Query 010600
Match_columns 506
No_of_seqs 415 out of 2048
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 3.5E-34 7.5E-39 285.8 23.3 252 224-489 17-281 (281)
2 COG2730 BglC Endoglucanase [Ca 100.0 3.7E-28 8E-33 255.6 16.7 298 202-503 48-381 (407)
3 cd00257 Fascin Fascin-like dom 99.7 3.6E-17 7.8E-22 143.1 14.3 109 66-182 2-110 (119)
4 PF07745 Glyco_hydro_53: Glyco 99.6 5.9E-14 1.3E-18 142.6 20.2 226 228-483 25-294 (332)
5 PF06268 Fascin: Fascin domain 99.5 2E-13 4.3E-18 118.1 11.6 100 76-182 2-102 (111)
6 COG3867 Arabinogalactan endo-1 99.4 2.7E-11 5.8E-16 117.8 21.7 231 228-484 64-341 (403)
7 TIGR03356 BGL beta-galactosida 99.4 1.4E-11 3E-16 130.8 21.6 141 222-374 51-212 (427)
8 PF02449 Glyco_hydro_42: Beta- 99.4 5.9E-12 1.3E-16 131.7 15.8 247 223-488 6-338 (374)
9 PRK10150 beta-D-glucuronidase; 99.3 2.2E-10 4.8E-15 127.1 23.8 226 230-487 316-557 (604)
10 COG3934 Endo-beta-mannanase [C 99.1 1.6E-10 3.4E-15 119.0 9.8 242 222-487 21-280 (587)
11 cd00257 Fascin Fascin-like dom 99.1 3.2E-10 6.9E-15 99.1 9.1 77 65-148 43-119 (119)
12 PF02836 Glyco_hydro_2_C: Glyc 99.0 1.6E-08 3.5E-13 102.5 18.5 120 230-378 39-158 (298)
13 COG2723 BglB Beta-glucosidase/ 99.0 5E-08 1.1E-12 102.3 21.5 145 222-376 56-222 (460)
14 PF06268 Fascin: Fascin domain 99.0 3E-09 6.5E-14 91.9 9.7 77 65-148 35-111 (111)
15 smart00633 Glyco_10 Glycosyl h 98.9 3.3E-07 7.2E-12 90.9 21.9 195 266-493 14-233 (254)
16 PRK09852 cryptic 6-phospho-bet 98.8 1.3E-08 2.8E-13 109.2 9.6 114 222-345 68-182 (474)
17 PRK15014 6-phospho-beta-glucos 98.8 3.5E-08 7.7E-13 106.0 10.7 115 221-345 65-180 (477)
18 PF06229 FRG1: FRG1-like famil 98.7 3.3E-08 7.2E-13 93.0 8.0 83 64-152 37-119 (191)
19 PF01229 Glyco_hydro_39: Glyco 98.7 6.3E-07 1.4E-11 97.1 17.6 267 203-487 22-324 (486)
20 PF06229 FRG1: FRG1-like famil 98.7 1.1E-07 2.4E-12 89.5 10.2 99 70-180 4-104 (191)
21 TIGR01233 lacG 6-phospho-beta- 98.7 2.7E-07 5.8E-12 99.2 13.5 140 222-374 50-211 (467)
22 PF12876 Cellulase-like: Sugar 98.6 8.8E-08 1.9E-12 79.2 5.0 78 325-405 1-88 (88)
23 PRK13511 6-phospho-beta-galact 98.5 2.3E-07 5.1E-12 99.7 9.6 112 222-346 51-163 (469)
24 PRK09589 celA 6-phospho-beta-g 98.5 4.5E-07 9.7E-12 97.6 11.4 113 222-345 64-178 (476)
25 PF00232 Glyco_hydro_1: Glycos 98.5 3.2E-07 6.8E-12 98.6 10.1 142 222-375 55-218 (455)
26 PRK09593 arb 6-phospho-beta-gl 98.5 3.7E-07 8E-12 98.3 10.5 113 222-345 70-184 (478)
27 PRK10340 ebgA cryptic beta-D-g 98.5 4.4E-06 9.6E-11 97.7 19.4 187 230-488 358-548 (1021)
28 PLN02998 beta-glucosidase 98.5 3.4E-07 7.4E-12 98.8 9.2 114 222-346 79-193 (497)
29 PLN02849 beta-glucosidase 98.5 5.7E-07 1.2E-11 97.2 10.8 113 223-346 77-190 (503)
30 PLN02814 beta-glucosidase 98.5 3.9E-07 8.5E-12 98.5 9.3 114 222-346 74-188 (504)
31 PRK09525 lacZ beta-D-galactosi 98.5 5.8E-06 1.3E-10 96.7 18.8 112 230-378 374-489 (1027)
32 PF03198 Glyco_hydro_72: Gluca 98.4 1.5E-05 3.3E-10 79.8 17.9 122 230-377 56-180 (314)
33 PF01301 Glyco_hydro_35: Glyco 98.4 3.1E-06 6.7E-11 86.7 11.5 136 230-377 27-179 (319)
34 PF13204 DUF4038: Protein of u 98.3 1.9E-05 4.2E-10 79.8 14.6 136 230-378 33-186 (289)
35 PF14488 DUF4434: Domain of un 98.1 0.0001 2.2E-09 68.4 15.1 137 230-380 23-163 (166)
36 PF00331 Glyco_hydro_10: Glyco 98.0 0.00027 5.8E-09 72.5 16.3 233 232-493 26-292 (320)
37 COG3693 XynA Beta-1,4-xylanase 97.9 0.0022 4.8E-08 64.3 20.2 162 266-451 80-261 (345)
38 COG1874 LacA Beta-galactosidas 97.7 0.00032 7E-09 77.6 12.3 137 229-370 32-191 (673)
39 PLN03059 beta-galactosidase; P 97.6 0.00076 1.6E-08 76.1 13.9 147 219-378 56-222 (840)
40 PF02055 Glyco_hydro_30: O-Gly 97.5 0.0095 2.1E-07 64.6 20.1 229 237-486 110-380 (496)
41 PF14587 Glyco_hydr_30_2: O-Gl 97.5 0.011 2.4E-07 61.3 19.1 105 273-378 109-226 (384)
42 KOG0626 Beta-glucosidase, lact 97.4 0.00067 1.4E-08 72.4 9.5 109 230-346 94-204 (524)
43 PF04601 DUF569: Protein of un 97.3 0.0024 5.2E-08 57.2 10.7 106 63-173 5-118 (142)
44 PF11790 Glyco_hydro_cc: Glyco 97.1 0.015 3.2E-07 57.3 15.2 143 320-484 54-210 (239)
45 COG5309 Exo-beta-1,3-glucanase 96.9 0.1 2.2E-06 51.3 18.1 208 230-484 66-280 (305)
46 COG3250 LacZ Beta-galactosidas 96.9 0.015 3.3E-07 66.3 14.3 109 230-377 324-432 (808)
47 TIGR02103 pullul_strch alpha-1 96.9 0.25 5.5E-06 57.1 24.0 103 267-381 403-528 (898)
48 COG5520 O-Glycosyl hydrolase [ 96.7 0.14 3E-06 52.3 17.4 223 238-488 77-312 (433)
49 KOG3962 Predicted actin-bundli 96.5 0.011 2.4E-07 56.1 8.2 116 35-170 30-148 (246)
50 TIGR01515 branching_enzym alph 96.4 0.081 1.8E-06 59.2 15.8 144 230-377 160-348 (613)
51 TIGR02402 trehalose_TreZ malto 96.1 0.14 3E-06 56.5 15.6 134 231-377 115-280 (542)
52 PRK12313 glycogen branching en 96.1 0.22 4.7E-06 56.1 17.3 143 230-377 174-361 (633)
53 PF03662 Glyco_hydro_79n: Glyc 95.9 0.014 3.1E-07 59.4 6.0 170 266-453 107-298 (319)
54 smart00642 Aamy Alpha-amylase 95.9 0.03 6.5E-07 51.9 7.7 59 231-289 23-91 (166)
55 PLN02877 alpha-amylase/limit d 95.9 3.3 7.2E-05 48.4 25.4 110 267-381 465-599 (970)
56 PLN02447 1,4-alpha-glucan-bran 95.9 0.26 5.7E-06 55.9 16.3 146 230-378 254-446 (758)
57 TIGR02104 pulA_typeI pullulana 95.8 2.5 5.5E-05 47.3 23.6 136 231-377 168-348 (605)
58 KOG2233 Alpha-N-acetylglucosam 95.7 0.13 2.9E-06 54.2 12.2 144 230-378 81-282 (666)
59 PRK05402 glycogen branching en 95.6 0.44 9.5E-06 54.5 17.3 145 230-377 269-457 (726)
60 PLN02960 alpha-amylase 95.5 0.5 1.1E-05 54.2 16.7 147 229-378 419-611 (897)
61 PRK10785 maltodextrin glucosid 95.4 0.49 1.1E-05 52.9 16.4 58 231-288 183-246 (598)
62 TIGR02102 pullulan_Gpos pullul 94.9 0.81 1.8E-05 54.3 16.7 102 267-380 554-673 (1111)
63 TIGR02100 glgX_debranch glycog 94.8 0.48 1E-05 53.7 14.1 58 231-288 188-265 (688)
64 PF13200 DUF4015: Putative gly 94.6 3.8 8.1E-05 42.0 18.6 249 230-487 16-314 (316)
65 PF14200 RicinB_lectin_2: Rici 94.5 0.48 1E-05 39.9 10.4 62 65-126 14-79 (105)
66 PRK12568 glycogen branching en 94.5 1.6 3.5E-05 49.6 17.2 144 230-377 273-461 (730)
67 PF00128 Alpha-amylase: Alpha 94.5 0.078 1.7E-06 52.9 6.3 58 231-288 8-72 (316)
68 PRK14705 glycogen branching en 94.4 1.2 2.6E-05 53.4 16.5 144 230-377 769-957 (1224)
69 PF05089 NAGLU: Alpha-N-acetyl 94.3 0.17 3.7E-06 51.7 8.1 145 230-378 22-218 (333)
70 COG1523 PulA Type II secretory 94.2 0.14 3E-06 57.6 7.9 69 224-292 197-292 (697)
71 PF07468 Agglutinin: Agglutini 93.6 0.68 1.5E-05 41.9 9.8 101 69-170 8-123 (153)
72 PLN00196 alpha-amylase; Provis 93.2 0.29 6.4E-06 52.2 8.0 59 230-288 47-112 (428)
73 PF14871 GHL6: Hypothetical gl 92.9 1.3 2.9E-05 39.3 10.5 98 230-329 3-123 (132)
74 PF02638 DUF187: Glycosyl hydr 92.4 1.4 3.1E-05 45.0 11.6 146 230-377 22-228 (311)
75 PRK14706 glycogen branching en 92.4 4.5 9.7E-05 45.6 16.4 144 230-377 171-357 (639)
76 PLN02801 beta-amylase 92.0 0.39 8.4E-06 51.4 6.9 60 230-293 40-101 (517)
77 KOG2230 Predicted beta-mannosi 92.0 1 2.2E-05 48.7 9.9 149 230-408 360-524 (867)
78 PF01373 Glyco_hydro_14: Glyco 92.0 0.22 4.7E-06 52.1 4.9 60 230-293 19-80 (402)
79 KOG0496 Beta-galactosidase [Ca 91.4 1.5 3.3E-05 48.4 10.7 108 230-345 52-176 (649)
80 PLN02705 beta-amylase 91.3 0.48 1E-05 51.7 6.8 60 230-293 271-332 (681)
81 PLN00197 beta-amylase; Provisi 91.3 1.9 4.1E-05 46.7 11.2 60 230-293 130-191 (573)
82 PLN02361 alpha-amylase 91.1 0.63 1.4E-05 49.3 7.5 59 230-288 32-96 (401)
83 PF04601 DUF569: Protein of un 91.0 0.98 2.1E-05 40.6 7.4 64 108-173 6-69 (142)
84 TIGR02403 trehalose_treC alpha 91.0 0.65 1.4E-05 51.3 7.7 58 231-288 31-95 (543)
85 PRK10933 trehalose-6-phosphate 90.9 0.64 1.4E-05 51.4 7.6 58 231-288 37-101 (551)
86 PRK03705 glycogen debranching 90.9 0.53 1.1E-05 53.1 7.0 57 231-288 183-262 (658)
87 PRK09441 cytoplasmic alpha-amy 90.8 0.6 1.3E-05 50.7 7.2 58 231-288 26-101 (479)
88 smart00791 Agglutinin Amaranth 90.4 3.9 8.5E-05 36.2 10.4 97 67-170 7-111 (139)
89 PRK09505 malS alpha-amylase; R 90.4 0.79 1.7E-05 51.8 7.8 58 231-288 234-312 (683)
90 PLN02161 beta-amylase 90.3 5 0.00011 43.3 13.1 130 230-377 120-261 (531)
91 KOG3962 Predicted actin-bundli 90.3 0.35 7.6E-06 46.2 4.1 75 62-143 91-165 (246)
92 PF14200 RicinB_lectin_2: Rici 90.2 2.3 5E-05 35.7 8.9 71 101-173 4-80 (105)
93 PLN02803 beta-amylase 90.0 4.7 0.0001 43.6 12.7 130 230-377 110-251 (548)
94 TIGR02456 treS_nterm trehalose 90.0 0.84 1.8E-05 50.4 7.5 58 231-288 32-96 (539)
95 PLN02905 beta-amylase 88.8 1.1 2.3E-05 49.3 6.9 60 230-293 289-350 (702)
96 PF00167 FGF: Fibroblast growt 88.5 10 0.00022 33.0 11.9 96 68-171 3-101 (122)
97 PRK14510 putative bifunctional 87.9 1.1 2.3E-05 54.2 7.0 64 230-293 190-275 (1221)
98 COG3623 SgaU Putative L-xylulo 87.7 11 0.00023 36.8 12.1 118 263-408 91-215 (287)
99 PRK07379 coproporphyrinogen II 86.6 7.3 0.00016 41.3 11.7 123 227-373 112-248 (400)
100 COG0296 GlgB 1,4-alpha-glucan 86.5 1.6 3.4E-05 48.6 6.7 58 229-288 167-234 (628)
101 PRK05904 coproporphyrinogen II 86.3 9.4 0.0002 39.8 12.1 126 226-375 99-233 (353)
102 PF01120 Alpha_L_fucos: Alpha- 86.0 5.6 0.00012 41.3 10.3 135 229-375 93-242 (346)
103 PLN02784 alpha-amylase 85.7 2.3 5E-05 48.8 7.7 59 230-288 524-588 (894)
104 PRK08208 coproporphyrinogen II 85.4 7.2 0.00016 41.8 11.0 123 227-372 138-267 (430)
105 KOG2566 Beta-glucocerebrosidas 85.3 52 0.0011 34.5 17.6 230 238-488 135-407 (518)
106 TIGR02401 trehalose_TreY malto 85.2 2.6 5.7E-05 48.4 7.9 58 230-288 19-85 (825)
107 COG0366 AmyA Glycosidases [Car 84.9 2.1 4.5E-05 46.2 6.8 59 231-289 33-98 (505)
108 PRK06294 coproporphyrinogen II 84.8 12 0.00027 39.1 12.3 124 227-374 100-237 (370)
109 cd02742 GH20_hexosaminidase Be 84.2 35 0.00076 34.6 15.0 134 230-370 19-185 (303)
110 PRK05628 coproporphyrinogen II 84.2 15 0.00033 38.4 12.7 123 227-373 105-241 (375)
111 PRK13347 coproporphyrinogen II 84.2 8.3 0.00018 41.6 10.9 122 227-372 149-283 (453)
112 PRK14511 maltooligosyl trehalo 83.5 3.5 7.6E-05 47.7 7.9 60 230-289 23-90 (879)
113 PRK05799 coproporphyrinogen II 83.5 15 0.00032 38.4 12.2 123 227-373 96-232 (374)
114 PRK08599 coproporphyrinogen II 83.5 11 0.00024 39.4 11.3 123 227-373 97-233 (377)
115 PRK05660 HemN family oxidoredu 83.2 13 0.00028 39.1 11.7 124 226-373 103-236 (378)
116 KOG0470 1,4-alpha-glucan branc 81.8 2.1 4.5E-05 47.9 5.1 61 228-288 256-331 (757)
117 TIGR00539 hemN_rel putative ox 81.7 21 0.00046 37.1 12.5 122 227-372 97-228 (360)
118 PRK09249 coproporphyrinogen II 80.9 14 0.00031 39.8 11.2 122 227-372 148-282 (453)
119 COG0635 HemN Coproporphyrinoge 80.7 20 0.00043 38.3 12.0 122 227-372 134-268 (416)
120 PRK09058 coproporphyrinogen II 80.7 16 0.00035 39.3 11.4 123 227-373 160-297 (449)
121 PLN03244 alpha-amylase; Provis 80.4 25 0.00055 40.3 12.9 111 265-377 438-585 (872)
122 PRK09057 coproporphyrinogen II 80.3 16 0.00034 38.4 11.0 122 227-372 101-235 (380)
123 PRK08446 coproporphyrinogen II 78.6 24 0.00052 36.6 11.7 120 227-373 95-224 (350)
124 TIGR01212 radical SAM protein, 77.8 28 0.00061 35.3 11.7 126 226-374 119-257 (302)
125 PRK14507 putative bifunctional 76.9 6.8 0.00015 48.5 7.8 60 230-289 761-828 (1693)
126 cd06565 GH20_GcnA-like Glycosy 76.8 84 0.0018 31.9 14.8 140 230-375 20-183 (301)
127 PRK06582 coproporphyrinogen II 75.7 31 0.00067 36.5 11.6 124 227-373 108-243 (390)
128 TIGR00542 hxl6Piso_put hexulos 74.9 13 0.00029 36.9 8.3 58 230-289 97-154 (279)
129 COG3589 Uncharacterized conser 74.7 6.2 0.00014 40.3 5.7 52 230-289 19-70 (360)
130 cd06564 GH20_DspB_LnbB-like Gl 74.0 83 0.0018 32.2 14.1 137 230-370 20-194 (326)
131 TIGR02455 TreS_stutzeri trehal 74.0 9.8 0.00021 42.5 7.4 60 230-289 77-151 (688)
132 PRK08207 coproporphyrinogen II 73.7 34 0.00073 37.4 11.5 124 226-373 265-400 (488)
133 PF07468 Agglutinin: Agglutini 73.5 43 0.00092 30.5 10.1 118 31-149 15-152 (153)
134 cd06568 GH20_SpHex_like A subg 73.0 1.2E+02 0.0026 31.3 15.5 135 230-370 21-189 (329)
135 KOG0471 Alpha-amylase [Carbohy 70.9 7.2 0.00016 43.1 5.7 60 230-289 43-109 (545)
136 TIGR00538 hemN oxygen-independ 70.8 20 0.00043 38.6 9.0 121 227-371 148-281 (455)
137 PF00167 FGF: Fibroblast growt 69.0 35 0.00075 29.6 8.6 64 112-180 3-67 (122)
138 PRK13209 L-xylulose 5-phosphat 68.6 21 0.00045 35.5 8.0 58 230-289 102-159 (283)
139 cd06562 GH20_HexA_HexB-like Be 68.5 1E+02 0.0022 32.0 13.3 141 230-371 21-204 (348)
140 PRK08898 coproporphyrinogen II 68.4 53 0.0011 34.7 11.4 123 227-373 119-250 (394)
141 PRK09856 fructoselysine 3-epim 68.4 62 0.0013 31.8 11.4 122 264-407 86-211 (275)
142 PF14701 hDGE_amylase: glucano 67.9 37 0.0008 36.2 9.9 60 230-290 25-99 (423)
143 PRK04302 triosephosphate isome 67.6 1E+02 0.0022 29.7 12.3 108 230-381 75-183 (223)
144 PF01261 AP_endonuc_2: Xylose 66.9 7.4 0.00016 36.2 4.2 63 230-292 74-136 (213)
145 PF12891 Glyco_hydro_44: Glyco 66.8 15 0.00032 36.1 6.1 61 320-380 108-181 (239)
146 cd07938 DRE_TIM_HMGL 3-hydroxy 66.7 41 0.00088 33.7 9.6 64 228-291 74-137 (274)
147 PRK14565 triosephosphate isome 66.6 70 0.0015 31.4 10.9 132 230-391 75-209 (237)
148 smart00791 Agglutinin Amaranth 66.4 51 0.0011 29.4 8.8 80 64-147 50-136 (139)
149 COG1649 Uncharacterized protei 64.8 45 0.00098 35.5 9.8 146 230-378 67-272 (418)
150 PRK12858 tagatose 1,6-diphosph 64.2 78 0.0017 32.8 11.3 59 231-293 110-168 (340)
151 cd07948 DRE_TIM_HCS Saccharomy 62.6 9.2 0.0002 38.1 4.0 63 228-290 72-134 (262)
152 PF07488 Glyco_hydro_67M: Glyc 62.5 20 0.00043 36.4 6.2 159 230-409 60-240 (328)
153 PF05913 DUF871: Bacterial pro 61.4 14 0.0003 38.6 5.2 53 230-290 17-69 (357)
154 PF01261 AP_endonuc_2: Xylose 60.4 67 0.0015 29.6 9.5 128 231-377 31-164 (213)
155 TIGR01531 glyc_debranch glycog 59.3 29 0.00063 42.3 7.9 58 230-288 135-205 (1464)
156 cd07939 DRE_TIM_NifV Streptomy 58.7 23 0.0005 35.0 6.1 60 229-288 71-130 (259)
157 COG0276 HemH Protoheme ferro-l 58.4 1E+02 0.0023 31.6 10.8 141 222-381 98-268 (320)
158 cd02875 GH18_chitobiase Chitob 58.3 91 0.002 32.5 10.8 89 271-377 67-157 (358)
159 TIGR03234 OH-pyruv-isom hydrox 57.9 38 0.00083 33.0 7.6 60 230-291 87-146 (254)
160 PF04055 Radical_SAM: Radical 57.7 16 0.00035 32.0 4.5 63 228-293 88-153 (166)
161 PRK04161 tagatose 1,6-diphosph 57.0 17 0.00036 37.3 4.8 62 228-293 108-169 (329)
162 TIGR00433 bioB biotin syntheta 56.5 1.2E+02 0.0027 30.1 11.2 125 227-378 120-248 (296)
163 COG3664 XynB Beta-xylosidase [ 56.4 97 0.0021 32.8 10.2 200 266-487 38-256 (428)
164 TIGR01210 conserved hypothetic 56.0 16 0.00034 37.4 4.6 64 225-289 112-176 (313)
165 PRK13210 putative L-xylulose 5 55.4 23 0.00051 35.0 5.6 59 230-290 97-155 (284)
166 PLN02746 hydroxymethylglutaryl 55.4 29 0.00064 36.1 6.4 62 229-290 123-184 (347)
167 KOG4518 Hydroxypyruvate isomer 55.2 1.4E+02 0.003 28.6 10.0 127 233-376 22-177 (264)
168 PRK12399 tagatose 1,6-diphosph 54.9 18 0.0004 36.9 4.7 62 228-293 106-167 (324)
169 TIGR01211 ELP3 histone acetylt 53.7 15 0.00032 40.4 4.1 64 224-289 200-263 (522)
170 PRK05692 hydroxymethylglutaryl 53.2 16 0.00035 36.9 4.0 62 229-290 81-142 (287)
171 smart00812 Alpha_L_fucos Alpha 52.9 3E+02 0.0066 29.0 13.8 140 229-381 83-236 (384)
172 COG3534 AbfA Alpha-L-arabinofu 52.8 3E+02 0.0065 29.7 13.1 159 230-406 52-245 (501)
173 PRK09997 hydroxypyruvate isome 52.8 27 0.00058 34.3 5.5 59 230-290 88-146 (258)
174 cd00058 FGF Acidic and basic f 52.7 1.6E+02 0.0034 25.7 12.2 66 76-147 8-74 (123)
175 cd02871 GH18_chitinase_D-like 51.6 2E+02 0.0044 29.2 11.9 95 267-377 59-154 (312)
176 TIGR01232 lacD tagatose 1,6-di 51.3 21 0.00045 36.6 4.4 62 228-293 107-168 (325)
177 cd06563 GH20_chitobiase-like T 51.0 3.1E+02 0.0066 28.5 15.3 105 266-371 84-220 (357)
178 TIGR02090 LEU1_arch isopropylm 50.6 35 0.00076 35.7 6.2 62 228-289 72-133 (363)
179 cd03174 DRE_TIM_metallolyase D 49.7 19 0.00041 35.3 3.8 60 230-289 77-136 (265)
180 cd06570 GH20_chitobiase-like_1 49.7 2.2E+02 0.0048 29.1 11.7 57 230-289 21-89 (311)
181 cd07944 DRE_TIM_HOA_like 4-hyd 49.6 77 0.0017 31.5 8.2 50 228-291 83-132 (266)
182 cd07937 DRE_TIM_PC_TC_5S Pyruv 49.6 80 0.0017 31.6 8.4 48 228-289 92-139 (275)
183 cd06593 GH31_xylosidase_YicI Y 49.0 2.4E+02 0.0052 28.5 11.9 59 231-290 28-88 (308)
184 PTZ00333 triosephosphate isome 48.6 2.2E+02 0.0047 28.3 11.1 52 230-289 79-130 (255)
185 TIGR03471 HpnJ hopanoid biosyn 48.5 47 0.001 35.9 7.0 59 228-289 285-344 (472)
186 TIGR02660 nifV_homocitr homoci 48.0 41 0.0009 35.1 6.3 61 229-289 74-134 (365)
187 PF10566 Glyco_hydro_97: Glyco 47.4 56 0.0012 32.8 6.7 122 230-378 35-157 (273)
188 cd07945 DRE_TIM_CMS Leptospira 47.4 20 0.00043 36.1 3.6 62 229-290 76-137 (280)
189 PRK11858 aksA trans-homoaconit 46.7 49 0.0011 34.8 6.5 60 229-288 77-136 (378)
190 PRK06256 biotin synthase; Vali 46.5 97 0.0021 31.7 8.7 126 227-380 149-279 (336)
191 KOG1066 Glucosidase II catalyt 46.5 65 0.0014 36.4 7.5 121 222-346 364-513 (915)
192 PF07555 NAGidase: beta-N-acet 45.9 2.2E+02 0.0048 29.1 10.9 83 230-332 18-104 (306)
193 PF10566 Glyco_hydro_97: Glyco 45.8 43 0.00093 33.6 5.6 50 230-291 109-158 (273)
194 COG3280 TreY Maltooligosyl tre 45.6 31 0.00068 39.1 5.0 58 230-289 22-89 (889)
195 cd00311 TIM Triosephosphate is 45.5 3.1E+02 0.0067 27.0 12.7 131 231-391 75-219 (242)
196 cd06545 GH18_3CO4_chitinase Th 45.4 2.5E+02 0.0054 27.4 11.1 85 268-368 46-131 (253)
197 cd00842 MPP_ASMase acid sphing 45.0 1.1E+02 0.0023 30.7 8.6 78 217-294 137-226 (296)
198 cd00019 AP2Ec AP endonuclease 44.2 31 0.00068 34.2 4.5 114 230-365 88-204 (279)
199 PRK13210 putative L-xylulose 5 44.0 2.8E+02 0.0061 27.2 11.4 93 235-342 60-155 (284)
200 PRK09936 hypothetical protein; 43.4 1.7E+02 0.0036 29.7 9.3 138 230-380 41-182 (296)
201 TIGR00542 hxl6Piso_put hexulos 43.1 2.8E+02 0.006 27.4 11.2 148 235-407 60-212 (279)
202 cd02874 GH18_CFLE_spore_hydrol 43.1 1.1E+02 0.0023 31.0 8.3 89 271-369 48-137 (313)
203 cd06522 GH25_AtlA-like AtlA is 43.0 2.8E+02 0.0062 25.9 13.5 122 223-377 8-130 (192)
204 PRK07535 methyltetrahydrofolat 42.9 2.3E+02 0.0049 28.2 10.3 93 230-345 106-201 (261)
205 PRK09856 fructoselysine 3-epim 42.8 41 0.0009 33.1 5.1 59 230-290 93-151 (275)
206 TIGR01305 GMP_reduct_1 guanosi 42.3 80 0.0017 32.7 7.0 61 227-287 158-218 (343)
207 PRK14567 triosephosphate isome 42.2 3.6E+02 0.0077 26.8 11.4 51 231-289 76-126 (253)
208 PLN02449 ferrochelatase 41.6 1.8E+02 0.004 31.7 10.0 143 222-382 187-364 (485)
209 cd00058 FGF Acidic and basic f 41.6 2.1E+02 0.0046 24.9 8.8 70 64-140 38-112 (123)
210 COG5016 Pyruvate/oxaloacetate 41.1 44 0.00095 35.3 4.9 54 222-289 93-146 (472)
211 cd07941 DRE_TIM_LeuA3 Desulfob 40.6 35 0.00075 34.1 4.1 60 229-288 80-139 (273)
212 PRK13209 L-xylulose 5-phosphat 40.3 3.6E+02 0.0079 26.4 11.5 118 264-406 95-216 (283)
213 cd06589 GH31 The enzymes of gl 40.1 3.8E+02 0.0082 26.4 11.5 55 232-289 29-87 (265)
214 TIGR03234 OH-pyruv-isom hydrox 39.8 3.6E+02 0.0077 26.1 11.9 130 230-377 41-177 (254)
215 PF04343 DUF488: Protein of un 39.1 49 0.0011 28.6 4.4 27 270-296 2-28 (122)
216 cd07947 DRE_TIM_Re_CS Clostrid 39.0 34 0.00075 34.4 3.8 61 228-288 75-135 (279)
217 PF02879 PGM_PMM_II: Phosphogl 37.1 60 0.0013 26.9 4.5 83 266-377 3-91 (104)
218 COG3623 SgaU Putative L-xylulo 37.1 3.8E+02 0.0081 26.5 10.2 111 230-369 21-145 (287)
219 cd06542 GH18_EndoS-like Endo-b 37.0 4E+02 0.0086 25.9 11.1 99 266-377 49-151 (255)
220 PRK08195 4-hyroxy-2-oxovalerat 37.0 1.5E+02 0.0033 30.6 8.3 49 229-291 90-138 (337)
221 PF00232 Glyco_hydro_1: Glycos 36.7 17 0.00037 39.2 1.3 55 438-493 353-417 (455)
222 cd06547 GH85_ENGase Endo-beta- 36.2 1.5E+02 0.0033 30.7 8.2 96 273-376 51-146 (339)
223 KOG2499 Beta-N-acetylhexosamin 36.1 1.1E+02 0.0024 33.2 7.0 56 230-290 201-272 (542)
224 PRK09989 hypothetical protein; 36.1 4.1E+02 0.009 25.7 12.2 94 266-377 83-178 (258)
225 cd00419 Ferrochelatase_C Ferro 36.0 1.5E+02 0.0032 26.3 7.0 94 270-381 7-102 (135)
226 PF09270 BTD: Beta-trefoil DNA 35.6 62 0.0013 29.7 4.5 37 76-115 22-66 (158)
227 PLN02849 beta-glucosidase 35.0 39 0.00086 37.0 3.8 51 437-487 382-441 (503)
228 PRK00979 tetrahydromethanopter 34.8 2.9E+02 0.0062 28.3 9.6 86 230-345 136-231 (308)
229 PF05270 AbfB: Alpha-L-arabino 34.7 3.2E+02 0.0069 24.6 8.9 78 100-179 39-124 (142)
230 KOG4589 Cell division protein 34.7 71 0.0015 30.4 4.8 36 283-345 71-108 (232)
231 smart00518 AP2Ec AP endonuclea 34.4 3.6E+02 0.0079 26.3 10.4 63 263-341 79-141 (273)
232 PLN02429 triosephosphate isome 33.6 4.5E+02 0.0097 27.0 10.8 52 230-289 137-188 (315)
233 PF03659 Glyco_hydro_71: Glyco 33.4 2.4E+02 0.0051 29.8 9.2 49 230-289 20-68 (386)
234 TIGR02109 PQQ_syn_pqqE coenzym 33.2 1E+02 0.0023 31.8 6.5 60 227-289 92-153 (358)
235 cd07940 DRE_TIM_IPMS 2-isoprop 33.0 97 0.0021 30.7 6.0 60 229-288 71-134 (268)
236 TIGR02026 BchE magnesium-proto 32.9 1.3E+02 0.0028 32.9 7.4 58 229-289 286-344 (497)
237 COG1137 YhbG ABC-type (unclass 32.8 4.3E+02 0.0093 25.7 9.7 147 112-291 23-199 (243)
238 COG1099 Predicted metal-depend 32.8 1.3E+02 0.0029 29.3 6.4 119 229-379 13-135 (254)
239 PLN02814 beta-glucosidase 31.7 46 0.001 36.5 3.6 50 438-487 385-441 (504)
240 PRK13397 3-deoxy-7-phosphohept 31.4 1.7E+02 0.0036 29.0 7.1 57 231-291 33-89 (250)
241 PRK13511 6-phospho-beta-galact 31.3 74 0.0016 34.5 5.1 52 441-493 369-431 (469)
242 TIGR03217 4OH_2_O_val_ald 4-hy 31.0 1.2E+02 0.0026 31.4 6.3 49 229-291 89-137 (333)
243 PF00728 Glyco_hydro_20: Glyco 30.9 64 0.0014 33.0 4.5 60 230-289 21-94 (351)
244 PF00682 HMGL-like: HMGL-like 30.8 79 0.0017 30.5 4.8 61 229-289 65-129 (237)
245 TIGR01233 lacG 6-phospho-beta- 30.7 65 0.0014 34.9 4.6 47 441-487 368-424 (467)
246 TIGR02171 Fb_sc_TIGR02171 Fibr 30.6 1.6E+02 0.0035 34.4 7.7 26 264-289 804-829 (912)
247 PRK09389 (R)-citramalate synth 30.5 56 0.0012 35.7 4.0 62 229-290 75-136 (488)
248 PRK09997 hydroxypyruvate isome 28.9 5.4E+02 0.012 24.9 13.3 157 229-406 41-207 (258)
249 smart00442 FGF Acidic and basi 28.9 3.9E+02 0.0086 23.3 9.8 83 63-150 41-126 (126)
250 COG0641 AslB Arylsulfatase reg 28.7 7.1E+02 0.015 26.2 13.8 121 228-371 102-229 (378)
251 COG1441 MenC O-succinylbenzoat 28.5 58 0.0013 31.7 3.2 51 224-287 213-263 (321)
252 PF11395 DUF2873: Protein of u 28.2 70 0.0015 21.8 2.6 15 2-16 6-20 (43)
253 cd06601 GH31_lyase_GLase GLase 27.9 2.5E+02 0.0055 28.9 8.2 108 229-345 22-135 (332)
254 TIGR02631 xylA_Arthro xylose i 27.8 4.3E+02 0.0092 27.9 9.9 99 265-377 112-215 (382)
255 PF04273 DUF442: Putative phos 27.6 46 0.001 28.5 2.2 46 228-284 15-60 (110)
256 cd00161 RICIN Ricin-type beta- 27.5 3.3E+02 0.0072 22.0 9.6 73 75-150 9-84 (124)
257 TIGR02666 moaA molybdenum cofa 27.3 1.9E+02 0.004 29.6 7.1 60 230-292 102-164 (334)
258 COG3661 AguA Alpha-glucuronida 27.1 3.3E+02 0.0072 29.3 8.6 98 230-341 186-286 (684)
259 PLN02389 biotin synthase 27.0 4.8E+02 0.01 27.5 10.1 129 227-380 175-307 (379)
260 PLN02998 beta-glucosidase 26.9 65 0.0014 35.3 3.7 51 437-487 389-446 (497)
261 TIGR02867 spore_II_P stage II 26.7 2E+02 0.0043 27.4 6.5 55 230-291 37-92 (196)
262 COG1306 Uncharacterized conser 25.5 87 0.0019 31.8 3.9 59 230-289 80-145 (400)
263 cd07943 DRE_TIM_HOA 4-hydroxy- 25.5 1.8E+02 0.004 28.6 6.4 47 229-289 87-133 (263)
264 PRK00278 trpC indole-3-glycero 25.5 2E+02 0.0044 28.4 6.7 49 229-291 122-170 (260)
265 PRK05664 threonine-phosphate d 25.4 1.9E+02 0.0042 29.3 6.8 25 266-290 142-166 (330)
266 PRK05301 pyrroloquinoline quin 25.4 83 0.0018 32.8 4.2 59 227-288 101-161 (378)
267 cd06591 GH31_xylosidase_XylS X 25.4 6.5E+02 0.014 25.6 10.6 29 263-291 61-89 (319)
268 COG0134 TrpC Indole-3-glycerol 25.3 1.2E+02 0.0027 30.0 5.0 49 228-290 117-165 (254)
269 cd00019 AP2Ec AP endonuclease 25.1 4.6E+02 0.01 25.7 9.3 94 264-377 81-176 (279)
270 PRK13398 3-deoxy-7-phosphohept 24.7 2.3E+02 0.005 28.3 6.9 57 230-291 44-101 (266)
271 PF13378 MR_MLE_C: Enolase C-t 24.6 2E+02 0.0044 23.9 5.7 48 226-286 3-51 (111)
272 PF14870 PSII_BNR: Photosynthe 24.6 7.6E+02 0.016 25.1 11.3 136 38-179 71-213 (302)
273 PF10035 DUF2179: Uncharacteri 24.5 75 0.0016 23.2 2.6 21 358-378 29-49 (55)
274 COG2108 Uncharacterized conser 24.0 2.1E+02 0.0046 29.5 6.4 56 227-293 121-176 (353)
275 PRK14566 triosephosphate isome 23.9 7.3E+02 0.016 24.7 10.9 52 230-289 85-136 (260)
276 TIGR01370 cysRS possible cyste 23.9 7.6E+02 0.017 25.3 10.6 46 334-379 168-214 (315)
277 PRK09852 cryptic 6-phospho-bet 23.7 1.2E+02 0.0026 32.9 5.1 54 434-487 359-423 (474)
278 PRK00865 glutamate racemase; P 23.6 3.2E+02 0.0069 27.0 7.7 59 319-378 18-76 (261)
279 cd02068 radical_SAM_B12_BD B12 23.6 2.8E+02 0.0061 23.7 6.6 47 331-387 38-84 (127)
280 KOG3770 Acid sphingomyelinase 23.6 6.4E+02 0.014 28.1 10.4 105 218-335 284-403 (577)
281 smart00729 Elp3 Elongator prot 23.5 1.2E+02 0.0025 27.7 4.4 59 227-288 97-157 (216)
282 PF01041 DegT_DnrJ_EryC1: DegT 23.4 1.4E+02 0.0031 30.8 5.5 28 267-294 126-153 (363)
283 PRK15014 6-phospho-beta-glucos 23.4 1.4E+02 0.003 32.6 5.4 54 434-487 362-427 (477)
284 PRK14334 (dimethylallyl)adenos 23.3 7.9E+02 0.017 26.2 11.2 53 227-284 231-288 (440)
285 KOG0564 5,10-methylenetetrahyd 23.1 1.2E+02 0.0025 33.0 4.6 58 266-334 90-149 (590)
286 COG3684 LacD Tagatose-1,6-bisp 23.1 96 0.0021 30.9 3.7 57 232-293 116-172 (306)
287 TIGR02017 hutG_amidohyd N-form 23.1 3.1E+02 0.0067 27.3 7.5 27 267-293 124-151 (263)
288 PRK05096 guanosine 5'-monophos 23.0 2.7E+02 0.0057 29.0 7.0 61 227-287 159-219 (346)
289 TIGR03128 RuMP_HxlA 3-hexulose 23.0 2.2E+02 0.0049 26.6 6.3 44 232-290 68-111 (206)
290 PRK09240 thiH thiamine biosynt 23.0 4.8E+02 0.01 27.2 9.3 134 227-380 160-300 (371)
291 PF01183 Glyco_hydro_25: Glyco 22.9 5.8E+02 0.013 23.2 11.6 118 231-377 10-127 (181)
292 PF04283 CheF-arch: Chemotaxis 22.6 1.6E+02 0.0035 28.6 5.2 51 61-125 106-156 (221)
293 PF03992 ABM: Antibiotic biosy 22.5 2.7E+02 0.0059 20.8 5.7 33 314-346 14-47 (78)
294 TIGR03235 DNA_S_dndA cysteine 22.4 1.1E+02 0.0025 31.1 4.4 27 265-291 152-178 (353)
295 cd02877 GH18_hevamine_XipI_cla 22.3 8E+02 0.017 24.6 10.6 26 267-292 58-83 (280)
296 COG1501 Alpha-glucosidases, fa 22.3 9.9E+02 0.022 27.8 12.2 150 226-377 275-462 (772)
297 PRK10673 acyl-CoA esterase; Pr 22.2 2E+02 0.0044 27.2 5.9 57 321-381 31-91 (255)
298 PRK09593 arb 6-phospho-beta-gl 22.0 1.5E+02 0.0032 32.3 5.3 54 434-487 362-427 (478)
299 PF07454 SpoIIP: Stage II spor 21.9 2.4E+02 0.0052 28.3 6.4 55 230-291 114-169 (268)
300 TIGR02351 thiH thiazole biosyn 21.9 4.5E+02 0.0097 27.4 8.8 133 227-380 159-299 (366)
301 PRK09589 celA 6-phospho-beta-g 21.8 1.4E+02 0.0031 32.4 5.2 59 434-493 361-431 (476)
302 PF05013 FGase: N-formylglutam 21.5 2E+02 0.0043 27.7 5.6 75 266-347 115-194 (222)
303 PRK12331 oxaloacetate decarbox 21.5 1.7E+02 0.0037 31.6 5.6 47 228-288 97-143 (448)
304 COG2876 AroA 3-deoxy-D-arabino 21.4 7E+02 0.015 25.1 9.2 56 231-290 63-118 (286)
305 PF02679 ComA: (2R)-phospho-3- 21.2 1.9E+02 0.0041 28.6 5.3 50 228-289 85-134 (244)
306 TIGR03849 arch_ComA phosphosul 21.2 2.5E+02 0.0055 27.6 6.2 48 230-289 74-121 (237)
307 TIGR01125 MiaB-like tRNA modif 20.9 7.9E+02 0.017 26.1 10.6 59 227-288 229-292 (430)
308 cd01335 Radical_SAM Radical SA 20.8 2.3E+02 0.005 25.2 5.8 80 229-329 87-168 (204)
309 PF12273 RCR: Chitin synthesis 20.6 1.1E+02 0.0023 26.9 3.3 12 30-44 30-41 (130)
310 TIGR00109 hemH ferrochelatase. 20.6 8.9E+02 0.019 24.7 10.5 83 281-381 188-271 (322)
311 PRK05839 hypothetical protein; 20.6 2.5E+02 0.0053 29.1 6.5 24 266-289 173-196 (374)
312 COG2100 Predicted Fe-S oxidore 20.5 3E+02 0.0065 28.5 6.6 124 227-374 201-334 (414)
313 PF00853 Runt: Runt domain; I 20.5 63 0.0014 28.3 1.6 42 51-93 39-80 (135)
314 cd04502 SGNH_hydrolase_like_7 20.1 4.8E+02 0.01 23.2 7.7 58 317-377 37-95 (171)
315 PF00224 PK: Pyruvate kinase, 20.0 1.6E+02 0.0034 30.6 4.9 53 229-291 16-70 (348)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=100.00 E-value=3.5e-34 Score=285.84 Aligned_cols=252 Identities=29% Similarity=0.427 Sum_probs=178.7
Q ss_pred cccc-CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCC
Q 010600 224 WDSY-ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 302 (506)
Q Consensus 224 w~~~-ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg 302 (506)
|.+. +++++|+.|+++|+|+||||+.|..+..+.++..+.+..+++||++|++|+++||+||||+|..|+..++..
T Consensus 17 w~~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~--- 93 (281)
T PF00150_consen 17 WYNPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGD--- 93 (281)
T ss_dssp TSGGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTS---
T ss_pred cCCCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccc---
Confidence 5443 889999999999999999999986666555554567789999999999999999999999999865422111
Q ss_pred CCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCC-------hHHHHHHHHHHHHHHHhcCCCeEE
Q 010600 303 TRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVA-------LDTLKSYYKAGYDAVRKYTSTAYV 374 (506)
Q Consensus 303 ~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~V 374 (506)
.... +...+.+.++|+.||+|||+++.|++|||+|||...... .+.+.+++++++++||+++|+++|
T Consensus 94 -----~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i 168 (281)
T PF00150_consen 94 -----GYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLI 168 (281)
T ss_dssp -----TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred -----ccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCccee
Confidence 0111 345667788999999999999999999999999974332 378999999999999999999999
Q ss_pred EEeCC-CCCCChhh-hhccc-CCCCcEEEEEEeeccCCCCCCCC-chhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCC
Q 010600 375 IMSNR-LGPADHKE-LLSFA-SGLSRVVIDVHYYNLFSNNFNGL-NVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTC 450 (506)
Q Consensus 375 iv~~~-~~~~~~~~-~~~~~-~~~~nvv~s~H~Y~~f~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~ 450 (506)
++++. |. .+... ....+ ...++++|++|.|.++....... ........+...+....... ...+.|++|||||.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~pv~~gE~G~ 246 (281)
T PF00150_consen 169 IVGGGGWG-ADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWA-KKNGKPVVVGEFGW 246 (281)
T ss_dssp EEEEHHHH-TBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHH-HHTTSEEEEEEEES
T ss_pred ecCCCccc-cccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHH-HHcCCeEEEeCcCC
Confidence 99853 33 23322 22333 24789999999999754211111 11112223333333333333 34556799999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEecccCC
Q 010600 451 EWNVKDASKQDYQRFANAQLDVYGRATFGWAYWAHKCEA 489 (506)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~~~ 489 (506)
...... ...++....++.+++.++||+||+|+.++
T Consensus 247 ~~~~~~----~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 281 (281)
T PF00150_consen 247 SNNDGN----GSTDYADAWLDYLEQNGIGWIYWSWKPNS 281 (281)
T ss_dssp STTTSC----HHHHHHHHHHHHHHHTTCEEEECEESSSS
T ss_pred cCCCCC----cCHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 632111 33444445577888899999999999864
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=3.7e-28 Score=255.62 Aligned_cols=298 Identities=29% Similarity=0.457 Sum_probs=202.1
Q ss_pred ccchhhhcccCCCchhHHHHhhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCC-CCCCc--cchHHHHHHHHHHHH
Q 010600 202 RGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFV--GGSSKVLDNAFDWAE 278 (506)
Q Consensus 202 ~~e~~~~~~~G~~~a~~~~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~-~~~~~--~~~l~~ld~~v~~a~ 278 (506)
.++...+..+|...+....+.||.+++++++|..||++|||+||||++||.+ .+.. ..|+. ...+.+||++|++|+
T Consensus 48 ~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a~ 126 (407)
T COG2730 48 VGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWAK 126 (407)
T ss_pred ecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHHH
Confidence 3444555666777788889999999999999999999999999999999986 3322 23443 356779999999999
Q ss_pred HcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHH
Q 010600 279 KYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYY 358 (506)
Q Consensus 279 k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~ 358 (506)
++||+|+||+|.+|+++++.++++..+.... ...+.+++++.|++||.||++.+.|+|+|++|||+. -...+.|....
T Consensus 127 ~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~-~~~~~~w~~~~ 204 (407)
T COG2730 127 KLGIYVLIDLHGYPGGNNGHEHSGYTSDYKE-ENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG-IVTSETWNGGD 204 (407)
T ss_pred hcCeeEEEEecccCCCCCCcCcccccccccc-cchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc-cCCccccccch
Confidence 9999999999999999999998885544333 467889999999999999999999999999999995 12234455555
Q ss_pred HHHHHHHH-hcCCCe---EEEEeCC-CCC-----------CChh---hhhccc--CC---CCcEEEEEEeeccCCC---C
Q 010600 359 KAGYDAVR-KYTSTA---YVIMSNR-LGP-----------ADHK---ELLSFA--SG---LSRVVIDVHYYNLFSN---N 411 (506)
Q Consensus 359 ~~~~~aIR-~~~p~~---~Viv~~~-~~~-----------~~~~---~~~~~~--~~---~~nvv~s~H~Y~~f~~---~ 411 (506)
.++++.|| +....+ +|.+++. +.. .+.. +-...+ .. ....+++.|.|.+... .
T Consensus 205 ~~A~~~v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ 284 (407)
T COG2730 205 DEAYDVVRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLNGGS 284 (407)
T ss_pred HHHHHHHHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeecchhhcCCC
Confidence 67777775 444443 4444432 111 0000 000011 12 2445566666643110 0
Q ss_pred CCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCCCCC-C----CCCCHHHHHHHHHHHHHHHhcCCCcEEEEecc
Q 010600 412 FNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN-V----KDASKQDYQRFANAQLDVYGRATFGWAYWAHK 486 (506)
Q Consensus 412 ~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~~~~-~----~~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k 486 (506)
+............+..+...+......++.++++||||...+ . ....++..+.+++.+.+++.. ..+|.+|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ge~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~ 363 (407)
T COG2730 285 WTVGGEFDLAETDCAIWLNYVGHGARKNGYPTVIGEFGGNYNANNPNPQDERKDNVKVYLENQLDVFDT-TTYWINNPWS 363 (407)
T ss_pred CCccCCcccccccceeeecceeecccccceeeeeccccCccccCCCCccchhhHHHHHHhhhhhhhccc-eeEEEeeccc
Confidence 110000111111122122223323335677899999998774 1 245677889999999999997 8899999999
Q ss_pred cC-CCCCChHHHHHCCcc
Q 010600 487 CE-ANHWSLKWMIENGYI 503 (506)
Q Consensus 487 ~~-~~~Ws~~~~~~~G~i 503 (506)
.+ ...|+++.....+.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (407)
T COG2730 364 GGNDTGYDIEDDINLGLF 381 (407)
T ss_pred CCCCCccchhhcchhhcc
Confidence 98 478888776655443
No 3
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.74 E-value=3.6e-17 Score=143.14 Aligned_cols=109 Identities=27% Similarity=0.352 Sum_probs=97.0
Q ss_pred ceeeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEecCCeEEEeecCCCCceEEEeecCCCCCce
Q 010600 66 TQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSET 145 (506)
Q Consensus 66 ~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~Et 145 (506)
-||.|||. +|+|||++.+| ..|.|||+.+++||+|+|.+.++++++||++||+||+++.. +.|.|+++ ++++|.
T Consensus 2 p~v~Lrs~-~gkyl~~~~~g-~~v~a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~~---g~l~~~~~-~~~~e~ 75 (119)
T cd00257 2 PQVVLRSV-NGRYLSAEAGG-DKVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSADSD---GGVQLEGH-PNADCR 75 (119)
T ss_pred cEEEEEEc-CCCEEEEeccC-CEEEEcCccCCCceEEEEEECCCCeEEEEECCCcEEEEECC---CCEEecCC-CCCCcE
Confidence 48999998 99999999988 58999999999999999999999999999999999999863 36899998 999999
Q ss_pred EEEEEcCCCCcceEEeccCCceeEeccceeeecCCCC
Q 010600 146 FQIVRKDGDSSRVRLSASNGMFIQAISETRLTADYGS 182 (506)
Q Consensus 146 F~iv~~~~~~~~v~i~a~nG~~Lqa~~~~~v~ad~~~ 182 (506)
|++...+++ .+.|++.||+||.++.+..+.++...
T Consensus 76 F~~e~~~~g--~~al~~~~G~yl~~~~~g~l~~~~~~ 110 (119)
T cd00257 76 FTLEFHGDG--KWALRAENGRYLGGDGSGTLKASSET 110 (119)
T ss_pred EEEEECCCC--eEEEEcCCCCEEeecCCCeEEEecCC
Confidence 999987654 69999999999999866677777653
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.60 E-value=5.9e-14 Score=142.63 Aligned_cols=226 Identities=23% Similarity=0.342 Sum_probs=135.8
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC-----CCCCCCCCCCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA-----APGSQNGNEHSA 302 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~-----~pg~qng~~~sg 302 (506)
..++-|+.||+.|+|+|||-+ +.+|..++ -..++...++.+.|+++||+|+||+|- .||.|.
T Consensus 25 ~~~d~~~ilk~~G~N~vRlRv----wv~P~~~g---~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~------ 91 (332)
T PF07745_consen 25 QEKDLFQILKDHGVNAVRLRV----WVNPYDGG---YNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN------ 91 (332)
T ss_dssp SB--HHHHHHHTT--EEEEEE-----SS-TTTT---TTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B------
T ss_pred CCCCHHHHHHhcCCCeEEEEe----ccCCcccc---cCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC------
Confidence 347789999999999999977 33443311 136788888889999999999999994 355443
Q ss_pred CCCCCCCCC----hhhHHHHHHHHHHHHHHhcCCC-ceeEEEeecC-------CCCCCCChHHHHHHHHHHHHHHHhcCC
Q 010600 303 TRDGFQEWG----DSNVADTVAVIDFLAARYANRP-SLAAIELINE-------PLAPGVALDTLKSYYKAGYDAVRKYTS 370 (506)
Q Consensus 303 ~~~g~~~W~----~~~~~~~~~~w~~lA~ryk~~~-~V~g~eL~NE-------P~~~~~~~~~~~~~~~~~~~aIR~~~p 370 (506)
-+..|. +...+...++-+.+.+.+++.. ..-.+++-|| |.......+.+.++.++++++||+++|
T Consensus 92 ---~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p 168 (332)
T PF07745_consen 92 ---KPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP 168 (332)
T ss_dssp -----TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS
T ss_pred ---CCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC
Confidence 234565 2222333344444444444432 2334789999 433345677899999999999999999
Q ss_pred CeEEEEeCCCCCCCh---hhhhccc--CCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEE
Q 010600 371 TAYVIMSNRLGPADH---KELLSFA--SGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFV 445 (506)
Q Consensus 371 ~~~Viv~~~~~~~~~---~~~~~~~--~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~v 445 (506)
+..|+++-.-+ .+. ..|.+.. .+.+-.|+.+++|+-|.. .++.+... +..+.++.+++|+|
T Consensus 169 ~~kV~lH~~~~-~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~---------~l~~l~~~----l~~l~~ry~K~V~V 234 (332)
T PF07745_consen 169 NIKVMLHLANG-GDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG---------TLEDLKNN----LNDLASRYGKPVMV 234 (332)
T ss_dssp TSEEEEEES-T-TSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST----------HHHHHHH----HHHHHHHHT-EEEE
T ss_pred CCcEEEEECCC-CchHHHHHHHHHHHhcCCCcceEEEecCCCCcc---------hHHHHHHH----HHHHHHHhCCeeEE
Confidence 99999982211 122 2233221 356778999999975432 23333332 33344444677999
Q ss_pred EecCCCCCC------------------CCCCHHHHHHHHHHHHHHHhc----CCCcEEEE
Q 010600 446 GEWTCEWNV------------------KDASKQDYQRFANAQLDVYGR----ATFGWAYW 483 (506)
Q Consensus 446 GEfg~~~~~------------------~~~~~~~~~~~~~~q~~~~~~----~~~Gw~~W 483 (506)
.|.|-.+.. -..+.+..++|+++++++..+ .+.|-+||
T Consensus 235 ~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYW 294 (332)
T PF07745_consen 235 VETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYW 294 (332)
T ss_dssp EEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE
T ss_pred EeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEee
Confidence 999976541 013567888999888887654 78999999
No 5
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.50 E-value=2e-13 Score=118.14 Aligned_cols=100 Identities=33% Similarity=0.463 Sum_probs=87.8
Q ss_pred eeEEEEecCCCceEEecCCCCCCcceEEEEeeCC-ceEEEEecCCeEEEeecCCCCceEEEeecCCCCCceEEEEEcCCC
Q 010600 76 QKYIAAESGGGTIVVANRTSASGWETFRLWRVNE-TFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGD 154 (506)
Q Consensus 76 ~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~EtF~iv~~~~~ 154 (506)
++|+++|..|.. |.|||..++.||+|+|...++ ..++||++||+|++++. .+.|+|+++++++++.|+|+.++
T Consensus 2 ~~~~~~~k~~~~-l~an~~~~~~~e~f~le~~~~~~~v~lrs~~GkYls~~~---~G~v~~~~~~~~~~~~F~i~~~~-- 75 (111)
T PF06268_consen 2 NGYLVSEKFGAH-LNANRASLSDWETFQLEFDDGSYKVALRSHNGKYLSVDS---DGSVVADSETPGPDEFFEIEWHG-- 75 (111)
T ss_dssp TEEEEETTCTCB-EEEEESSSSCGGSEEEEEETTEEEEEEECTTSEEEEEET---TSEEEEEESSSSGGGCBEEEEET--
T ss_pred CcEEEEEEcCCE-EECChhcCcccEEEEEEEECCCCEEEEEcCCCCEEEEcC---CCeEEecCCCCCCCcEEEEEECC--
Confidence 578999988655 899999999999999997765 55799999999999986 45799999999999999999993
Q ss_pred CcceEEeccCCceeEeccceeeecCCCC
Q 010600 155 SSRVRLSASNGMFIQAISETRLTADYGS 182 (506)
Q Consensus 155 ~~~v~i~a~nG~~Lqa~~~~~v~ad~~~ 182 (506)
+.+.++++||+||.++.+..+.|+...
T Consensus 76 -~~~~~~~~nGkYl~~~~~g~l~a~~~~ 102 (111)
T PF06268_consen 76 -GKVALRASNGKYLSAGPNGQLKANATS 102 (111)
T ss_dssp -TEEEEECTTSCEEEEETTTEEEEEESS
T ss_pred -CEEEEECCCCCEEeeCCCCeEEEcCCC
Confidence 578899999999999888888887655
No 6
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.7e-11 Score=117.78 Aligned_cols=231 Identities=19% Similarity=0.319 Sum_probs=142.2
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCC--CCCCCccc--hHHHHHHHHHHHHHcCCEEEEecCCC-----CCCCCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPT--PPKPFVGG--SSKVLDNAFDWAEKYGVKVIVDLHAA-----PGSQNGN 298 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~--~~~~~~~~--~l~~ld~~v~~a~k~Gi~VILDlH~~-----pg~qng~ 298 (506)
..++-|+.||++|+|.|||.+ | .+|. .+.+|..+ .++..-++-+.|++.||+|++|+|-. |+.|
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv--w--ndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ--- 136 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV--W--NDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ--- 136 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE--e--cCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhc---
Confidence 346779999999999999976 3 3442 33445433 45556667788999999999999943 4433
Q ss_pred CCCCCCCCCCCCC----hhhHHHHHHHHHHHHHHhcCCC-ceeEEEeecCCCC-------CCCChHHHHHHHHHHHHHHH
Q 010600 299 EHSATRDGFQEWG----DSNVADTVAVIDFLAARYANRP-SLAAIELINEPLA-------PGVALDTLKSYYKAGYDAVR 366 (506)
Q Consensus 299 ~~sg~~~g~~~W~----~~~~~~~~~~w~~lA~ryk~~~-~V~g~eL~NEP~~-------~~~~~~~~~~~~~~~~~aIR 366 (506)
..+..|. +.......++=+...+.++++. ..-..++-||-.. .+...+.+..+..+++.+||
T Consensus 137 ------~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avr 210 (403)
T COG3867 137 ------KKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVR 210 (403)
T ss_pred ------CCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhh
Confidence 2345565 2333344455556666666654 2334678899553 23367889999999999999
Q ss_pred hcCCCeEEEEeC--CCCCCChhhhhcc--cCCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCc
Q 010600 367 KYTSTAYVIMSN--RLGPADHKELLSF--ASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPL 442 (506)
Q Consensus 367 ~~~p~~~Viv~~--~~~~~~~~~~~~~--~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~ 442 (506)
+++|+..|+++= +-...-+..+.+- ...-+..|+...||+.|+. .+..+... +..++.+..+.
T Consensus 211 ev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhg---------tl~nL~~n----l~dia~rY~K~ 277 (403)
T COG3867 211 EVSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHG---------TLNNLTTN----LNDIASRYHKD 277 (403)
T ss_pred hcCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccC---------cHHHHHhH----HHHHHHHhcCe
Confidence 999999999872 1111112222221 1356778999999976542 12222222 33344555667
Q ss_pred EEEEecCCCCCC---CC-------------------CCHHHHHHHHHHHHHHHhcCCCcEEEEe
Q 010600 443 TFVGEWTCEWNV---KD-------------------ASKQDYQRFANAQLDVYGRATFGWAYWA 484 (506)
Q Consensus 443 v~vGEfg~~~~~---~~-------------------~~~~~~~~~~~~q~~~~~~~~~Gw~~W~ 484 (506)
|+|-|-+-.+.. ++ ......++.++....+=..++.|-+||.
T Consensus 278 VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWE 341 (403)
T COG3867 278 VMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWE 341 (403)
T ss_pred EEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEec
Confidence 999998764321 00 1112233444444444444789999994
No 7
>TIGR03356 BGL beta-galactosidase.
Probab=99.42 E-value=1.4e-11 Score=130.76 Aligned_cols=141 Identities=22% Similarity=0.254 Sum_probs=102.4
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~s 301 (506)
+||+.+ ++|++.||++|+|++|++|.|..+ .|...+.+++..++.+|++|+.|+++||.+||+||+..-.+.
T Consensus 51 d~y~~y--~eDi~l~~~~G~~~~R~si~Wsri-~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~----- 122 (427)
T TIGR03356 51 DHYHRY--EEDVALMKELGVDAYRFSIAWPRI-FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQA----- 122 (427)
T ss_pred cHHHhH--HHHHHHHHHcCCCeEEcccchhhc-ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHH-----
Confidence 355444 799999999999999999998644 454334677889999999999999999999999997531110
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC------------C-CChH-------HHHHHHHH
Q 010600 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------------G-VALD-------TLKSYYKA 360 (506)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~------------~-~~~~-------~~~~~~~~ 360 (506)
......|. +..++.++++++.+++||++.... |.++|||... . .+.. .+.....+
T Consensus 123 --l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~--w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~ 198 (427)
T TIGR03356 123 --LEDRGGWLNRDTAEWFAEYAAVVAERLGDRVKH--WITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGL 198 (427)
T ss_pred --HHhcCCCCChHHHHHHHHHHHHHHHHhCCcCCE--EEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 00012354 678899999999999999995443 6899999731 0 0111 22344667
Q ss_pred HHHHHHhcCCCeEE
Q 010600 361 GYDAVRKYTSTAYV 374 (506)
Q Consensus 361 ~~~aIR~~~p~~~V 374 (506)
+++++|+..|+..|
T Consensus 199 A~~~~~~~~~~~~I 212 (427)
T TIGR03356 199 AVQALRANGPGAQV 212 (427)
T ss_pred HHHHHHHhCCCCeE
Confidence 78888988887444
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.39 E-value=5.9e-12 Score=131.73 Aligned_cols=247 Identities=19% Similarity=0.258 Sum_probs=131.9
Q ss_pred hccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec--CCCCCC---CCC
Q 010600 223 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL--HAAPGS---QNG 297 (506)
Q Consensus 223 hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl--H~~pg~---qng 297 (506)
||..-..++|++.|+++|+|+|||....|..++|.++ .| .++.||++|+.|+++||+|||.+ +..|.. ..+
T Consensus 6 ~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG-~y---dF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~P 81 (374)
T PF02449_consen 6 QWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEG-QY---DFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYP 81 (374)
T ss_dssp GS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTT-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSG
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCC-ee---ecHHHHHHHHHHHhccCeEEEEecccccccchhhhcc
Confidence 5555555999999999999999997655666777654 45 57889999999999999999977 333321 000
Q ss_pred ----CCCCCCC--CCCC-CC---ChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-C------------------
Q 010600 298 ----NEHSATR--DGFQ-EW---GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-G------------------ 348 (506)
Q Consensus 298 ----~~~sg~~--~g~~-~W---~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-~------------------ 348 (506)
.+..|.. .+.. .+ .+...+...++++.|++||+++|+|++|++-|||... .
T Consensus 82 e~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 82 EILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYG 161 (374)
T ss_dssp CCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHS
T ss_pred cccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhC
Confidence 0011111 1111 11 1567888889999999999999999999999998641 0
Q ss_pred -----------------------C----------C-----------hHHHHHHHHHHHHHHHhcCCCeEEEEe--CC-CC
Q 010600 349 -----------------------V----------A-----------LDTLKSYYKAGYDAVRKYTSTAYVIMS--NR-LG 381 (506)
Q Consensus 349 -----------------------~----------~-----------~~~~~~~~~~~~~aIR~~~p~~~Viv~--~~-~~ 381 (506)
+ . .+.+..+++...++||+++|+++|... +. ..
T Consensus 162 ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~ 241 (374)
T PF02449_consen 162 TIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFN 241 (374)
T ss_dssp SHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT---
T ss_pred CHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccC
Confidence 0 0 123456788889999999999988754 11 11
Q ss_pred CCChhhhhcccCCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCCC---CCCCC--
Q 010600 382 PADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCE---WNVKD-- 456 (506)
Q Consensus 382 ~~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~~---~~~~~-- 456 (506)
..+...+. ..-.+++.+.|..... ..............+.+ ..+ ..+.|.+|.|.... |...+
T Consensus 242 ~~d~~~~a-----~~~D~~~~d~Y~~~~~-~~~~~~~~~~a~~~dl~----R~~--~~~kpf~v~E~~~g~~~~~~~~~~ 309 (374)
T PF02449_consen 242 GIDYFKWA-----KYLDVVSWDSYPDGSF-DFYDDDPYSLAFNHDLM----RSL--AKGKPFWVMEQQPGPVNWRPYNRP 309 (374)
T ss_dssp SS-HHHHG-----GGSSSEEEEE-HHHHH-TTTT--TTHHHHHHHHH----HHH--TTT--EEEEEE--S--SSSSS---
T ss_pred cCCHHHHH-----hhCCcceeccccCccc-CCCCCCHHHHHHHHHHH----Hhh--cCCCceEeecCCCCCCCCccCCCC
Confidence 12222222 2235678888875000 00011111222222221 111 34666999999432 21111
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEEecccC
Q 010600 457 ASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 488 (506)
Q Consensus 457 ~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~~ 488 (506)
......+.+.- ..+....-|-.||.|+..
T Consensus 310 ~~pg~~~~~~~---~~~A~Ga~~i~~~~wr~~ 338 (374)
T PF02449_consen 310 PRPGELRLWSW---QAIAHGADGILFWQWRQS 338 (374)
T ss_dssp --TTHHHHHHH---HHHHTT-S-EEEC-SB--
T ss_pred CCCCHHHHHHH---HHHHHhCCeeEeeeccCC
Confidence 11123333322 223334557789999884
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.32 E-value=2.2e-10 Score=127.13 Aligned_cols=226 Identities=19% Similarity=0.161 Sum_probs=137.2
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC--CCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA--APGSQNGNEHSATRDGF 307 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~--~pg~qng~~~sg~~~g~ 307 (506)
+.||+.||++|+|+||+. +. |.+ +++.+.|.++||.|+-++-. ...... ..........
T Consensus 316 ~~d~~l~K~~G~N~vR~s-----h~-p~~------------~~~~~~cD~~GllV~~E~p~~~~~~~~~-~~~~~~~~~~ 376 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTS-----HY-PYS------------EEMLDLADRHGIVVIDETPAVGLNLSFG-AGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHCCCCEEEec-----cC-CCC------------HHHHHHHHhcCcEEEEeccccccccccc-cccccccccc
Confidence 568999999999999982 11 211 25678999999999987621 110000 0000000011
Q ss_pred CCCC-----hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCC
Q 010600 308 QEWG-----DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 382 (506)
Q Consensus 308 ~~W~-----~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~ 382 (506)
..|. +...+.+.+.++.+.+|+++||+|++|.+.|||.. ..+....+++++++.+|+.||+++|.......
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~---~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~- 452 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPAS---REQGAREYFAPLAELTRKLDPTRPVTCVNVMF- 452 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCc---cchhHHHHHHHHHHHHHhhCCCCceEEEeccc-
Confidence 1221 24556777889999999999999999999999863 23456788999999999999999998764211
Q ss_pred CChhhhhcccCCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCCCCC-------CC
Q 010600 383 ADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN-------VK 455 (506)
Q Consensus 383 ~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~~~~-------~~ 455 (506)
.... .......-.|+++|.|..|.... .........+ ...+..+.+....|++++|+|+... ..
T Consensus 453 ~~~~---~~~~~~~~Dv~~~N~Y~~wy~~~--~~~~~~~~~~----~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~ 523 (604)
T PRK10150 453 ATPD---TDTVSDLVDVLCLNRYYGWYVDS--GDLETAEKVL----EKELLAWQEKLHKPIIITEYGADTLAGLHSMYDD 523 (604)
T ss_pred CCcc---cccccCcccEEEEcccceecCCC--CCHHHHHHHH----HHHHHHHHHhcCCCEEEEccCCccccccccCCCC
Confidence 0100 00012335789998876542110 1111111111 1122222222256799999995321 11
Q ss_pred CCCHHHHHHHHHHHHHHHhc--CCCcEEEEeccc
Q 010600 456 DASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 487 (506)
Q Consensus 456 ~~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 487 (506)
..+.+....+++...+++++ .-+|-+.|++..
T Consensus 524 ~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D 557 (604)
T PRK10150 524 MWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNFAD 557 (604)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEEeeec
Confidence 23455666777777777764 677889999765
No 10
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.6e-10 Score=119.00 Aligned_cols=242 Identities=13% Similarity=0.131 Sum_probs=153.0
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCC-----CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQN 296 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~-----~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qn 296 (506)
.||++---++|++..+.+|++.+|+- +.|.++ +....+..+.+++.+++.|..++|+|+|.+-.-
T Consensus 21 ~~~~~~ei~~dle~a~~vg~k~lR~f-----iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg----- 90 (587)
T COG3934 21 PAIGNREIKADLEPAGFVGVKDLRLF-----ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVG----- 90 (587)
T ss_pred HHhhhhhhhcccccccCccceeEEEE-----EecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeec-----
Confidence 34544444678888999999999993 233222 112223459999999999999999999987532
Q ss_pred CCCCCCCCCCCCCCC-----------hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC-CCCChHHHHHHHHHHHHH
Q 010600 297 GNEHSATRDGFQEWG-----------DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA-PGVALDTLKSYYKAGYDA 364 (506)
Q Consensus 297 g~~~sg~~~g~~~W~-----------~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~-~~~~~~~~~~~~~~~~~a 364 (506)
+.|-|.+.-...|. +..+..+.++.+.|.+.||.+|+|.||.+-|||.. ...+.+.+..|..++++.
T Consensus 91 -~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~y 169 (587)
T COG3934 91 -LKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAY 169 (587)
T ss_pred -ccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHH
Confidence 22222111111221 34555668899999999999999999999999875 345678899999999999
Q ss_pred HHhcCCCeEEEEeCCCCCCChhhhhcccCCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCC-CcE
Q 010600 365 VRKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNG-PLT 443 (506)
Q Consensus 365 IR~~~p~~~Viv~~~~~~~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g-p~v 443 (506)
|+..||+|+|-+++.... +..+.++-....-..-+.|.|.-|+.+. -.++...+.... .+..+.-+ .||
T Consensus 170 iK~ldd~hlvsvGD~~sp--~~~~~pyN~r~~vDya~~hLY~hyd~sl---~~r~s~~yg~~~-----l~i~~~~g~~pV 239 (587)
T COG3934 170 IKWLDDGHLVSVGDPASP--WPQYAPYNARFYVDYAANHLYRHYDTSL---VSRVSTVYGKPY-----LDIPTIMGWQPV 239 (587)
T ss_pred hhccCCCCeeecCCcCCc--ccccCCcccceeeccccchhhhhccCCh---hheeeeeecchh-----hccchhccccee
Confidence 999999999988754321 1122221111122335678885443221 112211111111 11122234 679
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEeccc
Q 010600 444 FVGEWTCEWNVKDASKQDYQRFANAQLDVYGRATFGWAYWAHKC 487 (506)
Q Consensus 444 ~vGEfg~~~~~~~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~ 487 (506)
++.|||.......+....++-|... ++...+.|-.+||+..
T Consensus 240 ~leefGfsta~g~e~s~ayfiw~~l---al~~ggdGaLiwclsd 280 (587)
T COG3934 240 NLEEFGFSTAFGQENSPAYFIWIRL---ALDTGGDGALIWCLSD 280 (587)
T ss_pred eccccCCcccccccccchhhhhhhh---HHhhcCCceEEEEecC
Confidence 9999998655433333445555543 5666788999999987
No 11
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.11 E-value=3.2e-10 Score=99.10 Aligned_cols=77 Identities=25% Similarity=0.302 Sum_probs=68.8
Q ss_pred CceeeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEecCCeEEEeecCCCCceEEEeecCCCCCc
Q 010600 65 GTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSE 144 (506)
Q Consensus 65 g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~E 144 (506)
...|+||| .+|+||+++..| .|.|+++ ++.||+|++-..+++.++||+.||+||+++. ++.|.|++++++++|
T Consensus 43 ~g~v~Lrs-~~G~yls~~~~g--~l~~~~~-~~~~e~F~~e~~~~g~~al~~~~G~yl~~~~---~g~l~~~~~~~~~~e 115 (119)
T cd00257 43 TGKYALRS-HDGKYLSADSDG--GVQLEGH-PNADCRFTLEFHGDGKWALRAENGRYLGGDG---SGTLKASSETVGPDE 115 (119)
T ss_pred CCeEEEEE-CCCcEEEEECCC--CEEecCC-CCCCcEEEEEECCCCeEEEEcCCCCEEeecC---CCeEEEecCCCCccc
Confidence 56899998 699999999766 5899998 9999999988888899999999999999986 347999999999999
Q ss_pred eEEE
Q 010600 145 TFQI 148 (506)
Q Consensus 145 tF~i 148 (506)
.|.+
T Consensus 116 ~f~~ 119 (119)
T cd00257 116 LFEL 119 (119)
T ss_pred eecC
Confidence 9963
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.02 E-value=1.6e-08 Score=102.55 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=81.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
+.|+..||++|+|+||+- +. | + =.++++.|.++||.|+.++-..... .+...+.. ....
T Consensus 39 ~~d~~l~k~~G~N~iR~~-----h~-p--~----------~~~~~~~cD~~GilV~~e~~~~~~~--~~~~~~~~-~~~~ 97 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTH-----HY-P--P----------SPRFYDLCDELGILVWQEIPLEGHG--SWQDFGNC-NYDA 97 (298)
T ss_dssp HHHHHHHHHTT-SEEEET-----TS---------------SHHHHHHHHHHT-EEEEE-S-BSCT--SSSSTSCT-SCTT
T ss_pred HHHHHHHHhcCcceEEcc-----cc-c--C----------cHHHHHHHhhcCCEEEEeccccccC--ccccCCcc-ccCC
Confidence 689999999999999981 11 1 1 1356789999999999987431100 00111100 0000
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
-.+...+.+.+-++.+.+|++++|+|+.|.+.||+ ....+++++++.+|+.||+++|....
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 98 DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeecc
Confidence 01356677888999999999999999999999999 46778899999999999999998764
No 13
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=5e-08 Score=102.28 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=103.8
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~s 301 (506)
+||+.| ++|++.+|++|+|+.|+.|.|-..+........++..++..+++++.|.++||..+|+||+..-.+.=.
T Consensus 56 d~YhrY--keDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~--- 130 (460)
T COG2723 56 DFYHRY--KEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQ--- 130 (460)
T ss_pred chhhhh--HHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHh---
Confidence 355555 899999999999999999998655532222256778999999999999999999999999875322110
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCC-------------CChHH-------HHHHHHH
Q 010600 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-------------VALDT-------LKSYYKA 360 (506)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~-------------~~~~~-------~~~~~~~ 360 (506)
+.+..|. ...++.++++-+.+++||++.-.. |=.+|||.... ...+. ..-....
T Consensus 131 ---~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~--W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~ 205 (460)
T COG2723 131 ---KPYGGWENRETVDAFARYAATVFERFGDKVKY--WFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHAL 205 (460)
T ss_pred ---hccCCccCHHHHHHHHHHHHHHHHHhcCcceE--EEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHH
Confidence 1112465 688999999999999999986544 55889998521 11111 1123345
Q ss_pred HHHHHHhcCCC-eEEEE
Q 010600 361 GYDAVRKYTST-AYVIM 376 (506)
Q Consensus 361 ~~~aIR~~~p~-~~Viv 376 (506)
+++++|+..|+ .+=+|
T Consensus 206 avk~~~~~~~~~kIG~~ 222 (460)
T COG2723 206 AVKAIKKINPKGKVGII 222 (460)
T ss_pred HHHHHHhhCCcCceEEE
Confidence 67888999887 54444
No 14
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.98 E-value=3e-09 Score=91.95 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=68.7
Q ss_pred CceeeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEecCCeEEEeecCCCCceEEEeecCCCCCc
Q 010600 65 GTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSE 144 (506)
Q Consensus 65 g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~E 144 (506)
+..|+||| .+||||+++.-| .|+|+++.++.|++|+|... ++.+.||+.||+||++.. ++.|.|++++|+++|
T Consensus 35 ~~~v~lrs-~~GkYls~~~~G--~v~~~~~~~~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~---~g~l~a~~~~~~~~e 107 (111)
T PF06268_consen 35 SYKVALRS-HNGKYLSVDSDG--SVVADSETPGPDEFFEIEWH-GGKVALRASNGKYLSAGP---NGQLKANATSPGKDE 107 (111)
T ss_dssp EEEEEEEC-TTSEEEEEETTS--EEEEEESSSSGGGCBEEEEE-TTEEEEECTTSCEEEEET---TTEEEEEESSSSGGG
T ss_pred CCEEEEEc-CCCCEEEEcCCC--eEEecCCCCCCCcEEEEEEC-CCEEEEECCCCCEEeeCC---CCeEEEcCCCCCcce
Confidence 46778996 699999998876 69999999999999998887 888999999999999865 567999999999999
Q ss_pred eEEE
Q 010600 145 TFQI 148 (506)
Q Consensus 145 tF~i 148 (506)
.|++
T Consensus 108 lf~~ 111 (111)
T PF06268_consen 108 LFEY 111 (111)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9974
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.89 E-value=3.3e-07 Score=90.89 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-----hhhHHHHHHHHHHHHHHhcCCCceeEEEe
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANRPSLAAIEL 340 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~-----~~~~~~~~~~w~~lA~ryk~~~~V~g~eL 340 (506)
.++.+|+++++|+++||+| .-|..- +++ ..+.|. +...+.+.++++.+++||++. |..||+
T Consensus 14 n~~~~D~~~~~a~~~gi~v--~gH~l~------W~~----~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~--i~~wdV 79 (254)
T smart00633 14 NFSGADAIVNFAKENGIKV--RGHTLV------WHS----QTPDWVFNLSKETLLARLENHIKTVVGRYKGK--IYAWDV 79 (254)
T ss_pred ChHHHHHHHHHHHHCCCEE--EEEEEe------ecc----cCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCc--ceEEEE
Confidence 5899999999999999998 345331 111 012232 345677889999999999975 667999
Q ss_pred ecCCCCCCCC---hHHH-----HHHHHHHHHHHHhcCCCeEEEEeCCC-CCC--Chhhhh-------cccCCCCcEEEEE
Q 010600 341 INEPLAPGVA---LDTL-----KSYYKAGYDAVRKYTSTAYVIMSNRL-GPA--DHKELL-------SFASGLSRVVIDV 402 (506)
Q Consensus 341 ~NEP~~~~~~---~~~~-----~~~~~~~~~aIR~~~p~~~Viv~~~~-~~~--~~~~~~-------~~~~~~~nvv~s~ 402 (506)
.|||.....+ ...| .+|+..+++++|+++|+..+++.+.- .+. ....+. ....+.+.+-+..
T Consensus 80 ~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~ 159 (254)
T smart00633 80 VNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQS 159 (254)
T ss_pred eeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeee
Confidence 9999853211 0122 26889999999999999999987421 111 111111 1112356677777
Q ss_pred EeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCcE
Q 010600 403 HYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDYQRFANAQLDVYGR--ATFGW 480 (506)
Q Consensus 403 H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~~~~~~~~~~~~~~~~~~~q~~~~~~--~~~Gw 480 (506)
|.+... .+ +..+. +.+..+.+. +.||+|+|+...... +.+...++++..+.++-+ +..|.
T Consensus 160 H~~~~~------~~----~~~~~----~~l~~~~~~-g~pi~iTE~dv~~~~---~~~~qA~~~~~~l~~~~~~p~v~gi 221 (254)
T smart00633 160 HLSLGS------PN----IAEIR----AALDRFASL-GLEIQITELDISGYP---NPQAQAADYEEVFKACLAHPAVTGV 221 (254)
T ss_pred eecCCC------CC----HHHHH----HHHHHHHHc-CCceEEEEeecCCCC---cHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 876321 11 22232 223334444 667999999876532 225556667777666654 44799
Q ss_pred EEEecccCCCCCC
Q 010600 481 AYWAHKCEANHWS 493 (506)
Q Consensus 481 ~~W~~k~~~~~Ws 493 (506)
++|.+.. ..+|.
T Consensus 222 ~~Wg~~d-~~~W~ 233 (254)
T smart00633 222 TVWGVTD-KYSWL 233 (254)
T ss_pred EEeCCcc-CCccc
Confidence 9999875 34553
No 16
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=98.81 E-value=1.3e-08 Score=109.19 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=87.7
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~s 301 (506)
+||+.| ++|++.|+++|+|+.|++++|..++....+...++..++..+++|+.|+++||.+||+||+..-.+.-
T Consensus 68 D~Yhry--~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l---- 141 (474)
T PRK09852 68 DFYHRY--KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHL---- 141 (474)
T ss_pred chhhhh--HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHH----
Confidence 466666 89999999999999999999976553322233577899999999999999999999999976322100
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
.+....|. +...+.|.++++.++++|++.-.. |=.+|||.
T Consensus 142 --~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~--WiTfNEPn 182 (474)
T PRK09852 142 --VTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKY--WLTFNEIN 182 (474)
T ss_pred --HHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCe--EEeecchh
Confidence 00112455 688899999999999999997654 45789997
No 17
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=98.76 E-value=3.5e-08 Score=106.00 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=88.3
Q ss_pred HhhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCC
Q 010600 221 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (506)
Q Consensus 221 ~~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~ 300 (506)
-+||+.| ++|++.||++|+|+.|++++|-.++....++..++..++..+++|+.+.++||.+||+||+..-.+.=
T Consensus 65 ~D~Yhry--~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L--- 139 (477)
T PRK15014 65 VDFYGHY--KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHL--- 139 (477)
T ss_pred cCccccc--HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHH---
Confidence 3577766 89999999999999999999865543222233577899999999999999999999999876322100
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
.+.+..|. +...+.|.++.+.++++|++.-.. |=.+|||.
T Consensus 140 ---~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~--WiT~NEp~ 180 (477)
T PRK15014 140 ---VQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKY--WMTFNEIN 180 (477)
T ss_pred ---HHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCE--EEEecCcc
Confidence 00113455 688999999999999999997544 55889996
No 18
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.72 E-value=3.3e-08 Score=92.98 Aligned_cols=83 Identities=25% Similarity=0.377 Sum_probs=51.5
Q ss_pred cCceeeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEecCCeEEEeecCCCCceEEEeecCCCCC
Q 010600 64 DGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYS 143 (506)
Q Consensus 64 ~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~ 143 (506)
+-++|+||| .+||||+++.-| .|+|+++++|++|+|+++..+++.-.|...|++|++++.. +. |+|++.+.+..
T Consensus 37 ~~~~iafKs-~~GkYLs~Dk~G--~v~a~sdAiGp~E~f~~V~~~~~~a~~~~~~~~FLs~~~~--~~-i~a~s~~a~~~ 110 (191)
T PF06229_consen 37 GDEKIAFKS-GHGKYLSCDKDG--IVSARSDAIGPQEQFEPVFQDGKPALFSSSNNKFLSVDEE--GD-IRADSKTAGEN 110 (191)
T ss_dssp SSS-EEEEE-TTS-BEEE-SSS--BEEE--SS--TTTBEEEE-STT--EEEE-TTS-BEEE-SS--S--EEE--S---TT
T ss_pred CCCceEeec-cCccEEEEcCCC--cEEEEeecCCCceEEEEEECCCCeEEEecCCCeEEEEecc--cC-eeeccccCCCC
Confidence 457999999 699999999877 8999999999999999988665555555489999999974 33 99999999999
Q ss_pred ceEEEEEcC
Q 010600 144 ETFQIVRKD 152 (506)
Q Consensus 144 EtF~iv~~~ 152 (506)
|.++|--+.
T Consensus 111 e~~~iR~~~ 119 (191)
T PF06229_consen 111 EMIKIRSDA 119 (191)
T ss_dssp T--EEEE-S
T ss_pred ceEEEEEec
Confidence 988876554
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.68 E-value=6.3e-07 Score=97.10 Aligned_cols=267 Identities=16% Similarity=0.198 Sum_probs=134.2
Q ss_pred cchhhhcccCCCchhHHHHhhccccCCHHHHHHHH-hCCCCEEEeCcCcccccCCCCCCCCc----c----chHHHHHHH
Q 010600 203 GEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLS-SNGINAVRIPVGWWIANDPTPPKPFV----G----GSSKVLDNA 273 (506)
Q Consensus 203 ~e~~~~~~~G~~~a~~~~~~hw~~~ite~d~~~ia-~~G~N~VRIPv~~~~~~~~~~~~~~~----~----~~l~~ld~~ 273 (506)
+=|+.|- |...|...++..| +..+..++ +.||..||+. +++.+.- ..+. + =.+.+||++
T Consensus 22 ~~W~~~~--~~g~a~~~l~~~~-----q~~l~~~~~~~gf~yvR~h---~l~~ddm--~~~~~~~~~~~~~Ynf~~lD~i 89 (486)
T PF01229_consen 22 HFWRFCV--GSGRANLLLRADW-----QEQLRELQEELGFRYVRFH---GLFSDDM--MVYSESDEDGIPPYNFTYLDQI 89 (486)
T ss_dssp SGGGSEE--EES-GGGGGBHHH-----HHHHHHHHCCS--SEEEES----TTSTTT--T-EEEEETTEEEEE--HHHHHH
T ss_pred chhhhhc--CCCchHHHhhHHH-----HHHHHHHHhccCceEEEEE---eeccCch--hhccccccCCCCcCChHHHHHH
Confidence 3344453 3446777788777 57777776 7899999983 3332211 0110 0 158999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-----hhhHHHHHHHHHHHHHHhcCC----C-ceeEEEeecC
Q 010600 274 FDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANR----P-SLAAIELINE 343 (506)
Q Consensus 274 v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~-----~~~~~~~~~~w~~lA~ryk~~----~-~V~g~eL~NE 343 (506)
++...++||+..|.|--.|..-. ++.. ..-.|. +...+.+.++++.+++||.+. . .-.-||+.||
T Consensus 90 ~D~l~~~g~~P~vel~f~p~~~~----~~~~-~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNE 164 (486)
T PF01229_consen 90 LDFLLENGLKPFVELGFMPMALA----SGYQ-TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNE 164 (486)
T ss_dssp HHHHHHCT-EEEEEE-SB-GGGB----SS---EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-
T ss_pred HHHHHHcCCEEEEEEEechhhhc----CCCC-ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcC
Confidence 99999999999999976553210 0100 000111 456677777777776665432 1 2235999999
Q ss_pred CCCCC----CChHHHHHHHHHHHHHHHhcCCCeEEEEeC--CCCCCC-hhhhhccc--CCCCcEEEEEEeeccCCCCCCC
Q 010600 344 PLAPG----VALDTLKSYYKAGYDAVRKYTSTAYVIMSN--RLGPAD-HKELLSFA--SGLSRVVIDVHYYNLFSNNFNG 414 (506)
Q Consensus 344 P~~~~----~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~--~~~~~~-~~~~~~~~--~~~~nvv~s~H~Y~~f~~~~~~ 414 (506)
|.... ...+++-++|+.++++||+++|+..|- ++ .++... ...++.+. ...+-..+|+|.|..-......
T Consensus 165 Pd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vG-Gp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~ 243 (486)
T PF01229_consen 165 PDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVG-GPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN 243 (486)
T ss_dssp TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEE-EEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-S
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCccc-CccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc
Confidence 98642 234578899999999999999998653 22 122111 13333332 2345578999999731100011
Q ss_pred Cchhc---hHHHHHHhhhhhHHHHHhcCC--CcEEEEecCCCCCCCC--CCHHHHHHHHHH-HHHHHhcCCCcEEEEecc
Q 010600 415 LNVQQ---NIDYVNNQRASDLGAVTTSNG--PLTFVGEWTCEWNVKD--ASKQDYQRFANA-QLDVYGRATFGWAYWAHK 486 (506)
Q Consensus 415 ~~~~~---~i~~i~~~~~~~~~~~~~~~g--p~v~vGEfg~~~~~~~--~~~~~~~~~~~~-q~~~~~~~~~Gw~~W~~k 486 (506)
..... ..+.+..........+..... .++.+.||+....... .+......|+-. +++.+...--+..||++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~s 323 (486)
T PF01229_consen 244 ENMYERIEDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFS 323 (486)
T ss_dssp S-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SB
T ss_pred hhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchh
Confidence 11111 122222222221122333333 3699999987543211 111133444333 566665433468899996
Q ss_pred c
Q 010600 487 C 487 (506)
Q Consensus 487 ~ 487 (506)
.
T Consensus 324 D 324 (486)
T PF01229_consen 324 D 324 (486)
T ss_dssp S
T ss_pred h
Confidence 5
No 20
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.68 E-value=1.1e-07 Score=89.47 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=59.0
Q ss_pred EeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEee-CCceEEEEecCCeEEEeecCCCCceEEEeecCCCCCceEEE
Q 010600 70 FMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRV-NETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQI 148 (506)
Q Consensus 70 ~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~EtF~i 148 (506)
+.+..+|.|.+||.=. ......+.|-|...++ ++.+|+||+++|+|++|+. .+.|+|+++++|+.|+|++
T Consensus 4 i~a~d~G~~t~~ePhd------~~~~p~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk---~G~v~a~sdAiGp~E~f~~ 74 (191)
T PF06229_consen 4 IEALDNGLFTTGEPHD------VGEGPDPRQVWVATRVPGDEKIAFKSGHGKYLSCDK---DGIVSARSDAIGPQEQFEP 74 (191)
T ss_dssp EEE-TTS-EEE----S------SS----TTT-EEEEE--SSS-EEEEETTS-BEEE-S---SSBEEE--SS--TTTBEEE
T ss_pred eeeeccCCccccCCCc------CCCCCChhHeEEEEEecCCCceEeeccCccEEEEcC---CCcEEEEeecCCCceEEEE
Confidence 5677888999988642 1445568999999999 8999999999999999997 4579999999999999999
Q ss_pred EEcCCCCcceEEec-cCCceeEeccceeeecCC
Q 010600 149 VRKDGDSSRVRLSA-SNGMFIQAISETRLTADY 180 (506)
Q Consensus 149 v~~~~~~~~v~i~a-~nG~~Lqa~~~~~v~ad~ 180 (506)
|..++. +.+.. .|++||.++...-+.++-
T Consensus 75 V~~~~~---~a~~~~~~~~FLs~~~~~~i~a~s 104 (191)
T PF06229_consen 75 VFQDGK---PALFSSSNNKFLSVDEEGDIRADS 104 (191)
T ss_dssp E-STT-----EEEE-TTS-BEEE-SSS-EEE--
T ss_pred EECCCC---eEEEecCCCeEEEEecccCeeecc
Confidence 997654 44555 899999987533344443
No 21
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=98.65 E-value=2.7e-07 Score=99.15 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=101.4
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~s 301 (506)
+||+.| ++|++.||++|+|+.|+.++|-.+ .|...++.++..++..+++|+.+.++||..||+||+..-.+.-
T Consensus 50 d~yhry--~eDi~L~~~lG~~~yRfSIsWsRI-~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L---- 122 (467)
T TIGR01233 50 DFYHKY--PVDLELAEEYGVNGIRISIAWSRI-FPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEAL---- 122 (467)
T ss_pred chhhhH--HHHHHHHHHcCCCEEEEecchhhc-cCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHH----
Confidence 466555 899999999999999999998644 4443346778899999999999999999999999986422110
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC------------CC-C-h-H------HHHHHHH
Q 010600 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------------GV-A-L-D------TLKSYYK 359 (506)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~------------~~-~-~-~------~~~~~~~ 359 (506)
.....|. +..++.|.++-+.++++|++ |--|=.+|||... +. . . . .+.....
T Consensus 123 ---~~~GGW~n~~~v~~F~~YA~~~f~~fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa 196 (467)
T TIGR01233 123 ---HSNGDFLNRENIEHFIDYAAFCFEEFPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHA 196 (467)
T ss_pred ---HHcCCCCCHHHHHHHHHHHHHHHHHhCC---CCEEEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHH
Confidence 0112465 68899999999999999985 3337789999741 11 1 0 1 1222345
Q ss_pred HHHHHHHhcCCCeEE
Q 010600 360 AGYDAVRKYTSTAYV 374 (506)
Q Consensus 360 ~~~~aIR~~~p~~~V 374 (506)
++++++|+..++..|
T Consensus 197 ~A~~~~~~~~~~~~I 211 (467)
T TIGR01233 197 RAVKLYKDKGYKGEI 211 (467)
T ss_pred HHHHHHHHhCCCCeE
Confidence 667888887776433
No 22
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.55 E-value=8.8e-08 Score=79.25 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=49.3
Q ss_pred HHHHhcCCCceeEEEeecC-CCCC---------CCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCChhhhhcccCC
Q 010600 325 LAARYANRPSLAAIELINE-PLAP---------GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASG 394 (506)
Q Consensus 325 lA~ryk~~~~V~g~eL~NE-P~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~~~~~~~~~ 394 (506)
|.++|++++.|++|||.|| |... ....+...+|+++++++||+.+|+++|.++ .+. .....+... ..
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g-~~~-~~~~~~~~~-~~ 77 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG-FWG-GDWEDLEQL-QA 77 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE---B---S-TTHHHHS---
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee-ccc-CCHHHHHHh-ch
Confidence 4678999999999999999 7621 113467899999999999999999999765 232 222233333 22
Q ss_pred CCcEEEEEEee
Q 010600 395 LSRVVIDVHYY 405 (506)
Q Consensus 395 ~~nvv~s~H~Y 405 (506)
..-.++++|.|
T Consensus 78 ~~~DvisfH~Y 88 (88)
T PF12876_consen 78 ENLDVISFHPY 88 (88)
T ss_dssp TT-SSEEB-EE
T ss_pred hcCCEEeeecC
Confidence 45689999998
No 23
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=98.55 E-value=2.3e-07 Score=99.74 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=87.9
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~s 301 (506)
+||+.| ++|++.||++|+|+.|+.++|--++ |...+..++..++..+++|+.|.++||..||+||+..-.+.=
T Consensus 51 d~Y~ry--~eDi~L~~~lG~~~yRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L---- 123 (469)
T PRK13511 51 DFYHRY--PEDLKLAEEFGVNGIRISIAWSRIF-PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEAL---- 123 (469)
T ss_pred chhhhh--HHHHHHHHHhCCCEEEeeccHhhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHH----
Confidence 466666 8999999999999999999986444 443345778899999999999999999999999986422110
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC
Q 010600 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (506)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~ 346 (506)
.....|. ++..+.|.++-+.++++|++ -.. |=.+|||..
T Consensus 124 ---~~~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~--W~T~NEP~~ 163 (469)
T PRK13511 124 ---HSNGDWLNRENIDHFVRYAEFCFEEFPE-VKY--WTTFNEIGP 163 (469)
T ss_pred ---HHcCCCCCHHHHHHHHHHHHHHHHHhCC-CCE--EEEccchhh
Confidence 0112455 68889999999999999999 433 668999973
No 24
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=98.54 E-value=4.5e-07 Score=97.60 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=86.9
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~-~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~ 300 (506)
+||+.| ++|++.||++|+|+.|+.|+|-.++ |.. ++..++..++..+++|+.|.++||..||+||+..-.+.=.
T Consensus 64 D~Yhry--~eDi~Lm~~lG~~~yRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~-- 138 (476)
T PRK09589 64 DFYHRY--KEDIALFAEMGFKCFRTSIAWTRIF-PQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLV-- 138 (476)
T ss_pred cHHHhh--HHHHHHHHHcCCCEEEeccchhhcC-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHH--
Confidence 466666 8999999999999999999986544 432 2335778999999999999999999999999864221000
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
+.+..|. +...+.|.++-+.++++|++.-.. |=.+|||.
T Consensus 139 ----~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~--WiT~NEp~ 178 (476)
T PRK09589 139 ----TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKY--WMTFNEIN 178 (476)
T ss_pred ----HhcCCcCChHHHHHHHHHHHHHHHHhcCCCCE--EEEecchh
Confidence 0112455 678899999999999999996544 45789986
No 25
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=98.53 E-value=3.2e-07 Score=98.59 Aligned_cols=142 Identities=20% Similarity=0.274 Sum_probs=99.5
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~-~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~ 300 (506)
+||+.| ++|++.||++|+|+.|+.++|-. ..|.+ .+..++..++..+++|+.++++||..||+||+..-.+-
T Consensus 55 d~y~~y--~eDi~l~~~lg~~~yRfsi~W~R-i~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~---- 127 (455)
T PF00232_consen 55 DHYHRY--KEDIALMKELGVNAYRFSISWSR-IFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLW---- 127 (455)
T ss_dssp GHHHHH--HHHHHHHHHHT-SEEEEE--HHH-HSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHH----
T ss_pred cchhhh--hHHHHHHHhhccceeeeecchhh-eeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccc----
Confidence 455555 89999999999999999999854 44554 45678889999999999999999999999997521100
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC------------CC-CCh-------HHHHHHHH
Q 010600 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA------------PG-VAL-------DTLKSYYK 359 (506)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~------------~~-~~~-------~~~~~~~~ 359 (506)
......|. +...+.+.++.+.++++|++.-.. |=.+|||.. ++ .+. ..+.....
T Consensus 128 ---l~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~--w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa 202 (455)
T PF00232_consen 128 ---LEDYGGWLNRETVDWFARYAEFVFERFGDRVKY--WITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHA 202 (455)
T ss_dssp ---HHHHTGGGSTHHHHHHHHHHHHHHHHHTTTBSE--EEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHH
T ss_pred ---eeecccccCHHHHHHHHHHHHHHHHHhCCCcce--EEeccccceeeccccccccccccccccchhhHHHhhHHHHHH
Confidence 00012344 688999999999999999996544 568999974 11 111 12344567
Q ss_pred HHHHHHHhcCCCeEEE
Q 010600 360 AGYDAVRKYTSTAYVI 375 (506)
Q Consensus 360 ~~~~aIR~~~p~~~Vi 375 (506)
++++++|+..++..|-
T Consensus 203 ~A~~~~~~~~~~~~IG 218 (455)
T PF00232_consen 203 KAVKAIKEKYPDGKIG 218 (455)
T ss_dssp HHHHHHHHHTCTSEEE
T ss_pred HHHHHHhhcccceEEe
Confidence 7889999988876553
No 26
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=98.53 E-value=3.7e-07 Score=98.30 Aligned_cols=113 Identities=18% Similarity=0.266 Sum_probs=87.3
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~-~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~ 300 (506)
+||+.| ++|++.||++|+|+.|+.|+|-.++ |.. ++..++..++..+++|+.+.++||..+|+||+..-.|.=.
T Consensus 70 d~Yhry--~eDi~Lm~~lG~~aYRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~-- 144 (478)
T PRK09593 70 DMYHHY--KEDIALFAEMGFKTYRMSIAWTRIF-PKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLI-- 144 (478)
T ss_pred chHHhh--HHHHHHHHHcCCCEEEEecchhhcc-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHH--
Confidence 466655 8999999999999999999986444 432 2345788999999999999999999999999863221100
Q ss_pred CCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 301 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 301 sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
+.+..|. +...+.|.++-+.++++|++.-.. |=.+|||.
T Consensus 145 ----~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~--WiT~NEP~ 184 (478)
T PRK09593 145 ----EEYGGWRNRKMVGFYERLCRTLFTRYKGLVKY--WLTFNEIN 184 (478)
T ss_pred ----hhcCCCCChHHHHHHHHHHHHHHHHhcCcCCE--EEeecchh
Confidence 0123465 678899999999999999997644 45889997
No 27
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.51 E-value=4.4e-06 Score=97.74 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=112.0
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec----CCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGSQNGNEHSATRD 305 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl----H~~pg~qng~~~sg~~~ 305 (506)
+.|++.||++|+|+||+. +. | +. .++.+.|.++||+|+-+. |..+ ..+..
T Consensus 358 ~~dl~lmK~~g~NavR~s-----Hy-P--~~----------~~fydlcDe~GllV~dE~~~e~~g~~-------~~~~~- 411 (1021)
T PRK10340 358 EKDIQLMKQHNINSVRTA-----HY-P--ND----------PRFYELCDIYGLFVMAETDVESHGFA-------NVGDI- 411 (1021)
T ss_pred HHHHHHHHHCCCCEEEec-----CC-C--CC----------HHHHHHHHHCCCEEEECCcccccCcc-------ccccc-
Confidence 578999999999999983 11 2 11 245789999999999875 3321 11100
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCCh
Q 010600 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADH 385 (506)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~ 385 (506)
....-.+...+.+++-.+.+.+|+++||+|+.|.+.||+... . ..+++++.+|+.||+++|..++...
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g----~----~~~~~~~~~k~~DptR~v~~~~~~~---- 479 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG----C----NIRAMYHAAKALDDTRLVHYEEDRD---- 479 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc----H----HHHHHHHHHHHhCCCceEEeCCCcC----
Confidence 000000233456667788899999999999999999998531 1 2368899999999999987653110
Q ss_pred hhhhcccCCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCCCCCCCCCCHHHHHHH
Q 010600 386 KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDYQRF 465 (506)
Q Consensus 386 ~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~~~~~~~~~~~~~~~~ 465 (506)
...-.|++. +|... ..+... .......|+++.|++-++...... ..+|
T Consensus 480 --------~~~~Dv~~~-~Y~~~-------------~~~~~~-------~~~~~~kP~i~~Ey~hamgn~~g~---~~~y 527 (1021)
T PRK10340 480 --------AEVVDVIST-MYTRV-------------ELMNEF-------GEYPHPKPRILCEYAHAMGNGPGG---LTEY 527 (1021)
T ss_pred --------ccccceecc-ccCCH-------------HHHHHH-------HhCCCCCcEEEEchHhccCCCCCC---HHHH
Confidence 111234443 23211 111110 011224679999998665422222 3334
Q ss_pred HHHHHHHHhcCCCcEEEEecccC
Q 010600 466 ANAQLDVYGRATFGWAYWAHKCE 488 (506)
Q Consensus 466 ~~~q~~~~~~~~~Gw~~W~~k~~ 488 (506)
.+. ++.+. .-+|-+.|.|...
T Consensus 528 w~~-~~~~p-~l~GgfiW~~~D~ 548 (1021)
T PRK10340 528 QNV-FYKHD-CIQGHYVWEWCDH 548 (1021)
T ss_pred HHH-HHhCC-ceeEEeeeecCcc
Confidence 322 22222 5678899998774
No 28
>PLN02998 beta-glucosidase
Probab=98.50 E-value=3.4e-07 Score=98.81 Aligned_cols=114 Identities=25% Similarity=0.335 Sum_probs=88.6
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~s 301 (506)
+||+.| ++|++.||++|+|+-|+.|+|-.++ |+..++.++..++..+++|+.+.++||..||+||+..-.+.=.
T Consensus 79 D~Yhry--~EDi~lmk~lG~~~YRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~--- 152 (497)
T PLN02998 79 DQYHKY--KEDVKLMADMGLEAYRFSISWSRLL-PSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALE--- 152 (497)
T ss_pred cHHHhh--HHHHHHHHHcCCCeEEeeccHHhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH---
Confidence 466666 8999999999999999999986444 4433457888999999999999999999999999863221000
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC
Q 010600 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (506)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~ 346 (506)
+.+..|. ++..+.|.++-+.+.++|++.-.. |=.+|||..
T Consensus 153 ---~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~--WiT~NEP~~ 193 (497)
T PLN02998 153 ---DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSH--WTTINEVNV 193 (497)
T ss_pred ---HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCE--EEEccCcch
Confidence 0112455 678899999999999999996544 458899984
No 29
>PLN02849 beta-glucosidase
Probab=98.49 E-value=5.7e-07 Score=97.21 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=87.8
Q ss_pred hccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCC
Q 010600 223 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 302 (506)
Q Consensus 223 hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg 302 (506)
||..| ++|++.||++|+|+-|+.++|-.+ .|+..++.++..++..+++|+.+.++||..||+||+..-.+-- .
T Consensus 77 ~YhrY--~eDI~Lm~~lG~~aYRfSIsWsRI-~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L-~--- 149 (503)
T PLN02849 77 GYHKY--KEDVKLMVETGLDAFRFSISWSRL-IPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYL-E--- 149 (503)
T ss_pred HHHhH--HHHHHHHHHcCCCeEEEeccHHhc-CcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHH-H---
Confidence 55555 899999999999999999998544 4544346788899999999999999999999999986322100 0
Q ss_pred CCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC
Q 010600 303 TRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (506)
Q Consensus 303 ~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~ 346 (506)
+.+..|. ++..+.|.++-+.++++|++.-.. |=.+|||..
T Consensus 150 --~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~--WiT~NEP~~ 190 (503)
T PLN02849 150 --DDYGGWINRRIIKDFTAYADVCFREFGNHVKF--WTTINEANI 190 (503)
T ss_pred --HhcCCcCCchHHHHHHHHHHHHHHHhcCcCCE--EEEecchhh
Confidence 0113455 678899999999999999997654 457899973
No 30
>PLN02814 beta-glucosidase
Probab=98.49 E-value=3.9e-07 Score=98.48 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=88.3
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~s 301 (506)
+||+.| ++|++.||++|+|+-|+.++|--++ |+..+..++..++..+++|+.|.++||..||+||+..-.+.-
T Consensus 74 D~Yhry--~EDI~L~k~lG~~ayRfSIsWsRI~-P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L---- 146 (504)
T PLN02814 74 DGYHKY--KEDVKLMAEMGLESFRFSISWSRLI-PNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSL---- 146 (504)
T ss_pred cHHHhh--HHHHHHHHHcCCCEEEEeccHhhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHH----
Confidence 355555 8999999999999999999986544 443345788899999999999999999999999986321100
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC
Q 010600 302 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (506)
Q Consensus 302 g~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~ 346 (506)
.+.+..|. ++..+.|.++-+.++++|++.-.. |=.+|||..
T Consensus 147 --~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~--WiT~NEP~~ 188 (504)
T PLN02814 147 --EDEYGGWINRKIIEDFTAFADVCFREFGEDVKL--WTTINEATI 188 (504)
T ss_pred --HHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCE--EEeccccch
Confidence 00123455 688899999999999999996544 457899973
No 31
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.46 E-value=5.8e-06 Score=96.66 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec----CCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGSQNGNEHSATRD 305 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl----H~~pg~qng~~~sg~~~ 305 (506)
+.|++.||++|+|+||+. +. | +. .++.+.|.++||+|+-+. |.... .+...
T Consensus 374 ~~di~lmK~~g~NaVR~s-----Hy-P--~~----------p~fydlcDe~GilV~dE~~~e~hg~~~-------~~~~~ 428 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCS-----HY-P--NH----------PLWYELCDRYGLYVVDEANIETHGMVP-------MNRLS 428 (1027)
T ss_pred HHHHHHHHHCCCCEEEec-----CC-C--CC----------HHHHHHHHHcCCEEEEecCccccCCcc-------ccCCC
Confidence 568999999999999982 11 1 11 245789999999999885 32110 00000
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
.. +...+.+.+-++.+..|.++||+|+.|.+.||+... ....++++.+|+.||+++|..++
T Consensus 429 ~d----p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g--------~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 429 DD----PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHG--------ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred CC----HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCcC--------hhHHHHHHHHHhhCCCCcEEECC
Confidence 01 234556677788999999999999999999998631 12467889999999999998764
No 32
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.42 E-value=1.5e-05 Score=79.76 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=71.5
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
+.|+..|+++|+|+||+ | ..+|... =|..++.+.+.||||||||-....+.+.. +....
T Consensus 56 ~rDi~~l~~LgiNtIRV---Y--~vdp~~n----------Hd~CM~~~~~aGIYvi~Dl~~p~~sI~r~------~P~~s 114 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRV---Y--SVDPSKN----------HDECMSAFADAGIYVILDLNTPNGSINRS------DPAPS 114 (314)
T ss_dssp HHHHHHHHHHT-SEEEE---S-----TTS------------HHHHHHHHHTT-EEEEES-BTTBS--TT------S----
T ss_pred HHhHHHHHHcCCCEEEE---E--EeCCCCC----------HHHHHHHHHhCCCEEEEecCCCCccccCC------CCcCC
Confidence 78999999999999999 2 3344321 46778888899999999998775443321 11123
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCC---CChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG---VALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~---~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
|.. ...+-...+...|+.+++++||=.-||-.... ....-++...+++-+.|++.+. +.|-|+
T Consensus 115 w~~----~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVG 180 (314)
T PF03198_consen 115 WNT----DLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVG 180 (314)
T ss_dssp --H----HHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EE
T ss_pred CCH----HHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCcee
Confidence 432 33444555566678999999999999976432 1234566666777777777654 344444
No 33
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.35 E-value=3.1e-06 Score=86.67 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
++.++.||++|+|+|-++|.|- ..+|.+ +.|+-+....|+++++.|+++||+|||-.=.. .++.+..| |.+.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~-~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpy---i~aE~~~g---G~P~ 98 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWN-LHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPY---ICAEWDNG---GLPA 98 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HH-HHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES------TTBGGG---G--G
T ss_pred HHHHHHHHhCCcceEEEecccc-ccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccce---ecccccch---hhhh
Confidence 7889999999999999999875 445544 35665566779999999999999999874321 12222111 2333
Q ss_pred CC------------hhhHHHHHHHHHHHHHHhcC-----CCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 310 WG------------DSNVADTVAVIDFLAARYAN-----RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 310 W~------------~~~~~~~~~~w~~lA~ryk~-----~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
|. +...+...++++.|++..+. ...|+++++=||.... ..-+++++.+.++.|+...+.
T Consensus 99 Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~----~~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 99 WLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY----GTDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp GGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT----SS-HHHHHHHHHHHHHTT-SS
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC----cccHhHHHHHHHHHHHhhCcc
Confidence 42 23444555566666554433 2478899999997632 234667778888888888774
Q ss_pred EEEEe
Q 010600 373 YVIMS 377 (506)
Q Consensus 373 ~Viv~ 377 (506)
++...
T Consensus 175 ~~~~t 179 (319)
T PF01301_consen 175 VLLYT 179 (319)
T ss_dssp SBEEE
T ss_pred ceeec
Confidence 44443
No 34
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.25 E-value=1.9e-05 Score=79.76 Aligned_cols=136 Identities=12% Similarity=0.108 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCCCEEEeCcCcc-ccc-C----CCC------CC-----CCccchHHHHHHHHHHHHHcCCEEEEe-cCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWW-IAN-D----PTP------PK-----PFVGGSSKVLDNAFDWAEKYGVKVIVD-LHAA 291 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~-~~~-~----~~~------~~-----~~~~~~l~~ld~~v~~a~k~Gi~VILD-lH~~ 291 (506)
+..++..|+.|||+||+-+--. ... . +.. +. ..++.+++.+|++|+.|.++||.+-|= +|..
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~ 112 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGC 112 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-HH
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECC
Confidence 4568888999999999865321 111 0 000 00 134679999999999999999999553 4522
Q ss_pred CCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 010600 292 PGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST 371 (506)
Q Consensus 292 pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~ 371 (506)
+.. .+.+..+. . .-..+....+++.|++||+..|+|+ |-|.||=. ..+.-.+.++++.+.||+.+|.
T Consensus 113 ~~~-~~~Wg~~~----~---~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~----~~~~~~~~w~~~~~~i~~~dp~ 179 (289)
T PF13204_consen 113 PYV-PGTWGFGP----N---IMPPENAERYGRYVVARYGAYPNVI-WILGGDYF----DTEKTRADWDAMARGIKENDPY 179 (289)
T ss_dssp HHH--------T----T---SS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS------TTSSHHHHHHHHHHHHHH--S
T ss_pred ccc-cccccccc----c---CCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccC----CCCcCHHHHHHHHHHHHhhCCC
Confidence 210 01111110 0 1456778899999999999999998 99999972 1233455666888899999998
Q ss_pred eEEEEeC
Q 010600 372 AYVIMSN 378 (506)
Q Consensus 372 ~~Viv~~ 378 (506)
+++.+++
T Consensus 180 ~L~T~H~ 186 (289)
T PF13204_consen 180 QLITIHP 186 (289)
T ss_dssp S-EEEEE
T ss_pred CcEEEeC
Confidence 8888885
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.12 E-value=0.0001 Score=68.37 Aligned_cols=137 Identities=23% Similarity=0.242 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCCEEEeCc-Cccc-ccCCCC--CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPV-GWWI-ANDPTP--PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv-~~~~-~~~~~~--~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~ 305 (506)
+++|+.|++.|+++|=|-. ++.. ...|.. +..+....-+.|+.+++.|.++||+|.|.|.-.+.. +..
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~----w~~---- 94 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDY----WDQ---- 94 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchh----hhc----
Confidence 7999999999999996531 1110 001111 111223456789999999999999999999866532 111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCC
Q 010600 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (506)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 380 (506)
+... ...+.-..+.+.|+++|+.+|++.||=|-.|+.... ..-....+.+.+.++++.++.+|+|++-+
T Consensus 95 ~~~~---~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~s~~~Pv~ISpf~ 163 (166)
T PF14488_consen 95 GDLD---WEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQISPGKPVMISPFI 163 (166)
T ss_pred cCHH---HHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHhCCCCCeEEecCc
Confidence 1122 233444568889999999999999999999998532 22356677788888999899999998543
No 36
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.96 E-value=0.00027 Score=72.54 Aligned_cols=233 Identities=16% Similarity=0.221 Sum_probs=133.2
Q ss_pred HHHHHHhCCCCEEEeCcC-cccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEE---EecCCCCCCCCCCCCCCCCCCC
Q 010600 232 DFKFLSSNGINAVRIPVG-WWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVI---VDLHAAPGSQNGNEHSATRDGF 307 (506)
Q Consensus 232 d~~~ia~~G~N~VRIPv~-~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VI---LDlH~~pg~qng~~~sg~~~g~ 307 (506)
....+-..-||.|=..-. -|....|.++ .+ .++..|++++||+++||.|- |=.|. |.+.+-.. .
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g-~~---~~~~~D~~~~~a~~~g~~vrGH~LvW~~----~~P~w~~~----~ 93 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPEPG-RF---NFESADAILDWARENGIKVRGHTLVWHS----QTPDWVFN----L 93 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESBTT-BE---E-HHHHHHHHHHHHTT-EEEEEEEEESS----SS-HHHHT----S
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCCCC-cc---CccchhHHHHHHHhcCcceeeeeEEEcc----cccceeee----c
Confidence 466666667888876422 1333344332 22 57899999999999999985 33332 22111100 0
Q ss_pred CCCChh----hHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCC-----ChHHHH-----HHHHHHHHHHHhcCCCeE
Q 010600 308 QEWGDS----NVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-----ALDTLK-----SYYKAGYDAVRKYTSTAY 373 (506)
Q Consensus 308 ~~W~~~----~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~-----~~~~~~-----~~~~~~~~aIR~~~p~~~ 373 (506)
..+.+. ..+...+.++.+++||++...|..||++|||..... ....|. .|+..+++..|+.+|+..
T Consensus 94 ~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~ 173 (320)
T PF00331_consen 94 ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNAK 173 (320)
T ss_dssp TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSE
T ss_pred cCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCcE
Confidence 011212 466777999999999998888999999999986432 112233 588999999999999999
Q ss_pred EEEeCCCCCCCh--hhhhc-------ccCCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEE
Q 010600 374 VIMSNRLGPADH--KELLS-------FASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTF 444 (506)
Q Consensus 374 Viv~~~~~~~~~--~~~~~-------~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~ 444 (506)
+++.+..--... ..+.. ...+-+.+-+..|.-... . .+.+.+ .+..+.. .|.++.
T Consensus 174 L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~-------~----~~~i~~----~l~~~~~-~Gl~i~ 237 (320)
T PF00331_consen 174 LFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGY-------P----PEQIWN----ALDRFAS-LGLPIH 237 (320)
T ss_dssp EEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTS-------S----HHHHHH----HHHHHHT-TTSEEE
T ss_pred EEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCC-------C----HHHHHH----HHHHHHH-cCCceE
Confidence 999742111111 11211 113467899999976431 1 223322 2233333 367799
Q ss_pred EEecCCCCCCCC---CCHHHHHHHHHHHHHHHhcC----CCcEEEEecccCCCCCC
Q 010600 445 VGEWTCEWNVKD---ASKQDYQRFANAQLDVYGRA----TFGWAYWAHKCEANHWS 493 (506)
Q Consensus 445 vGEfg~~~~~~~---~~~~~~~~~~~~q~~~~~~~----~~Gw~~W~~k~~~~~Ws 493 (506)
|+|+-..-.... ...+...+++++.++++-++ .-|.++|.+.. +.+|-
T Consensus 238 ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D-~~sW~ 292 (320)
T PF00331_consen 238 ITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTD-GYSWR 292 (320)
T ss_dssp EEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBT-TGSTT
T ss_pred EEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCC-CCccc
Confidence 999965432211 11233445555555555432 46889998876 34443
No 37
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.0022 Score=64.31 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCC-CCCCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecC
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLHAAP-GSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINE 343 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH~~p-g~qng~~~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NE 343 (506)
.++.=|.+++.|++|||.+ --|+.- .+|.+.+-.+. ++. +...+...+.+..++.|||+. +..||++||
T Consensus 80 ~Fe~AD~ia~FAr~h~m~l--hGHtLvW~~q~P~W~~~~-----e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVVNE 150 (345)
T COG3693 80 NFEAADAIANFARKHNMPL--HGHTLVWHSQVPDWLFGD-----ELSKEALAKMVEEHIKTVVGRYKGS--VASWDVVNE 150 (345)
T ss_pred CccchHHHHHHHHHcCCee--ccceeeecccCCchhhcc-----ccChHHHHHHHHHHHHHHHHhccCc--eeEEEeccc
Confidence 4788999999999999976 223221 23433333221 122 456667778999999999997 788999999
Q ss_pred CCCCCC--ChHHHH------HHHHHHHHHHHhcCCCeEEEEeCC-CCCCCh---------hhhhcccCCCCcEEEEEEee
Q 010600 344 PLAPGV--ALDTLK------SYYKAGYDAVRKYTSTAYVIMSNR-LGPADH---------KELLSFASGLSRVVIDVHYY 405 (506)
Q Consensus 344 P~~~~~--~~~~~~------~~~~~~~~aIR~~~p~~~Viv~~~-~~~~~~---------~~~~~~~~~~~nvv~s~H~Y 405 (506)
|....- -...|. ++++.++..-|+.+|+..+++.+. ...... ..+..-..+-+.+-+..|.=
T Consensus 151 ~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~ 230 (345)
T COG3693 151 AVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFS 230 (345)
T ss_pred ccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeec
Confidence 986321 112333 488899999999999999988753 211111 11222123467899999932
Q ss_pred ccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCCC
Q 010600 406 NLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCE 451 (506)
Q Consensus 406 ~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~~ 451 (506)
. .+ .+.+ ..+ ..+....+. |-+++|+|+=..
T Consensus 231 ~----~~--~~~~----~~~----~a~~~~~k~-Gl~i~VTELD~~ 261 (345)
T COG3693 231 G----DG--PSIE----KMR----AALLKFSKL-GLPIYVTELDMS 261 (345)
T ss_pred C----CC--CCHH----HHH----HHHHHHhhc-CCCceEEEeeee
Confidence 1 11 1111 111 223344455 767999999543
No 38
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.00032 Score=77.63 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=88.5
Q ss_pred CHHHHHHHHhCCCCEEEe-CcCcccccCCCCCCCCccchHHHHHHH-HHHHHHcCCEEEEecC---CCCCCC-CCC----
Q 010600 229 TDEDFKFLSSNGINAVRI-PVGWWIANDPTPPKPFVGGSSKVLDNA-FDWAEKYGVKVIVDLH---AAPGSQ-NGN---- 298 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRI-Pv~~~~~~~~~~~~~~~~~~l~~ld~~-v~~a~k~Gi~VILDlH---~~pg~q-ng~---- 298 (506)
-++|++.||++|+|+||+ .+.| ...+|+.+ .|+ +..+|.. ++.|.+.||+|||--- +.|..- ++.
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW-~~~eP~eG-~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAW-NLHEPEEG-KFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEe-eccCcccc-ccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 389999999999999999 7765 56667554 443 3356665 9999999999999652 111110 000
Q ss_pred --CCCCCCCCCCCCC------hhhHHHHHHHHHHHHHH-hcCCCceeEEEeecCCCC----CCCChHHHHHHHHHHHHHH
Q 010600 299 --EHSATRDGFQEWG------DSNVADTVAVIDFLAAR-YANRPSLAAIELINEPLA----PGVALDTLKSYYKAGYDAV 365 (506)
Q Consensus 299 --~~sg~~~g~~~W~------~~~~~~~~~~w~~lA~r-yk~~~~V~g~eL~NEP~~----~~~~~~~~~~~~~~~~~aI 365 (506)
+..+.......|. +.+.+....+.++|++| |++++.|++|.+=||=.. ...+...++.|.++-+..+
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l 186 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSL 186 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchH
Confidence 0000001111121 44666777788999999 999999999999998322 1234456677777777655
Q ss_pred HhcCC
Q 010600 366 RKYTS 370 (506)
Q Consensus 366 R~~~p 370 (506)
...+.
T Consensus 187 ~~ln~ 191 (673)
T COG1874 187 DNLNE 191 (673)
T ss_pred Hhhhh
Confidence 55443
No 39
>PLN03059 beta-galactosidase; Provisional
Probab=97.61 E-value=0.00076 Score=76.07 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=98.2
Q ss_pred HHHhhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCC
Q 010600 219 VLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN 298 (506)
Q Consensus 219 ~~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~ 298 (506)
+..+.| ++-++.+|++|+|+|=.=|.|- +.+|.+ +.|+=....-|.++++.|++.||+|||-.=-+ ..+.
T Consensus 56 ~~p~~W-----~d~L~k~Ka~GlNtV~tYV~Wn-~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPY---IcAE 125 (840)
T PLN03059 56 STPEMW-----PDLIQKAKDGGLDVIQTYVFWN-GHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPY---ICAE 125 (840)
T ss_pred CCHHHH-----HHHHHHHHHcCCCeEEEEeccc-ccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcc---eeee
Confidence 345567 7889999999999999988764 555654 45655567789999999999999999953211 1222
Q ss_pred CCCCCCCCCCCCC------------hhhHHHHHHHHHHHHHHhcC-------CCceeEEEeecCCCCCCC-ChHHHHHHH
Q 010600 299 EHSATRDGFQEWG------------DSNVADTVAVIDFLAARYAN-------RPSLAAIELINEPLAPGV-ALDTLKSYY 358 (506)
Q Consensus 299 ~~sg~~~g~~~W~------------~~~~~~~~~~w~~lA~ryk~-------~~~V~g~eL~NEP~~~~~-~~~~~~~~~ 358 (506)
+..| |.+.|. +...+...++++.|..+.+. -.-|++.++=||=..... ....=++|+
T Consensus 126 w~~G---GlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl 202 (840)
T PLN03059 126 WNFG---GFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYT 202 (840)
T ss_pred ecCC---CCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHH
Confidence 2222 233342 34455566677777776643 236888999999432100 001126788
Q ss_pred HHHHHHHHhcCCCeEEEEeC
Q 010600 359 KAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 359 ~~~~~aIR~~~p~~~Viv~~ 378 (506)
+.+.++.++.+.+.+++.++
T Consensus 203 ~~l~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 203 KWAADMAVKLGTGVPWVMCK 222 (840)
T ss_pred HHHHHHHHHcCCCcceEECC
Confidence 88888889999888888875
No 40
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.50 E-value=0.0095 Score=64.61 Aligned_cols=229 Identities=18% Similarity=0.236 Sum_probs=118.2
Q ss_pred HhCCCCEEEeCcCcccccC------CCCCC----CCc--cc----hHHHHHHHHHHHHHcCCEEEEecCCCCCCC--CCC
Q 010600 237 SSNGINAVRIPVGWWIAND------PTPPK----PFV--GG----SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQ--NGN 298 (506)
Q Consensus 237 a~~G~N~VRIPv~~~~~~~------~~~~~----~~~--~~----~l~~ld~~v~~a~k~Gi~VILDlH~~pg~q--ng~ 298 (506)
..+|++.+|+||+--.+.. ..+.+ .|. .+ .+..|+++.+.. -+|+++-..-.+|+.. |+.
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~--~~lki~aSpWSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAIN--PNLKIFASPWSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHH--TT-EEEEEES---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhC--CCcEEEEecCCCCHHHccCCc
Confidence 3579999999997432221 11111 110 00 133444443332 2599999999998752 221
Q ss_pred CC-CCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCC-ceeEEEeecCCCCC----------CCChHHHHHHHHH-HHHHH
Q 010600 299 EH-SATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAP----------GVALDTLKSYYKA-GYDAV 365 (506)
Q Consensus 299 ~~-sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~-~V~g~eL~NEP~~~----------~~~~~~~~~~~~~-~~~aI 365 (506)
-. .|...+... +...+.+.++.....+.|+.+. .|.++-+-|||... ..+++..++|.+. +..++
T Consensus 188 ~~g~g~l~g~~~--~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l 265 (496)
T PF02055_consen 188 MNGGGSLKGSLG--DEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPAL 265 (496)
T ss_dssp SCSS-BBSCGTT--SHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHH
T ss_pred CcCCCccCCCCC--chhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 11 121111110 2455667777777777888776 78999999999841 1356778888876 88899
Q ss_pred HhcCC--CeEEEE-eCCCCC-CC-hhhhhccc-CCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcC
Q 010600 366 RKYTS--TAYVIM-SNRLGP-AD-HKELLSFA-SGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSN 439 (506)
Q Consensus 366 R~~~p--~~~Viv-~~~~~~-~~-~~~~~~~~-~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 439 (506)
|+.++ +..|++ ...+.. .+ +...+..+ ...--..+.+|.|.. + ...+.+..+. .+..
T Consensus 266 ~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g-~------~~~~~l~~~h----------~~~P 328 (496)
T PF02055_consen 266 RKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGG-D------PSPQALDQVH----------NKFP 328 (496)
T ss_dssp HTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTC-S-------HCHHHHHHH----------HHST
T ss_pred HhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCC-C------chhhHHHHHH----------HHCC
Confidence 99876 555554 322211 11 12222211 122347899999963 1 1111222221 1233
Q ss_pred CCcEEEEecCCC-CCCC----CCCHHHHHHHHHHHHHHHhcCCCcEEEEecc
Q 010600 440 GPLTFVGEWTCE-WNVK----DASKQDYQRFANAQLDVYGRATFGWAYWAHK 486 (506)
Q Consensus 440 gp~v~vGEfg~~-~~~~----~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k 486 (506)
...++.+|-... +..+ ..+-+...+|....+..+.....||..|.+-
T Consensus 329 ~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~ 380 (496)
T PF02055_consen 329 DKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLA 380 (496)
T ss_dssp TSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESE
T ss_pred CcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeee
Confidence 455889997542 2211 1123444567777777787777799999864
No 41
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.47 E-value=0.011 Score=61.30 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=62.7
Q ss_pred HHHHHHHcCCEEEEecCCCCCC---CCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCC-ceeEEEeecCCCCC-
Q 010600 273 AFDWAEKYGVKVIVDLHAAPGS---QNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAP- 347 (506)
Q Consensus 273 ~v~~a~k~Gi~VILDlH~~pg~---qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~-~V~g~eL~NEP~~~- 347 (506)
+++.|++||+..++-+-..|.. .||...++. .+...-.+...+.+..++..++++|+... .|--++.+|||...
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~-~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGD-DGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S--SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCC-ccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 6789999999988866555432 233322211 11111115778899999999999996654 56668999999853
Q ss_pred --------CCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 348 --------GVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 348 --------~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
..+.+...++++.+..++++.+.+..|++++
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 1345678899999999999999988777763
No 42
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.00067 Score=72.39 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 308 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~-~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~ 308 (506)
++|++.|+++|+++-|+.|+|-.++.... ....++..++....+|+...++||..+|.|.+..-.|.- .+.+.
T Consensus 94 keDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~L------eDeYg 167 (524)
T KOG0626|consen 94 KEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQAL------EDEYG 167 (524)
T ss_pred HHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHH------HHHhc
Confidence 79999999999999999999865553322 234667899999999999999999999999865322211 12244
Q ss_pred CCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC
Q 010600 309 EWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (506)
Q Consensus 309 ~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~ 346 (506)
.|. +..+++|.++-+..-++|.|.-.. |=.+|||+.
T Consensus 168 GwLn~~ivedF~~yA~~CF~~fGDrVK~--WiT~NEP~v 204 (524)
T KOG0626|consen 168 GWLNPEIVEDFRDYADLCFQEFGDRVKH--WITFNEPNV 204 (524)
T ss_pred cccCHHHHHHHHHHHHHHHHHhccccee--eEEecccce
Confidence 566 788999999999999999986543 668899983
No 43
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=97.33 E-value=0.0024 Score=57.17 Aligned_cols=106 Identities=20% Similarity=0.325 Sum_probs=65.4
Q ss_pred ccCceeeEeeeeceeEEEEecCCCc-eEEecCCCCC-CcceEEEEeeCCceEEEEecCCeEEEeecCC----C-CceEE-
Q 010600 63 LDGTQVQFMSTKFQKYIAAESGGGT-IVVANRTSAS-GWETFRLWRVNETFYNFRVNNKQFIGLENQG----Q-GNGLV- 134 (506)
Q Consensus 63 ~~g~~~~~~s~~~~~~~~ae~~g~~-~~~anr~~~~-~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~----~-~~~~~- 134 (506)
-||.-|.|+| ..||||+|+--|.+ .+--+|.+.. .| +=+++.-+.+.+.||+.-|+|+++.+.. - |..++
T Consensus 5 ~d~~~VRLRS-~~~kYL~ADeDg~~Vs~~~~~~s~na~W-~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q 82 (142)
T PF04601_consen 5 PDGKHVRLRS-HHGKYLHADEDGEGVSQDRRGASLNAAW-TVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRVVQ 82 (142)
T ss_pred CCCCEEEEEe-cCCCEEEEcCCCCeEEECCCCCCCcceE-EEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEEEe
Confidence 3789999999 99999999865433 3333444333 23 2233333356789999999999998531 1 11222
Q ss_pred EeecCCCCCceEEEEEcCCCCcceEEeccCCceeEeccc
Q 010600 135 AVSNTAGYSETFQIVRKDGDSSRVRLSASNGMFIQAISE 173 (506)
Q Consensus 135 a~~~~~g~~EtF~iv~~~~~~~~v~i~a~nG~~Lqa~~~ 173 (506)
.....+...--.+-++.+ ..|.++..+|+||.|+|+
T Consensus 83 ~~~~~~d~~~~Wepvr~g---~~V~Lr~~~gr~LRANG~ 118 (142)
T PF04601_consen 83 TDPDRLDSSVEWEPVRDG---FYVKLRHRSGRYLRANGG 118 (142)
T ss_pred cCCccCCCCceEEEecCC---CEEEEEecCCceEEcCCC
Confidence 221122222223445543 469999999999999975
No 44
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.14 E-value=0.015 Score=57.26 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCceeEEEeecCCCCCC---CChHHHHHHHHHHHHHHHhcCCCeEEEEeCCC--CCC-------Chhh
Q 010600 320 AVIDFLAARYANRPSLAAIELINEPLAPG---VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL--GPA-------DHKE 387 (506)
Q Consensus 320 ~~w~~lA~ryk~~~~V~g~eL~NEP~~~~---~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~--~~~-------~~~~ 387 (506)
..++.+.+.-...+.|+ .+|||.... .+++...+.+++.++.+|. +...|+ ++.. ... ....
T Consensus 54 ~~~~~v~~~~~~~~~ll---~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~-sPa~~~~~~~~~~g~~Wl~~ 127 (239)
T PF11790_consen 54 DWLANVQNAHPGSKHLL---GFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLG-SPAVAFTNGGTPGGLDWLSQ 127 (239)
T ss_pred HHHHHHHhhccCcccee---eecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEE-CCeecccCCCCCCccHHHHH
Confidence 34455555422233555 569998743 5778888888888888885 444443 3322 111 1233
Q ss_pred hhcccC-CCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCCCCCCCCCCHHHHHHHH
Q 010600 388 LLSFAS-GLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDYQRFA 466 (506)
Q Consensus 388 ~~~~~~-~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~~~~~~~~~~~~~~~~~ 466 (506)
|+.... ...-.++++|.|.. +.+...+. +..+.+..+.||+|+|||+.......+.+...+|+
T Consensus 128 F~~~~~~~~~~D~iavH~Y~~--------~~~~~~~~--------i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl 191 (239)
T PF11790_consen 128 FLSACARGCRVDFIAVHWYGG--------DADDFKDY--------IDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFL 191 (239)
T ss_pred HHHhcccCCCccEEEEecCCc--------CHHHHHHH--------HHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHH
Confidence 443333 45778999999921 11211222 22222333577999999976434456778889999
Q ss_pred HHHHHHHhc-CCCcEEEEe
Q 010600 467 NAQLDVYGR-ATFGWAYWA 484 (506)
Q Consensus 467 ~~q~~~~~~-~~~Gw~~W~ 484 (506)
+..+..+++ ..+.-.+|-
T Consensus 192 ~~~~~~ld~~~~VeryawF 210 (239)
T PF11790_consen 192 RQALPWLDSQPYVERYAWF 210 (239)
T ss_pred HHHHHHHhcCCCeeEEEec
Confidence 999888875 334334443
No 45
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.1 Score=51.27 Aligned_cols=208 Identities=15% Similarity=0.185 Sum_probs=128.2
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
+.||+.|+..+. .||+ | . .....|+.+...+.+.|++|+|-+.-.+..+
T Consensus 66 ~sDLe~l~~~t~-~IR~---Y--~-----------sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~-------------- 114 (305)
T COG5309 66 ASDLELLASYTH-SIRT---Y--G-----------SDCNTLENVLPAAEASGFKVFLGIWPTDDIH-------------- 114 (305)
T ss_pred HhHHHHhccCCc-eEEE---e--e-----------ccchhhhhhHHHHHhcCceEEEEEeeccchh--------------
Confidence 689999999988 8997 1 1 1224477888899999999999876432211
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC-CCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCC-CChhh
Q 010600 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA-PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP-ADHKE 387 (506)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~-~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~-~~~~~ 387 (506)
...++ ....++ ..|...+.|.++-+-||-.. ...+.+++-++..++-.+|.+.+-+.+|.-.+.|.. .+-.+
T Consensus 115 ---~~~~~--til~ay-~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~ 188 (305)
T COG5309 115 ---DAVEK--TILSAY-LPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPE 188 (305)
T ss_pred ---hhHHH--HHHHHH-hccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChH
Confidence 11222 112222 23456678888889999754 346788999999999999998887777765554431 01112
Q ss_pred hhcccCCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCCCCC-----CCCCCHHHH
Q 010600 388 LLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN-----VKDASKQDY 462 (506)
Q Consensus 388 ~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~~~~-----~~~~~~~~~ 462 (506)
+. ...+.++.-.|.|. + ..+..+..........+.++.. .....+++|+|-|=+.+ ..-.+++..
T Consensus 189 l~---~~SDfia~N~~aYw--d----~~~~a~~~~~f~~~q~e~vqsa-~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq 258 (305)
T COG5309 189 LC---QASDFIAANAHAYW--D----GQTVANAAGTFLLEQLERVQSA-CGTKKTVWVTETGWPSDGRTYGSAVPSVANQ 258 (305)
T ss_pred Hh---hhhhhhhcccchhc--c----ccchhhhhhHHHHHHHHHHHHh-cCCCccEEEeeccCCCCCCccCCcCCChhHH
Confidence 22 34477888889983 3 2232222221111111212111 11226799999983322 223567888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEe
Q 010600 463 QRFANAQLDVYGRATFGWAYWA 484 (506)
Q Consensus 463 ~~~~~~q~~~~~~~~~Gw~~W~ 484 (506)
..+++..+..+.+.+..-++-+
T Consensus 259 ~~~~~~i~~~~~~~G~d~fvfe 280 (305)
T COG5309 259 KIAVQEILNALRSCGYDVFVFE 280 (305)
T ss_pred HHHHHHHHhhhhccCccEEEee
Confidence 8999998888887777766654
No 46
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.015 Score=66.27 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=73.9
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
+.|++.||++|+|+||.- +| |.. ++..++|.++||+||-|.-... .+.. ..
T Consensus 324 ~~dl~lmk~~n~N~vRts-Hy-----P~~------------~~~ydLcDelGllV~~Ea~~~~---~~~~------~~-- 374 (808)
T COG3250 324 ERDLKLMKEANMNSVRTS-HY-----PNS------------EEFYDLCDELGLLVIDEAMIET---HGMP------DD-- 374 (808)
T ss_pred HHHHHHHHHcCCCEEEec-CC-----CCC------------HHHHHHHHHhCcEEEEecchhh---cCCC------CC--
Confidence 689999999999999983 11 211 3467799999999999875321 1100 11
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
+.-.+....-++.+.+|-|++|+|+.|-+.||+..+.. ...++..+.+.+++..+-..
T Consensus 375 --~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~g~~--------~~~~~~~~k~~d~~r~~~~~ 432 (808)
T COG3250 375 --PEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGHGSN--------HWALYRWFKASDPTRPVQYE 432 (808)
T ss_pred --cchhHHHHHHHHHHHHhccCCCcEEEEeccccccCccc--------cHHHHHHHhhcCCccceecc
Confidence 23455666778889999999999999999999874211 12344455555666555544
No 47
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=96.87 E-value=0.25 Score=57.14 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEec---CCCCCCCC----------CCCC----CCCCCCCCCCC------hhhHHHHHHHHH
Q 010600 267 SKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN----------GNEH----SATRDGFQEWG------DSNVADTVAVID 323 (506)
Q Consensus 267 l~~ld~~v~~a~k~Gi~VILDl---H~~pg~qn----------g~~~----sg~~~g~~~W~------~~~~~~~~~~w~ 323 (506)
...|+++|+.|.++||+||||+ |...+... ++.+ .|.......+. +...+..++.++
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~ 482 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLV 482 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998 55442210 0000 01000001111 334455567777
Q ss_pred HHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCC
Q 010600 324 FLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (506)
Q Consensus 324 ~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 381 (506)
..++.|+=+. +-||++..-. ..+++++.+++|+.+|+.++ ++.+|.
T Consensus 483 ~W~~ey~VDG--FRfDlm~~~~---------~~f~~~~~~~l~~i~pdi~l-~GEgW~ 528 (898)
T TIGR02103 483 VWAKDYKVDG--FRFDLMGHHP---------KAQMLAAREAIKALTPEIYF-YGEGWD 528 (898)
T ss_pred HHHHHcCCCE--EEEechhhCC---------HHHHHHHHHHHHHhCCCEEE-EecCCC
Confidence 7777775433 2378886532 23566777788999997654 565664
No 48
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.14 Score=52.29 Aligned_cols=223 Identities=15% Similarity=0.137 Sum_probs=112.3
Q ss_pred hCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCC--CCCCCCCCCCCCCCCChhhH
Q 010600 238 SNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQ--NGNEHSATRDGFQEWGDSNV 315 (506)
Q Consensus 238 ~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~q--ng~~~sg~~~g~~~W~~~~~ 315 (506)
++||..+|+||.--.+.-...+++ ..+.|..+ +-+.++|++|+-.....|.+. ++.-+.| ..+... .+..
T Consensus 77 ~lg~si~Rv~I~~ndfsl~g~~d~----w~kels~A-k~~in~g~ivfASPWspPa~Mktt~~~ngg-~~g~Lk--~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLGGSADN----WYKELSTA-KSAINPGMIVFASPWSPPASMKTTNNRNGG-NAGRLK--YEKY 148 (433)
T ss_pred ccCceEEEEEecccccccCCCcch----hhhhcccc-hhhcCCCcEEEecCCCCchhhhhccCcCCc-cccccc--hhHh
Confidence 479999999996322111111111 22223222 227789999999888887652 1111111 111111 2334
Q ss_pred HHHHHHHHHHHHHhcCCC-ceeEEEeecCCCCCC------CChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCC-CCh-h
Q 010600 316 ADTVAVIDFLAARYANRP-SLAAIELINEPLAPG------VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP-ADH-K 386 (506)
Q Consensus 316 ~~~~~~w~~lA~ryk~~~-~V~g~eL~NEP~~~~------~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~-~~~-~ 386 (506)
..+.+++......++++. .+.++.+-|||.... ..+++..+|+.+- .+.+..+.-|++.+...- .+. .
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qy---l~si~~~~rV~~pes~~~~~~~~d 225 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQY---LASINAEMRVIIPESFKDLPNMSD 225 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHh---hhhhccccEEecchhccccccccc
Confidence 456667777777788875 788899999998632 2334444454443 334444555666543221 111 1
Q ss_pred h-hhcccCCCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCCCcEEEEecCC-CCCCCCCCHHHHHH
Q 010600 387 E-LLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTC-EWNVKDASKQDYQR 464 (506)
Q Consensus 387 ~-~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~gp~v~vGEfg~-~~~~~~~~~~~~~~ 464 (506)
. +.+......-.++..|.|.. +-+ ++ +..+ .. .+..++-+|+.|... .++...++++...-
T Consensus 226 p~lnDp~a~a~~~ilg~H~Ygg--~v~-----~~-p~~l----ak-----~~~~gKdlwmte~y~~esd~~s~dr~~~~~ 288 (433)
T COG5520 226 PILNDPKALANMDILGTHLYGG--QVS-----DQ-PYPL----AK-----QKPAGKDLWMTECYPPESDPNSADREALHV 288 (433)
T ss_pred ccccCHhHhcccceeEeeeccc--ccc-----cc-hhhH----hh-----CCCcCCceEEeecccCCCCCCcchHHHHHH
Confidence 1 11111223446899999963 100 00 1110 00 012356799999754 45543333333333
Q ss_pred HHHHHHHHHhcCCCcEEEEecccC
Q 010600 465 FANAQLDVYGRATFGWAYWAHKCE 488 (506)
Q Consensus 465 ~~~~q~~~~~~~~~Gw~~W~~k~~ 488 (506)
+....+...+...-|..+|-+.-+
T Consensus 289 ~~hi~~gm~~gg~~ayv~W~i~~~ 312 (433)
T COG5520 289 ALHIHIGMTEGGFQAYVWWNIRLD 312 (433)
T ss_pred HHHHHhhccccCccEEEEEEEeec
Confidence 333333333445557788877653
No 49
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=96.52 E-value=0.011 Score=56.08 Aligned_cols=116 Identities=22% Similarity=0.327 Sum_probs=86.1
Q ss_pred eeEeecCceeeecCCCCcCCccCCCCccccCceeeEeeeeceeEEEEecCCCceEEecCCCC---CCcceEEEEeeCCce
Q 010600 35 RAVNLGNWLVTEGWMKPSRFDDIPNKDLLDGTQVQFMSTKFQKYIAAESGGGTIVVANRTSA---SGWETFRLWRVNETF 111 (506)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~---~~we~f~~~~~~~~~ 111 (506)
..||-|||--.- .+++ +-| .|.++ ..-|.||.|+-.|..-|-+--+.. .+=|.|.++.+++++
T Consensus 30 ~~~~~g~w~~~~-----~~~~-------~~g-~v~ie-~~~~~yl~a~dng~ft~g~ph~~~~gp~p~e~f~avki~dsr 95 (246)
T KOG3962|consen 30 DAVNDGGWWDAN-----ELND-------IEG-TVAIE-IDDGTYLGAMDNGLFTLGAPHDEVDGPEPEEQFMAVKISDSR 95 (246)
T ss_pred hhhcCCcceecc-----ccce-------eeE-EEEEE-ecCceEEEEEecCceeeccCCccccCCCchhhEEEEEccCce
Confidence 678999985432 2222 334 66666 445888887766665555443333 466899999999999
Q ss_pred EEEEecCCeEEEeecCCCCceEEEeecCCCCCceEEEEEcCCCCcceEEeccCCceeEe
Q 010600 112 YNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSASNGMFIQA 170 (506)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~EtF~iv~~~~~~~~v~i~a~nG~~Lqa 170 (506)
++|++.=|+|++++. .+.|++...++|+-|+|..|-.. +++.+-+.||.+...
T Consensus 96 IaLKsGyGKYlsins---dglvvg~qeAvG~~EQw~~vFq~---~r~a~~as~s~~~~~ 148 (246)
T KOG3962|consen 96 IALKSGYGKYLSINS---DGLVVGRQEAVGSREQWEPVFQE---GRMALLASNSCFIRC 148 (246)
T ss_pred EEecccccceeeecC---CccEEEehhhcCcHhhchhhhhc---cceEEeeccceeEEe
Confidence 999999999999997 56899999999999999876664 467778888876654
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.41 E-value=0.081 Score=59.21 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCCCEEEe-CcCccc-----ccCCCC---C-CCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC-
Q 010600 230 DEDFKFLSSNGINAVRI-PVGWWI-----ANDPTP---P-KPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 295 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~~~-----~~~~~~---~-~~~~~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~q- 295 (506)
+.-++.|+++|+|+|=| |+.... ..++.. + ..| +..+.|+++|+.|.++||+||||+ |..+...
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~--Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 237 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF--GTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG 237 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc--CCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch
Confidence 44459999999999999 774211 111111 0 111 457899999999999999999997 5443210
Q ss_pred ----CC---CCCCCCC-CCCCCCC--------hhhHHHHHHHHHHHHHHhcCCCceeEEEee---------cCCC-----
Q 010600 296 ----NG---NEHSATR-DGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI---------NEPL----- 345 (506)
Q Consensus 296 ----ng---~~~sg~~-~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~---------NEP~----- 345 (506)
.+ +.+.... .....|. +..++..++..+...+.|.=+.- =+|.+ .+|.
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~--R~D~v~~~~~~~~~~~~~~~~~~ 315 (613)
T TIGR01515 238 LAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGL--RVDAVASMLYLDYSRDEGEWSPN 315 (613)
T ss_pred hhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEE--EEcCHHHhhhhcccccccccccc
Confidence 00 0011000 0112333 34555666777777776643321 12221 1221
Q ss_pred CC-CCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 346 AP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 346 ~~-~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
.. +.....-..+.+++.+.||+..|+.++|-+
T Consensus 316 ~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE 348 (613)
T TIGR01515 316 EDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAE 348 (613)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 00 001123467889999999999999888776
No 51
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.14 E-value=0.14 Score=56.47 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=75.8
Q ss_pred HHHHHHHhCCCCEEEe-CcC------cccccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCCC
Q 010600 231 EDFKFLSSNGINAVRI-PVG------WWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN 296 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~------~~~~~~~~~----~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~qn 296 (506)
+-++.|+++|+|+|=| |+. .| ..++.. ...| +..+.|+++|+.|.++||+||||+ |..+.+..
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~-GY~~~~~~~~~~~~--G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~ 191 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGW-GYDGVLPYAPHNAY--GGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY 191 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCC-CCCccCcccccccc--CCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc
Confidence 3489999999999998 552 11 111111 1112 468899999999999999999997 54432210
Q ss_pred -----CCCCCCCCCCCCCCC-------h---hhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 010600 297 -----GNEHSATRDGFQEWG-------D---SNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAG 361 (506)
Q Consensus 297 -----g~~~sg~~~g~~~W~-------~---~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~ 361 (506)
++.+. .....|. + ..++.+++..+...+.|+=+. +=+|+...-.. ..-..+.+++
T Consensus 192 ~~~~~~y~~~---~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDG--fR~D~~~~~~~-----~~~~~~l~~~ 261 (542)
T TIGR02402 192 LPRYAPYFTD---RYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDG--LRLDAVHAIAD-----TSAKHILEEL 261 (542)
T ss_pred ccccCccccC---CCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcE--EEEeCHHHhcc-----ccHHHHHHHH
Confidence 01100 1122332 2 344555566666666563332 11344333211 1124678888
Q ss_pred HHHHHhcCCC---eEEEEe
Q 010600 362 YDAVRKYTST---AYVIMS 377 (506)
Q Consensus 362 ~~aIR~~~p~---~~Viv~ 377 (506)
.+++|+..|+ .++|-+
T Consensus 262 ~~~~~~~~p~~~~~~li~E 280 (542)
T TIGR02402 262 AREVHELAAELRPVHLIAE 280 (542)
T ss_pred HHHHHHHCCCCceEEEEEe
Confidence 8899999888 554444
No 52
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.12 E-value=0.22 Score=56.05 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCEEEe-CcC------cccccCCCCCCCCc--cchHHHHHHHHHHHHHcCCEEEEec---CCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRI-PVG------WWIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQNG 297 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~------~~~~~~~~~~~~~~--~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~qng 297 (506)
+.-++.|+++|+|+|=| ||. .| ..++....... =+..+.|+++|+.|.++||+||||+ |..+.. ++
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~-GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~-~~ 251 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPLDGSW-GYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DG 251 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCCCCCC-CCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cc
Confidence 44469999999999996 552 11 11111100001 1468899999999999999999997 443221 11
Q ss_pred C---C------CCCC-CCCCCCCC--------hhhHHHHHHHHHHHHHHhcCCCceeEEEee-cC------------C--
Q 010600 298 N---E------HSAT-RDGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI-NE------------P-- 344 (506)
Q Consensus 298 ~---~------~sg~-~~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~-NE------------P-- 344 (506)
. + +... ......|. +..++..++..+...+.|.=+.- =+|.. +. |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~--R~D~~~~~~~~d~~~~~~~~~~~ 329 (633)
T PRK12313 252 LAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGL--RVDAVSNMLYLDYDEEGEWTPNK 329 (633)
T ss_pred ccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEE--EEcChhhhhhcccccccCcCCcc
Confidence 0 0 0000 00112342 44455566666666666543220 01211 11 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 345 LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
.....+. .-..+.+++.+.||+..|+.++|-+
T Consensus 330 ~~~~~~~-~~~~fl~~~~~~v~~~~p~~~liaE 361 (633)
T PRK12313 330 YGGRENL-EAIYFLQKLNEVVYLEHPDVLMIAE 361 (633)
T ss_pred cCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1111111 3457889999999999999877665
No 53
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=95.90 E-value=0.014 Score=59.44 Aligned_cols=170 Identities=21% Similarity=0.228 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHH-HH---HhcC-CC-ceeEEE
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFL-AA---RYAN-RP-SLAAIE 339 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~l-A~---ryk~-~~-~V~g~e 339 (506)
.+++.|++.+-|++-|++||..|-+..|... .......--|..- |+ +|.. .. .|-+||
T Consensus 107 t~~rwd~l~~F~~~tG~~liFgLNAL~g~~~----------------~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WE 170 (319)
T PF03662_consen 107 TMSRWDELNNFAQKTGLKLIFGLNALLGRRQ----------------LADRDWDGSWNSSNAQSLLKYTASKGYNIDSWE 170 (319)
T ss_dssp -----HHHHHHHHHHT-EEEEEE-TTTS-HH----------------HHHHHHHHHHHHH-TTTEEEEEESS-GGG----
T ss_pred chhHHHHHHHHHHHhCCEEEEEecccCCCCC----------------CCCCCcCCCCChHHHHHHHHHHHHcCCCccccc
Confidence 4678999999999999999999987765210 0001112233221 11 1221 12 466899
Q ss_pred eecCCCCCC----CChHHHHHHHHH---HHHHHHhcCCCeEEEEeC-CCCCCC-hhhhhcccCCCCcEEEEEEeeccCCC
Q 010600 340 LINEPLAPG----VALDTLKSYYKA---GYDAVRKYTSTAYVIMSN-RLGPAD-HKELLSFASGLSRVVIDVHYYNLFSN 410 (506)
Q Consensus 340 L~NEP~~~~----~~~~~~~~~~~~---~~~aIR~~~p~~~Viv~~-~~~~~~-~~~~~~~~~~~~nvv~s~H~Y~~f~~ 410 (506)
|-|||.... ++..++.+=+.+ +++.|.+.....+.++++ +..... ...|+.......-.+++.|+|.. +.
T Consensus 171 LGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~vT~H~Y~l-g~ 249 (319)
T PF03662_consen 171 LGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAVTWHHYNL-GS 249 (319)
T ss_dssp ----HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEEEEEEEEE---
T ss_pred cccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEEEEEecCC-CC
Confidence 999997532 343433332222 222222222233444543 222112 24454432222356899999964 21
Q ss_pred C-CCCCc----hhchHHHHHHhhhhhHHHHHhc--CCCcEEEEecCCCCC
Q 010600 411 N-FNGLN----VQQNIDYVNNQRASDLGAVTTS--NGPLTFVGEWTCEWN 453 (506)
Q Consensus 411 ~-~~~~~----~~~~i~~i~~~~~~~~~~~~~~--~gp~v~vGEfg~~~~ 453 (506)
. ..+.. .+..++.+.... +.+..+.+. .+.+++|||-|.+++
T Consensus 250 g~d~~l~~~~l~p~~Ld~~~~~~-~~~~~~v~~~~p~~~~WlGEtg~Ay~ 298 (319)
T PF03662_consen 250 GRDPALIEDFLNPSYLDTLADTF-QKLQQVVQEYGPGKPVWLGETGSAYN 298 (319)
T ss_dssp TT-TT-HHHHTS--HHHHHHHHH-HHHH-----HHH---EEEEEEEEEST
T ss_pred CchHHHHHHhcChhhhhHHHHHH-HHHhhhhcccCCCCCeEEeCcccccC
Confidence 1 11110 011223332222 122222222 235799999998875
No 54
>smart00642 Aamy Alpha-amylase domain.
Probab=95.89 E-value=0.03 Score=51.91 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCCEEEeCcCcccc--------cCCCCCCCCc--cchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIA--------NDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~--------~~~~~~~~~~--~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+.++.|+++|+|+|-|+=-+... .++....... -+..+.|+++|+.|+++||+||+|+=
T Consensus 23 ~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 23 EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45779999999999985322111 1111111111 14689999999999999999999985
No 55
>PLN02877 alpha-amylase/limit dextrinase
Probab=95.86 E-value=3.3 Score=48.37 Aligned_cols=110 Identities=8% Similarity=0.013 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEec---CCCCCCC----CCCC-----------CCCCCCCCCCCC-------hhhHHHHHHH
Q 010600 267 SKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ----NGNE-----------HSATRDGFQEWG-------DSNVADTVAV 321 (506)
Q Consensus 267 l~~ld~~v~~a~k~Gi~VILDl---H~~pg~q----ng~~-----------~sg~~~g~~~W~-------~~~~~~~~~~ 321 (506)
...++++|+.|.++||+||+|+ |...... +..+ ..|.... ..+. +...+..++.
T Consensus 465 I~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~n-s~c~n~~Ase~~mvrklIlDs 543 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIEN-STCVNNTASEHYMVDRLIVDD 543 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCccc-CCccCCCccCCHHHHHHHHHH
Confidence 5679999999999999999997 5542111 0000 0110000 0111 2233455677
Q ss_pred HHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCC
Q 010600 322 IDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (506)
Q Consensus 322 w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 381 (506)
++..++.|+=+. +=|||+..-.. ......++..+++-..++.++...+++++.+|.
T Consensus 544 l~yW~~ey~VDG--FRFDlmg~i~~--~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 544 LLNWAVNYKVDG--FRFDLMGHLMK--RTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHHHHHhCCCE--EEEEccccccH--HHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 777787785443 23788886431 111122222222222233345345666777774
No 56
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=95.86 E-value=0.26 Score=55.93 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCCCEEEe-CcCc------ccccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC-
Q 010600 230 DEDFKFLSSNGINAVRI-PVGW------WIANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 295 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~------~~~~~~~~---~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~q- 295 (506)
++-+..|+++|+|+|=| |+.- | ..++.. +.+. -+..+.|+++|+.|.++||+||||+ |......
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~w-GY~~~~~fa~~~~-~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~ 331 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSF-GYHVTNFFAVSSR-SGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLD 331 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCC-CcCcccCcccccc-cCCHHHHHHHHHHHHHCCCEEEEEeccccccccccc
Confidence 56799999999999987 4420 1 111111 1111 1356889999999999999999997 3332111
Q ss_pred ---------CCCCCCCCCCCCCCCC--------hhhHHHHHHHHHHHHHHhcCCC-------cee------EEEe---ec
Q 010600 296 ---------NGNEHSATRDGFQEWG--------DSNVADTVAVIDFLAARYANRP-------SLA------AIEL---IN 342 (506)
Q Consensus 296 ---------ng~~~sg~~~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~-------~V~------g~eL---~N 342 (506)
..+.+.+...-...|. +..++..++..+...+.|.=+. .++ +.+- .|
T Consensus 332 gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~ 411 (758)
T PLN02447 332 GLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYN 411 (758)
T ss_pred cccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcc
Confidence 1122222111112343 2344455566666666553321 121 0010 13
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 343 EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 343 EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
|-.....+ ..-..|.+.+-..|++..|+.+.|.++
T Consensus 412 ~~~g~~~d-~~a~~fL~~~N~~i~~~~p~~~~IAEd 446 (758)
T PLN02447 412 EYFGMATD-VDAVVYLMLANDLLHGLYPEAVTIAED 446 (758)
T ss_pred cccCCccC-hHHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 32221223 334568889999999999999887763
No 57
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.75 E-value=2.5 Score=47.32 Aligned_cols=136 Identities=16% Similarity=0.223 Sum_probs=73.9
Q ss_pred HHHHHHHhCCCCEEEe-CcCccc-------------ccCCCC---CC-CCc------cchHHHHHHHHHHHHHcCCEEEE
Q 010600 231 EDFKFLSSNGINAVRI-PVGWWI-------------ANDPTP---PK-PFV------GGSSKVLDNAFDWAEKYGVKVIV 286 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~~~~-------------~~~~~~---~~-~~~------~~~l~~ld~~v~~a~k~Gi~VIL 286 (506)
+-++.|+++|+|+|=| ||.-.. ..++.. ++ .|. .+..+.|+++|+.|.++||+|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 4589999999999987 553110 111110 00 011 11368899999999999999999
Q ss_pred ec---CCCCCCCCCCC-----------CCCCCCCCCCCC-------hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 287 DL---HAAPGSQNGNE-----------HSATRDGFQEWG-------DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 287 Dl---H~~pg~qng~~-----------~sg~~~g~~~W~-------~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
|+ |...+..+.+. ..|.......|. +..++..++..+..++.|+=+. +=+|++..-
T Consensus 248 DvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDG--fR~D~~~~~- 324 (605)
T TIGR02104 248 DVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDG--FRFDLMGIH- 324 (605)
T ss_pred EEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCE--EEEechhcC-
Confidence 97 54321111110 001000000111 3344555566666666663322 225656332
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 346 APGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
+. .+.+++.++|++..|+.+++-+
T Consensus 325 ----~~----~~~~~~~~~~~~~~p~~~ligE 348 (605)
T TIGR02104 325 ----DI----ETMNEIRKALNKIDPNILLYGE 348 (605)
T ss_pred ----CH----HHHHHHHHHHHhhCCCeEEEEc
Confidence 22 2556777888888998776544
No 58
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.13 Score=54.17 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=97.7
Q ss_pred HHHHHHHHhCCCCEEEeCcCccc----c---cC--CC--------C--------------CCCCcc----chHHHHHHHH
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWI----A---ND--PT--------P--------------PKPFVG----GSSKVLDNAF 274 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~----~---~~--~~--------~--------------~~~~~~----~~l~~ld~~v 274 (506)
|..++.||=+|+|.+=-|.+-.+ . +. .+ | ++|+.. ..+-.-+++|
T Consensus 81 eR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~LqkrIi 160 (666)
T KOG2233|consen 81 EREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQKRII 160 (666)
T ss_pred HhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHH
Confidence 88999999999999888755211 0 00 00 0 123322 2345557899
Q ss_pred HHHHHcCCEEEEecCCC----------CCCC----CCCCCCCCCCCCCCCC---------hhhHHHHHHHHHHHHHHhcC
Q 010600 275 DWAEKYGVKVIVDLHAA----------PGSQ----NGNEHSATRDGFQEWG---------DSNVADTVAVIDFLAARYAN 331 (506)
Q Consensus 275 ~~a~k~Gi~VILDlH~~----------pg~q----ng~~~sg~~~g~~~W~---------~~~~~~~~~~w~~lA~ryk~ 331 (506)
+...+.||.+||--.+- |.+. ..+++.. ..|. +-.++---.+++.+.+.|.+
T Consensus 161 drm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~-----s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 161 DRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFT-----SRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCC-----cceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 99999999999854321 2110 0111111 0111 22344445789999999999
Q ss_pred CCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 332 RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 332 ~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
-.+|.+-|..||-.++...++-++...++++++++++|++.+-++.+
T Consensus 236 ~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQg 282 (666)
T KOG2233|consen 236 VTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQG 282 (666)
T ss_pred cccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeec
Confidence 99999999999987766778889999999999999999998777663
No 59
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.62 E-value=0.44 Score=54.49 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCCCEEEe-CcCccc-----ccCCCCCCCCc--cchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC---
Q 010600 230 DEDFKFLSSNGINAVRI-PVGWWI-----ANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ--- 295 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~~~-----~~~~~~~~~~~--~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~q--- 295 (506)
+.-+..|+++|+|+|=| |+.-.. ..++....... =+..+.|+++|+.|.++||+||||+ |..+...
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 348 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLA 348 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchh
Confidence 44468999999999987 552100 11111100001 1468899999999999999999997 5433210
Q ss_pred --CC---CCCCCCC-CCCCCCC--------hhhHHHHHHHHHHHHHHhcCCCceeEEEee-cC---------------CC
Q 010600 296 --NG---NEHSATR-DGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI-NE---------------PL 345 (506)
Q Consensus 296 --ng---~~~sg~~-~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~-NE---------------P~ 345 (506)
.+ +.+.... .....|. +..++..++..+...++|.=+. +-+|.. ++ +.
T Consensus 349 ~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG--~R~D~v~~~~~~~~~~~~g~~~~~~~ 426 (726)
T PRK05402 349 RFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDG--LRVDAVASMLYLDYSRKEGEWIPNIY 426 (726)
T ss_pred ccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcE--EEECCHHHhhhccccccccccccccc
Confidence 00 0111100 1123342 3445555566666666654322 112211 21 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 346 APGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
..... ..-..+.+++.+.||+..|+.++|-+
T Consensus 427 ~~~~~-~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 427 GGREN-LEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred cCcCC-HHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 11111 23467889999999999999887766
No 60
>PLN02960 alpha-amylase
Probab=95.48 E-value=0.5 Score=54.17 Aligned_cols=147 Identities=17% Similarity=0.209 Sum_probs=82.1
Q ss_pred CHHHHHHHHhCCCCEEEe-CcCc------ccccCCCC---C-CCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCC
Q 010600 229 TDEDFKFLSSNGINAVRI-PVGW------WIANDPTP---P-KPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGS 294 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRI-Pv~~------~~~~~~~~---~-~~~~~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~ 294 (506)
+++-+..|+++|+|+|=| ||.- | ..++.. + ..| +..+.|+++|+.|.++||+||||+ |..+..
T Consensus 419 ~e~~LdYLk~LGvt~IeLmPv~e~~~~~sw-GY~~~~yfa~~~~y--Gtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~ 495 (897)
T PLN02960 419 TQKVLPHVKKAGYNAIQLIGVQEHKDYSSV-GYKVTNFFAVSSRF--GTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADE 495 (897)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCC-CCCcccCCCccccc--CCHHHHHHHHHHHHHCCCEEEEEecccccCCcc
Confidence 355699999999999997 5521 1 111111 1 112 357899999999999999999997 554432
Q ss_pred CCC----------CCCCCCCCCCCCCC--------hhhHHHHHHHHHHHHHHhcCCC-------ceeEEE--eecCCCC-
Q 010600 295 QNG----------NEHSATRDGFQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIE--LINEPLA- 346 (506)
Q Consensus 295 qng----------~~~sg~~~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~-------~V~g~e--L~NEP~~- 346 (506)
.++ +.+.+.......|. +...+..++......+.|.=+. +++-.+ ...++..
T Consensus 496 ~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~ 575 (897)
T PLN02960 496 MVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDL 575 (897)
T ss_pred ccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcc
Confidence 111 11111111123344 3344555566666666664332 222111 0011110
Q ss_pred ----CCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 347 ----PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 347 ----~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
.......-..+.+.+-..|++..|+.++|.++
T Consensus 576 ~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEd 611 (897)
T PLN02960 576 DEYCNQYVDRDALIYLILANEMLHQLHPNIITIAED 611 (897)
T ss_pred cccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 00111345568888888899999999888763
No 61
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.40 E-value=0.49 Score=52.86 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCCEEEe-CcCccc---ccCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 010600 231 EDFKFLSSNGINAVRI-PVGWWI---ANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~~~~---~~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
+-++.|+++|+|+|=| ||.-.. ..++......++ +..+.|+++|+.|+++||+||||+
T Consensus 183 ~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 183 EKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5589999999999998 442100 001110001111 468999999999999999999998
No 62
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=94.88 E-value=0.81 Score=54.28 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEec---CCCCCCC-----CCCCCCCCCCCC--CCCC--------hhhHHHHHHHHHHHHHH
Q 010600 267 SKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ-----NGNEHSATRDGF--QEWG--------DSNVADTVAVIDFLAAR 328 (506)
Q Consensus 267 l~~ld~~v~~a~k~Gi~VILDl---H~~pg~q-----ng~~~sg~~~g~--~~W~--------~~~~~~~~~~w~~lA~r 328 (506)
.+.|+++|+.|.++||+||||+ |....+. .++.+.-..++. ..|. +..++..++.++..++.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999997 5432210 011000000010 0111 34445666777777777
Q ss_pred hcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCC
Q 010600 329 YANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (506)
Q Consensus 329 yk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 380 (506)
|+=+. +=||++.. .+.+ +++.+..++++.+|+.+++ +.+|
T Consensus 634 y~VDG--FRfDl~g~-----~d~~----~~~~~~~~l~~~dP~~~li-GE~W 673 (1111)
T TIGR02102 634 FKVDG--FRFDMMGD-----HDAA----SIEIAYKEAKAINPNIIMI-GEGW 673 (1111)
T ss_pred cCCcE--EEEecccc-----CCHH----HHHHHHHHHHHhCcCEEEE-Eecc
Confidence 74433 23777753 1222 4556677788889976554 4444
No 63
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=94.78 E-value=0.48 Score=53.70 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCEEEe-CcCccc--------------ccCCCC---CC-CCcc-chHHHHHHHHHHHHHcCCEEEEec
Q 010600 231 EDFKFLSSNGINAVRI-PVGWWI--------------ANDPTP---PK-PFVG-GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~~~~--------------~~~~~~---~~-~~~~-~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.-++.|+++|+|+|=| ||.-.. ..++.. ++ .|.. +..+.|+++|+.|.++||+||||+
T Consensus 188 ~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 188 AMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred chhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4599999999999998 442110 111110 11 1211 357889999999999999999997
No 64
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.57 E-value=3.8 Score=41.99 Aligned_cols=249 Identities=14% Similarity=0.152 Sum_probs=116.9
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccc---cCCCCCC-C-C--ccchHHHHHHHHHHHHHcCCEEEEecCCCCCC----CCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIA---NDPTPPK-P-F--VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS----QNGN 298 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~---~~~~~~~-~-~--~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~----qng~ 298 (506)
++-++.|++.|+|+|=|.|--... .+...+. . . ......-++++++.++++|||+|-=+...... .++.
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe 95 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPE 95 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChh
Confidence 567899999999999997742110 1111110 0 0 11224668999999999999999866543211 0110
Q ss_pred C----CCCC--C-CCCCCCC----hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC-------------CCCCChHHH
Q 010600 299 E----HSAT--R-DGFQEWG----DSNVADTVAVIDFLAARYANRPSLAAIELINEPL-------------APGVALDTL 354 (506)
Q Consensus 299 ~----~sg~--~-~g~~~W~----~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~-------------~~~~~~~~~ 354 (506)
+ ..|. + .....|. ++..+..+++-+.+|+. +-..|- ||=+==|. ......+.+
T Consensus 96 ~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIq-fDYIRFP~~~~~~~l~y~~~~~~~~r~~aI 172 (316)
T PF13200_consen 96 WAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQ-FDYIRFPDEGRLSGLDYSENDTEESRVDAI 172 (316)
T ss_pred hEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEE-eeeeecCCCCcccccccCCCCCcchHHHHH
Confidence 0 0010 0 0123355 34455556666666651 111111 11111111 111134678
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeC--CCC------CCChhhhhcccCCCCcEEEEEEeeccC-CCC-CCCCchhch-HHH
Q 010600 355 KSYYKAGYDAVRKYTSTAYVIMSN--RLG------PADHKELLSFASGLSRVVIDVHYYNLF-SNN-FNGLNVQQN-IDY 423 (506)
Q Consensus 355 ~~~~~~~~~aIR~~~p~~~Viv~~--~~~------~~~~~~~~~~~~~~~nvv~s~H~Y~~f-~~~-~~~~~~~~~-i~~ 423 (506)
..|.+.+.+.+++.+-..-+=|-+ .+. ++++..+.. .-.++++=.|+.+ ... |.-..+..+ ..-
T Consensus 173 ~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~-----~vD~IsPMiYPSh~~~g~~g~~~P~~~PY~~ 247 (316)
T PF13200_consen 173 TDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAE-----YVDYISPMIYPSHYGPGFFGIDKPDLEPYEI 247 (316)
T ss_pred HHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhh-----hCCEEEecccccccCcccCCCCCcccChHHH
Confidence 899999999999876432222211 121 122233322 2345555555431 111 111111111 122
Q ss_pred HHHhhhhhHHHHHhcCCCcE---EEEecCCCCCCCCCCHHHHHHHHHHHHHHHhc-CCCcEEEEeccc
Q 010600 424 VNNQRASDLGAVTTSNGPLT---FVGEWTCEWNVKDASKQDYQRFANAQLDVYGR-ATFGWAYWAHKC 487 (506)
Q Consensus 424 i~~~~~~~~~~~~~~~gp~v---~vGEfg~~~~~~~~~~~~~~~~~~~q~~~~~~-~~~Gw~~W~~k~ 487 (506)
+...+......+.....+++ ++--|...|... ..+..-.+.+++|+++... ..-||.+|.-.+
T Consensus 248 v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~-~~~~Yg~~ev~aQI~A~~d~g~~~~llWna~n 314 (316)
T PF13200_consen 248 VYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGK-NYKEYGPEEVRAQIQALKDAGIEGWLLWNASN 314 (316)
T ss_pred HHHHHHHHHHHhhcCCCCCeEeccccccccccccc-CccccCHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 22222221112222111222 355566555322 1222236678889887665 566999997643
No 65
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=94.53 E-value=0.48 Score=39.94 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=51.2
Q ss_pred CceeeEeeeeceeEEEEecCC---CceEEecCCCCCCcceEEEEeeCCceEEEEec-CCeEEEeec
Q 010600 65 GTQVQFMSTKFQKYIAAESGG---GTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLEN 126 (506)
Q Consensus 65 g~~~~~~s~~~~~~~~ae~~g---~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~-~~~~v~~~~ 126 (506)
+....|+++..|+||.+..++ |+.|+.-...-..-++|+|.+.++++|.|+.. .++.+.+.+
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~ 79 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAG 79 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGG
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECC
Confidence 457999999999999999764 56666544445888999999999999999998 688888875
No 66
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.50 E-value=1.6 Score=49.60 Aligned_cols=144 Identities=17% Similarity=0.266 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCCCEEEe-CcC------cccccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC-
Q 010600 230 DEDFKFLSSNGINAVRI-PVG------WWIANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 295 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~------~~~~~~~~~---~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~q- 295 (506)
++-+..|+++|+|+|=| |+. .| ..++.. +.+ .-+..+.|+++|+.|.++||+||||+ |..+...
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~w-GY~~~~~~a~~~-~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~ 350 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSW-GYQPLGLYAPTA-RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHG 350 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCC-CCCCCcCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccc
Confidence 55689999999999987 552 12 112211 111 11467899999999999999999997 4332110
Q ss_pred -C---C---CCCCCCCCC-CCCCC--------hhhHHHHHHHHHHHHHHhcCCC-------ceeEEE--------eecCC
Q 010600 296 -N---G---NEHSATRDG-FQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIE--------LINEP 344 (506)
Q Consensus 296 -n---g---~~~sg~~~g-~~~W~--------~~~~~~~~~~w~~lA~ryk~~~-------~V~g~e--------L~NEP 344 (506)
. + +.+...+.+ ...|. +...+..++......+.|.=+. .++-.| +-|+-
T Consensus 351 l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~ 430 (730)
T PRK12568 351 LAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAH 430 (730)
T ss_pred cccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccccccccccccc
Confidence 0 0 111111111 23343 3444555565565555553321 111011 11221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 345 LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
. ...+ ..-..+.+++-++|++..|+.++|-+
T Consensus 431 g-g~en-~ea~~Fl~~ln~~v~~~~P~~~~IAE 461 (730)
T PRK12568 431 G-GREN-LEAVAFLRQLNREIASQFPGVLTIAE 461 (730)
T ss_pred C-CccC-hHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 0 0111 13457899999999999999988776
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.46 E-value=0.078 Score=52.94 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCEEEeCcCccc-----ccCCCCCCCCc--cchHHHHHHHHHHHHHcCCEEEEec
Q 010600 231 EDFKFLSSNGINAVRIPVGWWI-----ANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~-----~~~~~~~~~~~--~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
+.++.|+++|+|+|-|+=-+.. ..++......+ =+..+.|+++|+.|+++||+||||+
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 4588999999999999532211 00110000001 1578999999999999999999998
No 68
>PRK14705 glycogen branching enzyme; Provisional
Probab=94.37 E-value=1.2 Score=53.38 Aligned_cols=144 Identities=20% Similarity=0.260 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCCEEEe-CcC------cccccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCC-
Q 010600 230 DEDFKFLSSNGINAVRI-PVG------WWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGS- 294 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~------~~~~~~~~~----~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~- 294 (506)
++-++.||++|+|+|=| ||. .| ..++.. ...| +..+.|+++|+.|.++||+||||+ |..+..
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~sw-GY~~~~y~ap~~ry--Gt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~ 845 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSW-GYQVTSYFAPTSRF--GHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW 845 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCC-CCCccccCCcCccc--CCHHHHHHHHHHHHHCCCEEEEEeccccCCcchh
Confidence 44579999999999986 652 12 122211 1112 468889999999999999999997 432211
Q ss_pred ----CCC---CCCCCCC-CCCCCCC--------hhhHHHHHHHHHHHHHHhcCCC-ceeE------EEeec-----CCCC
Q 010600 295 ----QNG---NEHSATR-DGFQEWG--------DSNVADTVAVIDFLAARYANRP-SLAA------IELIN-----EPLA 346 (506)
Q Consensus 295 ----qng---~~~sg~~-~g~~~W~--------~~~~~~~~~~w~~lA~ryk~~~-~V~g------~eL~N-----EP~~ 346 (506)
-.| +.|.... .....|. +...+..++......++|.=+. .+-+ .|--- .|..
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~ 925 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNR 925 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccc
Confidence 000 1111111 1123453 3444555566666666665432 1111 01000 1221
Q ss_pred C--CCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 347 P--GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 347 ~--~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
. ..+ ..-..+.+++.+.|++..|+.++|-+
T Consensus 926 ~gg~en-~~ai~fl~~ln~~v~~~~p~~~~IAE 957 (1224)
T PRK14705 926 FGGREN-LEAISFLQEVNATVYKTHPGAVMIAE 957 (1224)
T ss_pred cCCccC-hHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1 112 23456889999999999999887776
No 69
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=94.26 E-value=0.17 Score=51.68 Aligned_cols=145 Identities=18% Similarity=0.186 Sum_probs=77.3
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccc-------c------------CCC------------CCCC----CccchHHHHHHHH
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIA-------N------------DPT------------PPKP----FVGGSSKVLDNAF 274 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~-------~------------~~~------------~~~~----~~~~~l~~ld~~v 274 (506)
|..++.||=.|+|.+=-+++-... + .|. =++| +.+...+.=.+++
T Consensus 22 EreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq~kIl 101 (333)
T PF05089_consen 22 EREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQKKIL 101 (333)
T ss_dssp HHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999987776652111 0 010 0122 2344566667799
Q ss_pred HHHHHcCCEEEEecCC----------CCCCC---CCCCCCCCCCCCCCCC----hhhHHHHHHHHHHHHHHhcCCCceeE
Q 010600 275 DWAEKYGVKVIVDLHA----------APGSQ---NGNEHSATRDGFQEWG----DSNVADTVAVIDFLAARYANRPSLAA 337 (506)
Q Consensus 275 ~~a~k~Gi~VILDlH~----------~pg~q---ng~~~sg~~~g~~~W~----~~~~~~~~~~w~~lA~ryk~~~~V~g 337 (506)
+..++.||..||=--. .|+.. -+.+..- ..+.|. +...+-...+.+...+.|. ...+.+
T Consensus 102 ~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f---~~~~~L~P~dplF~~i~~~F~~~q~~~yG-~~~~Y~ 177 (333)
T PF05089_consen 102 DRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGF---CRPYFLDPTDPLFAEIAKLFYEEQIKLYG-TDHIYA 177 (333)
T ss_dssp HHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTE---E--EEE-SS--HHHHHHHHHHHHHHHHH----SEEE
T ss_pred HHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCC---CCCceeCCCCchHHHHHHHHHHHHHHhcC-CCceeC
Confidence 9999999999993221 01110 0000000 001111 2223344567888888897 778999
Q ss_pred EEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 338 IELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 338 ~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
.|+.||-..+....+.+.+..+++++++++.+|+++-++.+
T Consensus 178 ~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 178 ADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp --TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred CCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 99999976655566779999999999999999998776663
No 70
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=94.19 E-value=0.14 Score=57.62 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=47.5
Q ss_pred ccccCCHHHHHHHHhCCCCEEEe-CcCcccccC--------------CC----CCCCCc-----cchHHHHHHHHHHHHH
Q 010600 224 WDSYITDEDFKFLSSNGINAVRI-PVGWWIAND--------------PT----PPKPFV-----GGSSKVLDNAFDWAEK 279 (506)
Q Consensus 224 w~~~ite~d~~~ia~~G~N~VRI-Pv~~~~~~~--------------~~----~~~~~~-----~~~l~~ld~~v~~a~k 279 (506)
+.....+..++.||++|+++|.| ||..+...+ |. |...|. ...+..|+.+|+.+.+
T Consensus 197 y~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHk 276 (697)
T COG1523 197 YLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHK 276 (697)
T ss_pred eehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHH
Confidence 33344566699999999999996 765432211 10 011122 2358889999999999
Q ss_pred cCCEEEEec---CCCC
Q 010600 280 YGVKVIVDL---HAAP 292 (506)
Q Consensus 280 ~Gi~VILDl---H~~p 292 (506)
+||.||||+ |.+.
T Consensus 277 aGI~VILDVVfNHTae 292 (697)
T COG1523 277 AGIEVILDVVFNHTAE 292 (697)
T ss_pred cCCEEEEEEeccCccc
Confidence 999999998 7754
No 71
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=93.62 E-value=0.68 Score=41.90 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=67.2
Q ss_pred eEeeeeceeEEEEecCCC---ceEEecCC-CCCCcceEEEEe--eCCceEEEEec-CCeEEEeecCCCCceEEEeecCCC
Q 010600 69 QFMSTKFQKYIAAESGGG---TIVVANRT-SASGWETFRLWR--VNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAG 141 (506)
Q Consensus 69 ~~~s~~~~~~~~ae~~g~---~~~~anr~-~~~~we~f~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~a~~~~~g 141 (506)
-+||--|||||++...+. .-|--+-+ ...++-.|++.. ..+|.+.+|.. +|||..... +++--+.|.++.|.
T Consensus 8 V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s-~n~~WI~ada~~p~ 86 (153)
T PF07468_consen 8 VAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSS-PNDYWIWADADDPD 86 (153)
T ss_dssp EEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESC-CC--BEEEEESSHH
T ss_pred EEEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCC-CCCcEEEecCCCcc
Confidence 355678999999987322 22434444 445899999888 67999999998 999999854 22337888887665
Q ss_pred -----CCce-EEEEEcC-CCCcceEEecc-CCceeEe
Q 010600 142 -----YSET-FQIVRKD-GDSSRVRLSAS-NGMFIQA 170 (506)
Q Consensus 142 -----~~Et-F~iv~~~-~~~~~v~i~a~-nG~~Lqa 170 (506)
+.+| |+-|+-+ ++...++++.. ||.|.+-
T Consensus 87 ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r 123 (153)
T PF07468_consen 87 EDQSKPSCTLFEPVKVDVKDFNVIALRNMQNGHFCKR 123 (153)
T ss_dssp H-TCSTCGG-EEEEESCCCETTEEEEEETTTTEEEEE
T ss_pred cccCCCCceEEEEEEecCCCccEEEEEecCCceEEEE
Confidence 3667 9987654 23356777775 7888764
No 72
>PLN00196 alpha-amylase; Provisional
Probab=93.16 E-value=0.29 Score=52.25 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccc----cCCCCCCCCc---cchHHHHHHHHHHHHHcCCEEEEec
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIA----NDPTPPKPFV---GGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~----~~~~~~~~~~---~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.+.+..|+++|+++|=||=.+... .++......+ =+..+.|+++|+.|+++||+||+|.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467899999999999997533211 1111100111 1467889999999999999999997
No 73
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=92.87 E-value=1.3 Score=39.35 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=58.7
Q ss_pred HHHHHHHHhCCCCEEEeCcC---cccccCCC--CCCCCccchHHHHHHHHHHHHHcCCEEEEec--CCC-------CCC-
Q 010600 230 DEDFKFLSSNGINAVRIPVG---WWIANDPT--PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL--HAA-------PGS- 294 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~---~~~~~~~~--~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl--H~~-------pg~- 294 (506)
++-++.+++.|+|+|-|-.. -+.+.+.. +..|... .+.|.++|+.|++.||+|++=+ +.. |..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~ 80 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWF 80 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCcee
Confidence 45578899999999999543 12222111 1123333 5889999999999999999833 211 211
Q ss_pred ---CCCCCCCCCCCCCCCCC-----hhhHHHHHHHHHHHHHHh
Q 010600 295 ---QNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARY 329 (506)
Q Consensus 295 ---qng~~~sg~~~g~~~W~-----~~~~~~~~~~w~~lA~ry 329 (506)
.+|....+.....+.|. ..+.+..++.++.+.++|
T Consensus 81 ~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 81 VRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 11211111111222343 456778888889999999
No 74
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.43 E-value=1.4 Score=45.02 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCCCEEEeCcCccc-ccCCCCCCC---------CccchHHHHHHHHHHHHHcCCEEEEec----CCCCCC-
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWI-ANDPTPPKP---------FVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGS- 294 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~-~~~~~~~~~---------~~~~~l~~ld~~v~~a~k~Gi~VILDl----H~~pg~- 294 (506)
++.++.++++|||+|=+-|.... .+-++.-.| .....++-|..+|+.|+++||.|.-=+ -..+.+
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~ 101 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSH 101 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCchhh
Confidence 56788899999999877553210 000111111 111257899999999999999985322 000000
Q ss_pred ---CCCCC----CCCCC------CCCCCCC----hhhHHHHHHHHHHHHHHhcCCCceeEEE--ee-------c------
Q 010600 295 ---QNGNE----HSATR------DGFQEWG----DSNVADTVAVIDFLAARYANRPSLAAIE--LI-------N------ 342 (506)
Q Consensus 295 ---qng~~----~sg~~------~g~~~W~----~~~~~~~~~~w~~lA~ryk~~~~V~g~e--L~-------N------ 342 (506)
+++.+ +.+.. .+...|. ++.++..+++++.|+++|. -..|- +| .. +
T Consensus 102 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIh-lDdy~yp~~~~g~~~~~~~~ 179 (311)
T PF02638_consen 102 ILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIH-LDDYFYPPPSFGYDFPDVAA 179 (311)
T ss_pred hhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEE-ecccccccccCCCCCccHHH
Confidence 11110 11100 0122233 6778888999999999984 22221 22 00 0
Q ss_pred -------CCCCCCCC-------hHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 343 -------EPLAPGVA-------LDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 343 -------EP~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
+|.....+ .+.+..++++++++|+++.|+..+-++
T Consensus 180 y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sis 228 (311)
T PF02638_consen 180 YEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSIS 228 (311)
T ss_pred HHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 11100011 345667899999999999999888776
No 75
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.42 E-value=4.5 Score=45.58 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCEEEe-CcC------cccccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRI-PVG------WWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ 295 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~------~~~~~~~~~----~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~q 295 (506)
+.-+..|+++|+|+|=| |+. .| ..++.. ...| +..+.|+++|+.|.++||+||||+ |..+..
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~w-GY~~~~~~~~~~~~--g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~- 246 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSW-GYQVTGYYAPTSRL--GTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE- 246 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCC-CcCccccccccccc--CCHHHHHHHHHHHHHCCCEEEEEecccccCcch-
Confidence 44458899999999997 552 11 111111 1112 467899999999999999999997 433321
Q ss_pred CCCC---------CCCCCCC-CCCCC--------hhhHHHHHHHHHHHHHHhcCCC-------ceeEEEee---cCCCCC
Q 010600 296 NGNE---------HSATRDG-FQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIELI---NEPLAP 347 (506)
Q Consensus 296 ng~~---------~sg~~~g-~~~W~--------~~~~~~~~~~w~~lA~ryk~~~-------~V~g~eL~---NEP~~~ 347 (506)
++.. +.....+ ...|. ++.++..++..+...+.|.=+. .++=.|-- -.|...
T Consensus 247 ~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~ 326 (639)
T PRK14706 247 SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIH 326 (639)
T ss_pred hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccccccccc
Confidence 1111 0000111 12333 3445555566666666554332 11100100 011110
Q ss_pred -CCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 348 -GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 348 -~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
+.....-..+.+++-.+||+..|+.++|-+
T Consensus 327 gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE 357 (639)
T PRK14706 327 GGRENLEAIAFLKRLNEVTHHMAPGCMMIAE 357 (639)
T ss_pred CCcccHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 111234566889999999999999877775
No 76
>PLN02801 beta-amylase
Probab=92.04 E-value=0.39 Score=51.44 Aligned_cols=60 Identities=25% Similarity=0.644 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEecCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPG 293 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~V--ILDlH~~pg 293 (506)
+..++.||++|+.-|=++| ||-..+...|..| .|...+++++.+++.||++ |+.+|...|
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQY---DWSAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 6789999999999999999 6655555555566 5888999999999999865 778887543
No 77
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=91.98 E-value=1 Score=48.67 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
+--++-.++.|+|++|+ |- ++-|. =|.+-+.|.+.||-|-=|+.-+..- ++.
T Consensus 360 ~~LL~Sv~e~~MN~lRV----WG------GGvYE------sd~FY~lad~lGilVWQD~MFACAl------------YPt 411 (867)
T KOG2230|consen 360 EFLLDSVAEVGMNMLRV----WG------GGVYE------SDYFYQLADSLGILVWQDMMFACAL------------YPT 411 (867)
T ss_pred HHHHHHHHHhCcceEEE----ec------Ccccc------chhHHHHhhhccceehhhhHHHhhc------------ccC
Confidence 44456678999999998 41 12332 3556678999999998888744211 000
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC------C-------CChHHHHHHHHHHH-HHHHhcCCCeEEE
Q 010600 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------G-------VALDTLKSYYKAGY-DAVRKYTSTAYVI 375 (506)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~------~-------~~~~~~~~~~~~~~-~aIR~~~p~~~Vi 375 (506)
.+...+...+-.+.=+.|.+.+|.|+.|---||-... . ...++..-+|++.+ +.....++.++.|
T Consensus 412 -~~eFl~sv~eEV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi 490 (867)
T KOG2230|consen 412 -NDEFLSSVREEVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFI 490 (867)
T ss_pred -cHHHHHHHHHHHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCce
Confidence 0133344445566677899999999999999986531 0 11233444555533 4444556778877
Q ss_pred EeCCCCC--CChhhhhcccCCCCcEEEEEEeeccC
Q 010600 376 MSNRLGP--ADHKELLSFASGLSRVVIDVHYYNLF 408 (506)
Q Consensus 376 v~~~~~~--~~~~~~~~~~~~~~nvv~s~H~Y~~f 408 (506)
++.+-.+ +.+..+..- .+.+|--=|+|+|..+
T Consensus 491 ~SSPsNG~ete~e~~VS~-NP~dn~~GDVHfYdy~ 524 (867)
T KOG2230|consen 491 VSSPSNGKETEPENYVSS-NPQDNQNGDVHFYDYT 524 (867)
T ss_pred ecCCCCCcccCccccccC-CCccccCCceEeeehh
Confidence 7743221 112222221 4566777899999854
No 78
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=91.96 E-value=0.22 Score=52.13 Aligned_cols=60 Identities=22% Similarity=0.551 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEecCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPG 293 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~V--ILDlH~~pg 293 (506)
+..++.+|++|+.-|=++| ||-..+...|..| .+...+++++.+++.||++ |+.+|...|
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~~p~~y---dWs~Y~~l~~~vr~~GLk~~~vmsfH~cGg 80 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGEGPQQY---DWSGYRELFEMVRDAGLKLQVVMSFHQCGG 80 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSS
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEeeecCCC
Confidence 6889999999999999999 6655555545555 6899999999999999976 557787654
No 79
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.39 E-value=1.5 Score=48.39 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=67.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
++-++++|+.|+|+|-..|.|- ..+|.++ .|+=...--|.++|..|++.||+|||-+= |--+.-+++. |-+.
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~Hep~~g-~y~FsG~~DlvkFikl~~~~GLyv~LRiG--PyIcaEw~~G----G~P~ 123 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-LHEPSPG-KYDFSGRYDLVKFIKLIHKAGLYVILRIG--PYICAEWNFG----GLPW 123 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-cccCCCC-cccccchhHHHHHHHHHHHCCeEEEecCC--CeEEecccCC----Ccch
Confidence 7889999999999999999875 5556554 44433344467779999999999999654 2111112222 2222
Q ss_pred CC------------hhhHHHHHHHHHHHHHHh----c-CCCceeEEEeecCCC
Q 010600 310 WG------------DSNVADTVAVIDFLAARY----A-NRPSLAAIELINEPL 345 (506)
Q Consensus 310 W~------------~~~~~~~~~~w~~lA~ry----k-~~~~V~g~eL~NEP~ 345 (506)
|. +....++.++++.|..+. . +-.-|+..++=||=.
T Consensus 124 wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 124 WLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 22 233445556666665532 2 223566689999953
No 80
>PLN02705 beta-amylase
Probab=91.33 E-value=0.48 Score=51.68 Aligned_cols=60 Identities=17% Similarity=0.429 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEecCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPG 293 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~--VILDlH~~pg 293 (506)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||+ |||.+|...|
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKY---VWSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 6789999999999999999 6656565555566 588899999999999987 5678887544
No 81
>PLN00197 beta-amylase; Provisional
Probab=91.31 E-value=1.9 Score=46.74 Aligned_cols=60 Identities=22% Similarity=0.527 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEecCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPG 293 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~V--ILDlH~~pg 293 (506)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||++ |+.+|...|
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Y---dWsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVY---NWGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 6789999999999999999 6656565555566 5888899999999999865 677886543
No 82
>PLN02361 alpha-amylase
Probab=91.14 E-value=0.63 Score=49.30 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCccccc----CCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIAN----DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~----~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
++.++.|+++|+++|=||=.+.... ++..-...++ +..+.|+++|+.|+++||+||+|+
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4668899999999999975432111 1110000111 468899999999999999999998
No 83
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=91.01 E-value=0.98 Score=40.61 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCceEEEEecCCeEEEeecCCCCceEEEeecCCCCCceEEEEEcCCCCcceEEeccCCceeEeccc
Q 010600 108 NETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSASNGMFIQAISE 173 (506)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~EtF~iv~~~~~~~~v~i~a~nG~~Lqa~~~ 173 (506)
++..+.||++.++|+.|+..|.+..+--++.+...-=+=+++.. +...|++++..|+||.+...
T Consensus 6 d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~--~~~~v~L~saYGrYL~as~~ 69 (142)
T PF04601_consen 6 DGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPG--SPNYVRLRSAYGRYLAASDE 69 (142)
T ss_pred CCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecC--CCCEEEEeeccCceEeccCC
Confidence 67789999999999999976444455555554443223345543 34579999999999998744
No 84
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=90.97 E-value=0.65 Score=51.26 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCCEEEeCcCcccccC-----CCCCCCCc--cchHHHHHHHHHHHHHcCCEEEEec
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIAND-----PTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~~~-----~~~~~~~~--~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
+-++.|+++|+|+|=|+=-+..... +......+ =+.++.|+++|+.|+++||+||||+
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999998432221110 00000011 1578999999999999999999997
No 85
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=90.93 E-value=0.64 Score=51.40 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCEEEeCcCccc-----ccCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 010600 231 EDFKFLSSNGINAVRIPVGWWI-----ANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~-----~~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
+.++.|+++|+++|=|+=-+.. ..++......++ +..+.|+++|+.|+++||+||||+
T Consensus 37 ~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 37 QRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999988321211 001110000111 467899999999999999999998
No 86
>PRK03705 glycogen debranching enzyme; Provisional
Probab=90.85 E-value=0.53 Score=53.06 Aligned_cols=57 Identities=25% Similarity=0.469 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCCEEEe-CcCc---------------ccccCCC----CCCCCcc---chHHHHHHHHHHHHHcCCEEEEe
Q 010600 231 EDFKFLSSNGINAVRI-PVGW---------------WIANDPT----PPKPFVG---GSSKVLDNAFDWAEKYGVKVIVD 287 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~~---------------~~~~~~~----~~~~~~~---~~l~~ld~~v~~a~k~Gi~VILD 287 (506)
.-++.|+++|+|+|=| ||.- | ..++. +...|-. ..++.|+++|+.|.++||+||||
T Consensus 183 ~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~yw-GYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 183 VMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYW-GYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred cchHHHHHcCCCEEEecCcccCCCccccccccccccc-CcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 3599999999999987 5521 1 11111 0111211 23678999999999999999999
Q ss_pred c
Q 010600 288 L 288 (506)
Q Consensus 288 l 288 (506)
+
T Consensus 262 v 262 (658)
T PRK03705 262 V 262 (658)
T ss_pred E
Confidence 7
No 87
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=90.84 E-value=0.6 Score=50.68 Aligned_cols=58 Identities=28% Similarity=0.262 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCCEEEeCcCccc-------ccCCCCCC---------CCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 010600 231 EDFKFLSSNGINAVRIPVGWWI-------ANDPTPPK---------PFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~-------~~~~~~~~---------~~~~--~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
+-++.|+++|+++|=|+=.+.. ..++.... ..++ +..+.|+++|+.|+++||+||+|+
T Consensus 26 ~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 26 ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4589999999999999532221 11111110 0111 468899999999999999999998
No 88
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=90.42 E-value=3.9 Score=36.24 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred eeeEeeeeceeEEEEecCCCceEE-ecCCC-CCCcceEEEEeeCCceEEEEec-CCeEEEeecCCCCceEEEeecCCC--
Q 010600 67 QVQFMSTKFQKYIAAESGGGTIVV-ANRTS-ASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAG-- 141 (506)
Q Consensus 67 ~~~~~s~~~~~~~~ae~~g~~~~~-anr~~-~~~we~f~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~a~~~~~g-- 141 (506)
-|.|||- |||||-+...++-+.+ ..-+. ..+--.|++-...++.+.+|.. +|||..+. ..=+.|.++.|.
T Consensus 7 ~V~FKg~-n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s----~~WI~a~s~d~~e~ 81 (139)
T smart00791 7 YVLFKGN-NQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLS----HYWITADANDPDEN 81 (139)
T ss_pred EEEEEcC-CCceEEEEeecccceeEecccccCCcceeEEEEEcCCCcEEEEecCCCceEccC----CCEEEecCCCCccC
Confidence 5899998 9999998876554332 11111 1234467766677899999988 99999886 356788877772
Q ss_pred --CCceEEEEEcCCCCcceEEec-cCCceeEe
Q 010600 142 --YSETFQIVRKDGDSSRVRLSA-SNGMFIQA 170 (506)
Q Consensus 142 --~~EtF~iv~~~~~~~~v~i~a-~nG~~Lqa 170 (506)
.-+-|.-+.-++ +.++++- .||.|+.-
T Consensus 82 ~sscTLF~Pv~~d~--~~i~lr~vq~~~~~~r 111 (139)
T smart00791 82 KSACTLFRPLYVEM--KKIRLLNVQLGHYTKR 111 (139)
T ss_pred CCcccEEeEEeccC--ceEEEEEecCCceEEe
Confidence 334577666543 3577766 37777753
No 89
>PRK09505 malS alpha-amylase; Reviewed
Probab=90.37 E-value=0.79 Score=51.84 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCEEEeCcCcccc-------------------cCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIA-------------------NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~-------------------~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
+-++.|+++|+|+|=|.=-+... ..+......++ +..+.|+++|+.|+++||+||||+
T Consensus 234 ~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 234 EKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred HhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45889999999999984211110 00100001111 468999999999999999999997
No 90
>PLN02161 beta-amylase
Probab=90.33 E-value=5 Score=43.26 Aligned_cols=130 Identities=15% Similarity=0.273 Sum_probs=81.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEecCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 307 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~V--ILDlH~~pg~qng~~~sg~~~g~ 307 (506)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||++ |+.+|...|.-. +..+ ..-
T Consensus 120 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvG--d~~~--IpL 191 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEV-WWGIVERFSPLEF---KWSLYEELFRLISEAGLKLHVALCFHSNMHLFG--GKGG--ISL 191 (531)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCCCCC--CccC--ccC
Confidence 6789999999999999999 6656565555566 5888999999999999865 667787644211 1111 122
Q ss_pred CCCChhhHHHHHHHHHHHHH----HhcCC-----CceeEEEeecCCCCCCC-ChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 308 QEWGDSNVADTVAVIDFLAA----RYANR-----PSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~----ryk~~-----~~V~g~eL~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
+.|- |+...+ -|+|. +.-+.+-.=|+|...+. +.+.+.+|++..-+.....-.+.+.-|.
T Consensus 192 P~WV----------~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I~eI~ 261 (531)
T PLN02161 192 PLWI----------REIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIGNVIEEIS 261 (531)
T ss_pred CHHH----------HhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 3331 111111 13332 23345556688986554 4477888888888777775445444444
No 91
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=90.26 E-value=0.35 Score=46.16 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=59.5
Q ss_pred cccCceeeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEecCCeEEEeecCCCCceEEEeecCCC
Q 010600 62 LLDGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAG 141 (506)
Q Consensus 62 ~~~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g 141 (506)
++| ++|+||| -.||||+-++-| .||+...++|+=|+|..+.- ++.++|-++|++|..+... +-.-+|.++.-.
T Consensus 91 i~d-srIaLKs-GyGKYlsinsdg--lvvg~qeAvG~~EQw~~vFq-~~r~a~~as~s~~~~~~e~--~d~~va~kt~t~ 163 (246)
T KOG3962|consen 91 ISD-SRIALKS-GYGKYLSINSDG--LVVGRQEAVGSREQWEPVFQ-EGRMALLASNSCFIRCNEA--GDAEVASKTATE 163 (246)
T ss_pred ccC-ceEEecc-cccceeeecCCc--cEEEehhhcCcHhhchhhhh-ccceEEeeccceeEEechh--hchhhhcccCCC
Confidence 456 8999998 499999999877 89999999999999997775 5557777779999999764 445677776544
Q ss_pred CC
Q 010600 142 YS 143 (506)
Q Consensus 142 ~~ 143 (506)
+.
T Consensus 164 ~~ 165 (246)
T KOG3962|consen 164 EP 165 (246)
T ss_pred Cc
Confidence 43
No 92
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=90.19 E-value=2.3 Score=35.69 Aligned_cols=71 Identities=10% Similarity=0.268 Sum_probs=52.7
Q ss_pred eEEEEeeC--CceEEEEec-CCeEEEeecCC--CCceEEEeecCCCCCceEEEEEcCCCCcceEEecc-CCceeEeccc
Q 010600 101 TFRLWRVN--ETFYNFRVN-NKQFIGLENQG--QGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSAS-NGMFIQAISE 173 (506)
Q Consensus 101 ~f~~~~~~--~~~~~~~~~-~~~~v~~~~~~--~~~~~~a~~~~~g~~EtF~iv~~~~~~~~v~i~a~-nG~~Lqa~~~ 173 (506)
+|++..++ ++.|.|+.. .|+++.+.+++ .|..|+.-...-.+...|+|++.+++ .++|... +|+.|.+.++
T Consensus 4 ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g--~y~I~n~~s~~~Ldv~~~ 80 (105)
T PF14200_consen 4 QWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDG--YYRIRNKNSGKVLDVAGG 80 (105)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTS--EEEEEETSTTEEEEEGGG
T ss_pred EEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCC--eEEEEECCCCcEEEECCC
Confidence 56677765 899999987 99999998631 13356666555588999999998865 4777775 4888888754
No 93
>PLN02803 beta-amylase
Probab=89.97 E-value=4.7 Score=43.64 Aligned_cols=130 Identities=17% Similarity=0.407 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEecCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 307 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~V--ILDlH~~pg~qng~~~sg~~~g~ 307 (506)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||++ |+.+|...|.- | +.. ...-
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNV-G-D~~--~IpL 181 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKY---NWEGYAELVQMVQKHGLKLQVVMSFHQCGGNV-G-DSC--SIPL 181 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCCCC-C-Ccc--cccC
Confidence 6789999999999999999 6656665555566 5888899999999999875 66778764421 1 111 1112
Q ss_pred CCCChhhHHHHHHHHHHHHH----HhcCC-----CceeEEEeecCCCCCCC-ChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 308 QEWGDSNVADTVAVIDFLAA----RYANR-----PSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~----ryk~~-----~~V~g~eL~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
+.| +++...+ -|+|. ..-+.+-.=|+|...+- +.+.+.+|++..-+.....-.+.++-|.
T Consensus 182 P~W----------V~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~ 251 (548)
T PLN02803 182 PPW----------VLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQ 251 (548)
T ss_pred CHH----------HHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 223 1111111 13332 23334555588876543 4477888888877777765445554444
No 94
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=89.96 E-value=0.84 Score=50.36 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCEEEeCcCcccc-----cCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIA-----NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~-----~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
+-++.|+++|+|+|=|+=-+... .++......++ +..+.|+++|+.|+++||+||||+
T Consensus 32 ~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 32 SKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45899999999999984212110 01110001111 467999999999999999999997
No 95
>PLN02905 beta-amylase
Probab=88.85 E-value=1.1 Score=49.28 Aligned_cols=60 Identities=17% Similarity=0.486 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEecCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPG 293 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~V--ILDlH~~pg 293 (506)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||++ |+.+|...|
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Y---dWsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEY---NWNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 6789999999999999999 6656665555566 5888999999999999865 677887544
No 96
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=88.55 E-value=10 Score=32.99 Aligned_cols=96 Identities=14% Similarity=0.165 Sum_probs=67.4
Q ss_pred eeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEec-CCeEEEeecCCCCceEEEeecCCCCCceE
Q 010600 68 VQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAGYSETF 146 (506)
Q Consensus 68 ~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~a~~~~~g~~EtF 146 (506)
++|=+.+ |+||.-...| .|-+.++.-+....|++..++.+.+.||.. .++|+|.+. .+.|.+. ..+..-+.|
T Consensus 3 ~~Ly~~~-~~~L~i~~~g--~V~gt~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~---~G~ly~~-~~~~~~C~F 75 (122)
T PF00167_consen 3 VQLYCRT-GYFLQINPNG--TVDGTGDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNK---CGRLYGS-KNFNKDCVF 75 (122)
T ss_dssp EEEEETT-SEEEEEETTS--BEEEESSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBT---TSBEEEE-SSBTGGGEE
T ss_pred EEEEECC-CeEEEECCCC--eEeCCCCcCcceeEEEEEeccceEEEEEEecceEEEEECC---CCeEccc-cccCCCceE
Confidence 4555544 9999887655 677778777888999999999899999998 899999986 4567775 455668888
Q ss_pred EEEEcCCCCcceEEecc--CCceeEec
Q 010600 147 QIVRKDGDSSRVRLSAS--NGMFIQAI 171 (506)
Q Consensus 147 ~iv~~~~~~~~v~i~a~--nG~~Lqa~ 171 (506)
+-.-..+.. ....... .+.||-.+
T Consensus 76 ~e~~~~n~y-~~~~s~~~~~~~yla~~ 101 (122)
T PF00167_consen 76 REELLENGY-NTYESAKYGRGWYLAFN 101 (122)
T ss_dssp EEEEETTSE-EEEEESTTGTTEBCEBC
T ss_pred EEEEccCCE-EEEEeccCCccEEEEEC
Confidence 744333332 2223332 35566554
No 97
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=87.95 E-value=1.1 Score=54.20 Aligned_cols=64 Identities=22% Similarity=0.414 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCCEEEe-CcCcccc--------------cCCC---CCC-CCccchHHHHHHHHHHHHHcCCEEEEec--
Q 010600 230 DEDFKFLSSNGINAVRI-PVGWWIA--------------NDPT---PPK-PFVGGSSKVLDNAFDWAEKYGVKVIVDL-- 288 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~~~~--------------~~~~---~~~-~~~~~~l~~ld~~v~~a~k~Gi~VILDl-- 288 (506)
++.++.|+++|+|+|=| ||.-..- .++. .++ .|-.+..+.|+++|+.|.++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 46788999999999987 5531100 1110 011 1211267889999999999999999997
Q ss_pred -CCCCC
Q 010600 289 -HAAPG 293 (506)
Q Consensus 289 -H~~pg 293 (506)
|...+
T Consensus 270 NHt~~~ 275 (1221)
T PRK14510 270 NHTGES 275 (1221)
T ss_pred ccccCC
Confidence 55443
No 98
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=87.71 E-value=11 Score=36.76 Aligned_cols=118 Identities=11% Similarity=0.244 Sum_probs=67.5
Q ss_pred ccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC----hhhHHHHHHHHHHHHHHhcCCCceeEE
Q 010600 263 VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG----DSNVADTVAVIDFLAARYANRPSLAAI 338 (506)
Q Consensus 263 ~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~----~~~~~~~~~~w~~lA~ryk~~~~V~g~ 338 (506)
.+..++.+.++|..|++.||++|= |- |. .-++ +...++|++-++..++--......+++
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQ-LA---GY-------------DVYYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAv 153 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQ-LA---GY-------------DVYYEEADEETRQRFIEGLKWAVELAARAQVMLAV 153 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEe-ec---cc-------------eeeeccCCHHHHHHHHHHHHHHHHHHHhhccEEEe
Confidence 456899999999999999999973 21 11 1111 366778877666655444444677899
Q ss_pred EeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCC---ChhhhhcccCCCCcEEEEEEeeccC
Q 010600 339 ELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPA---DHKELLSFASGLSRVVIDVHYYNLF 408 (506)
Q Consensus 339 eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~---~~~~~~~~~~~~~nvv~s~H~Y~~f 408 (506)
|+|.-|... +...|. ...+.+++-.+.+.++ .++. +..-...+.. ...-+..+|.-..|
T Consensus 154 EiMDtpfm~--sIsk~~-------~~~~~I~sP~f~vYPD-iGNlsaw~ndv~~El~l-G~~~I~aiHlKDTy 215 (287)
T COG3623 154 EIMDTPFMN--SISKWL-------KYDKYINSPWFTVYPD-IGNLSAWNNDVQSELQL-GIDKIVAIHLKDTY 215 (287)
T ss_pred eecccHHHH--HHHHHH-------HHHHHhCCCcEEecCC-cccHhhhhhhHHHHHHc-CcCceEEEEecccc
Confidence 999999742 223333 3445555444444442 2210 0011112212 23456788976653
No 99
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=86.58 E-value=7.3 Score=41.30 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH-~~pg~qng~~~sg~ 303 (506)
-++++.++.+++.|+|.|=|.| ..+.+..- ... .....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 112 ~lt~e~l~~l~~~GvnrislGv--QS~~d~~L-~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg---------- 178 (400)
T PRK07379 112 TFDLEQLQGYRSLGVNRVSLGV--QAFQDELL-ALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPH---------- 178 (400)
T ss_pred cCCHHHHHHHHHCCCCEEEEEc--ccCCHHHH-HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 3689999999999999665544 33321100 000 112567788899999999998 778975 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+-++.+.+ . +...|-.+.|.-||..+ ..+.+...+.++.+.+..++.+=.+
T Consensus 179 ---------qt~e~~~~tl~~~~~-l-~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 247 (400)
T PRK07379 179 ---------QTLEDWQASLEAAIA-L-NPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEH 247 (400)
T ss_pred ---------CCHHHHHHHHHHHHc-C-CCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCce
Confidence 223444455555443 2 33466667888888742 1244566778888888888887665
Q ss_pred E
Q 010600 373 Y 373 (506)
Q Consensus 373 ~ 373 (506)
+
T Consensus 248 y 248 (400)
T PRK07379 248 Y 248 (400)
T ss_pred e
Confidence 4
No 100
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=86.46 E-value=1.6 Score=48.61 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=41.5
Q ss_pred CHHHHHHHHhCCCCEEEe-CcCccc-----ccCCC----CCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 010600 229 TDEDFKFLSSNGINAVRI-PVGWWI-----ANDPT----PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRI-Pv~~~~-----~~~~~----~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.++-+..+|++|+++|=| ||.-.. ..++. |...| +.-+-|.++|+.|.++||.||||.
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sry--GtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRY--GTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccC--CCHHHHHHHHHHHHHcCCEEEEEe
Confidence 466788899999999997 553110 11221 11222 467889999999999999999997
No 101
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=86.27 E-value=9.4 Score=39.76 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=78.2
Q ss_pred ccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCC
Q 010600 226 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 302 (506)
Q Consensus 226 ~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH-~~pg~qng~~~sg 302 (506)
..++++.++.+++.|+|.|=|++ ..+.+..- ... .....+.+.++++.++++|+. |-+|+- +.||
T Consensus 99 ~~lt~e~l~~lk~~G~nrisiGv--QS~~d~vL-~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg--------- 166 (353)
T PRK05904 99 ELITQSQINLLKKNKVNRISLGV--QSMNNNIL-KQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI--------- 166 (353)
T ss_pred CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC---------
Confidence 34789999999999999777665 32211100 000 113567788899999999987 888865 3343
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC------CCChHHHHHHHHHHHHHHHhcCCCeEEE
Q 010600 303 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------GVALDTLKSYYKAGYDAVRKYTSTAYVI 375 (506)
Q Consensus 303 ~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p~~~Vi 375 (506)
.+.+.+.+.++.+.+ .+ -+.|..+.|.=||..+ ..+.+.-.+.++.+.+.+++.+-.++=+
T Consensus 167 ----------qt~e~~~~tl~~~~~-l~-p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 233 (353)
T PRK05904 167 ----------LKLKDLDEVFNFILK-HK-INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEV 233 (353)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEec
Confidence 234455555555543 22 2345456666666521 1344566677888888888888776543
No 102
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=86.04 E-value=5.6 Score=41.29 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=74.8
Q ss_pred CHHHHHHHHhCCCCEEEeCcC----cccccCCCCCCCCc----cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVG----WWIANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 300 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~----~~~~~~~~~~~~~~----~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~ 300 (506)
.++=++.+|++|+.-|=|--- +-++ |+...+|. ...-+.+.++++.|+|+||++.|=+|...-. +....
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW--~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~-~~~~~ 169 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLW--PSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWH-HPDYP 169 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS----TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCC-CTTTT
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccC--CCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhc-CcccC
Confidence 455577789999998876321 1111 11111232 2356889999999999999999977754211 10000
Q ss_pred CCCCC---C----CCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeE
Q 010600 301 SATRD---G----FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAY 373 (506)
Q Consensus 301 sg~~~---g----~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (506)
..... . ...|.....+.+..-++.|.++| .+.++=||...... .+.+.. .+.++.||+..|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~-----~~~~~~--~~~~~~i~~~qp~~i 240 (346)
T PF01120_consen 170 PDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDP-----DEDWDS--AELYNWIRKLQPDVI 240 (346)
T ss_dssp SSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCC-----CTHHHH--HHHHHHHHHHSTTSE
T ss_pred CCccCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCcc-----ccccCH--HHHHHHHHHhCCeEE
Confidence 00000 0 00000011225556777888899 56666688776542 123332 889999999999775
Q ss_pred EE
Q 010600 374 VI 375 (506)
Q Consensus 374 Vi 375 (506)
|.
T Consensus 241 i~ 242 (346)
T PF01120_consen 241 IN 242 (346)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 103
>PLN02784 alpha-amylase
Probab=85.71 E-value=2.3 Score=48.79 Aligned_cols=59 Identities=24% Similarity=0.190 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccc----cCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIA----NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~----~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.+.++.|+++||++|=||=.+... .++......+. +..+.|.++|+.|+++||+||+|+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 566899999999999997543211 11111000111 468899999999999999999997
No 104
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=85.38 E-value=7.2 Score=41.76 Aligned_cols=123 Identities=22% Similarity=0.261 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEE-EecC-CCCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVI-VDLH-AAPGSQNGNEHSATR 304 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VI-LDlH-~~pg~qng~~~sg~~ 304 (506)
.++++.++.++++|+|.|-|.+ ..+.+..-..--.....+.+.++++.++++|+.+| +|+- +.|+
T Consensus 138 ~lt~e~l~~l~~~G~~rvslGv--QS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~----------- 204 (430)
T PRK08208 138 TTTAEKLALLAARGVNRLSIGV--QSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPG----------- 204 (430)
T ss_pred cCCHHHHHHHHHcCCCEEEEec--ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC-----------
Confidence 4789999999999999777765 32211100000011256778899999999999854 7864 3332
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCC-----CChHHHHHHHHHHHHHHHhcCCCe
Q 010600 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-----VALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~-----~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+.++.+.+ . +-+.|-.+.|.=||..+- .+.+.....++.+.+...+.+=.+
T Consensus 205 --------qt~e~~~~~l~~~~~-l-~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~ 267 (430)
T PRK08208 205 --------QTHASWMESLDQALV-Y-RPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ 267 (430)
T ss_pred --------CCHHHHHHHHHHHHh-C-CCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 234455555555543 2 223555566777776421 133566677888888887776544
No 105
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=85.29 E-value=52 Score=34.49 Aligned_cols=230 Identities=18% Similarity=0.185 Sum_probs=112.9
Q ss_pred hCCCCEEEeCcCcccccCC-----CCCCCC-------ccchHHHHHHHHHHHHH---cCCEEEEecCCCCCCC--CCCC-
Q 010600 238 SNGINAVRIPVGWWIANDP-----TPPKPF-------VGGSSKVLDNAFDWAEK---YGVKVIVDLHAAPGSQ--NGNE- 299 (506)
Q Consensus 238 ~~G~N~VRIPv~~~~~~~~-----~~~~~~-------~~~~l~~ld~~v~~a~k---~Gi~VILDlH~~pg~q--ng~~- 299 (506)
.+|+|..|+|+.-=.+... +.++.| .++.++.---.|..|.+ .+|+..-....+||.- +|.-
T Consensus 135 Gl~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsPWsaPgWlKttg~m~ 214 (518)
T KOG2566|consen 135 GLGYNIGRVPIASCDFSTREYSYDDVPDDFQLKNFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASPWSAPGWLKTTGRMN 214 (518)
T ss_pred CccceeeeeeecccccccceeeccCCcccccccccCCchhhheeecHHHHHHHHhcCCCceEEecCCCCCceeeeccccc
Confidence 4688999999852222110 111111 11222222224444444 4578777777777641 1100
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCC-ceeEEEeecCCCCCC----------CChHHHHHHHHHHH-HHHHh
Q 010600 300 HSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAPG----------VALDTLKSYYKAGY-DAVRK 367 (506)
Q Consensus 300 ~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~-~V~g~eL~NEP~~~~----------~~~~~~~~~~~~~~-~aIR~ 367 (506)
-.|...|.+. +.+.+.+.++.-.+-+.|..+. ...|.-.-|||.... .+.+.-+++.+.-+ -++.+
T Consensus 215 G~G~l~g~~~--d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~ 292 (518)
T KOG2566|consen 215 GKGALLGDPG--DIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALAS 292 (518)
T ss_pred ccccccCCCC--chhHHHHHHHHHHHHHHHHhcCceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhc
Confidence 0111111110 2344555555555556676665 677888899998632 24556666665544 33333
Q ss_pred c--CCCeEEEEeCCCCCCChhhh----hcccC-CCCcEEEEEEeeccCCCCCCCCchhchHHHHHHhhhhhHHHHHhcCC
Q 010600 368 Y--TSTAYVIMSNRLGPADHKEL----LSFAS-GLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNG 440 (506)
Q Consensus 368 ~--~p~~~Viv~~~~~~~~~~~~----~~~~~-~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g 440 (506)
. ..+..|+|-+.-. .+...| +..+. ..----+.+|.|.-|.... .+++.. .+..
T Consensus 293 s~~~knvkllilDD~R-g~LP~WadtvlnDpeAakYv~GIaVHwY~df~~pa------~~L~eT------------h~~h 353 (518)
T KOG2566|consen 293 SKTTKNVKLLILDDQR-GLLPHWADTVLNDPEAAKYVHGIAVHWYQDFLEPA------KHLDET------------HRKH 353 (518)
T ss_pred CCcCCceEEEEecCCc-cCCCccchhhccChhhhhhccceEEEeeccccChh------hhhhhH------------HhhC
Confidence 2 2344455432111 111122 11111 1112348999998654211 111111 1122
Q ss_pred Cc--EEEEecCCCCC----CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEecccC
Q 010600 441 PL--TFVGEWTCEWN----VKDASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 488 (506)
Q Consensus 441 p~--v~vGEfg~~~~----~~~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~~ 488 (506)
|- +|-.|-.+.+. +.-.+-+...+|..+.++-+...-.||+=|.+--+
T Consensus 354 P~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~vtGWtdwNl~Ld 407 (518)
T KOG2566|consen 354 PNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNHVTGWTDWNLILD 407 (518)
T ss_pred CCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhhccceeeeeeEec
Confidence 32 44456543221 22344556678888888888888889999977553
No 106
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=85.24 E-value=2.6 Score=48.41 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCCEEEe-CcCccc------ccCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 010600 230 DEDFKFLSSNGINAVRI-PVGWWI------ANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~~~------~~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.+.+..|+++|+++|=| |+ +.. ..+.......++ +..+.|+++++.|+++||+||||+
T Consensus 19 ~~~L~YL~~LGv~~V~lsPi-~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 19 AALLPYLKSLGVSHLYLSPI-LTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHhhHHHHHcCCCEEEeCcC-ccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46789999999999987 33 110 111111111111 468999999999999999999997
No 107
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=84.94 E-value=2.1 Score=46.20 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCCEEEe-CcCcc----cccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 231 EDFKFLSSNGINAVRI-PVGWW----IANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRI-Pv~~~----~~~~~~~~~~~--~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+-++.|+++|+++|=| |+... ...+....... .-+.++.++++++.|+++||+||+|+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 6789999999999977 33221 01111111111 126899999999999999999999993
No 108
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=84.76 E-value=12 Score=39.06 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecCC-CCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH~-~pg~qng~~~sg~ 303 (506)
.++++.++.+++.|+|.|-|.| ..+.+..- ... .....+.+.++++.+++.|+. |-+|+-. .||
T Consensus 100 ~~~~~~l~~l~~~G~nrislGv--QS~~~~~L-~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg---------- 166 (370)
T PRK06294 100 NLSESYIRALALTGINRISIGV--QTFDDPLL-KLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPT---------- 166 (370)
T ss_pred CCCHHHHHHHHHCCCCEEEEcc--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 3689999999999999776655 32221100 000 112466778899999999996 8888752 232
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
...+.+.+.++.+.+ + +-+.|-.|.|.=||..+ ..+.+.....++.+.+.+.+.+=.+
T Consensus 167 ---------qt~~~~~~~l~~~~~-l-~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 235 (370)
T PRK06294 167 ---------QSLSDFIVDLHQAIT-L-PITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTR 235 (370)
T ss_pred ---------CCHHHHHHHHHHHHc-c-CCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCe
Confidence 234455555555553 2 23456668888888631 1234566778888888888877655
Q ss_pred EE
Q 010600 373 YV 374 (506)
Q Consensus 373 ~V 374 (506)
+=
T Consensus 236 ye 237 (370)
T PRK06294 236 YE 237 (370)
T ss_pred ee
Confidence 43
No 109
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=84.24 E-value=35 Score=34.65 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCCEEEeCcC----cccccC--CC------------CCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVG----WWIAND--PT------------PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~----~~~~~~--~~------------~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
++.++.|+..++|.+-+-+. |-.-.. |. +.+.| .-+.+.++++.|+++||.||..+-.
T Consensus 19 k~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~y---T~~di~elv~yA~~rgI~viPEiD~- 94 (303)
T cd02742 19 KRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFY---TYAQLKDIIEYAAARGIEVIPEIDM- 94 (303)
T ss_pred HHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeE---CHHHHHHHHHHHHHcCCEEEEeccc-
Confidence 45577789999999988765 211111 10 00112 4688999999999999999997742
Q ss_pred CCCCCC------------CCCCCCCC--CCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHH
Q 010600 292 PGSQNG------------NEHSATRD--GFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKS 356 (506)
Q Consensus 292 pg~qng------------~~~sg~~~--g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~ 356 (506)
||.... ...+.... +...-. +...+-..++++.+++-|...---+|-| |........+.+..
T Consensus 95 PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgD---E~~~~~~~~~l~~~ 171 (303)
T cd02742 95 PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGD---EAHFKQDRKHLMSQ 171 (303)
T ss_pred hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecce---ecCCCCCHHHHHHH
Confidence 221100 00000000 000001 4555666688888888885433234544 33211123456788
Q ss_pred HHHHHHHHHHhcCC
Q 010600 357 YYKAGYDAVRKYTS 370 (506)
Q Consensus 357 ~~~~~~~aIR~~~p 370 (506)
|.+++.+.|++.+.
T Consensus 172 f~~~~~~~v~~~g~ 185 (303)
T cd02742 172 FIQRVLDIVKKKGK 185 (303)
T ss_pred HHHHHHHHHHHcCC
Confidence 88999999998874
No 110
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=84.24 E-value=15 Score=38.38 Aligned_cols=123 Identities=20% Similarity=0.105 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecCC-CCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH~-~pg~qng~~~sg~ 303 (506)
.++++.++.++++|+|.|-|++ ..+.+. --..+ .....+.+.++++.+++.|+. |.+|+-. .||
T Consensus 105 ~i~~e~l~~l~~~G~~rvslGv--QS~~~~-~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPg---------- 171 (375)
T PRK05628 105 STSPEFFAALRAAGFTRVSLGM--QSAAPH-VLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPG---------- 171 (375)
T ss_pred CCCHHHHHHHHHcCCCEEEEec--ccCCHH-HHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCC----------
Confidence 4789999999999999777766 222111 00001 112567788899999999998 8899753 343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+.++.+.+ ++ -..|..|.|.=||..+ ..+.+...+.++.+.+..++.+-.+
T Consensus 172 ---------qt~~~~~~tl~~~~~-l~-~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 240 (375)
T PRK05628 172 ---------ESDDDWRASLDAALE-AG-VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW 240 (375)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Confidence 234555555555554 22 2344456676677532 1234556777888888888877555
Q ss_pred E
Q 010600 373 Y 373 (506)
Q Consensus 373 ~ 373 (506)
+
T Consensus 241 y 241 (375)
T PRK05628 241 Y 241 (375)
T ss_pred e
Confidence 4
No 111
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=84.16 E-value=8.3 Score=41.56 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=74.8
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH-~~pg~qng~~~sg~ 303 (506)
.+|++.++.+++.|+|.|=|.+ ..+. +.--... .....+.+.++++.+++.|+. |-+|+- ..|+
T Consensus 149 ~lt~e~l~~L~~~G~~rvsiGv--QS~~-~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg---------- 215 (453)
T PRK13347 149 TVTAEMLQALAALGFNRASFGV--QDFD-PQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPH---------- 215 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECC--CCCC-HHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC----------
Confidence 4789999999999999666654 3221 1000001 113577888999999999996 778874 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+.++.+.+ ++ -..|..|.+...|... -.+.+...+.++.+.+.+.+.+=.+
T Consensus 216 ---------qt~e~~~~tl~~~~~-l~-p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 216 ---------QTVESFRETLDKVIA-LS-PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE
Confidence 234556666666654 22 2244445555555421 1234566678888888888877544
No 112
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=83.47 E-value=3.5 Score=47.73 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCccc------ccCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWI------ANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~------~~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.+-+..|+++|+|+|=|+=-+.. ..+.......++ +..+.|+++++.|+++||+||+|+=
T Consensus 23 ~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 23 AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 46789999999999988321111 011111111111 4678999999999999999999983
No 113
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=83.47 E-value=15 Score=38.41 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecCC-CCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH~-~pg~qng~~~sg~ 303 (506)
.+|++.++.+++.|+|.|-|.+ ..+.+..- ... .....+.+.++++.++++|+. |-+|+-. .||
T Consensus 96 ~~t~e~l~~l~~~G~~rvsiGv--qS~~d~~L-~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg---------- 162 (374)
T PRK05799 96 TFTEEKLKILKSMGVNRLSIGL--QAWQNSLL-KYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN---------- 162 (374)
T ss_pred cCCHHHHHHHHHcCCCEEEEEC--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 4789999999999999666555 33321100 000 112567788899999999996 6688653 233
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+.++.+.+ .+ -+.|-.|.|.-+|..+ ..+.+.....++.+.+...+.+=.+
T Consensus 163 ---------qt~e~~~~~l~~~~~-l~-~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ 231 (374)
T PRK05799 163 ---------QTLEDWKETLEKVVE-LN-PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQ 231 (374)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcE
Confidence 334566666666654 22 2345456676677632 1234556677778888888877555
Q ss_pred E
Q 010600 373 Y 373 (506)
Q Consensus 373 ~ 373 (506)
+
T Consensus 232 y 232 (374)
T PRK05799 232 Y 232 (374)
T ss_pred E
Confidence 3
No 114
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=83.45 E-value=11 Score=39.44 Aligned_cols=123 Identities=24% Similarity=0.246 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH-~~pg~qng~~~sg~ 303 (506)
.++++.++.+++.|+|.|-|.+ ..+. +..-... .....+.+.++++.++++|+. |.+|+- +.||
T Consensus 97 ~l~~e~l~~l~~~G~~rvsiGv--qS~~-~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg---------- 163 (377)
T PRK08599 97 DLTKEKLQVLKDSGVNRISLGV--QTFN-DELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPG---------- 163 (377)
T ss_pred CCCHHHHHHHHHcCCCEEEEec--ccCC-HHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCC----------
Confidence 4689999999999999777665 2221 1000000 123567888999999999987 567774 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+.++.+.+ ++ -+.|..+.|.-||..+ ..+.+...+.++.+.+.+++.+=.+
T Consensus 164 ---------qt~~~~~~~l~~~~~-l~-~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ 232 (377)
T PRK08599 164 ---------QTIEDFKESLAKALA-LD-IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQ 232 (377)
T ss_pred ---------CCHHHHHHHHHHHHc-cC-CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcE
Confidence 233455555555543 22 3355557777777532 0234556677888888888877554
Q ss_pred E
Q 010600 373 Y 373 (506)
Q Consensus 373 ~ 373 (506)
+
T Consensus 233 ~ 233 (377)
T PRK08599 233 Y 233 (377)
T ss_pred e
Confidence 3
No 115
>PRK05660 HemN family oxidoreductase; Provisional
Probab=83.23 E-value=13 Score=39.07 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=75.3
Q ss_pred ccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEE-EEecCCC-CCCCCCCCCCC
Q 010600 226 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKV-IVDLHAA-PGSQNGNEHSA 302 (506)
Q Consensus 226 ~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~V-ILDlH~~-pg~qng~~~sg 302 (506)
..++++.++.++++|+|.|-| +-..+.+.. -... .....+...++++.+++.|+.. -+|+-.. |+
T Consensus 103 ~~l~~e~l~~Lk~~Gv~risi--GvqS~~~~~-L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg--------- 170 (378)
T PRK05660 103 GTVEADRFVGYQRAGVNRISI--GVQSFSEEK-LKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD--------- 170 (378)
T ss_pred CcCCHHHHHHHHHcCCCEEEe--ccCcCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC---------
Confidence 347899999999999995555 433322110 0000 1135677888899999999975 4887532 32
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCeE
Q 010600 303 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (506)
Q Consensus 303 ~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (506)
.+.+.+.+.++.+.+ + +-+.|..|.|.=||..+ -.+.+.-...|+.+.+..++.+=.++
T Consensus 171 ----------qt~~~~~~~l~~~~~-l-~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 236 (378)
T PRK05660 171 ----------QSLEEALDDLRQAIA-L-NPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQY 236 (378)
T ss_pred ----------CCHHHHHHHHHHHHh-c-CCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEe
Confidence 234556666666554 2 23455556666666521 12334556778888888888775554
No 116
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=81.81 E-value=2.1 Score=47.90 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=41.1
Q ss_pred CCHHHHHHHHhCCCCEEEe-CcCcc-cc-----cCC----CCCCCCc----cchHHHHHHHHHHHHHcCCEEEEec
Q 010600 228 ITDEDFKFLSSNGINAVRI-PVGWW-IA-----NDP----TPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRI-Pv~~~-~~-----~~~----~~~~~~~----~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
++|+++..||.+|+|+|-| |+.-. .. ..+ .|...|- ......|+++|+.|.+.||-|+||+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 4678899999999999997 43210 00 000 0001110 2237789999999999999999998
No 117
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=81.69 E-value=21 Score=37.13 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecCC-CCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH~-~pg~qng~~~sg~ 303 (506)
.+|++.++.++++|+|.|-|.+ ..+.+. --... .....+.+.++++.+++.|+. |-+|+-. .|+
T Consensus 97 ~lt~e~l~~l~~~Gv~risiGv--qS~~~~-~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 163 (360)
T TIGR00539 97 LITAEWCKGLKGAGINRLSLGV--QSFRDD-KLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL---------- 163 (360)
T ss_pred CCCHHHHHHHHHcCCCEEEEec--ccCChH-HHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC----------
Confidence 4789999999999999666655 322111 00001 123577888899999999995 7788763 232
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+.++.+.+ + +-+.+..+.+.=||..+ ..+.+...+.+..+.+.+++.+=.+
T Consensus 164 ---------qt~~~~~~~l~~~~~-l-~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 228 (360)
T TIGR00539 164 ---------QTLNSLKEELKLAKE-L-PINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQ 228 (360)
T ss_pred ---------CCHHHHHHHHHHHHc-c-CCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCce
Confidence 334555556665554 2 22345445666666532 1234556667777777777765443
No 118
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=80.92 E-value=14 Score=39.78 Aligned_cols=122 Identities=12% Similarity=0.073 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCC-EEEEecCC-CCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGV-KVIVDLHA-APGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi-~VILDlH~-~pg~qng~~~sg~ 303 (506)
.+|++.++.|+++|+|.|-|.+- .+. +..-... .....+.+.++++.++++|+ .|-+|+-. .||
T Consensus 148 ~lt~e~l~~l~~aG~~risiGvq--S~~-~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (453)
T PRK09249 148 ELDLEMLDALRELGFNRLSLGVQ--DFD-PEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK---------- 214 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECCC--CCC-HHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC----------
Confidence 47899999999999998887662 221 1000000 11356778889999999999 78888763 333
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC----------CCCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+.++.+.+ . +-..|-.+.|..+|.. .-.+.+...+.+..+.+..++.+=.+
T Consensus 215 ---------qt~e~~~~~l~~~~~-l-~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 282 (453)
T PRK09249 215 ---------QTPESFARTLEKVLE-L-RPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY 282 (453)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 234455555555554 1 2234444555555542 01245667778888888888776444
No 119
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=80.67 E-value=20 Score=38.27 Aligned_cols=122 Identities=22% Similarity=0.230 Sum_probs=79.5
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCC-EEEEecC-CCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGV-KVIVDLH-AAPGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi-~VILDlH-~~pg~qng~~~sg~ 303 (506)
.++.+-|+.+++.|+| ||.++-+.+-+..- ... .....+....+++.+++.|+ .|-+||- +.|+
T Consensus 134 ~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~l-k~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~---------- 200 (416)
T COG0635 134 TVEAEKFKALKEAGVN--RISLGVQSFNDEVL-KALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPG---------- 200 (416)
T ss_pred CCCHHHHHHHHHcCCC--EEEeccccCCHHHH-HHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 4678899999999999 88887665422100 000 01245667778899999887 6778885 3332
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
.+.+.+.+-++.+.+ + +-+.|-.|.|.-||... -.+.+.-.+.++.+.+.+.+.+=.+
T Consensus 201 ---------QT~~~~~~~l~~a~~-l-~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~ 268 (416)
T COG0635 201 ---------QTLESLKEDLEQALE-L-GPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQ 268 (416)
T ss_pred ---------CCHHHHHHHHHHHHh-C-CCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcE
Confidence 234455555555554 2 24577779999999852 1234456678888888888877633
No 120
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=80.66 E-value=16 Score=39.35 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcC-CEEEEecC-CCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYG-VKVIVDLH-AAPGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~G-i~VILDlH-~~pg~qng~~~sg~ 303 (506)
.++++.++.+++.|+|.|-|.| ..+.+..- ... .....+.+.++++.++++| +.|.+||- +.||
T Consensus 160 ~~t~e~l~~l~~aGvnRiSiGV--QSf~d~vL-k~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPg---------- 226 (449)
T PRK09058 160 GFDDEKADAALDAGANRFSIGV--QSFNTQVR-RRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPG---------- 226 (449)
T ss_pred cCCHHHHHHHHHcCCCEEEecC--CcCCHHHH-HHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCC----------
Confidence 3689999999999999777665 32211100 000 0124567778899999999 78999986 3343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-----------CC-ChHHHHHHHHHHHHHHHhcCCC
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GV-ALDTLKSYYKAGYDAVRKYTST 371 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-----------~~-~~~~~~~~~~~~~~aIR~~~p~ 371 (506)
.+.+.+.+-++.+.+ + +-..|..|.|.-||..+ .. +.+...+.|+.+.+.+++.+=.
T Consensus 227 ---------qT~e~~~~~l~~~~~-l-~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~ 295 (449)
T PRK09058 227 ---------QTPEIWQQDLAIVRD-L-GLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR 295 (449)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 223444444555443 2 22456667888888641 11 4567778899999999988765
Q ss_pred eE
Q 010600 372 AY 373 (506)
Q Consensus 372 ~~ 373 (506)
++
T Consensus 296 ~y 297 (449)
T PRK09058 296 QL 297 (449)
T ss_pred EE
Confidence 54
No 121
>PLN03244 alpha-amylase; Provisional
Probab=80.39 E-value=25 Score=40.33 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHcCCEEEEec---CCCCCCCC----------CCCCCCCCCCCCCCC--------hhhHHHHHHHHH
Q 010600 265 GSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN----------GNEHSATRDGFQEWG--------DSNVADTVAVID 323 (506)
Q Consensus 265 ~~l~~ld~~v~~a~k~Gi~VILDl---H~~pg~qn----------g~~~sg~~~g~~~W~--------~~~~~~~~~~w~ 323 (506)
+..+.|+++|+.|.++||.||||+ |..+.... .+.+.+.+.....|. +..++..++...
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~ 517 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLN 517 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHH
Confidence 357889999999999999999996 33332110 112222111123454 334445555566
Q ss_pred HHHHHhcCCC-------ceeEEE--e------ecC-CCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 324 FLAARYANRP-------SLAAIE--L------INE-PLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 324 ~lA~ryk~~~-------~V~g~e--L------~NE-P~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
...+.|.=+. +++=.+ + .+| |.. ..+ ..-..|.+.+-..|++..|+.+.|.+
T Consensus 518 yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~-~~d-~dAv~fL~laN~~ih~~~P~~itIAE 585 (872)
T PLN03244 518 WWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQ-YVD-KDALMYLILANEILHALHPKIITIAE 585 (872)
T ss_pred HHHHHhCcCcceeecchhheeeccccccccCCccccccc-cCC-chHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6666554321 111001 1 111 111 112 34556788888889999999877776
No 122
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=80.26 E-value=16 Score=38.42 Aligned_cols=122 Identities=20% Similarity=0.103 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEecCC-CCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSATR 304 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~VILDlH~-~pg~qng~~~sg~~ 304 (506)
.++++.++.++++|+|.|-|-| ..+.+..- ... .....+.+.++++++++.++.|.+|+-- .||
T Consensus 101 ~i~~e~L~~l~~~GvnrislGv--QS~~d~vL-~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg----------- 166 (380)
T PRK09057 101 SVEAGRFRGYRAAGVNRVSLGV--QALNDADL-RFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPG----------- 166 (380)
T ss_pred cCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCC-----------
Confidence 4788999999999999666544 33321100 000 1124566777889999999999999862 233
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
...+.+.+-++.+.+ + +-+.|..+.|.=||..+ ..+.+...+.++.+.+.+.+.+-.+
T Consensus 167 --------qt~~~~~~~l~~~~~-l-~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ 235 (380)
T PRK09057 167 --------QTLAAWRAELKEALS-L-AADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPA 235 (380)
T ss_pred --------CCHHHHHHHHHHHHh-c-CCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCch
Confidence 223344444555543 2 33466668888888631 1234556677888888888776543
No 123
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=78.56 E-value=24 Score=36.59 Aligned_cols=120 Identities=20% Similarity=0.108 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecCC-CCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH~-~pg~qng~~~sg~ 303 (506)
-+|++.++.++++|+|.|-|.| ..+.+..- ... .....+.+.++++.+++.|+. |-+|+-- .||
T Consensus 95 ~~~~e~l~~l~~~GvnRiSiGv--QS~~~~~L-~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg---------- 161 (350)
T PRK08446 95 SATKAWLKGMKNLGVNRISFGV--QSFNEDKL-KFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL---------- 161 (350)
T ss_pred CCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC----------
Confidence 4789999999999999666655 33321100 001 123567888899999999996 6688863 232
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCC-------CChHHHHHHHHHHHHHHHhcCCCeE
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-------VALDTLKSYYKAGYDAVRKYTSTAY 373 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~-------~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (506)
.+.+.+.+.++.+.+ . +-+.|..+.|.=||..+- .+. ...++.+.+.+++.+=.++
T Consensus 162 ---------qt~~~~~~~l~~~~~-l-~~~~is~y~L~~~~gT~l~~~~~~~~~~---~~~~~~~~~~l~~~Gy~~y 224 (350)
T PRK08446 162 ---------DNKKLLKEELKLAKE-L-PINHLSAYSLTIEENTPFFEKNHKKKDD---ENLAKFFIEQLEELGFKQY 224 (350)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCEEEeccceecCCChhHHhhhcCCCH---HHHHHHHHHHHHHCCCcEE
Confidence 234555566665554 2 233555567777776421 111 2466777788887765553
No 124
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=77.77 E-value=28 Score=35.33 Aligned_cols=126 Identities=18% Similarity=0.241 Sum_probs=71.6
Q ss_pred ccCCHHHHHHHH---hCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCCCCC
Q 010600 226 SYITDEDFKFLS---SNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEH 300 (506)
Q Consensus 226 ~~ite~d~~~ia---~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~VILDlH-~~pg~qng~~~ 300 (506)
..++++.++.|+ +.|++ +||-++...+.+..- ... .....+.+.++++.++++||.|.+++- ..||
T Consensus 119 d~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d~~L-~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg------- 189 (302)
T TIGR01212 119 DCVPDEVLDLLAEYVERGYE-VWVELGLQTAHDKTL-KKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPG------- 189 (302)
T ss_pred CcCCHHHHHHHHHhhhCCce-EEEEEccCcCCHHHH-HHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC-------
Confidence 346676666665 45885 344343333211100 001 112567788899999999999877654 2232
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC--------CCChHHHHHHHHHHHHHHHhcCCCe
Q 010600 301 SATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP--------GVALDTLKSYYKAGYDAVRKYTSTA 372 (506)
Q Consensus 301 sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~--------~~~~~~~~~~~~~~~~aIR~~~p~~ 372 (506)
+..+.+.+.++.+.+ ++ -..|-.+-|.-+|..+ ......+..+++.+...++...|+.
T Consensus 190 ------------et~e~~~~t~~~l~~-l~-~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~ 255 (302)
T TIGR01212 190 ------------EDREEMMETAKIVSL-LD-VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEV 255 (302)
T ss_pred ------------CCHHHHHHHHHHHHh-cC-CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCe
Confidence 234556666666554 22 2234446677777632 1122345678888888888888866
Q ss_pred EE
Q 010600 373 YV 374 (506)
Q Consensus 373 ~V 374 (506)
.|
T Consensus 256 ~i 257 (302)
T TIGR01212 256 VI 257 (302)
T ss_pred EE
Confidence 54
No 125
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=76.85 E-value=6.8 Score=48.53 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCEEEeCcCccc------ccCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWI------ANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~------~~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.+-+..|+++|+|+|=|.=-+.. ..+.......+. +..+.|+++++.|+++||+||||+=
T Consensus 761 ~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 761 EAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 46688899999999987321110 001001111111 4689999999999999999999983
No 126
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=76.84 E-value=84 Score=31.87 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccc---cCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCC----C
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIA---NDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN----E 299 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~---~~~~~---~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~----~ 299 (506)
++.++.|+..|+|.+=+-+.- .+ ..|.- .+.| .-+.+.++++.|+++||.||-.+-. ||....+ .
T Consensus 20 k~~id~ma~~k~N~l~lhl~D-~f~~~~~p~~~~~~~~y---T~~ei~ei~~yA~~~gI~vIPeid~-pGH~~~~l~~~~ 94 (301)
T cd06565 20 KKLLRLLALLGANGLLLYYED-TFPYEGEPEVGRMRGAY---TKEEIREIDDYAAELGIEVIPLIQT-LGHLEFILKHPE 94 (301)
T ss_pred HHHHHHHHHcCCCEEEEEEec-ceecCCCcccccCCCCc---CHHHHHHHHHHHHHcCCEEEecCCC-HHHHHHHHhCcc
Confidence 456788899999999885431 11 01110 1122 5788999999999999999998754 3221000 0
Q ss_pred CCCCCC-CCCCCC-----hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC-CC-------CCChHHHHHHHHHHHHHH
Q 010600 300 HSATRD-GFQEWG-----DSNVADTVAVIDFLAARYANRPSLAAIELINEPL-AP-------GVALDTLKSYYKAGYDAV 365 (506)
Q Consensus 300 ~sg~~~-g~~~W~-----~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~-~~-------~~~~~~~~~~~~~~~~aI 365 (506)
...-++ ...... +...+-..++++.+++-|...---+|-|=..+.. .. ....+.+..+.+++.+.|
T Consensus 95 ~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v 174 (301)
T cd06565 95 FRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKII 174 (301)
T ss_pred cccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 000000 000000 3455555677888888776322224443222211 10 112345778999999999
Q ss_pred HhcCCCeEEE
Q 010600 366 RKYTSTAYVI 375 (506)
Q Consensus 366 R~~~p~~~Vi 375 (506)
++.++ .+++
T Consensus 175 ~~~g~-~~~~ 183 (301)
T cd06565 175 KKRGP-KPMM 183 (301)
T ss_pred HHcCC-EEEE
Confidence 99987 3444
No 127
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=75.71 E-value=31 Score=36.47 Aligned_cols=124 Identities=18% Similarity=0.089 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC-CCCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSATRD 305 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~-~pg~qng~~~sg~~~ 305 (506)
.++++.++.++++|+|.|-|-| ..+.+..-..--.....+...++++.|++.+..|-+||-- .||
T Consensus 108 ~~~~e~l~~l~~~GvnRiSiGv--QS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPg------------ 173 (390)
T PRK06582 108 SFETEKFKAFKLAGINRVSIGV--QSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSG------------ 173 (390)
T ss_pred cCCHHHHHHHHHCCCCEEEEEC--CcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCC------------
Confidence 4789999999999999555433 3332110000001124566667788888888889999863 232
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCeE
Q 010600 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (506)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (506)
.+.+.+.+-++.+++ + +-+.|-.|.|.=||..+ ..+.+...+.++.+.+..++.+=.++
T Consensus 174 -------qt~e~~~~~l~~~~~-l-~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 243 (390)
T PRK06582 174 -------QTLKDWQEELKQAMQ-L-ATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRY 243 (390)
T ss_pred -------CCHHHHHHHHHHHHh-c-CCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcee
Confidence 223445555555554 2 34567778888888531 12445667788888888888876654
No 128
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=74.86 E-value=13 Score=36.86 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
++-++..+.+|.+.||++-. ....++ ..........+.|.++++.|+++|+++.|-.|
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~-~~~~~~-~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGY-DVYYEE-HDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHhCCCEEEecCc-ccccCc-CCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 56788889999999998632 101011 11111234677888999999999999999877
No 129
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=74.72 E-value=6.2 Score=40.35 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.+.++.+++.||.-|=..+. . +++..+..+.+++++++.|.+.||+||+|.-
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl~-----~---~~~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSLL-----I---PEEDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred HHHHHHHHHcCccceeeecc-----c---CCchHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 45677778889986544321 1 2233446899999999999999999999986
No 130
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=74.05 E-value=83 Score=32.25 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=76.9
Q ss_pred HHHHHHHHhCCCCEEEeCcCc-ccccCCCCCC--------------------CCc-cc--hHHHHHHHHHHHHHcCCEEE
Q 010600 230 DEDFKFLSSNGINAVRIPVGW-WIANDPTPPK--------------------PFV-GG--SSKVLDNAFDWAEKYGVKVI 285 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~-~~~~~~~~~~--------------------~~~-~~--~l~~ld~~v~~a~k~Gi~VI 285 (506)
++-++.|+..++|.+-+.+.- |.+.-+..|. ... .+ ..+.++++|+.|+++||.||
T Consensus 20 k~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rgI~vI 99 (326)
T cd06564 20 KDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDRGVNII 99 (326)
T ss_pred HHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHcCCeEe
Confidence 456777899999999886541 1111000000 000 11 57889999999999999999
Q ss_pred EecCCCCCCCCCC---------C--CCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcC-CCce-eEEEeecCCCCCCCCh
Q 010600 286 VDLHAAPGSQNGN---------E--HSATRDGFQEWG-DSNVADTVAVIDFLAARYAN-RPSL-AAIELINEPLAPGVAL 351 (506)
Q Consensus 286 LDlH~~pg~qng~---------~--~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~-~~~V-~g~eL~NEP~~~~~~~ 351 (506)
-.+-. ||....+ . ......+..... +...+-..++++.+++-|.. .+.+ +|-| |-.......
T Consensus 100 PEID~-PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGgD---E~~~~~~~~ 175 (326)
T cd06564 100 PEIDS-PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGAD---EYAGDAGYA 175 (326)
T ss_pred ccCCC-cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEeccc---cccccCccH
Confidence 87742 3321000 0 000000000111 34555556788888888873 3322 4433 322112345
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 010600 352 DTLKSYYKAGYDAVRKYTS 370 (506)
Q Consensus 352 ~~~~~~~~~~~~aIR~~~p 370 (506)
+.+..|.+++.+.|++.+.
T Consensus 176 ~~~~~f~~~~~~~v~~~gk 194 (326)
T cd06564 176 EAFRAYVNDLAKYVKDKGK 194 (326)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 6788999999999999854
No 131
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=74.03 E-value=9.8 Score=42.51 Aligned_cols=60 Identities=22% Similarity=0.101 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCCEEEeCcCccc-----c-cCCCCCCCC-------cc--chHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWI-----A-NDPTPPKPF-------VG--GSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~-----~-~~~~~~~~~-------~~--~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+...+.|+++|+++|=+.=.+.. . ..|....-| ++ +.++.++++++.|.++||+||+|+=
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 67788999999999998433321 0 001111111 11 5799999999999999999999995
No 132
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=73.70 E-value=34 Score=37.38 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=73.9
Q ss_pred ccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCC-EEEEecCC-CCCCCCCCCCCC
Q 010600 226 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGV-KVIVDLHA-APGSQNGNEHSA 302 (506)
Q Consensus 226 ~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi-~VILDlH~-~pg~qng~~~sg 302 (506)
..+|++.++.|++.|+|.|-| +...+.+..- ... .....+.+.++++.|+++|+ .|-+|+-. .||
T Consensus 265 d~it~e~L~~Lk~~Gv~RISI--GvQS~~d~vL-k~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg--------- 332 (488)
T PRK08207 265 DTITEEKLEVLKKYGVDRISI--NPQTMNDETL-KAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG--------- 332 (488)
T ss_pred CCCCHHHHHHHHhcCCCeEEE--cCCcCCHHHH-HHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC---------
Confidence 357899999999999995544 4333221100 000 12367888899999999999 77788763 232
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC---------CCChHHHHHHHHHHHHHHHhcCCCeE
Q 010600 303 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP---------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (506)
Q Consensus 303 ~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (506)
.+.+.+.+.++.+.+ ++ -+.+-.+.|.=+|..+ ..+.+...+.++.+.+..++.+-.++
T Consensus 333 ----------Et~ed~~~tl~~l~~-L~-pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~Y 400 (488)
T PRK08207 333 ----------EGLEEVKHTLEEIEK-LN-PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVPY 400 (488)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHhh
Confidence 234555555555543 22 2233334444334321 12345677788888888888775554
No 133
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=73.50 E-value=43 Score=30.51 Aligned_cols=118 Identities=20% Similarity=0.124 Sum_probs=67.9
Q ss_pred CCceeeEe----ecCceeeec--CCCCcCCccCCCCccccCceeeEeeeeceeEEEEecCCCceEEecCC--CC--CCc-
Q 010600 31 KLPLRAVN----LGNWLVTEG--WMKPSRFDDIPNKDLLDGTQVQFMSTKFQKYIAAESGGGTIVVANRT--SA--SGW- 99 (506)
Q Consensus 31 ~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~--~~--~~w- 99 (506)
..-+|.+. .-|||...+ =..|..=..+......|| .|.+|+.-++||--.-++++--++|.-+ .. +.|
T Consensus 15 ~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG-~V~Ir~~y~nKfWrr~s~n~~WI~ada~~p~ed~s~~~ 93 (153)
T PF07468_consen 15 GKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDG-LVHIRCCYNNKFWRRSSPNDYWIWADADDPDEDQSKPS 93 (153)
T ss_dssp S-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT--EEEEETTTTEEEEESCCC--BEEEEESSHHH-TCSTC
T ss_pred CcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCC-eEEEEeccCCceeEeCCCCCcEEEecCCCcccccCCCC
Confidence 33466666 557777654 222222112222234566 8999999999999976666556666533 32 233
Q ss_pred ce-EEEEeeC---CceEEEEec-CCeEEEeecCCC--CceEEEeecCCCCCc--eEEEE
Q 010600 100 ET-FRLWRVN---ETFYNFRVN-NKQFIGLENQGQ--GNGLVAVSNTAGYSE--TFQIV 149 (506)
Q Consensus 100 e~-f~~~~~~---~~~~~~~~~-~~~~v~~~~~~~--~~~~~a~~~~~g~~E--tF~iv 149 (506)
.| |+.+.++ ..+++||.. |+.|...-..|| .+-|.|..++|..-- -|+|+
T Consensus 94 cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r~t~~~~~~sCL~A~~~~i~~~~~~~~~~i 152 (153)
T PF07468_consen 94 CTLFEPVKVDVKDFNVIALRNMQNGHFCKRLTYGGKFVSCLNAASSSIDREAKDVFTII 152 (153)
T ss_dssp GG-EEEEESCCCETTEEEEEETTTTEEEEEE--STTBSSEEEEEESS--CCGTT-EEEE
T ss_pred ceEEEEEEecCCCccEEEEEecCCceEEEEEccCCcceeeEeeccCcccccccceEEEc
Confidence 45 8887775 467899987 888888764333 357899888886433 46654
No 134
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=72.99 E-value=1.2e+02 Score=31.27 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=74.4
Q ss_pred HHHHHHHHhCCCCEEEeCcCc---ccccCCCCC-----CCC------ccc--hHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGW---WIANDPTPP-----KPF------VGG--SSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~---~~~~~~~~~-----~~~------~~~--~l~~ld~~v~~a~k~Gi~VILDlH~~pg 293 (506)
++.++.|+..++|.+-+.+.- |.+.-+.-| +.+ ..+ ..+.+.++|+.|+++||.||-.+-. ||
T Consensus 21 k~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEiD~-PG 99 (329)
T cd06568 21 KRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEIDM-PG 99 (329)
T ss_pred HHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecCC-cH
Confidence 455677899999999886631 111111100 000 001 4678999999999999999997742 22
Q ss_pred CCCC-------CCCCCC--------CCCCCCCC---hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHH
Q 010600 294 SQNG-------NEHSAT--------RDGFQEWG---DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLK 355 (506)
Q Consensus 294 ~qng-------~~~sg~--------~~g~~~W~---~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~ 355 (506)
.... ....+. ..+..... +...+-..++++.+++-|.+.---+|- -|... ...+.+.
T Consensus 100 H~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHiGg---DE~~~--~~~~~~~ 174 (329)
T cd06568 100 HTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHIGG---DEAHS--TPHDDYA 174 (329)
T ss_pred HHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEEec---ccCCC--CchHHHH
Confidence 1000 000000 00000011 344445556777777766543222443 34432 2456788
Q ss_pred HHHHHHHHHHHhcCC
Q 010600 356 SYYKAGYDAVRKYTS 370 (506)
Q Consensus 356 ~~~~~~~~aIR~~~p 370 (506)
.|.+++.+.|++.+.
T Consensus 175 ~f~~~~~~~v~~~Gk 189 (329)
T cd06568 175 YFVNRVRAIVAKYGK 189 (329)
T ss_pred HHHHHHHHHHHHCCC
Confidence 899999999998764
No 135
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=70.94 E-value=7.2 Score=43.12 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccc-----cCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIA-----NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~-----~~~~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.+-++.|+++|++++=|+=-+... ..+.......+ +.++.|.++|.++.+.||++|+|+=
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 356899999999999995322111 11111111222 5789999999999999999999984
No 136
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=70.82 E-value=20 Score=38.63 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~k~Gi~-VILDlH-~~pg~qng~~~sg~ 303 (506)
.++++.++.|+++|+|.|-|.+ ..+.+. .-.... ....+.+.++++.++++|+. |-+|+- +.||
T Consensus 148 ~l~~e~l~~lk~~G~~risiGv--qS~~~~-~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (455)
T TIGR00538 148 YITKDVIDALRDEGFNRLSFGV--QDFNKE-VQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK---------- 214 (455)
T ss_pred cCCHHHHHHHHHcCCCEEEEcC--CCCCHH-HHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC----------
Confidence 4689999999999999777655 222110 000010 12467788899999999996 668875 2343
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC----------CCCChHHHHHHHHHHHHHHHhcCCC
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTST 371 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p~ 371 (506)
.+.+.+.+.++.+.+ ++ -..|..|.|.=+|.. ...+.+...+.++.+.+..++.+=.
T Consensus 215 ---------qt~e~~~~tl~~~~~-l~-~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 215 ---------QTKESFAKTLEKVAE-LN-PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 234555555565554 21 223433444223321 0124567778888888888876643
No 137
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=69.05 E-value=35 Score=29.56 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=49.5
Q ss_pred EEEEecCCeEEEeecCCCCceEEEeecCCCCCceEEEEEcCCCCcceEEecc-CCceeEeccceeeecCC
Q 010600 112 YNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSAS-NGMFIQAISETRLTADY 180 (506)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~EtF~iv~~~~~~~~v~i~a~-nG~~Lqa~~~~~v~ad~ 180 (506)
.+|=..+|+|+.+.+ ++.|.++.+...+...|++...+. +.|.|+.. .++||..+....+.+..
T Consensus 3 ~~Ly~~~~~~L~i~~---~g~V~gt~~~~~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~~~ 67 (122)
T PF00167_consen 3 VQLYCRTGYFLQINP---NGTVDGTGDDNSPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYGSK 67 (122)
T ss_dssp EEEEETTSEEEEEET---TSBEEEESSTTSTTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEEES
T ss_pred EEEEECCCeEEEECC---CCeEeCCCCcCcceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEcccc
Confidence 355555799999986 457999999989999999988865 47999986 68999988644444443
No 138
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.56 E-value=21 Score=35.49 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+..++..+.+|...|+++- +....++. .+...+...+.|+++.+.|+++|+.+.+..|
T Consensus 102 ~~~i~~a~~lG~~~i~~~~-~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAG-YDVYYEQA-NNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHcCCCEEEECC-cccccccc-HHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 5678888999999999852 11000110 0111123467788899999999999999887
No 139
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=68.52 E-value=1e+02 Score=32.03 Aligned_cols=141 Identities=12% Similarity=0.130 Sum_probs=74.2
Q ss_pred HHHHHHHHhCCCCEEEeCcCc---ccccCCCCC-----CCCcc-c--hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGW---WIANDPTPP-----KPFVG-G--SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN 298 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~---~~~~~~~~~-----~~~~~-~--~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~ 298 (506)
++.++.|+..++|.+-+.+.- |.+.-+.-| +.+.. + ..+.+.++|+.|+++||.||..+- .||....+
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID-~PGH~~a~ 99 (348)
T cd06562 21 KRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID-TPGHTGSW 99 (348)
T ss_pred HHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc-CchhhHHH
Confidence 456777889999999876531 112111111 11111 1 578899999999999999999873 23321100
Q ss_pred ------------C----CCCCCCCCCC-CC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCC------------
Q 010600 299 ------------E----HSATRDGFQE-WG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG------------ 348 (506)
Q Consensus 299 ------------~----~sg~~~g~~~-W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~------------ 348 (506)
. .+........ -. +...+-..++++.+++-|...---+|-|=.+......
T Consensus 100 ~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~~~~~w~~~p~~~~~m~~~g 179 (348)
T cd06562 100 GQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEVNFNCWNSNPEIQKFMKKNN 179 (348)
T ss_pred HHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCCCCCcccCCHHHHHHHHHcC
Confidence 0 0000000000 00 3444555577777887776432224544332221100
Q ss_pred -CCh-HHHHHHHHHHHHHHHhcCCC
Q 010600 349 -VAL-DTLKSYYKAGYDAVRKYTST 371 (506)
Q Consensus 349 -~~~-~~~~~~~~~~~~aIR~~~p~ 371 (506)
.+. +.+..|.+++.+.|++.+..
T Consensus 180 ~~~~~~l~~~f~~~~~~~l~~~Gk~ 204 (348)
T cd06562 180 GTDYSDLESYFIQRALDIVRSLGKT 204 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCe
Confidence 111 23345788888999988743
No 140
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=68.41 E-value=53 Score=34.70 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=71.8
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEecCC-CCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSATR 304 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~VILDlH~-~pg~qng~~~sg~~ 304 (506)
.++++.++.++++|+|-|=|.| ..+.+..- ... .....+.+.++++.+++.+..|-+|+-. .||
T Consensus 119 ~~~~e~L~~l~~~GvnrisiGv--QS~~~~~L-~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg----------- 184 (394)
T PRK08898 119 TFEAEKFAQFRASGVNRLSIGI--QSFNDAHL-KALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG----------- 184 (394)
T ss_pred CCCHHHHHHHHHcCCCeEEEec--ccCCHHHH-HHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC-----------
Confidence 4678999999999999666654 32211100 000 0123466777888888888888888853 232
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCeE
Q 010600 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTSTAY 373 (506)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~~ 373 (506)
...+.+.+-++.+.+ ++ -+.|-.+.+.=||..+ -.+.+...+.++.+.+.+++.+-.++
T Consensus 185 --------qt~~~~~~~l~~~~~-l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 250 (394)
T PRK08898 185 --------QTLDEALADVETALA-FG-PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHY 250 (394)
T ss_pred --------CCHHHHHHHHHHHHh-cC-CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 223344444444433 22 2355556677666532 12345566777777888888775543
No 141
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.40 E-value=62 Score=31.84 Aligned_cols=122 Identities=10% Similarity=0.021 Sum_probs=70.4
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecC
Q 010600 264 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 343 (506)
Q Consensus 264 ~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NE 343 (506)
+..++.+++.++.|+..|.++|+- | |+.. +.. .. .+...+.+++.++.|++.-+...-.+++|.++
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~-~--~~~~-~~~------~~---~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~- 151 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLI-S--AAHA-GYL------TP---PNVIWGRLAENLSELCEYAENIGMDLILEPLT- 151 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEE-c--CCCC-CCC------CC---HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC-
Confidence 357899999999999999998854 3 2211 100 00 03456777788888888777776668888664
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcC-CCeEEEEeCCC---CCCChhhhhcccCCCCcEEEEEEeecc
Q 010600 344 PLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKELLSFASGLSRVVIDVHYYNL 407 (506)
Q Consensus 344 P~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~~~~---~~~~~~~~~~~~~~~~nvv~s~H~Y~~ 407 (506)
|... ....-.+++...+++++ |+..+.+.... .+.++..... ....-+..+|.-..
T Consensus 152 ~~~~-----~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~---~~~~rI~~vHi~D~ 211 (275)
T PRK09856 152 PYES-----NVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFD---KLGDKLRHLHIVDS 211 (275)
T ss_pred CCcc-----cccCCHHHHHHHHHHcCCCcceeEEeecchhcCCCCHHHHHH---HhCCcEEEEEEEcC
Confidence 2211 11122566777788877 55555554221 1122222211 12334788887653
No 142
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=67.89 E-value=37 Score=36.23 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCCEEEeC-cCcccccCCCC----------C---CCCccchHHHHHHHHHHH-HHcCCEEEEecCC
Q 010600 230 DEDFKFLSSNGINAVRIP-VGWWIANDPTP----------P---KPFVGGSSKVLDNAFDWA-EKYGVKVIVDLHA 290 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIP-v~~~~~~~~~~----------~---~~~~~~~l~~ld~~v~~a-~k~Gi~VILDlH~ 290 (506)
++.|+.+++.|+|.|-++ +- ......++ + .+-.+..++.+.++|..+ +++||.+|.|++-
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq-~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~ 99 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQ-ERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVL 99 (423)
T ss_pred HHHHHHHHHcCCcEEEecccc-cCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEee
Confidence 688999999999999983 31 11110111 0 011123578888988877 5899999999963
No 143
>PRK04302 triosephosphate isomerase; Provisional
Probab=67.65 E-value=1e+02 Score=29.71 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
+.-++.+++.|++.|=+|-+-. . . ..+.+.+.+..|+++||.+|++.|..
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser----~---~-----~~~e~~~~v~~a~~~Gl~~I~~v~~~------------------ 124 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSER----R---L-----TLADIEAVVERAKKLGLESVVCVNNP------------------ 124 (223)
T ss_pred hhHHHHHHHcCCCEEEEecccc----c---c-----CHHHHHHHHHHHHHCCCeEEEEcCCH------------------
Confidence 4558889999999997654211 0 1 12448889999999999999987731
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCCh-HHHHHHHHHHHHHHHhcCCCeEEEEeCCCC
Q 010600 310 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVAL-DTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (506)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~-~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 381 (506)
++. +.+ .+..+.+++|+...= ...+... .......++..+.||+..++.+|+.+++..
T Consensus 125 ------~~~----~~~---~~~~~~~I~~~p~~~-igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 125 ------ETS----AAA---AALGPDYVAVEPPEL-IGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred ------HHH----HHH---hcCCCCEEEEeCccc-cccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 011 111 122356777764211 1111110 012234677788899877778888886654
No 144
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=66.88 E-value=7.4 Score=36.20 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 292 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~p 292 (506)
+..++..+.+|...|+++.+.+........+...+...+.|+++++.|+++|+.+.|-.|...
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCc
Confidence 577888899999999998763211111110111234678888999999999999999888543
No 145
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=66.82 E-value=15 Score=36.10 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCC---CceeEEEeecCCCC----------CCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCC
Q 010600 320 AVIDFLAARYANR---PSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (506)
Q Consensus 320 ~~w~~lA~ryk~~---~~V~g~eL~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 380 (506)
+++..|.++|... ..|-+|.|=|||.. ..++.+.+..-+-+..++||+.+|+..|+=...|
T Consensus 108 ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~GP~~w 181 (239)
T PF12891_consen 108 EWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFGPVEW 181 (239)
T ss_dssp HHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEEEEE-
T ss_pred HHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEeechhh
Confidence 4466677777665 36778999999974 1345677888888899999999999988644333
No 146
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=66.65 E-value=41 Score=33.71 Aligned_cols=64 Identities=13% Similarity=0.015 Sum_probs=45.5
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
.+++|++...+.|+..|+++++-........-..-.+..++.+.++++.|+++|+.|.+.+-..
T Consensus 74 ~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~ 137 (274)
T cd07938 74 PNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTA 137 (274)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeE
Confidence 3588999999999999999875422111111111124578889999999999999998877644
No 147
>PRK14565 triosephosphate isomerase; Provisional
Probab=66.62 E-value=70 Score=31.42 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
|=....|+++|++.|=|--+ +.. .+-.+.-+.+.+=+..|.++||.+||..=....
T Consensus 75 evS~~mLkd~G~~~viiGHS-----ERR---~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e---------------- 130 (237)
T PRK14565 75 EISAKMLKECGCSYVILGHS-----ERR---STFHETDSDIRLKAESAIESGLIPIICVGETLE---------------- 130 (237)
T ss_pred ccCHHHHHHcCCCEEEECcc-----ccc---CcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHH----------------
Confidence 33467789999998876321 111 121223344555558999999999998742210
Q ss_pred CChhhHHHHH-HHHHHHHHHhcC-CCceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCChh
Q 010600 310 WGDSNVADTV-AVIDFLAARYAN-RPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHK 386 (506)
Q Consensus 310 W~~~~~~~~~-~~w~~lA~ryk~-~~~V~g~eL~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~ 386 (506)
......+. -+.++|..-+.+ .+-|++| ||... +.....=.+.++++...||+..++..|+.++.....+..
T Consensus 131 --~r~~~~~~~~~~~Ql~~~l~~~~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~ 204 (237)
T PRK14565 131 --DRENGMTKDVLLEQCSNCLPKHGEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIR 204 (237)
T ss_pred --HHHccChHHHHHHHHHHHhcCCCCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHH
Confidence 00001111 223344444433 2466777 47541 111112234578888999998878888888655544555
Q ss_pred hhhcc
Q 010600 387 ELLSF 391 (506)
Q Consensus 387 ~~~~~ 391 (506)
.+...
T Consensus 205 ~l~~~ 209 (237)
T PRK14565 205 DLKSI 209 (237)
T ss_pred HHhcC
Confidence 55553
No 148
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=66.40 E-value=51 Score=29.40 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=56.9
Q ss_pred cCceeeEeeeeceeEEEEecCCCceEEecCCCC----CCcceEEEEeeCCceEEEEec-CCeEEEeecCCCC--ceEEEe
Q 010600 64 DGTQVQFMSTKFQKYIAAESGGGTIVVANRTSA----SGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQG--NGLVAV 136 (506)
Q Consensus 64 ~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~----~~we~f~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~a~ 136 (506)
|| .|.+||.-+|||--+- .-.++|.-+.. ++=.-|+-+.+++++++||.. +|.|+.....||. +-|.|.
T Consensus 50 dg-~V~ik~~~~nKfWr~s---~~WI~a~s~d~~e~~sscTLF~Pv~~d~~~i~lr~vq~~~~~~r~t~~~~~~~CL~A~ 125 (139)
T smart00791 50 NG-LVHIKSNYTNKFWRLS---HYWITADANDPDENKSACTLFRPLYVEMKKIRLLNVQLGHYTKRYTVGKSFVSCLNAA 125 (139)
T ss_pred CC-cEEEEecCCCceEccC---CCEEEecCCCCccCCCcccEEeEEeccCceEEEEEecCCceEEeecCCCCcccceeec
Confidence 55 8999999999998654 44677766555 233457778888999999988 9999998754332 257777
Q ss_pred ecCCCCCceEE
Q 010600 137 SNTAGYSETFQ 147 (506)
Q Consensus 137 ~~~~g~~EtF~ 147 (506)
.+++..-..++
T Consensus 126 ~~~i~~~a~l~ 136 (139)
T smart00791 126 SSQIDTKAVLH 136 (139)
T ss_pred cccccceeeEE
Confidence 66665533333
No 149
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.83 E-value=45 Score=35.49 Aligned_cols=146 Identities=16% Similarity=0.046 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCCEEEeCcCccc-ccCCCC------CCCC---ccchHHHHHHHHHHHHHcCCEEEEecCC----CCCC-
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWI-ANDPTP------PKPF---VGGSSKVLDNAFDWAEKYGVKVIVDLHA----APGS- 294 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~-~~~~~~------~~~~---~~~~l~~ld~~v~~a~k~Gi~VILDlH~----~pg~- 294 (506)
.+.++.++.+|||+|=.-|.-.- ..-|+. .-+. .....+-|..+|+.|+|+||.|+-=+-- .+-+
T Consensus 67 ~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~ 146 (418)
T COG1649 67 KDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSP 146 (418)
T ss_pred HHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCCCCh
Confidence 56788999999999976442100 001110 1111 2457888999999999999999641110 0000
Q ss_pred --C-CC-CCCCCC-------CCC--CCCCC----hhhHHHHHHHHHHHHHHhcCCC----ceeEE---------------
Q 010600 295 --Q-NG-NEHSAT-------RDG--FQEWG----DSNVADTVAVIDFLAARYANRP----SLAAI--------------- 338 (506)
Q Consensus 295 --q-ng-~~~sg~-------~~g--~~~W~----~~~~~~~~~~w~~lA~ryk~~~----~V~g~--------------- 338 (506)
. +. +..++. ..+ ...|. ++.++...+++..++++|.-+. .+..+
T Consensus 147 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~ 226 (418)
T COG1649 147 LTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYR 226 (418)
T ss_pred hHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHH
Confidence 0 00 000000 011 23343 5667777789999999986543 22211
Q ss_pred -EeecCCCCCCCChH--------HHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 339 -ELINEPLAPGVALD--------TLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 339 -eL~NEP~~~~~~~~--------~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
|-.+.|. .+.. ...++++++..+||++.|+..+-++.
T Consensus 227 ~et~~~~~---~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 227 YETGKGPP---SNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred hhccCCCC---CCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 1111111 1223 33468999999999999998887775
No 150
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=64.18 E-value=78 Score=32.85 Aligned_cols=59 Identities=8% Similarity=0.140 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg 293 (506)
-..+.++++|.++|-+-+.| +|+.+.......++.|.++.+.|+++||-+++-+-.+|.
T Consensus 110 ~sve~a~~~GAdAVk~lv~~----~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~ 168 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYY----RPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDG 168 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEe----CCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 34778999999999997744 233221123458889999999999999999998655543
No 151
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=62.58 E-value=9.2 Score=38.12 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=44.6
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
.+.+|++...+.|+..|||.++-........-..-.+..++.+.++++.|+++|++|-+.+-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 72 CHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 468899999999999999976432111000001112457888999999999999999888753
No 152
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=62.53 E-value=20 Score=36.39 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCCEEEeC-cCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC-CCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIP-VGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA-PGSQNGNEHSATRDGF 307 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIP-v~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~-pg~qng~~~sg~~~g~ 307 (506)
.+..+.+++.|+|.|=|- |+. .+.-....+++.+.++.+..+.|||+|-|.+--+ |-...|...+
T Consensus 60 ~~YARllASiGINgvvlNNVNa-------~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL~Ta------ 126 (328)
T PF07488_consen 60 RDYARLLASIGINGVVLNNVNA-------NPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELGGLPTA------ 126 (328)
T ss_dssp HHHHHHHHHTT--EEE-S-SS---------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-S--------
T ss_pred HHHHHHHhhcCCceEEeccccc-------ChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccCCcCcC------
Confidence 466778899999999873 221 1122344689999999999999999999988633 2111111111
Q ss_pred CCCChhhHHHHHHHHHHHHH-HhcCCCceeEEEeecC----CCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe----C
Q 010600 308 QEWGDSNVADTVAVIDFLAA-RYANRPSLAAIELINE----PLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS----N 378 (506)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~-ryk~~~~V~g~eL~NE----P~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~----~ 378 (506)
+..-.+..+.|+..++ -|+--|.+-||=+.=+ |.+.... -...+-+.-+.+|++.++. +|+-- +
T Consensus 127 ----DPld~~V~~WW~~k~~eIY~~IPDfgGflVKAdSEGqPGP~~Yg-RthAdGANmlA~Al~P~GG--~V~wRaFVY~ 199 (328)
T PF07488_consen 127 ----DPLDPEVRQWWKDKADEIYSAIPDFGGFLVKADSEGQPGPFTYG-RTHADGANMLARALKPHGG--IVIWRAFVYN 199 (328)
T ss_dssp -----TTSHHHHHHHHHHHHHHHHH-TT--EEEE--SBTTB--GGGGT---HHHHHHHHHHHHGGGT---EEEEE-----
T ss_pred ----CCCCHHHHHHHHHHHHHHHHhCCCccceEEEecCCCCCCCcccC-CCchhhHHHHHHHhhccCC--EEEEEeEeec
Confidence 2334577788887665 4777787777755433 3211111 2455666777788877764 33321 1
Q ss_pred ---CCCC--CC-----hhhhhccc-CCCCcEEEEEEeeccCC
Q 010600 379 ---RLGP--AD-----HKELLSFA-SGLSRVVIDVHYYNLFS 409 (506)
Q Consensus 379 ---~~~~--~~-----~~~~~~~~-~~~~nvv~s~H~Y~~f~ 409 (506)
.|.. .| ...|.++. .-.+|+++.+- |.|.+
T Consensus 200 ~~~dw~d~~~DRakaAy~~F~pLDG~F~dNVilQiK-nGPiD 240 (328)
T PF07488_consen 200 CHQDWRDRKTDRAKAAYDEFKPLDGQFDDNVILQIK-NGPID 240 (328)
T ss_dssp TT--TTTTTS-GGGHHHHHHGGGTT-S-TTEEEEEE-SSSSS
T ss_pred cccccccccccHHHHHHhhccCCCCCcccceEEEee-cCCcc
Confidence 1211 11 23454443 24689999986 55543
No 153
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=61.44 E-value=14 Score=38.63 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
++.++.+++.||..|=.-+. .|+ .-.+..++.+++++++|+++||+||+|+..
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL~-----ipe---~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSLH-----IPE---DDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHCCCCEEECCCC-----cCC---CCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 46677888999987655331 122 112458999999999999999999999973
No 154
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.43 E-value=67 Score=29.57 Aligned_cols=128 Identities=18% Similarity=0.183 Sum_probs=73.0
Q ss_pred HHHHHHHhCCCCEEEeCcC--cccccC--CCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCC
Q 010600 231 EDFKFLSSNGINAVRIPVG--WWIAND--PTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDG 306 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~--~~~~~~--~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g 306 (506)
+-.+.+++.|+..+-+-.. +..... ..+..+ .+..++.+.++++.|++.|.+.|+- |.. .. . .
T Consensus 31 ~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~-~~g--~~---~-~----- 97 (213)
T PF01261_consen 31 ELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVV-HSG--RY---P-S----- 97 (213)
T ss_dssp HHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEE-ECT--TE---S-S-----
T ss_pred HHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceee-cCc--cc---c-c-----
Confidence 4455567889995554332 211110 111122 4456999999999999999988654 421 00 0 0
Q ss_pred CCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCC-CeEEEEe
Q 010600 307 FQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMS 377 (506)
Q Consensus 307 ~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~Viv~ 377 (506)
..... ....+.+++.++.+++..+.+...+++|....+... .... .+++...++++++ +.-+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~i~~D 164 (213)
T PF01261_consen 98 GPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSE--TPFS----VEEIYRLLEEVDSPNVGICFD 164 (213)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSS--EESS----HHHHHHHHHHHTTTTEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcccc--chhh----HHHHHHHHhhcCCCcceEEEe
Confidence 00011 356778888888888877776666777744444321 1101 5667777777774 4555554
No 155
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=59.26 E-value=29 Score=42.28 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCEEEe-CcCcccccCCCCC--------CC-Cc--cchHHHHHHHHHHHHHc-CCEEEEec
Q 010600 230 DEDFKFLSSNGINAVRI-PVGWWIANDPTPP--------KP-FV--GGSSKVLDNAFDWAEKY-GVKVIVDL 288 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~~~~~~~~~~--------~~-~~--~~~l~~ld~~v~~a~k~-Gi~VILDl 288 (506)
++.++.|+++|+|.|-+ |+.- ......+. +| +- ++..+.|+++|+.+.+. ||++|+|.
T Consensus 135 ~~~L~~ik~lGyN~IhftPI~~-~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 135 EPRLRVAKEKGYNMIHFTPLQE-LGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred HHHHHHHHHcCCCEEEeCCCcc-CCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 78999999999999998 3320 11111110 01 11 14678899999999985 99999998
No 156
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=58.72 E-value=23 Score=35.02 Aligned_cols=60 Identities=18% Similarity=0.039 Sum_probs=41.5
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.+++++...+.|+..||+.++-........-..-.+..++.+.++++.|+++|+.|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 588999999999999999764321100000011123568889999999999999987654
No 157
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=58.38 E-value=1e+02 Score=31.62 Aligned_cols=141 Identities=11% Similarity=0.096 Sum_probs=89.8
Q ss_pred hhccccCCHHHHHHHHhCCC-CEEEeCcCcc-cccC----------------CCCC----CCC--ccchHHHHHHHHHH-
Q 010600 222 DHWDSYITDEDFKFLSSNGI-NAVRIPVGWW-IAND----------------PTPP----KPF--VGGSSKVLDNAFDW- 276 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~-N~VRIPv~~~-~~~~----------------~~~~----~~~--~~~~l~~ld~~v~~- 276 (506)
+||+.++ ++-++.|++.|+ +.|=+|+--+ .... ..+. ..| .+.+++.+-+.|+.
T Consensus 98 ry~~P~i-~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~ 176 (320)
T COG0276 98 RYGPPFI-EEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREK 176 (320)
T ss_pred cCCCCcH-HHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHH
Confidence 5676665 688999999999 4666776321 1100 0000 011 13467777666643
Q ss_pred HHHc---CCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhc--CCCceeEEEeecCCCCCCCCh
Q 010600 277 AEKY---GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA--NRPSLAAIELINEPLAPGVAL 351 (506)
Q Consensus 277 a~k~---Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk--~~~~V~g~eL~NEP~~~~~~~ 351 (506)
.+++ +.++|+..|..|-+.... | +.+.++..+.-+-|+++.+ .....++|+--.=|.
T Consensus 177 ~~~~~~~~~~llfSaHglP~~~~~~---G---------DpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~------ 238 (320)
T COG0276 177 LAKHPRDDDVLLFSAHGLPKRYIDE---G---------DPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPE------ 238 (320)
T ss_pred HHhcCCCCeEEEEecCCCchhhhhc---C---------CchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCC------
Confidence 4444 699999999998642210 1 2566777778888888887 566778898744333
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCCC
Q 010600 352 DTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (506)
Q Consensus 352 ~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 381 (506)
+-+..+.++.++.+.+.+.+++++++-++-
T Consensus 239 ~WL~P~t~~~l~~L~~~g~k~iiv~pigFv 268 (320)
T COG0276 239 PWLQPYTDDLLEELGEKGVKKIIVVPIGFV 268 (320)
T ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCchh
Confidence 234556677777777778888999987665
No 158
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=58.34 E-value=91 Score=32.49 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecC-CCC-CC
Q 010600 271 DNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE-PLA-PG 348 (506)
Q Consensus 271 d~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NE-P~~-~~ 348 (506)
++++..|+++|++|++.- ..+. . ..=.+..++++++-+-.++++|.= -|++|==| |.. ..
T Consensus 67 ~~~~~~A~~~~v~v~~~~-~~~~-----~--------~l~~~~~R~~fi~siv~~~~~~gf----DGIdIDwE~p~~~~~ 128 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-DVPL-----E--------QISNPTYRTQWIQQKVELAKSQFM----DGINIDIEQPITKGS 128 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-ccCH-----H--------HcCCHHHHHHHHHHHHHHHHHhCC----CeEEEcccCCCCCCc
Confidence 478889999999999862 1110 0 000135677777766667777732 23444333 321 12
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 349 VALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 349 ~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
.+.+.+..+.+++.+++++.++...|.+.
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 34567888999999999887766555554
No 159
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=57.93 E-value=38 Score=32.98 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
++-++..+.+|...||++.+.... ++ +.+...+...+.|.++.+.|+++||.+.|..|..
T Consensus 87 ~~~i~~a~~lg~~~i~~~~g~~~~-~~-~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 87 ALAIAYARALGCPQVNCLAGKRPA-GV-SPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHhCCCEEEECcCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 456888899999999997653210 00 0011112345678888999999999999988743
No 160
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=57.68 E-value=16 Score=32.03 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=44.1
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCC-CCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecCCCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPT-PPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPG 293 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~-~~~~~-~~~~l~~ld~~v~~a~k~Gi~-VILDlH~~pg 293 (506)
++++.++.|++.|++.|++.+..- ++. -...+ ....++.+-++++.+.++|+. ++.-+...|+
T Consensus 88 ~~~~~l~~l~~~~~~~i~~~l~s~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 88 LDEELLDELKKLGVDRIRISLESL---DEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp HCHHHHHHHHHTTCSEEEEEEBSS---SHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTT
T ss_pred hhHHHHHHHHhcCccEEecccccC---CHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC
Confidence 348999999999999999977421 111 00011 234788888999999999998 6666665554
No 161
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=57.03 E-value=17 Score=37.30 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=50.1
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg 293 (506)
+.+-+.++|+++|.++|.+=+-| +|+.+...+....+.+.++.+.|++.+|--+|.+-.+|.
T Consensus 108 l~~ws~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~ 169 (329)
T PRK04161 108 LVEWSVKRLKEAGADAVKFLLYY----DVDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDE 169 (329)
T ss_pred cchhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 45567999999999999996533 454444455568999999999999999999999998864
No 162
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=56.54 E-value=1.2e+02 Score=30.14 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~ 305 (506)
.++++.++.|+++|++.|-+.+- . +++--.... ...++..-++++.++++||.|...+ ..|. +
T Consensus 120 ~~~~e~l~~Lk~aG~~~v~i~~E---~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~--i~Gl-~--------- 183 (296)
T TIGR00433 120 LLDPEQAKRLKDAGLDYYNHNLD---T-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGG--IFGL-G--------- 183 (296)
T ss_pred CCCHHHHHHHHHcCCCEEEEccc---C-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeE--EEeC-C---------
Confidence 57899999999999999887653 1 111001111 2356777788999999999976543 3331 0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEee-cCCCCC--CCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELI-NEPLAP--GVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~-NEP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
...+...+.++.+.+ ++ +..+.+-.+ =.|..+ ...+....+ +-+.+...|..-|+..|-+..
T Consensus 184 -------et~~d~~~~~~~l~~-l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~-~~~~ia~~r~~lp~~~i~~~~ 248 (296)
T TIGR00433 184 -------ETVEDRIGLALALAN-LP--PESVPINFLVKIKGTPLADNKELSADD-ALKTIALARIIMPKAEIRLAG 248 (296)
T ss_pred -------CCHHHHHHHHHHHHh-CC--CCEEEeeeeEEcCCCccCCCCCCCHHH-HHHHHHHHHHHCCcceEEEeC
Confidence 123445555555543 22 222222222 122211 111112333 336677778888887776654
No 163
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=56.42 E-value=97 Score=32.82 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHcCCEEEE-ecCCCCCCCCCCCCCCCCCCCCCCC------hhhHHHHHHHHHHHHHHhcCC-CceeE
Q 010600 266 SSKVLDNAFDWAEKYGVKVIV-DLHAAPGSQNGNEHSATRDGFQEWG------DSNVADTVAVIDFLAARYANR-PSLAA 337 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VIL-DlH~~pg~qng~~~sg~~~g~~~W~------~~~~~~~~~~w~~lA~ryk~~-~~V~g 337 (506)
.+.+.|++++....+|+-.|. +||.-. -++. .| .|. ....+....+++.+..||.-. .....
T Consensus 38 ~~t~~d~i~d~~~~~~~~~ie~~l~~~~-l~~~-~~--------~wq~n~~~~~~~~dl~~~fl~h~~~~vg~e~v~kw~ 107 (428)
T COG3664 38 PFTYIDEIIDTLLDLGLDLIELFLIWNN-LNTK-EH--------QWQLNVDDPKSVFDLIAAFLKHVIRRVGVEFVRKWP 107 (428)
T ss_pred ChHHHHHHHHHHHHhccHHHHHhhcccc-hhhh-hh--------hcccccCCcHhHHHHHHHHHHHHHHHhChhheeecc
Confidence 357889999999988854433 334211 0110 00 232 134566778888888888744 36688
Q ss_pred EEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCChhhhhcccCCCCcEEEEEEeeccCCCCCCCCch
Q 010600 338 IELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNV 417 (506)
Q Consensus 338 ~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~ 417 (506)
++..|||... .+...+.+.|...+. +..|. |=+++.|..-....+.+ ..+.-.-++.|.|..=..+++....
T Consensus 108 f~~~~~pn~~-ad~~eyfk~y~~~a~---~~~p~--i~vg~~w~~e~l~~~~k--~~d~idfvt~~a~~~~av~~~~~~~ 179 (428)
T COG3664 108 FYSPNEPNLL-ADKQEYFKLYDATAR---QRAPS--IQVGGSWNTERLHEFLK--KADEIDFVTELANSVDAVDFSTPGA 179 (428)
T ss_pred eeecCCCCcc-cchHHHHHHHHhhhh---ccCcc--eeeccccCcHHHhhhhh--ccCcccceeecccccccccccCCCc
Confidence 9999999864 333344444444333 55553 33344343222233333 2344455677777642122332222
Q ss_pred hc--------hHHHHHHhhhhhHHHHHhcC-CCcEEEEecCCCCCCCCCCHHH-H-HHHHHHHHHHHhcCCCcEEEEecc
Q 010600 418 QQ--------NIDYVNNQRASDLGAVTTSN-GPLTFVGEWTCEWNVKDASKQD-Y-QRFANAQLDVYGRATFGWAYWAHK 486 (506)
Q Consensus 418 ~~--------~i~~i~~~~~~~~~~~~~~~-gp~v~vGEfg~~~~~~~~~~~~-~-~~~~~~q~~~~~~~~~Gw~~W~~k 486 (506)
+. .+...+ .+...+ ...+ +.|.++.||............. + ..|+..++.-....-.+..||++.
T Consensus 180 ~~~~l~~~~~~l~~~r-~~~d~i---~~~~~~~pl~~~~wntlt~~~~~~n~sy~raa~i~~~Lr~~g~~v~a~~yW~~s 255 (428)
T COG3664 180 EEVKLSELKRTLEDLR-GLKDLI---QHHSLGLPLLLTNWNTLTGPREPTNGSYVRAAYIMRLLREAGSPVDAFGYWTNS 255 (428)
T ss_pred hhhhhhhhhhhhhHHH-HHHHHH---HhccCCCcceeecccccCCCccccCceeehHHHHHHHHHhcCChhhhhhhhhcc
Confidence 11 111111 111222 2222 4468999997654322111111 1 245444443333334456688776
Q ss_pred c
Q 010600 487 C 487 (506)
Q Consensus 487 ~ 487 (506)
.
T Consensus 256 d 256 (428)
T COG3664 256 D 256 (428)
T ss_pred c
Confidence 5
No 164
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=56.02 E-value=16 Score=37.41 Aligned_cols=64 Identities=31% Similarity=0.397 Sum_probs=42.2
Q ss_pred cccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 225 DSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 225 ~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
...++++.++.|++.|++ +||-++...+.+..-..... ....+.+.++++.++++||.|..++-
T Consensus 112 pd~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 112 PEFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred CCcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 346789999999999988 35555544332210000011 12567788899999999999888764
No 165
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.42 E-value=23 Score=34.99 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
+.-++..+.+|.+.||+| ++.....+.. +...+...+.|+++++.|+++||++.|-.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLA-GYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHhCCCEEEEC-Cccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 566777889999999986 2211111111 1112345678889999999999999998873
No 166
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=55.39 E-value=29 Score=36.05 Aligned_cols=62 Identities=11% Similarity=-0.077 Sum_probs=44.7
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
+++|++...+.|+..|++.++-........-..-.+..++.+.++|+.|+++|++|.+.+-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~ 184 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSC 184 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 78999999999999999976532111111111123568899999999999999999866643
No 167
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=55.21 E-value=1.4e+02 Score=28.60 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=77.4
Q ss_pred HHHHHhCCCCEEEeCcCccccc-------C---------CCCCCCCcc-------------chHHHHHHHHHHHHHcCCE
Q 010600 233 FKFLSSNGINAVRIPVGWWIAN-------D---------PTPPKPFVG-------------GSSKVLDNAFDWAEKYGVK 283 (506)
Q Consensus 233 ~~~ia~~G~N~VRIPv~~~~~~-------~---------~~~~~~~~~-------------~~l~~ld~~v~~a~k~Gi~ 283 (506)
+...++.||..|-||+++-.-. + ..++..+++ ..-+-||.+|+.|+..|-.
T Consensus 22 ~~~a~~~gf~~vev~~p~~e~a~~~~~~~~~~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~ai~yAkalgC~ 101 (264)
T KOG4518|consen 22 YGAAASAGFKLVEVSIPYTEPAEKLREAADEYHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTAIEYAKALGCC 101 (264)
T ss_pred HHHHHhCCceEEEecCCCCChHHHHHHhhhcchhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHHHHHHHHhCCc
Confidence 4455788999999999862100 0 112222221 2467799999999999864
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHH
Q 010600 284 VIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYD 363 (506)
Q Consensus 284 VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~ 363 (506)
=| |-..|- ..+|.. . ....+-+.+-++.-|..++.+.-|--+|.+|-- ..+.-...-|+++.+
T Consensus 102 rI---HlmAG~----~k~g~d---~---~~~~~ty~eNlr~AA~~l~~~kligliEPINky----t~PgY~ln~y~~Aa~ 164 (264)
T KOG4518|consen 102 RI---HLMAGI----PKSGDD---L---ENAHQTYSENLRFAAEKLKEHKLIGLIEPINKY----TIPGYHLNNYEDAAD 164 (264)
T ss_pred eE---EEeccC----CCCCch---H---HHHHHHHHHHHHHHHHHhhhhceeeeecchhcc----cCcchhcCCHHHHHH
Confidence 33 322221 111110 0 134445567778888999999988777877732 233445566788888
Q ss_pred HHHhcCCCeEEEE
Q 010600 364 AVRKYTSTAYVIM 376 (506)
Q Consensus 364 aIR~~~p~~~Viv 376 (506)
.+..+..+.+-+.
T Consensus 165 Ilq~v~~~Nlqlq 177 (264)
T KOG4518|consen 165 ILQMVQSNNLQLQ 177 (264)
T ss_pred HHHHhcCCceehh
Confidence 8888887765543
No 168
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=54.91 E-value=18 Score=36.89 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=50.0
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg 293 (506)
+.+-..++|+++|.++|.+=+-| +|+.+...+....+.+.++.+.|++.+|--+|.+-.++.
T Consensus 106 l~~wS~~rike~GadavK~Llyy----~pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~ 167 (324)
T PRK12399 106 LDDWSAKRIKEEGADAVKFLLYY----DVDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDE 167 (324)
T ss_pred cchhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccC
Confidence 44557899999999999996533 455444455668999999999999999999999988764
No 169
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=53.66 E-value=15 Score=40.45 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=42.5
Q ss_pred ccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 224 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 224 w~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
....++++.++.|+++|+|.|=|-+ ..+.+..-..--.....+.+.++++.++++|++|.+||-
T Consensus 200 RPD~i~~e~L~~L~~~G~~rVslGV--QS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM 263 (522)
T TIGR01211 200 RPDYCREEHIDRMLKLGATRVELGV--QTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIM 263 (522)
T ss_pred cCCcCCHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 3456899999999999998555433 322111000000123577888899999999999888775
No 170
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=53.20 E-value=16 Score=36.88 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=43.8
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
+.++++...+.|++.||+.++-........-..-.+..++.+.++|+.|+++|+.|...+-.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~ 142 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC 142 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 68899999999999999966432111111111123457889999999999999999866653
No 171
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=52.91 E-value=3e+02 Score=29.02 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=74.0
Q ss_pred CHHHHHHHHhCCCCEEEeCcC----cccccCCCCCCCCc----cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCC-C
Q 010600 229 TDEDFKFLSSNGINAVRIPVG----WWIANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN-E 299 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~----~~~~~~~~~~~~~~----~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~-~ 299 (506)
.++=++.+|++|+..|=+--- +-++ + +...+|. .-.-+.|.++++.|+++||++-|- |.....-++. .
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw-~-S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y-~S~~DW~~p~y~ 159 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLW-D-SKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLY-HSLFDWFNPLYA 159 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCcccc-C-CCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEE-cCHHHhCCCccc
Confidence 355577789999998876321 1111 1 1111121 114588999999999999999983 3221110000 0
Q ss_pred -CCCCCCCCCCCChhhHHHH---HHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCe-EE
Q 010600 300 -HSATRDGFQEWGDSNVADT---VAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTA-YV 374 (506)
Q Consensus 300 -~sg~~~g~~~W~~~~~~~~---~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~-~V 374 (506)
..........+ +...+.. ..-++.|..+|.. .++=+|.-.+-. ...| -.+++++.||+..|+. -|
T Consensus 160 ~~~~~~~~~~~~-~~~~~y~~~~~~Ql~ELit~Ygp--d~lWfD~~~~~~-----~~~~--~~~~l~~~~~~~qP~~~~v 229 (384)
T smart00812 160 GPTSSDEDPDNW-PRFQEFVDDWLPQLRELVTRYKP--DLLWFDGGWEAP-----DDYW--RSKEFLAWLYNLSPVKDTV 229 (384)
T ss_pred cccccccccccc-hhHHHHHHHHHHHHHHHHhcCCC--ceEEEeCCCCCc-----cchh--cHHHHHHHHHHhCCCCceE
Confidence 00000000111 1223333 5667778888976 444477644211 1222 3567889999999976 23
Q ss_pred EEeCCCC
Q 010600 375 IMSNRLG 381 (506)
Q Consensus 375 iv~~~~~ 381 (506)
++.++++
T Consensus 230 vvn~R~~ 236 (384)
T smart00812 230 VVNDRWG 236 (384)
T ss_pred EEEcccc
Confidence 4455553
No 172
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=52.78 E-value=3e+02 Score=29.73 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=85.5
Q ss_pred HHHHHHHHhCCCCEEEeCcC-------cccccCCCCCCC--------CccchHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVG-------WWIANDPTPPKP--------FVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 294 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~-------~~~~~~~~~~~~--------~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~ 294 (506)
.+-++.++++-+-.+|.|=+ |.....|....| ..+...=-..++++||++.|.-++|-+-- |+
T Consensus 52 kDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~--Gs 129 (501)
T COG3534 52 KDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNL--GS 129 (501)
T ss_pred HHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEec--CC
Confidence 56788899999999999954 333333322111 11222233678999999999877776542 21
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHH--------HHHHHHHHHhcC-CC-ceeEEEeecCCCCC----CCChHHHHHHHHH
Q 010600 295 QNGNEHSATRDGFQEWGDSNVADTV--------AVIDFLAARYAN-RP-SLAAIELINEPLAP----GVALDTLKSYYKA 360 (506)
Q Consensus 295 qng~~~sg~~~g~~~W~~~~~~~~~--------~~w~~lA~ryk~-~~-~V~g~eL~NEP~~~----~~~~~~~~~~~~~ 360 (506)
. | . +....++ ..|..+-....- .| +|--|-|-||-..+ ....+....++.+
T Consensus 130 r------g-v--------d~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e 194 (501)
T COG3534 130 R------G-V--------DEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHKTAPEYGRLANE 194 (501)
T ss_pred c------c-H--------HHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccccccCHHHHHHHHH
Confidence 0 0 0 1111222 245555443322 23 67668899997543 1234455556666
Q ss_pred HHHHHHhcCCCeEEEEeCCCCCCC--hhhh----hcccCCCCcEEEEEEeec
Q 010600 361 GYDAVRKYTSTAYVIMSNRLGPAD--HKEL----LSFASGLSRVVIDVHYYN 406 (506)
Q Consensus 361 ~~~aIR~~~p~~~Viv~~~~~~~~--~~~~----~~~~~~~~nvv~s~H~Y~ 406 (506)
.-++.+=.+|+.-.++.+.-++++ ...| +.. ....-..+|.|+|.
T Consensus 195 ~~k~~k~~d~t~e~~v~g~a~~~n~~~~~W~~~vl~~-~~e~vD~ISlH~Y~ 245 (501)
T COG3534 195 YRKYMKYFDPTIENVVCGSANGANPTDPNWEAVVLEE-AYERVDYISLHYYK 245 (501)
T ss_pred HHHHHhhcCccccceEEeecCCCCCCchHHHHHHHHH-HhhhcCeEEEEEec
Confidence 666666666654444442111111 1111 211 22335789999993
No 173
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=52.76 E-value=27 Score=34.30 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
++-++..+++|...|+++.++.. .....+.......+.|.++.+.|+++|+++.|-.|.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP--AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56778889999999999876421 110111111234577788889999999999998764
No 174
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=52.69 E-value=1.6e+02 Score=25.71 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=50.9
Q ss_pred eeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEec-CCeEEEeecCCCCceEEEeecCCCCCceEE
Q 010600 76 QKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAGYSETFQ 147 (506)
Q Consensus 76 ~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~a~~~~~g~~EtF~ 147 (506)
|.||--..-| .|-..++.-+....|++..++.+.+.||.. .++|+|.+. .+.|-+.. .+..-+.|+
T Consensus 8 ~~~L~I~~dG--~V~Gt~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~---~G~ly~s~-~~~~dC~F~ 74 (123)
T cd00058 8 GFHLQILPDG--TVDGTRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNK---CGKLYGSK-GFTEECLFR 74 (123)
T ss_pred CeEEEEcCCC--cEecccCCCCCCceEEEEECCCCEEEEEEcccceEEEECC---CCCEEECC-CCCCCCEEE
Confidence 5666554333 556666665678899999999999999988 999999987 45677777 888888886
No 175
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=51.61 E-value=2e+02 Score=29.16 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCC
Q 010600 267 SKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 346 (506)
Q Consensus 267 l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~ 346 (506)
.+.+.+-|+.|++.|++|+|.+-...++. ..-.+...+.+++.+..+.+.| .+-|+|+==|.-.
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiGG~~~~~------------~~~~~~~~~~fa~sl~~~~~~~----g~DGiDiD~E~~~ 122 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIGGANGHV------------DLNHTAQEDNFVDSIVAIIKEY----GFDGLDIDLESGS 122 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEeCCCCcc------------ccCCHHHHHHHHHHHHHHHHHh----CCCeEEEecccCC
Confidence 35677888899999999999985332210 0001345566665555555556 3567787777532
Q ss_pred CCCChHHHHHHHHHHHHHHHhcC-CCeEEEEe
Q 010600 347 PGVALDTLKSYYKAGYDAVRKYT-STAYVIMS 377 (506)
Q Consensus 347 ~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~ 377 (506)
.......-..-+.++++.+|+.- ++-+|.+.
T Consensus 123 ~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~A 154 (312)
T cd02871 123 NPLNATPVITNLISALKQLKDHYGPNFILTMA 154 (312)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 11111122333445555566543 33444443
No 176
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=51.33 E-value=21 Score=36.57 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=49.3
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg 293 (506)
+.+-+.++|+++|.++|.+=+-| +|+.+...+....+.+.++.+.|++++|--+|.+-.++.
T Consensus 107 l~~~s~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~ 168 (325)
T TIGR01232 107 LVEWSAKRLKEQGANAVKFLLYY----DVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDD 168 (325)
T ss_pred cccccHHHHHHhCCCeEEEEEEe----CCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 33557899999999999996533 454433455568999999999999999999999988754
No 177
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.96 E-value=3.1e+02 Score=28.51 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCC----C---CCCCC----------CCCCCCCC-hhhHHHHHHHHHHHHH
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNG----N---EHSAT----------RDGFQEWG-DSNVADTVAVIDFLAA 327 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng----~---~~sg~----------~~g~~~W~-~~~~~~~~~~w~~lA~ 327 (506)
..+.+.++|+.|+++||.||..+-. ||.... . ...+. ..+...-. +...+-..++++.+++
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~-PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~ 162 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDM-PGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAE 162 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCC-chhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHH
Confidence 4788999999999999999998742 322100 0 00000 00000000 3445555677788888
Q ss_pred HhcCCCceeEEEeecCCCCCC-------------CCh-HHHHHHHHHHHHHHHhcCCC
Q 010600 328 RYANRPSLAAIELINEPLAPG-------------VAL-DTLKSYYKAGYDAVRKYTST 371 (506)
Q Consensus 328 ryk~~~~V~g~eL~NEP~~~~-------------~~~-~~~~~~~~~~~~aIR~~~p~ 371 (506)
-|...---+|-|=.+.-.... .+. +.+..|.+++.+.|++.+.+
T Consensus 163 lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~ 220 (357)
T cd06563 163 LFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKK 220 (357)
T ss_pred hCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCE
Confidence 776433335544222211100 022 23456788999999987643
No 178
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=50.59 E-value=35 Score=35.67 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=42.9
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
..++|++.+.+.|+..|||.++-........-..-.+..++.+.++++.|+++|+.|.+.+-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 35899999999999999995543211100000011234788899999999999999988764
No 179
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=49.73 E-value=19 Score=35.33 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+++++.+++.|+..|||++.-........-..-.++.++.+.+.++.|+++|+.|.+.+-
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 789999999999999998753211000000011234788899999999999999999984
No 180
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=49.68 E-value=2.2e+02 Score=29.07 Aligned_cols=57 Identities=12% Similarity=0.320 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCEEEeCcC----cccccC--CCC------CCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVG----WWIAND--PTP------PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~----~~~~~~--~~~------~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
++.++.|+..++|.+-+-+. |..-.. |.- .+.| .-+.+.++++.|+++||.||..+-
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y---T~~di~elv~yA~~rgI~vIPEId 89 (311)
T cd06570 21 KRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY---TQEQIREVVAYARDRGIRVVPEID 89 (311)
T ss_pred HHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc---CHHHHHHHHHHHHHcCCEEEEeec
Confidence 45677789999998888652 321111 110 1112 467899999999999999999875
No 181
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.61 E-value=77 Score=31.55 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=40.8
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
.+.++++..++.|+..|||.+.. ..++.+.++++.|+++|+.|.+.+-..
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~a 132 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMAI 132 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 45788999999999999995421 257888999999999999999987654
No 182
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=49.59 E-value=80 Score=31.55 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=38.9
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+.++|++...+.|+..|||-++. ..++.+...++.|+++|+.|.+.+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDAL--------------NDVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecC--------------ChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46889999999999999993311 1268899999999999999988765
No 183
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=48.96 E-value=2.4e+02 Score=28.45 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=37.1
Q ss_pred HHHHHHHhCC--CCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 231 EDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 231 ~d~~~ia~~G--~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
+.++.+++.| +.++=|-..|..... ...-.+++..+.-.+.+++.+++.|++|++-+|.
T Consensus 28 ~~~~~~~~~~iP~d~~~lD~~w~~~~~-~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P 88 (308)
T cd06593 28 EFADGMRERNLPCDVIHLDCFWMKEFQ-WCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINP 88 (308)
T ss_pred HHHHHHHHcCCCeeEEEEecccccCCc-ceeeEECcccCCCHHHHHHHHHHCCCeEEEEecC
Confidence 4455567888 455666666642111 0011233444555789999999999999998873
No 184
>PTZ00333 triosephosphate isomerase; Provisional
Probab=48.57 E-value=2.2e+02 Score=28.28 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
|=....|+++|++.|=|-=+ +.. .+-.+.-+.+.+-+..|.++||.+||..=
T Consensus 79 evS~~mL~d~G~~~viiGHS-----ERR---~~f~Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 79 EISAEMLKDLGINWTILGHS-----ERR---QYFGETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred cCCHHHHHHcCCCEEEECcc-----ccc---CcCCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 34467889999999877321 111 11123347788889999999999999874
No 185
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=48.54 E-value=47 Score=35.88 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=40.6
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
++++.++.|++.|++.|-|.+ ....+..- ..+. ....+.+.++++.++++||.|.+++-
T Consensus 285 ~~~e~l~~l~~aG~~~v~iGi--ES~s~~~L-~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~I 344 (472)
T TIGR03471 285 VDYETLKVMKENGLRLLLVGY--ESGDQQIL-KNIKKGLTVEIARRFTRDCHKLGIKVHGTFI 344 (472)
T ss_pred CCHHHHHHHHHcCCCEEEEcC--CCCCHHHH-HHhcCCCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 689999999999999877755 22211000 0011 12567788899999999999988864
No 186
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=47.99 E-value=41 Score=35.12 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=42.2
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.++|++.+.+.|+..|||.++-........-..-.+..++.+.++|+.|+++|+.|.+.+-
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 5889999999999999997653211000000111234688888999999999999887543
No 187
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.41 E-value=56 Score=32.82 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=64.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
+..+++.+++|+..|=|--+|.........+......-..|.++++.|++.|+.|+|=.|...+.
T Consensus 35 k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~--------------- 99 (273)
T PF10566_consen 35 KRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGG--------------- 99 (273)
T ss_dssp HHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTT---------------
T ss_pred HHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcch---------------
Confidence 46788889999999999888753111111111111223569999999999999999999965432
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCce-eEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 310 WGDSNVADTVAVIDFLAARYANRPSL-AAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~V-~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
...+.++ + .+..-++|++-... +=+|-++- +.....++|+++++.--++ +.+|-+++
T Consensus 100 -~~~~~~~--~-~~~~f~~~~~~Gv~GvKidF~~~------d~Q~~v~~y~~i~~~AA~~--~LmvnfHg 157 (273)
T PF10566_consen 100 -NVANLEK--Q-LDEAFKLYAKWGVKGVKIDFMDR------DDQEMVNWYEDILEDAAEY--KLMVNFHG 157 (273)
T ss_dssp -BHHHHHC--C-HHHHHHHHHHCTEEEEEEE--SS------TSHHHHHHHHHHHHHHHHT--T-EEEETT
T ss_pred -hhHhHHH--H-HHHHHHHHHHcCCCEEeeCcCCC------CCHHHHHHHHHHHHHHHHc--CcEEEecC
Confidence 1011111 1 25555556554311 22455554 2366777887776654442 23444444
No 188
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.41 E-value=20 Score=36.13 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=44.3
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
.+.+++..++.|++.|+|.++-........-..-.+..++.+.++++.|+++|+.|.+.+-.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 36789999999999999976432111100001223568999999999999999999998864
No 189
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=46.66 E-value=49 Score=34.82 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=43.0
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.++|++...+.|+..|||.++-+.......-..-.+..++.+.++++.|+++|+.|.++.
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 488999999999999999765332110000011234578999999999999999998874
No 190
>PRK06256 biotin synthase; Validated
Probab=46.55 E-value=97 Score=31.72 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=69.5
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~ 305 (506)
.++++.++.|+++|++.|=+.+ .. .+.--.... ...++..-++++.+++.||.|-..+- .|. +
T Consensus 149 ~l~~e~l~~LkeaG~~~v~~~l--Et--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl-------g--- 212 (336)
T PRK06256 149 LLTEEQAERLKEAGVDRYNHNL--ET--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGI--IGM-------G--- 212 (336)
T ss_pred cCCHHHHHHHHHhCCCEEecCC--cc--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeE--EeC-------C---
Confidence 3789999999999999665533 21 111000111 13567777889999999998744332 221 0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCC----CChHHHHHHHHHHHHHHHhcCCCeEEEEeCCC
Q 010600 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG----VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 380 (506)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~----~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 380 (506)
++.++..+.+..+.+ .+- .-+.+..++ |.... .+...- .-+.+.+...|-.-|+..|.++++.
T Consensus 213 -------Et~ed~~~~~~~l~~-l~~--~~v~i~~l~-P~pGT~l~~~~~~~~-~e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 213 -------ESLEDRVEHAFFLKE-LDA--DSIPINFLN-PIPGTPLENHPELTP-LECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred -------CCHHHHHHHHHHHHh-CCC--CEEeecccc-cCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCeeEecCch
Confidence 334556666666553 322 212233333 22110 111111 2334567788999999999888544
No 191
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=46.55 E-value=65 Score=36.44 Aligned_cols=121 Identities=21% Similarity=0.306 Sum_probs=67.2
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCc-ccccCCCCCCC---Ccc----chHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGW-WIANDPTPPKP---FVG----GSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~-~~~~~~~~~~~---~~~----~~l~~ld~~v~~a~k~Gi~VILDlH~~pg 293 (506)
.-| +|.+|+|+... +.||+..-||+.. |+-++-..+.. ++. .-.+.|+++- ++.+.|-+|||.|--..
T Consensus 364 cRW-NY~DE~DV~~V-d~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa--~kgRklV~IvDPHIKkD 439 (915)
T KOG1066|consen 364 CRW-NYNDEEDVLTV-DQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLA--SKGRKLVTIVDPHIKKD 439 (915)
T ss_pred ccc-cccchhhhhhh-hcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHH--hcCCceEEEeCcccccC
Confidence 446 67888888765 5689999999863 43332222222 222 2344444442 35678999999995322
Q ss_pred C-----------------CCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHH--HhcCC-CceeEEEeecCCCC
Q 010600 294 S-----------------QNGNEHSATR-DGFQEWGDSNVADTVAVIDFLAA--RYANR-PSLAAIELINEPLA 346 (506)
Q Consensus 294 ~-----------------qng~~~sg~~-~g~~~W~~~~~~~~~~~w~~lA~--ryk~~-~~V~g~eL~NEP~~ 346 (506)
+ .+|.+.-|.+ .|...|.+.......+.|...-+ +|... +++..|.=||||.-
T Consensus 440 ~~Y~v~ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fafd~y~g~t~nl~iWNDMNEPSV 513 (915)
T KOG1066|consen 440 DGYFVHKEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFAFDRYEGSTPNLFIWNDMNEPSV 513 (915)
T ss_pred CCeEEhHHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcccccccCCCCceEEeccCCCccc
Confidence 1 1222222221 33333332223344566665433 55554 46888999999974
No 192
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=45.93 E-value=2.2e+02 Score=29.08 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~----~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~ 305 (506)
.+.++++++.|+|+-=. -.-.||.- -++|.+..++.|.++++.|++.|+..+.-+| ||... .
T Consensus 18 ~~l~~f~~~~kmN~YiY----APKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~ais--Pg~~~----~---- 83 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIY----APKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAIS--PGLDI----C---- 83 (306)
T ss_dssp HHHHHHHHHTT--EEEE------TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEB--GTTT----------
T ss_pred HHHHHHHHHcCCceEEE----CCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEEC--ccccc----c----
Confidence 46788999999996432 00011110 1356677899999999999999999999999 44211 0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCC
Q 010600 306 GFQEWGDSNVADTVAVIDFLAARYANR 332 (506)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~ 332 (506)
+ ...+....+...+.+-|.--
T Consensus 84 ----~--s~~~d~~~L~~K~~ql~~lG 104 (306)
T PF07555_consen 84 ----Y--SSEEDFEALKAKFDQLYDLG 104 (306)
T ss_dssp ----T--SHHHHHHHHHHHHHHHHCTT
T ss_pred ----c--CcHHHHHHHHHHHHHHHhcC
Confidence 1 24456666777777666543
No 193
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=45.79 E-value=43 Score=33.64 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
++-|+.++++|+.-|.|-+ ++. -.+...+..+++++.|.+|+|- ||+|..
T Consensus 109 ~~~f~~~~~~Gv~GvKidF-----~~~-----d~Q~~v~~y~~i~~~AA~~~Lm--vnfHg~ 158 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF-----MDR-----DDQEMVNWYEDILEDAAEYKLM--VNFHGA 158 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------SS-----TSHHHHHHHHHHHHHHHHTT-E--EEETTS
T ss_pred HHHHHHHHHcCCCEEeeCc-----CCC-----CCHHHHHHHHHHHHHHHHcCcE--EEecCC
Confidence 7889999999999999844 322 1245789999999999999865 588965
No 194
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=45.56 E-value=31 Score=39.08 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCEEEe-CcCcccccCC-------CCCCCCcc--chHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRI-PVGWWIANDP-------TPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRI-Pv~~~~~~~~-------~~~~~~~~--~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.+-+..++++|+.++=+ |+. ..... ..+...++ +..+.|.+++..++++||.+|+|+-
T Consensus 22 ~~~l~yl~~LGIShLY~SPIf--tA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIV 89 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIF--TARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIV 89 (889)
T ss_pred HHhhHHHHhcCchheeccchh--hcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEec
Confidence 35588899999999877 331 11111 11112222 5789999999999999999999983
No 195
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=45.48 E-value=3.1e+02 Score=26.97 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=72.3
Q ss_pred HHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEW 310 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W 310 (506)
=..+.|++.|++.|=|-=+ +.. .+-...-+.+.+-+..|.++||.+||..=..-. .+
T Consensus 75 vS~~mL~d~G~~~viiGHS-----ERR---~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~---------~r------ 131 (242)
T cd00311 75 ISAEMLKDAGAKYVIIGHS-----ERR---QYFGETDEDVAKKVKAALEAGLTPILCVGETLE---------ER------ 131 (242)
T ss_pred CCHHHHHHcCCCEEEeCcc-----ccc---CcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---------HH------
Confidence 3467789999999987321 111 122334577888899999999999998642210 00
Q ss_pred ChhhHHHHH-HHHHHHHHHhcC----CCceeEEEeecCCCCC-----CCChHHHHHHHHHHHHHHHhcC----CCeEEEE
Q 010600 311 GDSNVADTV-AVIDFLAARYAN----RPSLAAIELINEPLAP-----GVALDTLKSYYKAGYDAVRKYT----STAYVIM 376 (506)
Q Consensus 311 ~~~~~~~~~-~~w~~lA~ryk~----~~~V~g~eL~NEP~~~-----~~~~~~~~~~~~~~~~aIR~~~----p~~~Viv 376 (506)
...++. -+.+++..-.++ .+.+++|| |.+. ..+++...+..+.+-+.+++.. ++..|+.
T Consensus 132 ---~~~~~~~~~~~Ql~~~l~~~~~~~~~iIAYE----PvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlY 204 (242)
T cd00311 132 ---EAGKTEEVVAAQLAAVLAGVEDLAPVVIAYE----PVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILY 204 (242)
T ss_pred ---HcCCHHHHHHHHHHHHHhcchhhcCeEEEEC----CHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEE
Confidence 000111 122233332222 35677774 7541 2345556666655556665543 4677888
Q ss_pred eCCCCCCChhhhhcc
Q 010600 377 SNRLGPADHKELLSF 391 (506)
Q Consensus 377 ~~~~~~~~~~~~~~~ 391 (506)
++.-...+...+...
T Consensus 205 GGSV~~~N~~~l~~~ 219 (242)
T cd00311 205 GGSVNPENAAELLAQ 219 (242)
T ss_pred CCCCCHHHHHHHhcC
Confidence 765543344444443
No 196
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=45.35 E-value=2.5e+02 Score=27.40 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecC-CCC
Q 010600 268 KVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE-PLA 346 (506)
Q Consensus 268 ~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NE-P~~ 346 (506)
..+...++.|+++|++|++-+.....+. .+ ...=.+..++.+++-+-.+.++|. +-|+||==| |..
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~----~~-----~~~~~~~~r~~fi~~lv~~~~~~~----~DGIdiDwE~~~~ 112 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPE----FT-----AALNDPAKRKALVDKIINYVVSYN----LDGIDVDLEGPDV 112 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCc----ch-----hhhcCHHHHHHHHHHHHHHHHHhC----CCceeEEeeccCc
Confidence 4677889999999999999886421110 00 000013556666655555555663 234444444 321
Q ss_pred CCCChHHHHHHHHHHHHHHHhc
Q 010600 347 PGVALDTLKSYYKAGYDAVRKY 368 (506)
Q Consensus 347 ~~~~~~~~~~~~~~~~~aIR~~ 368 (506)
..+.+..+.+++.+++++.
T Consensus 113 ---~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 113 ---TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred ---cHhHHHHHHHHHHHHHhhc
Confidence 2456777777777777664
No 197
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=45.02 E-value=1.1e+02 Score=30.66 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=49.5
Q ss_pred hHHHHhhccccCCHHHHHHHHhCCCCEEEeCcCccc-ccCCC-----C------CCCCccchHHHHHHHHHHHHHcCCEE
Q 010600 217 PQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWI-ANDPT-----P------PKPFVGGSSKVLDNAFDWAEKYGVKV 284 (506)
Q Consensus 217 ~~~~~~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~-~~~~~-----~------~~~~~~~~l~~ld~~v~~a~k~Gi~V 284 (506)
...+.+.|..++..+....+..-|+=++++.=+... .++.. . ......+.++.|++.++.+++.+.+|
T Consensus 137 ~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v 216 (296)
T cd00842 137 YDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKV 216 (296)
T ss_pred HHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 345566787788777776666666544442111110 11110 0 01112468999999999999999999
Q ss_pred EEecCCCCCC
Q 010600 285 IVDLHAAPGS 294 (506)
Q Consensus 285 ILDlH~~pg~ 294 (506)
+|=.|..|+.
T Consensus 217 ~I~~HiPp~~ 226 (296)
T cd00842 217 WIIGHIPPGV 226 (296)
T ss_pred EEEeccCCCC
Confidence 9999998864
No 198
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.23 E-value=31 Score=34.17 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 309 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~ 309 (506)
+.-++..+++|++.|++..+.... .+.+.......+.+.++++.|+++||++.|..|..+.. +.
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~-----~~-------- 151 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGN-----EI-------- 151 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC-----CC--------
Confidence 567788899999999996654211 01111123457888889999999999999988854321 00
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCce-eEEEeecCCCCC--CCChHHHHHHHHHHHHHH
Q 010600 310 WGDSNVADTVAVIDFLAARYANRPSL-AAIELINEPLAP--GVALDTLKSYYKAGYDAV 365 (506)
Q Consensus 310 W~~~~~~~~~~~w~~lA~ryk~~~~V-~g~eL~NEP~~~--~~~~~~~~~~~~~~~~aI 365 (506)
....+.+.++++.+ ...|++ +-+|+.|=-... ..+++.+..++++..+.|
T Consensus 152 --~~t~~~~~~li~~v----~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i 204 (279)
T cd00019 152 --GSSFEELKEIIDLI----KEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVI 204 (279)
T ss_pred --CCCHHHHHHHHHhc----CCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHh
Confidence 02234455555554 224544 458887721110 012345666666655544
No 199
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.99 E-value=2.8e+02 Score=27.17 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=55.3
Q ss_pred HHHhCCCCEEEeCcCc-c--cccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q 010600 235 FLSSNGINAVRIPVGW-W--IANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG 311 (506)
Q Consensus 235 ~ia~~G~N~VRIPv~~-~--~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~ 311 (506)
.+++.|+...-+.++. . .+..+++ ...+..++.+.++++.|++.|..+|. ++..... .. . . .
T Consensus 60 ~l~~~Gl~i~~~~~~~~~~~~~~~~d~--~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~~~------~~-~-~----~ 124 (284)
T PRK13210 60 AIYETGVRIPSMCLSGHRRFPFGSRDP--ATRERALEIMKKAIRLAQDLGIRTIQ-LAGYDVY------YE-E-K----S 124 (284)
T ss_pred HHHHcCCCceEEecccccCcCCCCCCH--HHHHHHHHHHHHHHHHHHHhCCCEEE-ECCcccc------cc-c-c----c
Confidence 3567788766543221 1 1111111 11235789999999999999999986 3321100 00 0 0 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCceeEEEeec
Q 010600 312 DSNVADTVAVIDFLAARYANRPSLAAIELIN 342 (506)
Q Consensus 312 ~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~N 342 (506)
+...+.+++.++.+++..+.+.-.+++|.+.
T Consensus 125 ~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 125 EETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 2456778888888888887777777788653
No 200
>PRK09936 hypothetical protein; Provisional
Probab=43.43 E-value=1.7e+02 Score=29.69 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=73.4
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCC-
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ- 308 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~- 308 (506)
++-++.++..||+++=|-.. ..... .|. +.--.|-+.++.|++.||+|+|-|+..|..- .+- ..++..
T Consensus 41 q~~~~~~~~~G~~tLivQWt---~yG~~---~fg-~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~---q~~-~~d~~~~ 109 (296)
T PRK09936 41 QGLWSQLRLQGFDTLVVQWT---RYGDA---DFG-GQRGWLAKRLAAAQQAGLKLVVGLYADPEFF---MHQ-KQDGAAL 109 (296)
T ss_pred HHHHHHHHHcCCcEEEEEee---eccCC---Ccc-cchHHHHHHHHHHHHcCCEEEEcccCChHHH---HHH-hcCchhH
Confidence 67788999999999987542 22111 221 2345678889999999999999999887531 010 011110
Q ss_pred -CCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCC-ChHHHHHHHHHHHHHHHhcC-CCeEEEEeCCC
Q 010600 309 -EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL 380 (506)
Q Consensus 309 -~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~-p~~~Viv~~~~ 380 (506)
.|-.....+.++.++.+.++..-. |-||=+==|+..... +.+....++..+-+.++..+ +..+|-|+..+
T Consensus 110 ~~yl~~~l~~~~~qa~~~~~~~~~~--v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISay~ 182 (296)
T PRK09936 110 ESYLNRQLGASLQQARLWSAAWGVP--VDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHISAFF 182 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC--CCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEeec
Confidence 011122233334444444433332 366777777764322 33333333333333333322 35677777543
No 201
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=43.15 E-value=2.8e+02 Score=27.35 Aligned_cols=148 Identities=9% Similarity=0.007 Sum_probs=79.3
Q ss_pred HHHhCCCCEEEeCcCcccccCCCCCC-CCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChh
Q 010600 235 FLSSNGINAVRIPVGWWIANDPTPPK-PFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDS 313 (506)
Q Consensus 235 ~ia~~G~N~VRIPv~~~~~~~~~~~~-~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~ 313 (506)
.+++.|+...-+..+-+.......+. ...+..++.+.++++.|++.|..+|+ ++... . ..+ .. .+.
T Consensus 60 ~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~---~---~~~---~~---~~~ 126 (279)
T TIGR00542 60 AIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQ-LAGYD---V---YYE---EH---DEE 126 (279)
T ss_pred HHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEE-ecCcc---c---ccC---cC---CHH
Confidence 35677887665543211000000001 12234688999999999999999885 33210 0 000 00 024
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC-CCeEEEEeCCC---CCCChhhhh
Q 010600 314 NVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKELL 389 (506)
Q Consensus 314 ~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~~~~---~~~~~~~~~ 389 (506)
..+.+++.++.+++.-+.....+++|.++.|.. .+. .++.+.|+.++ |+.-+.+.-+. ...+.....
T Consensus 127 ~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~--~t~-------~~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~~~i 197 (279)
T TIGR00542 127 TRRRFREGLKEAVELAARAQVTLAVEIMDTPFM--SSI-------SKWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQMEL 197 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchh--cCH-------HHHHHHHHHcCCCceEEEeCcChhhhccCCHHHHH
Confidence 567788889999988888888889997655542 122 23444556665 44444443211 112222222
Q ss_pred cccCCCCcEEEEEEeecc
Q 010600 390 SFASGLSRVVIDVHYYNL 407 (506)
Q Consensus 390 ~~~~~~~nvv~s~H~Y~~ 407 (506)
. ....-+.-+|.-..
T Consensus 198 ~---~~~~~i~~vHikD~ 212 (279)
T TIGR00542 198 Q---LGIDKIVAIHLKDT 212 (279)
T ss_pred H---HhhhhEEEEEeCCC
Confidence 1 12345778887653
No 202
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=43.10 E-value=1.1e+02 Score=31.01 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCC
Q 010600 271 DNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV 349 (506)
Q Consensus 271 d~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~ 349 (506)
.++++.|+++|++|++-+....+. ++. +. .. ...-. +..++++++-+..++++|+= -|++|==|+.. ..
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~--~~~-~~-~~-~~~l~~~~~r~~fi~~iv~~l~~~~~----DGidiDwE~~~-~~ 117 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNG--NFD-SE-LA-HAVLSNPEARQRLINNILALAKKYGY----DGVNIDFENVP-PE 117 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCC--CCC-HH-HH-HHHhcCHHHHHHHHHHHHHHHHHhCC----CcEEEecccCC-HH
Confidence 578999999999999998754311 000 00 00 00000 34556677666666677743 23444334432 22
Q ss_pred ChHHHHHHHHHHHHHHHhcC
Q 010600 350 ALDTLKSYYKAGYDAVRKYT 369 (506)
Q Consensus 350 ~~~~~~~~~~~~~~aIR~~~ 369 (506)
+.+.+..+.+++.+++++.+
T Consensus 118 d~~~~~~fl~~lr~~l~~~~ 137 (313)
T cd02874 118 DREAYTQFLRELSDRLHPAG 137 (313)
T ss_pred HHHHHHHHHHHHHHHhhhcC
Confidence 45567788888888887654
No 203
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=43.04 E-value=2.8e+02 Score=25.87 Aligned_cols=122 Identities=10% Similarity=0.091 Sum_probs=68.4
Q ss_pred hccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCC
Q 010600 223 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 302 (506)
Q Consensus 223 hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg 302 (506)
+|..-|+..|++.+|+.|+..|=|-+.. . ..+.. ..++.=++.|++.||.|=+ .| .....+
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikate-----G---~~~~D---~~~~~n~~~A~~aGl~vG~-Yh-f~~~~~------ 68 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLTE-----G---TTYRN---PYAASQIANAKAAGLKVSA-YH-YAHYTS------ 68 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEcC-----C---CCccC---hHHHHHHHHHHHCCCeeEE-EE-EEecCC------
Confidence 4555677789999999998844332221 1 11211 3467788999999997622 22 110000
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcCC-CceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 303 TRDGFQEWGDSNVADTVAVIDFLAARYANR-PSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 303 ~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~-~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
. +..+++...+++.+. .+.-. +.++.+|+=..+. ...+.++.++.++.|++.+-..++|..
T Consensus 69 -----~---~~a~~eA~~f~~~~~-~~~~~~~~~~~lD~E~~~~-----~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 69 -----A---ADAQAEARYFANTAK-SLGLSKNTVMVADMEDSSS-----SGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred -----h---HHHHHHHHHHHHHHH-HcCCCCCCceEEEeecCCC-----cchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 0 133444555666653 33222 2334456433221 346778888889999998765555554
No 204
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=42.92 E-value=2.3e+02 Score=28.19 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCC---EEEEecCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGV---KVIVDLHAAPGSQNGNEHSATRDG 306 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi---~VILDlH~~pg~qng~~~sg~~~g 306 (506)
++.+..+++.|+-.|=++..- ... |. -.+..++.+.+.++.|.++|| .+|||.-..|-+.+
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~----~g~-P~-t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~---------- 169 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDD----TGI-PK-DAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAA---------- 169 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCC----CCC-CC-CHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCC----------
Confidence 456777889999988876431 111 11 123468889999999999999 89999665432100
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 307 FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 307 ~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
....-.+++.++.+.+.|.+.|.++| +-|=-.
T Consensus 170 -----~~~~~~~l~~i~~l~~~~pg~p~l~G--~Sn~Sf 201 (261)
T PRK07535 170 -----QDAGPEVLETIRRIKELYPKVHTTCG--LSNISF 201 (261)
T ss_pred -----hHHHHHHHHHHHHHHHhCCCCCEEEE--eCCCcc
Confidence 02233556777888887777787766 445433
No 205
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=42.77 E-value=41 Score=33.09 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
++.++..+.+|..+|+++.+.- .... ..+...+...+.|+++.+.|+++||++.+..|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~-~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHA-GYLT-PPNVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 5677888999999999954321 1111 111122346778899999999999999988774
No 206
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=42.29 E-value=80 Score=32.66 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEe
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILD 287 (506)
-.|.++.+.+.++|.+.|++-++-=..-....-....-..+..+-++.+.++++++.||.|
T Consensus 158 V~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 158 VVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred ccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 4689999999999999999986531111100000000137899999999999999999987
No 207
>PRK14567 triosephosphate isomerase; Provisional
Probab=42.17 E-value=3.6e+02 Score=26.80 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
=....|++.|++.|=|--+ +.. .+-.+.-+.+.+-+..|.++||.+|+..=
T Consensus 76 vS~~mLkd~G~~yviiGHS-----ERR---~~f~Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 76 ISARMLEDIGCDYLLIGHS-----ERR---SLFAESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CCHHHHHHcCCCEEEECcc-----ccc---CccCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 3467789999999877321 111 12223445677788899999999999874
No 208
>PLN02449 ferrochelatase
Probab=41.65 E-value=1.8e+02 Score=31.65 Aligned_cols=143 Identities=18% Similarity=0.274 Sum_probs=83.1
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEe-CcC--cccc------------c--CC---CCC----CCC--ccchHHHHHHHHH
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRI-PVG--WWIA------------N--DP---TPP----KPF--VGGSSKVLDNAFD 275 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRI-Pv~--~~~~------------~--~~---~~~----~~~--~~~~l~~ld~~v~ 275 (506)
.||..+ +++-++.|++.|++.|-+ |+- |-.. . .+ ... ..| .+++++.+-+.|.
T Consensus 187 RY~~P~-iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~ 265 (485)
T PLN02449 187 RYWHPF-TEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYVKAMADLIK 265 (485)
T ss_pred hcCCCC-HHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEEeccccCChHHHHHHHHHHH
Confidence 467655 478899999999997764 542 1000 0 00 000 001 2345555555554
Q ss_pred HH-HH----cCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcC----CCceeEEEeecCCCC
Q 010600 276 WA-EK----YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN----RPSLAAIELINEPLA 346 (506)
Q Consensus 276 ~a-~k----~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~----~~~V~g~eL~NEP~~ 346 (506)
.+ .+ .+..+++..|..|-+.- +.. | +.+.++..+..+.|+++... .+..++|+----|.
T Consensus 266 ~~l~~~~~~~~~~LlFSAHGlP~~~v--~~~----G-----DpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~- 333 (485)
T PLN02449 266 KELAKFSDPEEVHIFFSAHGVPVSYV--EEA----G-----DPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPV- 333 (485)
T ss_pred HHHHhccCcCCcEEEEecCCChhhhh--hhc----C-----CChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCC-
Confidence 32 22 24789999999986411 000 1 24567777888888888754 34567777522232
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCC
Q 010600 347 PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 382 (506)
Q Consensus 347 ~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~ 382 (506)
+-+..+.++.+..+.+.+-++++++.-++-+
T Consensus 334 -----eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvS 364 (485)
T PLN02449 334 -----EWLKPYTDETIVELGKKGVKSLLAVPISFVS 364 (485)
T ss_pred -----CCCCCCHHHHHHHHHHcCCCeEEEECCcccc
Confidence 2345566677777777777788888866653
No 209
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=41.61 E-value=2.1e+02 Score=24.90 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=43.3
Q ss_pred cCceeeEeeeeceeEEEEecCCCceEEecCCCCCCcc-eEEEEeeCC-ceEEEEec---CCeEEEeecCCCCceEEEeec
Q 010600 64 DGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWE-TFRLWRVNE-TFYNFRVN---NKQFIGLENQGQGNGLVAVSN 138 (506)
Q Consensus 64 ~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we-~f~~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~~a~~~ 138 (506)
+...|.||++..++|||-..-| .|.+.+ .. .-| .|+ -.+.+ +.-.+++. .+-||.++.. |.+--+.++
T Consensus 38 ~~g~v~i~~v~s~~YLCmn~~G--~ly~s~-~~-~~dC~F~-E~~~~n~Y~~y~S~~~~~~~ylal~~~--G~~rr~~~~ 110 (123)
T cd00058 38 AVGVVSIKGVASCRYLCMNKCG--KLYGSK-GF-TEECLFR-EELLENNYNTYASAKYRRRWYLALNKK--GRPRRGQLT 110 (123)
T ss_pred CCCEEEEEEcccceEEEECCCC--CEEECC-CC-CCCCEEE-EEEccCCcEEEEEcccCCCcEEEECCC--CCCcccccc
Confidence 4578999999999999999876 455554 22 233 343 23332 33344444 3689999865 444555554
Q ss_pred CC
Q 010600 139 TA 140 (506)
Q Consensus 139 ~~ 140 (506)
.+
T Consensus 111 ~~ 112 (123)
T cd00058 111 KK 112 (123)
T ss_pred CC
Confidence 44
No 210
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=41.09 E-value=44 Score=35.29 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=40.6
Q ss_pred hhccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 222 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 222 ~hw~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+|+...+.+.-++..+++|++++|| +.+.-| ..-++.+++.++++|..|...+-
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRi---FDAlND-----------~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRI---FDALND-----------VRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEe---chhccc-----------hhHHHHHHHHHHhcCceeEEEEE
Confidence 5777777788888889999999998 222211 24588999999999998876554
No 211
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=40.57 E-value=35 Score=34.12 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=40.7
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.+.+++.+++.|++.|||.++-...........-.+..++.+.++++.|+++|+.|.+..
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 139 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDA 139 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeE
Confidence 456788999999999999664211100000011124578899999999999999998853
No 212
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=40.26 E-value=3.6e+02 Score=26.43 Aligned_cols=118 Identities=10% Similarity=0.051 Sum_probs=67.7
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecC
Q 010600 264 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 343 (506)
Q Consensus 264 ~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NE 343 (506)
+..++.+++.++.|++.|..+|. ++..+.. . + .. .+...+.+++.++.+++.-+.+...+++|..+.
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~-~~~~~~~---~---~----~~--~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~ 161 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQ-LAGYDVY---Y---E----QA--NNETRRRFIDGLKESVELASRASVTLAFEIMDT 161 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-ECCcccc---c---c----cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCC
Confidence 34688999999999999999876 4422100 0 0 00 024556777888888887777777788886643
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcC-CCeEEEEeCCC---CCCChhhhhcccCCCCcEEEEEEeec
Q 010600 344 PLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKELLSFASGLSRVVIDVHYYN 406 (506)
Q Consensus 344 P~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~~~~---~~~~~~~~~~~~~~~~nvv~s~H~Y~ 406 (506)
+.. .+ ..++.+.|++++ |+.-+++..+. ...+...... ....-+..+|.-.
T Consensus 162 ~~~--~~-------~~~~~~ll~~v~~~~lgl~~D~~h~~~~~~~~~~~i~---~~~~~i~~vHikD 216 (283)
T PRK13209 162 PFM--NS-------ISKALGYAHYLNSPWFQLYPDIGNLSAWDNDVQMELQ---AGIGHIVAFHVKD 216 (283)
T ss_pred ccc--CC-------HHHHHHHHHHhCCCccceEeccchHHHhcCCHHHHHH---hCcCcEEEEEecc
Confidence 321 12 234566677766 44445544211 1112222221 2334577788764
No 213
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=40.08 E-value=3.8e+02 Score=26.42 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=34.3
Q ss_pred HHHHHHhCCC--CEEEeCcCcccccCCCCCC--CCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 232 DFKFLSSNGI--NAVRIPVGWWIANDPTPPK--PFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 232 d~~~ia~~G~--N~VRIPv~~~~~~~~~~~~--~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.++.+++.|+ .++=|-..|... ...- .+++..+.-..++|+.+++.|++|++.+|
T Consensus 29 ~~~~~~~~~iP~d~~~lD~~~~~~---~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 29 VIDGMRENDIPLDGFVLDDDYTDG---YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred HHHHHHHcCCCccEEEECcccccC---CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC
Confidence 3444556554 355554444321 1112 34445566678999999999999999887
No 214
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=39.78 E-value=3.6e+02 Score=26.05 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=71.8
Q ss_pred HHHHH-HHHhCCCCEEEe--CcCcccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCC
Q 010600 230 DEDFK-FLSSNGINAVRI--PVGWWIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 303 (506)
Q Consensus 230 e~d~~-~ia~~G~N~VRI--Pv~~~~~~~~~---~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~ 303 (506)
.++++ .+++.|+...=+ |.+-|...+.. .+++. +...+.++++++.|++.|..+|. ++. |.. .+.
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~a~~lg~~~i~-~~~--g~~-----~~~ 111 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGRE-EEFREGVALAIAYARALGCPQVN-CLA--GKR-----PAG 111 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccH-HHHHHHHHHHHHHHHHhCCCEEE-ECc--CCC-----CCC
Confidence 34444 456888875543 43323211100 01111 23468899999999999999875 332 210 000
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC-CCeEEEEe
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMS 377 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~ 377 (506)
... +...+.+++.++.+++.-++..-.+++|..|=+..+. .+-.-.+++.+.|++++ |+.-+.+.
T Consensus 112 --~~~---~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~----~~l~t~~~~~~li~~v~~~~~~i~~D 177 (254)
T TIGR03234 112 --VSP---EEARATLVENLRYAADALDRIGLTLLIEPINSFDMPG----FFLTTTEQALAVIDDVGRENLKLQYD 177 (254)
T ss_pred --CCH---HHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCC----ChhcCHHHHHHHHHHhCCCCEeEeee
Confidence 000 2445667788888887766666678888665332111 12234566777788776 45555554
No 215
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=39.11 E-value=49 Score=28.59 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCCC
Q 010600 270 LDNAFDWAEKYGVKVIVDLHAAPGSQN 296 (506)
Q Consensus 270 ld~~v~~a~k~Gi~VILDlH~~pg~qn 296 (506)
++++++..+++|+.++||+-..|.|++
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~ 28 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRK 28 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCC
Confidence 688999999999999999999998864
No 216
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=39.00 E-value=34 Score=34.40 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=44.4
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.+++|++...+.|+..|-|.++-........-..-.+..++.+.++++.|+++|++|.+.+
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5689999999999999998765321111111112235689999999999999999998877
No 217
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=37.07 E-value=60 Score=26.93 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=47.3
Q ss_pred hHHHHHHH---HHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeec
Q 010600 266 SSKVLDNA---FDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 342 (506)
Q Consensus 266 ~l~~ld~~---v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~N 342 (506)
+++.|.+. ++..++.+++|++|.++-.+ ..++..|.+++.- .+ +++-.
T Consensus 3 Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~-------------------------~~~~~~ll~~lg~--~~--~~~n~ 53 (104)
T PF02879_consen 3 YIESLLSFIDILEAIKKSGLKIVVDCMNGAG-------------------------SDILPRLLERLGC--DV--IELNC 53 (104)
T ss_dssp HHHHHHHTSCHHHHHHHTTCEEEEE-TTSTT-------------------------HHHHHHHHHHTTC--EE--EEESS
T ss_pred HHHHHhhhccchhhcccCCCEEEEECCCCHH-------------------------HHHHHHHHHHcCC--cE--EEEec
Confidence 44455554 34678999999999885432 1356677776644 22 34444
Q ss_pred CCCCC--C-CChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 343 EPLAP--G-VALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 343 EP~~~--~-~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
+|... . ..++-..+..+.+.+.+++.+.+.-+.+.
T Consensus 54 ~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~~D 91 (104)
T PF02879_consen 54 DPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIAFD 91 (104)
T ss_dssp S-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEEE-
T ss_pred ccccccccccccccccchhHHHHHHhhccCceEEEEEC
Confidence 45431 1 11111126777888889988887666654
No 218
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.06 E-value=3.8e+02 Score=26.49 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=68.4
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHH-------HHHHHHHHHcCCEEE---EecCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVL-------DNAFDWAEKYGVKVI---VDLHAAPGSQNGNE 299 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~l-------d~~v~~a~k~Gi~VI---LDlH~~pg~qng~~ 299 (506)
++-+...|+.||+.|-+.|.- . ...|.+| -.+++.+.++|+.+- |.-|. ..
T Consensus 21 ~erl~~AK~~GFDFvEmSvDE------s------DeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHR-------Rf 81 (287)
T COG3623 21 LERLALAKELGFDFVEMSVDE------S------DERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHR-------RF 81 (287)
T ss_pred HHHHHHHHHcCCCeEEEeccc------h------HHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhc-------cC
Confidence 678999999999999986631 0 0123333 357788999998761 11221 01
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHH---HHHHhcCCC-ceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 010600 300 HSATRDGFQEWGDSNVADTVAVIDF---LAARYANRP-SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT 369 (506)
Q Consensus 300 ~sg~~~g~~~W~~~~~~~~~~~w~~---lA~ryk~~~-~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~ 369 (506)
..|+++ +...++..++.++ ||....=.. .+.|||++=||.. .+.-++|.+.+-.+++-..
T Consensus 82 PfGS~D------~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d----~eT~~rFi~g~~~a~~lA~ 145 (287)
T COG3623 82 PFGSKD------EATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD----EETRQRFIEGLKWAVELAA 145 (287)
T ss_pred CCCCCC------HHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC----HHHHHHHHHHHHHHHHHHH
Confidence 111111 3556666666653 565554443 6789999999984 5666777776666666443
No 219
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=37.00 E-value=4e+02 Score=25.87 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
.++..+..+..+++.|++|++.+.....+. ++ . ..=.+...+++++-+..+..+|. +=|+|+==|+.
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~-~~---~-----~~~~~~~~~~fa~~l~~~v~~yg----lDGiDiD~E~~ 115 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGA-GF---A-----NNLSDAAAKAYAKAIVDTVDKYG----LDGVDFDDEYS 115 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCC-Cc---c-----ccCCHHHHHHHHHHHHHHHHHhC----CCceEEeeeec
Confidence 467778888899999999999987432210 10 0 00002445566655555556663 33455544543
Q ss_pred CCCC-C-hHHHHHHHHHHHHHHHhcC-C-CeEEEEe
Q 010600 346 APGV-A-LDTLKSYYKAGYDAVRKYT-S-TAYVIMS 377 (506)
Q Consensus 346 ~~~~-~-~~~~~~~~~~~~~aIR~~~-p-~~~Viv~ 377 (506)
.... + ...-..-+..+++.+|+.- | +.+|.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 116 GYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred ccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 2110 0 0111223345555555443 3 5666665
No 220
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=36.95 E-value=1.5e+02 Score=30.60 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=39.3
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
+.+|++...+.|+..|||.++.. ..+.+.+.++.|++.|+.|.+.+-..
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~a 138 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMMS 138 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 57899999999999999965321 12457889999999999999887643
No 221
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=36.66 E-value=17 Score=39.23 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=32.2
Q ss_pred cCCCcEEEEecCCCCCCC--------CCCHHHHHHHHHHHHHHHhc--CCCcEEEEecccCCCCCC
Q 010600 438 SNGPLTFVGEWTCEWNVK--------DASKQDYQRFANAQLDVYGR--ATFGWAYWAHKCEANHWS 493 (506)
Q Consensus 438 ~~gp~v~vGEfg~~~~~~--------~~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~~~~~Ws 493 (506)
.+.||++|.|.|...... ....+.+++++...+++.++ .-.|.++|++-. +-+|.
T Consensus 353 Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~D-n~Ew~ 417 (455)
T PF00232_consen 353 YGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLD-NFEWA 417 (455)
T ss_dssp HTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB----BGG
T ss_pred cCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeecccc-ccccc
Confidence 444899999999864321 11123456777777777754 456999999976 34444
No 222
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=36.17 E-value=1.5e+02 Score=30.65 Aligned_cols=96 Identities=14% Similarity=-0.010 Sum_probs=57.7
Q ss_pred HHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChH
Q 010600 273 AFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALD 352 (506)
Q Consensus 273 ~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~ 352 (506)
.++.|+|+|++|+-.++..+..+...-+ ..-... +.....+++-+-.||+.|.=+.-. ++.=|.+. .....+
T Consensus 51 ~idaAHknGV~Vlgti~~e~~~~~~~~~--~lL~~~---~~~~~~~a~kLv~lak~yGfDGw~--iN~E~~~~-~~~~~~ 122 (339)
T cd06547 51 WINAAHRNGVPVLGTFIFEWTGQVEWLE--DFLKKD---EDGSFPVADKLVEVAKYYGFDGWL--INIETELG-DAEKAK 122 (339)
T ss_pred HHHHHHhcCCeEEEEEEecCCCchHHHH--HHhccC---cccchHHHHHHHHHHHHhCCCceE--eeeeccCC-cHHHHH
Confidence 4669999999999988754321000000 000000 123346666777788877544433 34444441 123568
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEE
Q 010600 353 TLKSYYKAGYDAVRKYTSTAYVIM 376 (506)
Q Consensus 353 ~~~~~~~~~~~aIR~~~p~~~Viv 376 (506)
.+..|.+.+.+..++..|+..|+-
T Consensus 123 ~l~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 123 RLIAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEE
Confidence 899999999999999988866654
No 223
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=36.15 E-value=1.1e+02 Score=33.16 Aligned_cols=56 Identities=13% Similarity=0.338 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCC--------C-----CCCccc---hHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTP--------P-----KPFVGG---SSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~--------~-----~~~~~~---~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
.+.++.|+...+|++-- +..|... | +.|... .-+-+.++|+.|+-+||+|+..+-.
T Consensus 201 krtLeaMa~nKLNVlHW-----HivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD~ 272 (542)
T KOG2499|consen 201 KRTLEAMAANKLNVLHW-----HIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFDT 272 (542)
T ss_pred HHHHHHHHhhhhceeEE-----EeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeecccC
Confidence 55677778888887763 3333211 1 112211 3577889999999999999998753
No 224
>PRK09989 hypothetical protein; Provisional
Probab=36.07 E-value=4.1e+02 Score=25.75 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCC
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEP 344 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP 344 (506)
..+.++++++.|++.|...|. +| +|... .+ .. ....+..++.++.+++..++....+++|.+|..
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v~-v~--~g~~~----~~-------~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~ 148 (258)
T PRK09989 83 ARADIDLALEYALALNCEQVH-VM--AGVVP----AG-------EDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPG 148 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEEE-EC--ccCCC----CC-------CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 467899999999999998664 23 22110 00 01 234566788889999888888888889988853
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCC-CeEEEEe
Q 010600 345 LAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMS 377 (506)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~Viv~ 377 (506)
..... .-.-.+++.+.|+++++ +..+.+.
T Consensus 149 ~~~~~----~~~~~~~~~~ll~~v~~~~v~l~lD 178 (258)
T PRK09989 149 VKPHY----LFSSQYQALAIVEEVARDNVFIQLD 178 (258)
T ss_pred CCCCC----ccCCHHHHHHHHHHcCCCCeEEEee
Confidence 21111 11134566778888875 4445554
No 225
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=35.98 E-value=1.5e+02 Score=26.31 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhc--CCCceeEEEeecCCCCC
Q 010600 270 LDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA--NRPSLAAIELINEPLAP 347 (506)
Q Consensus 270 ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk--~~~~V~g~eL~NEP~~~ 347 (506)
+.+.++........+|+..|..|-..-. .| +.+.++..+..+.|+++.. ..+..++|.-.-=|.
T Consensus 7 I~~~~~~~~~~~~~llfsaHgiP~~~~~-------~g-----d~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~-- 72 (135)
T cd00419 7 IREALAELPREKDRLLFSAHGLPVRDIK-------KG-----DPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPG-- 72 (135)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCHHHHhh-------CC-----CCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCC--
Confidence 3343333323578999999998853210 01 2567888889999999987 555556776322121
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCC
Q 010600 348 GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (506)
Q Consensus 348 ~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 381 (506)
+-+....+++++.+.+.+-+++++++.++-
T Consensus 73 ----~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~ 102 (135)
T cd00419 73 ----EWLEPSTDDALEELAKEGVKNVVVVPIGFV 102 (135)
T ss_pred ----CCCCCCHHHHHHHHHHcCCCeEEEECCccc
Confidence 112334556666666667778888876554
No 226
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=35.63 E-value=62 Score=29.71 Aligned_cols=37 Identities=30% Similarity=0.664 Sum_probs=20.5
Q ss_pred eeEEEEecC---CCceEEecCCCCCCcceEEEEeeC-----CceEEEE
Q 010600 76 QKYIAAESG---GGTIVVANRTSASGWETFRLWRVN-----ETFYNFR 115 (506)
Q Consensus 76 ~~~~~ae~~---g~~~~~anr~~~~~we~f~~~~~~-----~~~~~~~ 115 (506)
=||++.|++ +|..++| +...|+.|.++-++ ...|..|
T Consensus 22 TrYL~v~~~~~~~g~~f~a---s~~~W~~F~I~lvd~~~~~~~~~~~~ 66 (158)
T PF09270_consen 22 TRYLHVENGASGHGPRFVA---SSTQWDPFTIHLVDDPRSNAEPFDVR 66 (158)
T ss_dssp EEEEEEETT------EEEE---ESS----EEEEEE-TT--SSSCEEEE
T ss_pred ceeeecCCCcccceeeeee---ccCcccceEEEEecCCccccCCCCCC
Confidence 489999976 4556666 45689999988883 3445555
No 227
>PLN02849 beta-glucosidase
Probab=35.00 E-value=39 Score=36.99 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=33.6
Q ss_pred hcCCCcEEEEecCCCCCC-------CCCCHHHHHHHHHHHHHHHhc--CCCcEEEEeccc
Q 010600 437 TSNGPLTFVGEWTCEWNV-------KDASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 487 (506)
Q Consensus 437 ~~~gp~v~vGEfg~~~~~-------~~~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 487 (506)
+.+.||++|.|-|..... +....+.++++++.+.++.++ .-.|.++|++-.
T Consensus 382 rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~D 441 (503)
T PLN02849 382 SYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMD 441 (503)
T ss_pred hcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 344668999999976421 111223456677777777654 457999999876
No 228
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=34.84 E-value=2.9e+02 Score=28.29 Aligned_cols=86 Identities=26% Similarity=0.412 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCCC-EEEeCcCcccccCCCCCCCCccchHHHHHH--------HHHHHHHcCC-EEEEecCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGIN-AVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEKYGV-KVIVDLHAAPGSQNGNE 299 (506)
Q Consensus 230 e~d~~~ia~~G~N-~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~--------~v~~a~k~Gi-~VILDlH~~pg~qng~~ 299 (506)
++.|..+|+.|+. .|=|++. +. .|-.++.++.+.+ +++.|.++|| .+++|.-..|-+
T Consensus 136 ~eel~llk~yg~aavIvLa~d------~~--~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs----- 202 (308)
T PRK00979 136 EEEIEALKESDIKAAIVLAFD------PM--DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLP----- 202 (308)
T ss_pred HHHHHHHHHhCCceEEEEEcC------CC--CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCc-----
Confidence 4568999999987 6666553 22 2334678999999 8999999999 455555444321
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 300 HSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 300 ~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
....+++.++.+.++| +.|...| +-|=+.
T Consensus 203 --------------~~~~tl~aI~~iK~~~-G~pt~~G--lSNiS~ 231 (308)
T PRK00979 203 --------------GSGAAIRAIFAVKAKF-GYPVGCA--PHNAPS 231 (308)
T ss_pred --------------cHHHHHHHHHHHHHHc-CCCeEEE--EeCCch
Confidence 1346788889999999 7888877 667665
No 229
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=34.73 E-value=3.2e+02 Score=24.61 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=46.9
Q ss_pred ceEEEEee--CCceEEEEecC--CeEEEeecCCCCceEEEeecCCC--CCceEEEEEcCCCCcceEEeccC--CceeEec
Q 010600 100 ETFRLWRV--NETFYNFRVNN--KQFIGLENQGQGNGLVAVSNTAG--YSETFQIVRKDGDSSRVRLSASN--GMFIQAI 171 (506)
Q Consensus 100 e~f~~~~~--~~~~~~~~~~~--~~~v~~~~~~~~~~~~a~~~~~g--~~EtF~iv~~~~~~~~v~i~a~n--G~~Lqa~ 171 (506)
.+|++..- +.+.+.|.+.| |.|+...|. .-.|.++..+.. .--||..++.-.+++.+.+.+.| |.||.-.
T Consensus 39 a~f~vvpGLa~~~~vSfES~~~PG~yLrh~~~--~v~l~~~d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~ 116 (142)
T PF05270_consen 39 ATFRVVPGLADSSCVSFESVNYPGYYLRHSNF--RVRLEKNDGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY 116 (142)
T ss_dssp G-EEEEE-SS-TTCEEEEESSSTTEEEEEETT--EEEEEE--SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred ceEEEEEccCCCCEEEEEECCCCCcEEEEECC--EEEEeecCCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence 48987764 36779999987 999999752 323333322211 33478777763345667788876 8899987
Q ss_pred cceeeecC
Q 010600 172 SETRLTAD 179 (506)
Q Consensus 172 ~~~~v~ad 179 (506)
+..+..+.
T Consensus 117 ~~~l~l~~ 124 (142)
T PF05270_consen 117 NGELYLAP 124 (142)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEec
Confidence 76654443
No 230
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=34.68 E-value=71 Score=30.37 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=25.8
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhc-CCCceeEEEeec-CCC
Q 010600 283 KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA-NRPSLAAIELIN-EPL 345 (506)
Q Consensus 283 ~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk-~~~~V~g~eL~N-EP~ 345 (506)
-+|||+-.+||+ |.++|..-. .+..|+|+||++ ||-
T Consensus 71 ~~VlD~G~APGs---------------------------WsQVavqr~~p~g~v~gVDllh~~p~ 108 (232)
T KOG4589|consen 71 DTVLDCGAAPGS---------------------------WSQVAVQRVNPNGMVLGVDLLHIEPP 108 (232)
T ss_pred CEEEEccCCCCh---------------------------HHHHHHHhhCCCceEEEEeeeeccCC
Confidence 478899888874 566665433 556899999998 443
No 231
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=34.42 E-value=3.6e+02 Score=26.28 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=40.8
Q ss_pred ccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEee
Q 010600 263 VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELI 341 (506)
Q Consensus 263 ~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~ 341 (506)
.+..++++.++++.|++.|..+|+ +|. |.. .. .. .....+++++.++.|++. .....+++|-+
T Consensus 79 r~~~~~~l~~~i~~A~~lGa~~vv-~h~--g~~-----~~---~~---~e~~~~~~~~~l~~l~~~--~~gv~l~lEn~ 141 (273)
T smart00518 79 VEKSIERLIDEIKRCEELGIKALV-FHP--GSY-----LK---QS---KEEALNRIIESLNEVIDE--TKGVVILLETT 141 (273)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEE-Ecc--ccc-----cC---CC---HHHHHHHHHHHHHHHHhc--cCCcEEEEecc
Confidence 345789999999999999998766 563 210 00 00 024567778888888873 34444667754
No 232
>PLN02429 triosephosphate isomerase
Probab=33.56 E-value=4.5e+02 Score=27.03 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
|=....|++.|++.|=|-=+ +. - .+-.+.-+.+.+=+..|.++||.+||..=
T Consensus 137 EVSa~mLkd~Gv~~ViiGHS-----ER--R-~~f~Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 137 EISVEQLKDLGCKWVILGHS-----ER--R-HVIGEKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred cCCHHHHHHcCCCEEEeCcc-----cc--C-CCCCcCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 33467789999998876321 11 1 11122334455555669999999999874
No 233
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=33.38 E-value=2.4e+02 Score=29.85 Aligned_cols=49 Identities=20% Similarity=0.473 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
++||+..++.|++..=|-++. + +++ ..+.|..+.+.|++.|.+++|.+-
T Consensus 20 ~~di~~A~~~GIDgFaLNig~-----~---d~~---~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIGS-----S---DSW---QPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHcCCCEEEEeccc-----C---Ccc---cHHHHHHHHHHHHhcCCEEEEEec
Confidence 789999999999999987641 1 122 458899999999999999988553
No 234
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=33.20 E-value=1e+02 Score=31.75 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~--~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.++++.++.|++.|++.|.|.+.- .++...+.. ..+.++.+-+.++.++++|+.|.|..-
T Consensus 92 ll~~e~~~~L~~~g~~~v~iSldg---~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~v 153 (358)
T TIGR02109 92 GLTEARLDALADAGLDHVQLSFQG---VDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFV 153 (358)
T ss_pred cCCHHHHHHHHhCCCCEEEEeCcC---CCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEE
Confidence 368899999999999999987731 111100111 124677777888999999998877553
No 235
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=32.99 E-value=97 Score=30.72 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=39.4
Q ss_pred CHHHHHHHHhCC----CCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 010600 229 TDEDFKFLSSNG----INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 229 te~d~~~ia~~G----~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
...+++...+.| ++.||+.++-........-..-.+..++.+.++++.|++.|++|.+..
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 478899998888 999999553211100000001123467888899999999999987543
No 236
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=32.93 E-value=1.3e+02 Score=32.88 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=37.9
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+++.++.+++.|++.|=|.+ ....+.. -..+. ....+...++++.++++||.+.+++-
T Consensus 286 d~ell~~l~~aG~~~v~iGi--ES~~~~~-L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I 344 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGT--EAAAQAT-LDHFRKGTTTSTNKEAIRLLRQHNILSEAQFI 344 (497)
T ss_pred CHHHHHHHHHhCCcEEEEcc--ccCCHHH-HHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEE
Confidence 57788999999998777644 2221110 00011 12566778899999999999877653
No 237
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=32.84 E-value=4.3e+02 Score=25.69 Aligned_cols=147 Identities=19% Similarity=0.257 Sum_probs=79.0
Q ss_pred EEEEecCCeEEEeecCCCCceEEEeecCCCCCceEEEEE----cCCCCcceEEeccCCc--eeEeccceeeecCCCCCCc
Q 010600 112 YNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVR----KDGDSSRVRLSASNGM--FIQAISETRLTADYGSSSW 185 (506)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~a~~~~~g~~EtF~iv~----~~~~~~~v~i~a~nG~--~Lqa~~~~~v~ad~~~~~W 185 (506)
++|.+..|.-|++=+- + -+|..++|-++- .+ ++++.+...+=. .+... | --|.+.
T Consensus 23 Vsl~v~~GEiVGLLGP--N--------GAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~R------A-rlGigY 83 (243)
T COG1137 23 VSLEVNSGEIVGLLGP--N--------GAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKR------A-RLGIGY 83 (243)
T ss_pred eeEEEcCCcEEEEECC--C--------CCCceeEEEEEEEEEecC--CceEEECCcccccCChHHH------h-hcCccc
Confidence 6788888999998521 1 236788997443 22 234444433211 11100 0 112566
Q ss_pred cCCCCCceeecccCCcccchhhhcccCCCchhHHHHhhccc-c--CCHHHH-HHHHhCCCCEEEeCcCcccc--------
Q 010600 186 DDSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDS-Y--ITDEDF-KFLSSNGINAVRIPVGWWIA-------- 253 (506)
Q Consensus 186 ~~~~ps~F~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~-~--ite~d~-~~ia~~G~N~VRIPv~~~~~-------- 253 (506)
+-+|||+|.--.+. ++-..+++-+... . ..+..+ +.+.+..+.++|=.-++..-
T Consensus 84 LpQE~SIFr~LtV~--------------dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 84 LPQEASIFRKLTVE--------------DNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred ccccchHhhcCcHH--------------HHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHH
Confidence 77899999643221 1111222211100 1 011122 34577888888865443211
Q ss_pred ------cCCC---CCCCC---ccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 254 ------NDPT---PPKPF---VGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 254 ------~~~~---~~~~~---~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
.+|. -.+|| ++=....++++|...+++||.|+|.-|+.
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH
Confidence 1110 02344 23478889999999999999999999975
No 238
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=32.78 E-value=1.3e+02 Score=29.28 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=67.0
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHH----HHHcCCEEEEecCCCCCCCCCCCCCCCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDW----AEKYGVKVIVDLHAAPGSQNGNEHSATR 304 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~----a~k~Gi~VILDlH~~pg~qng~~~sg~~ 304 (506)
+.+|++.|+..|+..|=-+ +.+|.+. ...+.+++.+++++.+ |.+.||++-+.+--.|...
T Consensus 13 ~~eDlekMa~sGI~~Vit~-----AhdP~~~-~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~i--------- 77 (254)
T COG1099 13 GFEDLEKMALSGIREVITL-----AHDPYPM-KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAI--------- 77 (254)
T ss_pred cHHHHHHHHHhChhhhhhc-----ccCCCCc-ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCC---------
Confidence 4689999999999887543 2334332 3345578888888754 8889887655443334321
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 010600 305 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 379 (506)
Q Consensus 305 ~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~ 379 (506)
+ . .....+..|-+-++ +..|+++. |-.....+.+.-+ ..++-...-|+. +.+||++.+
T Consensus 78 ---P----~---e~~~~l~~L~~~l~-~e~VvAiG---EiGLe~~t~~E~e-vf~~QL~LA~e~--dvPviVHTP 135 (254)
T COG1099 78 ---P----P---ELEEVLEELEELLS-NEDVVAIG---EIGLEEATDEEKE-VFREQLELAREL--DVPVIVHTP 135 (254)
T ss_pred ---C----c---hHHHHHHHHHhhcc-cCCeeEee---ecccccCCHHHHH-HHHHHHHHHHHc--CCcEEEeCC
Confidence 1 1 24456666666666 55555443 3322222333333 333334444554 467788753
No 239
>PLN02814 beta-glucosidase
Probab=31.72 E-value=46 Score=36.47 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=32.5
Q ss_pred cCCCcEEEEecCCCCCCCC-----CCHHHHHHHHHHHHHHHhc--CCCcEEEEeccc
Q 010600 438 SNGPLTFVGEWTCEWNVKD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 487 (506)
Q Consensus 438 ~~gp~v~vGEfg~~~~~~~-----~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 487 (506)
.+.||++|.|-|.....++ ...+.++++++++.++.+. .-.|.++|++-.
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllD 441 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMID 441 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 4466899999998643211 1123456666666666654 457999999876
No 240
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.42 E-value=1.7e+02 Score=29.04 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
+..+.+++.|++.+|=-. +.+...+..|.+-.++.|+.+.+.|++.||.++-+.|..
T Consensus 33 ~~a~~~~~~g~~~~r~g~----~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGA----YKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred HHHHHHHHcCCCEEEecc----cCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 344558899999999632 223334445555577899999999999999999999964
No 241
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=31.32 E-value=74 Score=34.53 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=33.1
Q ss_pred CcEEEEecCCCCCCC---C------CCHHHHHHHHHHHHHHHhc--CCCcEEEEecccCCCCCC
Q 010600 441 PLTFVGEWTCEWNVK---D------ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKCEANHWS 493 (506)
Q Consensus 441 p~v~vGEfg~~~~~~---~------~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~~~~~Ws 493 (506)
||++|+|-|...... + ...+.++++++...++.++ .-.|.++|++-. +-+|.
T Consensus 369 ~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D-nfEW~ 431 (469)
T PRK13511 369 KKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMD-VFSWS 431 (469)
T ss_pred CCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccc-ccchh
Confidence 579999999753210 1 1123456667777777654 457999999976 33443
No 242
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.97 E-value=1.2e+02 Score=31.39 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=38.8
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
+.+|++...+.|+..|||.++.. ..+.+.+.++++++.|+.|...+-..
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~~s 137 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLMMS 137 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEEcc
Confidence 67899999999999999966321 12457899999999999998877543
No 243
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=30.93 E-value=64 Score=33.04 Aligned_cols=60 Identities=10% Similarity=0.164 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCCEEEeCcCcc---cccCCCCC-----CCCcc------chHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWW---IANDPTPP-----KPFVG------GSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~---~~~~~~~~-----~~~~~------~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.+.++.|+..++|++-+.+.-. .+.-+.-| ..+.. =.-+.++++|+.|+++||.||..+-
T Consensus 21 k~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid 94 (351)
T PF00728_consen 21 KRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEID 94 (351)
T ss_dssp HHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeecc
Confidence 4567788999999999876421 11111110 00111 1468899999999999999999774
No 244
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=30.81 E-value=79 Score=30.49 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=39.1
Q ss_pred CHHHHHH----HHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 229 TDEDFKF----LSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 229 te~d~~~----ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
.+++++. +++.|+..||+.++-........-..-.+..++.+.++++.|+++|+.|-+.+-
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 4556655 456999999997653211000000111235788999999999999999966653
No 245
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=30.73 E-value=65 Score=34.93 Aligned_cols=47 Identities=9% Similarity=0.119 Sum_probs=30.5
Q ss_pred CcEEEEecCCCCCC---CC-----CCHHHHHHHHHHHHHHHhc--CCCcEEEEeccc
Q 010600 441 PLTFVGEWTCEWNV---KD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 487 (506)
Q Consensus 441 p~v~vGEfg~~~~~---~~-----~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 487 (506)
||++|.|-|..... ++ ...+.++++++.+.++.++ .-.|.++|++-.
T Consensus 368 ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D 424 (467)
T TIGR01233 368 KKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMD 424 (467)
T ss_pred CCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 57999999986421 11 1123456667666666654 457999999976
No 246
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=30.55 E-value=1.6e+02 Score=34.45 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 264 GGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 264 ~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
+..++.|..+|+.+++.||+||--+.
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~ 829 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIF 829 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45699999999999999999998765
No 247
>PRK09389 (R)-citramalate synthase; Provisional
Probab=30.50 E-value=56 Score=35.66 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=44.3
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
.++|++.+.+.|.+.|++.++-+.......-..-.+..++.+.++++.|+++|+.|.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 37899999999999999977644221100001122457888899999999999999987753
No 248
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=28.94 E-value=5.4e+02 Score=24.91 Aligned_cols=157 Identities=16% Similarity=0.135 Sum_probs=83.0
Q ss_pred CHHHHH-HHHhCCCCEE--EeCcCcccccC-CCCCC-CCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCC
Q 010600 229 TDEDFK-FLSSNGINAV--RIPVGWWIAND-PTPPK-PFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 303 (506)
Q Consensus 229 te~d~~-~ia~~G~N~V--RIPv~~~~~~~-~~~~~-~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~ 303 (506)
+.+.++ .+++.|+... =+|++.+.... +.... ...+...+.++++++.|++.|..+|.- + +|...
T Consensus 41 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~-~--~g~~~------- 110 (258)
T PRK09997 41 DIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINC-L--VGKTP------- 110 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEE-C--CCCCC-------
Confidence 334444 4567888754 24554332111 00000 111235678999999999999997753 2 22100
Q ss_pred CCCCCCCC-hhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCC-CeEEEEeCCC-
Q 010600 304 RDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMSNRL- 380 (506)
Q Consensus 304 ~~g~~~W~-~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~Viv~~~~- 380 (506)
..+. +...+.+.+.++.+++..++..-.+++|.+|-+..+.. .-.-.+++.+.++++++ +..+.+...+
T Consensus 111 ----~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~----~~~~~~~~~~ll~~v~~~~v~l~~D~~h~ 182 (258)
T PRK09997 111 ----AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGF----HLTGTRQALKLIDDVGCCNLKIQYDIYHM 182 (258)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCC----ccCCHHHHHHHHHHhCCCCEEEEeEHHHh
Confidence 0011 23456677888888888888788889998886421111 11223455567777764 4445554322
Q ss_pred --CCCChhhhhcccCCCCcEEEEEEeec
Q 010600 381 --GPADHKELLSFASGLSRVVIDVHYYN 406 (506)
Q Consensus 381 --~~~~~~~~~~~~~~~~nvv~s~H~Y~ 406 (506)
...++..+... ...-+..+|.-.
T Consensus 183 ~~~g~~~~~~~~~---~~~ri~~vHikD 207 (258)
T PRK09997 183 QRMEGELTNTMTQ---WADKIGHLQIAD 207 (258)
T ss_pred hhcCCcHHHHHHH---hhCcccEEEeCC
Confidence 11233333322 233456677654
No 249
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=28.88 E-value=3.9e+02 Score=23.30 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred ccCceeeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEec--CC-eEEEeecCCCCceEEEeecC
Q 010600 63 LDGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN--NK-QFIGLENQGQGNGLVAVSNT 139 (506)
Q Consensus 63 ~~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~~a~~~~ 139 (506)
+....|.||++..++|||-..-| .|.+... .+.==.|+-.-...+.-.+++. .+ -||.+... |.+--+.++.
T Consensus 41 ~~~g~V~ik~~~s~~YLCmn~~G--~ly~s~~-~~~dC~F~E~~~~n~y~~y~S~~~~~~~ylal~~~--G~~r~~~~t~ 115 (126)
T smart00442 41 VAVGVVAIKGVASCRYLCMNKCG--KLYGSKN-FTEDCVFREEMEENGYNTYASAKYRKRWYVALNKK--GRPRRGQKTK 115 (126)
T ss_pred ccCCEEEEEEcccceEEEECCCC--CEEEccc-CCCCcEEEEEeccCCeEEEEEcccCCceEEEECCC--CCEeEcccCC
Q ss_pred CCCCceEEEEE
Q 010600 140 AGYSETFQIVR 150 (506)
Q Consensus 140 ~g~~EtF~iv~ 150 (506)
++...+--+.+
T Consensus 116 ~~~~~~~Flp~ 126 (126)
T smart00442 116 PLQKASHFLPR 126 (126)
T ss_pred CCCcccEeeeC
No 250
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=28.73 E-value=7.1e+02 Score=26.21 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=71.3
Q ss_pred CCHHHHHHHHhCCCCEEEeCcC-cccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVG-WWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDG 306 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~-~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g 306 (506)
++++.++.+++.|+ .|=|.+. ....-|...+..--.+.++++-+.++.++++++.+.+-.-..
T Consensus 102 L~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv~--------------- 165 (378)
T COG0641 102 LNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVVN--------------- 165 (378)
T ss_pred cCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEEc---------------
Confidence 68889999999999 7777552 111111111111113478899999999999987643322111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCC------CCChHHHHHHHHHHHHHHHhcCCC
Q 010600 307 FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------GVALDTLKSYYKAGYDAVRKYTST 371 (506)
Q Consensus 307 ~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p~ 371 (506)
+.+.++..++.+.+++.. ...+-.+.++-..... ..+.+.+.+++.+..+..++.+-.
T Consensus 166 -----~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~ 229 (378)
T COG0641 166 -----RQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHDVG 229 (378)
T ss_pred -----hhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 133344555666666533 2222223444433321 245678999999999999998733
No 251
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=28.47 E-value=58 Score=31.73 Aligned_cols=51 Identities=29% Similarity=0.582 Sum_probs=34.4
Q ss_pred ccccCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEe
Q 010600 224 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (506)
Q Consensus 224 w~~~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILD 287 (506)
|+.-+-|.||..-++-|+.+|-| .|-.-+++++..+.|+.|+..||..+|.
T Consensus 213 WDEs~readF~~e~e~gv~avVI-------------KPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 213 WDESLREADFAFEAEPGVRAVVI-------------KPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred ecchhcccccccccCCCceEEEe-------------cccchhhHHHHHHHHHHHHhcCceeEee
Confidence 44444455555555555554443 1234578999999999999999999885
No 252
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=28.19 E-value=70 Score=21.79 Aligned_cols=15 Identities=27% Similarity=0.487 Sum_probs=10.0
Q ss_pred cchhhHHHHHHHHHH
Q 010600 2 AYDSYANVVSSLFLF 16 (506)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (506)
.+|||..+.++++++
T Consensus 6 l~dfylc~l~~llfl 20 (43)
T PF11395_consen 6 LFDFYLCFLSFLLFL 20 (43)
T ss_pred hhHHHHHHHHHHHHH
Confidence 369999988444333
No 253
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=27.94 E-value=2.5e+02 Score=28.92 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=54.5
Q ss_pred CHHHHHH----HHhCC--CCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCC
Q 010600 229 TDEDFKF----LSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 302 (506)
Q Consensus 229 te~d~~~----ia~~G--~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg 302 (506)
+++++.. +++.+ ++++=|-+.|+.. ...-.+++..+...+++++.+++.|+++++.+|..-. .|....+
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~---~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~--~g~~~~~ 96 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQDN---YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS--YGGGLGS 96 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchhcC---CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee--cCccCCC
Confidence 4444444 44455 3455555544321 1111233444555678899999999999998874322 1111111
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCC
Q 010600 303 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 345 (506)
Q Consensus 303 ~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~ 345 (506)
...|.+-......+.|..+.+.+-+...-.-|-=+|||.
T Consensus 97 ----~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~ 135 (332)
T cd06601 97 ----PGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPA 135 (332)
T ss_pred ----CceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcc
Confidence 111222233345556766655554332112245589985
No 254
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=27.80 E-value=4.3e+02 Score=27.86 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCC--CceeEEEee-
Q 010600 265 GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANR--PSLAAIELI- 341 (506)
Q Consensus 265 ~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~--~~V~g~eL~- 341 (506)
..++.+.++|+.|++.|-.+|+ +| +|. .+.+.... ... ....+.+++.++.+++.-++. ...+++|.+
T Consensus 112 ~ai~~~kraId~A~eLGa~~v~-v~--~G~-~g~~~~~~----~d~-~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p 182 (382)
T TIGR02631 112 YALRKVLRNMDLGAELGAETYV-VW--GGR-EGAEYDGA----KDV-RAALDRMREALNLLAAYAEDQGYGLRFALEPKP 182 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-Ec--cCC-CCCcCccc----cCH-HHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4688899999999999998653 33 221 11111100 000 245567788888888766654 345779887
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhcC-CCe-EEEEe
Q 010600 342 NEPLAPGVALDTLKSYYKAGYDAVRKYT-STA-YVIMS 377 (506)
Q Consensus 342 NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~-~Viv~ 377 (506)
|||.. ..+-.-..++...|++++ |+. -|.+.
T Consensus 183 ~~~~~-----~~ll~T~~~al~li~~v~~pn~vgl~lD 215 (382)
T TIGR02631 183 NEPRG-----DILLPTVGHALAFIETLERPELFGLNPE 215 (382)
T ss_pred CCCCc-----ceecCCHHHHHHHHHHcCCccceeEEEe
Confidence 67753 122333456667777776 442 34444
No 255
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.56 E-value=46 Score=28.54 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=24.5
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV 284 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~V 284 (506)
++++||+.|++.||.+|== . .-+.+.+ .....+..-+.|++.||.-
T Consensus 15 ~~~~d~~~la~~GfktVIn-l----Rpd~E~~------~qp~~~~~~~~a~~~Gl~y 60 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFKTVIN-L----RPDGEEP------GQPSSAEEAAAAEALGLQY 60 (110)
T ss_dssp --HHHHHHHHHCT--EEEE------S-TTSTT------T-T-HHCHHHHHHHCT-EE
T ss_pred CCHHHHHHHHHCCCcEEEE-C----CCCCCCC------CCCCHHHHHHHHHHcCCeE
Confidence 7899999999999998831 1 1111111 1122445567899999875
No 256
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=27.55 E-value=3.3e+02 Score=22.00 Aligned_cols=73 Identities=7% Similarity=0.127 Sum_probs=35.6
Q ss_pred ceeEEEEecC-CCceE-EecCCCCCCcceEEEEeeCCceEEEEecCCeEEEeecCCCCceEEEeecCC-CCCceEEEEE
Q 010600 75 FQKYIAAESG-GGTIV-VANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTA-GYSETFQIVR 150 (506)
Q Consensus 75 ~~~~~~ae~~-g~~~~-~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~-g~~EtF~iv~ 150 (506)
.|+.|.+..+ .+..| +..-...+.-..|.+.. .+.+.++. .+.-+.+.+...+..++...-.. .....|++..
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~--~g~~~~~~-~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~ 84 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTS--DGTIRIKS-SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNK 84 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeC--CCeEEEcC-CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECC
Confidence 6677766654 12333 33332222334444443 56676665 55555554311123455544444 5566776654
No 257
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=27.34 E-value=1.9e+02 Score=29.57 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCc--cchHHHHHHHHHHHHHcCCE-EEEecCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVK-VIVDLHAAP 292 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~--~~~l~~ld~~v~~a~k~Gi~-VILDlH~~p 292 (506)
++.++.+++.|++.|.|.+.- .++.....+. .+.++.+-+.++.+.+.|+. |-+.....+
T Consensus 102 ~~~~~~L~~~gl~~v~ISld~---~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~ 164 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLDS---LDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMR 164 (334)
T ss_pred HHHHHHHHHcCCCeEEEeccc---CCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 457889999999999886632 1221111222 23688888899999999997 877765444
No 258
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=27.13 E-value=3.3e+02 Score=29.25 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=59.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCC--CccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKP--FVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGF 307 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~--~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~ 307 (506)
.+..+.+++.|+|.+-|.- .+-...+. ...-.+..+.++.+..+.|||+|-|...-+..-+-|.-.++
T Consensus 186 kDYAR~laSiGINg~v~NN-----VNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsinfaSP~~lGgL~TA----- 255 (684)
T COG3661 186 KDYARALASIGINGTVLNN-----VNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSINFASPMELGGLKTA----- 255 (684)
T ss_pred HHHHHHHhhcCcceEEecc-----cccchhhhheechHhHHHHHHHHHHhhhccceEEEEeccCCccccCCcCcC-----
Confidence 4556678999999988731 01111112 22347888999999999999999998874422211111111
Q ss_pred CCCChhhHHHHHHHHHHHHH-HhcCCCceeEEEee
Q 010600 308 QEWGDSNVADTVAVIDFLAA-RYANRPSLAAIELI 341 (506)
Q Consensus 308 ~~W~~~~~~~~~~~w~~lA~-ryk~~~~V~g~eL~ 341 (506)
+..-++..++|+.-|. -|+--|..-||=+.
T Consensus 256 ----DPLDe~VrawWkeka~~IY~yIPDFGGFLVK 286 (684)
T COG3661 256 ----DPLDEAVRAWWKEKADEIYKYIPDFGGFLVK 286 (684)
T ss_pred ----CcccHHHHHHHHHHHHHHHHhcccccceEEe
Confidence 1334566788886554 57777776666443
No 259
>PLN02389 biotin synthase
Probab=26.99 E-value=4.8e+02 Score=27.46 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 305 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~ 305 (506)
..+++.++.|+++|++.+-+ .... . +.-.... ....++..-+.++.|++.||.|-. |...|. |
T Consensus 175 ~l~~E~l~~LkeAGld~~~~--~LeT-s-~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~s--g~IiGl-------g--- 238 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNH--NLDT-S-REYYPNVITTRSYDDRLETLEAVREAGISVCS--GGIIGL-------G--- 238 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEe--eecC-C-hHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeE--EEEECC-------C---
Confidence 47899999999999997654 3221 0 1000111 123567777789999999998733 333221 0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCC--CChHHHH-HHHHHHHHHHHhcCCCeEEEEeCCC
Q 010600 306 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG--VALDTLK-SYYKAGYDAVRKYTSTAYVIMSNRL 380 (506)
Q Consensus 306 g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~--~~~~~~~-~~~~~~~~aIR~~~p~~~Viv~~~~ 380 (506)
+..++.++.+..|.+ ++.++.-+.+..++ |.... ....... .-+-+.+...|-.-|+..+-+.++|
T Consensus 239 -------Et~edrv~~l~~Lr~-L~~~~~~v~l~~l~-P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr 307 (379)
T PLN02389 239 -------EAEEDRVGLLHTLAT-LPEHPESVPINALV-AVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR 307 (379)
T ss_pred -------CCHHHHHHHHHHHHh-cccCCcEEecccce-ecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc
Confidence 233455555554443 33334333333332 22110 0000011 1234567778888999988887666
No 260
>PLN02998 beta-glucosidase
Probab=26.88 E-value=65 Score=35.27 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=32.9
Q ss_pred hcCCCcEEEEecCCCCCCC-----CCCHHHHHHHHHHHHHHHhc--CCCcEEEEeccc
Q 010600 437 TSNGPLTFVGEWTCEWNVK-----DASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 487 (506)
Q Consensus 437 ~~~gp~v~vGEfg~~~~~~-----~~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 487 (506)
+.+.||++|.|-|.....+ ....+.++++++.+..+.++ .-.|.++|++-.
T Consensus 389 rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~D 446 (497)
T PLN02998 389 TYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMD 446 (497)
T ss_pred HcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 3445689999999754211 11223456667777666654 457999999876
No 261
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=26.68 E-value=2e+02 Score=27.41 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHc-CCEEEEecCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY-GVKVIVDLHAA 291 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~-Gi~VILDlH~~ 291 (506)
+.--+.|.+.|++++.--- ..+ +..|...+-.-.+.+-+..+++ +|.++||+|..
T Consensus 37 ~~L~~~Le~~Gi~vihd~t----~~~---~~~y~~sY~~Sr~tv~~~l~~~p~i~~viDiHRD 92 (196)
T TIGR02867 37 DRLAKELEEKGIGVIHDKT----VHD---GLNYEQSYDRSRETVKKALKENKDLKYIIDLHRD 92 (196)
T ss_pred HHHHHHHHHCCCeEEEeCC----ccC---CccHHHHHHHHHHHHHHHHHHCCCceEEEEeecC
Confidence 3445667788999887632 111 1133333444444444555556 78999999975
No 262
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=87 Score=31.82 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCCEEEeCcCccccc--CCCCCCCC---cc--chHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIAN--DPTPPKPF---VG--GSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~--~~~~~~~~---~~--~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
++.|+.||+.|+|++=|-+--...+ -+. ..++ .. .-+.-+..+|..|++.|||+|--.-
T Consensus 80 de~fk~ikdn~~Na~ViD~Kdd~G~lty~s-~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiV 145 (400)
T COG1306 80 DELFKLIKDNNINAFVIDVKDDYGELTYPS-SDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARIV 145 (400)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccEeccc-cchhhhhhhccccccccHHHHHHHHhcCeEEEEEEE
Confidence 5789999999999999866421110 010 0111 11 2355577899999999999987543
No 263
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=25.52 E-value=1.8e+02 Score=28.63 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=37.5
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
..++++..++.|++.|||.++-. ....+.++++.|++.|+.|.+.+-
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46889999999999999955321 124578899999999999988874
No 264
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=25.46 E-value=2e+02 Score=28.42 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=36.0
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
.+-.++...+.|.+.|=|-... . ..+.+.++++.|+++|+.+++|+|..
T Consensus 122 ~~~qi~~a~~~GAD~VlLi~~~---l-----------~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 122 DPYQIYEARAAGADAILLIVAA---L-----------DDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred CHHHHHHHHHcCCCEEEEEecc---C-----------CHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3445666778888888773321 0 12579999999999999999999953
No 265
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=25.40 E-value=1.9e+02 Score=29.26 Aligned_cols=25 Identities=16% Similarity=-0.049 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
..+.+++++++|+++|+.||+|-.-
T Consensus 142 s~~~l~~l~~~~~~~~~~iI~DE~y 166 (330)
T PRK05664 142 DPARLLAWHARLAARGGWLVVDEAF 166 (330)
T ss_pred CHHHHHHHHHHHHhcCCEEEEECCc
Confidence 5778999999999999999999653
No 266
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=25.39 E-value=83 Score=32.80 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEec
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~--~~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
.++++.++.|++.|++.|+|.+.- .+++..+.. ..+.++.+-+.++.++++|+.|.|..
T Consensus 101 ll~~~~~~~L~~~g~~~v~iSldg---~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 101 GLTEARLAALKDAGLDHIQLSFQD---SDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred cCCHHHHHHHHHcCCCEEEEEecC---CCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 368899999999999999997742 111100011 12367777788899999999987765
No 267
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=25.37 E-value=6.5e+02 Score=25.57 Aligned_cols=29 Identities=0% Similarity=-0.071 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 263 VGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 263 ~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
+...+.-.+++|+.++++|++|++.+|..
T Consensus 61 d~~~FPdp~~mi~~L~~~G~kv~~~i~P~ 89 (319)
T cd06591 61 DPERFPDPKAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred ChhhCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 44455667899999999999999987743
No 268
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=25.31 E-value=1.2e+02 Score=30.00 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=38.7
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
|++-.+...+.+|.++|=|.+.. .+ -+.+.++++.|++.||-|++..|.
T Consensus 117 iD~yQI~~Ar~~GADavLLI~~~---L~-----------~~~l~el~~~A~~LGm~~LVEVh~ 165 (254)
T COG0134 117 IDPYQIYEARAAGADAVLLIVAA---LD-----------DEQLEELVDRAHELGMEVLVEVHN 165 (254)
T ss_pred CCHHHHHHHHHcCcccHHHHHHh---cC-----------HHHHHHHHHHHHHcCCeeEEEECC
Confidence 56677777888899988886631 21 146899999999999999999994
No 269
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.07 E-value=4.6e+02 Score=25.67 Aligned_cols=94 Identities=15% Similarity=0.258 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecC
Q 010600 264 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 343 (506)
Q Consensus 264 ~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NE 343 (506)
...++.+.++++.|++.|...|+ +|. |.... ... +...+.+++.++.|++.-+...-.+++|..
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~-~~~--g~~~~--------~~~---~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~-- 144 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLV-FHP--GSYLG--------QSK---EEGLKRVIEALNELIDKAETKGVVIALETM-- 144 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-ECC--CCCCC--------CCH---HHHHHHHHHHHHHHHHhccCCCCEEEEeCC--
Confidence 45788999999999999999765 453 21100 000 355677888999999877777766777743
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcC--CCeEEEEe
Q 010600 344 PLAPGVALDTLKSYYKAGYDAVRKYT--STAYVIMS 377 (506)
Q Consensus 344 P~~~~~~~~~~~~~~~~~~~aIR~~~--p~~~Viv~ 377 (506)
|.... .+-.-..++.+.|++++ |+.-+++.
T Consensus 145 ~~~~~----~~~~t~~~~~~li~~v~~~~~~g~~lD 176 (279)
T cd00019 145 AGQGN----EIGSSFEELKEIIDLIKEKPRVGVCID 176 (279)
T ss_pred CCCCC----CCCCCHHHHHHHHHhcCCCCCeEEEEE
Confidence 33210 01112234455566665 55556665
No 270
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.69 E-value=2.3e+02 Score=28.26 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCC-CCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDP-TPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~-~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
.+..+.+|++|+..+|.-. ++| ..+..|.+-..+.+..+.+.|++.||.++-+.|..
T Consensus 44 ~~~A~~lk~~g~~~~r~~~-----~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 44 VKVAEKLKELGVHMLRGGA-----FKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHHHHHHcCCCEEEEee-----ecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 4567888999999999832 223 22233433346667777778999999999999964
No 271
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=24.64 E-value=2e+02 Score=23.92 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=35.1
Q ss_pred ccCCHHHHHHHHhCC-CCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEE
Q 010600 226 SYITDEDFKFLSSNG-INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 286 (506)
Q Consensus 226 ~~ite~d~~~ia~~G-~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VIL 286 (506)
+..+..||+.+-+.| ++.|++-+.. -+.+....++.+.|+++||.+++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~-------------~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTR-------------CGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHH-------------HTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchh-------------cCCHHHHHHHHHHHHHhCCCEEe
Confidence 345678888876655 7888874432 24678899999999999999876
No 272
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=24.59 E-value=7.6e+02 Score=25.14 Aligned_cols=136 Identities=11% Similarity=0.184 Sum_probs=61.1
Q ss_pred eecCceeeecCC---CC---cCCccCCCCccccCceeeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCce
Q 010600 38 NLGNWLVTEGWM---KP---SRFDDIPNKDLLDGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETF 111 (506)
Q Consensus 38 ~~~~~~~~~~~~---~~---~~~~~~~~~~~~~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~ 111 (506)
+-.+|+|-|+-+ |. .=+++++-+--+.|+-..+.+...+.-+.+-..| .|.--.+.-..|+... -...+..
T Consensus 71 ~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G--~iy~T~DgG~tW~~~~-~~~~gs~ 147 (302)
T PF14870_consen 71 GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG--AIYRTTDGGKTWQAVV-SETSGSI 147 (302)
T ss_dssp TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE--S----E
T ss_pred CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC--cEEEeCCCCCCeeEcc-cCCccee
Confidence 344677777633 11 1122344333356777777776666544443333 4455555666887654 2333444
Q ss_pred EEE-EecCCeEEEeecCCCCceEEEeecCCCCCceEEEEEcCCCCcceEEeccCCceeEeccceeeecC
Q 010600 112 YNF-RVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSASNGMFIQAISETRLTAD 179 (506)
Q Consensus 112 ~~~-~~~~~~~v~~~~~~~~~~~~a~~~~~g~~EtF~iv~~~~~~~~v~i~a~nG~~Lqa~~~~~v~ad 179 (506)
..+ |..+|+||.+... |+.+.....--..|+.++...... -..|.+...++-|+-++++.+...+
T Consensus 148 ~~~~r~~dG~~vavs~~--G~~~~s~~~G~~~w~~~~r~~~~r-iq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSR--GNFYSSWDPGQTTWQPHNRNSSRR-IQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp EEEEE-TTS-EEEEETT--SSEEEEE-TT-SS-EEEE--SSS--EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred EeEEECCCCcEEEEECc--ccEEEEecCCCccceEEccCccce-ehhceecCCCCEEEEeCCcEEEEcc
Confidence 443 5559999999864 443333222222477666321110 0123334344558888888776666
No 273
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=24.51 E-value=75 Score=23.22 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCCeEEEEeC
Q 010600 358 YKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 358 ~~~~~~aIR~~~p~~~Viv~~ 378 (506)
+.++.+.|++.||++.|.+.+
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE--
T ss_pred HHHHHHHHHHhCCCEEEEEEc
Confidence 567889999999999998864
No 274
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=24.00 E-value=2.1e+02 Score=29.50 Aligned_cols=56 Identities=32% Similarity=0.490 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg 293 (506)
..+++-++.|.++|++-||+... .+ .+...+..-+.+..|+++||-|=+.+-+.||
T Consensus 121 ~~~~e~l~~L~eAGLDEIRfHp~-------~~----~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg 176 (353)
T COG2108 121 LATEEALKALAEAGLDEIRFHPP-------RP----GSKSSEKYIENLKIAKKYGMDVGVEIPAIPG 176 (353)
T ss_pred cCCHHHHHHHHhCCCCeEEecCC-------Cc----cccccHHHHHHHHHHHHhCccceeecCCCcc
Confidence 46899999999999999998432 11 1224455666778888999999777776664
No 275
>PRK14566 triosephosphate isomerase; Provisional
Probab=23.88 E-value=7.3e+02 Score=24.72 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
|=....|++.|++.|=|--+ +.. .+-.+.-+.+.+-+..|.++||.+||..=
T Consensus 85 evS~~mL~d~G~~~viiGHS-----ERR---~~f~Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 85 EVSGQMLKDAGCRYVIIGHS-----ERR---RMYGETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred ccCHHHHHHcCCCEEEECcc-----ccc---CCCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 33467789999999877321 111 12223445566788899999999999874
No 276
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=23.85 E-value=7.6e+02 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.002 Sum_probs=31.3
Q ss_pred ceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Q 010600 334 SLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 379 (506)
Q Consensus 334 ~V~g~eL~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~ 379 (506)
++-+|+..+|+... ....+.+.++..++.+.+|+..|+.+||..++
T Consensus 168 ~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG 214 (315)
T TIGR01370 168 LIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNG 214 (315)
T ss_pred cchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCc
Confidence 45556666554321 12346778889999999999999987776644
No 277
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=23.71 E-value=1.2e+02 Score=32.95 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=33.1
Q ss_pred HHHhcCCCcEEEEecCCCCCC----CC-----CCHHHHHHHHHHHHHHHhc--CCCcEEEEeccc
Q 010600 434 AVTTSNGPLTFVGEWTCEWNV----KD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 487 (506)
Q Consensus 434 ~~~~~~gp~v~vGEfg~~~~~----~~-----~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 487 (506)
.+.++.+.|++|.|-|..... ++ ...+.++++++++.++.++ .-.|.++|++-.
T Consensus 359 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~D 423 (474)
T PRK09852 359 MMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCID 423 (474)
T ss_pred HHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccc
Confidence 343444556999999976321 11 1123445666666666654 457999999976
No 278
>PRK00865 glutamate racemase; Provisional
Probab=23.64 E-value=3.2e+02 Score=26.99 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 319 VAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 319 ~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
+.+++.|.+++.+..-|..-|..|=|.. .-+.+.+.++..++++.+.+.+.+.+|+-++
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG-~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYG-EKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 4688999999999999998999999996 4577899999999999999988888777664
No 279
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=23.56 E-value=2.8e+02 Score=23.71 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=33.4
Q ss_pred CCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCChhh
Q 010600 331 NRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKE 387 (506)
Q Consensus 331 ~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~~ 387 (506)
..|.++++..+..- .. .+.++.+.||+..|+.+|++++...+..+..
T Consensus 38 ~~pdiv~~S~~~~~---------~~-~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~ 84 (127)
T cd02068 38 LKPDVVGISLMTSA---------IY-EALELAKIAKEVLPNVIVVVGGPHATFFPEE 84 (127)
T ss_pred cCCCEEEEeecccc---------HH-HHHHHHHHHHHHCCCCEEEECCcchhhCHHH
Confidence 67899999875432 11 5678889999999999999986554334443
No 280
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=23.56 E-value=6.4e+02 Score=28.15 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=68.3
Q ss_pred HHHHhhccccCCHHHHHHHHhCCC---------CEEEeCcC------cccccCCCCCCCCccchHHHHHHHHHHHHHcCC
Q 010600 218 QVLQDHWDSYITDEDFKFLSSNGI---------NAVRIPVG------WWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGV 282 (506)
Q Consensus 218 ~~~~~hw~~~ite~d~~~ia~~G~---------N~VRIPv~------~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi 282 (506)
..+.+.|++|+..+..+.+..-|+ ..|=|-.. +|....... | .+.|+.|...++.|++.|.
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~td--p--~~~lqWf~~~L~~ae~~Ge 359 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTD--P--IDQLQWFVDQLQEAESAGE 359 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCC--c--hHHhhHHHHHHHHHHhcCC
Confidence 557788999999988888776654 33333322 333332222 2 2359999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCce
Q 010600 283 KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSL 335 (506)
Q Consensus 283 ~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V 335 (506)
+|-|=.|-.||... -...|......-..++=+.|+.+|-+++.+
T Consensus 360 kVhil~HIPpG~~~---------c~~~ws~~f~~iv~r~~~tI~gqf~GH~h~ 403 (577)
T KOG3770|consen 360 KVHILGHIPPGDGV---------CLEGWSINFYRIVNRFRSTIAGQFYGHTHI 403 (577)
T ss_pred EEEEEEeeCCCCcc---------hhhhhhHHHHHHHHHHHHhhhhhccccCcc
Confidence 99999999887411 112343233333445667788888787755
No 281
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.54 E-value=1.2e+02 Score=27.71 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC-ccchHHHHHHHHHHHHHcC-CEEEEec
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYG-VKVIVDL 288 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~k~G-i~VILDl 288 (506)
.++++.++.|++.|+..|.|.+.-. ++...... ....++.+.+.++.++++| +.|-+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSG---SDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccC---CHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 4678999999999999888866421 11000000 1235688888999999999 5554433
No 282
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=23.43 E-value=1.4e+02 Score=30.75 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCC
Q 010600 267 SKVLDNAFDWAEKYGVKVIVDLHAAPGS 294 (506)
Q Consensus 267 l~~ld~~v~~a~k~Gi~VILDlH~~pg~ 294 (506)
...++++.+.|+++||.||-|--++.|+
T Consensus 126 ~~d~~~i~~~~~~~~i~lIeD~a~a~g~ 153 (363)
T PF01041_consen 126 PADMDAIRAIARKHGIPLIEDAAQAFGA 153 (363)
T ss_dssp ---HHHHHHHHHHTT-EEEEE-TTTTT-
T ss_pred cccHHHHHHHHHHcCCcEEEccccccCc
Confidence 3459999999999999999999877765
No 283
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=23.38 E-value=1.4e+02 Score=32.57 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=34.5
Q ss_pred HHHhcCCCcEEEEecCCCCCC----C-----CCCHHHHHHHHHHHHHHHh-c--CCCcEEEEeccc
Q 010600 434 AVTTSNGPLTFVGEWTCEWNV----K-----DASKQDYQRFANAQLDVYG-R--ATFGWAYWAHKC 487 (506)
Q Consensus 434 ~~~~~~gp~v~vGEfg~~~~~----~-----~~~~~~~~~~~~~q~~~~~-~--~~~Gw~~W~~k~ 487 (506)
.+.++.+.|++|.|-|..... + ....+.++++++.+.++.+ + .-.|.++|++-.
T Consensus 362 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~D 427 (477)
T PRK15014 362 ELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCID 427 (477)
T ss_pred HHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 344444556999999976421 1 1122345677777777774 3 457999999865
No 284
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.33 E-value=7.9e+02 Score=26.24 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHhC--CCCEEEeCcCcccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEE
Q 010600 227 YITDEDFKFLSSN--GINAVRIPVGWWIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKV 284 (506)
Q Consensus 227 ~ite~d~~~ia~~--G~N~VRIPv~~~~~~~~~---~~~~~~~~~l~~ld~~v~~a~k~Gi~V 284 (506)
.++++.++.|++. |++.+-||+- ...+.. -...+ ..+.+.++++.++++|..+
T Consensus 231 ~i~~ell~~l~~~~~g~~~l~igvQ--Sgs~~vLk~m~R~~---~~~~~~~~v~~lr~~~~~i 288 (440)
T PRK14334 231 NFTDDVIAAMAETPAVCEYIHLPVQ--SGSDRVLRRMAREY---RREKYLERIAEIREALPDV 288 (440)
T ss_pred cCCHHHHHHHHhcCcCCCeEEeccc--cCCHHHHHHhCCCC---CHHHHHHHHHHHHHhCCCc
Confidence 4789999999985 5999998873 111100 01112 3466778888899987554
No 285
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=23.15 E-value=1.2e+02 Score=33.00 Aligned_cols=58 Identities=19% Similarity=0.492 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC--hhhHHHHHHHHHHHHHHhcCCCc
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG--DSNVADTVAVIDFLAARYANRPS 334 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~--~~~~~~~~~~w~~lA~ryk~~~~ 334 (506)
..+.+|.+++.|++.||+=||-|...|-- +...|. ...-+..+++++.|-+.|.|+-.
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALRGDpP~-----------g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~ 149 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALRGDPPI-----------GQDKWVEEEGGFRYAVDLVRYIRSKYGDYFC 149 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhcCCCCC-----------CccccccccCCchhHHHHHHHHHHHhCCeEE
Confidence 46889999999999999999999987632 111122 11234678999999999998753
No 286
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=23.14 E-value=96 Score=30.87 Aligned_cols=57 Identities=9% Similarity=0.012 Sum_probs=45.9
Q ss_pred HHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 010600 232 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 293 (506)
Q Consensus 232 d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg 293 (506)
+.++||+.|-+.|.|-+-|. .+.+ ..++.-+.+++++.+.|...+|-.+|.+-.++.
T Consensus 116 sa~riK~~G~~avK~Lvy~~----~D~~-e~neqk~a~ierigsec~aedi~f~lE~ltyd~ 172 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYR----SDED-EINEQKLAYIERIGSECHAEDLPFFLEPLTYDP 172 (306)
T ss_pred CHHHHHHhcccceEEEEEEc----CCch-HHhHHHHHHHHHHHHHhhhcCCceeEeeeecCC
Confidence 57889999999999966442 2222 445678999999999999999999999987753
No 287
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=23.09 E-value=3.1e+02 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=19.5
Q ss_pred HHHHHHHHHHH-HHcCCEEEEecCCCCC
Q 010600 267 SKVLDNAFDWA-EKYGVKVIVDLHAAPG 293 (506)
Q Consensus 267 l~~ld~~v~~a-~k~Gi~VILDlH~~pg 293 (506)
-+.|.+.++.. +++|..++||+|..|.
T Consensus 124 H~al~~~L~~~~~~~g~~~liD~HSm~s 151 (263)
T TIGR02017 124 HAALQAEIERLRAQHGYAVLYDAHSIRS 151 (263)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccCCc
Confidence 44555556544 5779999999998764
No 288
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=23.04 E-value=2.7e+02 Score=28.98 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEe
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 287 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILD 287 (506)
-.|.+-.+.|.++|.+.||+-++-=..-....---.--..+..+-++-+.|+++|..||-|
T Consensus 159 V~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIAD 219 (346)
T PRK05096 159 VVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSD 219 (346)
T ss_pred ccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEec
Confidence 3588899999999999999987642211110000000127889999999999999999876
No 289
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=23.02 E-value=2.2e+02 Score=26.58 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=34.6
Q ss_pred HHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 232 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 232 d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
+++.++++|.+.|=++... + -..+.++++.|+++|+.++++++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~-----~----------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA-----D----------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccC-----C----------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 5888899999988875421 1 134788999999999999999875
No 290
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.95 E-value=4.8e+02 Score=27.25 Aligned_cols=134 Identities=13% Similarity=0.202 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCc----cchHHHHHHHHHHHHHcCCE-EEEecCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVK-VIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~----~~~l~~ld~~v~~a~k~Gi~-VILDlH~~pg~qng~~~s 301 (506)
.++++.++.++++|++.+-+-+ ... ++.-..... ...++..-+.++.|++.||. |=.++-- |
T Consensus 160 ~lt~e~l~~Lk~aGv~r~~i~l--ET~-~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~--G-------- 226 (371)
T PRK09240 160 PLSEEEYAELVELGLDGVTVYQ--ETY-NPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALL--G-------- 226 (371)
T ss_pred CCCHHHHHHHHHcCCCEEEEEE--ecC-CHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEe--c--------
Confidence 4689999999999999555433 211 110000010 12455566678899999995 5333221 1
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCC-ChHHH-HHHHHHHHHHHHhcCCCeEEEEeCC
Q 010600 302 ATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-ALDTL-KSYYKAGYDAVRKYTSTAYVIMSNR 379 (506)
Q Consensus 302 g~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~-~~~~~-~~~~~~~~~aIR~~~p~~~Viv~~~ 379 (506)
-..| ....-.++...+.|-.+|...+.-+-+..++ |..... +...+ ..-+.+.+.+.|-..|+.-|.++++
T Consensus 227 -----lge~-~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~-P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g 299 (371)
T PRK09240 227 -----LSDW-RTDALMTALHLRYLQRKYWQAEYSISFPRLR-PCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTR 299 (371)
T ss_pred -----CCcc-HHHHHHHHHHHHHHHHhCCCCceeeecCccc-cCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecC
Confidence 1111 1233344556677777787765433222122 221110 00001 1234567888899999999988864
Q ss_pred C
Q 010600 380 L 380 (506)
Q Consensus 380 ~ 380 (506)
-
T Consensus 300 ~ 300 (371)
T PRK09240 300 E 300 (371)
T ss_pred C
Confidence 3
No 291
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=22.93 E-value=5.8e+02 Score=23.24 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=64.4
Q ss_pred HHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEW 310 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W 310 (506)
-|+..+++.|+..|=|-.+. . ..+.. ..++.-++.|++.||.|=+ .|-.... + .
T Consensus 10 ~dw~~~k~~gi~fviikate-----G---~~~~D---~~~~~n~~~a~~aGl~~G~-Yhf~~~~-~-----------~-- 63 (181)
T PF01183_consen 10 IDWQKVKAAGIDFVIIKATE-----G---TSYVD---PYFESNIKNAKAAGLPVGA-YHFARAT-N-----------S-- 63 (181)
T ss_dssp -SHHHHHHTTEEEEEEEEEE-----T---TTEE----TTHHHHHHHHHHTTSEEEE-EEE--TT-T-----------H--
T ss_pred cCHHHHHHCCCCEEEEEeee-----C---CCeec---chHHHHHHHHHHcCCeEEE-EEEeccC-C-----------c--
Confidence 34899999997755443221 0 01111 2266778889999999732 2322110 0 0
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 311 GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 311 ~~~~~~~~~~~w~~lA~ryk~~~~V~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
....++...+++.+. ........+.+|+=.. .....+.....++.++..+.|++.....++|..
T Consensus 64 -~~a~~qA~~f~~~~~-~~~~~~~~~~lD~E~~-~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~iY~ 127 (181)
T PF01183_consen 64 -SDAEAQADYFLNQVK-GGDPGDLPPALDVEDD-KSNNPSKSDNTAWVKAFLDEVEKAAGYKPGIYT 127 (181)
T ss_dssp -CHHHHHHHHHHHCTH-TSSTSCS-EEEEE-S--GGCCSSHHHHHHHHHHHHHHHHHHCTSEEEEEE
T ss_pred -ccHHHHHHHHHHHhc-ccCCCcceEEEecccc-ccCCCCHHHHHHHHHHHHHHHHHHhCCceeEee
Confidence 134455555666654 2222233345666532 222346789999999999999775555666554
No 292
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=22.59 E-value=1.6e+02 Score=28.58 Aligned_cols=51 Identities=29% Similarity=0.478 Sum_probs=38.1
Q ss_pred ccccCceeeEeeeeceeEEEEecCCCceEEecCCCCCCcceEEEEeeCCceEEEEecCCeEEEee
Q 010600 61 DLLDGTQVQFMSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLE 125 (506)
Q Consensus 61 ~~~~g~~~~~~s~~~~~~~~ae~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~ 125 (506)
-+|||+.|.+|+. |-.|| +.+.+ ..||+=+|. +..+.+.|.+.+|+||+.+
T Consensus 106 ~lL~~~~v~v~hp-------Ai~GG----vV~~d--~~Wekg~l~-v~~~~i~~~~~~~~~~~I~ 156 (221)
T PF04283_consen 106 ALLNGKEVLVKHP-------AIVGG----VVQQD--AEWEKGKLK-VTKKGIWFASSSGQFVSID 156 (221)
T ss_pred HhhCCeEEEEECC-------ceecc----eeccC--CccccceEE-EeccceEEEecCCceeEEE
Confidence 4689999999875 77777 44443 369998854 4566788888899998886
No 293
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=22.50 E-value=2.7e+02 Score=20.83 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHh-cCCCceeEEEeecCCCC
Q 010600 314 NVADTVAVIDFLAARY-ANRPSLAAIELINEPLA 346 (506)
Q Consensus 314 ~~~~~~~~w~~lA~ry-k~~~~V~g~eL~NEP~~ 346 (506)
..+.+++.++.+++.. +..|..++++++-.+..
T Consensus 14 ~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 47 (78)
T PF03992_consen 14 KEEEFLAAFQELAEATLRKEPGCLSYELYRSLDD 47 (78)
T ss_dssp GHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Confidence 4578888999998877 79999999999875543
No 294
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=22.42 E-value=1.1e+02 Score=31.10 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHcCCEEEEecCCC
Q 010600 265 GSSKVLDNAFDWAEKYGVKVIVDLHAA 291 (506)
Q Consensus 265 ~~l~~ld~~v~~a~k~Gi~VILDlH~~ 291 (506)
+.+.-++++.+.|+++|+.+|+|--+.
T Consensus 152 G~~~~~~~I~~l~~~~~~~~ivD~a~~ 178 (353)
T TIGR03235 152 GSIQPIREIAEVLEAHEAFFHVDAAQV 178 (353)
T ss_pred eeccCHHHHHHHHHHcCCEEEEEchhh
Confidence 445558999999999999999997544
No 295
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=22.34 E-value=8e+02 Score=24.59 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCC
Q 010600 267 SKVLDNAFDWAEKYGVKVIVDLHAAP 292 (506)
Q Consensus 267 l~~ld~~v~~a~k~Gi~VILDlH~~p 292 (506)
...|..-|+.|++.|++|+|.+=...
T Consensus 58 c~~~~~dI~~cq~~G~KVlLSIGG~~ 83 (280)
T cd02877 58 CPQLGADIKHCQSKGKKVLLSIGGAG 83 (280)
T ss_pred chhHHHHHHHHHHCCCEEEEEccCCC
Confidence 45788999999999999999886543
No 296
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=22.30 E-value=9.9e+02 Score=27.81 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=84.3
Q ss_pred ccCCHHHHHHHHhCC------CCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCC-----
Q 010600 226 SYITDEDFKFLSSNG------INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS----- 294 (506)
Q Consensus 226 ~~ite~d~~~ia~~G------~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~----- 294 (506)
++-+|+++..+.+-. +.++++-+.+|. +.-..-.++...+...+.+++..++.||++|+-++-.-..
T Consensus 275 ~~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~~--~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~ 352 (772)
T COG1501 275 TYYDEDEVLEFIDEMRERDIPLDVFVLDIDFWM--DNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLF 352 (772)
T ss_pred ccccHHHHHHHHhhcccccCcceEEEEeehhhh--ccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchH
Confidence 345577766654332 556666654221 1111123455556667799999999999999877633111
Q ss_pred ----CCCCCCC---CCCCCCCCCC------hhhHHHHHHHHH-HHHHHhcCCCceeEEEeecCCCCCCC-------ChHH
Q 010600 295 ----QNGNEHS---ATRDGFQEWG------DSNVADTVAVID-FLAARYANRPSLAAIELINEPLAPGV-------ALDT 353 (506)
Q Consensus 295 ----qng~~~s---g~~~g~~~W~------~~~~~~~~~~w~-~lA~ryk~~~~V~g~eL~NEP~~~~~-------~~~~ 353 (506)
.+|.... |..--...|. +.......+.|. ...+.+.+.....-|-=+|||..... +...
T Consensus 353 ~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~ 432 (772)
T COG1501 353 KEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEE 432 (772)
T ss_pred HHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHH
Confidence 1121111 1110112232 444556677777 56566777665555677899975321 2222
Q ss_pred -----HHHHHHHHHHHHHhcCCC-eEEEEe
Q 010600 354 -----LKSYYKAGYDAVRKYTST-AYVIMS 377 (506)
Q Consensus 354 -----~~~~~~~~~~aIR~~~p~-~~Viv~ 377 (506)
-.-+++..+++.|+..|+ .+++++
T Consensus 433 ~~N~yp~~~~~a~~~~~~~~~~~~r~~~ls 462 (772)
T COG1501 433 MHNLYPLLYAKAVYEALKELGGNERPFILS 462 (772)
T ss_pred HhcchhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 234678888999999654 666665
No 297
>PRK10673 acyl-CoA esterase; Provisional
Probab=22.18 E-value=2e+02 Score=27.16 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCceeEEEeec----CCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeCCCC
Q 010600 321 VIDFLAARYANRPSLAAIELIN----EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 381 (506)
Q Consensus 321 ~w~~lA~ryk~~~~V~g~eL~N----EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 381 (506)
.|..++.++.+.-.|+.+|+-. ++. ..-.+..+.+++...|...+...+++++-.+|
T Consensus 31 ~~~~~~~~l~~~~~vi~~D~~G~G~s~~~----~~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~G 91 (255)
T PRK10673 31 NLGVLARDLVNDHDIIQVDMRNHGLSPRD----PVMNYPAMAQDLLDTLDALQIEKATFIGHSMG 91 (255)
T ss_pred HHHHHHHHHhhCCeEEEECCCCCCCCCCC----CCCCHHHHHHHHHHHHHHcCCCceEEEEECHH
Confidence 3455555555555888898853 211 11245666777777777777677777775454
No 298
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=22.03 E-value=1.5e+02 Score=32.32 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=34.3
Q ss_pred HHHhcCCCcEEEEecCCCCCCC---------CCCHHHHHHHHHHHHHHHh-c--CCCcEEEEeccc
Q 010600 434 AVTTSNGPLTFVGEWTCEWNVK---------DASKQDYQRFANAQLDVYG-R--ATFGWAYWAHKC 487 (506)
Q Consensus 434 ~~~~~~gp~v~vGEfg~~~~~~---------~~~~~~~~~~~~~q~~~~~-~--~~~Gw~~W~~k~ 487 (506)
.+.++.+.|++|.|-|...... ....+.++.+++++.++.+ . .-.|.++|++-.
T Consensus 362 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~D 427 (478)
T PRK09593 362 TIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCID 427 (478)
T ss_pred HHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchH
Confidence 3333444569999999763211 0112455677888877774 3 457999999876
No 299
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=21.92 E-value=2.4e+02 Score=28.27 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHc-CCEEEEecCCC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY-GVKVIVDLHAA 291 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~-Gi~VILDlH~~ 291 (506)
+.--+.|.+.|++++..--. .+. ..|...+-.-...+-+.++++ +|+++||+|..
T Consensus 114 ~~L~~~Le~~Gi~v~h~~t~----~d~---~~y~~sY~~Sr~tv~~~l~~~p~i~~~iDiHRD 169 (268)
T PF07454_consen 114 DRLAQELEKYGIGVIHDKTI----HDY---PSYNQSYKRSRETVKKALKENPDIKVVIDIHRD 169 (268)
T ss_pred HHHHHHHHHCCCcEEEeCCC----CCc---chhHHHHHHHHHHHHHHHHHCCCceEEEEecCC
Confidence 45566789999999886331 111 144444545555555666777 78999999965
No 300
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=21.91 E-value=4.5e+02 Score=27.39 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC----ccchHHHHHHHHHHHHHcCCE-EEEecCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF----VGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPGSQNGNEHS 301 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~----~~~~l~~ld~~v~~a~k~Gi~-VILDlH~~pg~qng~~~s 301 (506)
.+|+++++.++++|++.+-+-+ ... ++.-.... ....++..-+.++.|++.||. |=+++-. |
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~l--ET~-~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~--G-------- 225 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQ--ETY-NEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALL--G-------- 225 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEe--ecC-CHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEE--e--------
Confidence 3789999999999999665533 211 11000000 012445555578889998986 4332221 1
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHhcCCC-cee--EEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEeC
Q 010600 302 ATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLA--AIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 378 (506)
Q Consensus 302 g~~~g~~~W~~~~~~~~~~~w~~lA~ryk~~~-~V~--g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 378 (506)
-..|. ...-.+....+.|-.+|...+ .|- -+-....|..+.. ..=..-..+.+.++|-..|+.-|.+++
T Consensus 226 -----l~e~~-~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~--~l~~~~~~~~i~~~R~~~P~~~i~~s~ 297 (366)
T TIGR02351 226 -----LDDWR-TDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKV--IVTDRELVQIICAYRLFDPFVEISLST 297 (366)
T ss_pred -----CchhH-HHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCC--cCCHHHHHHHHHHHHHhCcccccEEec
Confidence 01111 222234455666777776643 221 1111111221110 011234557788899999999999986
Q ss_pred CC
Q 010600 379 RL 380 (506)
Q Consensus 379 ~~ 380 (506)
+-
T Consensus 298 g~ 299 (366)
T TIGR02351 298 RE 299 (366)
T ss_pred CC
Confidence 43
No 301
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=21.81 E-value=1.4e+02 Score=32.41 Aligned_cols=59 Identities=7% Similarity=-0.127 Sum_probs=36.0
Q ss_pred HHHhcCCCcEEEEecCCCCCC----CC-----CCHHHHHHHHHHHHHHH-hc--CCCcEEEEecccCCCCCC
Q 010600 434 AVTTSNGPLTFVGEWTCEWNV----KD-----ASKQDYQRFANAQLDVY-GR--ATFGWAYWAHKCEANHWS 493 (506)
Q Consensus 434 ~~~~~~gp~v~vGEfg~~~~~----~~-----~~~~~~~~~~~~q~~~~-~~--~~~Gw~~W~~k~~~~~Ws 493 (506)
.+.+..+.|++|.|-|..... ++ ...+.++++++++..+. ++ .-.|.++|++-. +-.|.
T Consensus 361 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~D-n~Ew~ 431 (476)
T PRK09589 361 WFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCID-LVSAG 431 (476)
T ss_pred HHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccc-ccccc
Confidence 333444556999999976321 11 11234566777777776 43 457999999866 34454
No 302
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=21.49 E-value=2e+02 Score=27.66 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHH-cCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC---hhhHHHHHHHHHHHHHHhc-CCCceeEEEe
Q 010600 266 SSKVLDNAFDWAEK-YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG---DSNVADTVAVIDFLAARYA-NRPSLAAIEL 340 (506)
Q Consensus 266 ~l~~ld~~v~~a~k-~Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~---~~~~~~~~~~w~~lA~ryk-~~~~V~g~eL 340 (506)
+-+.|+++++...+ +|--++||+|..+....+.... ..+.|. ........++.+.+.+.++ ..---+ -
T Consensus 115 yh~~l~~~l~~~~~~~g~~illd~HS~~~~~~~~~~~----~~~~~~lG~~~~~s~~~~l~~~~~~~l~~~~g~~v---~ 187 (222)
T PF05013_consen 115 YHRALAALLERLRARFGKVILLDCHSMPPVPPGREDD----PRPDIVLGTLHGPSCDPELVDALAEALEASDGYSV---R 187 (222)
T ss_dssp HHHHHHHHHHHHHHCCS-EEEEEEEEE-TCCCCCCT--------SECEECCTTTSS-HHHHHHHHHHCC-CTTS-E---E
T ss_pred HHHHHHHHHHHHHHhcCceEEEEeccCCCcccccccC----CCCCeEEEcCCCCCCCHHHHHHHHHHhhcccCcEE---e
Confidence 35566667765554 6888899999987553332100 122333 0010112356666666666 333122 2
Q ss_pred ecCCCCC
Q 010600 341 INEPLAP 347 (506)
Q Consensus 341 ~NEP~~~ 347 (506)
.|+|...
T Consensus 188 ~N~Py~G 194 (222)
T PF05013_consen 188 VNEPYSG 194 (222)
T ss_dssp ETSS--G
T ss_pred eCCCCCC
Confidence 5999863
No 303
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=21.47 E-value=1.7e+02 Score=31.55 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 288 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDl 288 (506)
+.+++++..++.|++.|||-.+-. ....+..+|+.|+++|+.|.+.+
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~ln--------------d~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALN--------------DVRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecC--------------cHHHHHHHHHHHHHcCCeEEEEE
Confidence 457889999999999999954321 11347889999999999887655
No 304
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=21.38 E-value=7e+02 Score=25.09 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 010600 231 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 290 (506)
Q Consensus 231 ~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH~ 290 (506)
+..+..|+.|.+.+|--. +.....|..|-+-..+.|+..-+.+.++|+.|+-.+..
T Consensus 63 ~~A~~vk~~Ga~~lRGga----fKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~ 118 (286)
T COG2876 63 ETAESVKAAGAKALRGGA----FKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD 118 (286)
T ss_pred HHHHHHHHcchhhccCCc----CCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 455667899999999732 22223333333335677777778899999999987763
No 305
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.22 E-value=1.9e+02 Score=28.60 Aligned_cols=50 Identities=20% Similarity=0.115 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 228 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 228 ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
--++.++.++++||++|=|.-+.-. =..+...++|+.+++.|++|+-.+.
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~------------l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTID------------LPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred hHHHHHHHHHHcCCCEEEecCCcee------------CCHHHHHHHHHHHHHCCCEEeeccc
Confidence 3478899999999999998554311 1235677889999999999998876
No 306
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=21.17 E-value=2.5e+02 Score=27.56 Aligned_cols=48 Identities=25% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 010600 230 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 230 e~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
++.++..+++||++|=|.-+.-. . ..+...++|+.++++|++|+-.+.
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~---------i---~~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSME---------I---SLEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccC---------C---CHHHHHHHHHHHHhCCCeEecccc
Confidence 67788999999999998654311 1 236677899999999999987665
No 307
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.85 E-value=7.9e+02 Score=26.06 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHhCC--CCEEEeCcCcccccCCCCCCCCc-cchHHHHHHHHHHHHHc--CCEEEEec
Q 010600 227 YITDEDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKY--GVKVIVDL 288 (506)
Q Consensus 227 ~ite~d~~~ia~~G--~N~VRIPv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~k~--Gi~VILDl 288 (506)
.++++.++.|++.| +.++-||+- ...+..- .... ....+.+.++++.++++ ++.+..|+
T Consensus 229 ~~~~ell~~~~~~~~~~~~l~iglE--S~s~~vL-k~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~ 292 (430)
T TIGR01125 229 ELTDDVIDLMAEGPKVLPYLDIPLQ--HASDRIL-KLMRRPGSGEQQLDFIERLREKCPDAVLRTTF 292 (430)
T ss_pred cCCHHHHHHHhhCCcccCceEeCCC--CCCHHHH-hhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEE
Confidence 47889999999985 788888763 1211000 0000 12456777888889888 55554443
No 308
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.77 E-value=2.3e+02 Score=25.21 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=49.7
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDG 306 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~--~~~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~~~g 306 (506)
+++.++.|++.|+..|.+.+.-. ++.....+ ....++..-+.++.+.++|+.|.+.+--.++.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~------------ 151 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSG---DEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGD------------ 151 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccC---CHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCC------------
Confidence 68999999999999999877421 11100001 12345666667777888888887776643321
Q ss_pred CCCCChhhHHHHHHHHHHHHHHh
Q 010600 307 FQEWGDSNVADTVAVIDFLAARY 329 (506)
Q Consensus 307 ~~~W~~~~~~~~~~~w~~lA~ry 329 (506)
...+...+.++.+++.+
T Consensus 152 ------~~~~~~~~~~~~l~~~~ 168 (204)
T cd01335 152 ------EDEEDDLEELELLAEFR 168 (204)
T ss_pred ------ChhHHHHHHHHHHHhhc
Confidence 11345666667776655
No 309
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.60 E-value=1.1e+02 Score=26.90 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=6.3
Q ss_pred CCCceeeEeecCcee
Q 010600 30 IKLPLRAVNLGNWLV 44 (506)
Q Consensus 30 ~~~~~~~~~~~~~~~ 44 (506)
...+++| .+|++
T Consensus 30 G~~P~~g---t~w~~ 41 (130)
T PF12273_consen 30 GLQPIYG---TRWMA 41 (130)
T ss_pred CCCCcCC---ceecC
Confidence 4446665 45555
No 310
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=20.59 E-value=8.9e+02 Score=24.72 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=53.0
Q ss_pred CCEEEEecCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhcC-CCceeEEEeecCCCCCCCChHHHHHHHH
Q 010600 281 GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN-RPSLAAIELINEPLAPGVALDTLKSYYK 359 (506)
Q Consensus 281 Gi~VILDlH~~pg~qng~~~sg~~~g~~~W~~~~~~~~~~~w~~lA~ryk~-~~~V~g~eL~NEP~~~~~~~~~~~~~~~ 359 (506)
...+|+..|..|-+.-. .| +.+.++..+..+.|+++... .+..++|+----|. +-+....+
T Consensus 188 ~~~llfSaHglP~~~~~-------~G-----d~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~------~Wl~P~~~ 249 (322)
T TIGR00109 188 NAVLLFSAHGLPQSYVD-------EG-----DPYPAECEATTRLIAEKLGFPNEYRLTWQSRVGPE------PWLGPYTE 249 (322)
T ss_pred CcEEEEeCCCCchhHhh-------CC-----CChHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCC------CcCCCCHH
Confidence 46899999999854210 01 23556777788888888873 44567777543332 12344566
Q ss_pred HHHHHHHhcCCCeEEEEeCCCC
Q 010600 360 AGYDAVRKYTSTAYVIMSNRLG 381 (506)
Q Consensus 360 ~~~~aIR~~~p~~~Viv~~~~~ 381 (506)
+.++.+.+.+..++++++-++-
T Consensus 250 ~~l~~l~~~G~k~V~vvP~gFv 271 (322)
T TIGR00109 250 ELLEKLGEQGVQHIVVVPIGFT 271 (322)
T ss_pred HHHHHHHHcCCceEEEECCccc
Confidence 6777777778788888876554
No 311
>PRK05839 hypothetical protein; Provisional
Probab=20.55 E-value=2.5e+02 Score=29.09 Aligned_cols=24 Identities=25% Similarity=-0.002 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecC
Q 010600 266 SSKVLDNAFDWAEKYGVKVIVDLH 289 (506)
Q Consensus 266 ~l~~ld~~v~~a~k~Gi~VILDlH 289 (506)
..+.+.++++.|+++|+.||+|-.
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~ 196 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDEC 196 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccc
Confidence 578899999999999999999864
No 312
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.51 E-value=3e+02 Score=28.49 Aligned_cols=124 Identities=17% Similarity=0.257 Sum_probs=75.0
Q ss_pred cCCHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCcc---chHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCC
Q 010600 227 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVG---GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 303 (506)
Q Consensus 227 ~ite~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~---~~l~~ld~~v~~a~k~Gi~VILDlH~~pg~qng~~~sg~ 303 (506)
-.+++-++.|+++|++-+-+.++ ..||.......+ -.++.+.++++++...+|.|+|..-..||-
T Consensus 201 ~L~~~lv~eLeeAGLdRiNlSv~---aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~--------- 268 (414)
T COG2100 201 LLSKKLVDELEEAGLDRINLSVD---ALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGV--------- 268 (414)
T ss_pred eccHHHHHHHHHhCCceEEeecc---cCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCc---------
Confidence 46789999999999998777664 344432111111 157888889999999999999998888864
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHh--cCCCceeEEEeecCCCCCCC-----ChHHHHHHHHHHHHHHHhcCCCeEE
Q 010600 304 RDGFQEWGDSNVADTVAVIDFLAARY--ANRPSLAAIELINEPLAPGV-----ALDTLKSYYKAGYDAVRKYTSTAYV 374 (506)
Q Consensus 304 ~~g~~~W~~~~~~~~~~~w~~lA~ry--k~~~~V~g~eL~NEP~~~~~-----~~~~~~~~~~~~~~aIR~~~p~~~V 374 (506)
|-+.+.+++++-++-= |..|. +|++.. +|+..+- ..=.|++||..+-+.=.+.+-.-+|
T Consensus 269 ----------ND~E~~~iIe~A~~iGaGkk~p~-lgiQky-ipyk~GRkp~~~k~~~fkeFYrwLrelEketg~kpLi 334 (414)
T COG2100 269 ----------NDDEMPKIIEWAREIGAGKKWPP-LGIQKY-IPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVKPLI 334 (414)
T ss_pred ----------ChHHHHHHHHHHHHhCCCCCCCC-cceEEe-eeecccCCccccccCcHHHHHHHHHHHHHHhCCCccc
Confidence 1233444444444321 22333 346644 3443221 1224777777766666665543333
No 313
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=20.51 E-value=63 Score=28.31 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=30.5
Q ss_pred CcCCccCCCCccccCceeeEeeeeceeEEEEecCCCceEEecC
Q 010600 51 PSRFDDIPNKDLLDGTQVQFMSTKFQKYIAAESGGGTIVVANR 93 (506)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~ae~~g~~~~~anr 93 (506)
|..|.-+.-+|.-|||.|.++ +.|..=-|||.-..+++.-|.
T Consensus 39 P~~FkVvalg~V~DGT~Vtv~-AGNDEn~~aElRN~tavmknq 80 (135)
T PF00853_consen 39 PVAFKVVALGDVPDGTLVTVM-AGNDENYCAELRNATAVMKNQ 80 (135)
T ss_dssp SS-EEEEESSS-STTEEEEEE-EEESSCSSBBEES-EEEEETT
T ss_pred CCceeEEEEEEcCCCcEEEEE-ecCCchhhhhhhchhhhhhcc
Confidence 555554444577899999999 578888899988888888887
No 314
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.06 E-value=4.8e+02 Score=23.18 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCCceeEEEe-ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010600 317 DTVAVIDFLAARYANRPSLAAIEL-INEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 377 (506)
Q Consensus 317 ~~~~~w~~lA~ryk~~~~V~g~eL-~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 377 (506)
.....+......+ .|.++.+.+ .|+-.. +.+.+.+.+.++++++.+|+..|+..|++-
T Consensus 37 ~~~~~~~~~~~~~--~p~~vvi~~G~ND~~~-~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 37 DCLHYFDRLVLPY--QPRRVVLYAGDNDLAS-GRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHHHHHHhhhccC--CCCEEEEEEecCcccC-CCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 3444444444322 454443432 676432 456888999999999999999887655543
No 315
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=20.03 E-value=1.6e+02 Score=30.61 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=33.8
Q ss_pred CHHHHHHHHhCCCCEEEeCcCcccccCCCCCCCCccchHHHHHHHHHHHHH--cCCEEEEecCCC
Q 010600 229 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEK--YGVKVIVDLHAA 291 (506)
Q Consensus 229 te~d~~~ia~~G~N~VRIPv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~k--~Gi~VILDlH~~ 291 (506)
+.+.++.|-+.|+|++||-+++- ++ +...+.++.+=+.+++ ..+.+++|+-..
T Consensus 16 ~~e~l~~li~aGm~v~RiN~SHg---~~-------e~~~~~i~~iR~a~~~~~~~i~IllDl~GP 70 (348)
T PF00224_consen 16 SVEVLRKLIEAGMNVARINFSHG---TH-------EEHKEIIENIREAEKELGKPIAILLDLKGP 70 (348)
T ss_dssp SHHHHHHHHHHTEEEEEEETTSS----H-------HHHHHHHHHHHHHHHHTTTS-EEEEEE-TS
T ss_pred CHHHHHHHHHhccEEEEEeeecC---CH-------HHHHHHHHHHHHHHhccCCceEEEeccCCC
Confidence 46789999999999999987641 11 2244444444444444 348999999854
Done!