 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=83.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~ 163 (506)
+.+.+.++. ..+.+|||||||+|.++..++++ .++++|+ +.++..+...... .+. .+.+...|....|++
T Consensus 180 ~~l~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 180 QLLLEEAKL--DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE-KGVADRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHCCC--TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH-TTCTTTEEEEECCTTTSCCC
T ss_pred HHHHHhcCC--CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHh-cCCCCCEEEEeCccccCCCC
Confidence 445555543 34569999999999999999875 4789999 8777665544433 333 378888888877776
Q ss_pred CCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEEc
Q 010599 164 SRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+. |+|++..++++|.++ ...+|+++.++|||||++++..
T Consensus 256 ~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 256 EA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp CC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 54 999999999887543 3789999999999999998865
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.5e-11 Score=120.50 Aligned_cols=110 Identities=10% Similarity=0.050 Sum_probs=80.5
Q ss_pred HHHhhhcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhc-----------Cc-cceecccccc
Q 010599 342 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----------GL-IGIYHDWCEA 408 (506)
Q Consensus 342 ~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~r-----------g~-~~~~~~~~~~ 408 (506)
..++..+......+|||||||+|.++..++.. + ...|+++|.++.|+++|.+. |+ ...+...+.+
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g--~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 44455455556678999999999999888753 3 23699999999999988752 33 1334444566
Q ss_pred CCCCC-----CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 409 FSTYP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 409 ~~~~p-----~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+-..| ..||+|+++..+. ..++...|.|+.|+|||||.||+.+..
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F----~pdl~~aL~Ei~RvLKPGGrIVssE~f 290 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF----GPEVDHQLKERFANMKEGGRIVSSKPF 290 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC----CHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred ccCCccccccCCccEEEEccccc----CchHHHHHHHHHHcCCCCcEEEEeecc
Confidence 65544 4799999976542 347788999999999999999997654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=111.35 Aligned_cols=124 Identities=11% Similarity=0.035 Sum_probs=87.3
Q ss_pred eEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C-cEEEecCccchHHHHHHHHHHcC
Q 010599 71 VFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N-VIAMSFAPRDSHEAQVQFALERG 147 (506)
Q Consensus 71 ~~~f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~-v~~vdis~~dl~~~~~~~a~~~~ 147 (506)
.|.+......|..........+.+.+ .++.+|||+|||+|.++..+++. . |+++|+++.++..+..+ +...+
T Consensus 98 ~f~~d~~~~~f~~~~~~~~~~l~~~~----~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n-~~~n~ 172 (278)
T 2frn_A 98 KYKLDVAKIMFSPANVKERVRMAKVA----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVEN-IHLNK 172 (278)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHC----CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHH-HHHTT
T ss_pred EEEEEccceeEcCCcHHHHHHHHHhC----CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHHcC
Confidence 34443333444444333344566655 23459999999999999999875 3 89999998777555443 34444
Q ss_pred CC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 148 VP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 148 ~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. +.+...|+..++. +++||+|++... .....++.++.++|||||.+++...
T Consensus 173 ~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 173 VEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp CTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 43 6788888887776 779999999643 2336789999999999999999753
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.2e-10 Score=106.71 Aligned_cols=109 Identities=12% Similarity=0.107 Sum_probs=81.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHH-cCCCeEEEEeccccCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~-~~~~~~~~~~d~~~lp~~ 163 (506)
..+.+.+... ++.+|||+|||+|.++..+++. .++++|+++.++..+....... ....+.+...|....+++
T Consensus 86 ~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLDLA--PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcCCC--CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 3455555433 4459999999999999988865 4889999887665555444333 223577888888888888
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++||+|++.. +++..++.++.++|||||++++..+.
T Consensus 164 ~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 164 EAAYDGVALDL------MEPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp TTCEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred CCCcCEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 88999999832 34568899999999999999998764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-11 Score=118.02 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=66.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc----c-eeccc--cccCCCCC-CceeEEEEcc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----G-IYHDW--CEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~----~-~~~~~--~~~~~~~p-~s~D~v~~~~ 423 (506)
+..+|||+|||+|+++..+++. ..|+++|.++ |+..+.++... + .+... +.++..+| ++||+|.|+.
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 3568999999999999999886 3699999996 75433322211 0 12222 34554455 8999999976
Q ss_pred ccccccCCC-CH---HHHHHHHhhcccCCc--EEEEEeC
Q 010599 424 LFSLYKDKC-NI---EDILLEMDRILRPEG--AIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~-~~---~~~l~e~~RvLrPgG--~~ii~d~ 456 (506)
+ .+..+.. +. ..+|.++.|+||||| .|++...
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 6 3222211 11 138999999999999 9999654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=118.67 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC--CCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM--PYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l--p~~~~sfDlV~~~ 173 (506)
...+|||||||+|.++..++++ .++++|+ +.++..+.. .+.+.+. .+.+...|.... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRK-QTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHH-HHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHH-HHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 3469999999999999999874 3777887 544433332 2222232 477888888764 566 789999999
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++++|.++. ..+|+++.++|||||+|++..
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9998886533 588999999999999999865
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-10 Score=115.98 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=90.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~ 428 (506)
..+|||+|||+|.++..+++.+. ..+|+++|.++.|++.+.++ ++...+ .....++..+++||+|.++..|++.
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCSS
T ss_pred CCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCcccC
Confidence 45799999999999999987531 24799999999999988876 221111 1122233335899999999988742
Q ss_pred c--CCCCHHHHHHHHhhcccCCcEEEEEeC--hhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 429 K--DKCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 429 ~--~~~~~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
. +......+|.++.|+|||||.++|... .++...++.++.. ++... .. ...+++.++|
T Consensus 275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~--~~~~~--~~----~gf~v~~~~k 336 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF--HEVIA--QT----GRFKVYRAIM 336 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC--CEEEE--EC----SSEEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc--eEEEe--eC----CCEEEEEEEe
Confidence 2 123457899999999999999999653 3455666666653 23222 11 2577777766
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=108.92 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=72.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceecccccc----CCCC-CCc-eeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEA----FSTY-PRT-YDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~----~~~~-p~s-~D~v~~ 421 (506)
..+|||+|||+|.++..++..+. ..|+++|.++.|++.|.++ |+. ..+...+.+ ++.. +++ ||+|.+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 35799999999999998776652 4799999999999998875 220 111222222 2222 378 999999
Q ss_pred ccccccccCCCCHHHHHHHH--hhcccCCcEEEEEeChh
Q 010599 422 HGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEVD 458 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~~ 458 (506)
+..|. ......++.++ .|+|||||.+++.....
T Consensus 132 ~~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH----FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 77754 34567889999 78999999999976543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=107.86 Aligned_cols=132 Identities=10% Similarity=0.052 Sum_probs=86.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceecccc----ccCCCC-CCceeEEEEc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWC----EAFSTY-PRTYDLIHAH 422 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~----~~~~~~-p~s~D~v~~~ 422 (506)
..+|||+|||+|..+..|++.-.....|+++|.+++|++.|.++ |+. ..+...+ +.++.+ +++||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34899999999999999986310125899999999999988765 332 1222222 223345 5899999985
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------hHHHHHHHHhcC----CceEEEeecCCCCCCC
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKKIVGGM----RWDTKMVDHEDGPLVP 486 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~~~~~~----~w~~~~~~~~~~~~~~ 486 (506)
.. ......++.++.|+|||||++++.|..- ....++++.+.+ ++++.+....|
T Consensus 137 ~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gd----- 205 (221)
T 3dr5_A 137 VS------PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGA----- 205 (221)
T ss_dssp CC------TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTT-----
T ss_pred Cc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccc-----
Confidence 43 2355679999999999999999944321 122334443333 45555554443
Q ss_pred eEEEEEEecc
Q 010599 487 EKILVAVKQY 496 (506)
Q Consensus 487 ~~~l~~~k~~ 496 (506)
.+++++|.+
T Consensus 206 -Gl~~~~~~~ 214 (221)
T 3dr5_A 206 -GLTVVTKAL 214 (221)
T ss_dssp -CEEEEEECC
T ss_pred -hHHHHHHHH
Confidence 478888875
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=9.8e-10 Score=107.93 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=86.4
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCC-CceeEEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYP-RTYDLIHA 421 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p-~s~D~v~~ 421 (506)
+......+|||+|||+|.++..|++.-....+|+++|.++.+++.|.++ |+...+...+.++. .++ ++||+|++
T Consensus 108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~ 187 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL 187 (277)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEE
Confidence 3344456899999999999999887511125899999999999998876 33122222222222 144 78999998
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEE
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~ 475 (506)
+..++..+|.++.|+|||||.+++.+.. ....++.+.+...+|...
T Consensus 188 --------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~ 234 (277)
T 1o54_A 188 --------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRI 234 (277)
T ss_dssp --------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEE
T ss_pred --------CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcee
Confidence 3445567999999999999999998874 456677777777888744
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-10 Score=114.98 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=80.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPYA 163 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~lp~~ 163 (506)
..+.+.++.. ...+|||||||+|.++..++++ .++++|+ +.++..+..... +.+ ..+.+...|.. .+++
T Consensus 192 ~~l~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~l~~~v~~~~~d~~-~~~p 266 (369)
T 3gwz_A 192 GQVAAAYDFS--GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT-GRGLADRCEILPGDFF-ETIP 266 (369)
T ss_dssp HHHHHHSCCT--TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-TCCC
T ss_pred HHHHHhCCCc--cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh-hcCcCCceEEeccCCC-CCCC
Confidence 3445555432 3469999999999999999875 3677888 655544443333 233 34778888876 5666
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +||+|++..++++|.+.. ..+|+++.++|||||+|++..
T Consensus 267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 6 899999999998875432 379999999999999999964
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=8.4e-11 Score=107.22 Aligned_cols=118 Identities=11% Similarity=-0.021 Sum_probs=79.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK- 159 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~- 159 (506)
+...+.+.+.+.. ...+.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+. .+.+...|...
T Consensus 16 ~~~~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~ 93 (177)
T 2esr_A 16 DKVRGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERA 93 (177)
T ss_dssp --CHHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcHHHh
Confidence 3344455555531 123458999999999999999876 38899998866644433 3333343 36777777655
Q ss_pred CCCCCCCeeEEEEcCcccccCCChHHHHHHHH--HhcCCCeEEEEEcCCC
Q 010599 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVD--RVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p~~ 207 (506)
++..+++||+|+++..++. ......+..+. ++|||||++++..+..
T Consensus 94 ~~~~~~~fD~i~~~~~~~~--~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 94 IDCLTGRFDLVFLDPPYAK--ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHBCSCEEEEEECCSSHH--HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHhhcCCCCEEEECCCCCc--chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 3444567999999866521 22356777776 9999999999987544
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.08 E-value=6e-10 Score=112.38 Aligned_cols=110 Identities=11% Similarity=0.069 Sum_probs=82.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp~~~ 164 (506)
..+.+.++... .+|||||||+|.++..++++ .++++|+ +.++..+........ ...+.+...|... +++
T Consensus 158 ~~~~~~~~~~~---~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 158 HEIPRLLDFRG---RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHSCCTT---CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred HHHHHhCCCCC---CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence 34455554332 69999999999999999865 4889999 888866655443321 2347778788765 555
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010599 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
++||+|++..++++|.+.. ..+++++.++|||||++++...
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6799999999998875432 4899999999999999999753
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.2e-10 Score=106.19 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=78.5
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKM 160 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~-----~~~~~~~~~d~~~l 160 (506)
.+.+.+.....++.+|||||||+|.++..+++. .++++|+++.++..+........ ...+.+...|....
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 344444312234569999999999999988764 48999998876655544333211 12577777887766
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+...++||+|++...+.++ +.++.++|||||+++++.++.
T Consensus 146 ~~~~~~fD~i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 146 YAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp CGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEESCT
T ss_pred cccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEecC
Confidence 6567789999998876553 478999999999999987544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=111.58 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=85.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC-----CCceeEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY-----PRTYDLI 419 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~-----p~s~D~v 419 (506)
.++|||+|||+|..+..|++.-.....|+++|.+++|++.|.++ |+...+...+.+ ++.+ +++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 46899999999999999987411125899999999999877655 432222222222 2223 5799999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------hHHHHHH----HHhcCCceEEEeecCCCC
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKK----IVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~----~~~~~~w~~~~~~~~~~~ 483 (506)
+++.. ......+|.++.|+|||||++++.|..- ....+++ +...-++++.+....|
T Consensus 141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d-- 212 (242)
T 3r3h_A 141 FIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIAD-- 212 (242)
T ss_dssp EEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSS--
T ss_pred EEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccC--
Confidence 98543 2345678999999999999999965431 1222333 3445567766665443
Q ss_pred CCCeEEEEEEe
Q 010599 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
.+++++|
T Consensus 213 ----G~~~~~k 219 (242)
T 3r3h_A 213 ----GMFLVQP 219 (242)
T ss_dssp ----CEEEEEE
T ss_pred ----ceEEEEE
Confidence 3566665
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=112.93 Aligned_cols=106 Identities=14% Similarity=0.016 Sum_probs=75.6
Q ss_pred CCCCceEEeecCcc--cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceeccccccCCCC---------CCc
Q 010599 350 SGRYRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTY---------PRT 415 (506)
Q Consensus 350 ~~~~~~vLD~gcG~--G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~~~~~~~---------p~s 415 (506)
..+++.|||+|||+ +++...++..-.....|+++|.|+.||..|+++-. .+..+..+.++... .++
T Consensus 76 ~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~ 155 (277)
T 3giw_A 76 EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT 155 (277)
T ss_dssp TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc
Confidence 34589999999998 33333333210112589999999999999887621 12334444555432 255
Q ss_pred ee-----EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 416 YD-----LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 416 ~D-----~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|| .|.++.+|+++.+..++..+|.++.++|+|||+|+|++
T Consensus 156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 66 58889999988866668899999999999999999985
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-10 Score=112.90 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=73.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CC-CceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p-~s~D~v~~~~~~ 425 (506)
..+|||+|||+|.++..+++.+. ..|+++|.+ .|+..|.++ |+...+.....++.. +| ++||+|++..+.
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 45799999999999999988752 489999999 799987765 332212222233322 34 899999998666
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
..+.+...++.+|.++.|+|||||.+++
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 6555666788999999999999999984
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-10 Score=113.08 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=81.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.+.+.+.+... ++.+|||||||+|.++..+++. .++++|+++ ++.. +.+.+...+. .+.+...++..+
T Consensus 24 ~~y~~ai~~~~~~~--~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~-a~~~~~~~~~~~~i~~~~~d~~~~ 99 (328)
T 1g6q_1 24 LSYRNAIIQNKDLF--KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEM-AKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHH-HHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhHhhc--CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHH-HHHHHHHcCCCCCEEEEECchhhc
Confidence 44545554444222 3458999999999999999876 489999984 5543 3344444444 377888888888
Q ss_pred CCCCCCeeEEEEcCccccc--CCChHHHHHHHHHhcCCCeEEEE
Q 010599 161 PYASRAFDMAHCSRCLIPW--GANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~--~~~~~~~l~e~~rvLkPGG~li~ 202 (506)
++++++||+|++..+..++ ......++.++.++|||||.++.
T Consensus 100 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 8888899999997543332 33457899999999999999984
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=109.14 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---MPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~---lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|++. .++++|+++.++. .+.+.+..+ ..+.+...|+.. +++.+++||+|++.
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR-DLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHH-HHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHH-HHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4569999999999999999864 4889999886543 344555554 457777778765 45567899999996
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010599 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ..+. ..++.++.++|||||+++++..
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 53 2223 5568899999999999999754
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=103.72 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=69.9
Q ss_pred CCCCCEEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCC---CCCCeeEEEEcCc
Q 010599 100 NGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPY---ASRAFDMAHCSRC 175 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~~v~~vdis~~dl~~~~~~~a~~~~-~~~~~~~~d~~~lp~---~~~sfDlV~~~~~ 175 (506)
-+++.+|||||||. + ++ |+++.+++.|+++. ..+.+.+.|+..+++ ++++||+|+|+.+
T Consensus 10 ~~~g~~vL~~~~g~-----------v-~v-----D~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 72 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-----------S-PV-----EALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV 72 (176)
T ss_dssp CCTTSEEEEEECTT-----------S-CH-----HHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEecCCc-----------e-ee-----eCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECCh
Confidence 34567999999996 1 13 55666666666553 247788888888887 7899999999999
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++|+.++...+++++.|+|||||+|++..+
T Consensus 73 l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 73 PGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp TTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 977536679999999999999999999654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=115.31 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|.++..+++. .++++|+ +.++..+..... ..+. .+.+...|... +++. .||+|++..+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 4569999999999999999875 3677787 655544443332 3333 47788788754 4444 4999999999
Q ss_pred ccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010599 176 LIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++|.+.. ..+++++.++|||||++++...
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 98875432 4899999999999999998765
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=9e-11 Score=107.01 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=72.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCCCceeEEEEcc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYPRTYDLIHAHG 423 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p~s~D~v~~~~ 423 (506)
...+|||+|||+|.++..+++.+ ..+|+++|.++.|++.|.++ ++...+...+.+ ++..++.||+|+++.
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35689999999999999998874 25899999999999988775 221112222222 233457899999976
Q ss_pred ccccccCCCCHHHHHHHHh--hcccCCcEEEEEeCh
Q 010599 424 LFSLYKDKCNIEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
.|. ....+.++..+. |+|||||.+++....
T Consensus 109 ~~~----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYA----KETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SSH----HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCC----cchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 653 123456777776 999999999997654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=106.26 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=87.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc----ccCCCCC-----CceeE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC----EAFSTYP-----RTYDL 418 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~----~~~~~~p-----~s~D~ 418 (506)
+..+|||+|||+|.++..|++.-.....|+++|.++.|++.|.++ |+...+...+ +.++.++ ++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 356899999999999999987311125899999999999998874 3321121112 2244444 69999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh--hHHHHHHHHhcCCceEEEeec-CCCCCCCeEEEEEEec
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVGGMRWDTKMVDH-EDGPLVPEKILVAVKQ 495 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~l~~~k~ 495 (506)
|+++....++. +...++.++ |+|||||.+++.|... ..+-++.+...-+++...+.. .........+.++++.
T Consensus 138 V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~ 213 (221)
T 3u81_A 138 VFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 213 (221)
T ss_dssp EEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred EEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence 99976665332 334567777 9999999999976532 222233334455677665432 1111123445666553
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=107.99 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|++. .++++|+++.++..+. +.+... .++.+...|... +++. ++||+|++.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~-~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~ 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAER-ENIIPILGDANKPQEYANIV-EKVDVIYED 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHH-HHhhcC-CCeEEEECCCCCcccccccC-ccEEEEEEe
Confidence 4569999999999999998865 3889999886554333 222222 457777788776 7776 789999932
Q ss_pred CcccccCCCh---HHHHHHHHHhcCCCeEEEEE
Q 010599 174 RCLIPWGAND---GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 174 ~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~ 203 (506)
. .++ ..++.++.++|||||+++++
T Consensus 151 -----~-~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 -----V-AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -----C-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----c-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 233 67799999999999999996
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.4e-10 Score=105.37 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=75.9
Q ss_pred HHHHhhCC-CCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--
Q 010599 90 DQLASVIP-IKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-- 161 (506)
Q Consensus 90 ~~i~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp-- 161 (506)
..+.+.+. ....++.+|||+|||+|.++..+++. .|+++|+++.++.. .++.+.++ .++.+.+.|+....
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~ 140 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSY 140 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGT
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhh
Confidence 34455543 22345669999999999999988864 48999999876533 44555554 45777777875432
Q ss_pred -CCCCCeeEEEEcCcccccCCChH-HHHHHHHHhcCCCeEEEEEcC
Q 010599 162 -YASRAFDMAHCSRCLIPWGANDG-RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 -~~~~sfDlV~~~~~l~~~~~~~~-~~l~e~~rvLkPGG~li~~~p 205 (506)
...++||+|++.... ++.. .++..+.++|||||+|+++..
T Consensus 141 ~~~~~~~D~I~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 141 KSVVENVDVLYVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp TTTCCCEEEEEECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccccceEEEEecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 124689999997543 3344 445566669999999999854
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=114.49 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=77.3
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCcee
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYD 417 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~D 417 (506)
++..+...+..+|||+|||+|.++..+++.+. ..|+++|.+ .|+..|.++ |+...+...+.++..+ +++||
T Consensus 42 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s-~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 42 ILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAS-TMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCH-HHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 33334334456899999999999999988652 489999999 588877665 3322222233444433 48999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+|++..++.++. ...+...+.++.|+|||||.+++.
T Consensus 119 ~Ivs~~~~~~~~-~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLF-NERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBT-TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCC-hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999988877655 345677889999999999999863
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=108.68 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=72.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCC-C--CCceeEEEEcc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST-Y--PRTYDLIHAHG 423 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~-~--p~s~D~v~~~~ 423 (506)
+...+..+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++.. .+.+...+.++.. + +++||+|++..
T Consensus 66 ~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 142 (231)
T 1vbf_A 66 LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA 142 (231)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECC
Confidence 334455689999999999999998865 589999999999999988731 1111112222221 2 38999999998
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++++.. .++.|+|||||.+++....
T Consensus 143 ~~~~~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 143 TAPTLL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred cHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence 887543 4799999999999998654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.1e-10 Score=104.59 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=70.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccCCCCCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~~~~p~s~D~v~~~~~ 424 (506)
..+|||+|||+|.++..|++.-....+|+++|.++.|++.|.++ |+.. ..+ +..+.++..++ ||+|+++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~- 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC- 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET-
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC-
Confidence 45899999999999999987511125899999999999988765 3311 111 11122344557 99999852
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
...+...++.++.|+|||||.+++.+
T Consensus 135 -----~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 -----DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp -----TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred -----ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 23467889999999999999999965
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=106.52 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=72.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC---CCCceeEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST---YPRTYDLIH 420 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~---~p~s~D~v~ 420 (506)
+...+..+|||+|||+|.++..|++.+ .+|+++|.++.+++.|.++ |+. .+...+.++.. .+++||+|+
T Consensus 73 l~~~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~i~ 148 (210)
T 3lbf_A 73 LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDAII 148 (210)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccEEE
Confidence 344556789999999999999998864 5899999999999998876 321 12222222222 238999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++.++++... ++.++|||||++++.-..
T Consensus 149 ~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 149 VTAAPPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred EccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 9988875552 689999999999997654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-10 Score=106.51 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=77.3
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA 163 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~ 163 (506)
....+.+.+... ++.+|||||||+|.++..+++. .++++|+++..+..+..... ..+. ++.+...|. ..+++
T Consensus 79 ~~~~~~~~l~~~--~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~-~~~~~ 154 (235)
T 1jg1_A 79 MVAIMLEIANLK--PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDG-SKGFP 154 (235)
T ss_dssp HHHHHHHHHTCC--TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCG-GGCCG
T ss_pred HHHHHHHhcCCC--CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEECCc-ccCCC
Confidence 344555555433 3458999999999999998874 68999998866654443333 3333 466666665 44555
Q ss_pred CC-CeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 164 SR-AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 164 ~~-sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++ .||+|++..++.++. .++.++|||||.+++..+..
T Consensus 155 ~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 155 PKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEecC
Confidence 44 499999998876542 47899999999999988654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-10 Score=105.23 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=77.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHHc-----CCCeEEEE
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGV 154 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~dl~~~~~~~a~~~-----~~~~~~~~ 154 (506)
..+.+.+.....++.+|||||||+|.++..+++. .++++|+++..+..+........ ...+.+..
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 3444554211234569999999999999888762 58999999877665554443321 23567777
Q ss_pred eccccCCCCC-CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 155 LGTIKMPYAS-RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 155 ~d~~~lp~~~-~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.|... ++++ ++||+|++..+++++ +.++.++|||||++++...+
T Consensus 152 ~d~~~-~~~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 152 GDGRK-GYPPNAPYNAIHVGAAAPDT-------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SCGGG-CCGGGCSEEEEEECSCBSSC-------CHHHHHTEEEEEEEEEEESC
T ss_pred CCccc-CCCcCCCccEEEECCchHHH-------HHHHHHHhcCCCEEEEEEec
Confidence 77765 4554 789999999887654 27899999999999998754
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=105.08 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=78.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp~ 162 (506)
..+...+... ++.+|||+|||+|.++..+++. .++++|+++..+..+..... ..+.+ +.+...|.... +
T Consensus 83 ~~i~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~-~ 158 (255)
T 3mb5_A 83 ALIVAYAGIS--PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK-WAGFDDRVTIKLKDIYEG-I 158 (255)
T ss_dssp HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH-HHTCTTTEEEECSCGGGC-C
T ss_pred HHHHHhhCCC--CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH-HcCCCCceEEEECchhhc-c
Confidence 3455566443 3459999999999999998876 37889998866655444333 33433 67777777643 6
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++||+|++.. +++..++.++.++|||||++++..+.
T Consensus 159 ~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 159 EEENVDHVILDL------PQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp CCCSEEEEEECS------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCcCEEEECC------CCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 778999999842 34577899999999999999998654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-10 Score=109.79 Aligned_cols=106 Identities=9% Similarity=0.111 Sum_probs=75.0
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-CC-CeEEEEeccccCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-GV-PAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~-~~-~~~~~~~d~~~lp~~ 163 (506)
.+.+.+.. .++.+|||+|||+|.++..+++. .++++|+++..+..+.... ... +. .+.+...|... +++
T Consensus 101 ~~~~~~~~--~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~g~~~v~~~~~d~~~-~~~ 176 (275)
T 1yb2_A 101 YIIMRCGL--RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-SEFYDIGNVRTSRSDIAD-FIS 176 (275)
T ss_dssp -----CCC--CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH-HTTSCCTTEEEECSCTTT-CCC
T ss_pred HHHHHcCC--CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HhcCCCCcEEEEECchhc-cCc
Confidence 34444433 34559999999999999998864 4888999886664444333 222 33 46777777766 667
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++||+|++. .+++..+++++.++|||||++++.++.
T Consensus 177 ~~~fD~Vi~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 177 DQMYDAVIAD------IPDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp SCCEEEEEEC------CSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred CCCccEEEEc------CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999982 235578999999999999999998764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.3e-10 Score=110.32 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=85.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCC-CcccHHHHHhcC---------c-------cce-eccccccCCCC-
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLA-DKNTLGVIYERG---------L-------IGI-YHDWCEAFSTY- 412 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~-~~~~l~~~~~rg---------~-------~~~-~~~~~~~~~~~- 412 (506)
...+|||+|||+|.++..++..+. ..|+++|. ++.|++.|.+.. + +.. ..+|......+
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 345899999999999998888652 37999999 899999887653 1 111 12244332222
Q ss_pred ----CCceeEEEEccccccccCCCCHHHHHHHHhhccc---C--CcEEEEE-eCh-----hhHHHHHHHHhcCC-ceEEE
Q 010599 413 ----PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILR---P--EGAIIIR-DEV-----DEIIKVKKIVGGMR-WDTKM 476 (506)
Q Consensus 413 ----p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLr---P--gG~~ii~-d~~-----~~~~~~~~~~~~~~-w~~~~ 476 (506)
+++||+|.++.++. +..++..+|.++.|+|| | ||.++|. ... .....+.+.+++.+ |++..
T Consensus 157 ~~~~~~~fD~Ii~~dvl~---~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLS---FHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp HHHSCSSBSEEEEESCCS---CGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEE
T ss_pred hhccCCCCCEEEEeCccc---ChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEE
Confidence 47999999988876 34567889999999999 9 9987663 221 12345666778888 88765
Q ss_pred e
Q 010599 477 V 477 (506)
Q Consensus 477 ~ 477 (506)
+
T Consensus 234 ~ 234 (281)
T 3bzb_A 234 W 234 (281)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.3e-10 Score=108.27 Aligned_cols=109 Identities=16% Similarity=0.065 Sum_probs=82.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHH-c--CCCeEEEEeccccCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALE-R--GVPAVIGVLGTIKMP 161 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~-~--~~~~~~~~~d~~~lp 161 (506)
..+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+..+.... . ...+.+...|....+
T Consensus 89 ~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGDIF--PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcCCC--CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 4455555433 3459999999999999998864 4889999887665555444433 1 235778888888888
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++++||+|++.. .++..++.++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 8888999999832 24568899999999999999998764
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-11 Score=112.05 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
.+.+++.+.+.+... .++.+|||+|||+|.++..+++. .++++|+++.++..+..+... .+..+.+.+.|...
T Consensus 14 ~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~- 90 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER-FGAVVDWAAADGIE- 90 (215)
T ss_dssp HHHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-
T ss_pred HHHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH-hCCceEEEEcchHh-
Confidence 455666677666431 34569999999999999999876 489999998777554433322 23345555666655
Q ss_pred CCCC-----CCeeEEEEcCcccccCC------C-------------------hHHHHHHHHHhcCCCeE-EEEEcC
Q 010599 161 PYAS-----RAFDMAHCSRCLIPWGA------N-------------------DGRYMIEVDRVLRPGGY-WVLSGP 205 (506)
Q Consensus 161 p~~~-----~sfDlV~~~~~l~~~~~------~-------------------~~~~l~e~~rvLkPGG~-li~~~p 205 (506)
++++ ++||+|+++..+++... . ...+++++.++|||||+ +++..+
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 5554 89999999765532111 0 05678899999999999 666544
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.2e-10 Score=104.49 Aligned_cols=96 Identities=11% Similarity=-0.025 Sum_probs=73.0
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||+|||+|.++..++.. .++++|+++.++..+... +...+.+ +.+...+...++ +.++||+|++...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQV-QHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 458999999999999998864 489999988766544433 3334443 777777877665 4578999998542
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+...++.++.++|+|||++++...
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3457899999999999999999853
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=106.35 Aligned_cols=118 Identities=11% Similarity=0.105 Sum_probs=80.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc-----C-ccceeccccccCCC--C-CCceeE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----G-LIGIYHDWCEAFST--Y-PRTYDL 418 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r-----g-~~~~~~~~~~~~~~--~-p~s~D~ 418 (506)
+......+|||+|||+|.++.+|+..-....+|+++|.++.+++.|.++ | +...+...+.++.. + +++||+
T Consensus 95 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~ 174 (280)
T 1i9g_A 95 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDR 174 (280)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEE
T ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeE
Confidence 3334456899999999999999987400125899999999999988876 3 11222222223222 2 479999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhc-CCce
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGG-MRWD 473 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~-~~w~ 473 (506)
|++ +..++..+|.++.|+|||||++++.... +.+.++...+.. .+|.
T Consensus 175 v~~--------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 175 AVL--------DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EEE--------ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EEE--------CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 998 3335567999999999999999997754 344444444444 5554
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-10 Score=116.54 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHH--HHH----HHHHcC---CCeEE
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEA--QVQ----FALERG---VPAVI 152 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~--~~~----~a~~~~---~~~~~ 152 (506)
...+..+.+.+... .+.+|||||||+|.++..++.. .++++|+++..+..+ +++ .+...+ .++.+
T Consensus 228 p~~v~~ml~~l~l~--~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 228 PNFLSDVYQQCQLK--KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 34445566666443 4559999999999999999874 389999998766544 222 222334 34566
Q ss_pred EEeccccC--CC--CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 153 GVLGTIKM--PY--ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 153 ~~~d~~~l--p~--~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..++.... ++ ..++||+|+++.++ +.++...+|.++.++|||||.+++..
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred EEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 65544322 22 24689999997665 23455788999999999999999975
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-10 Score=113.52 Aligned_cols=111 Identities=15% Similarity=0.226 Sum_probs=80.3
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP-YA 163 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp-~~ 163 (506)
.+.+.++... .+.+|||||||+|.++..++++ .++++|+ +.++..+.... ...+. .+.+...|....+ +.
T Consensus 169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTI-HAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHH-HHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHH-HhcCCCCceEEEeCCcccCcccC
Confidence 3444443322 2569999999999999999875 4778888 65665444333 33333 3778888877665 23
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+.||+|++..++++|.+.. ..+++++.++|||||+|++..
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 45699999999998875422 789999999999999999965
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-10 Score=106.05 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC---------CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccCC----CC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---------NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMP----YA 163 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---------~v~~vdis~~dl~~~~~~~a~~~-----~~~~~~~~~d~~~lp----~~ 163 (506)
++.+|||||||+|.++..+++. .++++|+++..+..+........ ...+.+...|....+ ..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 3459999999999999988763 48899998876655544443332 235777888877655 55
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
.++||+|++...++++ +.++.++|||||++++..++
T Consensus 160 ~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 160 LGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEcc
Confidence 6789999998877553 48889999999999998754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.2e-10 Score=112.19 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|.++..+++. .++++|+ +.++..+..+. ...+. .+.+...|... +++. .||+|++..+
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYL-KDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 3469999999999999999875 3566777 65665444333 33333 47788777754 4444 4999999999
Q ss_pred ccccCCCh-HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 176 LIPWGAND-GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++|.+.. ..+++++.++|||||++++..+.
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 98875432 58999999999999999997654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=109.60 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=92.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc---CCC--CCCceeEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA---FST--YPRTYDLI 419 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~---~~~--~p~s~D~v 419 (506)
...+|||+|||+|.++..+++.. .+.+|+++|.++.+++.|+++- + ...+...+.+ +.. .+++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 35689999999999999998752 2368999999999999998753 0 0111111222 211 25899999
Q ss_pred EEccccccccCCCCH--HHHHHHHhhcccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeecC---CCCCCCeEE
Q 010599 420 HAHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDHE---DGPLVPEKI 489 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~~ 489 (506)
.++....... ...+ ..++.++.|+|||||.+++.... .....+.+.+++.++........ .-+.....+
T Consensus 174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f 252 (304)
T 3bwc_A 174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGT 252 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEE
T ss_pred EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEE
Confidence 9965543221 1111 57999999999999999996543 24566777788888864433222 112245678
Q ss_pred EEEEec
Q 010599 490 LVAVKQ 495 (506)
Q Consensus 490 l~~~k~ 495 (506)
++|.|.
T Consensus 253 ~~as~~ 258 (304)
T 3bwc_A 253 LVCSKK 258 (304)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 888885
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-10 Score=114.99 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=66.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc----c-eeccc--cccCCCCC-CceeEEEEcc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----G-IYHDW--CEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~----~-~~~~~--~~~~~~~p-~s~D~v~~~~ 423 (506)
+..+|||+|||+|+++..|++. ..|+++|.++ |+..+.++... + .+... +.++..+| ++||+|.|+.
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 3568999999999999999886 3699999996 75444333221 0 11222 23443344 8999999976
Q ss_pred ccccccCCC-CH---HHHHHHHhhcccCCc--EEEEEeC
Q 010599 424 LFSLYKDKC-NI---EDILLEMDRILRPEG--AIIIRDE 456 (506)
Q Consensus 424 ~~~~~~~~~-~~---~~~l~e~~RvLrPgG--~~ii~d~ 456 (506)
+ ....+.. +. ..+|.++.|+||||| .|++...
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 6 3222111 11 137999999999999 9999653
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-10 Score=109.27 Aligned_cols=118 Identities=16% Similarity=0.059 Sum_probs=78.3
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHc--CC--C------
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALER--GV--P------ 149 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~dl~~~~~~~a~~~--~~--~------ 149 (506)
..+++.+.+.+.. ..+.+|||+|||+|.++..++.. .++++|+++.++..+........ ++ .
T Consensus 37 ~~l~~~~l~~~~~--~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~ 114 (250)
T 1o9g_A 37 TEIFQRALARLPG--DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE 114 (250)
T ss_dssp HHHHHHHHHTSSC--CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhh
Confidence 3555555555532 23458999999999999988764 48899998877655543322110 11 0
Q ss_pred -------------------eE-------------EEEeccccCCC-----CCCCeeEEEEcCcccccCCC--------hH
Q 010599 150 -------------------AV-------------IGVLGTIKMPY-----ASRAFDMAHCSRCLIPWGAN--------DG 184 (506)
Q Consensus 150 -------------------~~-------------~~~~d~~~lp~-----~~~sfDlV~~~~~l~~~~~~--------~~ 184 (506)
+. +...|...... ..++||+|+|+..+++.... ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~ 194 (250)
T 1o9g_A 115 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVA 194 (250)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred hhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHH
Confidence 22 66677654321 34589999998766543321 14
Q ss_pred HHHHHHHHhcCCCeEEEEEcC
Q 010599 185 RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 185 ~~l~e~~rvLkPGG~li~~~p 205 (506)
.+++++.++|||||+++++..
T Consensus 195 ~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 195 GLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHhcCCCcEEEEeCc
Confidence 899999999999999999543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=103.23 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=70.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCCC----CceeEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STYP----RTYDLIH 420 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~p----~s~D~v~ 420 (506)
..+|||+|||+|.++..|++.-.....|+++|.++.+++.|.++ |+...+...+.++ +.++ .+||+|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 46899999999999999988621125899999999999988765 3322122222221 1121 5799999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
++.... ....+|.++.|+|||||.+++.+.
T Consensus 139 ~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 139 IDADKQ------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp ECSCGG------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EcCCcH------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 854422 456799999999999999998654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.6e-10 Score=111.09 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=71.3
Q ss_pred CceEEeecCcccH----HHHHHHhC-CC-e-EEEEeecCCCcccHHHHHhcCc------------------------cc-
Q 010599 353 YRNIMDMNAGFGG----FAAAIQSS-KL-W-VMNVVPTLADKNTLGVIYERGL------------------------IG- 400 (506)
Q Consensus 353 ~~~vLD~gcG~G~----~~~~l~~~-~~-~-~~~v~~~d~~~~~l~~~~~rg~------------------------~~- 400 (506)
..+|||+|||||. +|..|++. +. . ...|+++|+|++||+.|++.-. .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3579999999998 55555542 21 0 1489999999999999987420 00
Q ss_pred -------------eeccccccCCCC--CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 401 -------------IYHDWCEAFSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 401 -------------~~~~~~~~~~~~--p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
..+++.+ .+ + ++.||+|.|.+++.+.. ......++.+++++|||||+|++...
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~-~~-~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLE-KQ-YNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEECHHHHTTEEEEECCTTC-SS-CCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred eeechhhcccCeEEecccCC-CC-CCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 1122222 11 3 37899999999987554 23447899999999999999999544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=102.74 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEE-eccc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGV-LGTI 158 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~-~d~~ 158 (506)
++...+. .+.+.+.. ...+.+|||||||+|.++..|++. .|+++|+++.++..+ .++........ .+..
T Consensus 20 rg~~kL~-~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a-----~~~~~~~~~~~~~~~~ 92 (232)
T 3opn_A 20 RGGLKLE-KALKEFHL-EINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWK-----IRSDERVVVMEQFNFR 92 (232)
T ss_dssp TTHHHHH-HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHH-----HHTCTTEEEECSCCGG
T ss_pred CcHHHHH-HHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHH-----HHhCccccccccceEE
Confidence 4444443 34444432 234569999999999999999887 389999999888643 23222222211 1111
Q ss_pred cCC---CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCcccchhc-----ccCChHHhHHHHHHH
Q 010599 159 KMP---YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKA-----WQRPKEELQEEQRKI 230 (506)
Q Consensus 159 ~lp---~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~l 230 (506)
.+. ++...||.+.+..++.++ ..++.++.|+|||||+|++...+. +...... ..+.........+.+
T Consensus 93 ~~~~~~~~~~~~d~~~~D~v~~~l----~~~l~~i~rvLkpgG~lv~~~~p~-~e~~~~~~~~~G~~~d~~~~~~~~~~l 167 (232)
T 3opn_A 93 NAVLADFEQGRPSFTSIDVSFISL----DLILPPLYEILEKNGEVAALIKPQ-FEAGREQVGKNGIIRDPKVHQMTIEKV 167 (232)
T ss_dssp GCCGGGCCSCCCSEEEECCSSSCG----GGTHHHHHHHSCTTCEEEEEECHH-HHSCHHHHC-CCCCCCHHHHHHHHHHH
T ss_pred EeCHhHcCcCCCCEEEEEEEhhhH----HHHHHHHHHhccCCCEEEEEECcc-cccCHHHhCcCCeecCcchhHHHHHHH
Confidence 111 111124555544444332 678999999999999999975221 1111111 111223333345556
Q ss_pred HHHHHhcceee
Q 010599 231 EEIANLLCWEK 241 (506)
Q Consensus 231 ~~l~~~~~w~~ 241 (506)
.++.+..+|+.
T Consensus 168 ~~~l~~aGf~v 178 (232)
T 3opn_A 168 LKTATQLGFSV 178 (232)
T ss_dssp HHHHHHHTEEE
T ss_pred HHHHHHCCCEE
Confidence 66666666654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-10 Score=108.38 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=74.5
Q ss_pred CCceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc-------Cccce----------------------
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER-------GLIGI---------------------- 401 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r-------g~~~~---------------------- 401 (506)
...+|||+|||+|.++..|+..- ....+|+++|.++.|++.|.++ ++...
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 45689999999999999887740 1246899999999999988854 11000
Q ss_pred ---ec-------------cccccCCC-C------C-CceeEEEEccccccccCC------CCHHHHHHHHhhcccCCcEE
Q 010599 402 ---YH-------------DWCEAFST-Y------P-RTYDLIHAHGLFSLYKDK------CNIEDILLEMDRILRPEGAI 451 (506)
Q Consensus 402 ---~~-------------~~~~~~~~-~------p-~s~D~v~~~~~~~~~~~~------~~~~~~l~e~~RvLrPgG~~ 451 (506)
+. ..+.++.. . + .+||+|+|+..+....+. .....++.++.|+|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 11 22233222 2 3 489999998766643322 23458999999999999999
Q ss_pred EEEeCh
Q 010599 452 IIRDEV 457 (506)
Q Consensus 452 ii~d~~ 457 (506)
+|.+..
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 997654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=104.25 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=68.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCC----C---CCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFST----Y---PRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~----~---p~s~D~v~~~~ 423 (506)
..+|||+|||+|.++..+++.+. +|+++|.++.|++.|.++-- .+ .+...+.++.. . +.+||+|+++.
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 45799999999999999998763 49999999999998887521 00 12222222221 2 13899999987
Q ss_pred ccccccCCCCHHHHHHHHh--hcccCCcEEEEEeCh
Q 010599 424 LFSLYKDKCNIEDILLEMD--RILRPEGAIIIRDEV 457 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~--RvLrPgG~~ii~d~~ 457 (506)
.|. . ..+.++.++. |+|||||.+++....
T Consensus 119 ~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA--M---DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCc--h---hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 765 2 3345666666 999999999997654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.7e-10 Score=105.31 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC---eEEE
Q 010599 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP---AVIG 153 (506)
Q Consensus 82 ~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~---~~~~ 153 (506)
......++..+....+. .++.+|||||||+|..+..|++. .++++|+++.++..+...+ ...+.. +.+.
T Consensus 38 ~~~~~~~l~~l~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~~i~~~ 114 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNG--NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF-REAGYSPSRVRFL 114 (221)
T ss_dssp CHHHHHHHHHHHHHSCC--TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH-HHTTCCGGGEEEE
T ss_pred CHHHHHHHHHHHHhhCC--CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcCcEEEE
Confidence 35556676777766532 22348999999999999998863 4899999987665554433 333443 6777
Q ss_pred EeccccC-C-CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 154 VLGTIKM-P-YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 154 ~~d~~~l-p-~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..|+... + +++++||+|++... ..+...+++++.++|||||++++..
T Consensus 115 ~gda~~~l~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 115 LSRPLDVMSRLANDSYQLVFGQVS----PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CSCHHHHGGGSCTTCEEEEEECCC----TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred EcCHHHHHHHhcCCCcCeEEEcCc----HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 7776443 2 34689999998643 2334679999999999999999853
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=111.90 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=101.8
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceeccccccCCCCC-CceeEE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEAFSTYP-RTYDLI 419 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~~~~~~~p-~s~D~v 419 (506)
++........++|+|||||+|.++..|+++. ..+.++..|. +.+++.|.++- ....+.....+|-..| ..+|++
T Consensus 171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~ 248 (353)
T 4a6d_A 171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLY 248 (353)
T ss_dssp HHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEE
T ss_pred HHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEE
Confidence 3444556677899999999999999998752 2356777887 48999887752 1122222234443323 568999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--------------------------hhHHHHHHHHhcCCce
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------------------DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------------------~~~~~~~~~~~~~~w~ 473 (506)
++.++|+.+.+ .+...+|+++.++|+|||+++|.|.. ...+++++++++.+|+
T Consensus 249 ~~~~vlh~~~d-~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~ 327 (353)
T 4a6d_A 249 ILARVLHDWAD-GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFR 327 (353)
T ss_dssp EEESSGGGSCH-HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCE
T ss_pred EeeeecccCCH-HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 99999985431 13457899999999999999997642 0246788999999999
Q ss_pred EEEeecCCCCCCCeEEEEEEec
Q 010599 474 TKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
...+....+ ..-+++|+|-
T Consensus 328 ~v~v~~~~~---~~~~i~ArKg 346 (353)
T 4a6d_A 328 DFQFKKTGA---IYDAILARKG 346 (353)
T ss_dssp EEEEECCSS---SCEEEEEECC
T ss_pred eEEEEEcCC---ceEEEEEEec
Confidence 665433322 4568899984
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=112.05 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=92.7
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-CCCCCceeEEEEccccccc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-STYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-~~~p~s~D~v~~~~~~~~~ 428 (506)
..+..+|||||||+|.++..|++.. ....++.+|. +.|++.|.++.-+... +.++ ..+|.. |+|++.++++++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~---~~d~~~~~p~~-D~v~~~~vlh~~ 274 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAFSGVEHL---GGDMFDGVPKG-DAIFIKWICHDW 274 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCCTTEEEE---ECCTTTCCCCC-SEEEEESCGGGB
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhcCCCEEE---ecCCCCCCCCC-CEEEEechhhcC
Confidence 4557899999999999999998742 1257899999 6898877665322221 2222 234544 999999999855
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCceEEEee
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w~~~~~~ 478 (506)
.. .+...+|+++.|+|||||+|+|.|..- ..+++++++++.+++...+.
T Consensus 275 ~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 353 (368)
T 3reo_A 275 SD-EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVA 353 (368)
T ss_dssp CH-HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence 42 234579999999999999999965320 14567888999999865443
Q ss_pred cCCCCCCCeEEEEEEec
Q 010599 479 HEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 479 ~~~~~~~~~~~l~~~k~ 495 (506)
...+ ...++.+.|+
T Consensus 354 ~~~~---~~~vie~~k~ 367 (368)
T 3reo_A 354 SCAF---NTYVMEFLKT 367 (368)
T ss_dssp EEET---TEEEEEEECC
T ss_pred EeCC---CcEEEEEEeC
Confidence 3322 2335555553
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=105.78 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHc-------C-CCeEEEEecccc-CC--CCCCC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALER-------G-VPAVIGVLGTIK-MP--YASRA 166 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~-------~-~~~~~~~~d~~~-lp--~~~~s 166 (506)
.+.+|||||||+|.++..++.. .++++|+++.++..+..+....+ + .++.+...|+.. ++ ++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 3458999999999999999875 48999999877655544433320 3 357778888765 56 77889
Q ss_pred eeEEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 167 FDMAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+|.|+....- +|... ...++.++.++|+|||+|++.+..
T Consensus 129 ~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 129 LSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp EEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 9999864321 21110 047999999999999999997543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-11 Score=117.37 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=72.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++..|++.+ ..|+++|.++.|++.|.++ |+...+...+.++..+ +++||+|+++..++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 4679999999999999999876 6899999999999988765 3211222223333222 38999999998888
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.. .....+.++.|+|||||.+++..
T Consensus 156 ~~~---~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 156 GPD---YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SGG---GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred Ccc---hhhhHHHHHHhhcCCcceeHHHH
Confidence 544 33337789999999999987753
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.2e-10 Score=102.51 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=76.1
Q ss_pred CceEEeecCcccHHHHHHHhCCCe--------EEEEeecCCCcccHHHHHhcCccceeccc-cccCCC----------CC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLW--------VMNVVPTLADKNTLGVIYERGLIGIYHDW-CEAFST----------YP 413 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~--------~~~v~~~d~~~~~l~~~~~rg~~~~~~~~-~~~~~~----------~p 413 (506)
..+|||+|||+|.++..|++.-.. ...|+++|.++.+ .. + . +... ..++.. ++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-~~--~-~----~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-PL--E-G----ATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-CC--T-T----CEEECSCCTTSHHHHHHHHHHSG
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-cC--C-C----CeEEEeccCCCHHHHHHHHHhcC
Confidence 468999999999999999875211 0479999999632 10 0 1 1111 122211 23
Q ss_pred -CceeEEEEccccccccCCC-CH-------HHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCce-EEEeecC-C
Q 010599 414 -RTYDLIHAHGLFSLYKDKC-NI-------EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWD-TKMVDHE-D 481 (506)
Q Consensus 414 -~s~D~v~~~~~~~~~~~~~-~~-------~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~-~~~~~~~-~ 481 (506)
++||+|.|+..++...++. +. ..+|.++.|+|||||.+++.+... ....+...+... |. +...... .
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~~~ 173 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRIIKPEAS 173 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEECCC--
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEECCccc
Confidence 6899999976655333221 11 478999999999999999986432 234444444432 33 2222211 1
Q ss_pred CCCCCeEEEEEEe
Q 010599 482 GPLVPEKILVAVK 494 (506)
Q Consensus 482 ~~~~~~~~l~~~k 494 (506)
.....|.+++++.
T Consensus 174 ~~~~~e~~~v~~g 186 (196)
T 2nyu_A 174 RKESSEVYFLATQ 186 (196)
T ss_dssp ------EEEEEEE
T ss_pred CccCceEEEEeee
Confidence 1123566666654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-11 Score=115.85 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=76.6
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+.+|||+|||+|.++..+++.+ ++++|+++.++..+..+ +...++ .+.+.+.|...++ ++++||+|+++..+++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNN-AEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG 156 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence 4589999999999999999874 88999998776554433 334454 5788888887776 5679999999988766
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 179 WGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
. .+....+.++.++|+|||++++.
T Consensus 157 ~-~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 P-DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp G-GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred c-chhhhHHHHHHhhcCCcceeHHH
Confidence 3 44455778899999999997765
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=104.04 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-C-CceeEEEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-P-RTYDLIHA 421 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p-~s~D~v~~ 421 (506)
......+|||+|||+|.++..+++. ..+|+++|.++++++.|.++ ++.........++.. . + ++||+|++
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 164 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV 164 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEE
Confidence 3344568999999999999999876 35899999999999998876 321222222333322 2 3 78999998
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCce
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~ 473 (506)
+..++..+|.++.++|||||.+++.... ....++...++.. |.
T Consensus 165 --------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 165 --------DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp --------CSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred --------CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 3446667999999999999999998874 4556666666655 55
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=100.58 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC---------------
Q 010599 103 VRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------------- 161 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--------------- 161 (506)
+.+|||+|||+|.++..++++ .++++|+++.. ....+.+.+.|+...+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccc
Confidence 458999999999999999864 38999998831 1123567777877665
Q ss_pred ----------CCCCCeeEEEEcCcccccC---CCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010599 162 ----------YASRAFDMAHCSRCLIPWG---AND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ----------~~~~sfDlV~~~~~l~~~~---~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++++||+|+|..++++.. .+. ..+++++.++|||||.|++..
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 5677999999987653311 111 137899999999999999865
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-10 Score=103.35 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-------CCCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-------YPRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-------~p~s~D~v~ 420 (506)
...+|||+|||+|.++..++..+. .+|+++|.++.|++.|.++ ++...+...+.++.. .+.+||+|.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 356899999999999998877642 5899999999999988765 221111111222211 157999999
Q ss_pred EccccccccCCCCHHHHHHHH--hhcccCCcEEEEEeCh
Q 010599 421 AHGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~ 457 (506)
++..|. ......++.++ .|+|||||.+++....
T Consensus 122 ~~~~~~----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYA----KQEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp ECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ECCCCC----chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 977754 23556777777 9999999999997544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=105.20 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=88.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC------------
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY------------ 412 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~------------ 412 (506)
..+|||+|||+|.++..|++......+|+++|.++.+++.|.++ |+...+...+.+ ++.+
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 45899999999999999987521125899999999999988876 331111111111 1111
Q ss_pred ---C-CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh------------hhHHH----HHHHHhcCCc
Q 010599 413 ---P-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIK----VKKIVGGMRW 472 (506)
Q Consensus 413 ---p-~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~~~~~----~~~~~~~~~w 472 (506)
+ ++||+|+++... .....+|.++.++|||||.+++.+.. ..... .+.+...-++
T Consensus 141 f~~~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADK------ENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLV 214 (239)
T ss_dssp TCCSTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTE
T ss_pred ccCCCCCcCEEEEeCCH------HHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCe
Confidence 2 789999985432 24568999999999999999997621 11222 3334566778
Q ss_pred eEEEeecCCCCCCCeEEEEEEecc
Q 010599 473 DTKMVDHEDGPLVPEKILVAVKQY 496 (506)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~k~~ 496 (506)
.+......+| +.+++|++
T Consensus 215 ~~~~~p~~~g------~~~~~~~~ 232 (239)
T 2hnk_A 215 DVSLVPIADG------VSLVRKRL 232 (239)
T ss_dssp EEEEECSTTC------EEEEEECC
T ss_pred EEEEEEcCCc------eEeeeehh
Confidence 8777655543 67777765
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-10 Score=103.55 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=71.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p~s~D~v~~~~~ 424 (506)
..+|||+|||+|.++..++.++. ..|+++|.++.|++.|.++ ++ ..+...+.+ ++..+++||+|.++..
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 35799999999999998777653 3899999999999988765 22 112222222 3333479999999766
Q ss_pred cccccCCCCHHHHHHHHhh--cccCCcEEEEEeCh
Q 010599 425 FSLYKDKCNIEDILLEMDR--ILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~R--vLrPgG~~ii~d~~ 457 (506)
|. ......++.++.+ +|||||.+++....
T Consensus 132 ~~----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FR----RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SS----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CC----CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 54 3456778888854 69999999997654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.9e-10 Score=107.13 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=77.1
Q ss_pred HHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH---cCCC--eEEEEeccccC--
Q 010599 92 LASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE---RGVP--AVIGVLGTIKM-- 160 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~---~~~~--~~~~~~d~~~l-- 160 (506)
+..++... .+.+|||+|||+|.++..|+++ .++++|+++.++..+..+.. . .+.. +.+...|....
T Consensus 28 L~~~~~~~--~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~-~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVADD--RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLE-LPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCCC--SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTT-SGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhccc--CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-hhhhCCCcceEEEEeCCHHHHhh
Confidence 44555433 3458999999999999999876 47888887755543333222 2 2332 67777887765
Q ss_pred -----CCCCCCeeEEEEcCccccc-----------------CCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 161 -----PYASRAFDMAHCSRCLIPW-----------------GANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 161 -----p~~~~sfDlV~~~~~l~~~-----------------~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++++++||+|+++..+... ......+++++.++|||||+|++..+.
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 3667899999998544221 112468899999999999999998653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-10 Score=115.61 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=64.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCC----CcccHHHHHhcCc-cceeccccc-cCCCCC-CceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLA----DKNTLGVIYERGL-IGIYHDWCE-AFSTYP-RTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~----~~~~l~~~~~rg~-~~~~~~~~~-~~~~~p-~s~D~v~~~~~~ 425 (506)
..+|||+|||+|+++..|++.+ .|+++|. ++.++..+..+.. ...+...+. ++..+| .+||+|+|+..+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~~ 158 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGE 158 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECCcc
Confidence 4689999999999999999862 5778887 4444432211111 111222233 444444 899999998777
Q ss_pred ccccCCC-C---HHHHHHHHhhcccCCcEEEEEeC
Q 010599 426 SLYKDKC-N---IEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~-~---~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+ ..+.. + ...+|.++.|+|||||.|++...
T Consensus 159 ~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 159 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred c-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 5 22211 1 11589999999999999999643
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.4e-10 Score=105.78 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=72.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CCC--CCceeEEEEc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----STY--PRTYDLIHAH 422 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~~--p~s~D~v~~~ 422 (506)
..+|||+|||+|.++..|++.. ...+|+++|.++.+++.|.++ |+...+...+.++ +.. +++||+|+++
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 4589999999999999998752 125899999999999998876 4311122222222 223 5789999996
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
..++ +...+|.++.++|||||.+++.+.
T Consensus 134 ~~~~------~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 134 AAKG------QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GGGS------CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCHH------HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 5543 667899999999999999999753
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-10 Score=111.24 Aligned_cols=101 Identities=13% Similarity=0.018 Sum_probs=68.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--------------cceeccccccCCC---
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--------------IGIYHDWCEAFST--- 411 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--------------~~~~~~~~~~~~~--- 411 (506)
......+|||+|||+|.++..|+........|+++|.++.+++.|.++.. ...+...+.++..
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 33445689999999999999988741112579999999999999887521 1122222233322
Q ss_pred -CC-CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 412 -YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 412 -~p-~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++ ++||+|+++. .....+|.++.|+|||||.|++....
T Consensus 182 ~~~~~~fD~V~~~~--------~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 182 DIKSLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ------EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ccCCCCeeEEEECC--------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 33 6899999832 23334899999999999999997654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-09 Score=108.64 Aligned_cols=118 Identities=15% Similarity=-0.003 Sum_probs=85.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh-----CCcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS-----RNVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK 159 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----~~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~ 159 (506)
+.+...+..+.... ++.+|||+|||+|.++..++. ..++++|+++.++..+..+ +...++ .+.+.+.|+..
T Consensus 189 ~~la~~l~~~~~~~--~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n-~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 189 PVLAQALLRLADAR--PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREA-ALASGLSWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHHHHTTCC--TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHH-HHHTTCTTCEEEECCGGG
T ss_pred HHHHHHHHHHhCCC--CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHH-HHHcCCCceEEEeCChhh
Confidence 33445556665433 345899999999999888876 3589999999777555443 444454 57888999999
Q ss_pred CCCCCCCeeEEEEcCcccccCCC-------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 160 MPYASRAFDMAHCSRCLIPWGAN-------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~-------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++.+.++||+|+++..+.....+ ...+++++.++|||||.+++.++.
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 88777789999997654221111 157899999999999999998763
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-10 Score=115.28 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=72.8
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHH-HHH--HcCCCeEEEEeccccCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQ-FAL--ERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~dl~~~~~~-~a~--~~~~~~~~~~~d~~~lp~~ 163 (506)
.+.+.++.. .+.+|||||||+|.++..++++ + ++++|+++ ...+ ... .....+.+...|.. .+++
T Consensus 175 ~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-----~~~~~~~~~~~~~~~v~~~~~d~~-~~~p 246 (348)
T 3lst_A 175 ILARAGDFP--ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-----VVARHRLDAPDVAGRWKVVEGDFL-REVP 246 (348)
T ss_dssp HHHHHSCCC--SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-----HHTTCCCCCGGGTTSEEEEECCTT-TCCC
T ss_pred HHHHhCCcc--CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-----HhhcccccccCCCCCeEEEecCCC-CCCC
Confidence 445555433 3559999999999999999875 3 45555521 1110 000 11224778888875 4555
Q ss_pred CCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 164 SRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+||+|++..++++|.+.. ..+|+++.++|||||+|++..
T Consensus 247 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 247 --HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred --CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 899999999998875433 699999999999999999965
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.1e-10 Score=111.82 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=73.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC---CCCceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST---YPRTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~---~p~s~D~v 419 (506)
.+...+..+|||+|||+|.++..|++......+|+++|.+++|++.|.++ |+.. +...+.++.. .+++||+|
T Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~~~fD~I 148 (317)
T 1dl5_A 70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFSPYDVI 148 (317)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCCEEEE
T ss_pred hcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccCCCeEEE
Confidence 33444567899999999999999987532124699999999999998876 3321 2222333322 23899999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
++..++++.. .++.++|||||.+++....
T Consensus 149 v~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 149 FVTVGVDEVP---------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EECSBBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred EEcCCHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence 9998887544 5789999999999997543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-09 Score=99.95 Aligned_cols=113 Identities=13% Similarity=0.186 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEe
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~ 155 (506)
.....++..+.... ++.+|||||||+|.++..|++. .++++|+++.++..+..... ..+.. +.+.+.
T Consensus 50 ~~~~~~l~~l~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~ 123 (225)
T 3tr6_A 50 PEQAQLLALLVKLM-----QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWE-KAGLSDKIGLRLS 123 (225)
T ss_dssp HHHHHHHHHHHHHH-----TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEES
T ss_pred HHHHHHHHHHHHhh-----CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeC
Confidence 33345555554443 2348999999999999999875 38899998876655544333 33433 777777
Q ss_pred cccc-CC-CC----CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 156 GTIK-MP-YA----SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 156 d~~~-lp-~~----~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+... ++ +. .++||+|++... ..+...+++++.++|||||+|++...
T Consensus 124 d~~~~~~~~~~~~~~~~fD~v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 124 PAKDTLAELIHAGQAWQYDLIYIDAD----KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp CHHHHHHHHHTTTCTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CHHHHHHHhhhccCCCCccEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 7633 22 11 178999997543 23357899999999999999998653
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-09 Score=98.63 Aligned_cols=116 Identities=11% Similarity=-0.038 Sum_probs=80.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~ 431 (506)
...+|||+|||+|.++..|+..+ ...|+++|.++.|++.|.++.. .+...+.++..+|++||+|.++..|.+..+.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG--GVNFMVADVSEISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCCCCEEEEEECCCC------
T ss_pred CCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcC--CCEEEECcHHHCCCCeeEEEECCCchhccCc
Confidence 35689999999999999998874 2479999999999999988742 1122234444456899999999988866532
Q ss_pred CCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010599 432 CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
. ...++.++.|+| |+.+++. .......+.+++...+ ++..
T Consensus 127 ~-~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g-~~~~ 166 (200)
T 1ne2_A 127 S-DRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG-DVFR 166 (200)
T ss_dssp --CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE-EEEE
T ss_pred h-hHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC-CEEE
Confidence 2 256899999999 5544444 4455677777777766 5543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.1e-10 Score=112.09 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=85.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-CCCCCceeEEEEccccccccC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-STYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-~~~p~s~D~v~~~~~~~~~~~ 430 (506)
+..+|||+|||+|.++..|++.. ....++++|. +.|++.|.+..- +...+.++ ..+|. ||+|++.++|+++.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~---v~~~~~d~~~~~p~-~D~v~~~~~lh~~~- 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGSNN---LTYVGGDMFTSIPN-ADAVLLKYILHNWT- 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCBTT---EEEEECCTTTCCCC-CSEEEEESCGGGSC-
T ss_pred cCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccCCC---cEEEeccccCCCCC-ccEEEeehhhccCC-
Confidence 45789999999999999998642 1247999999 799988765421 22222333 23444 99999999998554
Q ss_pred CCCHH--HHHHHHhhcccC---CcEEEEEeChh----------------------------hHHHHHHHHhcCCceEEEe
Q 010599 431 KCNIE--DILLEMDRILRP---EGAIIIRDEVD----------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 431 ~~~~~--~~l~e~~RvLrP---gG~~ii~d~~~----------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
+.. .+|+++.|+||| ||+++|.|... ..+++++++++.+++...+
T Consensus 261 --d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 338 (352)
T 1fp2_A 261 --DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 338 (352)
T ss_dssp --HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred --HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEE
Confidence 444 899999999999 99999976320 1356778888888885543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-09 Score=103.58 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=72.5
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-CCCC--CCCeeEEEE
Q 010599 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK-MPYA--SRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~-lp~~--~~sfDlV~~ 172 (506)
+.+|||||||+|..+..|++. .++++|+++.++..+..... ..+. .+.+...|+.. ++.. .++||+|++
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQ-LAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 458999999999999999875 48899998876655444333 3343 37778888754 3332 348999998
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
... ..+...+++++.++|||||+|++...
T Consensus 143 d~~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 143 DAD----KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CSC----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCc----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 653 23346899999999999999998653
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.2e-10 Score=105.32 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=73.6
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-CCCCCeeEEEEcC
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-P-YASRAFDMAHCSR 174 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l-p-~~~~sfDlV~~~~ 174 (506)
+.+|||||||+|.++..|++. .++++|+++.++..+.... ...+. .+.+...|+... + ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNL-ATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 458999999999999999883 4899999987765554433 33443 477888887553 4 3368999999864
Q ss_pred cccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 175 CLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. ......+++++.++|||||+|++..
T Consensus 151 ~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 151 A----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp T----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred c----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 3 3345789999999999999998853
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=111.15 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
...+|||||||+|.++..|+++ + ++++|+ + .+++.+.+. ..+.+...|... |++.+ |+|++..++|
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P-----HVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICH 272 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H-----HHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence 3469999999999999999875 3 555665 3 333444332 457888888765 77654 9999999998
Q ss_pred ccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 178 PWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 178 ~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|.++. ..+|+++.++|||||+|++..
T Consensus 273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 886543 588999999999999999965
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=104.69 Aligned_cols=97 Identities=10% Similarity=0.004 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...++ ++.+...|+..++. .++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~-n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE-NIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH-HHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 3459999999999999999875 48999999877655443 3444444 46778888877744 6789999997643
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 177 IPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
....++.++.+.|||||.++++..
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 456789999999999999999764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.3e-10 Score=103.81 Aligned_cols=99 Identities=15% Similarity=0.001 Sum_probs=71.4
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CC--CCceeEEEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TY--PRTYDLIHA 421 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~--p~s~D~v~~ 421 (506)
......+|||+|||+|.++..|++......+|+++|.++++++.+.++ |+.. +...+.++. .+ +++||+|++
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~ 152 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLGYEPLAPYDRIYT 152 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCCCCCeeEEEE
Confidence 344456899999999999999987431114799999999999999876 2211 111122221 12 378999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+.++++.. .++.|+|||||.+++....
T Consensus 153 ~~~~~~~~---------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 153 TAAGPKIP---------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred CCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence 88887544 4899999999999998654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=102.29 Aligned_cols=130 Identities=16% Similarity=0.061 Sum_probs=86.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCC-----CceeEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYP-----RTYDLI 419 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p-----~s~D~v 419 (506)
..+|||+|||+|.++..|++.-....+|+++|.++.+++.|.++ |+...+...+.+ ++.++ ++||+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 46899999999999999987411125899999999999988875 331111111121 11121 689999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh------------hhHHHHHH----HHhcCCceEEEeecCCCC
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKK----IVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~~~~~~~~----~~~~~~w~~~~~~~~~~~ 483 (506)
+++.. ......++.++.|+|||||.+++.+.. +....+++ +...-++++.+....+
T Consensus 150 ~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d-- 221 (229)
T 2avd_A 150 VVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGD-- 221 (229)
T ss_dssp EECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTT--
T ss_pred EECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCC--
Confidence 99432 345678999999999999999996532 12223333 3556678877765543
Q ss_pred CCCeEEEEEEe
Q 010599 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
.+++++|
T Consensus 222 ----Gl~~~~k 228 (229)
T 2avd_A 222 ----GLTLAFK 228 (229)
T ss_dssp ----CEEEEEE
T ss_pred ----ceEEEEE
Confidence 3666666
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-09 Score=102.83 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=85.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC---C--CceeEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY---P--RTYDLI 419 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~---p--~s~D~v 419 (506)
.++|||+|||+|.++..|+..-.....|+++|.++.+++.|.++ |+...+...+.+ ++.+ + ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 45899999999999999987411125899999999999988765 332111111122 2222 2 789999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------hHHHHHHH----HhcCCceEEEeecCCCC
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKKI----VGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~~----~~~~~w~~~~~~~~~~~ 483 (506)
+++.. ..+...++.++.|+|||||++++.+..- ....++++ ...-++.+.+....|
T Consensus 153 ~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d-- 224 (232)
T 3cbg_A 153 FIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGD-- 224 (232)
T ss_dssp EECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBT--
T ss_pred EECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCC--
Confidence 98543 2356779999999999999999965321 22333333 445677766655443
Q ss_pred CCCeEEEEEEe
Q 010599 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
.+.+++|
T Consensus 225 ----G~~~~~~ 231 (232)
T 3cbg_A 225 ----GMTLALK 231 (232)
T ss_dssp ----CEEEEEE
T ss_pred ----eEEEEEe
Confidence 2556665
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=111.78 Aligned_cols=103 Identities=13% Similarity=0.144 Sum_probs=74.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--Cc--EEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NV--IAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASR 165 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v--~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~ 165 (506)
..+.+.++. .....+|||||||+|.++..++++ ++ +++|+ + .+++.+.+. ..+.+...|... +++.
T Consensus 198 ~~l~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~~~- 267 (372)
T 1fp1_D 198 KRMLEIYTG-FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-P-----QVIENAPPL-SGIEHVGGDMFA-SVPQ- 267 (372)
T ss_dssp HHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCC-
T ss_pred HHHHHHhhc-cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-H-----HHHHhhhhc-CCCEEEeCCccc-CCCC-
Confidence 344444431 123469999999999999999876 34 44465 3 344444332 347778888766 6664
Q ss_pred CeeEEEEcCcccccCCChH--HHHHHHHHhcCCCeEEEEEc
Q 010599 166 AFDMAHCSRCLIPWGANDG--RYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 166 sfDlV~~~~~l~~~~~~~~--~~l~e~~rvLkPGG~li~~~ 204 (506)
||+|++..+++||.+ +. .+|+++.++|||||+|++..
T Consensus 268 -~D~v~~~~~lh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 268 -GDAMILKAVCHNWSD-EKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp -EEEEEEESSGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCEEEEecccccCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999999988754 44 99999999999999999974
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=102.36 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-CCCC-----CCCeeE
Q 010599 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK-MPYA-----SRAFDM 169 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~-lp~~-----~~sfDl 169 (506)
+.+|||||||+|..+..+++. .++++|+++.++..+..... ..+. .+.+...|+.. ++.. .++||+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN-FAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH-HcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 458999999999999999873 48999999877655544433 3343 36777777643 3322 278999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++.....++ .+...++.++ ++|||||+|++..
T Consensus 138 V~~d~~~~~~-~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 138 VFLDHWKDRY-LPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp EEECSCGGGH-HHHHHHHHHT-TCCCTTCEEEESC
T ss_pred EEEcCCcccc-hHHHHHHHhc-cccCCCeEEEEeC
Confidence 9998765443 2224566777 9999999999864
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=114.70 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=81.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
+.+.+.+.+.+.. .++.+|||||||+|.++..+++. .|+++|+++ ++.. +.+.+...++ .+.+...|...+
T Consensus 144 ~~~~~~il~~l~~--~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~-A~~~~~~~gl~~~v~~~~~d~~~~ 219 (480)
T 3b3j_A 144 GTYQRAILQNHTD--FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQH-AEVLVKSNNLTDRIVVIPGKVEEV 219 (480)
T ss_dssp HHHHHHHHHTGGG--TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHH-HHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHHhhhh--cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHH-HHHHHHHcCCCCcEEEEECchhhC
Confidence 4455566665532 23459999999999999999876 478999976 5533 3344444454 478888888887
Q ss_pred CCCCCCeeEEEEcCcccccCCC-hHHHHHHHHHhcCCCeEEEEE
Q 010599 161 PYASRAFDMAHCSRCLIPWGAN-DGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~-~~~~l~e~~rvLkPGG~li~~ 203 (506)
+++ ++||+|+|+.+++++..+ ....+.++.++|||||++++.
T Consensus 220 ~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 220 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred ccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 765 589999998776665432 256777899999999999864
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-09 Score=104.36 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEec-CccchHHHHHHHH----HHcCC------
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSF-APRDSHEAQVQFA----LERGV------ 148 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdi-s~~dl~~~~~~~a----~~~~~------ 148 (506)
.+...+.+.+.+.... ..+.+|||||||+|.++..++.. .|+++|+ ++.++..+..+.. ...+.
T Consensus 62 ~~~~~l~~~l~~~~~~--~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~ 139 (281)
T 3bzb_A 62 SGARALADTLCWQPEL--IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRA 139 (281)
T ss_dssp CHHHHHHHHHHHCGGG--TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------C
T ss_pred cHHHHHHHHHHhcchh--cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCC
Confidence 4455666666665422 23459999999999999988876 4889999 7766654443331 22222
Q ss_pred CeEEEEeccccCC--C----CCCCeeEEEEcCcccccCCChHHHHHHHHHhcC---C--CeEEEEEcC
Q 010599 149 PAVIGVLGTIKMP--Y----ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLR---P--GGYWVLSGP 205 (506)
Q Consensus 149 ~~~~~~~d~~~lp--~----~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLk---P--GG~li~~~p 205 (506)
.+.+...+..... + ++++||+|+++.++++ .++...+++++.++|+ | ||.+++...
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 140 SPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-HQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp CCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-GGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred CeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-hHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 2444433322210 1 3578999999888866 4556899999999999 9 998877643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-09 Score=101.15 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM---PYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l---p~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|.++..|++. .++++|+++.++..+. +.+... ..+.+...|.... ....++||+|++.
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4569999999999999998854 4889999886553332 333333 4577777777652 1123589999986
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. ..+. ..++.++.++|||||++++..
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 53 2233 455999999999999999973
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=109.76 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=75.7
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
.+.+.++. .....+|||||||+|.++..++++ + ++++|+ + .+++.+.+. ..+.+...|... |++.+
T Consensus 191 ~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~D~~~-~~p~~- 260 (364)
T 3p9c_A 191 KLLELYHG-FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P-----HVISEAPQF-PGVTHVGGDMFK-EVPSG- 260 (364)
T ss_dssp HHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCCC-
T ss_pred HHHHhccc-ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H-----HHHHhhhhc-CCeEEEeCCcCC-CCCCC-
Confidence 44444431 123469999999999999999875 3 566666 3 333333332 457888888876 77754
Q ss_pred eeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 167 FDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+|++..++|+|.++. ..+|+++.++|||||+|++..
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999999998886533 689999999999999999964
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-09 Score=108.30 Aligned_cols=142 Identities=20% Similarity=0.139 Sum_probs=91.6
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC---CCCCceeEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS---TYPRTYDLIH 420 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~---~~p~s~D~v~ 420 (506)
..+....+|||+|||+|+++..++........|+++|.++.|++.|.++ |+. .++..+.++. .....||+|.
T Consensus 199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~~~~D~Ii 277 (354)
T 3tma_A 199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRIL 277 (354)
T ss_dssp TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTCCCCSEEE
T ss_pred hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccccCCCCEEE
Confidence 3445567899999999999887776320114799999999999988875 331 2222233333 3337799999
Q ss_pred EccccccccC-CCC----HHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecC-CCCCCCeEEEEEEe
Q 010599 421 AHGLFSLYKD-KCN----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPEKILVAVK 494 (506)
Q Consensus 421 ~~~~~~~~~~-~~~----~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~~~k 494 (506)
++--+..-.. ... ...++.++.|+|||||.++|..... +.++.+++ .+|+......- .|.... .+++.+|
T Consensus 278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~~~-~g~~~~~~~~l~~g~l~~-~i~vl~r 353 (354)
T 3tma_A 278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRALP-PGFALRHARVVEQGGVYP-RVFVLEK 353 (354)
T ss_dssp ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHHCC-TTEEEEEEEECCBTTBCC-EEEEEEE
T ss_pred ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHhh-cCcEEEEEEEEEeCCEEE-EEEEEEc
Confidence 9765542111 111 2578999999999999999987653 34566777 88886543332 444333 4444444
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=108.05 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=89.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-CCCce---eEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTY---DLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~p~s~---D~v~~~~~ 424 (506)
..+|||+|||+|.++..|+.. ...+|+++|.|+.+++.|.++ |+...+...+.++.. .+++| |+|.++--
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 347999999999999999875 236899999999999998875 332112222333322 34689 99999621
Q ss_pred cc-----------ccc-----CCCCHHHHHHHHh-hcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCCCe
Q 010599 425 FS-----------LYK-----DKCNIEDILLEMD-RILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE 487 (506)
Q Consensus 425 ~~-----------~~~-----~~~~~~~~l~e~~-RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 487 (506)
+. +.. ..++-..++.++. +.|+|||++++.-.....+.+.+++.+. + ...|.. ...
T Consensus 202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~-~~~D~~----g~~ 274 (284)
T 1nv8_A 202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--V-FLKDSA----GKY 274 (284)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--E-EEECTT----SSE
T ss_pred CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--C-eecccC----CCc
Confidence 11 110 0112226899999 9999999999976666667788877765 2 222222 246
Q ss_pred EEEEEEec
Q 010599 488 KILVAVKQ 495 (506)
Q Consensus 488 ~~l~~~k~ 495 (506)
.+++++++
T Consensus 275 R~~~~~~k 282 (284)
T 1nv8_A 275 RFLLLNRR 282 (284)
T ss_dssp EEEEEECC
T ss_pred eEEEEEEc
Confidence 67777654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=100.06 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~ 155 (506)
.....++..+.... .+.+|||||||+|..+..+++. .++++|+++.++..+...... .+. .+.+...
T Consensus 42 ~~~~~~l~~l~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~ 115 (210)
T 3c3p_A 42 RQTGRLLYLLARIK-----QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD-NGLIDRVELQVG 115 (210)
T ss_dssp HHHHHHHHHHHHHH-----CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HSGGGGEEEEES
T ss_pred HHHHHHHHHHHHhh-----CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-CCCCceEEEEEe
Confidence 33444555444433 2348999999999999999865 488999988766555443332 233 3667777
Q ss_pred cccc-CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 156 GTIK-MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~-lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... ++..++ ||+|++... ..+...+++++.++|||||++++..
T Consensus 116 d~~~~~~~~~~-fD~v~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 116 DPLGIAAGQRD-IDILFMDCD----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp CHHHHHTTCCS-EEEEEEETT----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred cHHHHhccCCC-CCEEEEcCC----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 7754 354456 999998642 2445889999999999999999864
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=107.98 Aligned_cols=125 Identities=12% Similarity=0.066 Sum_probs=82.3
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CCCCCCceeEEEEc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FSTYPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~~~p~s~D~v~~~ 422 (506)
.....+|||+|||+|+++.+|++.-.....|+++|.++.|++.+.++ |+. .+...+.+ ++..+++||+|.++
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d 194 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLD 194 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEEe
Confidence 34456899999999999999986311124799999999999988776 431 12222233 33345799999984
Q ss_pred cccc---cccCCCCH----------------HHHHHHHhhcccCCcEEEEEeC----hhhHHHHHHHHhcCCceEE
Q 010599 423 GLFS---LYKDKCNI----------------EDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 423 ~~~~---~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~~w~~~ 475 (506)
.-.+ .+.+..++ ..+|.++.|+|||||+++++.- .+....++.+++..+++..
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~ 270 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELL 270 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEe
Confidence 3221 11111111 4799999999999999999642 2344567777777776643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.1e-09 Score=101.02 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~ 155 (506)
.....++..+.... .+.+|||||||+|..+..|++. .++++|+++.++..+..... ..+. .+.+..+
T Consensus 46 ~~~~~~l~~l~~~~-----~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~g 119 (242)
T 3r3h_A 46 PEQAQFMQMLIRLT-----RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR-EAKQEHKIKLRLG 119 (242)
T ss_dssp HHHHHHHHHHHHHH-----TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH-HTTCTTTEEEEES
T ss_pred HHHHHHHHHHHhhc-----CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEc
Confidence 33445555554433 2358999999999999999873 48999999987765554433 3343 4777777
Q ss_pred ccccC-CCC-----CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 156 GTIKM-PYA-----SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~l-p~~-----~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+... +.. +++||+|++... ..+...+++++.++|||||+|++..
T Consensus 120 da~~~l~~~~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 120 PALDTLHSLLNEGGEHQFDFIFIDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp CHHHHHHHHHHHHCSSCEEEEEEESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CHHHHHHHHhhccCCCCEeEEEEcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 77543 221 478999998653 2334678999999999999999964
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-08 Score=94.03 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=88.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc-eeccccccCCCCCCceeEEEEcccccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~-~~~~~~~~~~~~p~s~D~v~~~~~~~~~~ 429 (506)
...+|||+|||+|.++..++..+. .+|+++|.++.|++.+.++.. .+ .+...+.++..+|.+||+|.++..|....
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 456899999999999999988752 379999999999999988631 11 22333455555678999999988776544
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEE-eChhhHHHHHHHHhcCCceEEEe
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~-d~~~~~~~~~~~~~~~~w~~~~~ 477 (506)
. .....+|.++.++| ||.+++. ......+.+.+.+...+|++..+
T Consensus 127 ~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 127 K-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp T-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred C-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 2 23357899999999 6655444 25566777888888899987644
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=111.38 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=85.1
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-CCCCceeEEEEccccccc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-~~p~s~D~v~~~~~~~~~ 428 (506)
..+..+|||+|||+|.++..|++.. ....++++|. +.|++.|.+..- +...+.++. .+|. ||+|++.++|+++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~---v~~~~~d~~~~~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPLSG---IEHVGGDMFASVPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCCTT---EEEEECCTTTCCCC-EEEEEEESSGGGS
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhcCC---CEEEeCCcccCCCC-CCEEEEecccccC
Confidence 3456799999999999999998753 1247888999 799987765321 122223332 2445 9999999999854
Q ss_pred cCCCCHH--HHHHHHhhcccCCcEEEEEeCh-------------h----------------hHHHHHHHHhcCCceEEEe
Q 010599 429 KDKCNIE--DILLEMDRILRPEGAIIIRDEV-------------D----------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 429 ~~~~~~~--~~l~e~~RvLrPgG~~ii~d~~-------------~----------------~~~~~~~~~~~~~w~~~~~ 477 (506)
. +.. .+|.++.|+|||||+|+|.|.. . ..+++++++++.+++...+
T Consensus 281 ~---d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 357 (372)
T 1fp1_D 281 S---DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV 357 (372)
T ss_dssp C---HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred C---HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEE
Confidence 3 444 8999999999999999997421 0 2356677888888885543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=102.49 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=71.4
Q ss_pred CEEEEECCCCChhHHHHhhC--------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCC-CCeeEEE
Q 010599 104 RTALDTGCGVASWGAYLWSR--------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM---PYAS-RAFDMAH 171 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l---p~~~-~sfDlV~ 171 (506)
.+|||||||+|..+..|++. .|+++|+++.++..+. .....+.+.++|.... ++.. .+||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 48999999999999998763 4899999998764433 2234578888888763 5433 4799999
Q ss_pred EcCcccccCCChHHHHHHHHH-hcCCCeEEEEEcC
Q 010599 172 CSRCLIPWGANDGRYMIEVDR-VLRPGGYWVLSGP 205 (506)
Q Consensus 172 ~~~~l~~~~~~~~~~l~e~~r-vLkPGG~li~~~p 205 (506)
+... | .+...++.++.| +|||||+|++...
T Consensus 158 ~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 158 IDNA--H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EESS--C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred ECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 8654 3 356789999997 9999999999753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.7e-09 Score=100.12 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=77.3
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~s 166 (506)
.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+....+ ..+. .+.+...|.....+++++
T Consensus 82 ~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLNLN--KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-KFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHH-HTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcCCC--CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCCcEEEEEcChhhcccCCCc
Confidence 445555433 3459999999999999998875 58889998866654443333 3343 466777777664436678
Q ss_pred eeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 167 FDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
||+|++.. +++..+++++.++|||||.+++..+.
T Consensus 159 ~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVDV------REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEECS------SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999842 34568899999999999999998764
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-09 Score=102.92 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=70.5
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCC------CCcee
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTY------PRTYD 417 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~------p~s~D 417 (506)
+.++|||+|||+|..+..|+..-.....|+++|.++.|++.|.++ |+...+...+.+ ++.+ +++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 346899999999999998876410125899999999999988765 331112111121 2223 57999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|+++.. ......++.++.|+|||||.+++.+
T Consensus 159 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9998532 2356789999999999999999865
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-09 Score=106.23 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHH-H-HHcCCCeEEE--EeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQF-A-LERGVPAVIG--VLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~~-a-~~~~~~~~~~--~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||||||+|.++..++++ .|+++|+++ ++..+..+. . ...+.++.+. +.|+..+| +++||+|+|..+
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~- 157 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG- 157 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-
T ss_pred CCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-
Confidence 4569999999999999999886 699999998 531110000 0 0001145666 77887776 679999999866
Q ss_pred cccCCCh----H---HHHHHHHHhcCCCe--EEEEEc
Q 010599 177 IPWGAND----G---RYMIEVDRVLRPGG--YWVLSG 204 (506)
Q Consensus 177 ~~~~~~~----~---~~l~e~~rvLkPGG--~li~~~ 204 (506)
.+ ..++ . .+|.++.++||||| .|++.+
T Consensus 158 ~~-~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 158 ES-NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp CC-CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred cC-CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 22 2221 1 37899999999999 999865
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=105.29 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHH-HH-HHcCCCeEEE--EeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQ-FA-LERGVPAVIG--VLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~-~a-~~~~~~~~~~--~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
++.+|||||||+|.++..++++ .|+++|+++ ++..+..+ .. ...+.++.+. +.|+..++ +++||+|+|..+
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~- 149 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG- 149 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-
T ss_pred CCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-
Confidence 4569999999999999999886 699999998 43111000 00 0011145666 77877765 679999999765
Q ss_pred cccCCCh----H---HHHHHHHHhcCCCe--EEEEEc
Q 010599 177 IPWGAND----G---RYMIEVDRVLRPGG--YWVLSG 204 (506)
Q Consensus 177 ~~~~~~~----~---~~l~e~~rvLkPGG--~li~~~ 204 (506)
.+ ..+. . .+|.++.++||||| .|++.+
T Consensus 150 ~~-~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 150 ES-SPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp CC-CSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cc-CCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 22 2221 1 37899999999999 999865
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.7e-09 Score=103.79 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=78.9
Q ss_pred CCCceEEeecC------cccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccce-eccccccCCC--CCCceeEEEE
Q 010599 351 GRYRNIMDMNA------GFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI-YHDWCEAFST--YPRTYDLIHA 421 (506)
Q Consensus 351 ~~~~~vLD~gc------G~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~-~~~~~~~~~~--~p~s~D~v~~ 421 (506)
.+..+|||+|| |+|+ ..+++.-.....|+++|.++. + + ++ .. + +.++.. ++++||+|+|
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v----~-~v-~~~i---~gD~~~~~~~~~fD~Vvs 129 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V----S-DA-DSTL---IGDCATVHTANKWDLIIS 129 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B----C-SS-SEEE---ESCGGGCCCSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C----C-CC-EEEE---ECccccCCccCcccEEEE
Confidence 34568999999 6676 222221000147999999976 2 1 22 12 2 233322 2489999999
Q ss_pred ccccccc--------cCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEE
Q 010599 422 HGLFSLY--------KDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVA 492 (506)
Q Consensus 422 ~~~~~~~--------~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~ 492 (506)
+...+.. .+...++.+|.++.|+|||||.|++.... ....++.+++++.+|.......- ...+.|.+|++
T Consensus 130 n~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~as-r~~s~e~~lv~ 208 (290)
T 2xyq_A 130 DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNV-NASSSEAFLIG 208 (290)
T ss_dssp CCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGG-GTTSSCEEEEE
T ss_pred cCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEc-CCCchheEEec
Confidence 6443211 11112458999999999999999996633 33457888888887753322221 12236788887
Q ss_pred Ee
Q 010599 493 VK 494 (506)
Q Consensus 493 ~k 494 (506)
+.
T Consensus 209 ~~ 210 (290)
T 2xyq_A 209 AN 210 (290)
T ss_dssp EE
T ss_pred CC
Confidence 76
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=103.04 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=68.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--------cceeccccccCCC---CCCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--------IGIYHDWCEAFST---YPRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--------~~~~~~~~~~~~~---~p~s~D~v~ 420 (506)
...+|||+|||+|.++..|++......+|+++|.++.+++.+.++.- ...+...+.++.. .+++||+|+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 45689999999999999988641111489999999999998876521 1112222223221 237899999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+...+.+ ++.++.|+|||||++++....
T Consensus 157 ~~~~~~~---------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 157 VGAAAPV---------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp ECSBBSS---------CCHHHHHTEEEEEEEEEEESC
T ss_pred ECCchHH---------HHHHHHHhcCCCcEEEEEEec
Confidence 9777652 347899999999999997543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.90 E-value=7.7e-09 Score=101.48 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=76.6
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYA 163 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~ 163 (506)
.+...+... ++.+|||+|||+|.++..+++. .++++|+++..+..+..+ ....+. .+.+...|.... ++
T Consensus 103 ~i~~~~~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 103 FIAMMLDVK--EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCGGGC-CS
T ss_pred HHHHHhCCC--CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH-HHHcCCCCCEEEEECCHHHc-cc
Confidence 344445333 3459999999999999988765 388899988666444433 333343 466777777665 66
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++||+|++.. +++..++.++.++|+|||.+++..+.
T Consensus 179 ~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 179 EKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp CCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred CCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 77899999842 34568899999999999999998753
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.9e-09 Score=104.07 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEeccccC--CCCCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIKM--PYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~l--p~~~~sfDlV~ 171 (506)
.+.+|||||||+|.++..|++. .++++|+++.++..+...+... ....+.+...|.... .+++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 3469999999999999999876 4899999887665555443321 124577888886543 23467899999
Q ss_pred EcCcccccC--CC--hHHHHHHHHHhcCCCeEEEEEc
Q 010599 172 CSRCLIPWG--AN--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~--~~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.... ++. .+ ...+++++.++|+|||.|++..
T Consensus 200 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 96432 221 11 2689999999999999999974
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-09 Score=112.93 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=73.8
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHH-------Hhc----Cc-cceecccc-ccCCC---
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI-------YER----GL-IGIYHDWC-EAFST--- 411 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~-------~~r----g~-~~~~~~~~-~~~~~--- 411 (506)
+......+|||+|||+|.++..|+... ....|+++|.++.+++.| .++ |+ ...+...+ .++..
T Consensus 238 l~l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~ 316 (433)
T 1u2z_A 238 CQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR 316 (433)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc
Confidence 344456789999999999999998741 123799999999998887 543 32 12222222 23321
Q ss_pred ---CCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 412 ---YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 412 ---~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+++||+|+++.++. ..++..+|.|+.|+|||||.+++.+..
T Consensus 317 ~~~~~~~FDvIvvn~~l~----~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 317 VAELIPQCDVILVNNFLF----DEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp HHHHGGGCSEEEECCTTC----CHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccccCCCCEEEEeCccc----cccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 137899999865541 246778999999999999999998643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-10 Score=121.73 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccC--CCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKM--PYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~-~~~~~~~~d~~~l--p~~~~sfDlV~~~~~l 176 (506)
.+.+|||||||.|.++..|++.| |+++|+++.++..+. ..|.+.+ .++.+.+.++.++ ++++++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 34689999999999999999985 888888887765444 3444454 6788888888877 5678899999999999
Q ss_pred cccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010599 177 IPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 177 ~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
+|..+.. ...+..+.+.|+++|..++
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred hcCCCHHHHHHHHHHHHHhccccceee
Confidence 9964321 2445567777887765544
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-09 Score=105.90 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=78.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
..|.++|.+.... -++.+|||||||+|.++...++.| |+++|.++ ++ ..+.+.+..++.. +.+...+++.+
T Consensus 69 ~aY~~Ai~~~~~~--~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~~ 144 (376)
T 4hc4_A 69 DAYRLGILRNWAA--LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVETV 144 (376)
T ss_dssp HHHHHHHHTTHHH--HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhCHHh--cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeeee
Confidence 4454555433211 134589999999999988887764 89999986 54 4445566666653 67777888888
Q ss_pred CCCCCCeeEEEEcCccccc--CCChHHHHHHHHHhcCCCeEEEEE
Q 010599 161 PYASRAFDMAHCSRCLIPW--GANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~--~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++ +.||+|+|......+ ......++....|+|||||.++-.
T Consensus 145 ~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 145 ELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 776 579999984332211 223478888899999999998753
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-09 Score=99.38 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=71.4
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-CC---CCCeeEE
Q 010599 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-P-YA---SRAFDMA 170 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l-p-~~---~~sfDlV 170 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+..... ..+. .+.+...|.... + ++ .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE-RANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 458999999999999999876 38899998876655544333 3343 367777776432 2 11 2679999
Q ss_pred EEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 171 ~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++.... .....++.++.++|||||++++...
T Consensus 138 ~~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 138 FIDADK----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EECSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEcCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 986542 2347899999999999999988754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-09 Score=103.33 Aligned_cols=140 Identities=18% Similarity=0.107 Sum_probs=86.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----c--------cceeccccccCCCC---CCce
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----L--------IGIYHDWCEAFSTY---PRTY 416 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----~--------~~~~~~~~~~~~~~---p~s~ 416 (506)
..+|||+|||+|.++..+++.+ ..+|+++|.++.|++.|+++- + ...+...+++...+ +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4689999999999999998863 368999999999999998752 1 11122222221111 6789
Q ss_pred eEEEEccccccccCCCC--HHHHHHHHhhcccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeec-CCCCCCCeE
Q 010599 417 DLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDH-EDGPLVPEK 488 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~ 488 (506)
|+|+++..... ..... ...++.++.|+|||||.+++... .+....+.+.++..--.+..... ...-...+.
T Consensus 154 D~Ii~d~~~~~-~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~ 232 (281)
T 1mjf_A 154 DVIIADSTDPV-GPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWA 232 (281)
T ss_dssp EEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEE
T ss_pred eEEEECCCCCC-CcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEE
Confidence 99998554321 11112 26789999999999999999632 22333343333333222332211 111123577
Q ss_pred EEEEEec
Q 010599 489 ILVAVKQ 495 (506)
Q Consensus 489 ~l~~~k~ 495 (506)
+++|.|.
T Consensus 233 ~~~as~~ 239 (281)
T 1mjf_A 233 FLVGVKG 239 (281)
T ss_dssp EEEEEES
T ss_pred EEEeeCC
Confidence 8888886
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-09 Score=106.77 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEeccccCCC--CCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIKMPY--ASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~----~~~~~~~~~~~d~~~lp~--~~~sfDlV~ 171 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+...+.. .....+.+...|....+. ++++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 3469999999999999999876 488999988666544433321 112457788888766543 478999999
Q ss_pred EcCcccccCCCh----HHHHHHHHHhcCCCeEEEEEcC
Q 010599 172 CSRCLIPWGAND----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 172 ~~~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.... +..+.. ..+++++.++|||||+|++...
T Consensus 175 ~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 175 IDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 97654 322222 5889999999999999999764
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.9e-09 Score=104.58 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|..+..|++. .++++|+++.++..+..+.. ..+. ++.+...|...++..+++||+|++...
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~-~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLS-RLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH-HHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH-HhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 4559999999999999999863 38999998876655444333 3344 567777888776655678999998421
Q ss_pred ------ccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 176 ------LIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 ------l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+.+ .++ ...+|.++.++|||||+|++++..
T Consensus 197 csg~g~~~~-~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 197 CTGSGTIHK-NPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp TTSTTTCC---------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCcccccC-ChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 211 111 147899999999999999998643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.9e-09 Score=104.85 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=73.1
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-----------CCCeEEEE
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-----------GVPAVIGV 154 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~-----------~~~~~~~~ 154 (506)
.+.+.+... ++.+|||+|||+|.++..++.. .++++|+++..+..+..+..... ...+.+..
T Consensus 96 ~~l~~l~~~--~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 344444333 4559999999999999998764 38899998876655554443311 13577778
Q ss_pred eccccC--CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 155 LGTIKM--PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 155 ~d~~~l--p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.|...+ ++++++||+|++... ++..++.++.++|||||.|++..+
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 888765 566778999998542 233479999999999999998865
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.8e-10 Score=107.33 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=76.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCC--ChhHHHHhh-----CCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGV--ASWGAYLWS-----RNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~--G~~~~~L~~-----~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~ 158 (506)
..|+......+.. ....++|||||||+ +.++..+++ ..|+++|.|+.|+..+...+.......+.+.++|+.
T Consensus 63 r~fl~rav~~l~~-~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~ 141 (277)
T 3giw_A 63 RDWMNRAVAHLAK-EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADML 141 (277)
T ss_dssp HHHHHHHHHHHHH-TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTT
T ss_pred HHHHHHHHHHhcc-ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEeccc
Confidence 3444555555521 12346899999997 334444443 258999999987765544333211123678888886
Q ss_pred cCC----CC--CCCee-----EEEEcCcccccCCC--hHHHHHHHHHhcCCCeEEEEEc
Q 010599 159 KMP----YA--SRAFD-----MAHCSRCLIPWGAN--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 159 ~lp----~~--~~sfD-----lV~~~~~l~~~~~~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++ .+ .++|| .|+++.+|||+.++ +..+++++.+.|+|||+|+++.
T Consensus 142 ~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 142 DPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp CHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred ChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 642 11 34565 57888888665443 3689999999999999999985
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=114.84 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=74.6
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeE
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDL 418 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D~ 418 (506)
+..+...+..+|||+|||+|.++..+++.+. ..|+++|.++ |++.|.++ |+...+.....++.. +++.||+
T Consensus 151 l~~l~~~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~ 227 (480)
T 3b3j_A 151 LQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDI 227 (480)
T ss_dssp HHTGGGTTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEE
T ss_pred HHhhhhcCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEE
Confidence 3333333456899999999999999888642 4899999997 98877664 432222333344433 3589999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
|.+..++.+..+ .++...|.++.|+|||||++++
T Consensus 228 Ivs~~~~~~~~~-e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 228 IISEPMGYMLFN-ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EECCCCHHHHTC-HHHHHHHHHGGGGEEEEEEEES
T ss_pred EEEeCchHhcCc-HHHHHHHHHHHHhcCCCCEEEE
Confidence 999777664432 2456678899999999999986
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-09 Score=103.73 Aligned_cols=117 Identities=11% Similarity=0.147 Sum_probs=73.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK 159 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~ 159 (506)
..+++.+.+.+......+.+|||+|||+|.++..++.+ .++++|+++.++..+..+.. ..+.. +.+...|...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 49 IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE-QNNLSDLIKVVKVPQKT 127 (254)
T ss_dssp HHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEECCTTC
T ss_pred HHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HcCCCccEEEEEcchhh
Confidence 44545555544321124568999999999998888764 58999999877765554433 34443 6777777654
Q ss_pred C---CCC---CCCeeEEEEcCcccccCC--------------ChHHHHHHHHHhcCCCeEEEEE
Q 010599 160 M---PYA---SRAFDMAHCSRCLIPWGA--------------NDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 160 l---p~~---~~sfDlV~~~~~l~~~~~--------------~~~~~l~e~~rvLkPGG~li~~ 203 (506)
. +++ +++||+|+|+..+++... ....++.++.++|||||.+.+.
T Consensus 128 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 128 LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 2 444 268999999866544320 0124577889999999987664
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-08 Score=94.59 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=65.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC-------------CcEEEecCccchHHHHHHHHHHcCCCeEEE-EeccccCC------
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-------------NVIAMSFAPRDSHEAQVQFALERGVPAVIG-VLGTIKMP------ 161 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-------------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~-~~d~~~lp------ 161 (506)
++.+|||+|||+|.++..|+++ .++++|+++... ...+.+. ..|....+
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHH
Confidence 3459999999999999998864 278999987320 1234555 55654332
Q ss_pred --CCCCCeeEEEEcCcccc---cCCCh-------HHHHHHHHHhcCCCeEEEEEcC
Q 010599 162 --YASRAFDMAHCSRCLIP---WGAND-------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 --~~~~sfDlV~~~~~l~~---~~~~~-------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++++||+|+|..+++. +..+. ..+++++.++|||||.|++...
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 34568999999764421 11122 3789999999999999999864
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=95.26 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=66.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-----------CCCee
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA-----------SRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~-----------~~sfD 168 (506)
++.+|||+|||+|.++..++++ .|+++|+++... ...+.+.+.|+...+.. .++||
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence 4569999999999999999987 489999987421 12467778887665421 14899
Q ss_pred EEEEcCcccc---cCCC-------hHHHHHHHHHhcCCCeEEEEEc
Q 010599 169 MAHCSRCLIP---WGAN-------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~---~~~~-------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|+|...... +..+ ...++.++.++|||||.|++..
T Consensus 94 ~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 94 DVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999653210 0001 1367889999999999999875
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=101.45 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC-CCC--CCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-PYA--SRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l-p~~--~~sfDlV~~~ 173 (506)
+.+|||||||+|.++..+++. .++++|+++..+..+..... ..+. .+.+...|.... +.. +++||+|++.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVK-ALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH-HTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 458999999999999998875 48899998866644443332 3343 367777776553 432 5789999997
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
... .+...+++++.++|||||.+++..
T Consensus 134 ~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAK----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 653 345889999999999999999974
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-09 Score=107.78 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=83.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-CCCCceeEEEEccccccccC
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-~~p~s~D~v~~~~~~~~~~~ 430 (506)
+..+|||||||+|.++..|++.. ....++.+|. +.|++.|.+.. + +...+.++. .+| .||+|++.++|+++.+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~--~-v~~~~~d~~~~~~-~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTGNE--N-LNFVGGDMFKSIP-SADAVLLKWVLHDWND 266 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCCCS--S-EEEEECCTTTCCC-CCSEEEEESCGGGSCH
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcccCC--C-cEEEeCccCCCCC-CceEEEEcccccCCCH
Confidence 45689999999999999998752 1246888899 58887765421 1 222223332 233 5999999999985441
Q ss_pred CCCHHHHHHHHhhcccC---CcEEEEEeChh-----------------------------hHHHHHHHHhcCCceEEEe
Q 010599 431 KCNIEDILLEMDRILRP---EGAIIIRDEVD-----------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrP---gG~~ii~d~~~-----------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
. ....+|.++.|+||| ||+++|.|... ..+++++++++.+++...+
T Consensus 267 ~-~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 344 (358)
T 1zg3_A 267 E-QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKI 344 (358)
T ss_dssp H-HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred H-HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEE
Confidence 1 233899999999999 99999965320 2356778888999986544
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-09 Score=100.73 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=100.1
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCC
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPR 414 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~ 414 (506)
|..++..+ ....+|||+|||+|-|+..+.... ....|.++|.++.|++++.++ |+...+ .+ .++.. .+.
T Consensus 123 Y~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~~~~-~v-~D~~~~~p~~ 197 (281)
T 3lcv_B 123 YRELFRHL--PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVPHRT-NV-ADLLEDRLDE 197 (281)
T ss_dssp HHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCCEEE-EE-CCTTTSCCCS
T ss_pred HHHHHhcc--CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceE-EE-eeecccCCCC
Confidence 66666655 347799999999999998886642 236899999999999988877 332211 11 23332 349
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC--hh---------hHHHHHHHHhcCCceEEEeecCCCC
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--VD---------EIIKVKKIVGGMRWDTKMVDHEDGP 483 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~--~~---------~~~~~~~~~~~~~w~~~~~~~~~~~ 483 (506)
.||+|.+.-+++++..... . .+.++...|+|+|.+|--+. +. +...+++.+..-+|.+...+..
T Consensus 198 ~~DvaL~lkti~~Le~q~k-g-~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~--- 272 (281)
T 3lcv_B 198 PADVTLLLKTLPCLETQQR-G-SGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIG--- 272 (281)
T ss_dssp CCSEEEETTCHHHHHHHST-T-HHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEET---
T ss_pred CcchHHHHHHHHHhhhhhh-H-HHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeec---
Confidence 9999999888886642211 2 34499999999999999877 21 6788888888889987766655
Q ss_pred CCCeEEEEEEe
Q 010599 484 LVPEKILVAVK 494 (506)
Q Consensus 484 ~~~~~~l~~~k 494 (506)
.|.+.+.+|
T Consensus 273 --nEl~y~i~k 281 (281)
T 3lcv_B 273 --NELIYVIQK 281 (281)
T ss_dssp --TEEEEEEC-
T ss_pred --CeeEEEecC
Confidence 465555544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.84 E-value=4e-09 Score=100.07 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=69.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCC----eEEEEeecCCCcccHHHHHhc----Cc----cceeccccccCCC-C------
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKL----WVMNVVPTLADKNTLGVIYER----GL----IGIYHDWCEAFST-Y------ 412 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~----~~~~v~~~d~~~~~l~~~~~r----g~----~~~~~~~~~~~~~-~------ 412 (506)
+..+|||+|||+|.++..|++... ...+|+++|.++.+++.|.++ ++ ...+...+.++.. .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 346899999999999999987431 124899999999999988876 21 1112222233222 2
Q ss_pred CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+++||+|++...+++ ++.++.++|||||++++.-.
T Consensus 160 ~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEc
Confidence 278999999877763 35889999999999999654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-09 Score=108.30 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=85.8
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-CCCCceeEEEEccccccc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-~~p~s~D~v~~~~~~~~~ 428 (506)
..+..+|||||||+|.++..|++.. ....++.+|. +.|++.|.++.-+.. .+.++. .+|.. |+|++.++++++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~---~~~D~~~~~p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQFPGVTH---VGGDMFKEVPSG-DTILMKWILHDW 272 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCCTTEEE---EECCTTTCCCCC-SEEEEESCGGGS
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhcCCeEE---EeCCcCCCCCCC-CEEEehHHhccC
Confidence 4567899999999999999998732 1246899999 688887766532221 122322 34544 999999999855
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEeChh------------------------------hHHHHHHHHhcCCceEEEe
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVD------------------------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------------------------~~~~~~~~~~~~~w~~~~~ 477 (506)
.. .+...+|+++.|+|||||+|+|.|..- ..+++++++++.+++...+
T Consensus 273 ~d-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~ 350 (364)
T 3p9c_A 273 SD-QHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKS 350 (364)
T ss_dssp CH-HHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEE
Confidence 31 245689999999999999999965320 1355778888899986543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-09 Score=106.27 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=65.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEec----CccchHHHHHHHHHHcC-CCeEEEEe-ccccCCCCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSF----APRDSHEAQVQFALERG-VPAVIGVL-GTIKMPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdi----s~~dl~~~~~~~a~~~~-~~~~~~~~-d~~~lp~~~~sfDlV~~~~ 174 (506)
++.+|||||||+|.++..++++ .|+++|+ ++.++.... ....+ ..+.+.+. |+..+| .++||+|+|..
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~ 156 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDI 156 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEECC
Confidence 4569999999999999999987 5899998 443221100 00111 13555555 565554 56899999976
Q ss_pred ccc--ccCCChH---HHHHHHHHhcCCCeEEEEEcC
Q 010599 175 CLI--PWGANDG---RYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 175 ~l~--~~~~~~~---~~l~e~~rvLkPGG~li~~~p 205 (506)
++. ++..+.. .+|.++.++|||||.|++.+.
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 542 1111122 478899999999999998653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=100.82 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
...+.+++.+.+.+... .+.+|||+|||+|.++..++.. .++++|+|+..+..+.. .+...+.. +.+...|.
T Consensus 106 ~~te~lv~~~l~~~~~~--~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~-n~~~~~l~~~v~~~~~D~ 182 (284)
T 1nv8_A 106 PETEELVELALELIRKY--GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEF 182 (284)
T ss_dssp TTHHHHHHHHHHHHHHH--TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESST
T ss_pred hhHHHHHHHHHHHhccc--CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcc
Confidence 34466767776665322 3348999999999999999865 48899998876654443 33344543 77887777
Q ss_pred ccCCCCCCCe---eEEEEcCccccc----------C--------CChHHHHHHHH-HhcCCCeEEEEEcCC
Q 010599 158 IKMPYASRAF---DMAHCSRCLIPW----------G--------ANDGRYMIEVD-RVLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~lp~~~~sf---DlV~~~~~l~~~----------~--------~~~~~~l~e~~-rvLkPGG~li~~~p~ 206 (506)
.. +++ ++| |+|+++..++.. . .+...+++++. +.|+|||.|++..+.
T Consensus 183 ~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 183 LE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp TG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred hh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 55 222 478 999997433211 1 11127899999 999999999998653
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=107.64 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=69.9
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEEcCccc
Q 010599 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM--PYASRAFDMAHCSRCLI 177 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l--p~~~~sfDlV~~~~~l~ 177 (506)
.+|||||||+|.++..|++. .++++|+++.++..+...+.......+.+.+.|.... .+++++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~- 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA- 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST-
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC-
Confidence 48999999999999999873 4788888775543333222111123577777887543 3456899999996432
Q ss_pred ccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010599 178 PWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 178 ~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.... ...+++++.++|+|||+|++..
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 22111 1689999999999999999865
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=98.80 Aligned_cols=144 Identities=14% Similarity=0.100 Sum_probs=91.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCCCCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~p~s~D~v~ 420 (506)
..++|||+|||+|.++..+++.. .+..|+.+|.+++|++.|++.- + ...+.-.+++ ++..+++||+|.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35789999999999999998762 2368999999999999998752 1 1111222222 222358999999
Q ss_pred EccccccccC-CCCHHHHHHHHhhcccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec-CCC-CCCCeEEEEE
Q 010599 421 AHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH-EDG-PLVPEKILVA 492 (506)
Q Consensus 421 ~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~-~~~-~~~~~~~l~~ 492 (506)
++........ ......++.++.|+|||||.+++.... +....+.+.+++.--.+..... ... +...+.+++|
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~a 233 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIG 233 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEe
Confidence 9654322111 111257999999999999999997432 2344454555555333333221 111 1235788899
Q ss_pred Eecc
Q 010599 493 VKQY 496 (506)
Q Consensus 493 ~k~~ 496 (506)
.|++
T Consensus 234 sk~~ 237 (275)
T 1iy9_A 234 SKKY 237 (275)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9873
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=101.79 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=85.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCCCCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTYPRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~p~s~D~v~~ 421 (506)
..+|||+|||+|.++..+++.. .+.+|+++|.++.+++.|+++- + ...+...+.+ ++..+++||+|.+
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4689999999999999998862 1368999999999999988752 1 1111112222 2334588999998
Q ss_pred ccccccccCCC--CHHHHHHHHhhcccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec-C-CCCCCCeEEEEE
Q 010599 422 HGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH-E-DGPLVPEKILVA 492 (506)
Q Consensus 422 ~~~~~~~~~~~--~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~-~-~~~~~~~~~l~~ 492 (506)
+..-....... ....++.++.|+|||||.+++.... .....+.+.+++.--.+..... . .-+...+.+++|
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~a 249 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 249 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEe
Confidence 53221011111 1267999999999999999997432 2223333333333223332221 1 111235778889
Q ss_pred Eecc
Q 010599 493 VKQY 496 (506)
Q Consensus 493 ~k~~ 496 (506)
.|++
T Consensus 250 s~~~ 253 (296)
T 1inl_A 250 SKGI 253 (296)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 8874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=96.62 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=84.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-------ceeccccccCCCCCCceeEEEEccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-------GIYHDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-------~~~~~~~~~~~~~p~s~D~v~~~~~ 424 (506)
..++|||+|||+|.++..+.+.+ ..|+.+|.+++|++.|+++--. ..+....++...+.++||+|.++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 34789999999999999998863 6899999999999998765210 01111122222222889999994
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-----hHHHHHHHHhcCCceEEEeecCCCC-CCCeEEEEEEecc
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDHEDGP-LVPEKILVAVKQY 496 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~l~~~k~~ 496 (506)
-.++..++.++.|+|||||.+++..... ....+.+.+++. +.........-| .....+++|.|.+
T Consensus 147 ------~~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as~~~ 217 (262)
T 2cmg_A 147 ------QEPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_dssp ------SCCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEESSC
T ss_pred ------CCChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEeeCCC
Confidence 2344558999999999999999963221 233333334443 332222222111 2346677888863
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-09 Score=107.13 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
...+|||||||+|.++..++++ .++++|+ +. +++.+++. ..+.+...|... +++. ||+|++..+++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-----~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh 257 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQ-----VVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILH 257 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH-----HHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HH-----HHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhc
Confidence 3459999999999999999865 3677776 43 33334332 237777778755 5553 99999999998
Q ss_pred ccCCChH--HHHHHHHHhcCC---CeEEEEEc
Q 010599 178 PWGANDG--RYMIEVDRVLRP---GGYWVLSG 204 (506)
Q Consensus 178 ~~~~~~~--~~l~e~~rvLkP---GG~li~~~ 204 (506)
||.+ +. .+|+++.++||| ||++++..
T Consensus 258 ~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 258 NWTD-KDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp GSCH-HHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 8754 44 999999999999 99999975
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=102.55 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccccCCCC-------CCceeEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFSTY-------PRTYDLI 419 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~~~~~-------p~s~D~v 419 (506)
+..+|||+|||+|.++..++..+. .|+++|.++.|++.|.+. ++.. .+...+.++..+ +++||+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 345899999999999999998763 899999999999988775 3211 122223332221 4689999
Q ss_pred EEccc-cccc------cCCCCHHHHHHHHhhcccCCcEEEEEeCh-------hhHHHHHHHHhcCCceEE
Q 010599 420 HAHGL-FSLY------KDKCNIEDILLEMDRILRPEGAIIIRDEV-------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 420 ~~~~~-~~~~------~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------~~~~~~~~~~~~~~w~~~ 475 (506)
.++-- |... ....+...+|.++.|+|||||.+++.... ...+.+++.+..++.++.
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 98432 1111 01123567999999999999998875421 133445555667887765
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.3e-08 Score=92.70 Aligned_cols=97 Identities=13% Similarity=0.230 Sum_probs=69.8
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CC-------------
Q 010599 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MP------------- 161 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~-lp------------- 161 (506)
+.+|||||||+|.++..+++. .++++|+++..+..+..... ..+.. +.+...|... ++
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK-ENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 458999999999999998864 48899998866644443332 33432 5666666533 12
Q ss_pred -CCC--CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 -YAS--RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 -~~~--~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++ ++||+|++.... .+...+++++.++|||||++++..
T Consensus 140 ~f~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTCCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 789999997543 234688999999999999999864
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-09 Score=101.14 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=70.1
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--CceeEEEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP--RTYDLIHA 421 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p--~s~D~v~~ 421 (506)
...+..+|||+|||+|.++..|++... .+|+++|.++.+++.|.++ |+. .+...+.++ ..++ ..||+|++
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPKAPYDVIIV 164 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCCCCccEEEE
Confidence 334456899999999999999987532 4799999999999998876 221 122222332 1233 35999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+.++.+.. .++.++|||||.+++....
T Consensus 165 ~~~~~~~~---------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 165 TAGAPKIP---------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred CCcHHHHH---------HHHHHhcCCCcEEEEEEec
Confidence 88876433 4889999999999997654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=97.48 Aligned_cols=98 Identities=10% Similarity=-0.011 Sum_probs=69.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc----ccCCCC------CCcee
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC----EAFSTY------PRTYD 417 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~----~~~~~~------p~s~D 417 (506)
+.++|||+|||+|..+..|++.-.....|+++|.++.+++.|.++ |+...+...+ +.++.+ +++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 356899999999999998876310125899999999999988764 4321111111 112223 47999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|+++.. .......+.++.|+|||||.+++.+
T Consensus 150 ~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 150 FGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9998532 2245789999999999999999965
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-09 Score=102.02 Aligned_cols=105 Identities=13% Similarity=0.003 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC----CCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY----ASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~----~~~sfDlV~ 171 (506)
++.+|||+|||+|..+..|++. .++++|+++..+.... +.+...+. .+.+...|...++. ..++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK-SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHH-HHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 4559999999999999998862 4899999887665443 33334454 56777778766653 357899999
Q ss_pred EcCcccc-----------------cCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 172 CSRCLIP-----------------WGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~~~~l~~-----------------~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+...... +......++.++.++|||||++++++...
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 8622111 11334789999999999999999987543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-09 Score=105.27 Aligned_cols=103 Identities=9% Similarity=-0.070 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC---eEEEEeccccCCC----CCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIKMPY----ASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~---~~~~~~d~~~lp~----~~~sfDlV~~ 172 (506)
++.+|||+|||+|.++..++..+ |+++|+++.++..+..+... .++. +.+.+.|+..+.. ..++||+|++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~-~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 34589999999999999998874 88899988777555544433 3443 6777777755421 1568999999
Q ss_pred cCcccc---------cCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 173 SRCLIP---------WGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~---------~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
...... ...+...++.++.++|||||+|++...
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 643211 112236889999999999999887654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.80 E-value=4.4e-09 Score=99.96 Aligned_cols=96 Identities=17% Similarity=0.057 Sum_probs=67.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCe-----EEEEeecCCCcccHHHHHhcCc--------cceeccccccCC-CCC--Cc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLW-----VMNVVPTLADKNTLGVIYERGL--------IGIYHDWCEAFS-TYP--RT 415 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~-----~~~v~~~d~~~~~l~~~~~rg~--------~~~~~~~~~~~~-~~p--~s 415 (506)
...+|||+|||+|.++..|++.... ...|+++|.++.+++.|.++.- ...+...+.+.. .++ ++
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 163 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP 163 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCCC
Confidence 3458999999999999988763100 1379999999999998877521 111111122222 123 78
Q ss_pred eeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
||+|++...+.+. +.++.++|||||++++.-.
T Consensus 164 fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 164 YNAIHVGAAAPDT---------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred ccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEe
Confidence 9999998777633 3789999999999999754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.2e-09 Score=105.33 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=69.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc---cceeccccccCCCCCCceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~---~~~~~~~~~~~~~~p~s~D~v~~~~~~ 425 (506)
..+|||||||+|.++...++.|. -.|+++|.| +|+..|.+. |+ +..++.-.+++ .+|..||+|.|--+-
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~~~~~~-~lpe~~DvivsE~~~ 159 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA--RRVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETV-ELPEQVDAIVSEWMG 159 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCB
T ss_pred CCEEEEeCCCccHHHHHHHHhCC--CEEEEEeCh-HHHHHHHHHHHHcCCCceEEEEeeeeeee-cCCccccEEEeeccc
Confidence 45799999999999877676653 378999998 588876643 44 23333222333 256899999985444
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
..+.+...++.++...+|.|||||.++-
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccchhhhHHHHHHhhCCCCceECC
Confidence 4444555788999999999999998875
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.8e-09 Score=100.77 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=79.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC--CCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~--p~s~D~v~~~~~~ 425 (506)
+..+|||+|||+|.|+..++.... ...|+++|.++.+++.|.+. |+. .....+.++..+ +++||+|.++...
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECCcc
Confidence 346899999999999999987521 24899999999999988764 221 111222333222 4789999984332
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-------hHHHHHHHHhcCCceEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-------~~~~~~~~~~~~~w~~~ 475 (506)
....++.++.|+|||||.+++.+... ..+.++.+...+++++.
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 55679999999999999999976532 22334455555666544
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=94.65 Aligned_cols=134 Identities=11% Similarity=-0.005 Sum_probs=96.0
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c--cceeccccccC-CCCCCceeEEEEccccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L--IGIYHDWCEAF-STYPRTYDLIHAHGLFS 426 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~--~~~~~~~~~~~-~~~p~s~D~v~~~~~~~ 426 (506)
....+|||+|||+|-|+..+. .. ..++++|+++.|++++.+.. . ...-..++... ...+.+||+|.+.-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~---~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GI---ASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TC---SEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cC---CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 457799999999999998877 22 58999999999999988872 1 11111122222 22449999999987777
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEe--Ch---------hhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEec
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRD--EV---------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 495 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d--~~---------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 495 (506)
++.+... . .+.++...|+|+|.+|--+ .+ .+...+++.+..-.|.+...+.. .|.+.+.+|.
T Consensus 180 ~LE~q~~-~-~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~-----nEl~~~i~~~ 252 (253)
T 3frh_A 180 LLEREQA-G-SAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIG-----TELIYLIKKN 252 (253)
T ss_dssp HHHHHST-T-HHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEET-----TEEEEEEEEC
T ss_pred Hhhhhch-h-hHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecC-----ceEEEEEecC
Confidence 6653322 1 3448888999999999877 22 16778888889999998877665 6777777774
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=96.68 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecc
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGT 157 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~ 157 (506)
...++..+.... .+.+|||||||+|..+..+++. .++++|+++..+..+..... ..+. .+.+...+.
T Consensus 60 ~~~~l~~l~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~ 133 (232)
T 3cbg_A 60 QAQFLGLLISLT-----GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPA 133 (232)
T ss_dssp HHHHHHHHHHHH-----TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCH
T ss_pred HHHHHHHHHHhc-----CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCH
Confidence 344544444433 2348999999999999999875 48899998866654443333 2333 366676665
Q ss_pred c----cCCCCC--CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 158 I----KMPYAS--RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 158 ~----~lp~~~--~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. .++..+ ++||+|++... ..+...+++++.++|||||++++..
T Consensus 134 ~~~l~~l~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 134 LATLEQLTQGKPLPEFDLIFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp HHHHHHHHTSSSCCCEEEEEECSC----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCcCEEEECCC----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3 233334 78999998653 2334789999999999999999964
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-09 Score=105.51 Aligned_cols=122 Identities=10% Similarity=0.017 Sum_probs=72.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-----CCCCC----CceeE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-----FSTYP----RTYDL 418 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-----~~~~p----~s~D~ 418 (506)
...+|||+|||+|.++..|+... ...+|+++|.++.|++.|.++ ++...+...+.+ +..++ ++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 34589999999999988887641 125899999999999988875 331112222222 11233 58999
Q ss_pred EEEcccccccc---C---------CCCHHHHHHHHhhcccCCcEEEEEe---------------------ChhhHHHHHH
Q 010599 419 IHAHGLFSLYK---D---------KCNIEDILLEMDRILRPEGAIIIRD---------------------EVDEIIKVKK 465 (506)
Q Consensus 419 v~~~~~~~~~~---~---------~~~~~~~l~e~~RvLrPgG~~ii~d---------------------~~~~~~~~~~ 465 (506)
|.++.-+.... + ......++.++.|+|||||.+.+.+ .....+++.+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 223 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKE 223 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHH
Confidence 99985554322 0 0111245667777777777655421 1123367777
Q ss_pred HHhcCCceE
Q 010599 466 IVGGMRWDT 474 (506)
Q Consensus 466 ~~~~~~w~~ 474 (506)
++++.+++.
T Consensus 224 ~l~~~Gf~~ 232 (254)
T 2h00_A 224 ELRIQGVPK 232 (254)
T ss_dssp HHHHTTCSE
T ss_pred HHHHcCCCc
Confidence 888888863
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=98.94 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~ 155 (506)
.....++..+.... .+.+|||||||+|..+..+++. .++++|+++.++..+...+ ...+. .+.+...
T Consensus 65 ~~~~~ll~~l~~~~-----~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~i~~~~g 138 (247)
T 1sui_A 65 ADEGQFLSMLLKLI-----NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI-KKAGVDHKIDFREG 138 (247)
T ss_dssp HHHHHHHHHHHHHT-----TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH-HHTTCGGGEEEEES
T ss_pred HHHHHHHHHHHHhh-----CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEEC
Confidence 33345555554443 2358999999999999988764 4899999987765544333 33444 3667777
Q ss_pred cccc-CCC------CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 156 GTIK-MPY------ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~-lp~------~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++.. ++. ++++||+|++... ..+...+++++.++|||||++++..
T Consensus 139 da~~~l~~l~~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 139 PALPVLDEMIKDEKNHGSYDFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp CHHHHHHHHHHSGGGTTCBSEEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CHHHHHHHHHhccCCCCCEEEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7643 232 1578999998643 2345789999999999999999863
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.7e-09 Score=104.67 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH-Hc----CCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL-ER----GVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~-~~----~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
+.+|||||||+|.++..++++ .++++|+++.++..+...+.. .. ...+.+...|... ++..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 468999999999999999876 389999988766555444332 11 2457777788754 3445678999999
Q ss_pred cCccccc---CC--C--hHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPW---GA--N--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~---~~--~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.... ++ .+ . ...+++++.++|||||.|++..
T Consensus 158 d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 158 DLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 7543 43 11 0 2688999999999999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-08 Score=92.13 Aligned_cols=91 Identities=11% Similarity=-0.015 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+.+|||+|||+|.++..++.. .++++|+++.++ +.++++...+.+...|...++ ++||+|+++..+++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~-----~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-----ETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-----HHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHH-----HHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchh
Confidence 3458999999999999999876 388888876544 444443225778888888765 68999999998877
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010599 179 WGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
+.... ..+++++.++| |+ +++.
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp -----CHHHHHHHHHHE--EE-EEEE
T ss_pred ccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 64322 57899999998 55 4444
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=102.80 Aligned_cols=142 Identities=16% Similarity=0.113 Sum_probs=89.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceecccccc----CCCCCCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCEA----FSTYPRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~~----~~~~p~s~D~v~~ 421 (506)
..+|||+|||+|.++..+++.. .+.+|+++|.++.+++.|+++-- ...+...+.+ ++..+++||+|.+
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4689999999999999998752 23689999999999999987621 0112222222 2223589999998
Q ss_pred ccccccccCCCCH--HHHHHHHhhcccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec--CCCCCCCeEEEEE
Q 010599 422 HGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH--EDGPLVPEKILVA 492 (506)
Q Consensus 422 ~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~l~~ 492 (506)
+.. ....+...+ ..++.++.|+|||||.+++.... +....+.+.+++.--.+..... ..-+.....+++|
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~a 274 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCC 274 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEEe
Confidence 542 211111122 68999999999999999996432 2334444445554334433221 1111124667888
Q ss_pred Eecc
Q 010599 493 VKQY 496 (506)
Q Consensus 493 ~k~~ 496 (506)
.|++
T Consensus 275 s~~~ 278 (321)
T 2pt6_A 275 SKTD 278 (321)
T ss_dssp ESST
T ss_pred eCCC
Confidence 8864
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=103.92 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIKMPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~dl~~~~~~~a~~~-----~~~~~~~~~d~~~lp~~~~sfDlV~~~ 173 (506)
..+|||||||+|.++..++++ + ++..|+ | ..++.+++. ...+.+...|....|.+ .+|+|++.
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p-----~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~ 251 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-P-----EVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILA 251 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-H-----HHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEE
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-H-----HHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEee
Confidence 458999999999999999887 3 344444 2 233333332 23477888887665554 47999999
Q ss_pred CcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++|+|.++. ..+|+++.+.|+|||.+++..
T Consensus 252 ~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 252 RVLHDWADGKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred eecccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 9999886544 688999999999999999965
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=89.99 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-CC--C--CCeeE
Q 010599 103 VRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM-P-YA--S--RAFDM 169 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l-p-~~--~--~sfDl 169 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+.... ...+. .+.+...|+... + +. . ++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW-RQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 458999999999999999874 4899999987665544333 33343 467777776432 1 11 1 68999
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|++... ......+++++.++|+|||++++..
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 999653 2334789999999999999999864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-08 Score=98.60 Aligned_cols=103 Identities=10% Similarity=0.103 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+.+|||||||+|.++..++++ .++++|+++.++..+...+..- ....+.+...|... ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 3468999999999999999876 3899999886665444433221 12357777778654 3444678999999
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.... ++... ...+++++.++|+|||.+++...
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 6543 32221 25899999999999999999753
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.77 E-value=7.2e-09 Score=103.88 Aligned_cols=101 Identities=12% Similarity=0.156 Sum_probs=68.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCCCCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTYPRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~p~s~D~v~~ 421 (506)
.++|||+|||+|.++..|++.. ...+|+++|.++.|++.|+++- + ...+...+.+ ++..+++||+|++
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4689999999999999998752 2468999999999999998762 1 1111112222 1223589999998
Q ss_pred ccccccccCCCCH--HHHHHHHhhcccCCcEEEEEe
Q 010599 422 HGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 422 ~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d 455 (506)
+.. .+......+ ..++.++.|+|||||.+++..
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 553 221111122 579999999999999999975
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5e-08 Score=100.13 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...++ .+.+.+.|+..+++++++||+|+++..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n-~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN-ALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH-HHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 3458999999999999999875 589999998777655544 344455 578889999999988889999999765
Q ss_pred ccccCCC---h----HHHHHHHHHhcCCCeEEEEEc
Q 010599 176 LIPWGAN---D----GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~---~----~~~l~e~~rvLkPGG~li~~~ 204 (506)
+...... . ..+++++.++| ||.+++.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 4321111 1 46788999999 44444443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.1e-08 Score=93.56 Aligned_cols=109 Identities=15% Similarity=0.049 Sum_probs=78.9
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC----cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~----v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp 161 (506)
-++.+.++++ ++.+|||||||+|.++..++..+ |+++|+++..+..+..+ +...++ .+.+...|.....
T Consensus 11 RL~~i~~~v~----~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N-~~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 11 RLQKVANYVP----KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKN-VSEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHHHHHTTSC----TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHH-HHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCC----CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhhcc
Confidence 3456777773 34589999999999999999863 88999998766555444 344454 3777778876655
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+...||+|+.....-. -...++.+..+.|+++|+|+++.
T Consensus 86 ~~~~~~D~IviaGmGg~---lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 86 EEADNIDTITICGMGGR---LIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccccccCEEEEeCCchH---HHHHHHHHHHHHhCcCCEEEEEC
Confidence 55457999886554311 12567888899999999999985
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=99.71 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=85.9
Q ss_pred ceEEeecCcccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcC-cc--ceecccccc----CCCC-CCceeEEEEccc
Q 010599 354 RNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERG-LI--GIYHDWCEA----FSTY-PRTYDLIHAHGL 424 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg-~~--~~~~~~~~~----~~~~-p~s~D~v~~~~~ 424 (506)
.+|||||||+|.++..|++ .+. ..|+.+|+++.|++.|+++- +. ..+...+++ +..+ +++||+|+++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~--~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQ--SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTT--CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CEEEEEECCcCHHHHHHHHHCCC--cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence 3899999999999999987 322 37999999999999998873 21 111111222 1223 389999998643
Q ss_pred cccccC-CCCHHHHHHHHhhcccCCcEEEEEeC--h--hhH-HHHHHHHhcCCceEEEeecC--CCCCCCeEEEEEEecc
Q 010599 425 FSLYKD-KCNIEDILLEMDRILRPEGAIIIRDE--V--DEI-IKVKKIVGGMRWDTKMVDHE--DGPLVPEKILVAVKQY 496 (506)
Q Consensus 425 ~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~--~--~~~-~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~l~~~k~~ 496 (506)
...... ...-..++.++.|+|||||.+++.-. . ... ..++.+...+.-.....+.. .|......+|+|.|.-
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~p 248 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTE 248 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSC
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCC
Confidence 332111 11226799999999999999999532 1 112 22223333333222222211 2222346788888764
Q ss_pred c
Q 010599 497 W 497 (506)
Q Consensus 497 w 497 (506)
.
T Consensus 249 l 249 (317)
T 3gjy_A 249 F 249 (317)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=102.25 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=72.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+.+|||||||+|.++..++++ .++++|+++.++..+...+..- ....+.+...|... ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 3469999999999999999876 3899999887665554433321 13457777777654 4445678999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.... ++.+. ...+++++.++|+|||.|++..
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 6432 32211 2478999999999999999975
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=102.03 Aligned_cols=143 Identities=11% Similarity=0.006 Sum_probs=89.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-------c-cceecccccc----CCCCCCceeEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-------L-IGIYHDWCEA----FSTYPRTYDLI 419 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-------~-~~~~~~~~~~----~~~~p~s~D~v 419 (506)
..++|||+|||+|.++..+++.. .+.+|+++|.++.|++.|+++- + ...+...+.+ ++..+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 34689999999999999998752 2368999999999999998752 1 0111111222 22235899999
Q ss_pred EEccccccc--cCCCC--HHHHHHHHhhcccCCcEEEEEeC------hhhHHHHHHHHhcCCceEEEeec-CCCCCCCeE
Q 010599 420 HAHGLFSLY--KDKCN--IEDILLEMDRILRPEGAIIIRDE------VDEIIKVKKIVGGMRWDTKMVDH-EDGPLVPEK 488 (506)
Q Consensus 420 ~~~~~~~~~--~~~~~--~~~~l~e~~RvLrPgG~~ii~d~------~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~ 488 (506)
+++...... ..... ...++.++.|+|||||.+++... .+....+.+.+++.--.+..... .......+.
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~ 235 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFG 235 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEE
Confidence 996544320 10011 36899999999999999999531 22345555555555333332211 000012466
Q ss_pred EEEEEec
Q 010599 489 ILVAVKQ 495 (506)
Q Consensus 489 ~l~~~k~ 495 (506)
+++|.|.
T Consensus 236 ~~~as~~ 242 (314)
T 1uir_A 236 FLLASDA 242 (314)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 7888886
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-08 Score=98.73 Aligned_cols=102 Identities=12% Similarity=0.028 Sum_probs=71.9
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH--H--cCCCeEEEEecccc-CCCCCCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL--E--RGVPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~--~--~~~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+...+.. . ....+.+...|... ++..+++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 468999999999999999876 389999988766554443322 1 13457777777654 34446789999985
Q ss_pred CcccccCC-----ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 174 RCLIPWGA-----NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~-----~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. .++.. ....+++++.++|||||.|++...
T Consensus 171 ~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 171 ST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp C-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 42 22111 126899999999999999999753
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.4e-08 Score=97.49 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=72.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-------cceeccccccC----CCCCCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCEAF----STYPRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-------~~~~~~~~~~~----~~~p~s~D~v~ 420 (506)
..++|||+|||+|.++..+++.. .+.+|+++|.++.+++.|+++-- ...+...+.+. +..+++||+|.
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 35789999999999999998753 24689999999999999987621 01111112221 22368999999
Q ss_pred EccccccccCCCCH--HHHHHHHhhcccCCcEEEEEe
Q 010599 421 AHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d 455 (506)
++..... .+...+ ..++.++.|+|||||.+++..
T Consensus 157 ~d~~~~~-~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPI-GPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTT-TGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCC-CcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 9643322 111222 689999999999999999974
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=101.92 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=68.0
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
+.+|||||||+|..+..+++. .++++|+++.++..+...+... ....+.+...|... ++..+++||+|++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 458999999999999999876 4888999876554433322110 12346777777644 33356789999986
Q ss_pred CcccccCCCh----HHHHHHHHHhcCCCeEEEEEc
Q 010599 174 RCLIPWGAND----GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 174 ~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~ 204 (506)
.. .++.+.. ..+++++.++|+|||.+++..
T Consensus 189 ~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 189 SS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred CC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 53 3432221 578999999999999999975
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=101.64 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=69.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCCCCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~p~s~D~v~ 420 (506)
..++|||+|||+|.++..|++.. .+.+|+++|.++.|++.|+++- + ...+...+++ ++..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 35789999999999999998763 2468999999999999998752 1 1111112222 223358999999
Q ss_pred EccccccccCC-CCHHHHHHHHhhcccCCcEEEEEe
Q 010599 421 AHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
++......... .....++.++.|+|||||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 95443211100 012468999999999999999965
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.5e-08 Score=94.04 Aligned_cols=109 Identities=15% Similarity=0.004 Sum_probs=78.1
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC----cEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN----VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKMP 161 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~----v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~lp 161 (506)
-++.+.++++ ++.+|||||||+|.++..|+..+ ++++|+++..+..+.. .+...++. +.+...|.....
T Consensus 11 RL~~i~~~v~----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~I~v~~gD~l~~~ 85 (244)
T 3gnl_A 11 RLEKVASYIT----KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQK-QVRSSGLTEQIDVRKGNGLAVI 85 (244)
T ss_dssp HHHHHHTTCC----SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCC----CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEecchhhcc
Confidence 3456777773 34589999999999999999863 7899999876655544 34445553 677777776555
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++..||+|++....-. -...++.+..+.|+++|+|+++.
T Consensus 86 ~~~~~~D~IviagmGg~---lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 86 EKKDAIDTIVIAGMGGT---LIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CccccccEEEEeCCchH---HHHHHHHHHHHHhCCCCEEEEEc
Confidence 44446999987543311 12567888999999999999985
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=87.99 Aligned_cols=96 Identities=7% Similarity=-0.028 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
++.+|||+|||+|.++..+++. .++++|+++.++..+..+ +...+..+.+...|...++ ++||+|+++..++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIEN-LGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-TGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 4569999999999999999876 388999987655443332 2233446788888888765 48999999987755
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEE
Q 010599 179 WGAND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
..... ..+++++.++| ||.+++.
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEE
Confidence 44222 68899999998 6655544
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=100.94 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+...+... ....+.+...|... ++...++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 3469999999999999999876 4889999875554333222110 12356777777654 2323678999999
Q ss_pred cCcccccCCCh----HHHHHHHHHhcCCCeEEEEEcC
Q 010599 173 SRCLIPWGAND----GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~~----~~~l~e~~rvLkPGG~li~~~p 205 (506)
.... ++.... ..+++++.++|+|||.+++...
T Consensus 158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5432 322211 5899999999999999999854
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.4e-08 Score=100.51 Aligned_cols=116 Identities=10% Similarity=-0.015 Sum_probs=82.3
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C----CCceeEEEEcc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y----PRTYDLIHAHG 423 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~----p~s~D~v~~~~ 423 (506)
..+|||+| |+|.++..++..+. ...|+++|.++.|++.|.++ |+. .+...+.++.. + +++||+|.++.
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEECC
Confidence 46899999 99999999877531 24899999999999998876 431 22333344333 3 36999999987
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcE-EEEEeCh--hhH---HHHHHHHh-cCCceEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGA-IIIRDEV--DEI---IKVKKIVG-GMRWDTK 475 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~-~ii~d~~--~~~---~~~~~~~~-~~~w~~~ 475 (506)
.|... ....+|.++.|+|||||. +++.-.. ... ..+++++. ..++.+.
T Consensus 250 p~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 304 (373)
T 2qm3_A 250 PETLE----AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVIT 304 (373)
T ss_dssp CSSHH----HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEE
T ss_pred CCchH----HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchh
Confidence 76532 257899999999999994 3554322 233 67778777 7777653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=103.30 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=71.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-cceecccccc----CCCC-CCceeEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-IGIYHDWCEA----FSTY-PRTYDLI 419 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-~~~~~~~~~~----~~~~-p~s~D~v 419 (506)
..++|||+|||+|.++..|++.. .+.+|+++|.++.|+++|+++- + ...+...+.+ ++.. +++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 45789999999999999998752 2468999999999999998752 1 0111112222 2223 3799999
Q ss_pred EEcccccccc-CCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 420 HAHGLFSLYK-DKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~-~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+++..-.... .......++.++.|+|||||.|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9965422111 0111368999999999999999996
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.6e-08 Score=91.11 Aligned_cols=121 Identities=10% Similarity=0.101 Sum_probs=88.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc-ccCCCCC-C-ceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC-EAFSTYP-R-TYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~-~~~~~~p-~-s~D~v 419 (506)
.+..+ .+|||+|||+|.++.+|+..+ ....|+++|.++.+++.|.+. |+...+...+ ..+..++ + .||+|
T Consensus 12 ~v~~g--~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~I 88 (225)
T 3kr9_A 12 FVSQG--AILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVI 88 (225)
T ss_dssp TSCTT--EEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred hCCCC--CEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEE
Confidence 45443 579999999999999998864 356899999999999988875 3322122222 2233444 3 69988
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
...++- ...+..+|.+....|+|+|+||+.-. .-.+.+++.+...+|.+..
T Consensus 89 viaG~G-----g~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 89 TIAGMG-----GRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp EEEEEC-----HHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEE
T ss_pred EEcCCC-----hHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEE
Confidence 763321 12357799999999999999999766 4678899999999999664
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-08 Score=98.32 Aligned_cols=144 Identities=11% Similarity=0.088 Sum_probs=94.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCC----eEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-CceeEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKL----WVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLI 419 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~----~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~s~D~v 419 (506)
.....+|||+|||+|+|+..+.+... ...+++++|.++.++.+|... |+. .+-.+.+ +...+ ..||+|
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~--~~i~~~D~l~~~~~~~fD~I 205 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLANLLVDPVDVV 205 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSCCCCCCEEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC--ceEEECCCCCccccCCccEE
Confidence 34567899999999999888765311 126899999999999988774 431 1112232 33233 899999
Q ss_pred EEccccccccC--------------CCCHH-HHHHHHhhcccCCcEEEEEeC-----hhhHHHHHHHHhcCCceEEEeec
Q 010599 420 HAHGLFSLYKD--------------KCNIE-DILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 420 ~~~~~~~~~~~--------------~~~~~-~~l~e~~RvLrPgG~~ii~d~-----~~~~~~~~~~~~~~~w~~~~~~~ 479 (506)
.++--|.+... ..+.. .++.++.+.|||||++++..+ ......+++.+..-+|...++..
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~l 285 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL 285 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeC
Confidence 99877754321 01122 589999999999999998762 23457788877766675433332
Q ss_pred C----CCCCCCeEEEEEEec
Q 010599 480 E----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 480 ~----~~~~~~~~~l~~~k~ 495 (506)
. .+......+++.+|.
T Consensus 286 p~~~F~~~~~~~~i~vl~k~ 305 (344)
T 2f8l_A 286 PETLFKSEQARKSILILEKA 305 (344)
T ss_dssp CGGGSCC-CCCEEEEEEEEC
T ss_pred ChhhccCCCCceEEEEEECC
Confidence 2 222345677777774
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=99.73 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=57.6
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYA 163 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~-~~~~~~~~d~~~lp~~ 163 (506)
..++.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++..+..+.. ..+ .++.+...|+..++++
T Consensus 29 ~i~~~i~~~~~~~--~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~-~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIK--SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCL-YEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHHCCC--TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHHhcCCC--CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECchhhCCcc
Confidence 3455666666433 3459999999999999999987 48999998876655444333 233 3467777787777654
Q ss_pred CCCeeEEEEcCcc
Q 010599 164 SRAFDMAHCSRCL 176 (506)
Q Consensus 164 ~~sfDlV~~~~~l 176 (506)
+||+|+++..+
T Consensus 106 --~~D~Vv~n~py 116 (299)
T 2h1r_A 106 --KFDVCTANIPY 116 (299)
T ss_dssp --CCSEEEEECCG
T ss_pred --cCCEEEEcCCc
Confidence 79999997654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-08 Score=94.56 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
.+.+|||||||+|.++..+... .++++||++.++.-... .+...+.+..+.+.|....+.+. +||+|++.-+++++.
T Consensus 105 ~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~-~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~LE 182 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITP-FAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLLE 182 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHH-HHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHHH
T ss_pred CCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHhh
Confidence 4569999999999999987733 69999998876644443 34445788888888887777655 899999998877764
Q ss_pred CChHHHHHHHHHhcCCCeEEEE
Q 010599 181 ANDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 181 ~~~~~~l~e~~rvLkPGG~li~ 202 (506)
........++...|+++|.++-
T Consensus 183 ~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 183 REQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp HHSTTHHHHHHHHCBCSEEEEE
T ss_pred hhchhhHHHHHHHhcCCCEEEE
Confidence 4333344488899999987764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-08 Score=102.68 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=79.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccccee--ccccccCCCCCCceeEEEEcccc-
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIY--HDWCEAFSTYPRTYDLIHAHGLF- 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~--~~~~~~~~~~p~s~D~v~~~~~~- 425 (506)
..+|||+|||+|+|+.+++..+. .|+++|.|+.|++.|.+. |+...+ .+..+-++.+++.||+|+++.-.
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 46899999999999999998763 499999999999988775 332111 11111122235459999985321
Q ss_pred ccccC-----CCCHHHHHHHHhhcccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEee
Q 010599 426 SLYKD-----KCNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 426 ~~~~~-----~~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~~ 478 (506)
..... ..+...++.++.|+|||||+|++..... ..+.++..+...+.++.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~ 355 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVHR 355 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 10000 0123468899999999999999754322 33556666666666655543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=98.35 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=80.4
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC----C-CceeEEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY----P-RTYDLIH 420 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~----p-~s~D~v~ 420 (506)
..+..+|||+|||+|+++.+|++...- ..|+++|.++.+++.+.++ |+. ....+.++..+ + ++||+|.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEEE
Confidence 344568999999999999999874311 5899999999999988776 431 12223444332 3 7899999
Q ss_pred Ecc---ccccccCCCCH----------------HHHHHHHhhcccCCcEEEEEe----ChhhHHHHHHHHhcC-Cce
Q 010599 421 AHG---LFSLYKDKCNI----------------EDILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGGM-RWD 473 (506)
Q Consensus 421 ~~~---~~~~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~~-~w~ 473 (506)
++. .+..+.+..++ ..+|.++.++|||||++++.+ ..+..+.+..++... .|+
T Consensus 321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~ 397 (429)
T 1sqg_A 321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAE 397 (429)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCE
T ss_pred EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCE
Confidence 732 11211122222 368999999999999999976 223445566665543 344
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=89.98 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=88.8
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-C-ceeE
Q 010599 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-R-TYDL 418 (506)
Q Consensus 346 ~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~-s~D~ 418 (506)
..+..+ .+|||+|||+|.++.+|+..+ ....|+++|.++.+++.|.+. |+...+...+.+ +...+ + .||+
T Consensus 17 ~~v~~g--~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~ 93 (230)
T 3lec_A 17 NYVPKG--ARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDT 93 (230)
T ss_dssp TTSCTT--EEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred HhCCCC--CEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCE
Confidence 345443 679999999999999998864 356899999999999988875 332212222222 22233 3 7998
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
|...++-- ..+..+|.+..+.|+|+|+||+.-.. -.+.+++.+...+|.+..
T Consensus 94 IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp~~-~~~~lr~~L~~~Gf~i~~ 145 (230)
T 3lec_A 94 ITICGMGG-----RLIADILNNDIDKLQHVKTLVLQPNN-REDDLRKWLAANDFEIVA 145 (230)
T ss_dssp EEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHTTEEEEE
T ss_pred EEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEECCC-ChHHHHHHHHHCCCEEEE
Confidence 87533322 23567999999999999999998765 378899999999999664
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-08 Score=102.58 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~ 173 (506)
++.+|||+|||+|..+..|++. .++++|+++..+.... +.+...+. .+.+...|...++ +++++||+|++.
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK-DFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 4459999999999999998873 3889999886654443 33333455 5677777877766 555789999962
Q ss_pred -----CcccccCCCh----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 174 -----RCLIPWGAND----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 174 -----~~l~~~~~~~----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....+-.++. ..+|.++.++|||||+|++++...
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1111112221 468999999999999999987544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.3e-08 Score=99.38 Aligned_cols=99 Identities=14% Similarity=-0.043 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-CCC-CCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK-MPY-ASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~-lp~-~~~sfDlV~~~~ 174 (506)
++.+|||+| |+|.++..++.. .++++|+++.++..+..+ +...++ ++.+...|+.. +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~-~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKA-ANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 356999999 999999988764 488999988777554433 333455 57788888877 764 457899999987
Q ss_pred cccccCCChHHHHHHHHHhcCCCe-EEEEEc
Q 010599 175 CLIPWGANDGRYMIEVDRVLRPGG-YWVLSG 204 (506)
Q Consensus 175 ~l~~~~~~~~~~l~e~~rvLkPGG-~li~~~ 204 (506)
.+... . ...++.++.++||||| .++++.
T Consensus 250 p~~~~-~-~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 250 PETLE-A-IRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CSSHH-H-HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCchH-H-HHHHHHHHHHHcccCCeEEEEEE
Confidence 65332 2 4789999999999999 446654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-08 Score=100.55 Aligned_cols=123 Identities=13% Similarity=0.035 Sum_probs=79.4
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC---CC----CCCceeEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF---ST----YPRTYDLI 419 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~---~~----~p~s~D~v 419 (506)
....+|||+|||+|+++..|++.-.-...|+++|.++.+++.+.++ |+. .+...+.++ +. .+++||+|
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEE
Confidence 3456899999999999998886211124799999999999988776 331 222222222 21 15789999
Q ss_pred EEcccccccc---------------CCCCHHHHHHHHhhcccCCcEEEEEeC----hhhHHHHHHHHhc-CCceE
Q 010599 420 HAHGLFSLYK---------------DKCNIEDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGG-MRWDT 474 (506)
Q Consensus 420 ~~~~~~~~~~---------------~~~~~~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~-~~w~~ 474 (506)
.++.-++... .......+|.++.++|||||++++..- .+..+.++.+++. -.++.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~ 235 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVEL 235 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEE
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEE
Confidence 9863332110 012346799999999999999999642 2334556666543 34553
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.5e-08 Score=94.57 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=82.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC--CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP--RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p--~s~D~v~~~~~~~ 426 (506)
..+|||||||+|.|+..++..+. ..|+++|.++..++.+.+. |+-..+.-.+.+.-.++ ..||.|..+...
T Consensus 126 g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~- 202 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV- 202 (278)
T ss_dssp TCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred CCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC-
Confidence 45799999999999988877653 4799999999999877654 33222222334433333 889999874322
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeC-------hhhHHHHHHHHhcCCceEEEee
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE-------VDEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-------~~~~~~~~~~~~~~~w~~~~~~ 478 (506)
.....|.+..++|||||++++-+. ....+.++++++..++++....
T Consensus 203 ------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~ 255 (278)
T 3k6r_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence 223477788899999999988432 1246788889999999876543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-08 Score=103.07 Aligned_cols=91 Identities=11% Similarity=0.123 Sum_probs=69.0
Q ss_pred CCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
..+|||||||+|.++..++++ + ++++|+ + .+++.+.+. ..+.+...|... +++ +||+|++..++++
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P-----QVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHD 263 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H-----HHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H-----HHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccC
Confidence 458999999999999999876 3 555666 3 333333321 237777777766 665 4999999999988
Q ss_pred cCCChH--HHHHHHHHhcCC---CeEEEEEc
Q 010599 179 WGANDG--RYMIEVDRVLRP---GGYWVLSG 204 (506)
Q Consensus 179 ~~~~~~--~~l~e~~rvLkP---GG~li~~~ 204 (506)
|.+ +. .+|+++.++||| ||++++..
T Consensus 264 ~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 264 WND-EQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp SCH-HHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred CCH-HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 754 44 999999999999 99999865
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=102.34 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=71.2
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIK-MPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~----~~~~~~~~~~~d~~~-lp~~~~sfDlV~~~ 173 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+...+.. -....+.+...|... ++..+++||+|++.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 468999999999999999876 388999987655443332221 002356777777644 33345789999986
Q ss_pred CcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 174 RCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. .++... ...+++++.++|||||.+++...
T Consensus 197 ~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 197 SS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp CC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred Cc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 43 232211 16899999999999999999753
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.67 E-value=4e-09 Score=104.32 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=68.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccceeccccccCCCCC-CceeEEEEc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP-RTYDLIHAH 422 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~~~~~~~~~~~~~p-~s~D~v~~~ 422 (506)
+......+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++. +...++..+.++..++ .+||+|+++
T Consensus 24 ~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~n 100 (285)
T 1zq9_A 24 AALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVAN 100 (285)
T ss_dssp TCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEE
T ss_pred cCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEEe
Confidence 344456789999999999999999865 48999999999999988762 2122333345554444 689999996
Q ss_pred cccccc--------cCCCCHHHHH----HHH--hhcccCCcEEEE
Q 010599 423 GLFSLY--------KDKCNIEDIL----LEM--DRILRPEGAIII 453 (506)
Q Consensus 423 ~~~~~~--------~~~~~~~~~l----~e~--~RvLrPgG~~ii 453 (506)
..+... .+...+..++ +|+ .|+|||||.++.
T Consensus 101 lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~ 145 (285)
T 1zq9_A 101 LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC 145 (285)
T ss_dssp CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence 444311 1111111111 455 379999998753
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.2e-08 Score=94.98 Aligned_cols=111 Identities=10% Similarity=0.096 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEec
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLG 156 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d 156 (506)
....++..+.... .+.+|||||||+|..+..+++. .++++|+++..+..+...+ .+.+. .+.+...|
T Consensus 57 ~~~~~l~~l~~~~-----~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~gd 130 (237)
T 3c3y_A 57 LAGQLMSFVLKLV-----NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFI-RKAGVEHKINFIESD 130 (237)
T ss_dssp HHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESC
T ss_pred HHHHHHHHHHHhh-----CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcC
Confidence 3344555554443 2358999999999999998764 4899999886665444333 33444 36677777
Q ss_pred cccC-C-C-----CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 157 TIKM-P-Y-----ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 157 ~~~l-p-~-----~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... + + +.++||+|++... ..+...+++++.++|||||++++..
T Consensus 131 a~~~l~~l~~~~~~~~~fD~I~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 131 AMLALDNLLQGQESEGSYDFGFVDAD----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp HHHHHHHHHHSTTCTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHhccCCCCCcCEEEECCc----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 6432 2 2 2578999998642 2334789999999999999999864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.2e-08 Score=100.40 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEecccc-CCC---CCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK-MPY---ASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~-lp~---~~~sfDlV~ 171 (506)
.+.+|||+|||+|.++..++.. .|+++|+++.++..+.. .+...++ .+.+...|+.. ++. ...+||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~-N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLA-HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHH-HHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 3458999999999999999985 48999999987765554 4444554 57788888754 221 245899999
Q ss_pred EcCccc----ccCCCh----HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 172 CSRCLI----PWGAND----GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~~~~l~----~~~~~~----~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..... ....+. ..++.++.++|+|||+++++..+.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 964331 111222 346788899999999999987654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-08 Score=97.63 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=73.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~lp 161 (506)
...++.+.+.+... ++.+|||||||+|.++..|++. .++++|+++.++..+.... ...+ ..+.+...|+..++
T Consensus 14 ~~i~~~i~~~~~~~--~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 14 PLIINSIIDKAALR--PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGDVLKTD 90 (285)
T ss_dssp HHHHHHHHHHTCCC--TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhcCCC--CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcceeccc
Confidence 44556677777543 4459999999999999999886 4889999886664443322 2222 24678888888777
Q ss_pred CCCCCeeEEEEcCcccccCCCh-HHHH--------------HHH--HHhcCCCeEEE
Q 010599 162 YASRAFDMAHCSRCLIPWGAND-GRYM--------------IEV--DRVLRPGGYWV 201 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~-~~~l--------------~e~--~rvLkPGG~li 201 (506)
++ +||+|+++..+ ++.... ..++ +|+ .++|+|||.++
T Consensus 91 ~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 91 LP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 65 79999997654 332211 1222 233 36899999864
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=91.15 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=88.2
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc-cCCCCC-C-ceeE
Q 010599 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE-AFSTYP-R-TYDL 418 (506)
Q Consensus 346 ~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~-~~~~~p-~-s~D~ 418 (506)
..+..+ .+|||||||+|.++.+|+..+ ....|+++|.++.+++.|.+. |+...+...+. .+..++ + .||+
T Consensus 17 ~~v~~g--~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~ 93 (244)
T 3gnl_A 17 SYITKN--ERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDT 93 (244)
T ss_dssp TTCCSS--EEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred HhCCCC--CEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccE
Confidence 355544 679999999999999998864 356899999999999998876 44221222222 222333 4 5999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
|...++-- ..+..+|.+..+.|+|+|+||+.-.. -.+.+++.+...+|.+.
T Consensus 94 IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 94 IVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp EEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHHTEEEE
T ss_pred EEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHHCCCEEE
Confidence 87632221 23567999999999999999998754 46789999999999964
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=90.26 Aligned_cols=108 Identities=15% Similarity=0.040 Sum_probs=75.6
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc-cCC
Q 010599 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-KMP 161 (506)
Q Consensus 89 ~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~-~lp 161 (506)
++.+.++++ ++.+|||||||+|.++..++.. .|+++|+++..+..+. +.+...++. +.+...|.. .++
T Consensus 6 L~~l~~~v~----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~i~~~~~d~l~~l~ 80 (225)
T 3kr9_A 6 LELVASFVS----QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV-KNVEAHGLKEKIQVRLANGLAAFE 80 (225)
T ss_dssp HHHHHTTSC----TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCC----CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECchhhhcc
Confidence 455666663 3458999999999999999986 3889999987665444 444445553 667777763 443
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ...||+|+.....-. -...++.+....|+|+|+|+++..
T Consensus 81 ~-~~~~D~IviaG~Gg~---~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 81 E-TDQVSVITIAGMGGR---LIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp G-GGCCCEEEEEEECHH---HHHHHHHHTGGGCTTCCEEEEEES
T ss_pred c-CcCCCEEEEcCCChH---HHHHHHHHHHHHhCCCCEEEEECC
Confidence 2 226999987553211 125788999999999999999743
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-08 Score=102.52 Aligned_cols=123 Identities=12% Similarity=0.091 Sum_probs=82.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc-cceeccccccCCCC-------CCceeEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTY-------PRTYDLIH 420 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~-~~~~~~~~~~~~~~-------p~s~D~v~ 420 (506)
..+|||+|||+|+|+..++..+ ...|+++|.++.+++.|.+. |+ ...+...+.++..+ +.+||+|+
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999999875 24899999999999988765 33 21222223332211 36899999
Q ss_pred Ecccccc-----c-cCCCCHHHHHHHHhhcccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEe
Q 010599 421 AHGLFSL-----Y-KDKCNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 421 ~~~~~~~-----~-~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~ 477 (506)
++--... . ........++.++.++|||||.+++..... ..+.+++.+...+.+...+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9532210 0 011356689999999999999999965432 3445555666666554443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-08 Score=101.53 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=82.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C---CCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~---p~s~D~v~ 420 (506)
...+|||+|||+|+++..++.. ..+|+++|.++.+++.|.+. |+.. +...+.++.. + +.+||+|+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii 284 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVV 284 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEE
Confidence 4568999999999999999885 47899999999999988775 3311 2222222211 1 46999999
Q ss_pred EccccccccCC------CCHHHHHHHHhhcccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEe
Q 010599 421 AHGLFSLYKDK------CNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 421 ~~~~~~~~~~~------~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~ 477 (506)
++--....... .....++.++.++|||||.+++..... ..+.+++.+...+.+..++
T Consensus 285 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 285 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 84321100000 123568999999999999999975432 3455566667776655544
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-09 Score=113.61 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=71.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccC--CCCCCceeEEEEccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAF--STYPRTYDLIHAHGL 424 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~--~~~p~s~D~v~~~~~ 424 (506)
-+|||||||.|.++..|+..| .+|+++|.++.++++|+.+ |.. .+...+ |++ +..+++||+|.|..+
T Consensus 68 ~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 68 LNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 479999999999999999987 5899999999999988764 321 122222 333 123589999999999
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|..+...+ ..+.++.+.|+++|..++-.
T Consensus 144 ~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 144 FHHIVHLHGI-DEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHSSEEEEE
T ss_pred hhcCCCHHHH-HHHHHHHHHhccccceeeEE
Confidence 9977643332 23556788899999877743
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=97.33 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=72.5
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCeeEEEEcCccccc
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-PYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l-p~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||+|||+|.++..++..+ |+++|+|+.++..+..+ +..+++...+.+.|+... +...+.||+|++.......
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n-~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQA-ALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 5699999999999999998864 88999998777555444 344566656667776543 2223349999996532111
Q ss_pred C--------CChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 180 G--------ANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 180 ~--------~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
. .+...++..+.++|||||+|++++..
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 0 11247889999999999999976543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.8e-08 Score=100.14 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcC-
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSR- 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~- 174 (506)
++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...+..+.+...|...++ +++++||+|++..
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 324 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence 4559999999999999999874 4899999998775544 344445667778888887765 5667899999632
Q ss_pred -----cccccCCCh----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 175 -----CLIPWGAND----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 -----~l~~~~~~~----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.+ .++. ..++.++.++|||||++++++...
T Consensus 325 csg~g~~~~-~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 325 CSATGVIRR-HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCGGGTTT-CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCcccccCC-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1111 1221 377999999999999999987433
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.3e-08 Score=95.09 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=79.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
+.+.+.+.+.+ +...+|||||||.|-++..++.. .+.++|+++.++.-.. .++...+++..+.+.|...-+
T Consensus 120 D~fY~~i~~~i----~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~~~~ 194 (281)
T 3lcv_B 120 DEFYRELFRHL----PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLLEDR 194 (281)
T ss_dssp HHHHHHHGGGS----CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTTTSC
T ss_pred HHHHHHHHhcc----CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeecccC
Confidence 34444555555 22459999999999999888665 5899999887664443 333445788788777765444
Q ss_pred CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEE
Q 010599 162 YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~ 202 (506)
+.+.||+|++.-+++++.+.. ...+ ++...|+|+|.++-
T Consensus 195 -p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 195 -LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp -CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred -CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 467899999999987764433 3455 99999999998874
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-08 Score=99.41 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=70.1
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH-----------cCCCeEEEEecccc-CCCCCCCe
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE-----------RGVPAVIGVLGTIK-MPYASRAF 167 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~-----------~~~~~~~~~~d~~~-lp~~~~sf 167 (506)
+.+|||||||+|.++..+++. .++++|+++.++..+...+ .. ....+.+...|... ++. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 458999999999999999876 4889999886665444333 10 12346777777643 222 5789
Q ss_pred eEEEEcCcccccCC--C--hHHHHHHHHHhcCCCeEEEEEc
Q 010599 168 DMAHCSRCLIPWGA--N--DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 168 DlV~~~~~l~~~~~--~--~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+|++.... ++.. . ...+++++.++|+|||.+++..
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999986542 3221 1 2678999999999999999974
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=100.26 Aligned_cols=124 Identities=10% Similarity=0.119 Sum_probs=80.9
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CC-CceeEEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YP-RTYDLIH 420 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p-~s~D~v~ 420 (506)
.....+|||+|||+|+.+..|++.-.-...|+++|.++.+++.+.++ |+. .+...+.++.. ++ ++||+|.
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl 335 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADKVL 335 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCEEE
Confidence 34456899999999999999987311114799999999999988776 441 12222333322 34 7899999
Q ss_pred Ecc---ccccccCCCCH----------------HHHHHHHhhcccCCcEEEEEeC----hhhHHHHHHHHhcC-CceE
Q 010599 421 AHG---LFSLYKDKCNI----------------EDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 421 ~~~---~~~~~~~~~~~----------------~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~-~w~~ 474 (506)
++. .+..+.+..++ ..+|.++.++|||||.+++.+- .+..+.++.+++.. .|+.
T Consensus 336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~ 413 (450)
T 2yxl_A 336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKL 413 (450)
T ss_dssp EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEE
T ss_pred EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 631 11111122222 4689999999999999998653 22345667766654 4653
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=93.25 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=85.0
Q ss_pred eEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC
Q 010599 71 VFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG 147 (506)
Q Consensus 71 ~~~f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~ 147 (506)
.|.+.-...+|..+...--.++.+.+ .++.+|||+|||+|.++..++.+ .|+++|+++..+. .+.+.+..++
T Consensus 98 ~~~~D~~k~~f~~~~~~er~ri~~~~----~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~-~~~~N~~~N~ 172 (278)
T 3k6r_A 98 KYKLDVAKIMFSPANVKERVRMAKVA----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFK-FLVENIHLNK 172 (278)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHC----CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHH-HHHHHHHHTT
T ss_pred EEEEeccceEEcCCcHHHHHHHHHhc----CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHH-HHHHHHHHcC
Confidence 44444444556555544445677776 24569999999999999988865 3889999886553 3444555555
Q ss_pred CC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 148 VP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 148 ~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+. +.+...|...++ ..+.||.|+++.. .....++..+.++|||||.+.+.
T Consensus 173 v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 173 VEDRMSAYNMDNRDFP-GENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp CTTTEEEECSCTTTCC-CCSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCCcEEEEeCcHHHhc-cccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEE
Confidence 54 566677777665 3568999998642 22356889999999999998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=8.6e-08 Score=98.36 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=82.3
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc---cCCCCCCceeEEEEc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE---AFSTYPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~---~~~~~p~s~D~v~~~ 422 (506)
+....+|||+|||+|+++..++..+.+ ..|+++|.++.|++.|.++ |+...+...+. .++..+++||+|.++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence 445678999999999999999886521 2799999999999988876 33122222223 333334899999997
Q ss_pred ccccccc-CCCCH----HHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010599 423 GLFSLYK-DKCNI----EDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 423 ~~~~~~~-~~~~~----~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
--|..-. ....+ ..++.++.|+| +|+.++|.... +.+++.+.+.+|++..
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~---~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEK---KAIEEAIAENGFEIIH 348 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCH---HHHHHHHHHTTEEEEE
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCH---HHHHHHHHHcCCEEEE
Confidence 6665321 11122 56889999999 55555555543 4566788889998653
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-08 Score=102.77 Aligned_cols=124 Identities=12% Similarity=0.173 Sum_probs=80.4
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIHA 421 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~D~v~~ 421 (506)
.....+|||+|||+|+.+.+|++.-.....|+++|.++.+++.+.++ |+. +...+.+ ++ ..+++||+|.+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEEE
Confidence 33456899999999999999886311124799999999999988775 432 2222232 22 24589999996
Q ss_pred c------cccccccC------CCCH-------HHHHHHHhhcccCCcEEEEEeC----hhhHHHHHHHHhcC-CceEE
Q 010599 422 H------GLFSLYKD------KCNI-------EDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGM-RWDTK 475 (506)
Q Consensus 422 ~------~~~~~~~~------~~~~-------~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~-~w~~~ 475 (506)
+ ++|..-.. ..++ ..+|.++.++|||||+|+++.- .+-.+.++.+++.. .|++.
T Consensus 177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~ 254 (464)
T 3m6w_A 177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLE 254 (464)
T ss_dssp ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEE
T ss_pred CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEE
Confidence 2 22221110 0111 5699999999999999998542 23455666666665 45543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-08 Score=96.65 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=67.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHH----HcCCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~----~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
.+.+|||||||+|.++..+++. .++++|+++.++..+...+.. -....+.+...|..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 3469999999999999988875 478888877544333221110 11234677777776554 7899999862
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.++..+++++.++|||||.+++..
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 235569999999999999999864
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=8.3e-08 Score=99.63 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=87.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC--CCceeEEEEccccccccC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~--p~s~D~v~~~~~~~~~~~ 430 (506)
..+|||+|||+|.|+.+++++-....+++++|.++.+++.| .+ + .. .+.++..+ +..||+|.++--|.....
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~-~-~~---~~~D~~~~~~~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PW-A-EG---ILADFLLWEPGEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TT-E-EE---EESCGGGCCCSSCEEEEEECCCCCCBSC
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CC-C-cE---EeCChhhcCccCCCCEEEECcCccCccc
Confidence 45899999999999999886310125899999999999877 22 1 11 12333222 279999999643332111
Q ss_pred -------------------------CCC-HHHHHHHHhhcccCCcEEEEEeChh-----hHHHHHHHHhcCCceEEEeec
Q 010599 431 -------------------------KCN-IEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 431 -------------------------~~~-~~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~~~~~~w~~~~~~~ 479 (506)
..+ ...+|..+.++|||||.+++.-+.. ....+++.+...++ ..++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~-~~i~~l 192 (421)
T 2ih2_A 114 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK-TSVYYL 192 (421)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE-EEEEEE
T ss_pred ccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC-eEEEEC
Confidence 011 1256889999999999998865443 45778888776666 333221
Q ss_pred C---CCCCCCeEEEEEEec
Q 010599 480 E---DGPLVPEKILVAVKQ 495 (506)
Q Consensus 480 ~---~~~~~~~~~l~~~k~ 495 (506)
. .+....-.+++.+|.
T Consensus 193 ~~~F~~~~~~~~il~~~k~ 211 (421)
T 2ih2_A 193 GEVFPQKKVSAVVIRFQKS 211 (421)
T ss_dssp ESCSTTCCCCEEEEEEESS
T ss_pred CCCCCCCCccEEEEEEEeC
Confidence 1 333345677777773
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.7e-08 Score=106.50 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=76.5
Q ss_pred CCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC---eEEEEecccc-CCCCCCCeeEEEEcCc
Q 010599 103 VRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP---AVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~---~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
+.+|||+|||+|.++..++.. .|+++|+|+.++..+..+.. .+++. +.+.+.|... ++...++||+|++...
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~-~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLR-LNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 458999999999999998876 38999999877765554443 44543 7788888765 4445678999999653
Q ss_pred cc----------ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 176 LI----------PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 l~----------~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. ....+...++.++.++|+|||+|+++....
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 21 111122567999999999999999987654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=96.84 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc-
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK- 159 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~- 159 (506)
..+.+++.+.+.+... .+.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...+. ++.+...|...
T Consensus 270 ~~e~l~~~~~~~l~~~--~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~f~~~d~~~~ 346 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQ--PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEED 346 (433)
T ss_dssp HHHHHHHHHHHHHTCC--TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTSC
T ss_pred HHHHHHHHHHHhhcCC--CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEECCHHHH
Confidence 3466777777777433 3458999999999999999986 58999999877755543 3444454 57788888765
Q ss_pred ---CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 160 ---MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 ---lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++++++||+|++...... ...+++.+. .++|++.++++..+.
T Consensus 347 l~~~~~~~~~fD~Vv~dPPr~g----~~~~~~~l~-~~~p~~ivyvsc~p~ 392 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLLDPARAG----AAGVMQQII-KLEPIRIVYVSCNPA 392 (433)
T ss_dssp CSSSGGGTTCCSEEEECCCTTC----CHHHHHHHH-HHCCSEEEEEESCHH
T ss_pred hhhhhhhcCCCCEEEECCCCcc----HHHHHHHHH-hcCCCeEEEEECChH
Confidence 4456778999999653321 134555544 479999999986543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=94.86 Aligned_cols=94 Identities=7% Similarity=-0.011 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
.+.+|||+|||+|.++.. +.. .++++|+++..+..+.. .+...++ .+.+...|..... ++||+|++....
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~-n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~- 268 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKK-NIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK- 268 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT-
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH-
Confidence 345999999999999999 764 48999999876654443 3444454 4788888887765 789999996421
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
....++.++.++|+|||.+++...
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 124789999999999999998753
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.9e-08 Score=102.18 Aligned_cols=105 Identities=15% Similarity=0.227 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCC-CCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPY-ASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~-~~~sfDlV~~~~ 174 (506)
++.+|||+|||+|..+..|++. .|+++|+++..+.....+. ...++ .+.+...|...++. .+++||+|++.-
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~-~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANI-SRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHH-HHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 4569999999999999998874 3899999887665444333 33344 46677777766653 457899999721
Q ss_pred ------cccc-------cCCC--------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 175 ------CLIP-------WGAN--------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ------~l~~-------~~~~--------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++.+ |..+ ...+|.++.++|||||+|++++...
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 1111 1100 1368999999999999999986533
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.3e-08 Score=99.31 Aligned_cols=119 Identities=14% Similarity=0.061 Sum_probs=80.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccccCCC----C---CCceeEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~~~~----~---p~s~D~v~ 420 (506)
..+|||+|||+|+|+..++..+. ..|+++|.++.|++.|.+. |+.. .+...+.++.. . ..+||+|.
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 46899999999999999998652 4799999999999988765 3321 22233333211 1 25899999
Q ss_pred Eccccccc--cCCC----CHHHHHHHHhhcccCCcEEEEEeChh------hHHHHHHHHhcCCce
Q 010599 421 AHGLFSLY--KDKC----NIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWD 473 (506)
Q Consensus 421 ~~~~~~~~--~~~~----~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~ 473 (506)
++.-.... .... ....++.++.++|+|||.|++..... ..+.++..+...+++
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 85332100 0111 23357788899999999999975432 445566677888887
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-08 Score=103.28 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP-YASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp-~~~~sfDlV~~~~~ 175 (506)
++.+|||+|||+|..+..|++. .|+++|+++.++..+.. .+...++.+.+...|...++ +.+++||+|++...
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~-n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE-NVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCeEEEEECCHHHhhhhccccCCEEEECCC
Confidence 4569999999999999999854 38999998876654443 34444555677777776665 34678999995211
Q ss_pred ----c-cccCCCh----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 176 ----L-IPWGAND----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 ----l-~~~~~~~----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
- ..-.++. ..+|.++.++|||||+|++++...
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 0 0101111 568999999999999999986543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=97.74 Aligned_cols=105 Identities=10% Similarity=-0.042 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccCCC----CCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKMPY----ASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~lp~----~~~sfDlV~ 171 (506)
.+.+|||+|||+|.++..++.. .|+++|+++..+..+.. .+...++ .+.+...|+..... ..++||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 3458999999999999999986 38999999876654443 4444555 57788888754421 146899999
Q ss_pred EcCcccc--------cCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 172 CSRCLIP--------WGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~~~~l~~--------~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+...... .......++.++.++|+|||+++++..+.
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9643211 11223678999999999999999987554
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-08 Score=103.39 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=77.1
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----CCCceeEEEEc-
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----YPRTYDLIHAH- 422 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~p~s~D~v~~~- 422 (506)
...+|||||||+|+.+.+|++.-.....|+++|.++.+++.+.++ |+. .+...+.+... .+++||+|.++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence 456899999999999998887311124799999999999988776 431 12222333332 35799999983
Q ss_pred -----cccccccC----CC--C-------HHHHHHHHhhcccCCcEEEEEeC----hhhHHHHHHHHhcCC
Q 010599 423 -----GLFSLYKD----KC--N-------IEDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGMR 471 (506)
Q Consensus 423 -----~~~~~~~~----~~--~-------~~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~~ 471 (506)
++|..-.. +. + -..+|.++.|+|||||+|+++.- .+-.+.++.+++...
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 23321111 00 0 13689999999999999999642 223344555555443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-08 Score=101.40 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCC----CCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPY----ASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~----~~~sfDlV~~~~ 174 (506)
.+.+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+.. +.+...|+..... ..++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n-~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEEN-ARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 3458999999999999999875 589999998766554433 3444444 6777777754421 256899999964
Q ss_pred cccccC--------CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 175 CLIPWG--------ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l~~~~--------~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
...... .....++.++.++|+|||+|++++...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 321111 112568899999999999999987654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.3e-08 Score=97.92 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=76.0
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCCceeEEEEccccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~ 428 (506)
..+|||+|||+|.|+.. +.. ...|+++|.++.+++.|.+. |+...+...+.+...+.++||+|+++.-.
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~--- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK--- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT---
T ss_pred CCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH---
Confidence 46899999999999998 763 36899999999999988765 33122233334433334899999984211
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcC-CceE
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM-RWDT 474 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~-~w~~ 474 (506)
....++.++.++|+|||.+++.+.....+.+.+.+... ++++
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~~~~~~i 311 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCEV 311 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHHHSEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHHhcCCcE
Confidence 12368999999999999999965433234444444444 5654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=98.59 Aligned_cols=125 Identities=10% Similarity=0.004 Sum_probs=83.6
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C---CCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y---PRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~---p~s~D~v~ 420 (506)
...+|||+|||+|+|+..++..+ ...|+++|.++.+++.|.+. |+...+...+.++.. + +.+||+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 34689999999999999999874 24899999999999988765 321122222232211 1 46899999
Q ss_pred Ecccccccc------CCCCHHHHHHHHhhcccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEee
Q 010599 421 AHGLFSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~~~~~~~------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~~ 478 (506)
++--..... .......++.++.++|||||.+++..... ..+.+.+.+...+.++.++.
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 943211000 00234578999999999999999875432 34455566777777766655
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.54 E-value=6.9e-08 Score=99.82 Aligned_cols=105 Identities=15% Similarity=0.015 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC----CCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY----ASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~----~~~sfDlV~~ 172 (506)
.+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...++ .+.+...|+..+.. ..++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~-n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 3459999999999999999976 48999999877655443 3444555 47788788754421 2568999999
Q ss_pred cCcccccC--------CChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 173 SRCLIPWG--------ANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~--------~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
........ .+...++.++.++|+|||++++++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 64331111 223578899999999999999887544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=96.63 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 010599 85 ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPY 162 (506)
Q Consensus 85 ~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~ 162 (506)
.+.+.+.+.+ + ..+.+|||+|||+|.++..|++. .|+++|+++.++..+..+ +...++.+.+...|+..+..
T Consensus 278 ~e~l~~~~~~-~----~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n-~~~ngl~v~~~~~d~~~~~~ 351 (425)
T 2jjq_A 278 AVNLVRKVSE-L----VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRN-VEINNVDAEFEVASDREVSV 351 (425)
T ss_dssp HHHHHHHHHH-H----CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCEEEEECCTTTCCC
T ss_pred HHHHHHHhhc-c----CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChHHcCc
Confidence 3455555555 2 23458999999999999999987 489999998777555543 34445557788888877643
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
. +||+|++.... ......+++.+ +.|+|||.++++..+.
T Consensus 352 -~-~fD~Vv~dPPr---~g~~~~~~~~l-~~l~p~givyvsc~p~ 390 (425)
T 2jjq_A 352 -K-GFDTVIVDPPR---AGLHPRLVKRL-NREKPGVIVYVSCNPE 390 (425)
T ss_dssp -T-TCSEEEECCCT---TCSCHHHHHHH-HHHCCSEEEEEESCHH
T ss_pred -c-CCCEEEEcCCc---cchHHHHHHHH-HhcCCCcEEEEECChH
Confidence 2 89999996532 11123455555 4599999999987543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=95.51 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~ 172 (506)
.+.+|||+|||+|.++..+++. .+.++|+++..+..+..+... .+....+...|... +.+.+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~-~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-QRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh-CCCCceEEECCCCC-ccccCCccEEEE
Confidence 3458999999999998877643 378899988666555444332 35567777777654 334578999999
Q ss_pred cCcccccCCCh-----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 173 SRCLIPWGAND-----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~~~~-----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..+.++..+. ..++.++.+.|||||++++..|..
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 97764432111 158999999999999999987644
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-07 Score=96.74 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=80.3
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhh-----------------CCcEEEecCccchHHHHHHHHHHcCC-
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWS-----------------RNVIAMSFAPRDSHEAQVQFALERGV- 148 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----------------~~v~~vdis~~dl~~~~~~~a~~~~~- 148 (506)
..++.+.+++.. ..+.+|||.|||+|.++..+++ ..+.++|+++..+..+..+... .+.
T Consensus 158 ~v~~~mv~~l~~--~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l-~g~~ 234 (445)
T 2okc_A 158 PLIQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGIG 234 (445)
T ss_dssp HHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHhCC--CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH-hCCC
Confidence 344556666632 3345899999999998877654 3589999988666555444433 344
Q ss_pred --CeEEEEeccccCCCCCCCeeEEEEcCcccccCCC----------------hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 149 --PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN----------------DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 149 --~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~----------------~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...+...|+...+.. .+||+|+++..+.+.... ...+++.+.+.|||||++++..|.
T Consensus 235 ~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 235 TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 456677777665543 389999998766442111 137899999999999999998763
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-07 Score=95.85 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=78.4
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
....+.+.+.+.. ..+.+|||+|||+|.++..++++ .++++|+++..+..+ ..+.+...|....
T Consensus 25 ~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~ 93 (421)
T 2ih2_A 25 PEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLW 93 (421)
T ss_dssp HHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGC
T ss_pred HHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhc
Confidence 4455667777743 23449999999999999999863 589999998765322 3466777787665
Q ss_pred CCCCCCeeEEEEcCcccccCC---------Ch-------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 161 PYASRAFDMAHCSRCLIPWGA---------ND-------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~---------~~-------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +.++||+|+++..+..... +. ..+++.+.++|+|||++++..|..
T Consensus 94 ~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 94 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred C-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 4 3468999999754432111 11 256889999999999999987653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=99.40 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=80.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc---CC-CCCCceeEEEE
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA---FS-TYPRTYDLIHA 421 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~---~~-~~p~s~D~v~~ 421 (506)
.....+|||||||+|+.+.+|++.-.-...|+++|.++.+++.+.++ |+. .+...+.+ ++ .++++||+|.+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDRIVV 181 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCEEEE
Confidence 34456899999999999888876310114799999999999988765 431 12222222 22 24589999997
Q ss_pred ccccc---cccCCCC---------H-------HHHHHHHhhcccCCcEEEEEeC----hhhHHHHHHHHhcCCceEE
Q 010599 422 HGLFS---LYKDKCN---------I-------EDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 422 ~~~~~---~~~~~~~---------~-------~~~l~e~~RvLrPgG~~ii~d~----~~~~~~~~~~~~~~~w~~~ 475 (506)
+.--+ ......+ + ..+|.++.++|||||+|+.+.- .+-.+.++.+++...+++.
T Consensus 182 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~ 258 (456)
T 3m4x_A 182 DAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIE 258 (456)
T ss_dssp ECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred CCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEE
Confidence 43211 1111111 1 1689999999999999998542 2345667777777765543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=98.68 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMP-YASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlV~~~~ 174 (506)
++.+|||+|||+|..+..|++. .|+++|+++..+.....+ +...++. +.+...|...++ ..+++||+|++..
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n-~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSEN-IERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH-HHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 4559999999999999888864 388999988766444433 3334544 566666766554 2357899999742
Q ss_pred cc---cccCCCh------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 175 CL---IPWGAND------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 175 ~l---~~~~~~~------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.. -.+..++ ..+|.++.++|||||+|++++...
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 10 0011111 267999999999999999986543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.44 E-value=8.7e-09 Score=99.41 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=72.8
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC-
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS- 164 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~- 164 (506)
..+.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++..+..... ....+.+...|...++++.
T Consensus 17 ~~~~i~~~~~~~--~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLK--ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCC--SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCC--CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccC
Confidence 345566666443 3458999999999999999876 48899998876643322211 1234677778888888774
Q ss_pred CCeeEEEEcCccc-----------ccCCChHHHH----HHHHHhcCCCeEEEEEc
Q 010599 165 RAFDMAHCSRCLI-----------PWGANDGRYM----IEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~-----------~~~~~~~~~l----~e~~rvLkPGG~li~~~ 204 (506)
++| .|+++..+. | .......+ +.+.|+|+|||.+.+..
T Consensus 93 ~~f-~vv~n~Py~~~~~~~~~~~~~-~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 93 QRY-KIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SEE-EEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCc-EEEEeCCccccHHHHHHHHhC-CCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 677764321 1 11222333 66888999998877654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.6e-09 Score=101.37 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=67.1
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCC----CceeEEEEc
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYP----RTYDLIHAH 422 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p----~s~D~v~~~ 422 (506)
+......+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++. ....+...+.++..++ ++| .|.++
T Consensus 25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n 100 (245)
T 1yub_A 25 LNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGN 100 (245)
T ss_dssp CCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEE
T ss_pred cCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEe
Confidence 344456789999999999999998865 58999999999999887653 1122223334444333 578 56664
Q ss_pred ccccc--------ccCCCCHHHHH----HHHhhcccCCcEEEEEe
Q 010599 423 GLFSL--------YKDKCNIEDIL----LEMDRILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~--------~~~~~~~~~~l----~e~~RvLrPgG~~ii~d 455 (506)
.-+.. ..|......++ .++.|+|||||.+.+..
T Consensus 101 ~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 101 IPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 22210 01111222344 66999999999877643
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.1e-07 Score=89.43 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=67.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYA 163 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~ 163 (506)
...++.|.+.+... ++.+|||||||+|.++..|+++ .|+++|+++.++..+..... ...++.+..+|+..++++
T Consensus 36 ~~i~~~Iv~~l~~~--~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLT--KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCC--CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcc
Confidence 44566777777543 3459999999999999999886 58999999987765554443 234678888999988888
Q ss_pred CCCeeEEEEcCcc
Q 010599 164 SRAFDMAHCSRCL 176 (506)
Q Consensus 164 ~~sfDlV~~~~~l 176 (506)
+.+||.|+++..+
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 8889999988654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-07 Score=91.61 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEcc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHG 423 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~v~~~~ 423 (506)
......+|||+|||+|.++..|++.+ .+|+++|.++.|++.+.++ ++ ..+...+.++..++ .+||+|.++.
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~D~Vv~n~ 114 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVFPKFDVCTANI 114 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCCCCCSEEEEEC
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCcccCCEEEEcC
Confidence 33445689999999999999999875 4899999999999988875 22 23333445555555 7999999965
Q ss_pred ccccccCCCCHHHHH---------------HHHhhcccCCcE
Q 010599 424 LFSLYKDKCNIEDIL---------------LEMDRILRPEGA 450 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l---------------~e~~RvLrPgG~ 450 (506)
.+.... ..+..+| .+..|+++|+|.
T Consensus 115 py~~~~--~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 115 PYKISS--PLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp CGGGHH--HHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred Cccccc--HHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 443111 0112333 346788988884
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-06 Score=89.20 Aligned_cols=120 Identities=12% Similarity=0.160 Sum_probs=80.5
Q ss_pred hhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC----C---CC
Q 010599 346 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST----Y---PR 414 (506)
Q Consensus 346 ~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~----~---p~ 414 (506)
..+......+|||+|||+|.++..|++.. ..|+++|.++.|++.|.++ |+ ..+...+.++.. . ++
T Consensus 280 ~~l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-~~v~f~~~d~~~~l~~~~~~~~ 355 (433)
T 1uwv_A 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKN 355 (433)
T ss_dssp HHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSGGGTT
T ss_pred HhhcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEECCHHHHhhhhhhhcC
Confidence 33333445689999999999999999873 5899999999999988765 22 122222233222 1 26
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEE
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
+||+|.++- ++.....++..+. -++|++.++++.....+..--.++...+|++..
T Consensus 356 ~fD~Vv~dP------Pr~g~~~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 356 GFDKVLLDP------ARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp CCSEEEECC------CTTCCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEECC------CCccHHHHHHHHH-hcCCCeEEEEECChHHHHhhHHHHHHCCcEEEE
Confidence 899999831 2333445555554 389999999998876554444455666888654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 506 | ||||
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 4e-06 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 6e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 1e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 5e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.001 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.002 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.003 |
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (107), Expect = 4e-06
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 7/151 (4%)
Query: 96 IPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALER--GVPAVIG 153
PIK G + L G + +++ + ++ + ++
Sbjct: 69 FPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP 126
Query: 154 VLGTIKMPYASR-AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS--GPPINWK 210
+LG P R + + + L+ GGY +++ I+
Sbjct: 127 ILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT 186
Query: 211 TNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241
+ R E E ++ E NL +EK
Sbjct: 187 KEPEQVFREVERELSEYFEVIERLNLEPYEK 217
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 43.5 bits (102), Expect = 2e-05
Identities = 18/154 (11%), Positives = 46/154 (29%), Gaps = 19/154 (12%)
Query: 98 IKNGTVRTALDTGCGVASWGAYL-----WSRNVIAMSFAPRDSHEAQVQFALERGVPAVI 152
++ G L+ G G + +Y+ + + + +A + + V
Sbjct: 83 LRPG--MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR 140
Query: 153 GVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTN 212
I + + + A + PW ++ ++ +++PG P +
Sbjct: 141 TSRSDIADFISDQMY-DAVIADIPDPW-----NHVQKIASMMKPGSVATFYLPNFDQ--- 191
Query: 213 YKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKG 246
++ L E L+ +G
Sbjct: 192 ---SEKTVLSLSASGMHHLETVELMKRRILVREG 222
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.4 bits (98), Expect = 6e-05
Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 6/146 (4%)
Query: 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALER 146
+++++ + R LD CG L R + + + +
Sbjct: 28 DFVEEIFKEDAKREV--RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 147 GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP--WGANDGRYMIEVDRVLRPGGYWVLSG 204
+ + G + FD I + + +V L+PGG ++
Sbjct: 86 RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
Query: 205 PPINWKTNYKAWQRPKEELQEEQRKI 230
P W + E + E++ +
Sbjct: 146 P--CWFYGGRDGPVVWNEQKGEEKLV 169
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 1/128 (0%)
Query: 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLAD 386
Y+ + K ++ ++I + R ++D+ G G + V+ +
Sbjct: 16 YRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEM 75
Query: 387 KNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRIL 445
+ + I + +D + +Y D+ ++ + ++ L
Sbjct: 76 LRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEAL 135
Query: 446 RPEGAIII 453
+P G I
Sbjct: 136 KPGGVFIT 143
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 19/157 (12%)
Query: 96 IPIKNGTVRTALDTGCGVASWGAYL----WSRNVIAMSFAPRDSHEAQVQFALERGVPAV 151
+PIK + L G + +++ V A+ +APR E +
Sbjct: 70 MPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL---DACAERENI 124
Query: 152 IGVLGTIKMPYASR-AFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS------G 204
I +LG P + + + L+ GGY +++
Sbjct: 125 IPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSID 184
Query: 205 PPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEK 241
+ K +K KE L+ KI + ++ +EK
Sbjct: 185 VTKDPKEIFKEQ---KEILEAGGFKIVDEVDIEPFEK 218
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 30/235 (12%)
Query: 23 HCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFP 82
H A +GYV P R P +A +A + ++ +
Sbjct: 24 HQFDMAKEGYVNLLPVQHKRSRDPGDSAEM-----MQARRAFLDAG-----------HYQ 67
Query: 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQF 142
D + QL + K V LD GCG + + ++ + ++ D + ++
Sbjct: 68 PLRDAIVAQLRERLDDKATAV---LDIGCGEGYY-THAFADALPEITTFGLDVSKVAIKA 123
Query: 143 ALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202
A +R V + ++P++ + D E+ RV++PGG+ +
Sbjct: 124 AAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP--------CKAEELARVVKPGGWVIT 175
Query: 203 SGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKKVND 257
+ P + + E+ E++ + + + +
Sbjct: 176 ATP--GPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPMRLRGDEAVA 228
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (91), Expect = 5e-04
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 105 TALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164
+DTG G + A L + + E + A + TIK+ S
Sbjct: 106 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165
Query: 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209
FD + Y+ + L+ GG + P N
Sbjct: 166 EGFDEKDVDALFLDVPDPW-NYIDKCWEALKGGGRFATVCPTTNQ 209
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.001
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 6/123 (4%)
Query: 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQF 142
++ L V+ +K G LD G G + + + +A+ +
Sbjct: 19 EEKYATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA 76
Query: 143 ALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVL 202
V + A+ D+A C + + L+PGG ++
Sbjct: 77 EELGVSERVHFIHNDAAGYVANEKCDVAACVGATW-IAGGFAGAEELLAQSLKPGGIMLI 135
Query: 203 SGP 205
P
Sbjct: 136 GEP 138
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 38.3 bits (88), Expect = 0.001
Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 9/144 (6%)
Query: 86 DKYIDQLASVI--PIKNGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFA 143
D Y+ L + + K + +D GCG G L + DS E + A
Sbjct: 12 DDYVSFLVNTVWKITKPVHI---VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 68
Query: 144 LERGVPAVIGVLGTIKMPYASRAFDMAHC--SRCLIPWGANDGRYMIEVDRVLRPGGYWV 201
E D + + ++ ++ GG +
Sbjct: 69 RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
Query: 202 LSGPPINWKTNYKAWQRPKEELQE 225
P +W +N ++ E+ E
Sbjct: 129 CFEP--HWISNMASYLLDGEKQSE 150
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.0 bits (87), Expect = 0.002
Identities = 21/199 (10%), Positives = 50/199 (25%), Gaps = 19/199 (9%)
Query: 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFA 143
+Y L ++ LD CG L +V ++ + + A +
Sbjct: 42 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW 99
Query: 144 LERGVPAVIGVLGTI--------------KMPYASRAFDMAHCSRCLIPWGANDGRYMIE 189
R PA + + + +
Sbjct: 100 NRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKN 159
Query: 190 VDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIA 249
+ ++RPGG V+ ++ + P + + + ++I +
Sbjct: 160 IASMVRPGGLLVIDHRNYDYILSTG-CAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTL 218
Query: 250 VWQKKVNDESCRARRDDSR 268
+ +V S+
Sbjct: 219 DYTVQVPGAGRDGAPGFSK 237
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 37.2 bits (85), Expect = 0.003
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 3/114 (2%)
Query: 107 LDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164
LD G G I + A + +P+
Sbjct: 21 LDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80
Query: 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQR 218
+FD+ C + ++ + + EV RVL+ G ++L +
Sbjct: 81 DSFDIITCRYAAHHF-SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 133
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 506 | |||
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.71 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.64 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.63 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.63 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.6 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.59 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.58 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.58 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.57 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.57 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.56 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.56 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.55 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.54 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.54 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.54 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.53 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.53 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.52 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.52 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.52 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.51 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.5 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.49 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.49 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.49 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.47 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.47 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.47 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.46 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.46 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.46 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.45 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.45 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.45 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.45 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.45 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.44 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.44 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.44 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.44 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.43 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.43 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.42 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.4 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.36 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.35 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.35 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.33 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.32 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.31 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.29 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.29 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.28 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.27 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.27 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.26 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.26 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.25 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.25 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.24 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.23 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.23 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.23 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.2 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.18 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.18 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.18 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.16 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.15 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.15 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.12 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.12 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.1 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.08 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.07 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.07 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.07 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.05 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.04 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.04 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.03 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.01 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.99 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.94 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.91 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.88 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.85 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.84 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.82 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.8 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.8 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.8 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.79 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.73 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.72 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.65 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.62 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.61 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.6 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.59 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.56 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.55 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.55 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.5 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.48 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.46 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.46 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.44 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.41 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.4 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.39 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.35 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.34 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.3 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.29 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.27 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.24 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.24 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.23 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.21 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.2 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.16 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.15 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.14 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.1 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.08 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.07 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.05 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.03 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.03 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.01 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.0 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.99 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.98 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.98 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.97 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.94 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.93 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.93 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.85 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.72 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.7 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.65 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.63 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.63 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.61 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.57 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.55 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.51 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.5 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.47 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.46 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.42 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.37 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.36 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.34 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.34 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.34 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.34 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.33 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.25 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.2 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.14 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.04 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.97 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.91 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.91 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.9 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 96.89 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.85 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 96.85 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.79 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.65 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.64 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.57 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.54 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.53 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.43 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.38 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.37 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.17 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.97 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 95.97 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.94 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.79 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.71 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.69 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.5 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.43 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.86 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.85 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.8 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.7 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.64 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.44 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.32 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 94.19 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 93.49 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.31 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.05 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.04 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.02 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 92.97 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.84 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.64 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.52 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.39 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.28 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.08 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.01 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.72 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.59 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.38 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.35 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.06 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.76 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.46 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.13 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.08 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.71 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 87.47 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 87.33 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.46 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.8 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.73 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.5 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 85.42 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.93 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 83.66 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.58 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 83.11 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 82.59 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 82.05 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 81.67 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 81.41 |
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.3e-19 Score=171.81 Aligned_cols=161 Identities=20% Similarity=0.346 Sum_probs=123.5
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCcchhhHHhhcchhhccCCeEEcCCCCCCChhhHHHHHHHH
Q 010599 13 RHCPPEEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQL 92 (506)
Q Consensus 13 ~~cp~~~~~~~c~~~~p~gy~~p~~~p~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~i 92 (506)
-.|+. .|+|+++++||.++++-+..+ +..+++...+..+++.|+. ...+..-.+..++.+
T Consensus 18 l~C~~----~h~fd~~~~Gy~~ll~~~~~~-----~~~~~~~~~~~~ar~~~l~-----------~g~~~~l~~~~~~~l 77 (268)
T d1p91a_ 18 YICPQ----RHQFDMAKEGYVNLLPVQHKR-----SRDPGDSAEMMQARRAFLD-----------AGHYQPLRDAIVAQL 77 (268)
T ss_dssp EECTT----CCEEEBCTTSCEECSCSSSSC-----SCCCSSSHHHHHHHHHHHT-----------TTTTHHHHHHHHHHH
T ss_pred EECCC----CCccccccCceEecccccccc-----cCCCCCCHHHHHHHHHHHH-----------cCchHHHHHHHHHHH
Confidence 46875 789999999999988765554 3455677788888887776 112223345555566
Q ss_pred HhhCCCCCCCCCEEEEECCCCChhHHHHhhC--C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 010599 93 ASVIPIKNGTVRTALDTGCGVASWGAYLWSR--N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFD 168 (506)
Q Consensus 93 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD 168 (506)
.+.++ .++.+|||||||+|.++..|++. + ++++|+|+ .+++.|+++...+.+.++|+.++|+++++||
T Consensus 78 ~~~~~---~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~-----~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD 149 (268)
T d1p91a_ 78 RERLD---DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMD 149 (268)
T ss_dssp HHHSC---TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEE
T ss_pred HHhcC---CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchH-----hhhhhhhcccccccceeeehhhccCCCCCEE
Confidence 66654 34458999999999999999886 3 55677665 5556677777788999999999999999999
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 010599 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPINW 209 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~~~ 209 (506)
+|++.+++++ ++|+.|+|||||+|++++|..++
T Consensus 150 ~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 150 AIIRIYAPCK--------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp EEEEESCCCC--------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEeecCCHHH--------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 9999887654 58999999999999999886644
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.71 E-value=1.5e-17 Score=156.84 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=91.4
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
.++++.+++.++ .+|||||||+|.++..|+++ .++++|+|+.++..+..........++.+.+.+...+|+++++|
T Consensus 5 ~~ll~~~~l~~~--~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 5 AKLMQIAALKGN--EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHhcCCCCc--CEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 456666665544 49999999999999999987 48899999887766654444444455788899999999999999
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+|+|..+++|+ +++..+++++.|+|||||+|++..
T Consensus 83 D~v~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 83 HIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccc-CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999999775 678999999999999999999964
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=2.5e-17 Score=156.19 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=93.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMPYA 163 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp~~ 163 (506)
+..+.+.+.++++++. +|||||||+|.++..|+++ .++++|+|+.++..+... +...+. .+.+.++|+..+|++
T Consensus 3 ~~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~-~~~~~~~~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF-AQEKGVENVRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHHTCCSEEEEECBTTBCCSC
T ss_pred hHHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhh-hccccccccccccccccccccc
Confidence 3456677777665544 9999999999999999987 489999998777655533 333443 488888999999999
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++||+|+|..+++| .+++..+++++.|+|||||+++++.
T Consensus 80 ~~~fD~v~~~~~l~~-~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 80 DDSFDIITCRYAAHH-FSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp TTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeeeeceeec-ccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 999999999999976 5678999999999999999999964
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.5e-16 Score=148.94 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=85.6
Q ss_pred CCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 103 VRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
..+|||||||+|.++..|++.+ ++++|+|+.++..+. +.+...+....+...|+.++|+++++||+|+|..+++|+.
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 3489999999999999999874 799999987776554 4444556777888889999999999999999999998864
Q ss_pred C-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 181 A-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 181 ~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+ +...+|+++.++|||||+|++..+
T Consensus 117 ~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 117 PLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 3 447899999999999999998754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=7.9e-16 Score=142.76 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=91.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCCC
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~ 433 (506)
.+|||||||+|.++..|.. ++++|.|++|++.|.+|++ ..+....++++..+++||+|+|..+|+|.. +
T Consensus 38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d 106 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---D 106 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---C
T ss_pred CeEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---c
Confidence 3699999999999988864 4789999999999999975 344444567776679999999999999664 7
Q ss_pred HHHHHHHHhhcccCCcEEEEEeChh------------------------hHHHHHHHHhcCCceEE
Q 010599 434 IEDILLEMDRILRPEGAIIIRDEVD------------------------EIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii~d~~~------------------------~~~~~~~~~~~~~w~~~ 475 (506)
+..+|.|+.|+|||||.++|.+... ..+++.+++++.+++..
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 8899999999999999999964310 35789999999999744
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.63 E-value=7.8e-16 Score=149.98 Aligned_cols=113 Identities=16% Similarity=0.302 Sum_probs=89.4
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPY 162 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~ 162 (506)
+++.+....++. ++.+|||||||+|.++..|+++ .|+++|+++.++..+... +...++ .+.+..+++.++|+
T Consensus 55 ~~~~l~~~~~l~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~-~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 55 LASELAMTGVLQ--RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY-NNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHHhcCCC--CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcc-cccccccccccccccccccccc
Confidence 334444444444 3459999999999999999875 488999988776554433 333343 47888899999999
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++++||+|+|..+++|+ +++..+|+++.|+|||||+|++..
T Consensus 132 ~~~sfD~V~~~~~l~h~-~d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp CTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhccchhhhc-cCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999886 578999999999999999999975
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=3.7e-16 Score=148.02 Aligned_cols=105 Identities=17% Similarity=0.285 Sum_probs=82.8
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCceeE
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDL 418 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~D~ 418 (506)
+......+..+|||+|||+|.++..|++.+ .+|+++|.|++|+++|.++ |+ +..+..-.+.+++-+++||+
T Consensus 9 ~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 85 (234)
T d1xxla_ 9 IKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI 85 (234)
T ss_dssp HHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred HHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence 344555566789999999999999999875 4899999999999988766 22 22222223455544599999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|..+|+|. .++..+|.|+.|+|||||++++.+
T Consensus 86 v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 86 ITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeceeecc---cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 9999999854 478999999999999999999965
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.62 E-value=3.6e-16 Score=147.21 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=82.0
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCCCCCCcee
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYD 417 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~~~p~s~D 417 (506)
++..+.-.+..+|||||||+|.++..|++.+ .+|+++|.|++|++.|+++ +. +...+.-++.+++.+++||
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD 83 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH 83 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence 3443444455689999999999999999876 4799999999999998765 32 2233333445554459999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|+|..+|+|. .+++.+|.|+.|+|||||+++|.|
T Consensus 84 ~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 84 IVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccc---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999854 478999999999999999999965
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.2e-15 Score=144.54 Aligned_cols=98 Identities=21% Similarity=0.341 Sum_probs=81.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEc-cccccccCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH-GLFSLYKDK 431 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~-~~~~~~~~~ 431 (506)
..+|||+|||+|.++..|++.+ ..|+++|.|+.|++.|.+++....+..-.+++++.+++||+|.|. ++++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~--- 116 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV--- 116 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC---
T ss_pred CCEEEEECCCCchhcccccccc---eEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhh---
Confidence 3479999999999999999986 479999999999999999986444433346676556999999985 577754
Q ss_pred CCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 432 CNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.++..+|.|+.|+|||||.++|+..
T Consensus 117 ~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 117 ENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 4788899999999999999999764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=8.4e-16 Score=145.61 Aligned_cols=98 Identities=23% Similarity=0.402 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
++.+|||+|||+|.++..|++.+ ++++|+|+ .+++.|++++... +..+++.++|+++++||+|+|...+.|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~-----~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeeccc-----ccccccccccccc-cccccccccccccccccceeeecchhhh
Confidence 34589999999999999999885 67777765 4556677766543 4567889999999999999986543344
Q ss_pred CCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 180 GANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 180 ~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+++..+|+++.|+|||||+++++.+
T Consensus 116 ~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 116 VENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 67889999999999999999999875
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.59 E-value=2.4e-15 Score=144.40 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=103.7
Q ss_pred HHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceecccc---ccCCCCCCc
Q 010599 340 AYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWC---EAFSTYPRT 415 (506)
Q Consensus 340 ~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~---~~~~~~p~s 415 (506)
....++..+...+..+|||+|||+|.++..|+.+.. -+|+++|.++.|++.|+++.. ....+..+ ++++..+++
T Consensus 81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T d1xtpa_ 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCc
Confidence 345555666666778999999999999998876432 379999999999999988731 12222223 344444589
Q ss_pred eeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh----------------hHHHHHHHHhcCCceEEEeec
Q 010599 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~----------------~~~~~~~~~~~~~w~~~~~~~ 479 (506)
||+|+|..+|.|+.+ .++..+|.++.|+|||||+++|.|... ..+.+++++++.++++...+.
T Consensus 159 fD~I~~~~vl~hl~d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred cceEEeeccccccch-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 999999999997652 246689999999999999999965421 357899999999999765554
Q ss_pred CC
Q 010599 480 ED 481 (506)
Q Consensus 480 ~~ 481 (506)
..
T Consensus 238 q~ 239 (254)
T d1xtpa_ 238 QE 239 (254)
T ss_dssp CT
T ss_pred eC
Confidence 43
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=1.5e-15 Score=141.93 Aligned_cols=100 Identities=17% Similarity=0.302 Sum_probs=78.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c-cceeccccccCCCCCCceeEEEEccccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 428 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~ 428 (506)
.+|||||||+|.++..|++.+ .+|+++|.|++|++.|+++. . +.....-.+.++..+++||+|+|..+|+|+
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 579999999999999999976 47999999999999998762 1 111211123444445999999999999976
Q ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 429 KDKCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 429 ~~~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
.+ .++..+|.|+.|+|||||+++|.+..
T Consensus 116 ~~-~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EP-LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred Ch-hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 42 36778999999999999999997653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=3.2e-15 Score=142.47 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=91.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~l 160 (506)
...++.+.+.+.+.++ .+|||||||+|.++..|+++ .++++|+|+.++..+. +.+...++. +.+.+.|...+
T Consensus 19 ~~~~~~l~~~~~l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHHHTCCCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHHHcCCCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHHhhc
Confidence 5566778888876654 49999999999999999875 3788888887665443 344455543 78888888887
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++++||+|+|..+++|+ .+...+++++.|+|||||++++..+
T Consensus 96 -~~~~~fD~v~~~~~~~~~-~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp -CCSSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -cccCceeEEEEEehhhcc-CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 468899999999999775 5679999999999999999999754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.7e-15 Score=140.94 Aligned_cols=128 Identities=18% Similarity=0.268 Sum_probs=97.6
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc---cceecccc---ccCCCCCCceeEEEEcc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWC---EAFSTYPRTYDLIHAHG 423 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~---~~~~~~~~---~~~~~~p~s~D~v~~~~ 423 (506)
..+..+|||||||+|.++..|+++.. .+|+++|.|++||+.|+++.- .......| +.++..+++||+|++..
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 34557899999999999999876543 479999999999999988732 12222233 34554459999999999
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---------------hHHHHHHHHhcCCceEEEeecC
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------EIIKVKKIVGGMRWDTKMVDHE 480 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------~~~~~~~~~~~~~w~~~~~~~~ 480 (506)
+|+|+.+ .++..+|.++.|+|||||.++|.|... ..+++++++++.++++...+..
T Consensus 136 ~l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 136 VIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccccchh-hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 9997653 245689999999999999999975321 4688999999999997655443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.57 E-value=4.3e-15 Score=139.76 Aligned_cols=103 Identities=8% Similarity=0.093 Sum_probs=83.8
Q ss_pred CceEEeecCcccHHHHHHHhCC-CeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC-CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~-~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p-~s~D~v~~~~~~~ 426 (506)
..+|||+|||||..+..|++.- ....+|+++|.|++||+.|.++ +....++..+.++..+| ..+|+|+|+.+|+
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 3579999999999998887531 1236899999999999999886 34455555667777777 8999999999988
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+. +..++..+|++|+|+|||||.+++.|.
T Consensus 120 ~~-~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 120 FL-PPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp GS-CGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-ChhhHHHHHHHHHHhCCCCceeecccc
Confidence 65 355788999999999999999999763
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.56 E-value=1e-14 Score=138.89 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=78.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCC--CCceeEEEEc-ccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTY--PRTYDLIHAH-GLFSL 427 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~--p~s~D~v~~~-~~~~~ 427 (506)
.++|||+|||+|.++..|++.+ .+|+++|.|++||+.|.+|.- ...+...+.++..+ +++||+|.|. ++|.+
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 4679999999999999999987 479999999999999988621 01122234444443 4899999985 67887
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
+.+..++..+|.++.|.|||||.|+|
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 77777888999999999999999996
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=7.6e-15 Score=142.79 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC
Q 010599 335 KKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS 410 (506)
Q Consensus 335 ~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~ 410 (506)
....+.+..++..+...+..+|||||||+|+++.++++.. ..+|+++|.|+++++.|.+| |+...+.....+..
T Consensus 35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 3345556667777777778899999999999999988752 25899999999999988776 55444444445666
Q ss_pred CCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 411 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 411 ~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.++++||.|.+..+|.|..+ .....+|+++.|+|||||.++|.+
T Consensus 113 ~~~~~fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 113 DFAEPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GCCCCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhccchhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEE
Confidence 67899999999999998763 367889999999999999999853
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=3.8e-15 Score=141.92 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=92.4
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCcee
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYD 417 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D 417 (506)
+...+...+..+|||||||+|.++..|++.. ...|+++|.|+.|++.|+++ |+...+...+.++.. .+++||
T Consensus 25 l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD 102 (245)
T d1nkva_ 25 LGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCD 102 (245)
T ss_dssp HHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEE
T ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCcee
Confidence 3333444455789999999999999998742 25789999999999988776 542222222333333 349999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEE
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
+|+|..++.|.. ++..+|.||.|+|||||+++|.+.. .....+...+.+.+|++.
T Consensus 103 ~v~~~~~~~~~~---d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v 179 (245)
T d1nkva_ 103 VAACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 179 (245)
T ss_dssp EEEEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred EEEEEehhhccC---CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEE
Confidence 999999998554 6788999999999999999996531 134556677788888643
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=3.7e-15 Score=141.96 Aligned_cols=116 Identities=14% Similarity=0.190 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc--ceeccccccCCC
Q 010599 334 WKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI--GIYHDWCEAFST 411 (506)
Q Consensus 334 W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~--~~~~~~~~~~~~ 411 (506)
+...+..+..++......+..+|||+|||||.++..|++.+ .+|+++|.|++|++.|.++... ..+...+.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~ 99 (251)
T d1wzna1 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE 99 (251)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc---eEEEEEeeccccccccccccccccccchheehhhhh
Confidence 33344445555554555567789999999999999999986 4899999999999999887310 011122233333
Q ss_pred --CCCceeEEEEc-cccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 412 --YPRTYDLIHAH-GLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 412 --~p~s~D~v~~~-~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++++||+|+|. ++|.|. +..++..+|.++.|+|||||+++|
T Consensus 100 l~~~~~fD~I~~~~~~~~~~-~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 100 IAFKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp CCCCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccchHhhhhhhhhcC-ChHHHHHHHHHHHHHcCCCcEEEE
Confidence 34899999985 567754 334677899999999999999998
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1e-14 Score=139.27 Aligned_cols=142 Identities=12% Similarity=0.049 Sum_probs=101.8
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cc-----------------------------
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IG----------------------------- 400 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~----------------------------- 400 (506)
+..+|||+|||+|.++..++..+ ..+|+++|.|++|++.|.++-- ..
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 35689999999999987777654 3589999999999999876521 00
Q ss_pred ------eeccccccC---CCCCCceeEEEEccccccccC-CCCHHHHHHHHhhcccCCcEEEEEeChh------------
Q 010599 401 ------IYHDWCEAF---STYPRTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEVD------------ 458 (506)
Q Consensus 401 ------~~~~~~~~~---~~~p~s~D~v~~~~~~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------ 458 (506)
.......+. +..+++||+|.+..++++... +.++..+|.+|.|+|||||++++.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 000001111 122389999999999987643 2367789999999999999999976432
Q ss_pred ----hHHHHHHHHhcCCceEEEeecC-------CCCCCCeEEEEEEec
Q 010599 459 ----EIIKVKKIVGGMRWDTKMVDHE-------DGPLVPEKILVAVKQ 495 (506)
Q Consensus 459 ----~~~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~l~~~k~ 495 (506)
..+.+++++++.++++...+.. .....+..+++|||+
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 4688999999999986644221 122345678889985
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.54 E-value=5.7e-15 Score=143.76 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=92.0
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eeccccccCCCCCCceeEEEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~~~~~~~~~~p~s~D~v~~ 421 (506)
...+..+|||||||+|.++..|+++. ..+|+++|.|+.|++.|.++ |+.. ....-.+++|+.+++||+|+|
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~ 141 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWS 141 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhc
Confidence 33445689999999999999998752 25799999999999988876 3322 222223445544599999999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------------------hhHHHHHHHHhcCCceEE
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------------------~~~~~~~~~~~~~~w~~~ 475 (506)
..+|.|.. ++..+|.|+.|+|||||+|+|.|.. ...+..+++++..+|+..
T Consensus 142 ~~~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i 214 (282)
T d2o57a1 142 QDAFLHSP---DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTL 214 (282)
T ss_dssp ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEE
T ss_pred cchhhhcc---CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceE
Confidence 99998654 7789999999999999999996531 124566777888888744
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=2.1e-14 Score=136.62 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcC-cccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSR-CLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~-~l~~ 178 (506)
+..+|||||||+|.++..|+++ .++++|+|+.|+..+..+ +.+.+.++.+.++|+.+++++ ++||+|+|.. +++|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~-~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccc-cccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 3458999999999999999988 488999998877555543 445677889999999999987 5899999975 4444
Q ss_pred cCC-ChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 179 WGA-NDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 179 ~~~-~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+.. +...+|+++.++|||||+|++..+.
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 322 2368999999999999999998643
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=5.1e-15 Score=138.99 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
+..+|||||||+|.++..|+.+ .|+++|+|+.++..+.............+.+.|+..+++++++||+|+|..+++|
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h 139 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 139 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 4468999999999999998765 4889999887776554443332223457888999999999999999999999988
Q ss_pred cCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 179 WGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+.. ..+++++.++|||||.+++..
T Consensus 140 ~~~~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 140 LTDQHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhhhhHHHHHHHhcCCcceEEEEE
Confidence 65422 579999999999999999975
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.52 E-value=2.5e-14 Score=131.70 Aligned_cols=99 Identities=18% Similarity=0.334 Sum_probs=80.5
Q ss_pred CEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcccccC
Q 010599 104 RTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIPWG 180 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~ 180 (506)
.+|||||||+|..+..|++++ ++++|+|+.++..+... +.+.+.+ +.+...|...+++ +++||+|+|..+++|+.
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~ 109 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERI-KAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLE 109 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSC
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHH-hhhccccchhhhheecccccc-cccccEEEEeeeeecCC
Confidence 389999999999999999985 78899998777655443 3444554 5677778777775 67899999999998875
Q ss_pred CCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 181 AND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 181 ~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.. ..+++++.++|+|||++++..
T Consensus 110 ~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 110 AQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp TTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 544 689999999999999999975
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=2.2e-14 Score=132.83 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=79.8
Q ss_pred EEEEECCCCChhHHHHhhCCcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChH
Q 010599 105 TALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDG 184 (506)
Q Consensus 105 ~VLDiGCG~G~~~~~L~~~~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~ 184 (506)
+|||||||+|.++..+.+ ++++|+|+. +++.+++++ +.+.+.+...+|+++++||+|+|..+++|+ +++.
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~~giD~s~~-----~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-~d~~ 108 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--KIGVEPSER-----MAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFV-DDPE 108 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--CEEEESCHH-----HHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGS-SCHH
T ss_pred eEEEECCCCcccccccce--EEEEeCChh-----hcccccccc--cccccccccccccccccccccccccccccc-cccc
Confidence 799999999999988864 688888764 455666654 567788999999999999999999999886 6789
Q ss_pred HHHHHHHHhcCCCeEEEEEcCCCC
Q 010599 185 RYMIEVDRVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 185 ~~l~e~~rvLkPGG~li~~~p~~~ 208 (506)
.+++++.++|+|||.+++..+...
T Consensus 109 ~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 109 RALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cchhhhhhcCCCCceEEEEecCCc
Confidence 999999999999999999886553
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.52 E-value=2e-14 Score=136.79 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=85.3
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
+.+.+.+.....++.+|||||||+|.++..|++++ ++++|+|+.|+..+.. .+...+.++.+.++|+..++++ ++|
T Consensus 25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~-~~~~~~~~v~~~~~d~~~~~~~-~~f 102 (246)
T d1y8ca_ 25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAEN-KFRSQGLKPRLACQDISNLNIN-RKF 102 (246)
T ss_dssp HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHH-HHHHTTCCCEEECCCGGGCCCS-CCE
T ss_pred HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccc-cccccCccceeeccchhhhccc-ccc
Confidence 33444443233345689999999999999999985 8889888877765543 3445677889999999888864 689
Q ss_pred eEEEEc-CcccccCC--ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 168 DMAHCS-RCLIPWGA--NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 168 DlV~~~-~~l~~~~~--~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+|+|. .++.|+.. +...+|+++.+.|||||.|++...
T Consensus 103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 999986 44555433 236799999999999999998653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=3.4e-14 Score=138.67 Aligned_cols=116 Identities=12% Similarity=0.140 Sum_probs=90.8
Q ss_pred HHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC
Q 010599 337 HVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY 412 (506)
Q Consensus 337 ~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~ 412 (506)
..+.+..++..+...+..+|||||||.|+++.+++++- ..+|++++.|+++++.|.++ |+...++.-..++++.
T Consensus 46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence 44455666666677777899999999999999998641 25899999999998876665 5554444445566666
Q ss_pred CCceeEEEEccccccccCC------CCHHHHHHHHhhcccCCcEEEEE
Q 010599 413 PRTYDLIHAHGLFSLYKDK------CNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~------~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+++||.|.|-.+|.|..+. .....++++++|+|||||++++.
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 7999999999999977643 23578999999999999999985
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.50 E-value=4.1e-14 Score=137.69 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=90.8
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l 160 (506)
+.|++.+.+.+... ..+.+|||||||+|.++..|++. .++++|+|+.++..+. +.....+.++.+.+.|+..+
T Consensus 12 ~d~l~~l~~~~~~~-~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~f~~~d~~~~ 89 (281)
T d2gh1a1 12 DDYVSFLVNTVWKI-TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDATEI 89 (281)
T ss_dssp HHHHHHHHHTTSCC-CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH-HHHHSSSSEEEEEESCTTTC
T ss_pred HHHHHHHHHHHhcc-CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh-cccccccccccccccccccc
Confidence 55666676655222 34568999999999999999864 3789999887665443 33344456678888899888
Q ss_pred CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 161 PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+++ ++||+|+|..+++|+ +++..+|+++.++|||||.+++..|.
T Consensus 90 ~~~-~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 90 ELN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CCS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccc-CCceEEEEehhhhcC-CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 876 479999999999775 67899999999999999999998753
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.9e-14 Score=137.88 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=79.1
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cceeccccccCCCCCCceeEEEEcccccc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~~~~~~~~~~~~~p~s~D~v~~~~~~~~ 427 (506)
...+..+|||+|||+|.++..|++.. ...+++++|.|+.|++.|.++.. +.....-.+++++.+++||+|++..++.
T Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~- 158 (268)
T d1p91a_ 81 LDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC- 158 (268)
T ss_dssp SCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC-
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH-
Confidence 34556789999999999999998863 23579999999999999998753 2222222356666669999999966554
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHH
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKK 465 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~ 465 (506)
.+.|+.|||||||++++..+.. .+.+++.
T Consensus 159 ---------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~ 188 (268)
T d1p91a_ 159 ---------KAEELARVVKPGGWVITATPGPRHLMELKG 188 (268)
T ss_dssp ---------CHHHHHHHEEEEEEEEEEEECTTTTHHHHT
T ss_pred ---------HHHHHHHHhCCCcEEEEEeeCCcchHHHHH
Confidence 2689999999999999987543 3344443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.49 E-value=3.2e-14 Score=133.66 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCChhHHHHhhC------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|..+..|++. .++++|+|+.|+..+....+. .+....+........+++...+|+|+|+.+
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-SCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-hcccchhhhccchhhccccccceeeEEeee
Confidence 4558999999999999988863 478999988777665544432 233333333333334555678999999999
Q ss_pred ccccCC-ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 176 LIPWGA-NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 176 l~~~~~-~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
++++.. ++..+|++++|+|||||.|++..+
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 877643 457999999999999999999753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.49 E-value=3.1e-14 Score=133.87 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=91.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCCCCCceeEEEEccccccccC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
..+|||+|||+|.++..|++.+ ..|+++|.|++|++.|.++.. +...+.-.++++ .+++||+|.|.++|+|.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~-- 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHI-- 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGC--
T ss_pred CCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEec--
Confidence 4469999999999999998876 469999999999999988742 122222223332 35999999999999955
Q ss_pred CCCHHHHHHHHh-hcccCCcEEEEEeCh---------------------------------hhHHHHHHHHhcCCceEEE
Q 010599 431 KCNIEDILLEMD-RILRPEGAIIIRDEV---------------------------------DEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 431 ~~~~~~~l~e~~-RvLrPgG~~ii~d~~---------------------------------~~~~~~~~~~~~~~w~~~~ 476 (506)
.++..+|.|+. |+|||||.++|..+. -..+.++.++.+.++++..
T Consensus 95 -~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 95 -DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp -SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred -CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 47889999997 899999999996321 0256799999999998654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1e-13 Score=135.21 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=91.4
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCC-
Q 010599 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVP- 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~--v~~vdis~~dl~~~~~~~a~~~~~~- 149 (506)
|+.+...+..+....++.+.+.+.+.+ +.+|||||||.|.++.+++++ + ++++++|+..+..+. +.+.+.++.
T Consensus 35 ~~~~~~tL~~Aq~~k~~~~~~~l~l~~--G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~ 111 (291)
T d1kpia_ 35 FERPDMTLEEAQYAKRKLALDKLNLEP--GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPR 111 (291)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTCCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSS
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCC--CCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccch
Confidence 555555666666778889999997655 459999999999999999875 4 677777665443222 333444554
Q ss_pred -eEEEEeccccCCCCCCCeeEEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEc
Q 010599 150 -AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 -~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+...| .++.+++||.|+|..+++|+.+. -..+++++.++|||||.+++.+
T Consensus 112 ~v~~~~~d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 112 RKEVRIQG---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CEEEEECC---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hhhhhhhc---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 3333333 34567899999999999998642 2689999999999999999854
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.4e-14 Score=136.15 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=98.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--cccee--------------------------
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIY-------------------------- 402 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~-------------------------- 402 (506)
.+.++|||+|||+|.+...++.+. ..+|+++|.|++|++.+.++- ..+.+
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 345689999999998876555543 358999999999999887541 10000
Q ss_pred ---------ccccc-----cCCCCCCceeEEEEcccccccc-CCCCHHHHHHHHhhcccCCcEEEEEeChh---------
Q 010599 403 ---------HDWCE-----AFSTYPRTYDLIHAHGLFSLYK-DKCNIEDILLEMDRILRPEGAIIIRDEVD--------- 458 (506)
Q Consensus 403 ---------~~~~~-----~~~~~p~s~D~v~~~~~~~~~~-~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--------- 458 (506)
.+... ..+..+++||+|.+..++++.. ++.++..+|.++.|+|||||.|++.+...
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 00101 1112236899999999998764 34568899999999999999999965422
Q ss_pred -------hHHHHHHHHhcCCceEEEeecC-------CCC--CCCeEEEEEEe
Q 010599 459 -------EIIKVKKIVGGMRWDTKMVDHE-------DGP--LVPEKILVAVK 494 (506)
Q Consensus 459 -------~~~~~~~~~~~~~w~~~~~~~~-------~~~--~~~~~~l~~~k 494 (506)
..++|++++.+.++++...+.. .+. .....+++|||
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~~~~~~~d~~~~~~~~ArK 262 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQK 262 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEEEEEEeeccCcccccccccceEEEEEEEe
Confidence 5689999999999987643221 111 12346888988
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=6.7e-14 Score=136.00 Aligned_cols=125 Identities=14% Similarity=0.188 Sum_probs=89.8
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC-
Q 010599 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP- 149 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~- 149 (506)
|.++......+....++.+.+.+.+.+ +.+|||||||+|.++.+++++ .|+++++|+..+..+. +.+.+.++.
T Consensus 26 ~~~~~~tL~~AQ~~k~~~~~~~l~l~~--g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~ 102 (280)
T d2fk8a1 26 FEPPELTLEEAQYAKVDLNLDKLDLKP--GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNR 102 (280)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTSCCCT--TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSS
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcCCCC--CCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhcccc
Confidence 444444455555667788999886654 459999999999999998876 4778888775554332 333444544
Q ss_pred -eEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 150 -AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 150 -~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+...+...+ +++||.|++..+++|+.... ..+++++.++|||||.+++.+
T Consensus 103 ~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 103 SRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred chhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 33443444443 46899999999999976433 789999999999999999854
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.46 E-value=6.9e-14 Score=136.06 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=79.1
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCC--CCceeEEEEcccc
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTY--PRTYDLIHAHGLF 425 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~--p~s~D~v~~~~~~ 425 (506)
..+..+|||+|||+|.++..|++.--...+|+++|.|++|++.|+++. ....+...+.++..+ +++||+|+|.++|
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 345578999999999999998864212257999999999999998762 111222233444333 4899999999999
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
+|.. ++..+|.++.|+|||||++++.|.
T Consensus 105 ~~~~---d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 105 LHMT---TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GGCS---SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hcCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 8554 778999999999999999999764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.5e-13 Score=129.39 Aligned_cols=124 Identities=9% Similarity=0.021 Sum_probs=92.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCcc-c-------------------eeccccccC-
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-G-------------------IYHDWCEAF- 409 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~-~-------------------~~~~~~~~~- 409 (506)
....+|||+|||+|..+.+|++.| .+|+++|.|+.+++.|+++.-. . .+...+.++
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 345689999999999999999987 4899999999999998876321 0 111122332
Q ss_pred ---CCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh------------hhHHHHHHHHhcCCceE
Q 010599 410 ---STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 410 ---~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~------------~~~~~~~~~~~~~~w~~ 474 (506)
+..+.+||+|+...+|.++. ..+.+.++.+|.|+|||||+++|.... -..++++.++.. .|++
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred hccccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence 22348999999999998765 456788999999999999998885321 145778898866 6887
Q ss_pred EEeec
Q 010599 475 KMVDH 479 (506)
Q Consensus 475 ~~~~~ 479 (506)
...+.
T Consensus 199 ~~le~ 203 (229)
T d2bzga1 199 RCLEK 203 (229)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65544
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.46 E-value=4.8e-14 Score=135.20 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=83.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
.+++.++. ....+|||+|||+|.++..|+.+ .|+++|+++.++..+..... ....+.+.+.++..+++++++|
T Consensus 84 ~fl~~l~~--~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T d1xtpa_ 84 NFIASLPG--HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHTSTT--CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHhhCCC--CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc--ccccceeEEccccccccCCCcc
Confidence 34444432 34558999999999999988754 48899998766644432221 1123567788999999999999
Q ss_pred eEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEcC
Q 010599 168 DMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+|+|..+++|+.++. ..+|+++.++|||||+|++..+
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999998875432 5889999999999999999754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=8.2e-14 Score=133.20 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=95.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC-CCC-CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS-TYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~-~~p-~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.++.++++.+ ..|+++|.++.|++.|+++ |+... ..+.++. .++ ++||+|.|+....
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g---~~V~gvDis~~av~~A~~na~~n~~~~~--~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVRPR--FLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCCCE--EEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCEEEEcccchhHHHHHHHhcC---CEEEEEECChHHHHHHHHHHHHcCCcee--EEeccccccccccccchhhhccccc
Confidence 4589999999999999998876 4799999999999988864 33111 1122222 234 8999999954433
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
.+..++.++.|+|||||+|++++-.. ..+.+.+.+.+.+|++.....+ +.+..|+.+|
T Consensus 196 ------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~----~~Wv~l~~~r 254 (254)
T d2nxca1 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred ------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEE----CCEEEEEEeC
Confidence 35678999999999999999987543 5678889999999997654443 2588888776
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.45 E-value=7.1e-14 Score=128.62 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=77.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC--CCCceeEEEEcccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST--YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~--~p~s~D~v~~~~~~~~ 427 (506)
.+|||||||+|.++..|++++ .+|+++|.|+.|++.+.++ |+ ..+...+.++.. ++++||+|+|..+|+|
T Consensus 32 grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVVMMF 107 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred CcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeeeeec
Confidence 379999999999999999987 4799999999999977654 33 222333344443 3599999999999987
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+. ......+|.++.|+|||||.+++..
T Consensus 108 ~~-~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 108 LE-AQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp SC-TTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 64 4567889999999999999999953
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=2.4e-13 Score=132.13 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=90.6
Q ss_pred HHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCC
Q 010599 337 HVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY 412 (506)
Q Consensus 337 ~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~ 412 (506)
..+....+...+...+..+|||||||.|+++.++++.- ...|++++.|++.++.|.+| |+...+.....++..+
T Consensus 47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (285)
T d1kpga_ 47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF 124 (285)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence 34445556666666777899999999999999987742 36899999999999977665 4544444445667677
Q ss_pred CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|.+||.|.|-.+|.|..+ .....+++++.|+|||||+++|.
T Consensus 125 ~~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 125 DEPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp CCCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 899999999999997763 35678999999999999999983
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.45 E-value=1.4e-13 Score=129.35 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=79.1
Q ss_pred CCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEEcCccccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYASRAFDMAHCSRCLIPW 179 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~ 179 (506)
+.+|||||||+|.++..|+++ .|+++|+|+.+ ++.|+++. ..+.+...+...+++ +++||+|+|..+++|+
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~-----i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA-----ISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHH-----HHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHH-----hhhhhccccccccccccccccccc-ccccccccccceeEec
Confidence 347999999999999999987 58888887644 44554442 346677777777775 5789999999999885
Q ss_pred CCChHHHHHHHH-HhcCCCeEEEEEcCCCC
Q 010599 180 GANDGRYMIEVD-RVLRPGGYWVLSGPPIN 208 (506)
Q Consensus 180 ~~~~~~~l~e~~-rvLkPGG~li~~~p~~~ 208 (506)
+++..+|.++. ++|||||.+++++|...
T Consensus 95 -~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 95 -DDPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp -SSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred -CCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 67899999998 89999999999987543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.45 E-value=7.9e-14 Score=133.30 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcC--CCeEEEEeccccCCC-CCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERG--VPAVIGVLGTIKMPY-ASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~--~~~~~~~~d~~~lp~-~~~sfDlV~~~~~ 175 (506)
++.+|||||||+|..+..+++. .++|+|+|+.++..+..+ +.+.+ ..+.+.++|+...++ ..++||+|+|.++
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 4558999999999998888775 378999998777555433 22222 347788888877776 4678999999999
Q ss_pred ccccCCCh---HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 176 LIPWGAND---GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++|+.... ..+++++.++|||||+|+++.+.
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 98865443 47999999999999999998753
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.44 E-value=2e-13 Score=130.70 Aligned_cols=149 Identities=22% Similarity=0.247 Sum_probs=104.2
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCCCceeE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYPRTYDL 418 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p~s~D~ 418 (506)
++..+...+.++|||||||+|.++..|+++. ....++.+|.+ +|++.+.++ |+...+.....+ +...|.+||+
T Consensus 72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~ 149 (253)
T d1tw3a2 72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADA 149 (253)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEE
T ss_pred HHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccCH-HHHHHHHHHHHHhhcccchhhccccchhhcccchhh
Confidence 3445566778899999999999999998752 23568888985 788877665 443333333334 3445688999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh--------------------------hHHHHHHHHhcCCc
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------------EIIKVKKIVGGMRW 472 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~--------------------------~~~~~~~~~~~~~w 472 (506)
|++.++|+++.+ .+...+|+++.|+|||||+|+|.|... ..+++++++++.++
T Consensus 150 v~~~~vlh~~~d-~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf 228 (253)
T d1tw3a2 150 IILSFVLLNWPD-HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL 228 (253)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE
T ss_pred eeeccccccCCc-hhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCC
Confidence 999999986542 234578999999999999999976421 24677889999999
Q ss_pred eEEEeecCCCCCCC-eEEEEEEec
Q 010599 473 DTKMVDHEDGPLVP-EKILVAVKQ 495 (506)
Q Consensus 473 ~~~~~~~~~~~~~~-~~~l~~~k~ 495 (506)
++..+..-.++..+ ...|++.|+
T Consensus 229 ~~~~v~~~~~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 229 VVEEVRQLPSPTIPYDLSLLVLAP 252 (253)
T ss_dssp EEEEEEEEECSSSSCEEEEEEEEE
T ss_pred eEEEEEECCCCCCCccEEEEEEec
Confidence 97654443344333 445665554
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=4.3e-13 Score=123.05 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=89.7
Q ss_pred CCeEEcCCCCCCChhh-HHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHH
Q 010599 69 GNVFRFPGGGTQFPQG-ADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALE 145 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~-~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~ 145 (506)
+..+.|......|..+ .+...+.+.+.+... ++.+|||+|||+|.++..++.. .++++|+++.++..+..+....
T Consensus 20 g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~--~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~ 97 (194)
T d1dusa_ 20 GKKLKFKTDSGVFSYGKVDKGTKILVENVVVD--KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN 97 (194)
T ss_dssp TEEEEEEEETTSTTTTSCCHHHHHHHHHCCCC--TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT
T ss_pred CeeEEEEcCCCccCCCCcCHHHHHHHHhCCcC--CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHh
Confidence 4445553333333322 122234456666443 4559999999999999999876 5899999887665544433332
Q ss_pred c--CCCeEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 146 R--GVPAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 146 ~--~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. +..+.+...|... ++++++||+|+|+.++++..+....+++++.++|||||.+++...
T Consensus 98 ~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 98 NLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp TCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 2 2245666667655 567889999999988754322236789999999999999988653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=6.9e-14 Score=133.74 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=86.8
Q ss_pred CCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEE
Q 010599 77 GGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGV 154 (506)
Q Consensus 77 ~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~ 154 (506)
.+..|+.|.+.-.+.+.+.+.....++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+..++++..+.+
T Consensus 95 pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~~ 173 (254)
T d2nxca1 95 PGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLE 173 (254)
T ss_dssp CC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEE
T ss_pred cccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEEe
Confidence 34456666655544444444322245669999999999999988876 4899999998885554 55667788888887
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+... .++.++||+|+++....+ ...++.++.++|||||+|++++
T Consensus 174 ~d~~~-~~~~~~fD~V~ani~~~~----l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 174 GSLEA-ALPFGPFDLLVANLYAEL----HAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp SCHHH-HGGGCCEEEEEEECCHHH----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccc-cccccccchhhhcccccc----HHHHHHHHHHhcCCCcEEEEEe
Confidence 77654 345679999999754422 3678899999999999999985
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=2.9e-13 Score=131.55 Aligned_cols=125 Identities=15% Similarity=0.211 Sum_probs=92.2
Q ss_pred cCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--
Q 010599 74 FPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV-- 148 (506)
Q Consensus 74 f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~-- 148 (506)
|..++..+..+....++.+.+.+.+.+ +.+|||||||.|.++.++++. .|+++++|+..+..+.. .+.+.+.
T Consensus 36 ~~~~~~tL~eAQ~~k~~~~~~~l~l~~--G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~-~~~~~g~~~ 112 (285)
T d1kpga_ 36 FERDDMTLQEAQIAKIDLALGKLGLQP--GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ-LVANSENLR 112 (285)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTTTCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTCCCCS
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcCCCC--CCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHH-HHHhhhhhh
Confidence 455555666666888899999997654 459999999999999998876 36777776644433322 2223332
Q ss_pred CeEEEEeccccCCCCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 149 PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 149 ~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+.+...|...++ ++||.|++..+++|+.... ..+++++.|+|||||.+++.+
T Consensus 113 ~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 113 SKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 3556666766664 6899999999999976433 789999999999999999843
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.43 E-value=4.5e-14 Score=128.64 Aligned_cols=127 Identities=7% Similarity=0.046 Sum_probs=90.2
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-cc--------------eeccccccCCCCC
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG--------------IYHDWCEAFSTYP 413 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~~--------------~~~~~~~~~~~~p 413 (506)
...+..+|||+|||+|..+..|+++| .+|+++|.|++|++.|+++.- .+ .....+.++...+
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 34456689999999999999999987 589999999999999998731 00 0111223332222
Q ss_pred ----CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh------------hHHHHHHHHhcCCceEEEe
Q 010599 414 ----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 414 ----~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~------------~~~~~~~~~~~~~w~~~~~ 477 (506)
.+||+|++..+|.++. ..+...++.+|.|+|||||.+++..... ..+++++++ +-.|++...
T Consensus 94 ~~~~~~~D~i~~~~~l~~l~-~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~-~~~~~i~~~ 171 (201)
T d1pjza_ 94 ARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVM-SGNWEVTKV 171 (201)
T ss_dssp HHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTS-CSSEEEEEE
T ss_pred cccccceeEEEEEeeeEecc-hhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHh-CCCcEEEEE
Confidence 7899999999988655 3455789999999999999988843110 345677665 357876554
Q ss_pred ecC
Q 010599 478 DHE 480 (506)
Q Consensus 478 ~~~ 480 (506)
+..
T Consensus 172 ~~~ 174 (201)
T d1pjza_ 172 GGQ 174 (201)
T ss_dssp EES
T ss_pred EEe
Confidence 433
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=5.7e-14 Score=137.26 Aligned_cols=103 Identities=16% Similarity=0.258 Sum_probs=75.5
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----ccc-----eec--ccc---ccCCCCC
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIG-----IYH--DWC---EAFSTYP 413 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~~~-----~~~--~~~---~~~~~~p 413 (506)
+...+.++|||+|||+|.++..|++.+ .+|+++|.|++||+.|.++. ... ... +|- .++ .+.
T Consensus 52 l~~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 127 (292)
T d1xvaa_ 52 LRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV-PAG 127 (292)
T ss_dssp HHHTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS-CCT
T ss_pred hhhcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc-CCC
Confidence 334446789999999999999999986 47999999999999987752 110 110 000 111 123
Q ss_pred CceeEEEEc-cccccccCC----CCHHHHHHHHhhcccCCcEEEEE
Q 010599 414 RTYDLIHAH-GLFSLYKDK----CNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~D~v~~~-~~~~~~~~~----~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++||+|.|. .+|.|+.+. .++..+|+++.|+|||||+|+|.
T Consensus 128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 899999875 578876543 24667999999999999999994
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.42 E-value=8.1e-14 Score=133.24 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=77.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----cceeccccccC---CC-CCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAF---ST-YPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----~~~~~~~~~~~---~~-~p~s~D~v~~~~~ 424 (506)
..+|||||||+|+++..+++.+. .+|+++|.|++||+.|.+|.. ...+...+.+. +. ...+||+|.|..+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred cCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 46899999999999888887553 479999999999999988731 11222222332 22 2379999999999
Q ss_pred cccccC-CCCHHHHHHHHhhcccCCcEEEEEeCh
Q 010599 425 FSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~-~~~~~~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
+++... ..++..+|.++.|+|||||++++....
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 987643 345678999999999999999996543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.40 E-value=1.5e-13 Score=125.02 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHH------------cCCCeEEEEeccccCCC-CCCC
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALE------------RGVPAVIGVLGTIKMPY-ASRA 166 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~------------~~~~~~~~~~d~~~lp~-~~~s 166 (506)
++.+|||+|||+|..+.+|+++| |+++|+|+.++..+..+.... .+....+...+...++. ...+
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 99 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 99 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccc
Confidence 45599999999999999999986 677777766554433222110 12234556666666653 3568
Q ss_pred eeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 167 FDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
||+|++..+++++.++. ..+++++.++|||||++++..
T Consensus 100 ~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 100 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred eeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999998765433 789999999999999988764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.1e-12 Score=123.28 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=84.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHH-----------------Hc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFAL-----------------ER 146 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~-----------------~~ 146 (506)
..+++.+.+.+.. ..+.+|||+|||+|..+.+|+++| |+++|+|+.++..+..+... ..
T Consensus 31 ~~l~~~~~~~l~~--~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 31 QLLKKHLDTFLKG--KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp HHHHHHHHHHHTT--CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred HHHHHHHHHhcCC--CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 3344555555543 345599999999999999999996 67777776554333222111 01
Q ss_pred CCCeEEEEeccccCC-CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 147 GVPAVIGVLGTIKMP-YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 147 ~~~~~~~~~d~~~lp-~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
+..+.+.+.|...++ ...++||+|+...+++|+.++. ..+++++.++|||||++++.+
T Consensus 109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 235667777877664 5678999999999998886655 789999999999999988865
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.35 E-value=1.4e-12 Score=119.55 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=94.2
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eecc-ccccCCCC-CCcee
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHD-WCEAFSTY-PRTYD 417 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~-~~~~~~~~-p~s~D 417 (506)
+..+...+..+|||+|||+|.++.+|++.. .+|+++|.++.+++.|.++ ++-. .+.. .+..+..+ +++||
T Consensus 45 i~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD 121 (194)
T d1dusa_ 45 VENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYN 121 (194)
T ss_dssp HHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEE
T ss_pred HHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCce
Confidence 344556667899999999999999998864 4899999999999999764 2211 1111 12223233 38999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC-hhhHHHHHHHHhcCCceEEEeecCCCCCCCeEEEEEEe
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 494 (506)
+|.++..|++.. ..++.++.++.|+|||||.++|... ....+.+...++..-+.+...... ...+++.++|
T Consensus 122 ~Ii~~~p~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K 193 (194)
T d1dusa_ 122 KIITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp EEEECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred EEEEcccEEecc--hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence 999988876322 1246789999999999999887433 223344445555544444443322 2577888887
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.35 E-value=2.6e-12 Score=116.90 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 010599 84 GADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK 159 (506)
Q Consensus 84 ~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~ 159 (506)
..++....+...+... ++.+|||+|||+|.++..++.. .|+++|+++.++..+..+ ++..++ .+.+.+.++..
T Consensus 17 t~~eir~~il~~l~~~--~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n-~~~~gl~~~v~~~~gda~~ 93 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEPG--KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDAPE 93 (186)
T ss_dssp CCHHHHHHHHHHHCCC--TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCHHH
T ss_pred ChHHHHHHHHHhcCCC--CCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHH-HHHcCCCcceEEEECchhh
Confidence 3355555667777544 4559999999999999999887 489999998777555444 444554 57788888887
Q ss_pred CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+++..+||+|++.....+ ...+++++.+.|||||++++...
T Consensus 94 ~~~~~~~~D~v~~~~~~~~----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 94 ALCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HHTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccccCCcCEEEEeCcccc----chHHHHHHHHHhCcCCEEEEEee
Confidence 7777889999999875433 47889999999999999998753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4e-12 Score=122.93 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=72.1
Q ss_pred eEEeecCcccHHHHHHHhC-----CCeEEEEeecCCCcccHHHHHhcC-----ccceeccc-ccc---------CCCCCC
Q 010599 355 NIMDMNAGFGGFAAAIQSS-----KLWVMNVVPTLADKNTLGVIYERG-----LIGIYHDW-CEA---------FSTYPR 414 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~-----~~~~~~v~~~d~~~~~l~~~~~rg-----~~~~~~~~-~~~---------~~~~p~ 414 (506)
+|||||||+|.++..|++. +.....++++|.|+.|++.+.++- +.....+| +.. .+.-++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 7999999999997776532 223578999999999999998862 11111111 111 122349
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+||+|+|.++|+|. .++..+|.+|.|+|||||.++|.
T Consensus 123 ~fD~I~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 123 KWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEccceecC---CCHHHHHHHHHhhCCCCCEEEEE
Confidence 99999999999854 47899999999999999999885
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=8.3e-13 Score=124.35 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=74.7
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc------cceeccccccCCCCC-CceeEEEEccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYP-RTYDLIHAHGL 424 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~------~~~~~~~~~~~~~~p-~s~D~v~~~~~ 424 (506)
...+|||||||+|.++.+|++.+ ..+|+++|.|+.|++.|.++.- .....++......++ .+||+|..+.+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 35689999999999999998864 3689999999999999988742 111122222223344 89999886544
Q ss_pred cc--cccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 425 FS--LYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~--~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
.. ...|..+.+.++.|+.|+|||||.|++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 33 23345567889999999999999999843
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.31 E-value=3e-12 Score=120.45 Aligned_cols=124 Identities=12% Similarity=0.039 Sum_probs=88.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC----c-cceeccccccCCCC-CCceeEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTY-PRTYDLIH 420 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg----~-~~~~~~~~~~~~~~-p~s~D~v~ 420 (506)
.+...+..+|||+|||+|.++.+|++.. ....|+++|.|+.|++.+.++. . ..+..+ +.....+ +.++|++.
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d-~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGD-ANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECC-TTCGGGGTTTCCCEEE
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEe-eccCcccccccceeEE
Confidence 3444556789999999999999999852 2358999999999999888762 2 222222 2222223 36777766
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh----------hhHHHHHHHHhcCCceEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~----------~~~~~~~~~~~~~~w~~~ 475 (506)
+.+.+. +..+.+.++.++.|+|||||.++|.+.. ...+++.+.+++.++++.
T Consensus 147 i~~~~~---~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv 208 (230)
T d1g8sa_ 147 IYEDVA---QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV 208 (230)
T ss_dssp EEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred eecccc---chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 655555 5567888999999999999999996422 144667777888899855
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.5e-13 Score=128.47 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=80.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCe----------------
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPA---------------- 150 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~---------------- 150 (506)
..+.+.+.....++.+|||||||+|.++..++.. .|+++|+|+.++..++..... .....
T Consensus 39 ~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 117 (257)
T d2a14a1 39 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK-EPGAYDWTPAVKFACELEGNS 117 (257)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHTTCG
T ss_pred HHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh-ccccchhhhHHHHHHHhcccc
Confidence 4455554433445679999999999988777765 489999998887665543322 11110
Q ss_pred ---------------EEEEe----ccccCCCCCCCeeEEEEcCcccccCCC---hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 151 ---------------VIGVL----GTIKMPYASRAFDMAHCSRCLIPWGAN---DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 151 ---------------~~~~~----d~~~lp~~~~sfDlV~~~~~l~~~~~~---~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
..... +....+++.++||+|++.++++|.... ...+++++.++|||||+|++.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 118 GRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp GGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred chHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 01111 112346778999999999999887643 357899999999999999998643
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=9.8e-13 Score=128.33 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=77.3
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCC-----eEEEEeccc--
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVP-----AVIGVLGTI-- 158 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~-----~~~~~~d~~-- 158 (506)
+.+.+.+.+... .+.+|||||||+|.++..|++++ |+++|+|+.|+..+...... ++.. ..+...+..
T Consensus 44 ~~~~l~~~l~~~--~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~ 120 (292)
T d1xvaa_ 44 YKAWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWN-RRKEPAFDKWVIEEANWLTL 120 (292)
T ss_dssp HHHHHHHHHHHT--TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTTSHHHHTCEEEECCGGGH
T ss_pred HHHHHHHHhhhc--CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHh-cccccccceeeeeecccccc
Confidence 334444555322 34589999999999999999984 88999998887655443332 2222 233333432
Q ss_pred --cCCCCCCCeeEEEEcC-cccccCC------ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 159 --KMPYASRAFDMAHCSR-CLIPWGA------NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 159 --~lp~~~~sfDlV~~~~-~l~~~~~------~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+|. .++||+|+|.. ++.|+.. +...+|+++.|+|||||+|++...
T Consensus 121 ~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 121 DKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 2333 46899999864 6667543 235799999999999999999754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.28 E-value=3.3e-12 Score=117.94 Aligned_cols=99 Identities=10% Similarity=0.164 Sum_probs=78.2
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEEcCcc
Q 010599 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKMP--YASRAFDMAHCSRCL 176 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlV~~~~~l 176 (506)
..|||||||+|.++..|++. .++++|+++..+..+... +.+.++ ++.+..+|+..+. ++++++|.|++.+..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~-~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK-VKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHH-HHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 48999999999999999876 488999998777655544 444454 4777888887665 789999999987765
Q ss_pred cccCCCh--------HHHHHHHHHhcCCCeEEEEEc
Q 010599 177 IPWGAND--------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~--------~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|.... ..++.++.|+|||||.|++.+
T Consensus 110 -P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 554432 379999999999999999975
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=7.2e-12 Score=116.52 Aligned_cols=109 Identities=9% Similarity=-0.008 Sum_probs=81.1
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
.....+.+.+.+.+ +.+|||||||+|+++..|++. .|+++|+++..+..+..+.......+..+...|....+
T Consensus 62 ~~~a~~l~~l~l~~--g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~ 139 (213)
T d1dl5a1 62 SLMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (213)
T ss_dssp HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred hhhHHHHHhhhccc--cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence 34455677775544 459999999999999988764 38999999877766655544433345666677777777
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.+++||+|++..++.+.. .++.+.|||||.|++..
T Consensus 140 ~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred ccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 7788999999998876642 45778899999999864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.9e-12 Score=123.99 Aligned_cols=102 Identities=10% Similarity=-0.032 Sum_probs=72.1
Q ss_pred CCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHHcCCC-eE--EEEeccc------cCCCC
Q 010599 103 VRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALERGVP-AV--IGVLGTI------KMPYA 163 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~dl~~~~~~~a~~~~~~-~~--~~~~d~~------~lp~~ 163 (506)
..+|||||||+|.++..|+.. .++++|+|+.++..+....+.....+ +. +...+.. ..+++
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 347999999999988877553 25677777666654444333322222 22 2222221 24567
Q ss_pred CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 164 SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 164 ~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+++||+|+|..+++| .+++..+|+++.++|+|||++++..+
T Consensus 121 ~~~fD~I~~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceeEEEEccceec-CCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 899999999999976 46789999999999999999998764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.26 E-value=7.2e-12 Score=115.61 Aligned_cols=118 Identities=9% Similarity=0.008 Sum_probs=84.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC----CCC-CceeEEEEccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS----TYP-RTYDLIHAHGL 424 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~----~~p-~s~D~v~~~~~ 424 (506)
..|||||||+|.++..|++.. ...+++++|.++.++..|.++ |+ .++..++.++. .++ +++|.|+..+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence 359999999999999998752 236899999999999876554 44 23333333321 244 99999998666
Q ss_pred cccccC-----CCCHHHHHHHHhhcccCCcEEEE-EeChhhHHHHHHHHhcCCce
Q 010599 425 FSLYKD-----KCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 425 ~~~~~~-----~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~~w~ 473 (506)
..+... |---+..|.+++|+|||||.|+| +|..++.+.+...+......
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~ 163 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLL 163 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCc
Confidence 653321 11125799999999999999988 57777888888876655544
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.1e-12 Score=121.59 Aligned_cols=113 Identities=14% Similarity=0.041 Sum_probs=79.1
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc--cC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~--~l 160 (506)
..+.+.+++.+. ..+.+|||||||+|..+..+++. .++++|+++.++..+. +.+...+..+.....+.. ..
T Consensus 40 ~~~~~~la~~~~---~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~ 115 (229)
T d1zx0a1 40 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAP 115 (229)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhc---cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHH-HHhhhccccccccccccccccc
Confidence 455566666663 23458999999999999999876 4788999886664443 223333444555555543 34
Q ss_pred CCCCCCeeEEEE-----cCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 161 PYASRAFDMAHC-----SRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 161 p~~~~sfDlV~~-----~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
++++++||.|+. ...++|+ .+...+++++.|+|||||+|++.
T Consensus 116 ~~~~~~fD~i~fD~~~~~~~~~~~-~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 116 TLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccceeecccccccccccc-cCHHHHHHHHHHHcCCCcEEEEE
Confidence 577889999984 3444443 34578999999999999999874
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.25 E-value=6.7e-12 Score=120.09 Aligned_cols=132 Identities=20% Similarity=0.187 Sum_probs=94.7
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCCCceeE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYPRTYDL 418 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p~s~D~ 418 (506)
++..+...+.++|||||||+|.++..|+++. ..++++.+|. +++++.+.++ |+...+.....+ +...|..||+
T Consensus 73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~ 150 (256)
T d1qzza2 73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADV 150 (256)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEE
T ss_pred HHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchh
Confidence 3344556678899999999999999998752 2368899998 4888877654 432222222223 3345678999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---------------------------hHHHHHHHHhcCC
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------------------EIIKVKKIVGGMR 471 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------------------~~~~~~~~~~~~~ 471 (506)
|++.++|+++.+ .+...+|.++.|+|||||+|+|.|... ..++++++++..+
T Consensus 151 v~~~~vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AG 229 (256)
T d1qzza2 151 VLLSFVLLNWSD-EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAG 229 (256)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTT
T ss_pred hhccccccccCc-HHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCC
Confidence 999999985431 234578999999999999999976421 2467889999999
Q ss_pred ceEEEee
Q 010599 472 WDTKMVD 478 (506)
Q Consensus 472 w~~~~~~ 478 (506)
|++....
T Consensus 230 f~~~~~~ 236 (256)
T d1qzza2 230 LALASER 236 (256)
T ss_dssp EEEEEEE
T ss_pred CceeEEE
Confidence 9876543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.25 E-value=1.9e-11 Score=113.31 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=70.7
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCCC---ceeEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPR---TYDLIH 420 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p~---s~D~v~ 420 (506)
+...+..+|||+|||+|+++.+|++.- ....|+++|.|+.|++.+.++ +.+..+..-+...+.++. .+|+|+
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 444455689999999999999998742 124799999999999977665 322232222233333444 444544
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+ ...+..+...+|.|+.|+|||||+++|.+
T Consensus 131 ~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 131 Q-----DIAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp E-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred e-----cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 3 22345577889999999999999999965
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.24 E-value=1.1e-11 Score=112.68 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=89.2
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eeccccccCCCCCCcee
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFSTYPRTYD 417 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~~~~~~~~~~p~s~D 417 (506)
+..+...+..+|||+|||+|.++..|+... ..|+++|.+++|++.|+++ |+.. ..+.-..++..-..+||
T Consensus 26 l~~l~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D 102 (186)
T d1l3ia_ 26 MCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID 102 (186)
T ss_dssp HHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred HHhcCCCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence 334556677789999999999999998864 4799999999999999875 3322 22222222222338999
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCceEE
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~~~ 475 (506)
+|.+.... ..++.++.++.+.|||||++++.... +....+.+.+...+|...
T Consensus 103 ~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 103 IAVVGGSG------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp EEEESCCT------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEeCcc------ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 99985432 35678999999999999999998753 455667777777777544
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=2.7e-11 Score=115.77 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=84.6
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKMP 161 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~---~~~~~~~~~d~~~lp 161 (506)
..|..++.+.+ +.+|||+|||+|+++..|+.. .++++|+++.++..+..++.... ..+..+.+.|....+
T Consensus 86 s~Ii~~l~i~P--G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 86 AQIVHEGDIFP--GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHhCCCC--CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 45666675554 459999999999999999875 38899998866655554433321 235778888888889
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+++++||.|++ + .+++..++.++.++|||||.+++..|..
T Consensus 164 ~~~~~fDaV~l-----d-lp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----D-MLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----E-SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCcceEEE-----e-cCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 99999999986 3 2567789999999999999999987744
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=1.7e-11 Score=114.79 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=91.6
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc---ccCCCCCCceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC---EAFSTYPRTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~---~~~~~~p~s~D~v 419 (506)
.+...+..+|||+|||+|+++.+|++.-.....|+++|.++.|++.+.++ +.+..+..-. +.++.....+|+|
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i 147 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEE
Confidence 34445667899999999999999987421235899999999999977665 2221111111 1222233789998
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC----------hhhHHHHHHHHhcCCceEE-EeecCCCCCCCeE
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE----------VDEIIKVKKIVGGMRWDTK-MVDHEDGPLVPEK 488 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~----------~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~ 488 (506)
++. +. +......++.++.|+|||||.++|... .....+++++++ -+++.. .++.+ .-..+-.
T Consensus 148 ~~d--~~---~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~-~gf~iie~i~L~-p~~~~H~ 220 (227)
T d1g8aa_ 148 FED--VA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELS-EYFEVIERLNLE-PYEKDHA 220 (227)
T ss_dssp EEC--CC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHH-TTSEEEEEEECT-TTSSSEE
T ss_pred EEE--cc---ccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHH-cCCEEEEEEcCC-CCCCceE
Confidence 873 22 344567799999999999999999632 123345555544 477744 33332 1112457
Q ss_pred EEEEEec
Q 010599 489 ILVAVKQ 495 (506)
Q Consensus 489 ~l~~~k~ 495 (506)
++++||+
T Consensus 221 ~vv~rK~ 227 (227)
T d1g8aa_ 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 8889886
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.23 E-value=1.6e-11 Score=117.09 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=76.5
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~ 164 (506)
.+.+.++.. ...+|||||||+|.++..++++ .++++|+ +.++..+....+ +.+. .+.+...|... +. .
T Consensus 71 ~~~~~~d~~--~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~rv~~~~~D~~~-~~-~ 144 (253)
T d1tw3a2 71 APAAAYDWT--NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK-DEGLSDRVDVVEGDFFE-PL-P 144 (253)
T ss_dssp HHHHHSCCT--TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH-HTTCTTTEEEEECCTTS-CC-S
T ss_pred HHHhhcCCc--cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHH-Hhhcccchhhccccchh-hc-c
Confidence 344444433 3459999999999999999876 3566776 445544444333 3333 46777777643 22 3
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+||+|++..+++||.++. ..+|+++.++|||||+|++..
T Consensus 145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence 5799999999998885433 578999999999999999865
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.20 E-value=3.2e-11 Score=111.21 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=77.9
Q ss_pred CEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEEcCccc
Q 010599 104 RTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHCSRCLI 177 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~~~~l~ 177 (506)
..|||||||+|.++..+++. .++++|+++..+..+..+.....-.++.+...|+..+. ++++++|.|++.+.-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd- 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD- 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc-
Confidence 48999999999999999876 48899998877765554443333334777788877664 788999999987653
Q ss_pred ccCCCh--------HHHHHHHHHhcCCCeEEEEEcC
Q 010599 178 PWGAND--------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 178 ~~~~~~--------~~~l~e~~rvLkPGG~li~~~p 205 (506)
+|.... ..+|+++.++|||||.|++.+.
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 665432 4799999999999999999763
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.18 E-value=1.7e-11 Score=113.52 Aligned_cols=100 Identities=12% Similarity=0.016 Sum_probs=71.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC---CCeeEEEE
Q 010599 100 NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS---RAFDMAHC 172 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~---~sfDlV~~ 172 (506)
-.++.+|||+|||+|..+..|++. .|+++|+++.++..+. +.+..++ .+.+...+....+... ..+|+|++
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEEEEEe
Confidence 345569999999999999998874 3999999998886544 4444443 5666666765544333 35666655
Q ss_pred cCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
. +.| ..+...++.++.++|||||++++..
T Consensus 132 ~--~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 132 D--IAQ-KNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp C--CCS-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--ccC-hhhHHHHHHHHHHHhccCCeEEEEE
Confidence 3 223 3445789999999999999999874
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.18 E-value=3.4e-11 Score=115.04 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=74.3
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKMPYAS 164 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~lp~~~ 164 (506)
.+.+.++.. ..++|||||||+|.++..|+++ .++++|+ +..+..+....+ +.+. .+.+...+... +.+
T Consensus 72 ~~~~~~d~~--~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~-~~~~~~ri~~~~~d~~~-~~p- 145 (256)
T d1qzza2 72 APADAYDWS--AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLP- 145 (256)
T ss_dssp HHHHTSCCT--TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCS-
T ss_pred HHHhcCCCc--cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHh-hcCCcceeeeeeeeccc-ccc-
Confidence 344444333 3458999999999999999986 3677786 434433332333 3333 24555555432 444
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+||+|++.+++|+|.++. ..+|+++.++|||||.|++..
T Consensus 146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence 4699999999999986533 578999999999999999875
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.3e-11 Score=118.55 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=77.7
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC------------------
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV------------------ 148 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~------------------ 148 (506)
..+.+.+......+.+|||||||+|.+...++.. .|+++|+|+.++..+........+.
T Consensus 42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 121 (263)
T d2g72a1 42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGE 121 (263)
T ss_dssp HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCC
T ss_pred HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccc
Confidence 4445544333445679999999999887655543 4899999998776554322111100
Q ss_pred ------------CeEEEEeccc------cCCCCCCCeeEEEEcCcccccCCCh---HHHHHHHHHhcCCCeEEEEEcC
Q 010599 149 ------------PAVIGVLGTI------KMPYASRAFDMAHCSRCLIPWGAND---GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 149 ------------~~~~~~~d~~------~lp~~~~sfDlV~~~~~l~~~~~~~---~~~l~e~~rvLkPGG~li~~~p 205 (506)
-......|.. ..+++.++||+|++.++++|...+. ..+++++.++|||||+|++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 122 CWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp CHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 0011222331 2234567899999999998876554 6789999999999999999764
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.5e-11 Score=115.80 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=82.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHc--CCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~--~~~~~~~~~d~~~l 160 (506)
+.|.++|.+..... ++.+|||||||+|.++..+++.| |+++|.++.+. .++ +..... ...+.+...+..++
T Consensus 21 ~~y~~ai~~~~~~~--~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~-~~~~~~~~~~~i~~~~~~~~~l 96 (311)
T d2fyta1 21 ESYRDFIYQNPHIF--KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAM-DIIRLNKLEDTITLIKGKIEEV 96 (311)
T ss_dssp HHHHHHHHHCGGGT--TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHH-HHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhccccC--CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHH-HHHHHhCCCccceEEEeeHHHh
Confidence 56666676554322 35589999999999999998863 89999988543 222 233333 33477788889999
Q ss_pred CCCCCCeeEEEEcCcccccCCCh--HHHHHHHHHhcCCCeEEEE
Q 010599 161 PYASRAFDMAHCSRCLIPWGAND--GRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~~~--~~~l~e~~rvLkPGG~li~ 202 (506)
+++..+||+|+|....++..... ..++....++|||||+++-
T Consensus 97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99999999999976654433322 5777888999999999974
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.15 E-value=2.8e-11 Score=111.53 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=84.1
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc--cceeccccccCC-CCC-CceeEEEEcccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS-TYP-RTYDLIHAHGLF 425 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~--~~~~~~~~~~~~-~~p-~s~D~v~~~~~~ 425 (506)
..|||||||+|.++..|++.. ...+++++|.++.++..|.++ ++ +..++.-++.+. .+| .++|.|++..--
T Consensus 33 plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 359999999999999998742 236899999999999987665 33 122222122232 245 999999984433
Q ss_pred cc-----ccCCCCHHHHHHHHhhcccCCcEEEE-EeChhhHHHHHHHHhcCCceEE
Q 010599 426 SL-----YKDKCNIEDILLEMDRILRPEGAIII-RDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 426 ~~-----~~~~~~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
.+ ...|---...|.++.|+|||||.|+| +|..++.+.+...+....+...
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 32 11122226799999999999999988 6777777777777666676644
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.15 E-value=3.2e-11 Score=113.31 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEEEEcCc
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
.++.+|||||||+|.++..|++. .|.++|+|+.++..+. +.+..+ ........+... .++.+..+|++++...
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~~-~ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAER-ENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhhh-cccceEEEeeccCcccccccceeEEeecc
Confidence 45569999999999999999875 3899999998775443 333333 334445555433 2345566776665544
Q ss_pred ccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 176 LIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++ .++...++.++.+.|||||+++++.
T Consensus 151 ~~~-~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 151 VAQ-PNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CCS-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-hHHHHHHHHHHHHhcccCceEEEEe
Confidence 544 4556889999999999999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=9.4e-11 Score=109.63 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=79.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-----CCCeEEEEecccc
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-----GVPAVIGVLGTIK 159 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~-----~~~~~~~~~d~~~ 159 (506)
..+.+.|.....++.+|||||||+|+.+..|++. .|+++|+++.++..+...+.+.. .....+...|...
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 4556666333345569999999999998888764 48999998876665554443321 2346677788888
Q ss_pred CCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 160 MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
.+.+.++||.|++..++.+. + .++.+.|||||+|++...
T Consensus 144 ~~~~~~~fD~I~~~~~~~~i-p------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVV-P------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSC-C------HHHHHTEEEEEEEEEEES
T ss_pred ccchhhhhhhhhhhcchhhc-C------HHHHhhcCCCcEEEEEEc
Confidence 77788899999999887553 2 467899999999998653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=9.9e-11 Score=115.24 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=81.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.++|.+.... .++.+|||||||+|.++..+++.| |+++|.++. . ..+.+.+...+. .+.+...+...+
T Consensus 19 ~~y~~ai~~~~~~--~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~-~~a~~~~~~n~~~~~v~~~~~~~~~~ 94 (316)
T d1oria_ 19 LTYRNSMFHNRHL--FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-S-DYAVKIVKANKLDHVVTIIKGKVEEV 94 (316)
T ss_dssp HHHHHHHHTCHHH--HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-H-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhcccc--CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-H-hhhhhHHHHhCCccccceEeccHHHc
Confidence 4455555433211 134589999999999999888863 889999874 3 333344444443 377788889999
Q ss_pred CCCCCCeeEEEEcCcccccCC--ChHHHHHHHHHhcCCCeEEEE
Q 010599 161 PYASRAFDMAHCSRCLIPWGA--NDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~--~~~~~l~e~~rvLkPGG~li~ 202 (506)
+++.++||+|++..+.+.... ....++..+.|+|||||.++-
T Consensus 95 ~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 95 ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 999999999999766544332 337899999999999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=9.6e-11 Score=115.93 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=80.9
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~l 160 (506)
..|.+.|.+.... .++.+|||||||+|.++..+++.+ |+++|.++ ++ ..+.+.+...+. .+.+...+...+
T Consensus 24 ~~y~~aI~~~~~~--~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l 99 (328)
T d1g6q1_ 24 LSYRNAIIQNKDL--FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHH--HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhcccc--CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhc
Confidence 4454555443321 234599999999999999888874 88999886 33 333344444443 467788889999
Q ss_pred CCCCCCeeEEEEcCcccccCC--ChHHHHHHHHHhcCCCeEEEE
Q 010599 161 PYASRAFDMAHCSRCLIPWGA--NDGRYMIEVDRVLRPGGYWVL 202 (506)
Q Consensus 161 p~~~~sfDlV~~~~~l~~~~~--~~~~~l~e~~rvLkPGG~li~ 202 (506)
++++++||+|++..+..+... ....++.++.|+|||||.++=
T Consensus 100 ~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 999999999999766544332 337889999999999999863
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=4.2e-11 Score=111.23 Aligned_cols=103 Identities=15% Similarity=0.026 Sum_probs=72.0
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC---ccceeccccccCC-CCC--Ccee
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEAFS-TYP--RTYD 417 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg---~~~~~~~~~~~~~-~~p--~s~D 417 (506)
++..+...+..+|||+|||+|.+++.|++.......|+++|.++++++.|.++. .+......+.+.. .++ ++||
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD 146 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYD 146 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchh
Confidence 444455566779999999999999988763212257999999999999998862 1222222222222 223 7899
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|++..++.+.. .++.++|||||+|++-.
T Consensus 147 ~I~~~~~~~~~p---------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 147 VIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred hhhhhccHHHhH---------HHHHHhcCCCcEEEEEE
Confidence 999988876432 46778999999999843
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.08 E-value=1.7e-10 Score=109.37 Aligned_cols=107 Identities=8% Similarity=0.098 Sum_probs=74.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERG-VPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~-~~~~~~~~d~~~lp~~~ 164 (506)
.|...+.+.+ +.+|||+|||+|.++..|++. .++++|+++..+..+..++....+ .++.+...|.... +++
T Consensus 76 ~Ii~~l~i~p--G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~ 152 (250)
T d1yb2a1 76 YIIMRCGLRP--GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISD 152 (250)
T ss_dssp -----CCCCT--TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCS
T ss_pred HHHHHcCCCC--cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccc
Confidence 3455555544 459999999999999998864 388999987655544444433222 3466777776554 567
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
++||+|++. .+++..++.++.++|||||+|++..|.
T Consensus 153 ~~fD~V~ld------~p~p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 153 QMYDAVIAD------IPDPWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp CCEEEEEEC------CSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred ceeeeeeec------CCchHHHHHHHHHhcCCCceEEEEeCC
Confidence 899999874 234567899999999999999998774
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.07 E-value=8.4e-11 Score=111.50 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=82.4
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCC-C-CCceeEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-Y-PRTYDLIH 420 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~-~-p~s~D~v~ 420 (506)
.+.-.+..+|||+|||+|.++.+|+..-.....|+++|.++++++.|.++ +....+.....++.. + +.+||.|+
T Consensus 80 ~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ 159 (250)
T d1yb2a1 80 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVI 159 (250)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEE
T ss_pred HcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeee
Confidence 34445567899999999999988876311124799999999999999875 222222222233332 3 38999999
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHhcCCce
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD 473 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~~~~w~ 473 (506)
. +-.++..+|.++.|+|||||+|++.-+. ..+.++-+.++..+|.
T Consensus 160 l--------d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 160 A--------DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp E--------CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred e--------cCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence 7 3445667999999999999999997553 3344555556666775
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=6.5e-11 Score=113.07 Aligned_cols=121 Identities=11% Similarity=0.058 Sum_probs=82.7
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc------CccceeccccccCC--CC-CCc
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER------GLIGIYHDWCEAFS--TY-PRT 415 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r------g~~~~~~~~~~~~~--~~-p~s 415 (506)
+..+...+..+|||+|||+|.++.+|+..-.....|+++|.++++++.|+++ +....++..+.++. .+ +++
T Consensus 89 i~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~ 168 (264)
T d1i9ga_ 89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS 168 (264)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTC
T ss_pred HHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCC
Confidence 3344555667899999999999999986311225799999999999999874 11223333333332 23 499
Q ss_pred eeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhH-HHHHHHHhcCCce
Q 010599 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEI-IKVKKIVGGMRWD 473 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~-~~~~~~~~~~~w~ 473 (506)
||.|+. +-.++..++.++.|+|||||.+++-.+. +.+ .-++.+-...+|.
T Consensus 169 fDaV~l--------dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 169 VDRAVL--------DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp EEEEEE--------ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred cceEEE--------ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 999987 4556678999999999999999996653 222 3333332344574
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=1.6e-10 Score=110.71 Aligned_cols=121 Identities=13% Similarity=0.087 Sum_probs=86.0
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC-CceeE
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDL 418 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p-~s~D~ 418 (506)
+..++-.+..+|||+|||+|.++.+|+..-.....|+++|.+++|++.|.++ |+......-..++ ..++ ..||.
T Consensus 96 i~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~ 175 (266)
T d1o54a_ 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDA 175 (266)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEE
T ss_pred HHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceee
Confidence 3344555667899999999999999976322235899999999999998775 3322222112222 1234 78998
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC-hhhHHHHHHHHhcCCce
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWD 473 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~-~~~~~~~~~~~~~~~w~ 473 (506)
|+. +-.++..+|.++.|+|||||.+++--+ .+.+.++.+.++..+|.
T Consensus 176 V~~--------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 176 LFL--------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp EEE--------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred eEe--------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 876 566778899999999999999998654 34455566667777885
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=4.5e-10 Score=107.51 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=77.5
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC-C-eEEEEeccccCCC
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV-P-AVIGVLGTIKMPY 162 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~-~-~~~~~~d~~~lp~ 162 (506)
..|..++.+.+ +.+|||+|||+|.++..|+.. .++++|+++.++..+..+.. ..+. . ..+...|. ...+
T Consensus 93 ~~Ii~~l~i~p--G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~-~~g~~~~v~~~~~d~-~~~~ 168 (266)
T d1o54a_ 93 SFIAMMLDVKE--GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT-KWGLIERVTIKVRDI-SEGF 168 (266)
T ss_dssp HHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH-HTTCGGGEEEECCCG-GGCC
T ss_pred HHHHHhhCCCC--CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhccccCcEEEeccc-cccc
Confidence 34667776654 459999999999999999864 38999999877765554443 3343 2 33333333 3346
Q ss_pred CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 163 ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 163 ~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....||.|+. + .+++..++.++.++|||||.|++..|..
T Consensus 169 ~~~~~D~V~~-----d-~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 169 DEKDVDALFL-----D-VPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp SCCSEEEEEE-----C-CSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred cccceeeeEe-----c-CCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 6778999875 3 3567889999999999999999887643
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=2.7e-10 Score=112.65 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=73.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHh----cCccc---eeccccccCCCCCCceeEEEEcccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIG---IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~----rg~~~---~~~~~~~~~~~~p~s~D~v~~~~~~ 425 (506)
..+|||||||+|.++..+++.|. -.|+++|.+ .|+..|++ .++.. .++.-.+.++..+.+||+|.+..++
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s-~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCC-HHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 45799999999999988888763 379999998 56665544 34432 2332234444344899999998888
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAII 452 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~i 452 (506)
..+.+...++.++.+++|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 877777788999999999999999886
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.5e-10 Score=111.98 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=73.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhcCccc---eeccccccCCCCCCceeEEEEcccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLIG---IYHDWCEAFSTYPRTYDLIHAHGLF 425 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~rg~~~---~~~~~~~~~~~~p~s~D~v~~~~~~ 425 (506)
+..+|||||||+|.++..+++.|. ..|+++|.++.|+. .+.+.+... ..+.-.+.++..+..||+|.+..+.
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 456799999999999998888763 47999999987764 333334422 3332234444444899999997777
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++......++.++..++|+|||||.++-
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccHHHHHHHHhcCCCCcEEec
Confidence 7666555577889999999999999874
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.3e-11 Score=116.79 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=85.9
Q ss_pred CChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH--H-------c
Q 010599 80 QFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL--E-------R 146 (506)
Q Consensus 80 ~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~--~-------~ 146 (506)
.++.....++..+.+.+.+.+ +.+|||||||+|.++..++.. .++|+|+++.++..+...... . .
T Consensus 131 ~~~e~~~~~~~~~~~~~~l~~--~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~ 208 (328)
T d1nw3a_ 131 VYGETSFDLVAQMIDEIKMTD--DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 208 (328)
T ss_dssp CCCCCCHHHHHHHHHHSCCCT--TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred chhhhHHHHHHHHHHHcCCCC--CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 344444556677778876554 449999999999999888754 488999998766544332221 1 2
Q ss_pred CCCeEEEEeccccCCCCCCCe--eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 147 GVPAVIGVLGTIKMPYASRAF--DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 147 ~~~~~~~~~d~~~lp~~~~sf--DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..++.+..+|+..+++.+..| |+|+++. +.+ .++....|.|+.|+|||||.++...
T Consensus 209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f-~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 209 HAEYTLERGDFLSEEWRERIANTSVIFVNN-FAF-GPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCSEEEECC-TTT-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CCceEEEECcccccccccccCcceEEEEcc-eec-chHHHHHHHHHHHhCCCCcEEEEec
Confidence 345788889998888776555 6677654 434 3556789999999999999998754
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=3.3e-10 Score=111.42 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=71.9
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHH---HHHhcCccceecc---ccccCCCCCCceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLIGIYHD---WCEAFSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~---~~~~rg~~~~~~~---~~~~~~~~p~s~D~v~~~~~~~ 426 (506)
..+|||||||+|.++..+++.|. -.|+++|.++.+.. .+...++...+.. -.++++..+++||+|.+..+..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 46799999999999988888763 36899999854432 2222354332322 2344443448999999977777
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.+.+...++.++.+++|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 666667889999999999999999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.99 E-value=6.4e-10 Score=103.60 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=73.9
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
..+.+.+.+.+ +.+|||||||+|+++..|+.. .|+++|+++.....+.... ....++.+...|........+.|
T Consensus 60 a~ml~~L~l~~--g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~--~~~~nv~~~~~d~~~g~~~~~pf 135 (224)
T d1vbfa_ 60 IFMLDELDLHK--GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL--SYYNNIKLILGDGTLGYEEEKPY 135 (224)
T ss_dssp HHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH--TTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhhhcc--cceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHH--hcccccccccCchhhcchhhhhH
Confidence 34667775554 449999999999999988876 4888998875554443222 23345677777765544456789
Q ss_pred eEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 168 DMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 168 DlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|.|++..++.+.+ ..+.+.|||||+|++-.
T Consensus 136 D~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 136 DRVVVWATAPTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp EEEEESSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred HHHHhhcchhhhh-------HHHHHhcCCCCEEEEEE
Confidence 9999988775532 45678899999999853
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=7.6e-10 Score=103.38 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccc---cCCCCCCCeeEEE
Q 010599 100 NGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KMPYASRAFDMAH 171 (506)
Q Consensus 100 ~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~---~lp~~~~sfDlV~ 171 (506)
..++.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+..++ .......+.. ..+.....+|+|+
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~~-~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEERR-NIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSCT-TEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhcC-CceEEEEECCCcccccccccceEEEE
Confidence 345669999999999999999875 3899999997775443 3443332 3444445542 3344557899998
Q ss_pred EcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 172 CSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... + .++...++.++.+.|||||+++++.
T Consensus 149 ~d~~--~-~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 149 EDVA--Q-PTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ECCC--S-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcc--c-cchHHHHHHHHHHhcccCCeEEEEE
Confidence 8532 2 3445789999999999999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=5.2e-10 Score=104.48 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=65.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cc----cceeccccccCCC-CC--CceeEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL----IGIYHDWCEAFST-YP--RTYDLI 419 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~----~~~~~~~~~~~~~-~p--~s~D~v 419 (506)
.+..+|||+|||+|.+++.|++.......|+++|.++++++.|.++ ++ .......+.+... ++ +.||.|
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I 154 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 154 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence 4456899999999999888876311225799999999999988664 21 1112222222221 22 799999
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+++.++.+. ..++.+.|||||++++-
T Consensus 155 ~~~~~~~~i---------p~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 155 HVGAAAPVV---------PQALIDQLKPGGRLILP 180 (224)
T ss_dssp EECSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred hhhcchhhc---------CHHHHhhcCCCcEEEEE
Confidence 997777633 24678999999999984
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=8e-10 Score=108.58 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=74.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--------------cccee----cccccc
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--------------LIGIY----HDWCEA 408 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--------------~~~~~----~~~~~~ 408 (506)
.++-.+..+|||+|||+|.++.+|+..-.....|+++|.++++++.|++.- ....+ .+.++.
T Consensus 93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~ 172 (324)
T d2b25a1 93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 172 (324)
T ss_dssp HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence 344445668999999999999999863112257999999999999987641 01111 112222
Q ss_pred CCCCC-CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh-hhHHHHHHHHh--cCCceEE
Q 010599 409 FSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVG--GMRWDTK 475 (506)
Q Consensus 409 ~~~~p-~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-~~~~~~~~~~~--~~~w~~~ 475 (506)
...++ .+||.|+. +-.++..+|.++.|+|||||.|++--+. ..+.++-+.++ +++|...
T Consensus 173 ~~~~~~~~fD~V~L--------D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 173 TEDIKSLTFDAVAL--------DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp C-------EEEEEE--------CSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCCcceEee--------cCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence 22233 78999986 3334445899999999999999985432 22222222233 5678633
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=3.1e-09 Score=104.29 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=74.8
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHc-----------CCCeEEEE
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALER-----------GVPAVIGV 154 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~-----------~~~~~~~~ 154 (506)
.|..++.+.+ +.+|||+|||+|+++..|+.. .|+++|+++.++..+..++.... ...+.+..
T Consensus 89 ~Il~~l~i~p--G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 89 MILSMMDINP--GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhCCCC--CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 4556665554 459999999999999999874 38999998876665555443311 12356666
Q ss_pred eccccCC--CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 155 LGTIKMP--YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 155 ~d~~~lp--~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
.|..... +++.+||.|+.- + +++..++.++.++|||||.|++-.|..
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD-~-----p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALD-M-----LNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp SCTTCCC-------EEEEEEC-S-----SSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cchhhcccccCCCCcceEeec-C-----cCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 7765543 457789999863 1 334568999999999999999887644
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=1.4e-09 Score=109.64 Aligned_cols=107 Identities=8% Similarity=0.062 Sum_probs=72.4
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcCc------------cc-eeccccccC
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL------------IG-IYHDWCEAF 409 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg~------------~~-~~~~~~~~~ 409 (506)
++..+.-++..+|||+|||+|.++..++.. + +..|+|+|.++.|++.|.++.- .+ ........+
T Consensus 208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g--~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f 285 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 285 (406)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech
Confidence 344444455668999999999998888753 2 2479999999999999987631 00 000011222
Q ss_pred CC---CC---CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 410 ST---YP---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 410 ~~---~p---~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
-. ++ ...|+|++++.. +..++...|.||.|+|||||++|+.+.
T Consensus 286 ~~~~~~d~~~~~adVV~inn~~----f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 286 VDNNRVAELIPQCDVILVNNFL----FDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp TTCHHHHHHGGGCSEEEECCTT----CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred hhccccccccccceEEEEeccc----CchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 11 11 456788874422 334678899999999999999998664
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.82 E-value=6.5e-09 Score=96.04 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=75.9
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
....+.+.+.+.++ .+|||||||+|+.++.|+.. .|+++|+.+.....+..........++.+...|........
T Consensus 66 ~~a~ml~~L~l~~g--~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~ 143 (215)
T d1jg1a_ 66 MVAIMLEIANLKPG--MNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 143 (215)
T ss_dssp HHHHHHHHHTCCTT--CCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred hHHHHHHhhccCcc--ceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence 33456667755544 49999999999999988764 48899998754444443333333345777777876655567
Q ss_pred CCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 165 RAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.||.|++..+..+. + ..+...|||||++++..
T Consensus 144 ~pfD~Iiv~~a~~~i---p----~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 144 APYDVIIVTAGAPKI---P----EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp CCEEEEEECSBBSSC---C----HHHHHTEEEEEEEEEEE
T ss_pred CcceeEEeecccccC---C----HHHHHhcCCCCEEEEEE
Confidence 889999998776443 2 34567799999999864
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=9.5e-09 Score=98.32 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~ 157 (506)
...+..++...+.+. ..+.+|||+|||+|..+..++.. .++++|+|+..+.-+. +.+...+.. +.+...|.
T Consensus 92 peTE~lv~~~l~~~~---~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~ 167 (274)
T d2b3ta1 92 PDTECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDW 167 (274)
T ss_dssp TTHHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCST
T ss_pred cchhhhhhhHhhhhc---ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeeccc
Confidence 344666666666553 23458999999999999888764 5899999886664444 444455554 67776665
Q ss_pred ccCCCCCCCeeEEEEcCcccccCC----------Ch--------------HHHHHHHHHhcCCCeEEEEEcC
Q 010599 158 IKMPYASRAFDMAHCSRCLIPWGA----------ND--------------GRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 158 ~~lp~~~~sfDlV~~~~~l~~~~~----------~~--------------~~~l~e~~rvLkPGG~li~~~p 205 (506)
.. ++++++||+|+|+..+.+-.+ ++ ..++.++.+.|+|||.+++...
T Consensus 168 ~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 168 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 43 455679999999865543110 00 2578899999999999999854
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.80 E-value=3.7e-09 Score=98.30 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=70.6
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCC-CCC--CceeE
Q 010599 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFS-TYP--RTYDL 418 (506)
Q Consensus 343 ~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~-~~p--~s~D~ 418 (506)
+++..+...+..+|||+|||+|.+++.|+... ..|+++|.++++++.|.++. ....+.....+.. .++ +.||.
T Consensus 61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 34555555666789999999999999988854 57999999999999888762 1122222223322 233 77999
Q ss_pred EEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 419 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 419 v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
|++..+..+.+ .++.+.|||||+|++-
T Consensus 138 Iiv~~a~~~ip---------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTLL---------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEESSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred HHhhcchhhhh---------HHHHHhcCCCCEEEEE
Confidence 99977765332 3456789999999983
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.6e-09 Score=107.01 Aligned_cols=109 Identities=10% Similarity=0.035 Sum_probs=74.5
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-----------c-cceeccccccCC
Q 010599 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----------L-IGIYHDWCEAFS 410 (506)
Q Consensus 343 ~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-----------~-~~~~~~~~~~~~ 410 (506)
.++..+...+-.+|||+|||+|.++..++... ...+++++|.++.|++.|.+.. + .+.+...+.++.
T Consensus 142 ~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 142 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 34444445556689999999999988776531 1357999999999999886541 1 122333445555
Q ss_pred CCC---Cce--eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeC
Q 010599 411 TYP---RTY--DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 411 ~~p---~s~--D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
..| ..+ |+|.+++. . +..++...|.||.|+|||||++|+.+.
T Consensus 221 ~~~~~~~~~~advi~~~~~-~---f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 221 SEEWRERIANTSVIFVNNF-A---FGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp SHHHHHHHHHCSEEEECCT-T---TCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccccCcceEEEEcce-e---cchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 444 333 67777433 2 344778899999999999999998653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.79 E-value=8.9e-09 Score=95.74 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=74.0
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----------CcEEEecCccchHHHHHHHHHH-----cCCCeEEEE
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----------NVIAMSFAPRDSHEAQVQFALE-----RGVPAVIGV 154 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vdis~~dl~~~~~~~a~~-----~~~~~~~~~ 154 (506)
..+.+.+...-.++.+|||||||+|++++.|++. .|+++|+.+..+..+..+.... ...++.+..
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 3455555212234559999999999999888764 3788998876555444332211 123567777
Q ss_pred eccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 155 LGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 155 ~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.|......+.+.||.|++..++.+. + ..+.+.|||||++++..
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~-p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDT-P------TELINQLASGGRLIVPV 190 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSC-C------HHHHHTEEEEEEEEEEE
T ss_pred cccccccccccceeeEEEEeechhc-h------HHHHHhcCCCcEEEEEE
Confidence 8877766667789999998877543 2 35678999999998854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=4.3e-09 Score=105.98 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH------cC---C
Q 010599 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE------RG---V 148 (506)
Q Consensus 82 ~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~------~~---~ 148 (506)
+.-...++..+.+.+.+.++ .+|||||||+|..+..++.. .++|+|+++.++..+..+.... .+ .
T Consensus 198 GEl~~~~i~~Il~~l~Lkpg--d~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~ 275 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQLKKG--DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275 (406)
T ss_dssp CCBCHHHHHHHHHHTTCCTT--CEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred ccCCHHHHHHHHHHhCCCCC--CEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 33345567777888866544 49999999999999988865 4889999987765554433321 11 1
Q ss_pred CeEEE-EeccccCCCC---CCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 149 PAVIG-VLGTIKMPYA---SRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 149 ~~~~~-~~d~~~lp~~---~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...+. ..+....++. -..+|+|+++. +++ .++....|.++.|+|||||.++.+.
T Consensus 276 ~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f-~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLF-DEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTC-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cceeeeeechhhccccccccccceEEEEec-ccC-chHHHHHHHHHHHhcCCCcEEEEec
Confidence 22222 2222222211 13578888764 323 4556889999999999999998764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.72 E-value=3.9e-09 Score=96.09 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=36.3
Q ss_pred CCCCCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+.+.||+|+|.++|+++.+.. .++++.+.+.|+|||+|++-.
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 3457899999999998876544 689999999999999998853
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=4.6e-08 Score=92.92 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=85.4
Q ss_pred CCeEEcCCCCCCChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHH
Q 010599 69 GNVFRFPGGGTQFPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALE 145 (506)
Q Consensus 69 ~~~~~f~~~~~~f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~ 145 (506)
+-.|.+.-....|..+-..-...+.+.+ .++.+|||+|||+|.++..++.+ .|+++|+++..+ +.+.+.+..
T Consensus 78 g~~~~~d~~~~~f~~~~~~er~ri~~~~----~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~ 152 (260)
T d2frna1 78 GIKYKLDVAKIMFSPANVKERVRMAKVA----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHL 152 (260)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHC----CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHH
T ss_pred CeeEEeccccccEecCCHHHHHHHHhhc----CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHH
Confidence 3344454445556555444444667766 24569999999999999988865 488999998655 334444555
Q ss_pred cCCC--eEEEEeccccCCCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 146 RGVP--AVIGVLGTIKMPYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 146 ~~~~--~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
+++. +.+..+|+..++. .+.||.|++... .....++.++.++|+|||.+.+.
T Consensus 153 n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p-----~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 153 NKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp TTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred hCCCceEEEEEcchHHhcc-CCCCCEEEECCC-----CchHHHHHHHHhhcCCCCEEEEE
Confidence 5553 5667778777653 568999998642 22356889999999999998764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=2.2e-08 Score=95.68 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=89.5
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc-CCCCC-CceeEEEEcccc--
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHAHGLF-- 425 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~-~~~~p-~s~D~v~~~~~~-- 425 (506)
.+|||+|||+|-.+..|+... ....|+++|.|+..++.|.+- ++ ..++....+ |..++ ..||+|.|+-=+
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~~~fDlIvsNPPYi~ 187 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQFAMIVSNPPYID 187 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred cceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCCCceeEEEecchhhh
Confidence 469999999999998887632 235899999999999988764 22 112222222 22234 699999996222
Q ss_pred -----------ccccCCC---------CHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCce-EEEeecCCCCC
Q 010599 426 -----------SLYKDKC---------NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD-TKMVDHEDGPL 484 (506)
Q Consensus 426 -----------~~~~~~~---------~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~ 484 (506)
.+.++.. .+..++.+..+.|+|||.+++--.....+.+.+++.+.+|. +.++. |- .
T Consensus 188 ~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~k--Dl-~ 264 (274)
T d2b3ta1 188 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR--DY-G 264 (274)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE--CT-T
T ss_pred hhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEE--CC-C
Confidence 1111100 12358899999999999999965444567889999999996 32221 21 2
Q ss_pred CCeEEEEEE
Q 010599 485 VPEKILVAV 493 (506)
Q Consensus 485 ~~~~~l~~~ 493 (506)
+...++++|
T Consensus 265 g~~R~v~~r 273 (274)
T d2b3ta1 265 DNERVTLGR 273 (274)
T ss_dssp SSEEEEEEE
T ss_pred CCceEEEEe
Confidence 356778775
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.61 E-value=2.5e-08 Score=97.64 Aligned_cols=122 Identities=18% Similarity=0.167 Sum_probs=81.0
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc-------cCCCCCCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE-------AFSTYPRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~-------~~~~~p~s~D~v~ 420 (506)
..++|||++||+|+|+.+++.. ...|+++|.|+.+++.|.+. |+ ..+...+. .+.....+||+|.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi 220 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVV 220 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEE
Confidence 3578999999999999998763 36899999999999988765 33 11111112 1222347999999
Q ss_pred EccccccccCCCCH-------HHHHHHHhhcccCCcEEEEEeCh------hhHHHHHHHHhcCCceEEEee
Q 010599 421 AHGLFSLYKDKCNI-------EDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGMRWDTKMVD 478 (506)
Q Consensus 421 ~~~~~~~~~~~~~~-------~~~l~e~~RvLrPgG~~ii~d~~------~~~~~~~~~~~~~~w~~~~~~ 478 (506)
++-=-.. ....++ ..++..+.++|||||.|++..-. ...+.+.+.+...+.++.++.
T Consensus 221 ~DpP~~~-~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 221 LDPPAFA-KGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp ECCCCSC-CSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EcCCccc-cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 8431110 011122 35888999999999999996432 244555566667777766554
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.60 E-value=6.2e-08 Score=91.15 Aligned_cols=141 Identities=12% Similarity=0.087 Sum_probs=91.7
Q ss_pred HhhhcC-CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc-CCCCCCceeEEEE
Q 010599 344 INRLLD-SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-FSTYPRTYDLIHA 421 (506)
Q Consensus 344 ~~~~i~-~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~-~~~~p~s~D~v~~ 421 (506)
++.... ..+.++|||||||+|.++.+++++. ..++++-.|.+ .+++.+ +....+.....+ |...| ..|++..
T Consensus 72 l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~---~~~~ri~~~~gd~~~~~p-~~D~~~l 145 (244)
T d1fp1d2 72 MLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVIENA---PPLSGIEHVGGDMFASVP-QGDAMIL 145 (244)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTC---CCCTTEEEEECCTTTCCC-CEEEEEE
T ss_pred HHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhhhcc---CCCCCeEEecCCcccccc-cceEEEE
Confidence 344344 4678999999999999999998752 23577888875 544332 221111111122 33345 4599999
Q ss_pred ccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--------h---------------------hHHHHHHHHhcCCc
Q 010599 422 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------D---------------------EIIKVKKIVGGMRW 472 (506)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------~---------------------~~~~~~~~~~~~~w 472 (506)
.++|+.+. ..+...+|+.+.+.|+|||.++|.|.+ . ..++.++++++.+|
T Consensus 146 ~~vLh~~~-de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF 224 (244)
T d1fp1d2 146 KAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGF 224 (244)
T ss_dssp ESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred ehhhhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCC
Confidence 99999554 223557999999999999999997631 0 24677899999999
Q ss_pred eEEEe-ecCCCCCCCeEEEEEEe
Q 010599 473 DTKMV-DHEDGPLVPEKILVAVK 494 (506)
Q Consensus 473 ~~~~~-~~~~~~~~~~~~l~~~k 494 (506)
+...+ .... ...-++=++|
T Consensus 225 ~~v~v~~~~~---~~~~viE~~K 244 (244)
T d1fp1d2 225 SKFQVACRAF---NSLGVMEFYK 244 (244)
T ss_dssp SEEEEEEEET---TTEEEEEEEC
T ss_pred CceEEEecCC---CCEEEEEEeC
Confidence 85533 2221 2345666665
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.59 E-value=9.2e-08 Score=90.81 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=82.6
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCCCCC--CceeEEEEccccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP--RTYDLIHAHGLFS 426 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~~~p--~s~D~v~~~~~~~ 426 (506)
..+|||+|||+|.|+..++..+. ..|+++|.++..++.+.+. |+-..+.-.+.+.-.++ +.||.|+.+..
T Consensus 108 g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p-- 183 (260)
T d2frna1 108 DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV-- 183 (260)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC--
T ss_pred ccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC--
Confidence 46799999999999998887652 4799999999999877654 33222333334443443 78999987321
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEEeCh-------hhHHHHHHHHhcCCceEEEe
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~-------~~~~~~~~~~~~~~w~~~~~ 477 (506)
..-...|.+..++|||||++++.+.. ...+.++++++..++++...
T Consensus 184 -----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 184 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred -----CchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 12245788889999999999874321 24577888888889987654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=4e-08 Score=96.21 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCC-CeEEEEecccc----CCCCCCCeeEEEEcC
Q 010599 102 TVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIK----MPYASRAFDMAHCSR 174 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~~----lp~~~~sfDlV~~~~ 174 (506)
.+.+|||++||+|.++.+++.. .|+++|+++..+..+.. .+..+++ +..+...|... ++...++||+|++..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHH-HHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 3569999999999999988754 58999999877755554 4444565 46677777643 344567899999864
Q ss_pred cccccCC-Ch-------HHHHHHHHHhcCCCeEEEEEcCC
Q 010599 175 CLIPWGA-ND-------GRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 175 ~l~~~~~-~~-------~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
....... +. ..++..+.++|||||.|++++..
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3211111 11 25788899999999999997643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=6.7e-08 Score=85.92 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----MPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlV~~~~~ 175 (506)
.+.+|||+|||+|.++..++.++ ++++|+++..+..+. +.+...+....+...+... ......+||+|++...
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~-~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLK-ENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHH-HHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhh-HHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 34589999999999999888875 677888776554333 3344556666555555432 2345678999999764
Q ss_pred ccccCCChHHHHHHHH--HhcCCCeEEEEEcCCC
Q 010599 176 LIPWGANDGRYMIEVD--RVLRPGGYWVLSGPPI 207 (506)
Q Consensus 176 l~~~~~~~~~~l~e~~--rvLkPGG~li~~~p~~ 207 (506)
+ ..+....+.++. .+|+|||++++..+..
T Consensus 120 Y---~~~~~~~l~~l~~~~ll~~~g~ivie~~~~ 150 (171)
T d1ws6a1 120 Y---AMDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp T---TSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred c---ccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence 3 223334444443 4799999999876443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.55 E-value=1e-07 Score=93.48 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=78.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc-
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK- 159 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~- 159 (506)
......+.+.+ .++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+..+++ ...+...|+..
T Consensus 133 r~~r~~~~~~~----~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~-~N~~~ngl~~~~~~~~~d~~~~ 207 (324)
T d2as0a2 133 RENRLALEKWV----QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEE 207 (324)
T ss_dssp HHHHHHHGGGC----CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHH
T ss_pred hhHHHHHHhhc----CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHH-HHHHHcCCCccceeeechhhhh
Confidence 33334555555 23559999999999999998876 3889999987664444 34445555 35667777533
Q ss_pred ---CCCCCCCeeEEEEcCcccccCCC--------hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 160 ---MPYASRAFDMAHCSRCLIPWGAN--------DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 ---lp~~~~sfDlV~~~~~l~~~~~~--------~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
++....+||+|++......-... -..++..+.++|||||.|++++...
T Consensus 208 ~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 208 MEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp HHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred hHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 34456799999986432111111 1357888899999999999986443
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.50 E-value=1.7e-07 Score=84.89 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=77.3
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccH----HHHHHHh---CCCeEEEEeecCCCcccHHHHHhcCc-
Q 010599 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG----FAAAIQS---SKLWVMNVVPTLADKNTLGVIYERGL- 398 (506)
Q Consensus 327 f~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~----~~~~l~~---~~~~~~~v~~~d~~~~~l~~~~~rg~- 398 (506)
|-.|...|+..... +++ .++--+|+++|||+|. +|..|.+ ...+...++++|.++.+|+.|.+--.
T Consensus 5 FFRd~~~f~~L~~~---~~~---~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~ 78 (193)
T d1af7a2 5 FFREAHHFPILAEH---ARR---RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYR 78 (193)
T ss_dssp TTTTTTHHHHHHHH---HHH---SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEE
T ss_pred CcCCcHHHHHHHHH---Hhc---cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCccc
Confidence 44455566543332 112 2334479999999998 3433432 12234789999999999998863210
Q ss_pred -------cc------------------------------eeccccccCCCCCCceeEEEEccccccccCCCCHHHHHHHH
Q 010599 399 -------IG------------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEM 441 (506)
Q Consensus 399 -------~~------------------------------~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~ 441 (506)
.. ..++.....+...+.||+|.|-+||.... ......+|..+
T Consensus 79 ~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l 157 (193)
T d1af7a2 79 LSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRF 157 (193)
T ss_dssp GGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHH
T ss_pred HHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHH
Confidence 00 00111111111127899999999998654 33446899999
Q ss_pred hhcccCCcEEEEEeC
Q 010599 442 DRILRPEGAIIIRDE 456 (506)
Q Consensus 442 ~RvLrPgG~~ii~d~ 456 (506)
++.|+|||+|+|-..
T Consensus 158 ~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 158 VPLLKPDGLLFAGHS 172 (193)
T ss_dssp GGGEEEEEEEEECTT
T ss_pred HHHhCCCcEEEEecC
Confidence 999999999999644
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.48 E-value=1.4e-07 Score=88.61 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=72.6
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 89 ~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
.+.+.+.++.. ....+|||||||+|.++..++++ .++..|+. ..++.+. ....+.+...|..+ +.|
T Consensus 69 ~~~l~~~~~~f-~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp------~vi~~~~-~~~ri~~~~gd~~~-~~p- 138 (244)
T d1fp1d2 69 MKRMLEIYTGF-EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP------QVIENAP-PLSGIEHVGGDMFA-SVP- 138 (244)
T ss_dssp HHHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH------HHHTTCC-CCTTEEEEECCTTT-CCC-
T ss_pred HHHHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch------hhhhccC-CCCCeEEecCCccc-ccc-
Confidence 34555655421 33469999999999999999886 35556651 1222111 12346666666542 444
Q ss_pred CCeeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 165 RAFDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 165 ~sfDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
..|+|++.+++|+|.++. ..+|+++.+.|+|||.+++..
T Consensus 139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 459999999999986654 689999999999999999964
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.46 E-value=1.2e-07 Score=87.81 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=64.1
Q ss_pred CCCCceEEeecCcccHHHHHHHhC----CC-eEEEEeecCCCcccHHHHHhcC----c----cceeccccccCC-CCC--
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSS----KL-WVMNVVPTLADKNTLGVIYERG----L----IGIYHDWCEAFS-TYP-- 413 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~----~~-~~~~v~~~d~~~~~l~~~~~rg----~----~~~~~~~~~~~~-~~p-- 413 (506)
-.+..+|||+|||+|.+++.|+.. ++ ....|+++|..+++++.|.++- + +..+.....+.. .++
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 157 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence 345678999999999999888652 10 1136899999999999886641 0 111211122221 233
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+.||.|+++.+....+ ..+.+.|||||++++-
T Consensus 158 ~~fD~Iiv~~a~~~~p---------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 158 APYNAIHVGAAAPDTP---------TELINQLASGGRLIVP 189 (223)
T ss_dssp CSEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred cceeeEEEEeechhch---------HHHHHhcCCCcEEEEE
Confidence 7899999977776332 2456899999999983
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.46 E-value=1.5e-07 Score=85.28 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCC
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 432 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~ 432 (506)
.++|||+|||+|.++..++..+. .+|+++|.++.+++.|++.. ..+...+.++..+++.||+|.++-=|.......
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~--~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~~~ 124 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNC--GGVNFMVADVSEISGKYDTWIMNPPFGSVVKHS 124 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHC--TTSEEEECCGGGCCCCEEEEEECCCC-------
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHcc--ccccEEEEehhhcCCcceEEEeCcccchhhhhc
Confidence 56899999999999877777653 37999999999999998753 223334567777889999999976554222233
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhc
Q 010599 433 NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG 469 (506)
Q Consensus 433 ~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~ 469 (506)
+... +...+.+++.++..-.....+-+++.+..
T Consensus 125 D~~f----l~~a~~~~~~iy~ih~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 125 DRAF----IDKAFETSMWIYSIGNAKARDFLRREFSA 157 (197)
T ss_dssp CHHH----HHHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred hHHH----HHHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence 3222 22345556655554444445555555444
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.44 E-value=1e-07 Score=83.01 Aligned_cols=101 Identities=9% Similarity=-0.003 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCC--eEEEEecccc-CCCCCCCeeEEEEcCc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTIK-MPYASRAFDMAHCSRC 175 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~~-lp~~~~sfDlV~~~~~ 175 (506)
.+.+|||+|||+|.++...+.++ |+++|.++..+... .+.+...+.. ..+...|+.. ++...++||+|++...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~-~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAII-QDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHH-HHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhh-hhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 46699999999999998887774 78999987554333 3333434433 5666666644 3455788999998653
Q ss_pred ccccCCCh-HHHHHHHH--HhcCCCeEEEEEcCC
Q 010599 176 LIPWGAND-GRYMIEVD--RVLRPGGYWVLSGPP 206 (506)
Q Consensus 176 l~~~~~~~-~~~l~e~~--rvLkPGG~li~~~p~ 206 (506)
+ .... ...+..+. ++|+|||.+++..+.
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred h---ccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 2 2111 45555553 579999999997543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=2.9e-07 Score=90.12 Aligned_cols=122 Identities=10% Similarity=0.006 Sum_probs=78.5
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-------CCCCCceeEEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-------STYPRTYDLIHA 421 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-------~~~p~s~D~v~~ 421 (506)
..+|||++||+|+|+.+++..+. ..|+++|.++.+++.|.+. |+...++..+.+. +....+||+|.+
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 45899999999999999988763 3799999999999988664 4423333333321 123479999998
Q ss_pred ccccccccCCC-------CHHHHHHHHhhcccCCcEEEEEeChh------hHHHHHHHHhcCCceEEEe
Q 010599 422 HGLFSLYKDKC-------NIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 422 ~~~~~~~~~~~-------~~~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~~ 477 (506)
+---. ..+.- ....++....++|||||.|++..... ..+.+.+.+...+=...++
T Consensus 224 DpP~~-~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~~~~ 291 (324)
T d2as0a2 224 DPPAF-VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291 (324)
T ss_dssp CCCCS-CSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred CCccc-cCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 32211 01111 12357888899999999999965332 3344444444444344443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.40 E-value=1.3e-07 Score=85.52 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=83.9
Q ss_pred hhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-----cceeccccccC----CCCC-C
Q 010599 345 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAF----STYP-R 414 (506)
Q Consensus 345 ~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~~~~~~~~~~----~~~p-~ 414 (506)
+..+......++||++||+|+.+.++.+.- ....|+++|.++.|++.|.++.- +..++.....+ ..+. +
T Consensus 16 i~~l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~ 94 (192)
T d1m6ya2 16 IEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIE 94 (192)
T ss_dssp HHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCS
T ss_pred HHhhCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCC
Confidence 344455666789999999999999998752 23689999999999999998731 12232222221 1243 8
Q ss_pred ceeEEEEcccccccc------CCCCHHHHHHHHhhcccCCcEEEEEeChhh-HHHHHHHHhc
Q 010599 415 TYDLIHAHGLFSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEVDE-IIKVKKIVGG 469 (506)
Q Consensus 415 s~D~v~~~~~~~~~~------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~-~~~~~~~~~~ 469 (506)
+||.|..+...|-.+ ....+...|.++.++|+|||.+++-.-... ...++.+++.
T Consensus 95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 999998876665211 112345799999999999999988654432 3345555554
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.39 E-value=2.1e-06 Score=77.94 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=79.2
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC--ccceeccccccCCCCCCceeEEEEcccccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg--~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~ 429 (506)
...+|||+|||+|.++..++..+. ..|+++|.++.+++.|.+.. ........+.+...++..||+|.++-=|....
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~ 123 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 123 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccccc
Confidence 356899999999999988877763 48999999999999998752 11122223455556778999999977665444
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEE--eChhhHHHHHHHHhcCCceEEE
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIR--DEVDEIIKVKKIVGGMRWDTKM 476 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~--d~~~~~~~~~~~~~~~~w~~~~ 476 (506)
...+...+. +.+.+++.++.. ......+-++.+....+|.+..
T Consensus 124 ~~~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 124 KHADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp TTTTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 444543322 233445555443 2333456677888888998654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.35 E-value=2.5e-07 Score=85.06 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=66.8
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC-CCCC--Cc
Q 010599 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP--RT 415 (506)
Q Consensus 343 ~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~-~~~p--~s 415 (506)
+++..+...+..+|||||||+|.+++.|+... ...|+.+|..+++++.|.++ |+ ..+...+.+. ...+ +.
T Consensus 69 ~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 69 IMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCC
T ss_pred HHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCc
Confidence 34444455556789999999999999887631 13588999998888888765 32 2222222332 2234 89
Q ss_pred eeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
||.|++.......+ . .+..-|||||++++
T Consensus 146 fD~Iiv~~a~~~ip-----~----~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIP-----E----PLIEQLKIGGKLII 174 (215)
T ss_dssp EEEEEECSBBSSCC-----H----HHHHTEEEEEEEEE
T ss_pred ceeEEeecccccCC-----H----HHHHhcCCCCEEEE
Confidence 99999977776332 2 23456999999987
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.34 E-value=6.8e-07 Score=80.90 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=51.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.+.+|||+|||+|.++..++.. .|+++|+++ .+++.|+++...+.+.+.|...++ +.||+|+++..+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~-----~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCH-----HHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 4569999999999988777765 388888865 455666666666788888887764 679999998644
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.30 E-value=1.8e-06 Score=78.52 Aligned_cols=71 Identities=10% Similarity=-0.038 Sum_probs=53.1
Q ss_pred CCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l 176 (506)
.+.+|||+|||+|.++..++.++ |+++|+++..+..+. +.+...+....+...|...+ ++.||+|+++..+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 45699999999999998887763 789999876554333 33445577788887777665 4579999998755
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.29 E-value=1.1e-06 Score=85.53 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCC---CeEEEEecccc----CCCCCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK----MPYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~----lp~~~~sfDlV~ 171 (506)
.+.+|||+.||+|.++..++.. .|+++|+++..+..+..+.. .+++ ...+...|+.. +.-..+.||+|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~-~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE-ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH-HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH-HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 3569999999999999887765 38999999977755554443 3443 36677777632 223456899999
Q ss_pred EcCccc--------ccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 172 CSRCLI--------PWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~~~~l~--------~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..... ....+-..++..+.++|+|||.|++++...
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 853210 000111368888999999999999987543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2e-05 Score=72.21 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEEEe
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIGVL 155 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~ 155 (506)
...-.++..+.+.. ..++|||||||+|+.+.++++. .++++|.++.....+. +...+.+. .+.+..+
T Consensus 45 ~~~g~lL~~L~~~~-----~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~-~~~~~ag~~~~i~~~~G 118 (219)
T d2avda1 45 CEQAQLLANLARLI-----QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR-PLWRQAEAEHKIDLRLK 118 (219)
T ss_dssp HHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH-HHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHHHHHcc-----CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHH-HHHHhcCccceEEEEEe
Confidence 44456666666665 2458999999999999999874 4889999885544443 33333333 3566666
Q ss_pred cccc-CC-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 156 GTIK-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~-lp-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
++.. ++ ...++||+|+... ....-...+..+.+.|+|||.+++..
T Consensus 119 da~e~l~~~~~~~~~~~fD~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 119 PALETLDELLAAGEAGTFDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ehhhcchhhhhhcccCCccEEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 6522 21 3467899999853 23334678899999999999999863
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.24 E-value=1.1e-06 Score=80.69 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=74.8
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCC--CeEEE
Q 010599 81 FPQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGV--PAVIG 153 (506)
Q Consensus 81 f~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~--~~~~~ 153 (506)
.+...-.++..+.+.. .+++|||||||+|..+..|++. .++++|+++.....+...+ ...+. .+.+.
T Consensus 40 i~~~~G~lL~~lv~~~-----kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~ 113 (214)
T d2cl5a1 40 VGDAKGQIMDAVIREY-----SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTIL 113 (214)
T ss_dssp CHHHHHHHHHHHHHHH-----CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEE
T ss_pred cCHHHHHHHHHHHHhh-----CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceee
Confidence 3444455666666655 2358999999999999999864 3889999886554443333 33344 36677
Q ss_pred Eecccc-CC-----CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 154 VLGTIK-MP-----YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 154 ~~d~~~-lp-----~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++... ++ +..++||+|+....-.. ......+.+..++|||||++++.
T Consensus 114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~--~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 114 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDR--YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp ESCHHHHGGGHHHHSCCCCEEEEEECSCGGG--HHHHHHHHHHTTCEEEEEEEEES
T ss_pred eccccccccchhhcccccccceeeecccccc--cccHHHHHHHhCccCCCcEEEEe
Confidence 666543 22 45578999998632111 11134577888999999987764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.7e-06 Score=79.60 Aligned_cols=134 Identities=16% Similarity=0.074 Sum_probs=88.8
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccCCC-----CCCc
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFST-----YPRT 415 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~~~-----~p~s 415 (506)
...+.++||++|||+|.-+..|+..-.....|+.+|.+++..+.|++. |+-. ..+ +-.+.++. .+++
T Consensus 56 ~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~ 135 (219)
T d2avda1 56 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 135 (219)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred HccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence 334577999999999999999986311125899999999988877654 3311 111 11111221 2479
Q ss_pred eeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---------------hHHH-HHHHHhcCCceEEEeec
Q 010599 416 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---------------EIIK-VKKIVGGMRWDTKMVDH 479 (506)
Q Consensus 416 ~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---------------~~~~-~~~~~~~~~w~~~~~~~ 479 (506)
||+|+.++ .+..-...+..+.+.|||||.+++-|..- .+.+ .+.+.+.-+|++...-.
T Consensus 136 fD~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi 209 (219)
T d2avda1 136 FDVAVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 209 (219)
T ss_dssp EEEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred ccEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence 99999832 22355678889999999999999965421 1222 34457778899887655
Q ss_pred CCCCCCCeEEEEEEe
Q 010599 480 EDGPLVPEKILVAVK 494 (506)
Q Consensus 480 ~~~~~~~~~~l~~~k 494 (506)
.| .+++|+|
T Consensus 210 gd------Gl~ia~K 218 (219)
T d2avda1 210 GD------GLTLAFK 218 (219)
T ss_dssp TT------CEEEEEE
T ss_pred CC------eeEEEEe
Confidence 43 3778887
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.23 E-value=2.5e-06 Score=80.97 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=87.7
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc---cee-ccccccCCCCCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIY-HDWCEAFSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~---~~~-~~~~~~~~~~p~s~D~v~~~~~ 424 (506)
..+|+|+|||+|..+..++..+ ...|+++|.|+..+++|.+. ++. ... .+|.+.++...+.||+|.|+-=
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~--~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred ccEEEEeeeeeehhhhhhhhcc--cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 4579999999999888877643 35799999999999988764 331 111 2344444333479999999511
Q ss_pred -------cc----ccc------CCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEEEeecCCCCCCCe
Q 010599 425 -------FS----LYK------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE 487 (506)
Q Consensus 425 -------~~----~~~------~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 487 (506)
+. +.+ ....+..+-.=+.+.|+|||++++--.....+.++++++..+|- .|.. +.+
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~~---kDl~----g~~ 261 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVFL---KDSA----GKY 261 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEEE---ECTT----SSE
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCEE---eccC----CCc
Confidence 11 000 00111111111467899999999976666678888998888873 2222 468
Q ss_pred EEEEEEec
Q 010599 488 KILVAVKQ 495 (506)
Q Consensus 488 ~~l~~~k~ 495 (506)
.+++++|+
T Consensus 262 R~~~~~k~ 269 (271)
T d1nv8a_ 262 RFLLLNRR 269 (271)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEc
Confidence 89999886
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.21 E-value=1.1e-06 Score=85.69 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=76.8
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Ccc-ceeccccccC-C------CCCCceeEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAF-S------TYPRTYDLIH 420 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~-~~~~~~~~~~-~------~~p~s~D~v~ 420 (506)
.++|||+.||+|+|+.+++..+. ..|+++|.++..++.|.+. |+- ..+...+.+. . .-...||+|.
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 46899999999999988877552 4699999999999987764 331 1111112221 1 1236899999
Q ss_pred Ecc-cccccc-CCC----CHHHHHHHHhhcccCCcEEEEEeCh------hhHHHHHHHHhcCCceEEEe
Q 010599 421 AHG-LFSLYK-DKC----NIEDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 421 ~~~-~~~~~~-~~~----~~~~~l~e~~RvLrPgG~~ii~d~~------~~~~~~~~~~~~~~w~~~~~ 477 (506)
++- .|.... ... +...++....++|+|||.|+++... .....+.+.+...+......
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 841 111000 011 1235788888999999999996432 23344555566666665543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.20 E-value=5.4e-07 Score=78.24 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=63.4
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccccc----CCCCCCceeEEEEccc
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA----FSTYPRTYDLIHAHGL 424 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~----~~~~p~s~D~v~~~~~ 424 (506)
..+|||+|||+|.++...+.++. .+|+.+|.++++++.+.+- ++....+-.+.+ +......||+|+++-=
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 55899999999999987777764 4899999999999876654 322211111222 2223489999998322
Q ss_pred cccccCCCCHHHHHHHH--hhcccCCcEEEEEe
Q 010599 425 FSLYKDKCNIEDILLEM--DRILRPEGAIIIRD 455 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d 455 (506)
+. ......+|..+ .++|+|||.+++..
T Consensus 93 y~----~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YA----KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SH----HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hc----cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 21 01123344433 47899999999954
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.16 E-value=1e-06 Score=78.07 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=62.4
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecc-ccccC----CCCCCceeEEEEccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHD-WCEAF----STYPRTYDLIHAHGL 424 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~-~~~~~----~~~p~s~D~v~~~~~ 424 (506)
.+|||+|||+|.++...+.++ ..|+.+|.++.+++.+.+- |+...++. .+..+ ......||+|+++-=
T Consensus 43 ~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 43 GRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 479999999999999888877 3678899999999977643 33221211 11111 112278999998432
Q ss_pred cccccCCCCHHHHHHHH--hhcccCCcEEEEEeCh
Q 010599 425 FSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV 457 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~--~RvLrPgG~~ii~d~~ 457 (506)
|. -++...+.++ ..+|+|||.+++....
T Consensus 120 Y~-----~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 120 YA-----MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TT-----SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred cc-----cCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 21 1333344444 3589999999996543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=3.4e-07 Score=85.95 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=66.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCCCceeEEEEcccccccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 429 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~ 429 (506)
.+.++|||||||+|.++..|+++- ..++++..|.+ .+++.+.+.. +....++..+. .|. .|++...++++.+.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~~~~~r~~~~~~d~~~~---~P~-ad~~~l~~vlh~~~ 153 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLP-HVIEDAPSYPGVEHVGGDMFVS---IPK-ADAVFMKWICHDWS 153 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECT-TTTTTCCCCTTEEEEECCTTTC---CCC-CSCEECSSSSTTSC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccH-HhhhhcccCCceEEeccccccc---CCC-cceEEEEEEeecCC
Confidence 457899999999999999998752 23578888986 6665544432 22233333332 342 45566677777433
Q ss_pred CCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 430 DKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 430 ~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
..+...+|+++.+.|+|||.++|.|
T Consensus 154 -d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 154 -DEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp -HHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCceEEEEE
Confidence 1245679999999999999999964
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=2.8e-06 Score=75.96 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=66.8
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC-CeEEEEeccc-cCCCCCCCeeEEEEcCccc
Q 010599 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~-~~~~~~~d~~-~lp~~~~sfDlV~~~~~l~ 177 (506)
+.+|||++||+|.++...+.+| |+.+|.++..+.....+. ...+. ...+...|+. .+......||+|++...+
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~-~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY- 121 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNL-ATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF- 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHH-hhccccceeeeeecccccccccccccCEEEEcCcc-
Confidence 4589999999999999988874 888999875554333333 33333 4555555553 334456789999997643
Q ss_pred ccCCC-hHHHHHHHHH--hcCCCeEEEEEc
Q 010599 178 PWGAN-DGRYMIEVDR--VLRPGGYWVLSG 204 (506)
Q Consensus 178 ~~~~~-~~~~l~e~~r--vLkPGG~li~~~ 204 (506)
... ....+..+.+ +|+++|.+++..
T Consensus 122 --~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 --RRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp --STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 232 2566666654 699999999964
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.12 E-value=1.3e-06 Score=81.82 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=66.6
Q ss_pred CCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 103 VRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
..+|||||||+|.++..++++ .+++.|+. ..++.+. ....+.+...|... +.+ .+|++++.+++|+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp------~vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP------QVVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYILHN 150 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH------HHHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH------HHHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEeeccc
Confidence 358999999999999999886 35666662 2222221 12346777777653 333 5799999999999
Q ss_pred cCCCh-HHHHHHHHHhcCCC---eEEEEEc
Q 010599 179 WGAND-GRYMIEVDRVLRPG---GYWVLSG 204 (506)
Q Consensus 179 ~~~~~-~~~l~e~~rvLkPG---G~li~~~ 204 (506)
|.++. ..+|+++.+.|+|| |.+++..
T Consensus 151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 151 WTDKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 87655 68999999999998 6677753
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.10 E-value=5.8e-06 Score=78.31 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCC--eEEEEecc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGT 157 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~ 157 (506)
+..+.+++.+.+.+... ...+|||+|||+|..+..++.. .++++|+|+..+.-+. +.+...+.. ..+...+.
T Consensus 93 peTE~lv~~~~~~~~~~--~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~-~Na~~~~~~~~~~i~~~~~ 169 (271)
T d1nv8a_ 93 PETEELVELALELIRKY--GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEF 169 (271)
T ss_dssp TTHHHHHHHHHHHHHHH--TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESST
T ss_pred hhhhhhhhhhhhhhccc--cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHH-HHHHHcCCCceeEEeeccc
Confidence 34466666666655322 2348999999999888777654 5899999886554333 344444553 33333443
Q ss_pred cc-CCCCCCCeeEEEEcCcccccCC--------ChH----------HHHHH-HHHhcCCCeEEEEEcCC
Q 010599 158 IK-MPYASRAFDMAHCSRCLIPWGA--------NDG----------RYMIE-VDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 158 ~~-lp~~~~sfDlV~~~~~l~~~~~--------~~~----------~~l~e-~~rvLkPGG~li~~~p~ 206 (506)
.. ++...++||+|+|+...+.-.+ +|. .++++ +.+.|+|||.+++....
T Consensus 170 ~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~ 238 (271)
T d1nv8a_ 170 LEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 238 (271)
T ss_dssp TGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred ccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence 22 2333478999999865432110 011 22323 56789999999998653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=1.5e-06 Score=78.30 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=75.0
Q ss_pred HHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC---
Q 010599 88 YIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM--- 160 (506)
Q Consensus 88 ~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l--- 160 (506)
+++++.+.+.. .++..+||++||+|.++..++++ .++++|.++.++..+.... ...+..+.+...+..++
T Consensus 11 ll~evi~~l~~--~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l-~~~~~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 11 MVREVIEFLKP--EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-KEFSDRVSLFKVSYREADFL 87 (192)
T ss_dssp THHHHHHHHCC--CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-GGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHhhCC--CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhh-ccccccccchhHHHhhHHHH
Confidence 34556666643 34559999999999999999875 4788888775553333222 12244577777765443
Q ss_pred --CCCCCCeeEEEEcCccc--ccC------CChHHHHHHHHHhcCCCeEEEEEc
Q 010599 161 --PYASRAFDMAHCSRCLI--PWG------ANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 --p~~~~sfDlV~~~~~l~--~~~------~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+..++||.|+....+. ++. ......|..+.++|+|||.+++..
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 24467899998643321 111 111478899999999999999875
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.07 E-value=4.2e-06 Score=80.65 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCChhHHHHhhCC--cEEEecCccchHHHHHHHHHHcCC---CeEEEEeccccC----CCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSRN--VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIKM----PYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~~--v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~~l----p~~~~sfDlV~~ 172 (506)
.+.+|||++||+|.++..++..+ |++||+|...+..+..+.... ++ .+.+.+.|+... ....+.||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln-~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhh-cccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 35699999999999999998874 888888876665555444333 33 367777776432 223578999998
Q ss_pred cCccc-------cc--CCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLI-------PW--GANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~-------~~--~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..--. .+ ..+...++..+.++|+|||.+++.+
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 53211 01 1112356677888999999766653
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.05 E-value=1.9e-06 Score=80.68 Aligned_cols=121 Identities=14% Similarity=0.077 Sum_probs=81.9
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccC
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 430 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~ 430 (506)
.+.++|||||||+|.++..++++- ...+++..|.+ +.++.+... ..+.....+|-+....+|+++..++|+.+.+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~~~~---~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QVVENLSGS---NNLTYVGGDMFTSIPNADAVLLKYILHNWTD 153 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTCCCB---TTEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HHHHhCccc---CceEEEecCcccCCCCCcEEEEEeecccCCh
Confidence 457889999999999999998752 22578888885 554433222 2222222344332346799999999995441
Q ss_pred CCCHHHHHHHHhhcccCC---cEEEEEeCh----------------------------hhHHHHHHHHhcCCceEEEe
Q 010599 431 KCNIEDILLEMDRILRPE---GAIIIRDEV----------------------------DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 431 ~~~~~~~l~e~~RvLrPg---G~~ii~d~~----------------------------~~~~~~~~~~~~~~w~~~~~ 477 (506)
.+-..+|+.+.+.|+|| |+++|.|.. ...++.++++++.+++...+
T Consensus 154 -~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i 230 (244)
T d1fp2a2 154 -KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 230 (244)
T ss_dssp -HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred -HHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEE
Confidence 13357999999999999 778885431 03567888888899886544
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.03 E-value=2.4e-05 Score=72.39 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=102.8
Q ss_pred hhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHHH--hCCCeEEEEeecCCCcccHHH---HHhc-Cc--cc
Q 010599 329 EDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQ--SSKLWVMNVVPTLADKNTLGV---IYER-GL--IG 400 (506)
Q Consensus 329 ~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~--~~~~~~~~v~~~d~~~~~l~~---~~~r-g~--~~ 400 (506)
...+.|.+|+..-..++..+......+|+|+|+|.|-=+.-|+ ... .+++-+|....-..+ +.++ |+ +.
T Consensus 47 ~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~---~~v~Lves~~KK~~FL~~v~~~L~L~n~~ 123 (239)
T d1xdza_ 47 EKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPH---LHVTIVDSLNKRITFLEKLSEALQLENTT 123 (239)
T ss_dssp SHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred CHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCC---ccceeecchHHHHHHHHHHHHHhCCCCcE
Confidence 3457898888876666666654456789999999996443333 333 478888887654443 3333 55 23
Q ss_pred eeccccccCCCC---CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh---hHHHHHHHHhcCCceE
Q 010599 401 IYHDWCEAFSTY---PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDT 474 (506)
Q Consensus 401 ~~~~~~~~~~~~---p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~---~~~~~~~~~~~~~w~~ 474 (506)
.+|...|.+... ...||+|.| . ....+..++.-....|+|||.+++--... .+++.++.++.++++.
T Consensus 124 i~~~R~E~~~~~~~~~~~~D~v~s----R---Ava~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 124 FCHDRAETFGQRKDVRESYDIVTA----R---AVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (239)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEE----E---CCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred EEeehhhhccccccccccceEEEE----h---hhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence 456566666543 378999998 2 33478889999999999999999954443 4555566678888875
Q ss_pred EEeecC--CCCCCCeEEEEEEecc
Q 010599 475 KMVDHE--DGPLVPEKILVAVKQY 496 (506)
Q Consensus 475 ~~~~~~--~~~~~~~~~l~~~k~~ 496 (506)
..+..- ......-.+++.+|.-
T Consensus 197 ~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 197 ENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECS
T ss_pred EEEEEEeCCCCCCCEEEEEEEECC
Confidence 533221 1222245677777754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.03 E-value=5.5e-06 Score=77.37 Aligned_cols=103 Identities=10% Similarity=0.032 Sum_probs=69.9
Q ss_pred HHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 010599 91 QLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRA 166 (506)
Q Consensus 91 ~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~s 166 (506)
.+.+..+.. ....+|||||||+|.++..|+++ .+++.|+.+. + +.+. ....+.+...|... +.|.
T Consensus 71 ~~~~~~~~~-~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~~-~~~r~~~~~~d~~~-~~P~-- 139 (243)
T d1kyza2 71 KILETYTGF-EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDAP-SYPGVEHVGGDMFV-SIPK-- 139 (243)
T ss_dssp HHHHHCCTT-SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTCC-CCTTEEEEECCTTT-CCCC--
T ss_pred HHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhcc-cCCceEEecccccc-cCCC--
Confidence 444444322 23468999999999999999986 4677777442 2 1111 12346666666532 4443
Q ss_pred eeEEEEcCcccccCCCh-HHHHHHHHHhcCCCeEEEEEc
Q 010599 167 FDMAHCSRCLIPWGAND-GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 167 fDlV~~~~~l~~~~~~~-~~~l~e~~rvLkPGG~li~~~ 204 (506)
.|+++...+++.|.++. ..+|+++.+.|+|||.+++..
T Consensus 140 ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 140 ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 46677888888886544 689999999999999998864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=2e-05 Score=73.69 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCC---CCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEec
Q 010599 86 DKYIDQLASVIPI---KNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLG 156 (506)
Q Consensus 86 ~~~~~~i~~~l~~---~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d 156 (506)
..|++.+.+++.. ......+|||+|||+|..+..|+.+ .++++|+++..+.-+..+ +...++. ..+...+
T Consensus 42 ~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N-~~~n~l~~~~~~~~~~ 120 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN-VEQNNLSDLIKVVKVP 120 (250)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH-HHHhCCCcceeeeeec
Confidence 3444555555422 2234468999999999988888775 589999988666544443 3344444 3333322
Q ss_pred cccC------CCCCCCeeEEEEcCcccc
Q 010599 157 TIKM------PYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 157 ~~~l------p~~~~sfDlV~~~~~l~~ 178 (506)
.... ....++||+|+|+.-++.
T Consensus 121 ~~~~~~~~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 121 QKTLLMDALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp TTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred cHHhhhhhhhhcccCceeEEEecCcccc
Confidence 2111 123568999999987653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.00 E-value=4e-05 Score=74.36 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=91.2
Q ss_pred cCCCCCceEEeecCcccHHHHHHH----hCCCeEEEEeecCCCcccHHHHHhcC----c-cceeccccccCCCCC-Ccee
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQ----SSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYP-RTYD 417 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~----~~~~~~~~v~~~d~~~~~l~~~~~rg----~-~~~~~~~~~~~~~~p-~s~D 417 (506)
+......+|||.+||+|+|..++. +......+++++|.++.++.+|...- . ....+ ...+...+ ..||
T Consensus 113 ~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~fD 190 (328)
T d2f8la1 113 IQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVD 190 (328)
T ss_dssp HTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEE
T ss_pred hCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc--ccccccccccccc
Confidence 344556789999999999987764 33344578999999999998876542 1 11111 12233334 8999
Q ss_pred EEEEcccccccc--------------CCCCHH-HHHHHHhhcccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEe
Q 010599 418 LIHAHGLFSLYK--------------DKCNIE-DILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 418 ~v~~~~~~~~~~--------------~~~~~~-~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~ 477 (506)
+|.++-=|.... ...++. ..+..+.+.|+|||++++--+. .....+++.+..-.+-..++
T Consensus 191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii 270 (328)
T d2f8la1 191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGII 270 (328)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEE
T ss_pred ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEE
Confidence 999976554211 011122 2577899999999988774332 24566787655444444444
Q ss_pred ecC----CCCCCCeEEEEEEec
Q 010599 478 DHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 478 ~~~----~~~~~~~~~l~~~k~ 495 (506)
+.. .+...+-.+|+.+|+
T Consensus 271 ~lp~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 271 KLPETLFKSEQARKSILILEKA 292 (328)
T ss_dssp ECCGGGSCC-CCCEEEEEEEEC
T ss_pred ECCccccCCCCCCeEEEEEECC
Confidence 432 334456678888885
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.99 E-value=2.3e-06 Score=78.55 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=67.4
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccCCC----CC-C
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFST----YP-R 414 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~~~----~p-~ 414 (506)
+...+.++||++|||+|..+..|++.-.....|+.+|.++++++.|.+. |+-. ... +..+.++. ++ +
T Consensus 52 v~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~ 131 (214)
T d2cl5a1 52 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 131 (214)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred HHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccc
Confidence 3334567899999999999999886311225799999999999988643 5421 111 11222333 23 7
Q ss_pred ceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 415 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 415 s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
+||+|+..+.-+ .......+.|..|.|||||.+++-|
T Consensus 132 ~~D~ifiD~~~~----~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 132 TLDMVFLDHWKD----RYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp CEEEEEECSCGG----GHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred ccceeeeccccc----ccccHHHHHHHhCccCCCcEEEEeC
Confidence 899999853222 1112346788889999999866644
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.98 E-value=9.7e-06 Score=72.23 Aligned_cols=115 Identities=11% Similarity=-0.053 Sum_probs=73.4
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC--CeEEEEecccc--
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV--PAVIGVLGTIK-- 159 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~--~~~~~~~d~~~-- 159 (506)
..-+.+.++|.. ...+.+|||++||+|.++...+.+| ++.+|.++..+..... .+...+. ...+...|+..
T Consensus 27 ~vrealFn~l~~-~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~-N~~~~~~~~~~~i~~~D~~~~l 104 (182)
T d2fhpa1 27 KVKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKE-NIAITKEPEKFEVRKMDANRAL 104 (182)
T ss_dssp HHHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHH-Hhhhhhcccccccccccchhhh
Confidence 333445555532 1245699999999999999998884 7888987754433332 2332233 35666666543
Q ss_pred --CCCCCCCeeEEEEcCcccccCCChHHHHHHHHH--hcCCCeEEEEEcC
Q 010599 160 --MPYASRAFDMAHCSRCLIPWGANDGRYMIEVDR--VLRPGGYWVLSGP 205 (506)
Q Consensus 160 --lp~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~r--vLkPGG~li~~~p 205 (506)
+.-....||+|++..-+ . ..+....+..+.. +|+|+|.+++..+
T Consensus 105 ~~~~~~~~~fDlIflDPPY-~-~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 105 EQFYEEKLQFDLVLLDPPY-A-KQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHHHTTCCEEEEEECCCG-G-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhhcccCCCcceEEechhh-h-hhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 22245689999987633 1 1223667777754 6999999998653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.98 E-value=1.2e-05 Score=77.44 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=76.2
Q ss_pred CceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eeccccccCCC-------CCCceeEEE
Q 010599 353 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFST-------YPRTYDLIH 420 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~~~~~-------~p~s~D~v~ 420 (506)
..+|||+.||+|+|+.+++..+ ..|+.+|.|..+++.|.+- |+.. .+...+++.-. ..+.||+|.
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 4589999999999999999876 4799999999999988764 3322 22223343211 127899999
Q ss_pred Eccc-cccccC------CCCHHHHHHHHhhcccCCcEEEEEeC-------hhhHHHHHHHHhcCCceEE
Q 010599 421 AHGL-FSLYKD------KCNIEDILLEMDRILRPEGAIIIRDE-------VDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 421 ~~~~-~~~~~~------~~~~~~~l~e~~RvLrPgG~~ii~d~-------~~~~~~~~~~~~~~~w~~~ 475 (506)
++-= |..-.. +..+..++..+.++|+|||.+++... ....+.+.+.+...+..+.
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 8311 111000 11233466677889999997665321 1133455566777777764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.97 E-value=1.1e-05 Score=78.67 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC---------CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR---------NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~---------~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~ 172 (506)
.+.+|||.|||+|.++..+..+ .+.++|+++..+..+..... ..+........+.... .+...||+|++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~-~~~~~fD~vi~ 194 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLAN-LLVDPVDVVIS 194 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH-Hhhhhhhhhccccccc-ccccccccccc
Confidence 4458999999999998887532 37788998765544443333 3345556655554332 34568999999
Q ss_pred cCcccccCCCh-----------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 173 SRCLIPWGAND-----------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 ~~~l~~~~~~~-----------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..+....... ..++..+.+.|+|||++++..|..
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 87653211110 247899999999999999987754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=6.2e-07 Score=80.09 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=77.3
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecc---ccccCCC-CCCceeEEEEcccccc
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHD---WCEAFST-YPRTYDLIHAHGLFSL 427 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~---~~~~~~~-~p~s~D~v~~~~~~~~ 427 (506)
+..+|||+||++|+|..++.+.......|+++|.. .|-.+---.-+.+.+.+ ....... ....||+|.|+.++..
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~-~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~ 100 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLL-PMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM 100 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESS-CCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecc-cccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchh
Confidence 45689999999999999887632222467888876 33221100000111100 0000001 2367999999988875
Q ss_pred ccCCCC--------HHHHHHHHhhcccCCcEEEEE--eChhhHHHHHHHHhcCCceEEEeecC-CCCCCCeEEEEEEe
Q 010599 428 YKDKCN--------IEDILLEMDRILRPEGAIIIR--DEVDEIIKVKKIVGGMRWDTKMVDHE-DGPLVPEKILVAVK 494 (506)
Q Consensus 428 ~~~~~~--------~~~~l~e~~RvLrPgG~~ii~--d~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~~~k 494 (506)
..++.. ...+|.=..++|||||.+++- +..+ ...+...++..==++.++.-. .-+.+.|.+|+|+.
T Consensus 101 sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 101 SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 543321 114666678999999999994 2222 223333333222223333333 12335799999975
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.93 E-value=1.4e-05 Score=72.63 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=84.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC-CCCC-CceeEEEEccc
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-STYP-RTYDLIHAHGL 424 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~-~~~p-~s~D~v~~~~~ 424 (506)
.+......+|||.|||+|+|...+.+......++.++|..+.++.++..-. .. +.++ ...+ ..||+|.++--
T Consensus 14 l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~---~~---~~~~~~~~~~~~fd~ii~npP 87 (223)
T d2ih2a1 14 LAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAE---GI---LADFLLWEPGEAFDLILGNPP 87 (223)
T ss_dssp HCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEE---EE---ESCGGGCCCSSCEEEEEECCC
T ss_pred hcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccce---ee---eeehhccccccccceecccCc
Confidence 344445678999999999998888653222357889999876655443211 11 1222 2222 89999999877
Q ss_pred cccccC-------------------------CCCH-HHHHHHHhhcccCCcEEEEEeChh-----hHHHHHHH-HhcCCc
Q 010599 425 FSLYKD-------------------------KCNI-EDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKI-VGGMRW 472 (506)
Q Consensus 425 ~~~~~~-------------------------~~~~-~~~l~e~~RvLrPgG~~ii~d~~~-----~~~~~~~~-~~~~~w 472 (506)
|..... ..++ ...+....+.|||||++++--+.. ....+++. ++....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i 167 (223)
T d2ih2a1 88 YGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKT 167 (223)
T ss_dssp CCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEE
T ss_pred cccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCE
Confidence 653221 1122 245677889999999987743322 34567664 555555
Q ss_pred eEEEeecC-CCCCCCeEEEEEEec
Q 010599 473 DTKMVDHE-DGPLVPEKILVAVKQ 495 (506)
Q Consensus 473 ~~~~~~~~-~~~~~~~~~l~~~k~ 495 (506)
.+...... .+...+-.+++.+|+
T Consensus 168 ~i~~~~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 168 SVYYLGEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp EEEEEESCSTTCCCCEEEEEEESS
T ss_pred EEEcchhcCCCCCCcEEEEEEEeC
Confidence 53322211 233345667777763
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.93 E-value=2.6e-05 Score=70.84 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=72.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP 161 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp 161 (506)
...+.+.+++... .+.+|||.|||+|.|+..+.++ .+.++|+++..+. ..........+.....
T Consensus 6 ~i~~~m~~l~~~~--~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------~~~~~~~~~~~~~~~~ 74 (223)
T d2ih2a1 6 EVVDFMVSLAEAP--RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---------LPPWAEGILADFLLWE 74 (223)
T ss_dssp HHHHHHHHHCCCC--TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---------CCTTEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCC--CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---------hcccceeeeeehhccc
Confidence 4556677777543 4559999999999998888653 3889999775321 1123445555544433
Q ss_pred CCCCCeeEEEEcCcccccCC---------------------------C-hHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 162 YASRAFDMAHCSRCLIPWGA---------------------------N-DGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~---------------------------~-~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
....||+|+++..+..... + ...++..+.+.|+|||++++..|..
T Consensus 75 -~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 75 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred -cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 3568999999865432110 0 0256788999999999999988643
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=6.4e-05 Score=68.04 Aligned_cols=131 Identities=8% Similarity=0.090 Sum_probs=84.8
Q ss_pred hhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCcccHHHHHH--HhCCCeEEEEeecCCCcccHHHHH----hcCcccee
Q 010599 329 EDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAI--QSSKLWVMNVVPTLADKNTLGVIY----ERGLIGIY 402 (506)
Q Consensus 329 ~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l--~~~~~~~~~v~~~d~~~~~l~~~~----~rg~~~~~ 402 (506)
.....|.+++.+-..+...+.. .+|+|+|+|.|-=+.-| .... .+++-+|....-+.+.. +=|+ ..+
T Consensus 45 ~~~~~~~rHi~DSl~~~~~~~~---~~ilDiGsGaG~PGi~laI~~p~---~~~~Lves~~KK~~FL~~~~~~L~L-~nv 117 (207)
T d1jsxa_ 45 DPNEMLVRHILDSIVVAPYLQG---ERFIDVGTGPGLPGIPLSIVRPE---AHFTLLDSLGKRVRFLRQVQHELKL-ENI 117 (207)
T ss_dssp ---CHHHHHHHHHHHHGGGCCS---SEEEEETCTTTTTHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHTTC-SSE
T ss_pred CHHHHHHHHhcchHhhhhhhcC---CceeeeeccCCceeeehhhhccc---ceEEEEecchHHHHHHHHHHHHcCC-cce
Confidence 3446788888776666666643 47999999999633333 3333 57888888766555332 2254 223
Q ss_pred ccccccCCCCC--CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010599 403 HDWCEAFSTYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 403 ~~~~~~~~~~p--~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
+..+.+...+. ..||+|.| . ...++..++.-....|+|||.+++--.....++++.+ +-.|+..
T Consensus 118 ~v~~~R~E~~~~~~~fD~V~s----R---A~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~--~~~~~~~ 183 (207)
T d1jsxa_ 118 EPVQSRVEEFPSEPPFDGVIS----R---AFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALL--PEEYQVE 183 (207)
T ss_dssp EEEECCTTTSCCCSCEEEEEC----S---CSSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTS--CTTEEEE
T ss_pred eeeccchhhhccccccceehh----h---hhcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhh--hcCCEEE
Confidence 33344444443 68999987 2 2347888999999999999999997666566666654 3467644
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.72 E-value=3.8e-05 Score=70.65 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=74.2
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI 158 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~--~~~~~~d~~ 158 (506)
-.++..+.+.. ..++|||||+++|+-+..+++. .++++|.++.....+. +...+.|.. +.+..+++.
T Consensus 48 g~~L~~L~~~~-----~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~-~~~~~~g~~~~i~~~~g~a~ 121 (227)
T d1susa1 48 GQFLSMLLKLI-----NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDFREGPAL 121 (227)
T ss_dssp HHHHHHHHHHH-----TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHhc-----CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH-HHHHHhccccceeeeehHHH
Confidence 45666666665 2458999999999999888853 4889999885443333 333344443 555555552
Q ss_pred -cCC------CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 159 -KMP------YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 159 -~lp------~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.++ ...++||+|+.-. ....-...++.+.+.|+|||.+++.
T Consensus 122 ~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 122 PVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 122 1356899999853 3344478899999999999999986
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.70 E-value=5.6e-05 Score=69.51 Aligned_cols=132 Identities=15% Similarity=0.062 Sum_probs=84.8
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceecccc----ccCCC------CCCce
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC----EAFST------YPRTY 416 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~----~~~~~------~p~s~ 416 (506)
.+.++||++|+++|.-+..|++.--....|+.+|.+++..+.|.+. |+...+.-.. +.++. .+++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 3577899999999998888874211125789999998888877653 4321111111 11222 24689
Q ss_pred eEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeCh--------------hh----HHHHH----HHHhcCCceE
Q 010599 417 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------DE----IIKVK----KIVGGMRWDT 474 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~--------------~~----~~~~~----~~~~~~~w~~ 474 (506)
|+|+.++ ++......+..+.+.|||||.+++-+.+ .. .+.++ .+...=+|++
T Consensus 138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~ 211 (227)
T d1susa1 138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEI 211 (227)
T ss_dssp SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCC
T ss_pred eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999832 2334567888889999999999995442 11 11232 2355677887
Q ss_pred EEeecCCCCCCCeEEEEEEe
Q 010599 475 KMVDHEDGPLVPEKILVAVK 494 (506)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~k 494 (506)
.+.-..|| +++|+|
T Consensus 212 ~llPigDG------l~i~~K 225 (227)
T d1susa1 212 CMLPVGDG------ITICRR 225 (227)
T ss_dssp EEECSTTC------EEEECB
T ss_pred EEeecCCe------eEEEEE
Confidence 77766544 677777
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=2.8e-05 Score=69.19 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=63.6
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc---Cccceecccccc----CCCCCCceeEEEEccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEA----FSTYPRTYDLIHAHGLFS 426 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r---g~~~~~~~~~~~----~~~~p~s~D~v~~~~~~~ 426 (506)
.+|||++||+|.++...+.+|. -.|+.+|.++..++.+.+- .......-.+.+ +......||+|+++-=+.
T Consensus 45 ~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 4699999999999988887775 4799999999999877653 111111111111 222348999999953322
Q ss_pred cccCCCCHHHHHHHHh--hcccCCcEEEEEe
Q 010599 427 LYKDKCNIEDILLEMD--RILRPEGAIIIRD 455 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~--RvLrPgG~~ii~d 455 (506)
....+.+|.-+. .+|+|+|.+++..
T Consensus 123 ----~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 123 ----RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ----TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ----cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 223455555544 4799999999953
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.63 E-value=1.3e-05 Score=76.23 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhC---CcEEEecCccchHHHHHHHHH----------HcCCCeEEEEeccccCCCCCCCe
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR---NVIAMSFAPRDSHEAQVQFAL----------ERGVPAVIGVLGTIKMPYASRAF 167 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~----------~~~~~~~~~~~d~~~lp~~~~sf 167 (506)
..+++||-||+|.|..+..+++. .++++++++..+.-+..-+.. .....+.+...|+...--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 34569999999999999998876 378888877544322211100 01344677777764322235789
Q ss_pred eEEEEcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010599 168 DMAHCSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 168 DlV~~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
|+|++-.. .+.... ...+++.+.+.|+|||.+++..
T Consensus 151 DvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 99997432 222111 1578999999999999999854
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.63 E-value=3.2e-05 Score=74.71 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=69.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH-----cCCCeEEEEeccccC-CCCCCCeeEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE-----RGVPAVIGVLGTIKM-PYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~-----~~~~~~~~~~d~~~l-p~~~~sfDlV~ 171 (506)
..++||.||.|.|..+..+++. .++++++++..+.-+...+... ....+.+...|.... .-.+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 4568999999999999998765 4889999886554333332221 234567777776432 22356899999
Q ss_pred EcCcccccCCC-------hHHHHHHHHHhcCCCeEEEEEc
Q 010599 172 CSRCLIPWGAN-------DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~-------~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+-.. .++..+ ...+++.+.+.|+|||.|++..
T Consensus 157 ~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 157 IDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 7432 122111 1578999999999999999854
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00013 Score=68.02 Aligned_cols=127 Identities=9% Similarity=0.012 Sum_probs=80.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc---eec-cccccC-CC----CCCcee
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAF-ST----YPRTYD 417 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~---~~~-~~~~~~-~~----~p~s~D 417 (506)
....+|||||||+|-.+..|+..- ...+++++|.+++++++|.+- ++-. ..+ ++...+ .. ....||
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred cccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 345689999999999988887641 235899999999999988765 2211 111 111221 11 126899
Q ss_pred EEEEccccccccCC----------------------C----------CHHHHHHHHhhcccCCcEEEE-EeChhhHHHHH
Q 010599 418 LIHAHGLFSLYKDK----------------------C----------NIEDILLEMDRILRPEGAIII-RDEVDEIIKVK 464 (506)
Q Consensus 418 ~v~~~~~~~~~~~~----------------------~----------~~~~~l~e~~RvLrPgG~~ii-~d~~~~~~~~~ 464 (506)
+|.|+-=|-..... . -+..++.|-.+.++..|++.. --..+..++|+
T Consensus 139 ~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~ 218 (250)
T d2h00a1 139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK 218 (250)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH
T ss_pred EEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH
Confidence 99996555421000 0 023467788888999998864 22334567788
Q ss_pred HHHhcCCce-EEEee
Q 010599 465 KIVGGMRWD-TKMVD 478 (506)
Q Consensus 465 ~~~~~~~w~-~~~~~ 478 (506)
++++..+.. +..++
T Consensus 219 ~~L~~~g~~~i~~ie 233 (250)
T d2h00a1 219 EELRIQGVPKVTYTE 233 (250)
T ss_dssp HHHHHTTCSEEEEEE
T ss_pred HHHHHcCCCeEEEEE
Confidence 888888874 34433
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.57 E-value=7.4e-05 Score=72.04 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=85.9
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC------c-----cc-eeccccccCCCCCCceeE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-----IG-IYHDWCEAFSTYPRTYDL 418 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg------~-----~~-~~~~~~~~~~~~p~s~D~ 418 (506)
...++||.+|.|.|+.+..+.+.. .+.+|+.+|+++++++++.+.- . +. ...|.-+-+...++.||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 457789999999999998887642 2468899999999999887642 0 00 111111112224589999
Q ss_pred EEEccc--cccccCCCC--HHHHHHHHhhcccCCcEEEEEe------ChhhHHHHHHHHhcCCceEEEeec-CCCCCCCe
Q 010599 419 IHAHGL--FSLYKDKCN--IEDILLEMDRILRPEGAIIIRD------EVDEIIKVKKIVGGMRWDTKMVDH-EDGPLVPE 487 (506)
Q Consensus 419 v~~~~~--~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~d------~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~ 487 (506)
|++... +........ -...++.+.|.|||||.+++.- .......+.+.+++.=-.+..... ..+-...+
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w 234 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNF 234 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCC
Confidence 997432 110000011 1468899999999999999832 122445565555555444443211 11000135
Q ss_pred EEEEEEecc
Q 010599 488 KILVAVKQY 496 (506)
Q Consensus 488 ~~l~~~k~~ 496 (506)
.+++|.|..
T Consensus 235 ~f~~aS~~~ 243 (312)
T d1uira_ 235 GFLLASDAF 243 (312)
T ss_dssp EEEEEESSS
T ss_pred EeEEEeCCC
Confidence 677788753
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.00016 Score=63.88 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=66.2
Q ss_pred HHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC----
Q 010599 90 DQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM---- 160 (506)
Q Consensus 90 ~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l---- 160 (506)
.+|.+...+- .++.+||||||+.|.|+.++.++ .+.++|+.+.. .-....+...+....
T Consensus 11 ~EI~~k~~l~-k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~ 78 (180)
T d1ej0a_ 11 DEIQQSDKLF-KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMK 78 (180)
T ss_dssp HHHHHHHCCC-CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHH
T ss_pred HHHHHHhCcc-CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeecccccchhhh
Confidence 3455544332 34569999999999999998874 37888886632 122345555554321
Q ss_pred ----CCCCCCeeEEEEcCcccccCCCh-----------HHHHHHHHHhcCCCeEEEEEc
Q 010599 161 ----PYASRAFDMAHCSRCLIPWGAND-----------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 161 ----p~~~~sfDlV~~~~~l~~~~~~~-----------~~~l~e~~rvLkPGG~li~~~ 204 (506)
....+.||+|+|-.+. ....+. ...+.-+.++||+||.|++-.
T Consensus 79 ~~~~~~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 79 ALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 1245679999996554 222221 145677789999999999874
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=0.00036 Score=66.28 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEecccc-C-CCCCCCeeEE
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIK-M-PYASRAFDMA 170 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~----~~~~~~~~~~~d~~~-l-p~~~~sfDlV 170 (506)
...++||=||-|.|..++.+.+. .++.+||++..+..+..-+.. .......+...|... + ....++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 34569999999999999999876 378899987555333322211 124557777777532 2 2345689999
Q ss_pred EEcCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 171 HCSRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 171 ~~~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.-.. .+.... ...+++.+.+.|+|||.+++...
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 97432 221111 15799999999999999999764
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.50 E-value=0.00011 Score=67.93 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=58.5
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~---~~~~~~~~~d~~~l 160 (506)
...++.|.+.+... ++.+|||||||+|.++..|++. .++++++++..+ +..+++ ...+.+..+|+..+
T Consensus 7 ~~i~~~iv~~~~~~--~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~-----~~l~~~~~~~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 7 KHNIDKIMTNIRLN--EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC-----KTTENKLVDHDNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHHHTTCCCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHH-----HHHHHHTTTCCSEEEECCCGGGC
T ss_pred HHHHHHHHHhcCCC--CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchH-----HHHHHHhhcccchhhhhhhhhhc
Confidence 44567778877543 4559999999999999999986 488999876433 233322 34578888898888
Q ss_pred CCCCCCeeEEEEcCc
Q 010599 161 PYASRAFDMAHCSRC 175 (506)
Q Consensus 161 p~~~~sfDlV~~~~~ 175 (506)
+++......|+++.-
T Consensus 80 ~~~~~~~~~vv~NLP 94 (235)
T d1qama_ 80 KFPKNQSYKIFGNIP 94 (235)
T ss_dssp CCCSSCCCEEEEECC
T ss_pred cccccccceeeeeeh
Confidence 776555556666643
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.47 E-value=0.00012 Score=64.87 Aligned_cols=97 Identities=20% Similarity=0.161 Sum_probs=65.4
Q ss_pred CCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccC----CC---CCCceeEEE
Q 010599 352 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF----ST---YPRTYDLIH 420 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~----~~---~p~s~D~v~ 420 (506)
...+|||+.||+|.++...+.+|. ..|+.+|.++.+++.+.+- +....++-.+.+. .. -...||+|+
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 356899999999999998888874 4799999999999987653 2221221122221 11 225899999
Q ss_pred EccccccccCCCCHHHHHHHHh--hcccCCcEEEEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMD--RILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~--RvLrPgG~~ii~ 454 (506)
++-=+. ......+|..+. .+|+|+|.+++.
T Consensus 119 lDPPY~----~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPPYA----KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhh----hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 832211 224566777664 489999999985
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00048 Score=67.24 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCC-eEEEEecccc
Q 010599 83 QGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK 159 (506)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~ 159 (506)
...+.+++.+.+++... ++.+|||+-||+|.|+..|+++ .|+++|+++..+. .+.+.+..+++. ..+...+...
T Consensus 195 ~~~e~l~~~v~~~~~~~--~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~-~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQ--PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE-KGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHHHTCC--TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHH-HHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhhhHHHHHHHHhhccC--CCceEEEecccccccchhccccccEEEeccCcHHHHH-HHHHhHHhcccccceeeecchhh
Confidence 34577778888887543 3458999999999999999987 5999999886554 344455556665 5566555533
Q ss_pred -C---CCCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 160 -M---PYASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 160 -l---p~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +.....||+|+....- .. ....+..+.+. +|.-.++++..|.
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR---~G-~~~~~~~l~~~-~~~~ivYVSCnp~ 318 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPAR---AG-AAGVMQQIIKL-EPIRIVYVSCNPA 318 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCT---TC-CHHHHHHHHHH-CCSEEEEEESCHH
T ss_pred hhhhhhhhhccCceEEeCCCC---cc-HHHHHHHHHHc-CCCEEEEEeCCHH
Confidence 2 2335679999875432 11 24566666654 7888888887654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=0.00026 Score=67.42 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
..++||-||.|.|..+..+++. .++++|+++..+.-+..-+... ....+.+...|+.. +.-.++.||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4569999999999999999876 3788999886554333222221 23456777777632 2234568999997
Q ss_pred cCcccccC-C----ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 173 SRCLIPWG-A----NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~-~----~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
-.. .+.. + ....+++.+.+.|+|||.+++...
T Consensus 169 D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 169 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 432 1211 1 126899999999999999998654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.37 E-value=0.0002 Score=63.30 Aligned_cols=124 Identities=18% Similarity=0.142 Sum_probs=86.0
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc--cceeccccccCCC----CC-CceeEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFST----YP-RTYDLI 419 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~--~~~~~~~~~~~~~----~p-~s~D~v 419 (506)
.+......+++|..+|.||.+.+|.+++ ..|+++|..++++..|.++-. +..+|.....+.. +. ..+|.|
T Consensus 13 ~l~~~~g~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgI 89 (182)
T d1wg8a2 13 LLAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGI 89 (182)
T ss_dssp HHTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred hcCCCCCCEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence 3445556689999999999999999875 589999999999999887532 3344443333332 33 689999
Q ss_pred EEcccccccc--CCC----CHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCce
Q 010599 420 HAHGLFSLYK--DKC----NIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWD 473 (506)
Q Consensus 420 ~~~~~~~~~~--~~~----~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~ 473 (506)
..+..++..+ +.. .+...|.....+|+|||.+++-.--. ....++.+++.-.++
T Consensus 90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k 150 (182)
T d1wg8a2 90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK 150 (182)
T ss_dssp EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence 9977776321 111 22346777789999999999866543 334567777765555
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.36 E-value=0.0006 Score=64.26 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=66.1
Q ss_pred CCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-cc------------ceecccccc-CCC--CC
Q 010599 350 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI------------GIYHDWCEA-FST--YP 413 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~------------~~~~~~~~~-~~~--~p 413 (506)
....++||-+|+|.|+.+..+.+.+. ..|+.+|+++++++++++-- +. ..++-..++ +.. -.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCC--ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 34578999999999999998887654 36788889999999987531 10 000001111 111 13
Q ss_pred CceeEEEEccccccccCCCC--HHHHHHHHhhcccCCcEEEEE
Q 010599 414 RTYDLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++||+|..+..-.. ..... -...+..+.|.|+|||.+++.
T Consensus 148 ~~yDvIi~D~~~~~-~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 148 RGFDVIIADSTDPV-GPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CCEEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCC-CCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 78999998543221 11111 146899999999999999984
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.34 E-value=0.0003 Score=62.17 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=63.5
Q ss_pred CCEEEEECCCCChhHHHHhhCC---cEEEecCccchHHHHHHHHHHcCC---CeEEEEeccc---cCCCCCCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWSRN---VIAMSFAPRDSHEAQVQFALERGV---PAVIGVLGTI---KMPYASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~~~---v~~vdis~~dl~~~~~~~a~~~~~---~~~~~~~d~~---~lp~~~~sfDlV~~~ 173 (506)
+.+|||+-||+|.++...+.+| ++.+|.+...+ ....+....-+. ...+...+.. ........||+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchh-hhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 4489999999999999999985 77788866433 222223333232 2333333322 223345579999997
Q ss_pred CcccccCCCh-HHHHHHHHH--hcCCCeEEEEEcC
Q 010599 174 RCLIPWGAND-GRYMIEVDR--VLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~-~~~l~e~~r--vLkPGG~li~~~p 205 (506)
.-+ ..+. ...+..+.. +|+++|.+++..+
T Consensus 123 PPY---~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPF---HFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCS---SSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhH---hhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 643 3333 566666654 7999999999754
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00034 Score=66.33 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=68.2
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~----~~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
..++||-||-|.|..+..+.+. .++++||++..+.-+..-+.. .....+.+...|+.. +.-..++||+|++
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 4568999999999999999876 478889987555433322221 123567777777632 2224568999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEc
Q 010599 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~ 204 (506)
-. ..+.... ...+++.+.+.|+|||.+++..
T Consensus 158 D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 158 DS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred cC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 53 2221111 1378999999999999999865
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.34 E-value=4.9e-05 Score=70.75 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=60.8
Q ss_pred HHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 010599 87 KYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYAS 164 (506)
Q Consensus 87 ~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~ 164 (506)
..++.|.+.+... ++.+|||||||+|.++..|++. .++++++++.++......+. ...++.+..+|+..++++.
T Consensus 16 ~ii~kIv~~~~~~--~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 16 KVLNQIIKQLNLK--ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp TTHHHHHHHCCCC--SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHHhcCCC--CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhh--hccchhhhhhhhhcccccc
Confidence 3456677777544 3458999999999999999886 48899998865532211111 1234677778888888888
Q ss_pred CCeeEEEEcCcc
Q 010599 165 RAFDMAHCSRCL 176 (506)
Q Consensus 165 ~sfDlV~~~~~l 176 (506)
..++.|+++..+
T Consensus 92 ~~~~~vv~NLPY 103 (245)
T d1yuba_ 92 KQRYKIVGNIPY 103 (245)
T ss_dssp SSEEEEEEECCS
T ss_pred ceeeeEeeeeeh
Confidence 888888887654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.34 E-value=0.00038 Score=65.63 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
..++||-||-|.|..++.+.+. .+++++|++..+.-+..-+... ....+.+...|... +.-..++||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 3468999999999999999875 4788999886554333322211 23456777777633 2234578999997
Q ss_pred cCcccccCC----ChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 173 SRCLIPWGA----NDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~----~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
-.. .+... ....+++.+.+.|+|||.++....
T Consensus 155 D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 532 22111 125899999999999999998653
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.33 E-value=0.0011 Score=61.02 Aligned_cols=94 Identities=11% Similarity=0.039 Sum_probs=61.3
Q ss_pred CCEEEEECCCCChhHHHHhh----CCcEEEecCccchHHHHHH-HHHHcCCCeE-EEEeccccCCC---CCCCeeEEEEc
Q 010599 103 VRTALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQ-FALERGVPAV-IGVLGTIKMPY---ASRAFDMAHCS 173 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~----~~v~~vdis~~dl~~~~~~-~a~~~~~~~~-~~~~d~~~lp~---~~~sfDlV~~~ 173 (506)
..+++|||+|.|.-+..|+- ..++.+|-+..-. +.++ ...+-++... +....++.+.. ..++||+|+|.
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~--~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI--TFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH--HHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH--HHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 45899999999976666653 2577777754311 2222 3334466543 33334444332 24589999996
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.+ .....++.-+...+++||.+++-
T Consensus 149 Av-----a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 149 AV-----ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred hh-----hCHHHHHHHHhhhcccCCEEEEE
Confidence 43 23578999999999999999886
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.25 E-value=0.00025 Score=67.96 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=64.9
Q ss_pred CCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEEE
Q 010599 102 TVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFAL----ERGVPAVIGVLGTIK-MPYASRAFDMAHC 172 (506)
Q Consensus 102 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~----~~~~~~~~~~~d~~~-lp~~~~sfDlV~~ 172 (506)
.+++||-||-|.|..++.+++. .++++++++..+..+..-+.. .....+.+...|... +.-..++||+|++
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 4568999999999999999875 478888877544322211111 112446666666532 2224568999998
Q ss_pred cCcccccCCC----hHHHHHHHHHhcCCCeEEEEEcC
Q 010599 173 SRCLIPWGAN----DGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 173 ~~~l~~~~~~----~~~~l~e~~rvLkPGG~li~~~p 205 (506)
-.. .+.... ...+++.+.+.|+|||.++.-..
T Consensus 186 D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 186 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 432 121110 14789999999999999999754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.20 E-value=0.0004 Score=63.76 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=56.9
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcc--cHHH---HHhcCccceeccccccCCCC-CCceeEEEEcccccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN--TLGV---IYERGLIGIYHDWCEAFSTY-PRTYDLIHAHGLFSL 427 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~--~l~~---~~~rg~~~~~~~~~~~~~~~-p~s~D~v~~~~~~~~ 427 (506)
.+|+|+|||+|+++..+++.. .++.|.+.+.--+ +.++ .+..+++... --.++-.. +...|+|.|+-+=+
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~--~~~dv~~l~~~~~D~vlcDm~es- 143 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQ--SGVDVFFIPPERCDTLLCDIGES- 143 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEE--CSCCTTTSCCCCCSEEEECCCCC-
T ss_pred CeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccch--hhhhHHhcCCCcCCEEEeeCCCC-
Confidence 479999999999999998763 3456666655211 1111 1111111111 11223333 48899999965432
Q ss_pred ccCCCCHH-----HHHHHHhhcccCCcEEEEEeCh
Q 010599 428 YKDKCNIE-----DILLEMDRILRPEGAIIIRDEV 457 (506)
Q Consensus 428 ~~~~~~~~-----~~l~e~~RvLrPgG~~ii~d~~ 457 (506)
..+. .++ .+|.=+.++|+|||-|++.-..
T Consensus 144 s~~~-~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 144 SPNP-TVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CSSH-HHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCCc-hhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 1111 111 4666667899999999997443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.14 E-value=0.00053 Score=68.72 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=75.0
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC-----------------CcEEEecCccchHHHHHHHHHHcCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR-----------------NVIAMSFAPRDSHEAQVQFALERGV 148 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----------------~v~~vdis~~dl~~~~~~~a~~~~~ 148 (506)
...++.+.+++.. ..+.+|||-.||+|.|...+.++ .+.++|+++....-+..........
T Consensus 148 ~~Iv~~mv~ll~~--~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~ 225 (425)
T d2okca1 148 RPLIQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 225 (425)
T ss_dssp HHHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred hhhhHhhheeccC--cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence 4455666777643 34458999999999998776542 4778999776554444444433211
Q ss_pred --CeEEEEeccccCCCCCCCeeEEEEcCcccccC---------------CC-hHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 149 --PAVIGVLGTIKMPYASRAFDMAHCSRCLIPWG---------------AN-DGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 149 --~~~~~~~d~~~lp~~~~sfDlV~~~~~l~~~~---------------~~-~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
...+...|.... .+...||+|+++..+..-. .+ ...++..+...|++||.+.+..|.
T Consensus 226 ~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 226 TDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp SSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 122333344322 3456899999987552100 00 125899999999999999998764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.04 E-value=0.0013 Score=60.28 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCC-eEEEE-e
Q 010599 82 PQGADKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGV-L 155 (506)
Q Consensus 82 ~~~~~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~-~ 155 (506)
.+++..+.+ +.+.....+ ..+|+|+|||.|.++.+++.+ ++.++++-. +.++.-+. ....+-+ +.+.. .
T Consensus 49 SR~~~Kl~~-~~~~~~~~~--~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~~-~~~~~~ni~~~~~~~ 123 (257)
T d2p41a1 49 SRGSAKLRW-FVERNLVTP--EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPIP-MSTYGWNLVRLQSGV 123 (257)
T ss_dssp STHHHHHHH-HHHTTSSCC--CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCCC-CCSTTGGGEEEECSC
T ss_pred chHHHHHHH-HHHhcCccC--CCeEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCcc-ccccccccccchhhh
Confidence 355555544 433333332 338999999999999999876 355666632 22110000 0000111 11111 1
Q ss_pred ccccCCCCCCCeeEEEEcCcccccCCCh-------HHHHHHHHHhcCCCeEEEEEc
Q 010599 156 GTIKMPYASRAFDMAHCSRCLIPWGAND-------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 156 d~~~lp~~~~sfDlV~~~~~l~~~~~~~-------~~~l~e~~rvLkPGG~li~~~ 204 (506)
+... .+.+.+|+|+|-..- . ..++ -.+|+-+.++|+|||-|++-+
T Consensus 124 dv~~--l~~~~~D~vlcDm~e-s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 124 DVFF--IPPERCDTLLCDIGE-S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp CTTT--SCCCCCSEEEECCCC-C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hHHh--cCCCcCCEEEeeCCC-C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence 1122 346789999997542 2 2222 156777789999999998865
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0014 Score=58.91 Aligned_cols=93 Identities=13% Similarity=0.022 Sum_probs=62.7
Q ss_pred CEEEEECCCCChhHHHHhh----CCcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEEcCcccc
Q 010599 104 RTALDTGCGVASWGAYLWS----RNVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHCSRCLIP 178 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~----~~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~~~~l~~ 178 (506)
.+|+|+|+|.|.-+..|+- ..++.+|.+..-. ....+.+.+-++. +......++.+. ...+||+|+|.. +
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA-~-- 141 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F-- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S--
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhh-h--
Confidence 4899999999976666653 2578888865322 1122334455664 555555566554 356899998854 3
Q ss_pred cCCChHHHHHHHHHhcCCCeEEEEE
Q 010599 179 WGANDGRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 179 ~~~~~~~~l~e~~rvLkPGG~li~~ 203 (506)
.....++.-+...+++||.+++.
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEE
Confidence 23577888999999999999886
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.91 E-value=0.0011 Score=63.68 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=66.4
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEE--
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYASRAFDMAHC-- 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlV~~-- 172 (506)
.++.+|||+.||.|.=+..+++. .+++.|+++.-+.... +.....+.. +.....|...++.....||.|++
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 34569999999999766666542 2788888765443322 223333443 44454555666656778999996
Q ss_pred --cCc--cc-----ccCCCh----------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 173 --SRC--LI-----PWGAND----------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 --~~~--l~-----~~~~~~----------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+.. +. .|.... ..+|..+.+.|||||+++.++-..
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 211 10 010011 167888999999999999987554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.006 Score=59.10 Aligned_cols=125 Identities=11% Similarity=0.164 Sum_probs=83.8
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccceeccccc----cCCCC
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE----AFSTY 412 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~----~~~~~ 412 (506)
|..++..+...+..+|||+-||+|.|+..|+++. ..|+++|.++..++.|.+- |+ .+....+. .+...
T Consensus 201 ~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~~~~ 276 (358)
T d1uwva2 201 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQ 276 (358)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSS
T ss_pred HHHHHHhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhhhhh
Confidence 3344445556667789999999999999999865 5799999999998877653 32 22222222 22222
Q ss_pred ---CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh-hHHHHHHHHhcCCceEEEe
Q 010599 413 ---PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV 477 (506)
Q Consensus 413 ---p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~-~~~~~~~~~~~~~w~~~~~ 477 (506)
...||+|.. . ++|..+..++.++.+ ++|.=.++|+-... ....++.+. +.+|++..+
T Consensus 277 ~~~~~~~d~vil----D--PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~-~~gy~l~~i 337 (358)
T d1uwva2 277 PWAKNGFDKVLL----D--PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALL-KAGYTIARL 337 (358)
T ss_dssp GGGTTCCSEEEE----C--CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHH-HTTCEEEEE
T ss_pred hhhhccCceEEe----C--CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHH-HCCCeEeEE
Confidence 277999987 1 345666678888766 58999999986654 445555543 457876643
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.002 Score=60.86 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=69.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEE--
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--YASRAFDMAHC-- 172 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlV~~-- 172 (506)
..+.+|||+.+|.|.=+..|++. .++++|+++.-+. ...+.....+.++...+.+....+ ...+.||.|++
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~-~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLS-RVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHH-HHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhh-hHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 34569999999999877776653 3889999987653 334455556776655554433221 23568999995
Q ss_pred --cCcccccCCCh------------------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 173 --SRCLIPWGAND------------------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 173 --~~~l~~~~~~~------------------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+..- .+..++ ..+|..+.+.|||||+++.++-..
T Consensus 180 PCSg~G-~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATG-VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCCCGG-GTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccccC-ccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 2211 111111 167888999999999999987554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.89 E-value=0.00054 Score=65.10 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=68.2
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc-c-c--------e-eccccccCCCCCCceeEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-I-G--------I-YHDWCEAFSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~-~-~--------~-~~~~~~~~~~~p~s~D~v 419 (506)
...++||=+|.|.|+.+..+.+.. .+..|+.+|+.+++++++++-.. . + . ..|--+-+...++.||+|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 447899999999999999998753 24578888999999999876421 0 0 0 000001122345889999
Q ss_pred EEccccccccCCC--CHHHHHHHHhhcccCCcEEEEEeC
Q 010599 420 HAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDE 456 (506)
Q Consensus 420 ~~~~~~~~~~~~~--~~~~~l~e~~RvLrPgG~~ii~d~ 456 (506)
.++..-....... --...+..+.|.|+|||.+++.-.
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 9854332111111 125789999999999999999543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.85 E-value=0.00099 Score=63.15 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=69.1
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------cc-eeccccccCCCCC-Cce
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IG-IYHDWCEAFSTYP-RTY 416 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~-~~~~~~~~~~~~p-~s~ 416 (506)
.....++||=+|-|.|+.+..+.+.. .+..|+.+|+.+++++++++--- .. .+.|-.+-+...+ +.|
T Consensus 77 ~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 77 SIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred hCCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence 33457899999999999999988752 23578888999999998876320 00 1111111122234 699
Q ss_pred eEEEEccccccccCCCC--HHHHHHHHhhcccCCcEEEEEe
Q 010599 417 DLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 417 D~v~~~~~~~~~~~~~~--~~~~l~e~~RvLrPgG~~ii~d 455 (506)
|+|..+. +.-...... -...++.+.|.|+|||.+++.-
T Consensus 156 DvIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 156 DAVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 9999843 321111111 1468999999999999999953
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.85 E-value=0.00059 Score=65.22 Aligned_cols=144 Identities=11% Similarity=0.047 Sum_probs=81.5
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-c-cceecc------cccc---CCCCCCceeEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L-IGIYHD------WCEA---FSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~-~~~~~~------~~~~---~~~~p~s~D~v 419 (506)
...++||-+|.|.|+.+..+.+.. .+.+|+.+|+.+++++++.+-- . .....+ .+.+ +...++.||+|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 457789999999999999998753 2468999999999999987632 1 000000 0001 11135889999
Q ss_pred EEccccccccCC-CCHHHHHHHHhhcccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec-CC-CCCCCeEEEE
Q 010599 420 HAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH-ED-GPLVPEKILV 491 (506)
Q Consensus 420 ~~~~~~~~~~~~-~~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~-~~-~~~~~~~~l~ 491 (506)
.+...-...... .--...+..+.|.|+|||.++..-.. +....+.+.+++.=..+..... .. =+...+.+++
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~ 263 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLI 263 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEE
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeE
Confidence 985433211110 11135889999999999999996322 2333344444443333332211 11 0112455677
Q ss_pred EEec
Q 010599 492 AVKQ 495 (506)
Q Consensus 492 ~~k~ 495 (506)
|.|.
T Consensus 264 aSk~ 267 (312)
T d2b2ca1 264 CAKN 267 (312)
T ss_dssp EESS
T ss_pred EECC
Confidence 7764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.79 E-value=0.003 Score=55.46 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=70.1
Q ss_pred HHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCC----
Q 010599 89 IDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMP---- 161 (506)
Q Consensus 89 ~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp---- 161 (506)
++++.+.+.. .++..++|..+|.|.++..++++ .++++|..+. ++..+.+. .....+.......+.
T Consensus 7 l~Evl~~l~~--~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~-----ai~~a~~~~~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 7 YQEALDLLAV--RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPE-----AVARAKGLHLPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp HHHHHHHHTC--CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHhcCC--CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhh-----HHHHHhhccccceeEeehHHHHHHHHHH
Confidence 3455565533 34558999999999999999987 3888888663 33444443 223555555543321
Q ss_pred -CCCCCeeEEEEcCccc--ccCC------ChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 -YASRAFDMAHCSRCLI--PWGA------NDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 -~~~~sfDlV~~~~~l~--~~~~------~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+..+.+|.|+....+. ++.. .....|.....+|+|||.+++.+
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 3356799999744332 2111 01246888899999999999875
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0012 Score=62.46 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=67.5
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------cceec-cccccCCCCCCcee
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYH-DWCEAFSTYPRTYD 417 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~~~~-~~~~~~~~~p~s~D 417 (506)
.....++||=+|-|.|+.+..+.+.. .+.+|+.+|+.+++++++++--. ...++ |--+-+...++.||
T Consensus 75 ~~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 75 SHPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred hCcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 33456789999999999999998753 24688888899999999976420 00110 10011112347999
Q ss_pred EEEEccccccccCCCCH--HHHHHHHhhcccCCcEEEEEe
Q 010599 418 LIHAHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~--~~~l~e~~RvLrPgG~~ii~d 455 (506)
+|.+.. +.-......+ ...+..+.|.|+|||.+++.-
T Consensus 154 vIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 154 VIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 999853 3311111111 257999999999999999953
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0047 Score=58.12 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=76.3
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----CccceeccccccCC----CCCCceeEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS----TYPRTYDLI 419 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~~~~~~~~~~----~~p~s~D~v 419 (506)
+......+||||+||+|+=+.+|++...- ..|++.|.++.-+....++ |+.... -...+.. ..+..||.|
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~-~~~~~~~~~~~~~~~~fd~I 175 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATV-KQGDGRYPSQWCGEQQFDRI 175 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEE-EECCTTCTHHHHTTCCEEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhccccccee-eeccccccchhcccccccEE
Confidence 45556678999999999987777653211 4689999998887755544 431111 1111111 123789999
Q ss_pred EEc------cccccccCCCCHH----------------HHHHHHhhcccCCcEEEEEe----ChhhHHHHHHHHhc-CCc
Q 010599 420 HAH------GLFSLYKDKCNIE----------------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGG-MRW 472 (506)
Q Consensus 420 ~~~------~~~~~~~~~~~~~----------------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~-~~w 472 (506)
.++ +++. ...++. .+|....+.|||||+++-+. ..+-.+.|+.++++ ..|
T Consensus 176 L~DaPCSg~G~~r---r~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~ 252 (284)
T d1sqga2 176 LLDAPCSATGVIR---RHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA 252 (284)
T ss_dssp EEECCCCCGGGTT---TCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTC
T ss_pred EEeccccccCccc---cccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCc
Confidence 872 3332 222222 48888999999999998853 33455667777665 455
Q ss_pred eE
Q 010599 473 DT 474 (506)
Q Consensus 473 ~~ 474 (506)
+.
T Consensus 253 ~~ 254 (284)
T d1sqga2 253 EL 254 (284)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.57 E-value=0.0095 Score=55.62 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=85.3
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCc----------cceec-cccccCCCCCCceeEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYH-DWCEAFSTYPRTYDLI 419 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~----------~~~~~-~~~~~~~~~p~s~D~v 419 (506)
...++||-+|-|.|+.++.+.+.. .+.+|+.+|+.++++++|.+--. +..+. |--+-+...++.||+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 446799999999999999998742 13578888888899998876420 00110 0001122245889999
Q ss_pred EEccccccccCCC-CHHHHHHHHhhcccCCcEEEEEeCh-----hhHHHHHHHHhcCCceEEEeec-CCC-CCCCeEEEE
Q 010599 420 HAHGLFSLYKDKC-NIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH-EDG-PLVPEKILV 491 (506)
Q Consensus 420 ~~~~~~~~~~~~~-~~~~~l~e~~RvLrPgG~~ii~d~~-----~~~~~~~~~~~~~~w~~~~~~~-~~~-~~~~~~~l~ 491 (506)
.....-....... --...+..+.|.|+|||.++..-.. .....+.+.+++.--.+..... ... +...+.+++
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~ 232 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI 232 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEE
Confidence 9864332211111 1246899999999999999985422 2333444444444333332221 110 112467777
Q ss_pred EEecc
Q 010599 492 AVKQY 496 (506)
Q Consensus 492 ~~k~~ 496 (506)
|.|..
T Consensus 233 aS~~~ 237 (274)
T d1iy9a_ 233 GSKKY 237 (274)
T ss_dssp EESSC
T ss_pred EcCCC
Confidence 77753
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.54 E-value=0.00047 Score=63.82 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=55.5
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC-ccceeccccccCCCCC---CceeEE
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYP---RTYDLI 419 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~~~~~~~~~~~~p---~s~D~v 419 (506)
+...+......+||+||||+|.++..|++.+ .+|+++|.+++|++.+.++. ....+.-.++++-.++ ..++.|
T Consensus 21 Iv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~v 97 (245)
T d1yuba_ 21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKI 97 (245)
T ss_dssp HHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEE
T ss_pred HHHhcCCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeE
Confidence 3344555667889999999999999999875 47999999999998887763 2233333445555444 666777
Q ss_pred EEcccc
Q 010599 420 HAHGLF 425 (506)
Q Consensus 420 ~~~~~~ 425 (506)
.++.=+
T Consensus 98 v~NLPY 103 (245)
T d1yuba_ 98 VGNIPY 103 (245)
T ss_dssp EEECCS
T ss_pred eeeeeh
Confidence 774433
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.53 E-value=0.0039 Score=59.53 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=75.4
Q ss_pred cCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccce--eccccccCCCCCCceeEEEE
Q 010599 348 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGI--YHDWCEAFSTYPRTYDLIHA 421 (506)
Q Consensus 348 i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~~--~~~~~~~~~~~p~s~D~v~~ 421 (506)
+......+|||++||+|+=+.+|++.-.-...+++.|.++.-+....++ |...+ .+.-...++..+..||.|.+
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILv 191 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL 191 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEE
Confidence 3444556899999999996555543211124689999998877755443 43222 22212223334588999887
Q ss_pred c------ccccccc------CCCCHH-------HHHHHHhhcccCCcEEEEEe----ChhhHHHHHHHHhcCCceE
Q 010599 422 H------GLFSLYK------DKCNIE-------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGGMRWDT 474 (506)
Q Consensus 422 ~------~~~~~~~------~~~~~~-------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~~~w~~ 474 (506)
+ +++..-. ...++. .+|....+.|||||+++-+. ..+-.+.|+.+++...++.
T Consensus 192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~~ 267 (313)
T d1ixka_ 192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL 267 (313)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCEE
Confidence 2 2222100 001111 48889999999999888853 3344566777777766553
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.43 E-value=0.0061 Score=60.67 Aligned_cols=149 Identities=15% Similarity=0.054 Sum_probs=87.7
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhC----CC--------eEEEEeecCCCcccHHHHHhc----Cccc-eeccccc-c
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSS----KL--------WVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCE-A 408 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~----~~--------~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~~-~ 408 (506)
.+......+|+|-.||+|+|.....+. .. ...++.++|..+.+..+|.-. |... ...-.++ .
T Consensus 157 ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~ 236 (425)
T d2okca1 157 CINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS 236 (425)
T ss_dssp HHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT
T ss_pred eccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCch
Confidence 344555678999999999997665431 10 012478889988888877643 2211 0011112 2
Q ss_pred CCCCC-CceeEEEEccccccccC-------------CCCH-HHHHHHHhhcccCCcEEEEEeChh------hHHHHHHHH
Q 010599 409 FSTYP-RTYDLIHAHGLFSLYKD-------------KCNI-EDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIV 467 (506)
Q Consensus 409 ~~~~p-~s~D~v~~~~~~~~~~~-------------~~~~-~~~l~e~~RvLrPgG~~ii~d~~~------~~~~~~~~~ 467 (506)
+...+ ..||+|.++-=|..... ..+. ...+..+...|+|||.+++--+.. ....+++.+
T Consensus 237 l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~L 316 (425)
T d2okca1 237 LEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL 316 (425)
T ss_dssp TTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred hhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHH
Confidence 32333 78999999777752211 1111 247888999999999877743322 345677764
Q ss_pred hcCCceEEEeecC----CCCCCCeEEEEEEec
Q 010599 468 GGMRWDTKMVDHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 468 ~~~~w~~~~~~~~----~~~~~~~~~l~~~k~ 495 (506)
-.-++-..++... .+...+-.+|+.+|+
T Consensus 317 l~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~ 348 (425)
T d2okca1 317 LQDFNLHTILRLPTGIFYAQGVKANVLFFSKG 348 (425)
T ss_dssp HHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred HHhcchhHhhcCCcccccCCCCCeEEEEEECC
Confidence 4444433344433 233456778888884
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0024 Score=65.52 Aligned_cols=118 Identities=15% Similarity=0.141 Sum_probs=70.7
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC----------------------CcEEEecCccchHHHHHHHH
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR----------------------NVIAMSFAPRDSHEAQVQFA 143 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------------------~v~~vdis~~dl~~~~~~~a 143 (506)
...++.|.+++.. ..+.+|+|-.||+|.|.....+. .+.++|+++....-+..+..
T Consensus 150 ~~Iv~~mv~ll~~--~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 150 RPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred cchhHhhhhcccC--ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 3455667777743 34458999999999988665431 36788887754443433333
Q ss_pred HHcCCCeE------EEEeccccC-CCCCCCeeEEEEcCcccc-cC-----------CCh-HHHHHHHHHhcCCCeEEEEE
Q 010599 144 LERGVPAV------IGVLGTIKM-PYASRAFDMAHCSRCLIP-WG-----------AND-GRYMIEVDRVLRPGGYWVLS 203 (506)
Q Consensus 144 ~~~~~~~~------~~~~d~~~l-p~~~~sfDlV~~~~~l~~-~~-----------~~~-~~~l~e~~rvLkPGG~li~~ 203 (506)
.. +.... +...+.... ......||+|+++..+-. +. .+. -.++..+.+.|+|||++.+.
T Consensus 228 l~-~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 228 LH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp TT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh-cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 22 22211 111111111 123457999999875521 00 011 25899999999999999998
Q ss_pred cCC
Q 010599 204 GPP 206 (506)
Q Consensus 204 ~p~ 206 (506)
.|.
T Consensus 307 lP~ 309 (524)
T d2ar0a1 307 VPD 309 (524)
T ss_dssp EEH
T ss_pred Eeh
Confidence 764
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.37 E-value=0.0024 Score=56.06 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=61.7
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc-eecccc----ccCCCC--CCceeEEEEc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWC----EAFSTY--PRTYDLIHAH 422 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~-~~~~~~----~~~~~~--p~s~D~v~~~ 422 (506)
.+|||+-||||.++.....+|. ..|+-+|.+...++.+.+- +... .....+ ..+... ...||+|+++
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 3799999999999999999884 5899999998888766653 2211 111111 111112 2579999993
Q ss_pred cccccccCCCCHHHHHHHHh--hcccCCcEEEEEe
Q 010599 423 GLFSLYKDKCNIEDILLEMD--RILRPEGAIIIRD 455 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~--RvLrPgG~~ii~d 455 (506)
-=+. ....+.+|.-+. .+|+|+|.+++.-
T Consensus 123 PPY~----~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 123 PPFH----FNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhHh----hhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 2221 112344555443 5899999999953
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.17 E-value=0.0035 Score=57.18 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=56.9
Q ss_pred CCEEEEECCCCChhHHHHhh-------C-CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEE
Q 010599 103 VRTALDTGCGVASWGAYLWS-------R-NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP----YASRAFDMA 170 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~-------~-~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp----~~~~sfDlV 170 (506)
+.+|||||++.|.-+..+++ . .+.++|+.+.... .+......+.+..+|..... +....+|+|
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEE
Confidence 34899999999976554442 1 4889999653221 11122345677777754322 335568888
Q ss_pred EEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 171 ~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
+.-.. |.......-+ ++...|++||++++.+.
T Consensus 156 fID~~--H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 156 FIDNA--HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEESS--CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred EEcCC--cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 76432 3222112222 46689999999999753
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.0062 Score=57.01 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc-CCCeEEEEeccccCCC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKMPY 162 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~-~~~~~~~~~d~~~lp~ 162 (506)
...++.|.+.+... .+..|||||+|.|.++..|+++ .++++++++..+..-...+.... .....+...|+....+
T Consensus 7 ~~i~~kIv~~~~~~--~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 7 PLIINSIIDKAALR--PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHHTCCC--TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHHhCCC--CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 34556677776443 3458999999999999999986 58999997744322222221111 1246667777766555
Q ss_pred CCCCeeEEEEcCc
Q 010599 163 ASRAFDMAHCSRC 175 (506)
Q Consensus 163 ~~~sfDlV~~~~~ 175 (506)
+ .++.|+++..
T Consensus 85 ~--~~~~vV~NLP 95 (278)
T d1zq9a1 85 P--FFDTCVANLP 95 (278)
T ss_dssp C--CCSEEEEECC
T ss_pred h--hhhhhhcchH
Confidence 4 3567777653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=95.97 E-value=0.0043 Score=56.72 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=43.0
Q ss_pred HHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC
Q 010599 343 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 343 ~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
+++..+......+||++|||+|.++..|++.+ .+|++++.++++++...++.
T Consensus 12 ~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~ 63 (235)
T d1qama_ 12 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKL 63 (235)
T ss_dssp HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHh
Confidence 34455555677889999999999999999875 47999999999999888774
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.94 E-value=0.016 Score=53.28 Aligned_cols=43 Identities=19% Similarity=0.017 Sum_probs=34.9
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.....|||-=||+|+-+.+-..-+ .+.+++|.++...++|.+|
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~lg---R~~ig~El~~~y~~~a~~R 248 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQ 248 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHHHHhC---CeEEEEeCCHHHHHHHHHH
Confidence 445679999999999765555433 5899999999999999988
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0033 Score=58.11 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCCCCCCCEEEEECCCCChhHHHHhhC--CcEEEecCccchHHHHHHHHHHc---CCCeEEEEeccccC
Q 010599 86 DKYIDQLASVIPIKNGTVRTALDTGCGVASWGAYLWSR--NVIAMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKM 160 (506)
Q Consensus 86 ~~~~~~i~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vdis~~dl~~~~~~~a~~~---~~~~~~~~~d~~~l 160 (506)
...++.|.+.+... ++..|||||||.|.++..|++. .++++++++..+ ...+++ ...+.+...|+...
T Consensus 7 ~~~~~~Iv~~~~~~--~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~-----~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 7 QFVIDSIVSAINPQ--KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLA-----ARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCCC--TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHH-----HHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCCC--CCCEEEEECCCchHHHHHHHccCCceEEEEeccchh-----HHHHHHhhhccchhHHhhhhhhh
Confidence 34556677777443 3458999999999999999987 589999965332 222222 23466777777655
Q ss_pred C
Q 010599 161 P 161 (506)
Q Consensus 161 p 161 (506)
.
T Consensus 80 ~ 80 (252)
T d1qyra_ 80 N 80 (252)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.71 E-value=0.0049 Score=54.58 Aligned_cols=104 Identities=16% Similarity=0.012 Sum_probs=66.3
Q ss_pred CCCCCceEEeecCcccH-HHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC------CCCCceeEEE
Q 010599 349 DSGRYRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS------TYPRTYDLIH 420 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~-~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~------~~p~s~D~v~ 420 (506)
......+||-+|||..+ +++.+++ .+ ...|+.+|.+++.++.|.+.|....+..-.+++. +-+.-+|++.
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~g--a~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLG--AAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhc--ccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence 33445689999999955 4555543 33 2478888999999999999986433322112111 1235688887
Q ss_pred Eccccccc------cCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 421 AHGLFSLY------KDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~------~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-...+... .........|.++.+++||||++++.
T Consensus 100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 54433211 11112346899999999999999984
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.027 Score=52.86 Aligned_cols=105 Identities=10% Similarity=0.014 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhC-----CcEEEecCccchHHHHHHHHHHcCCC-eEEEEeccccCCCC---CCCeeEEE
Q 010599 101 GTVRTALDTGCGVASWGAYLWSR-----NVIAMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKMPYA---SRAFDMAH 171 (506)
Q Consensus 101 ~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vdis~~dl~~~~~~~a~~~~~~-~~~~~~d~~~lp~~---~~sfDlV~ 171 (506)
..+.+|||+.||.|.=+.+|++. .++++|+++.-+. ...+.....|.. +.+...|...+... .+.||.|+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~-~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLA-SMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHH-HHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 34568999999999877777653 3789999765442 233444455655 44555555554322 25799999
Q ss_pred E----cCccc-------cc----CCC-h-------HHHHHHHHHhcCCCeEEEEEcCCC
Q 010599 172 C----SRCLI-------PW----GAN-D-------GRYMIEVDRVLRPGGYWVLSGPPI 207 (506)
Q Consensus 172 ~----~~~l~-------~~----~~~-~-------~~~l~e~~rvLkPGG~li~~~p~~ 207 (506)
+ +..-. .| ... . ..++..+. .|+|||+++.++-..
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 5 22110 00 000 0 12344444 479999999987544
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.50 E-value=0.0077 Score=58.32 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=62.2
Q ss_pred CEEEEECCCCChhHHHHhhC--------------------CcEEEecCccchHHHHHHHHHHcC-CCeEEE--Eec-ccc
Q 010599 104 RTALDTGCGVASWGAYLWSR--------------------NVIAMSFAPRDSHEAQVQFALERG-VPAVIG--VLG-TIK 159 (506)
Q Consensus 104 ~~VLDiGCG~G~~~~~L~~~--------------------~v~~vdis~~dl~~~~~~~a~~~~-~~~~~~--~~d-~~~ 159 (506)
-+|.|+||.+|..+..+.+. .|.--|+-.+|...-...+..... .+..+. +.. ...
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 46999999999665332211 244557777777544433322221 112222 222 234
Q ss_pred CCCCCCCeeEEEEcCcccccCCC-h--------------------------------HHHHHHHHHhcCCCeEEEEEc
Q 010599 160 MPYASRAFDMAHCSRCLIPWGAN-D--------------------------------GRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 160 lp~~~~sfDlV~~~~~l~~~~~~-~--------------------------------~~~l~e~~rvLkPGG~li~~~ 204 (506)
--||++|.|+++|+.++ ||... | ..+|+-=.+-|+|||.++++.
T Consensus 133 rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 44889999999999988 66431 0 147777788899999999975
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.43 E-value=0.012 Score=53.55 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=60.4
Q ss_pred HHHHHHhhhcCCCCCceEEeecCcccHHHHHHHh----CCCeEEEEeecCCCcccHHHHHhc-Cccceecccc---ccCC
Q 010599 339 NAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIYER-GLIGIYHDWC---EAFS 410 (506)
Q Consensus 339 ~~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~----~~~~~~~v~~~d~~~~~l~~~~~r-g~~~~~~~~~---~~~~ 410 (506)
.-|..++..++ -.+||.+|++.|+-+..+++ .+ .-..++++|..++....+... .-+..+..-+ +.+.
T Consensus 70 ~~~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~-~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~ 145 (232)
T d2bm8a1 70 AVYHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFE 145 (232)
T ss_dssp HHHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGG
T ss_pred HHHHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcC-CCceEEecCcChhhhhhhhccccceeeeecccccHHHHH
Confidence 34555555454 34799999999986554432 11 124788888865443322111 1111111111 1222
Q ss_pred CCC-CceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEeChh
Q 010599 411 TYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 458 (506)
Q Consensus 411 ~~p-~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d~~~ 458 (506)
.+. ..+|+|+-.+. + . ......-+ ++...|+|||++||-|...
T Consensus 146 ~l~~~~~dlIfID~~-H-~--~~~v~~~~-~~~~lLk~GG~iIveD~i~ 189 (232)
T d2bm8a1 146 HLREMAHPLIFIDNA-H-A--NTFNIMKW-AVDHLLEEGDYFIIEDMIP 189 (232)
T ss_dssp GGSSSCSSEEEEESS-C-S--SHHHHHHH-HHHHTCCTTCEEEECSCHH
T ss_pred HHHhcCCCEEEEcCC-c-c--hHHHHHHH-HHhcccCcCCEEEEEcCCc
Confidence 222 56898887543 2 1 11111112 5668999999999999864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.011 Score=50.78 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=58.2
Q ss_pred CCCceEEeecCc-ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccc--cCCCCCCceeEEEEcccccc
Q 010599 351 GRYRNIMDMNAG-FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE--AFSTYPRTYDLIHAHGLFSL 427 (506)
Q Consensus 351 ~~~~~vLD~gcG-~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~--~~~~~p~s~D~v~~~~~~~~ 427 (506)
....+||-+||| .|.++..+++. ...+|+.+|.+++.++.+++-|....+...-+ ......+.||+|...-.-.
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~- 102 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL- 102 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS-
T ss_pred CCCCEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC-
Confidence 345679999999 45555555442 12578888999899999988775333322111 1112347899776521111
Q ss_pred ccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 428 YKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 428 ~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+. ..+....++|||||++++-
T Consensus 103 --~~----~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 103 --TD----IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp --TT----CCTTTGGGGEEEEEEEEEC
T ss_pred --cc----chHHHHHHHhhccceEEEe
Confidence 00 1244567999999999983
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.034 Score=47.60 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=66.2
Q ss_pred HHHHHHHHhhhcCCCCCceEEeecC--cccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC---
Q 010599 337 HVNAYKKINRLLDSGRYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS--- 410 (506)
Q Consensus 337 ~v~~y~~~~~~i~~~~~~~vLD~gc--G~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~--- 410 (506)
...-|..+.......+..+||-.|| |.|.++..+++ .+ .+|+.++.+++.++.+++-|....+..-.+++.
T Consensus 13 ~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G---~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i 89 (174)
T d1yb5a2 13 YFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYG---LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKI 89 (174)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccC---cccccccccccccccccccCcccccccccccHHHHh
Confidence 3344555544333345568999997 45556666654 33 467777778788999988886433322112211
Q ss_pred ---CCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 411 ---TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 411 ---~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
+-++.+|+|.. |.-...+.+..++|||||.++.
T Consensus 90 ~~~t~~~g~d~v~d----------~~g~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 90 KKYVGEKGIDIIIE----------MLANVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp HHHHCTTCEEEEEE----------SCHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhhccCCceEEee----------cccHHHHHHHHhccCCCCEEEE
Confidence 12377999987 2224578888899999999998
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.80 E-value=0.051 Score=49.05 Aligned_cols=43 Identities=12% Similarity=-0.005 Sum_probs=35.7
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 396 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r 396 (506)
.....|||-=||+|+-+.+-.+.+ .+.+++|.+++-+++|.+|
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~~---R~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence 445689999999999776666554 5899999999999999887
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.05 Score=55.27 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=84.5
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHh----CCC-------------eEEEEeecCCCcccHHHHHhc----Cccce-ecc
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQS----SKL-------------WVMNVVPTLADKNTLGVIYER----GLIGI-YHD 404 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~----~~~-------------~~~~v~~~d~~~~~l~~~~~r----g~~~~-~~~ 404 (506)
.+......+|+|-.||+|+|.....+ ... ...++.+.|..+.+..+|.-. |.... .+.
T Consensus 159 ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~ 238 (524)
T d2ar0a1 159 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 238 (524)
T ss_dssp HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGT
T ss_pred cccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccccccc
Confidence 34455566899999999999765432 110 012578888888888877643 21111 000
Q ss_pred cc---ccCCC----CCCceeEEEEcccccccc----------CCCCHH-HHHHHHhhcccCCcEEEEEeChh------hH
Q 010599 405 WC---EAFST----YPRTYDLIHAHGLFSLYK----------DKCNIE-DILLEMDRILRPEGAIIIRDEVD------EI 460 (506)
Q Consensus 405 ~~---~~~~~----~p~s~D~v~~~~~~~~~~----------~~~~~~-~~l~e~~RvLrPgG~~ii~d~~~------~~ 460 (506)
.. ..+-. ....||+|.++-=|.... +..+.. ..|.-+.+.|||||++.|--+.. ..
T Consensus 239 ~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~ 318 (524)
T d2ar0a1 239 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 318 (524)
T ss_dssp BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred chhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhh
Confidence 00 01100 116799999977664211 111222 37888999999999988753322 33
Q ss_pred HHHHHHHhcCCceEEEeecC----CCCCCCeEEEEEEec
Q 010599 461 IKVKKIVGGMRWDTKMVDHE----DGPLVPEKILVAVKQ 495 (506)
Q Consensus 461 ~~~~~~~~~~~w~~~~~~~~----~~~~~~~~~l~~~k~ 495 (506)
..+++.+-.-++-..++..- .+...+-.||+.+|.
T Consensus 319 ~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~ 357 (524)
T d2ar0a1 319 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 357 (524)
T ss_dssp HHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred HHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECC
Confidence 46777544334433344433 233456788888873
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.64 E-value=0.024 Score=55.20 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=62.7
Q ss_pred CCEEEEECCCCChhHHHHhh-C---CcEEEecCccchHHHHHHHHHHcCCC----------------eEEEEeccccCCC
Q 010599 103 VRTALDTGCGVASWGAYLWS-R---NVIAMSFAPRDSHEAQVQFALERGVP----------------AVIGVLGTIKMPY 162 (506)
Q Consensus 103 ~~~VLDiGCG~G~~~~~L~~-~---~v~~vdis~~dl~~~~~~~a~~~~~~----------------~~~~~~d~~~lp~ 162 (506)
+.+|||..||+|..+...+. . .|++.|+++..+.... +....++.. ......|+..+..
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~-~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK-RNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH-HHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHH-HHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 45899999999998886543 3 4788899885543333 333333322 1222333322221
Q ss_pred -CCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 163 -ASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 163 -~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
....||+|..-. + ..+..+|..+.+.++.||+|.++..
T Consensus 125 ~~~~~fDvIDiDP----f-Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----C-CCcHHHHHHHHHHhccCCEEEEEec
Confidence 245799998743 3 2357899999999999999999753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.44 E-value=0.047 Score=46.33 Aligned_cols=93 Identities=15% Similarity=-0.001 Sum_probs=60.3
Q ss_pred CCCCceEEeecCccc-HHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCccceec-c--------ccccCC-CCCCcee
Q 010599 350 SGRYRNIMDMNAGFG-GFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH-D--------WCEAFS-TYPRTYD 417 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G-~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~-~--------~~~~~~-~~p~s~D 417 (506)
.....+||=+|||.- .++..+++ .+ .+|+.+|.+++-++.|++-|....+. + +.+.+. ...+.+|
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G---a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYG---AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhc---ccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 334567999999954 45555544 33 47999999999999999887532221 0 000110 1235688
Q ss_pred EEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 418 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 418 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
+|.- -..-+..+....++|||||++++-
T Consensus 101 ~vid---------~~g~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 101 VTID---------CSGNEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp EEEE---------CSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred eeee---------cCCChHHHHHHHHHHhcCCceEEE
Confidence 8774 123356888899999999999994
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.32 E-value=0.019 Score=49.45 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=66.0
Q ss_pred HHHHHhhhcCCCCCceEEeecCcccHHHHHH-Hh-CCCeEEEEeecCCCcccHHHHHhcCccceecc----ccccCCC-C
Q 010599 340 AYKKINRLLDSGRYRNIMDMNAGFGGFAAAI-QS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHD----WCEAFST-Y 412 (506)
Q Consensus 340 ~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l-~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~----~~~~~~~-~ 412 (506)
-|..++...+..+..+||=+|||.-++++.. ++ .+. -.|+.+|.+++-++.+++-|....+.. +.+.+.. .
T Consensus 16 a~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 16 GAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp HHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhccccccc--ceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHc
Confidence 3555555444455667888999977754443 32 232 356777888889999988875333321 1111111 2
Q ss_pred CCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
++.||+|.- -..-+..+.+..++|||+|.+++-
T Consensus 94 ~gg~D~vid---------~~G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 94 DGGVNFALE---------STGSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TSCEEEEEE---------CSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCCcEEEE---------cCCcHHHHHHHHhcccCceEEEEE
Confidence 467998884 123356888999999999999983
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.081 Score=49.47 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=64.3
Q ss_pred CCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc----Cccc--eeccccccCCC-CC--CceeEE
Q 010599 349 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFST-YP--RTYDLI 419 (506)
Q Consensus 349 ~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r----g~~~--~~~~~~~~~~~-~p--~s~D~v 419 (506)
......+||||+||+|+=+.+|++.-.-...|+++|.++.-+....++ |+.. ..+.-...+.. .+ ..||.|
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~V 170 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI 170 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEE
Confidence 344566799999999997766654100013689999997777655443 4311 11111112222 22 679999
Q ss_pred EEc------ccccccc------CCC--CHH-------HHHHHHhhcccCCcEEEEEe----ChhhHHHHHHHHhcC
Q 010599 420 HAH------GLFSLYK------DKC--NIE-------DILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGGM 470 (506)
Q Consensus 420 ~~~------~~~~~~~------~~~--~~~-------~~l~e~~RvLrPgG~~ii~d----~~~~~~~~~~~~~~~ 470 (506)
.++ +++..-. ... .+. .+|.... .|+|||+|+-+. ..+-.+.|+.++++-
T Consensus 171 L~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~~ 245 (293)
T d2b9ea1 171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQN 245 (293)
T ss_dssp EECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred eecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHhC
Confidence 874 2221100 001 111 2343444 479999877742 334556677777653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.022 Score=52.37 Aligned_cols=51 Identities=6% Similarity=0.171 Sum_probs=41.1
Q ss_pred HhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcC
Q 010599 344 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG 397 (506)
Q Consensus 344 ~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg 397 (506)
+...+.....+.||.+|||+|.++..|++.+ -+|++++.++.+++...++.
T Consensus 13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~ 63 (252)
T d1qyra_ 13 IVSAINPQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHP 63 (252)
T ss_dssp HHHHHCCCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCT
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHh
Confidence 3344455567789999999999999999976 47999999988888887763
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.049 Score=46.39 Aligned_cols=93 Identities=14% Similarity=0.011 Sum_probs=61.8
Q ss_pred CCCceEEeecCcccHHHHHHHh--CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC--------CCCCceeEEE
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS--------TYPRTYDLIH 420 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~--~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~--------~~p~s~D~v~ 420 (506)
....+||=+|||+.+..+.+.. .+ ..+|+.+|.+++-++.|++-|....+..-.+++. +.+..+|+|.
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 4456799999998886555432 33 2478999999999999988875322211111110 1235688887
Q ss_pred EccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 421 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
- -..-+..+......|||||++++-
T Consensus 103 d---------~~G~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 103 E---------CTGAEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp E---------CSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred e---------ccCCchhHHHHHHHhcCCCEEEEE
Confidence 6 123356888899999999999993
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.05 E-value=0.21 Score=42.56 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=64.1
Q ss_pred HHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-------CC
Q 010599 340 AYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TY 412 (506)
Q Consensus 340 ~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-------~~ 412 (506)
-|..++...+.....+||=+|||..++.+....+-....+|+.+|.+++.++.|++-|....+..-.++.. +-
T Consensus 15 a~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 15 GYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhc
Confidence 34444443334455689999999888765543321123579999999999999999886444422112211 12
Q ss_pred CCceeEEEEccccccccCCCCHHHHHHHHhhcccC-CcEEEE
Q 010599 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRP-EGAIII 453 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrP-gG~~ii 453 (506)
++-+|.|.- -......+.+..+.|++ +|.+++
T Consensus 95 ~~G~d~vid---------~~g~~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 95 NGGVDYAVE---------CAGRIETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp TSCBSEEEE---------CSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred CCCCcEEEE---------cCCCchHHHHHHHHHHHhcCceEE
Confidence 355787775 11234566666666655 699888
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.04 E-value=0.14 Score=43.24 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=59.4
Q ss_pred CCCEEEEECCC-CChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC--------C-CCCCCee
Q 010599 102 TVRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM--------P-YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~-~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l--------p-~~~~sfD 168 (506)
++.+||=+||| .|.++..+++. + ++++|.+ +...+.+++.+....+........ . ...+.+|
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~-----~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS-----PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchH-----HHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 44589999998 56666666654 3 5666653 456677887776554432221110 0 1134689
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcCC
Q 010599 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGPP 206 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p~ 206 (506)
+|+-.-. ....+..+.++|+|||.+++.+.+
T Consensus 101 ~vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 101 VTIDCSG-------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EEEECSC-------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eeeecCC-------ChHHHHHHHHHHhcCCceEEEecC
Confidence 9885321 246789999999999999997643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.02 E-value=0.04 Score=46.94 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCCEEEEECCC-CChhHHHHhhC---CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEEEEcCcc
Q 010599 102 TVRTALDTGCG-VASWGAYLWSR---NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-MPYASRAFDMAHCSRCL 176 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~---~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~-lp~~~~sfDlV~~~~~l 176 (506)
++.+||-+|+| .|.++..+++. .++++|.++. ..+.+++.|....+...+... ..-..+.||.|+..-..
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR-----KREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST-----THHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchh-----HHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 45589999998 66777777654 4667777653 345666667654433222111 11124579998864221
Q ss_pred cccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 177 IPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 177 ~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
.+ ...+....++|+|||.+++.+
T Consensus 102 ~~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 102 LT-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp ST-----TCCTTTGGGGEEEEEEEEECC
T ss_pred Cc-----cchHHHHHHHhhccceEEEec
Confidence 11 112456789999999999975
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.056 Score=50.20 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=48.9
Q ss_pred hcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhc--C--ccceeccccccCCCCC-CceeEEEE
Q 010599 347 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--G--LIGIYHDWCEAFSTYP-RTYDLIHA 421 (506)
Q Consensus 347 ~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~r--g--~~~~~~~~~~~~~~~p-~s~D~v~~ 421 (506)
.++.....+||++|+|+|.++..|++.+ .+|++++..+++++...++ + ....+.-...++-.++ ..++.|.+
T Consensus 16 ~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~~~vV~ 92 (278)
T d1zq9a1 16 KAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVA 92 (278)
T ss_dssp HTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEE
T ss_pred HhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhhhhhhc
Confidence 3444556789999999999999999875 4788999998888877664 1 1122222234444444 44566666
Q ss_pred c
Q 010599 422 H 422 (506)
Q Consensus 422 ~ 422 (506)
+
T Consensus 93 N 93 (278)
T d1zq9a1 93 N 93 (278)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.84 E-value=0.056 Score=52.00 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=61.4
Q ss_pred ceEEeecCcccHHHH--------HHHh-------CCCeEEEEeecCCCcccHHHHHhcCc-----cc--eeccccccCCC
Q 010599 354 RNIMDMNAGFGGFAA--------AIQS-------SKLWVMNVVPTLADKNTLGVIYERGL-----IG--IYHDWCEAFST 411 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~--------~l~~-------~~~~~~~v~~~d~~~~~l~~~~~rg~-----~~--~~~~~~~~~~~ 411 (506)
-+|.|+||..|.-+. ++.+ .......|.=-|.+.|--+..+..-. .+ .+..+...|-.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 368999999998642 2221 23456788888888777776664410 00 00001122211
Q ss_pred --CC-CceeEEEEccccccccCCC------------------------------CHHHHHHHHhhcccCCcEEEE
Q 010599 412 --YP-RTYDLIHAHGLFSLYKDKC------------------------------NIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 412 --~p-~s~D~v~~~~~~~~~~~~~------------------------------~~~~~l~e~~RvLrPgG~~ii 453 (506)
+| +|.|++||+..++++.+.. |+..+|+-=.+-|+|||.+++
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 56 9999999999998764311 111255555677899999999
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.64 E-value=0.41 Score=40.35 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=56.7
Q ss_pred CCCEEEEECC--CCChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccc---cC--CCCCCCeeEEE
Q 010599 102 TVRTALDTGC--GVASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KM--PYASRAFDMAH 171 (506)
Q Consensus 102 ~~~~VLDiGC--G~G~~~~~L~~~-~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~---~l--p~~~~sfDlV~ 171 (506)
++.+||-.|+ |.|..+..+++. + +++++-+ +...+.+++.|....+...+.. .+ ....+.||+|+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~-----~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT-----EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEeccccccccccccccccCccccccccc-----ccccccccccCcccccccccccHHHHhhhhhccCCceEEe
Confidence 4559999997 456777777764 4 4444332 3455677777765444221110 00 12356799999
Q ss_pred EcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 172 CSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 172 ~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
..- ....+....++|+|+|.++..+
T Consensus 103 d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 103 EML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred ecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 742 1346888999999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.52 E-value=0.21 Score=42.62 Aligned_cols=104 Identities=6% Similarity=-0.016 Sum_probs=63.3
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-------CCC
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TYP 413 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-------~~p 413 (506)
|..+..........+|+=+|||..+..+....+-.-..+|+.+|.+++.++.|++-|....++.-.++.. +.+
T Consensus 18 ~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 18 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTG 97 (176)
T ss_dssp HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcc
Confidence 4444443334455689999999887655443321112589999999999999999986544432211111 133
Q ss_pred CceeEEEEccccccccCCCCHHHHHHH-HhhcccCCcEEEE
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLE-MDRILRPEGAIII 453 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e-~~RvLrPgG~~ii 453 (506)
+-+|+|.- -..-...+.+ +..++|++|.+++
T Consensus 98 ~G~d~vi~---------~~g~~~~~~~a~~~~~~~~G~~v~ 129 (176)
T d1d1ta2 98 NNVGYTFE---------VIGHLETMIDALASCHMNYGTSVV 129 (176)
T ss_dssp SCCCEEEE---------CSCCHHHHHHHHTTSCTTTCEEEE
T ss_pred ccceEEEE---------eCCchHHHHHHHHHhhcCCeEEEE
Confidence 66887764 2233445555 4455566699988
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.39 E-value=0.15 Score=43.31 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=60.4
Q ss_pred CCceEEeecCcccHHHHHH-Hh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-----CCCCceeEEEEccc
Q 010599 352 RYRNIMDMNAGFGGFAAAI-QS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-----TYPRTYDLIHAHGL 424 (506)
Q Consensus 352 ~~~~vLD~gcG~G~~~~~l-~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-----~~p~s~D~v~~~~~ 424 (506)
+..+||=+|||..+..+.. ++ .+ ...|+.+|.+++-++.+++-|....+..-.+.+. +-++-+|+|.-
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g--~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid--- 106 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMT--PATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMD--- 106 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHC--CCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEE---
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhc--CcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEE---
Confidence 3467999999988765433 32 23 2467888888888999988775333322111111 12256898885
Q ss_pred cccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 425 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 425 ~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-..-...+....+.|||||++++-
T Consensus 107 ------~~g~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 107 ------FVGSQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp ------SSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred ------ecCcchHHHHHHHHHhCCCEEEEE
Confidence 223355789999999999999983
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.28 E-value=0.046 Score=53.06 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=62.6
Q ss_pred CceEEeecCcccHHHHHH-HhCCCeEEEEeecCCCcccHHHHHhcC-ccce-----------------ecccccc----C
Q 010599 353 YRNIMDMNAGFGGFAAAI-QSSKLWVMNVVPTLADKNTLGVIYERG-LIGI-----------------YHDWCEA----F 409 (506)
Q Consensus 353 ~~~vLD~gcG~G~~~~~l-~~~~~~~~~v~~~d~~~~~l~~~~~rg-~~~~-----------------~~~~~~~----~ 409 (506)
..+|||+.||+|.++.+. .+.++ -.|+..|.+++.++.+.+.- +.+. ...-+.+ +
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 457999999999999854 44443 47999999999999887541 1100 0000111 1
Q ss_pred CCCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEEe
Q 010599 410 STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 455 (506)
Q Consensus 410 ~~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~d 455 (506)
..-...||+|..+- .-.....|.-.-|.+|.||.|.|+-
T Consensus 124 ~~~~~~fDvIDiDP-------fGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 124 AERHRYFHFIDLDP-------FGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHSTTCEEEEEECC-------SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcCcCCcccCCC-------CCCcHHHHHHHHHHhccCCEEEEEe
Confidence 11235799999832 2244568888889999999999963
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.08 E-value=0.22 Score=42.48 Aligned_cols=103 Identities=8% Similarity=-0.110 Sum_probs=65.4
Q ss_pred HHHHhhhcCCCCCceEEeecCcccH-HHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-------CC
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TY 412 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~-~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-------~~ 412 (506)
|..+..........+||=+|||.=+ ++..+++. ...-.|+.+|.++.-++.|++-|....+..-.++-. +.
T Consensus 17 ~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~-~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 17 YGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKI-AGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELT 95 (174)
T ss_dssp HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHH-hCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhh
Confidence 4444333333445679999999844 45444442 122478888999999999999886444322111100 12
Q ss_pred CCceeEEEEccccccccCCCCHHHHHHHHhhcccCC-cEEEE
Q 010599 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPE-GAIII 453 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPg-G~~ii 453 (506)
++-+|+|.= -..-+.++.+..+.|||| |.+++
T Consensus 96 ~~G~d~vie---------~~G~~~~~~~a~~~~~~g~G~~v~ 128 (174)
T d1e3ia2 96 AGGVDYSLD---------CAGTAQTLKAAVDCTVLGWGSCTV 128 (174)
T ss_dssp TSCBSEEEE---------SSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred cCCCcEEEE---------ecccchHHHHHHHHhhcCCeEEEe
Confidence 356788764 123466899999999997 99998
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.01 E-value=0.078 Score=45.54 Aligned_cols=103 Identities=22% Similarity=0.182 Sum_probs=64.8
Q ss_pred HHHHhhhcCCCCCceEEeecCcc-cHHHHHHHhC-CCeEEEEeecCCCcccHHHHHhcCccceecccccc-------CCC
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-------FST 411 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~-G~~~~~l~~~-~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~-------~~~ 411 (506)
|..+..........+||-+|||. |.++..+++. | ..+|+.+|.+++.++.+++-|.-..+....++ +..
T Consensus 17 ~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 17 YHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp HHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCccchhheecccccc--cccccccccccccccccccccceEEEeccccchHHHHHHHHH
Confidence 44443333334457899999984 5566666553 3 23789999999999999888753222221121 111
Q ss_pred --CCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 412 --YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 412 --~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.+..+|+|.-.. .-+..+....+.|||||++++-
T Consensus 95 ~~~~~g~Dvvid~v---------G~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 95 ITHGRGADFILEAT---------GDSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HTTTSCEEEEEECS---------SCTTHHHHHHHHEEEEEEEEEC
T ss_pred hhCCCCceEEeecC---------CchhHHHHHHHHhcCCCEEEEE
Confidence 125699887511 1133788888999999999873
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.72 E-value=0.095 Score=47.09 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=44.5
Q ss_pred CCCCC-CceeEEEEcccccc----ccCCCC-------HHHHHHHHhhcccCCcEEEEEeChhhHHHHHHHHhcCCceEE
Q 010599 409 FSTYP-RTYDLIHAHGLFSL----YKDKCN-------IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 475 (506)
Q Consensus 409 ~~~~p-~s~D~v~~~~~~~~----~~~~~~-------~~~~l~e~~RvLrPgG~~ii~d~~~~~~~~~~~~~~~~w~~~ 475 (506)
+..+| +|+|+|+++-=+.. +....+ +...+.|+.|+|||||.+++-........+...+...+|...
T Consensus 16 l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 94 (256)
T d1g60a_ 16 LDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQ 94 (256)
T ss_dssp HHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEE
T ss_pred HhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhhhhhhcccceee
Confidence 34455 89999998533221 111112 235899999999999999876655556666677777788744
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.59 E-value=0.32 Score=42.20 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=59.9
Q ss_pred CCCEEEEECCCC-ChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 010599 102 TVRTALDTGCGV-ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMP--------YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG~-G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sfD 168 (506)
++.+||-+|||. |..+..+++. .++++|.++ ...+.|++.|....+ +....+ .....+|
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~-----~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP-----ARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc-----hhhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCcE
Confidence 455999999997 5566666643 367777743 556778877754322 221111 1244699
Q ss_pred EEEEcCccc------c--cCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 169 MAHCSRCLI------P--WGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~------~--~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+++-.-... + ........++.+.++++|||.+++.+
T Consensus 97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 999532110 0 11122578999999999999999975
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.38 E-value=0.16 Score=43.41 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=57.8
Q ss_pred CCCEEEEECCCC-ChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecc------ccCCCCCCCeeEE
Q 010599 102 TVRTALDTGCGV-ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGT------IKMPYASRAFDMA 170 (506)
Q Consensus 102 ~~~~VLDiGCG~-G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~------~~lp~~~~sfDlV 170 (506)
++.+||=+|||. |.++..+++. .|+++|.++ ...+.+++.|....+...+. .++ .....||+|
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~-----~r~~~a~~lGa~~~i~~~~~~~~~~v~~~-t~g~G~D~v 100 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP-----ICVEAAKFYGATDILNYKNGHIEDQVMKL-TNGKGVDRV 100 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH-----HHHHHHHHHTCSEEECGGGSCHHHHHHHH-TTTSCEEEE
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchh-----hhHHHHHhhCccccccccchhHHHHHHHH-hhccCcceE
Confidence 345788899985 7778888775 467777643 45667777775433321111 011 123459999
Q ss_pred EEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 171 HCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 171 ~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+-.-.. ...+.+..+.|+|+|.+++.+
T Consensus 101 id~~g~-------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 101 IMAGGG-------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred EEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 864321 246788899999999999965
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.35 E-value=0.3 Score=41.59 Aligned_cols=91 Identities=22% Similarity=0.360 Sum_probs=57.0
Q ss_pred CCCEEEEECCC-CChhHHHHhhC-C---cEEEecCccchHHHHHHHHHHcCCCeEEEEeccc--c----C-C-CCCCCee
Q 010599 102 TVRTALDTGCG-VASWGAYLWSR-N---VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--K----M-P-YASRAFD 168 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~-~---v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~--~----l-p-~~~~sfD 168 (506)
++.+||-+|+| .|.++..+++. + |+++|.++ ...+.+++.|....+...+.. . + . .....+|
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~D 102 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP-----NRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGAD 102 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCCccchhheeccccccccccccccccc-----ccccccccccceEEEeccccchHHHHHHHHHhhCCCCce
Confidence 45699999997 36667777664 3 56666643 455677777765443222110 0 0 0 1234699
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|+..-.. ...++...+.|+|||.+++.+
T Consensus 103 vvid~vG~-------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 103 FILEATGD-------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred EEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence 99864211 346788999999999998864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.06 E-value=0.44 Score=40.25 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=59.1
Q ss_pred HHhhCCCCCCCCCEEEEECCCCC-hhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC-----C
Q 010599 92 LASVIPIKNGTVRTALDTGCGVA-SWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM-----P 161 (506)
Q Consensus 92 i~~~l~~~~~~~~~VLDiGCG~G-~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l-----p 161 (506)
+.+.... .++.+||=+|||.- ..+..+++. .+.++|.+ +...+.+++.|....+. .+..+. .
T Consensus 20 ~~~~~~~--~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~-----~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~ 91 (174)
T d1f8fa2 20 CINALKV--TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV-----ESRLELAKQLGATHVIN-SKTQDPVAAIKE 91 (174)
T ss_dssp HHTTTCC--CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC-----HHHHHHHHHHTCSEEEE-TTTSCHHHHHHH
T ss_pred HHHhhCC--CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccH-----HHHHHHHHHcCCeEEEe-CCCcCHHHHHHH
Confidence 3444433 34558999999743 455555543 24555654 35566777777644332 121111 1
Q ss_pred CCCCCeeEEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 162 YASRAFDMAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 162 ~~~~sfDlV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+.++.||+|+-.-. ....++...++++|+|.+++.+
T Consensus 92 ~t~gg~D~vid~~G-------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 92 ITDGGVNFALESTG-------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HTTSCEEEEEECSC-------CHHHHHHHHHTEEEEEEEEECC
T ss_pred HcCCCCcEEEEcCC-------cHHHHHHHHhcccCceEEEEEe
Confidence 23457999985321 2567889999999999999875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.76 E-value=0.55 Score=39.78 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=60.9
Q ss_pred CCCCEEEEECCCC-ChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC------CCCCCCeeE
Q 010599 101 GTVRTALDTGCGV-ASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM------PYASRAFDM 169 (506)
Q Consensus 101 ~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l------p~~~~sfDl 169 (506)
.++.+||=+|||. |.++..+++. .++++|.++ ...+.+++-|....+........ -...+.+|+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING-----EKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-----GGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch-----HHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 3455899999986 7777777765 366777755 34567777776544421111111 012456899
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCC-eEEEEEcCC
Q 010599 170 AHCSRCLIPWGANDGRYMIEVDRVLRPG-GYWVLSGPP 206 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPG-G~li~~~p~ 206 (506)
|+-.-. ....+.+..+.|+|| |.+++.+.+
T Consensus 102 vie~~G-------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 102 SLDCAG-------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp EEESSC-------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred EEEecc-------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 985321 256789999999996 999997643
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.29 Score=41.43 Aligned_cols=115 Identities=11% Similarity=0.144 Sum_probs=72.3
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCCCCCceEEeecCc--ccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceec-
Q 010599 327 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG--FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH- 403 (506)
Q Consensus 327 f~~~~~~W~~~v~~y~~~~~~i~~~~~~~vLD~gcG--~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~- 403 (506)
|++-....-..+.-|..+.......+..+||=.|+| .|.++..|++. ...+|+.++.+++.++.+++-|....+.
T Consensus 3 fe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~ 80 (179)
T d1qora2 3 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVINY 80 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCeEEEEC
Confidence 444444555555666666543333345688888666 45566666653 3368999999989999998888533321
Q ss_pred ---cccccCC--CCCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 404 ---DWCEAFS--TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 404 ---~~~~~~~--~~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
++.+.+- +-+.-+|+|.-.. . ...+....+.|+|+|.+++
T Consensus 81 ~~~d~~~~v~~~t~g~g~d~v~d~~---------g-~~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 81 REEDLVERLKEITGGKKVRVVYDSV---------G-RDTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp TTSCHHHHHHHHTTTCCEEEEEECS---------C-GGGHHHHHHTEEEEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCeEEEEeCc---------c-HHHHHHHHHHHhcCCeeee
Confidence 2222221 1247899888611 1 2367788999999999887
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.13 E-value=0.14 Score=43.34 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCCCceEEeecCcc-cHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC-CceeEEEEccccc
Q 010599 350 SGRYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 426 (506)
Q Consensus 350 ~~~~~~vLD~gcG~-G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p-~s~D~v~~~~~~~ 426 (506)
.....+||=+|||. |.++..+++ .+ .+++.+|.+++.++.+++-|....+....+...... +.||.+.-..
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~G---a~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~--- 101 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMG---AHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV--- 101 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC---
T ss_pred CCCCCEEEEeccchHHHHHHHHhhccc---ccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeee---
Confidence 34456788889875 445555554 34 456677778788898888775433332222211122 6799877511
Q ss_pred cccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 427 LYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 427 ~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-...+....++|+|||++++-
T Consensus 102 ------g~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 102 ------AAPHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ------SSCCCHHHHHTTEEEEEEEEEC
T ss_pred ------ecchhHHHHHHHHhcCCEEEEe
Confidence 1122466777899999999994
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.08 E-value=0.69 Score=38.85 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=64.7
Q ss_pred HHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCC-------CCC
Q 010599 341 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TYP 413 (506)
Q Consensus 341 y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~-------~~p 413 (506)
|..+....+.....+||=+|||.++..+.+..+.....+|+.+|.+++.++.+++.|....++...++-. +.+
T Consensus 17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2jhfa2 17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSN 96 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhc
Confidence 5555443344455679999998777554443322234689999999999999999986544433221100 123
Q ss_pred CceeEEEEccccccccCCCCHHHHHHHHhhcccCC-cEEEE
Q 010599 414 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPE-GAIII 453 (506)
Q Consensus 414 ~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPg-G~~ii 453 (506)
+-+|+|.-. ......+......+++| |.+++
T Consensus 97 ~G~D~vid~---------~G~~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 97 GGVDFSFEV---------IGRLDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp SCBSEEEEC---------SCCHHHHHHHHHHBCTTTCEEEE
T ss_pred CCCCEEEec---------CCchhHHHHHHHHHhcCCcceEE
Confidence 578988761 12345667777888886 56666
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.71 E-value=0.43 Score=39.72 Aligned_cols=93 Identities=14% Similarity=0.008 Sum_probs=58.6
Q ss_pred CCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccC----CC-CCCceeEEEEcccc
Q 010599 351 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF----ST-YPRTYDLIHAHGLF 425 (506)
Q Consensus 351 ~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~----~~-~p~s~D~v~~~~~~ 425 (506)
.+..+||=.|||.-++++....+. +...|+.++.+++-++.+++-|....+..-.+++ .. .++-+|+|.+.
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--- 101 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA--- 101 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS---
T ss_pred CCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec---
Confidence 345678889999887655443221 2246888899989999998877533332111111 11 12345555441
Q ss_pred ccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 426 SLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 426 ~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-...+....+.|||||.+++-
T Consensus 102 -------~~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 102 -------VSKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp -------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred -------CCHHHHHHHHHHhccCCceEec
Confidence 1245789999999999999993
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.47 E-value=0.51 Score=39.57 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=58.1
Q ss_pred CCCEEEEECCCCC-hhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEecccc------CC-CCCCCeeE
Q 010599 102 TVRTALDTGCGVA-SWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK------MP-YASRAFDM 169 (506)
Q Consensus 102 ~~~~VLDiGCG~G-~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~------lp-~~~~sfDl 169 (506)
++.+||=+|||.. .++..++.. .++++|.+ +...+.+++.|........+... +. -....+|+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~-----~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS-----ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC-----HHHHHHHHHhCCcccccccccccccccccccccCCCCceE
Confidence 4458999999754 455555543 36666664 45667888877655443221110 00 01346899
Q ss_pred EEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 170 AHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 170 V~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
|+..-. ....++.+.+.+++||.+++.+.
T Consensus 101 vid~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 101 TIECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp EEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEeccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 886431 25678999999999999999764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.33 E-value=0.23 Score=41.72 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCCCceEEeecC-c-ccHHHHHHHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccC------CCCCCceeEE
Q 010599 349 DSGRYRNIMDMNA-G-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF------STYPRTYDLI 419 (506)
Q Consensus 349 ~~~~~~~vLD~gc-G-~G~~~~~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~------~~~p~s~D~v 419 (506)
+.....+||=+|| | .|.++..+++ .+. ..|+.++.+++-++.+.+-|....+..-.+++ .+.+..||+|
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~v 101 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAV 101 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCCEEEEEeccccceeeeeeccccccc--ccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhh
Confidence 4445578999997 4 4444444433 332 46888888888899998877422221101111 0134679988
Q ss_pred EEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 420 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.- -..-+..+....+.|||||.+++-
T Consensus 102 id---------~~g~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 102 ID---------LNNSEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EE---------SCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred hc---------ccccchHHHhhhhhcccCCEEEEe
Confidence 86 123356788889999999999984
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.46 E-value=0.38 Score=40.72 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=63.6
Q ss_pred HHHHHHHhhhcCCCCCceEEeecC--cccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC----
Q 010599 338 VNAYKKINRLLDSGRYRNIMDMNA--GFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST---- 411 (506)
Q Consensus 338 v~~y~~~~~~i~~~~~~~vLD~gc--G~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~---- 411 (506)
+.-|..+.......+..+||=.|+ |.|.++..|+.. ....|+.++.+++.++.+++.|....+....+++..
T Consensus 11 ~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~--~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 11 LTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILE 88 (183)
T ss_dssp HHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhcc--ccccceeeecccccccccccccccccccCCccCHHHHHHH
Confidence 334555544333444567887663 455566666652 124666666677788888888753333221222211
Q ss_pred --CCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 412 --YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 412 --~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
-++-||+|+. ... ...+.+..++|||+|+++.-
T Consensus 89 ~t~~~g~d~v~d--------~~g--~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 89 LTDGYGVDVVLN--------SLA--GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HTTTCCEEEEEE--------CCC--THHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCEEEEEe--------ccc--chHHHHHHHHhcCCCEEEEE
Confidence 2367999997 111 24778889999999999983
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.80 E-value=0.34 Score=40.44 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=56.8
Q ss_pred CCCCceEEeecCcccHHHH-HHHh-CCCeEEEEeecCCCcccHHHHHhcCccceeccccccC----CC-CCCceeEEEEc
Q 010599 350 SGRYRNIMDMNAGFGGFAA-AIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF----ST-YPRTYDLIHAH 422 (506)
Q Consensus 350 ~~~~~~vLD~gcG~G~~~~-~l~~-~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~----~~-~p~s~D~v~~~ 422 (506)
..+..+||=+|||.=++++ .+++ .+ .+|+.+|.+++.++.+++-|....+..-.+++ .. ..+.+|.|.+
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G---~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~- 100 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMG---LHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVT- 100 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEEC-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcC---CccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccc-
Confidence 3445678889998766544 3333 33 57899999999999999887533332111111 00 1233444444
Q ss_pred cccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 423 GLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 423 ~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
+.-...+....+.|||||++++
T Consensus 101 ---------~~~~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 101 ---------AVSNSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp ---------CSCHHHHHHHHTTEEEEEEEEE
T ss_pred ---------cccchHHHHHHHHhcCCcEEEE
Confidence 1224578888899999999998
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=85.73 E-value=0.37 Score=40.88 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=59.5
Q ss_pred CCCceEEeecCcc-cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc----CCC-CC-CceeEEEEcc
Q 010599 351 GRYRNIMDMNAGF-GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA----FST-YP-RTYDLIHAHG 423 (506)
Q Consensus 351 ~~~~~vLD~gcG~-G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~----~~~-~p-~s~D~v~~~~ 423 (506)
.+..+||=+|||. |.++..+++.-. .-+|+.+|.+++-++.+++-|....++.-.+. +-. .+ .-+|+|.-..
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 3445688899997 666666665311 13588899998889999887753332221111 111 12 5599887511
Q ss_pred ccccccCCCCHHHHHHHHhhcccCCcEEEEE
Q 010599 424 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR 454 (506)
Q Consensus 424 ~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii~ 454 (506)
.-...+.+..++|||||.+++-
T Consensus 105 ---------g~~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 105 ---------GGSETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp ---------SCTTHHHHHHHHEEEEEEEEEC
T ss_pred ---------CCHHHHHHHHHHHhcCCEEEEE
Confidence 1123677778999999999993
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.50 E-value=0.43 Score=40.01 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=55.1
Q ss_pred CCCEEEEECCC-CChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEEcCccc
Q 010599 102 TVRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYASRAFDMAHCSRCLI 177 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~-~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlV~~~~~l~ 177 (506)
++.+||=+||| .|.++..+++. + +++++.++. ..+.+++.|....+...+........+.+|.|+..-..
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~-----~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~- 103 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA-----KREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA- 103 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG-----GHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS-
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchh-----HHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec-
Confidence 45588889986 45677777664 4 455555432 33566666665443322211111223579999864321
Q ss_pred ccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 178 PWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 178 ~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
...+....++|+|||.+++.+
T Consensus 104 ------~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 104 ------PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ------CCCHHHHHTTEEEEEEEEECC
T ss_pred ------chhHHHHHHHHhcCCEEEEec
Confidence 123678889999999999975
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=85.42 E-value=1.2 Score=37.05 Aligned_cols=105 Identities=7% Similarity=-0.043 Sum_probs=62.2
Q ss_pred HHHHHhhhcCCCCCceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCC-------C
Q 010599 340 AYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-------Y 412 (506)
Q Consensus 340 ~y~~~~~~i~~~~~~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~-------~ 412 (506)
-|..+..........+|+=+|||.++..+.+..+..-..+|+.+|.+++-++.+.+-|....+..-.++... -
T Consensus 16 ay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~ 95 (175)
T d1cdoa2 16 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMT 95 (175)
T ss_dssp HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhc
Confidence 355554433445556899999999776555433222235799999999999999999854443221121110 1
Q ss_pred CCceeEEEEccccccccCCCCHHHHHHHHhhcccCC-cEEEE
Q 010599 413 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPE-GAIII 453 (506)
Q Consensus 413 p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPg-G~~ii 453 (506)
++-+|+|.- -..-..++......+++| |.+++
T Consensus 96 ~~G~d~vid---------~~G~~~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 96 NGGVDFSLE---------CVGNVGVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp TSCBSEEEE---------CSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred cCCcceeee---------ecCCHHHHHHHHHHhhCCCcceeE
Confidence 245787764 122345666666776666 44444
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.93 E-value=1.4 Score=36.74 Aligned_cols=104 Identities=8% Similarity=-0.096 Sum_probs=62.3
Q ss_pred HHHHHhhhcCCCCCceEEeecCcccHHHH-HHHhCCCeEEEEeecCCCcccHHHHHhcCccceecccccc--C-----CC
Q 010599 340 AYKKINRLLDSGRYRNIMDMNAGFGGFAA-AIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA--F-----ST 411 (506)
Q Consensus 340 ~y~~~~~~i~~~~~~~vLD~gcG~G~~~~-~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~--~-----~~ 411 (506)
-|..+.......+..+||=+|||..+..+ .+++. .....|+.+|.+++.++.+++=|....+...-+. + .+
T Consensus 16 ay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~-~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2fzwa2 16 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKV-AGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEM 94 (176)
T ss_dssp HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHH-HhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHH
Confidence 35555443333445678888888554433 33331 1124688888998899999987854433221110 0 11
Q ss_pred CCCceeEEEEccccccccCCCCHHHHHHHHhhcccCCcEEEE
Q 010599 412 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 453 (506)
Q Consensus 412 ~p~s~D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrPgG~~ii 453 (506)
.++-+|+|.- --.-..++.....++++||.+++
T Consensus 95 ~~~g~D~vid---------~~G~~~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 95 TDGGVDYSFE---------CIGNVKVMRAALEACHKGWGVSV 127 (176)
T ss_dssp TTSCBSEEEE---------CSCCHHHHHHHHHTBCTTTCEEE
T ss_pred cCCCCcEeee---------cCCCHHHHHHHHHhhcCCceeEE
Confidence 3466898885 11235678889999999987765
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.66 E-value=0.58 Score=39.07 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=56.1
Q ss_pred CCCCEEEEECCC--CChhHHHHhhC----CcEEEecCccchHHHHHHHHHHcCCCeEEEEeccccC------CCCCCCee
Q 010599 101 GTVRTALDTGCG--VASWGAYLWSR----NVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKM------PYASRAFD 168 (506)
Q Consensus 101 ~~~~~VLDiGCG--~G~~~~~L~~~----~v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~l------p~~~~sfD 168 (506)
.++.+||=+||+ .|..+..++.. .+++++.+ +...+++++.|....+. .+..+. -...+.||
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~-----~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR-----EEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS-----HHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccc-----hhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcccch
Confidence 345589999973 44555555543 35556654 35566777777654332 121111 01245699
Q ss_pred EEEEcCcccccCCChHHHHHHHHHhcCCCeEEEEEc
Q 010599 169 MAHCSRCLIPWGANDGRYMIEVDRVLRPGGYWVLSG 204 (506)
Q Consensus 169 lV~~~~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~ 204 (506)
+|+.... ....++.+.+.|+|||.+++.+
T Consensus 100 ~vid~~g-------~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 100 AVIDLNN-------SEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp EEEESCC-------CHHHHTTGGGGEEEEEEEEECC
T ss_pred hhhcccc-------cchHHHhhhhhcccCCEEEEec
Confidence 9987432 2566788899999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.58 E-value=0.61 Score=38.79 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=53.2
Q ss_pred CCCEEEEECCC-CChhHHHHhhC-C--cEEEecCccchHHHHHHHHHHcCCCeEEEEecccc---C-CCCCCCeeEEEEc
Q 010599 102 TVRTALDTGCG-VASWGAYLWSR-N--VIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---M-PYASRAFDMAHCS 173 (506)
Q Consensus 102 ~~~~VLDiGCG-~G~~~~~L~~~-~--v~~vdis~~dl~~~~~~~a~~~~~~~~~~~~d~~~---l-p~~~~sfDlV~~~ 173 (506)
++.+||=+|+| .|..+..+++. + ++++|.+ +...+.+++.|....+...+... + ....+.+|.|.+.
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~-----~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID-----DAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecch-----hhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence 45588889987 34556666554 4 5556553 45567777777654432111110 0 0112334455443
Q ss_pred CcccccCCChHHHHHHHHHhcCCCeEEEEEcC
Q 010599 174 RCLIPWGANDGRYMIEVDRVLRPGGYWVLSGP 205 (506)
Q Consensus 174 ~~l~~~~~~~~~~l~e~~rvLkPGG~li~~~p 205 (506)
. ....+....+.|+|||.+++.+.
T Consensus 102 ~--------~~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 102 V--------SNSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp S--------CHHHHHHHHTTEEEEEEEEECCC
T ss_pred c--------cchHHHHHHHHhcCCcEEEEEEe
Confidence 2 14568889999999999998753
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.11 E-value=1.4 Score=36.54 Aligned_cols=105 Identities=16% Similarity=0.278 Sum_probs=67.2
Q ss_pred eEEeecCcc-cH-HHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC-CCceeEEEEccccccccCC
Q 010599 355 NIMDMNAGF-GG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY-PRTYDLIHAHGLFSLYKDK 431 (506)
Q Consensus 355 ~vLD~gcG~-G~-~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~-p~s~D~v~~~~~~~~~~~~ 431 (506)
+|+=+|||. |+ +|..|.+.+ +..+|++.|.+++.++.+.+.|.+.... ...... ....|+|.. . .+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g-~~~~I~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~dlIil----a--~p~ 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDLGIIDEGT---TSIAKVEDFSPDFVML----S--SPV 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHTTSCSEEE---SCGGGGGGTCCSEEEE----C--SCH
T ss_pred EEEEEccCHHHHHHHHHHHhcC-CCeEEEEEECChHHHHHHHHhhcchhhh---hhhhhhhccccccccc----c--CCc
Confidence 466789986 44 566777765 3457999999999999999998754331 111112 246788876 1 112
Q ss_pred CCHHHHHHHHhhcccCCcEEEEEeC--hhhHHHHHHHHhc
Q 010599 432 CNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGG 469 (506)
Q Consensus 432 ~~~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~~ 469 (506)
.....++.++...|+|+-.++-.-. ....+.+++.+..
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~ 112 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK 112 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 2355789999999998865544322 3355666665543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=82.59 E-value=6.8 Score=35.55 Aligned_cols=136 Identities=17% Similarity=0.169 Sum_probs=78.8
Q ss_pred ceEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCC----CceeEEEEc---cccc
Q 010599 354 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP----RTYDLIHAH---GLFS 426 (506)
Q Consensus 354 ~~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p----~s~D~v~~~---~~~~ 426 (506)
-+|||+=||.|++...|...|.. -|.++|..+..++.-.... .... +.++...+ ..+|+|+++ .-||
T Consensus 12 lrv~~lFsG~Gg~~~gl~~aG~~--~v~a~e~d~~a~~~~~~N~-~~~~---~~Di~~~~~~~~~~~Dll~ggpPCq~fS 85 (327)
T d2c7pa1 12 LRFIDLFAGLGGFRLALESCGAE--CVYSNEWDKYAQEVYEMNF-GEKP---EGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCE--EEEEECCCHHHHHHHHHHH-SCCC---BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CeEEEECccccHHHHHHHHCCCe--EEEEEeCCHHHHHHHHHHC-CCCC---cCchhcCchhhcceeeeeecccccchhh
Confidence 36999999999999999988853 3567888766555433321 1111 12222222 468999884 2344
Q ss_pred ccc-------CCCCHHHHHHHHhhcccCCcEEEEE--------eChhhHHHHHHHHhcCCceEE--EeecC--CCCCCCe
Q 010599 427 LYK-------DKCNIEDILLEMDRILRPEGAIIIR--------DEVDEIIKVKKIVGGMRWDTK--MVDHE--DGPLVPE 487 (506)
Q Consensus 427 ~~~-------~~~~~~~~l~e~~RvLrPgG~~ii~--------d~~~~~~~~~~~~~~~~w~~~--~~~~~--~~~~~~~ 487 (506)
... .+..+-..+.++-+.+||. ++++- +.....+.+...+..+++.+. +.+.. .-|+.++
T Consensus 86 ~ag~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~ 164 (327)
T d2c7pa1 86 ISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRE 164 (327)
T ss_dssp TTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCE
T ss_pred hhhhhcCCcccchhHHHHHHHHHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhh
Confidence 322 3334445566666778995 44442 222355667777777776644 33333 2344454
Q ss_pred -EEEEEEecc
Q 010599 488 -KILVAVKQY 496 (506)
Q Consensus 488 -~~l~~~k~~ 496 (506)
.++++.|+-
T Consensus 165 R~fivg~r~~ 174 (327)
T d2c7pa1 165 RIYMICFRND 174 (327)
T ss_dssp EEEEEEEBGG
T ss_pred hheeeeeccC
Confidence 456776643
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.05 E-value=4.3 Score=37.06 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=70.3
Q ss_pred eEEeecCcccHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCC-----C-CceeEEEEc---ccc
Q 010599 355 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY-----P-RTYDLIHAH---GLF 425 (506)
Q Consensus 355 ~vLD~gcG~G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~-----p-~s~D~v~~~---~~~ 425 (506)
+|+|+=||.|++...|...|+..--|.++|..+..++.-... ... ....++++... + ..+|+++++ .-|
T Consensus 4 kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n-~~~-~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-FPH-TQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-CTT-SCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred EEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH-CCC-CCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 599999999999988877664323356778876555543322 111 11122333322 2 368999874 234
Q ss_pred ccccCCCCH----HHHHHHHhhcc-----cCCcEEEEEeChh------hHHHHHHHHhcCCceEEE--eecCC--CCCCC
Q 010599 426 SLYKDKCNI----EDILLEMDRIL-----RPEGAIIIRDEVD------EIIKVKKIVGGMRWDTKM--VDHED--GPLVP 486 (506)
Q Consensus 426 ~~~~~~~~~----~~~l~e~~RvL-----rPgG~~ii~d~~~------~~~~~~~~~~~~~w~~~~--~~~~~--~~~~~ 486 (506)
|....+-.+ ..++.|+.|++ ||- ++++ +.+. ..+.|.+.++.+++++.. ++..+ -|+.+
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~-ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vlna~dyGvPQ~R 159 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILL-ENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSR 159 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS-EEEE-EEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCC
T ss_pred cccccccccccccccccchhhhhHhhhcCCCc-eeee-eccCCcccchhhHHHHhhhhccccccceeeeeccccCCcccc
Confidence 433322111 12556666665 575 4444 3322 356677778888887663 33331 24444
Q ss_pred eE-EEEEEe
Q 010599 487 EK-ILVAVK 494 (506)
Q Consensus 487 ~~-~l~~~k 494 (506)
+. ++++.+
T Consensus 160 ~Rvfivg~r 168 (343)
T d1g55a_ 160 LRYFLIAKL 168 (343)
T ss_dssp CEEEEEEEE
T ss_pred eeEEEEEEe
Confidence 44 455554
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.67 E-value=1.2 Score=41.70 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCCCC----CCCCCEEEEECCCCChhHHHHhhC----CcEEEecCcc
Q 010599 86 DKYIDQLASVIPIK----NGTVRTALDTGCGVASWGAYLWSR----NVIAMSFAPR 133 (506)
Q Consensus 86 ~~~~~~i~~~l~~~----~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vdis~~ 133 (506)
...++.|.+.+.+. .....+|||||.|.|.++..|.+. .++++++++.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~ 78 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS 78 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHH
Confidence 33445555554322 123558999999999999999764 4899999764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=81.41 E-value=1.9 Score=35.47 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=63.3
Q ss_pred EEeecCcc--cHHHHHHHhCCCeEEEEeecCCCcccHHHHHhcCccceeccccccCCCCCCceeEEEEccccccccCCCC
Q 010599 356 IMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 433 (506)
Q Consensus 356 vLD~gcG~--G~~~~~l~~~~~~~~~v~~~d~~~~~l~~~~~rg~~~~~~~~~~~~~~~p~s~D~v~~~~~~~~~~~~~~ 433 (506)
|.=+|+|. +.+|..|.+.+ .+|++.|.+++.++.+.+.|++....+-.+.+ ...|+|+. . . +-..
T Consensus 3 I~iIG~G~mG~~lA~~l~~~g---~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIil----a-v-p~~~ 69 (165)
T d2f1ka2 3 IGVVGLGLIGASLAGDLRRRG---HYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFL----C-T-PIQL 69 (165)
T ss_dssp EEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEE----C-S-CHHH
T ss_pred EEEEeecHHHHHHHHHHHHCC---CEEEEEECCchHHHHHHHhhccceeeeecccc----cccccccc----c-C-cHhh
Confidence 44467773 34677888877 47888999989999999998754332211211 56788875 1 1 1224
Q ss_pred HHHHHHHHhhcccCCcEEEEEeC--hhhHHHHHHHHh
Q 010599 434 IEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVG 468 (506)
Q Consensus 434 ~~~~l~e~~RvLrPgG~~ii~d~--~~~~~~~~~~~~ 468 (506)
++.++.|+...|+|+-.++-.-. ......+.++..
T Consensus 70 ~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~ 106 (165)
T d2f1ka2 70 ILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS 106 (165)
T ss_dssp HHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred hhhhhhhhhhhcccccceeeccccchHHHHHHHHhhc
Confidence 66899999988888886654332 224444555443
|