Query 010602
Match_columns 506
No_of_seqs 421 out of 2143
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0883 Cyclophilin type, U bo 100.0 3E-133 7E-138 1002.6 27.2 422 1-501 1-430 (518)
2 KOG0881 Cyclophilin type pepti 100.0 1.3E-50 2.8E-55 352.2 9.8 155 348-502 9-163 (164)
3 KOG0546 HSP90 co-chaperone CPR 100.0 1.7E-46 3.7E-51 378.2 12.0 153 348-501 10-177 (372)
4 KOG0884 Similar to cyclophilin 100.0 5.8E-46 1.3E-50 321.5 12.4 153 350-502 2-155 (161)
5 KOG0882 Cyclophilin-related pe 100.0 4.5E-46 9.8E-51 380.9 12.7 154 349-502 405-558 (558)
6 cd01923 cyclophilin_RING cyclo 100.0 6.1E-45 1.3E-49 339.1 18.8 153 350-502 1-153 (159)
7 cd01928 Cyclophilin_PPIL3_like 100.0 6.5E-45 1.4E-49 336.8 18.7 152 350-501 2-153 (153)
8 KOG0880 Peptidyl-prolyl cis-tr 100.0 4.1E-45 8.9E-50 340.4 16.1 145 355-500 51-200 (217)
9 cd01927 cyclophilin_WD40 cyclo 100.0 1.3E-44 2.8E-49 333.1 17.7 147 353-499 2-148 (148)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 1.2E-44 2.6E-49 333.9 16.8 148 351-502 2-157 (158)
11 cd01922 cyclophilin_SpCYP2_lik 100.0 8.9E-44 1.9E-48 326.8 17.3 145 353-498 2-146 (146)
12 cd01921 cyclophilin_RRM cyclop 100.0 6.7E-43 1.5E-47 327.5 18.1 151 353-503 2-160 (166)
13 cd01925 cyclophilin_CeCYP16-li 100.0 2.1E-42 4.5E-47 325.6 19.2 158 345-502 2-160 (171)
14 KOG0879 U-snRNP-associated cyc 100.0 3.9E-42 8.6E-47 302.4 10.1 144 355-499 22-174 (177)
15 PRK10791 peptidyl-prolyl cis-t 100.0 1.2E-39 2.5E-44 304.9 18.1 149 351-502 2-163 (164)
16 PRK10903 peptidyl-prolyl cis-t 100.0 1.9E-39 4.2E-44 310.1 18.9 154 346-502 26-189 (190)
17 cd01926 cyclophilin_ABH_like c 100.0 2E-39 4.3E-44 303.5 18.4 149 349-499 3-163 (164)
18 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.9E-40 6.3E-45 331.7 13.2 160 344-503 8-168 (439)
19 PLN03149 peptidyl-prolyl isome 100.0 3.4E-39 7.5E-44 307.5 18.4 145 356-501 31-185 (186)
20 PTZ00221 cyclophilin; Provisio 100.0 7E-39 1.5E-43 315.7 19.0 151 348-502 52-219 (249)
21 cd01920 cyclophilin_EcCYP_like 100.0 4.2E-39 9E-44 298.7 16.4 144 353-499 2-155 (155)
22 PTZ00060 cyclophilin; Provisio 100.0 3.6E-38 7.9E-43 299.8 19.1 145 355-501 27-181 (183)
23 cd00317 cyclophilin cyclophili 100.0 1.5E-37 3.3E-42 284.3 17.6 145 353-498 2-146 (146)
24 KOG0111 Cyclophilin-type pepti 100.0 2.4E-38 5.2E-43 298.9 10.8 142 356-499 149-294 (298)
25 KOG0415 Predicted peptidyl pro 100.0 5.9E-37 1.3E-41 305.7 13.5 154 350-503 2-163 (479)
26 PF00160 Pro_isomerase: Cyclop 100.0 7.7E-36 1.7E-40 275.5 17.1 150 350-501 1-155 (155)
27 cd01924 cyclophilin_TLP40_like 100.0 4.3E-36 9.4E-41 283.8 14.7 129 354-482 3-165 (176)
28 KOG3039 Uncharacterized conser 100.0 1.4E-34 3.1E-39 276.8 10.1 156 3-162 4-281 (303)
29 PF04641 Rtf2: Rtf2 RING-finge 100.0 8.1E-33 1.7E-37 276.8 10.2 145 31-178 26-188 (260)
30 KOG0865 Cyclophilin type pepti 100.0 7.6E-31 1.6E-35 244.1 8.0 144 355-500 15-165 (167)
31 KOG3113 Uncharacterized conser 99.9 1.5E-22 3.2E-27 195.1 8.0 119 38-160 33-167 (293)
32 smart00504 Ubox Modified RING 99.2 4.8E-12 1E-16 99.3 3.4 62 40-101 2-63 (63)
33 PF04564 U-box: U-box domain; 99.2 2.2E-12 4.7E-17 105.1 -0.1 65 37-101 2-67 (73)
34 KOG0289 mRNA splicing factor [ 98.3 2.1E-07 4.5E-12 97.0 2.3 54 41-94 2-56 (506)
35 smart00504 Ubox Modified RING 98.3 9.1E-07 2E-11 69.2 4.1 54 100-159 1-54 (63)
36 PF11789 zf-Nse: Zinc-finger o 98.3 3.4E-07 7.4E-12 71.1 1.6 41 40-80 12-55 (57)
37 KOG0826 Predicted E3 ubiquitin 97.8 6.9E-06 1.5E-10 83.3 2.1 55 38-92 299-354 (357)
38 KOG0882 Cyclophilin-related pe 97.8 2E-05 4.4E-10 82.9 5.4 161 341-502 91-262 (558)
39 KOG0320 Predicted E3 ubiquitin 97.6 3.4E-05 7.4E-10 72.3 2.5 58 98-159 129-186 (187)
40 KOG0823 Predicted E3 ubiquitin 97.6 4.6E-05 9.9E-10 74.4 3.3 54 38-91 46-102 (230)
41 KOG0317 Predicted E3 ubiquitin 97.6 4.2E-05 9E-10 76.7 3.0 60 32-91 232-291 (293)
42 KOG4642 Chaperone-dependent E3 97.5 2.6E-05 5.7E-10 76.7 1.2 65 33-97 205-270 (284)
43 PLN03208 E3 ubiquitin-protein 97.5 9.9E-05 2.1E-09 70.7 4.5 75 38-124 17-91 (193)
44 KOG0320 Predicted E3 ubiquitin 97.1 0.00031 6.8E-09 66.0 2.8 61 33-93 125-187 (187)
45 TIGR00570 cdk7 CDK-activating 97.1 0.00035 7.6E-09 71.5 2.9 55 99-156 2-59 (309)
46 KOG2164 Predicted E3 ubiquitin 97.0 0.00037 8.1E-09 74.8 3.1 57 40-96 187-248 (513)
47 KOG0978 E3 ubiquitin ligase in 97.0 0.00016 3.4E-09 80.9 -0.4 56 99-159 642-697 (698)
48 PF13445 zf-RING_UBOX: RING-ty 97.0 0.0006 1.3E-08 50.0 2.6 33 103-136 1-33 (43)
49 PF04564 U-box: U-box domain; 96.9 0.0012 2.5E-08 53.8 4.3 54 99-157 3-56 (73)
50 PLN03208 E3 ubiquitin-protein 96.8 0.0014 3.1E-08 62.8 4.6 59 98-160 16-88 (193)
51 PF13923 zf-C3HC4_2: Zinc fing 96.7 0.0017 3.8E-08 46.1 3.3 37 42-78 1-38 (39)
52 PF13923 zf-C3HC4_2: Zinc fing 96.3 0.0063 1.4E-07 43.2 4.1 39 103-146 1-39 (39)
53 TIGR00599 rad18 DNA repair pro 96.3 0.0026 5.6E-08 67.7 2.8 45 39-83 26-70 (397)
54 PF15227 zf-C3HC4_4: zinc fing 96.2 0.0046 1E-07 45.0 3.2 31 42-72 1-31 (42)
55 PF13639 zf-RING_2: Ring finge 95.9 0.0076 1.6E-07 43.8 3.0 42 102-146 2-43 (44)
56 TIGR03268 methan_mark_3 putati 95.9 0.026 5.6E-07 61.0 8.1 102 360-482 203-304 (503)
57 PF11789 zf-Nse: Zinc-finger o 95.8 0.011 2.4E-07 46.0 3.8 46 99-147 10-55 (57)
58 PF14634 zf-RING_5: zinc-RING 95.8 0.0066 1.4E-07 44.4 2.3 43 102-147 1-43 (44)
59 PF13920 zf-C3HC4_3: Zinc fing 95.8 0.013 2.9E-07 43.8 4.1 47 100-152 2-49 (50)
60 COG5574 PEX10 RING-finger-cont 95.7 0.0058 1.3E-07 61.0 2.3 55 37-91 208-269 (271)
61 KOG3039 Uncharacterized conser 95.7 0.0073 1.6E-07 59.6 2.9 54 39-92 221-278 (303)
62 PRK00969 hypothetical protein; 95.7 0.03 6.6E-07 60.7 7.8 102 360-482 206-307 (508)
63 KOG2164 Predicted E3 ubiquitin 95.6 0.0056 1.2E-07 66.0 1.7 59 100-162 186-247 (513)
64 KOG0317 Predicted E3 ubiquitin 95.4 0.011 2.5E-07 59.6 3.2 56 98-159 237-292 (293)
65 PHA02929 N1R/p28-like protein; 95.4 0.011 2.3E-07 58.9 3.0 45 38-82 173-225 (238)
66 TIGR00599 rad18 DNA repair pro 95.3 0.014 2.9E-07 62.3 3.3 52 98-155 24-75 (397)
67 PF13639 zf-RING_2: Ring finge 95.0 0.023 5.1E-07 41.3 3.0 39 40-78 1-42 (44)
68 KOG0826 Predicted E3 ubiquitin 95.0 0.01 2.2E-07 60.8 1.5 56 100-160 300-355 (357)
69 PF04641 Rtf2: Rtf2 RING-finge 94.5 0.033 7.2E-07 56.2 3.7 58 38-124 112-173 (260)
70 PF13445 zf-RING_UBOX: RING-ty 94.4 0.044 9.5E-07 40.2 3.2 31 42-73 1-35 (43)
71 KOG2979 Protein involved in DN 94.4 0.014 3E-07 58.1 0.7 33 40-72 177-210 (262)
72 PF00097 zf-C3HC4: Zinc finger 93.5 0.11 2.3E-06 37.0 3.6 31 42-72 1-32 (41)
73 COG4070 Predicted peptidyl-pro 93.3 0.15 3.3E-06 53.6 5.9 99 359-482 204-306 (512)
74 PHA02929 N1R/p28-like protein; 93.3 0.061 1.3E-06 53.6 2.8 51 99-151 173-227 (238)
75 PF12903 DUF3830: Protein of u 93.2 0.18 3.9E-06 46.6 5.5 107 358-481 8-130 (147)
76 PF13920 zf-C3HC4_3: Zinc fing 92.7 0.16 3.5E-06 37.9 3.8 44 40-83 3-47 (50)
77 cd00162 RING RING-finger (Real 92.6 0.12 2.6E-06 36.3 2.9 43 102-149 1-44 (45)
78 PRK00969 hypothetical protein; 92.5 0.95 2.1E-05 49.4 10.7 117 348-483 50-169 (508)
79 PF00097 zf-C3HC4: Zinc finger 91.5 0.29 6.2E-06 34.7 3.8 31 103-136 1-31 (41)
80 smart00184 RING Ring finger. E 91.2 0.21 4.6E-06 33.6 2.7 37 42-78 1-38 (39)
81 KOG0978 E3 ubiquitin ligase in 91.1 0.098 2.1E-06 59.1 1.5 55 39-93 643-698 (698)
82 TIGR03268 methan_mark_3 putati 91.1 2.1 4.6E-05 46.7 11.3 115 348-482 46-165 (503)
83 KOG0823 Predicted E3 ubiquitin 91.0 0.22 4.7E-06 49.1 3.6 61 96-160 43-104 (230)
84 COG5574 PEX10 RING-finger-cont 90.5 0.16 3.5E-06 50.8 2.3 55 98-158 213-269 (271)
85 PF15227 zf-C3HC4_4: zinc fing 90.1 0.33 7.1E-06 35.2 3.0 31 103-137 1-31 (42)
86 cd00162 RING RING-finger (Real 89.6 0.42 9.1E-06 33.4 3.3 39 41-79 1-41 (45)
87 COG4070 Predicted peptidyl-pro 88.8 1.4 3.1E-05 46.6 7.6 38 359-396 377-416 (512)
88 KOG2042 Ubiquitin fusion degra 88.6 0.16 3.4E-06 59.2 0.6 68 36-103 867-935 (943)
89 PF02891 zf-MIZ: MIZ/SP-RING z 88.0 0.62 1.3E-05 35.2 3.3 33 41-73 4-39 (50)
90 COG5113 UFD2 Ubiquitin fusion 87.6 0.42 9.1E-06 53.2 3.0 63 36-98 851-914 (929)
91 KOG2817 Predicted E3 ubiquitin 86.4 0.5 1.1E-05 50.0 2.7 49 100-150 334-384 (394)
92 PHA02926 zinc finger-like prot 85.8 0.46 9.9E-06 46.8 1.9 51 99-151 169-230 (242)
93 smart00184 RING Ring finger. E 85.0 0.67 1.5E-05 31.1 2.0 29 103-135 1-29 (39)
94 KOG2177 Predicted E3 ubiquitin 84.6 0.3 6.5E-06 47.9 0.1 34 38-71 12-45 (386)
95 PF12678 zf-rbx1: RING-H2 zinc 84.0 1.4 3.1E-05 35.7 3.8 41 39-79 19-72 (73)
96 KOG0289 mRNA splicing factor [ 83.4 0.73 1.6E-05 49.3 2.3 63 101-168 1-63 (506)
97 PF10367 Vps39_2: Vacuolar sor 83.1 0.56 1.2E-05 40.0 1.1 31 100-132 78-108 (109)
98 COG5432 RAD18 RING-finger-cont 82.6 0.64 1.4E-05 47.3 1.4 42 39-80 25-66 (391)
99 COG5222 Uncharacterized conser 82.6 0.64 1.4E-05 47.3 1.5 37 34-71 270-307 (427)
100 COG5109 Uncharacterized conser 82.2 0.81 1.8E-05 47.0 2.0 56 100-156 336-392 (396)
101 PF06416 DUF1076: Protein of u 80.8 1.7 3.7E-05 38.2 3.2 52 39-90 40-97 (113)
102 KOG1813 Predicted E3 ubiquitin 80.4 1.1 2.4E-05 45.8 2.2 45 36-81 239-283 (313)
103 KOG2879 Predicted E3 ubiquitin 80.1 1.4 3.1E-05 44.5 2.9 51 98-151 237-287 (298)
104 KOG3800 Predicted E3 ubiquitin 77.0 1.7 3.6E-05 44.4 2.3 58 102-162 2-64 (300)
105 KOG0287 Postreplication repair 75.9 0.73 1.6E-05 47.8 -0.5 50 39-88 23-72 (442)
106 COG5152 Uncharacterized conser 75.2 1.4 2.9E-05 42.7 1.1 44 36-80 194-237 (259)
107 PF12678 zf-rbx1: RING-H2 zinc 74.5 2.6 5.6E-05 34.2 2.5 43 102-146 21-72 (73)
108 KOG0396 Uncharacterized conser 74.2 1.2 2.6E-05 46.8 0.6 79 75-156 306-384 (389)
109 KOG0287 Postreplication repair 74.2 1.2 2.7E-05 46.1 0.6 50 100-155 23-72 (442)
110 KOG1002 Nucleotide excision re 74.1 1.3 2.8E-05 48.4 0.8 49 41-111 538-586 (791)
111 COG5627 MMS21 DNA repair prote 73.6 1.4 3.1E-05 43.5 0.8 40 40-79 190-232 (275)
112 KOG1645 RING-finger-containing 71.9 1.6 3.4E-05 46.4 0.8 58 101-159 5-64 (463)
113 KOG0297 TNF receptor-associate 71.5 2.4 5.2E-05 45.4 2.0 51 40-90 22-73 (391)
114 PHA02926 zinc finger-like prot 69.1 3.8 8.3E-05 40.5 2.7 34 39-72 170-212 (242)
115 KOG0396 Uncharacterized conser 68.5 2.6 5.6E-05 44.4 1.4 56 36-91 320-386 (389)
116 PF12861 zf-Apc11: Anaphase-pr 68.4 4.8 0.0001 33.9 2.8 54 33-86 25-84 (85)
117 KOG2177 Predicted E3 ubiquitin 68.0 2.1 4.6E-05 41.8 0.7 44 98-147 11-54 (386)
118 PF14447 Prok-RING_4: Prokaryo 67.7 2.6 5.7E-05 32.6 1.0 33 119-155 22-54 (55)
119 TIGR00570 cdk7 CDK-activating 67.7 4.8 0.0001 41.7 3.2 32 40-71 4-40 (309)
120 PF14835 zf-RING_6: zf-RING of 67.5 1.9 4.1E-05 34.4 0.2 49 101-156 8-56 (65)
121 PF14634 zf-RING_5: zinc-RING 65.6 4.5 9.8E-05 29.3 1.9 30 41-70 1-33 (44)
122 PF14835 zf-RING_6: zf-RING of 65.4 2.8 6.1E-05 33.5 0.8 52 39-92 7-59 (65)
123 PF04126 Cyclophil_like: Cyclo 65.2 51 0.0011 29.4 8.9 100 350-481 2-113 (120)
124 KOG2979 Protein involved in DN 61.8 3.9 8.5E-05 41.1 1.2 54 100-160 176-229 (262)
125 PF10915 DUF2709: Protein of u 61.4 3.4 7.4E-05 39.8 0.7 16 100-115 87-102 (238)
126 COG5432 RAD18 RING-finger-cont 60.2 5.6 0.00012 40.7 2.0 48 99-152 24-71 (391)
127 KOG0825 PHD Zn-finger protein 58.5 2.7 5.8E-05 48.1 -0.6 54 99-155 122-175 (1134)
128 PF14446 Prok-RING_1: Prokaryo 57.5 9.2 0.0002 29.5 2.3 46 100-151 5-52 (54)
129 COG5222 Uncharacterized conser 55.7 6.1 0.00013 40.5 1.4 48 101-156 275-322 (427)
130 PF02891 zf-MIZ: MIZ/SP-RING z 55.5 8.2 0.00018 29.1 1.8 46 101-149 3-50 (50)
131 KOG4159 Predicted E3 ubiquitin 51.7 7.7 0.00017 41.7 1.5 40 38-78 84-123 (398)
132 KOG0824 Predicted E3 ubiquitin 50.0 8.2 0.00018 39.7 1.3 45 102-152 9-54 (324)
133 KOG0802 E3 ubiquitin ligase [P 48.1 9.4 0.0002 42.7 1.6 45 37-81 289-338 (543)
134 COG5152 Uncharacterized conser 46.2 8.2 0.00018 37.5 0.6 44 100-149 196-239 (259)
135 COG5540 RING-finger-containing 45.2 26 0.00055 36.3 3.9 51 98-151 321-372 (374)
136 KOG0827 Predicted E3 ubiquitin 44.9 15 0.00032 39.2 2.3 72 100-184 4-78 (465)
137 KOG4628 Predicted E3 ubiquitin 44.1 15 0.00031 38.9 2.1 42 40-81 230-275 (348)
138 KOG3113 Uncharacterized conser 43.9 21 0.00045 36.0 3.0 51 39-91 111-165 (293)
139 PF13894 zf-C2H2_4: C2H2-type 43.8 12 0.00025 22.4 0.8 13 101-113 1-13 (24)
140 COG5194 APC11 Component of SCF 43.4 14 0.0003 30.8 1.4 48 38-85 19-82 (88)
141 COG5243 HRD1 HRD ubiquitin lig 42.6 30 0.00064 36.8 4.0 46 39-84 287-345 (491)
142 PF00096 zf-C2H2: Zinc finger, 41.0 13 0.00029 22.6 0.8 14 101-114 1-14 (23)
143 KOG2462 C2H2-type Zn-finger pr 39.7 25 0.00054 35.9 2.9 55 98-152 128-199 (279)
144 KOG1814 Predicted E3 ubiquitin 38.8 20 0.00043 38.5 2.1 65 84-149 160-240 (445)
145 KOG2932 E3 ubiquitin ligase in 37.1 11 0.00023 39.0 -0.2 35 119-157 106-140 (389)
146 KOG1703 Adaptor protein Enigma 35.0 25 0.00054 38.7 2.2 88 39-135 330-421 (479)
147 KOG0802 E3 ubiquitin ligase [P 34.6 21 0.00046 39.9 1.7 61 100-162 291-352 (543)
148 PF05605 zf-Di19: Drought indu 33.0 33 0.00071 25.9 2.0 36 52-110 6-41 (54)
149 KOG0883 Cyclophilin type, U bo 32.1 37 0.0008 36.3 2.8 70 101-176 41-118 (518)
150 KOG4739 Uncharacterized protei 31.9 20 0.00043 35.8 0.8 44 101-150 4-47 (233)
151 KOG2879 Predicted E3 ubiquitin 31.5 46 0.00099 34.0 3.2 42 40-81 240-284 (298)
152 KOG2660 Locus-specific chromos 30.9 16 0.00034 38.1 -0.1 43 37-79 13-56 (331)
153 PRK11088 rrmA 23S rRNA methylt 30.8 26 0.00056 35.2 1.4 25 40-64 3-30 (272)
154 COG1592 Rubrerythrin [Energy p 29.8 23 0.0005 33.6 0.8 8 100-107 134-141 (166)
155 KOG0828 Predicted E3 ubiquitin 29.6 26 0.00057 38.5 1.2 46 39-84 571-634 (636)
156 PF14353 CpXC: CpXC protein 28.4 44 0.00096 29.7 2.4 26 99-124 37-62 (128)
157 COG1645 Uncharacterized Zn-fin 27.6 46 0.001 30.3 2.3 23 75-108 30-52 (131)
158 PF12171 zf-C2H2_jaz: Zinc-fin 26.4 36 0.00079 21.8 1.1 14 100-113 1-14 (27)
159 PF12874 zf-met: Zinc-finger o 26.4 32 0.00069 21.3 0.8 13 101-113 1-13 (25)
160 KOG2593 Transcription initiati 26.0 43 0.00094 36.2 2.1 14 98-111 126-139 (436)
161 KOG0824 Predicted E3 ubiquitin 25.9 35 0.00075 35.3 1.3 46 40-85 8-54 (324)
162 PRK05452 anaerobic nitric oxid 25.1 83 0.0018 34.7 4.2 46 97-149 422-467 (479)
163 PF13465 zf-H2C2_2: Zinc-finge 25.0 36 0.00077 21.8 0.8 14 98-111 12-25 (26)
164 smart00064 FYVE Protein presen 24.0 37 0.0008 26.6 0.9 34 101-134 11-44 (68)
165 KOG4628 Predicted E3 ubiquitin 23.5 54 0.0012 34.7 2.2 61 85-148 212-275 (348)
166 PRK06266 transcription initiat 22.7 51 0.0011 31.5 1.8 35 98-153 115-149 (178)
167 KOG3161 Predicted E3 ubiquitin 22.2 28 0.00061 39.4 -0.1 34 102-135 13-46 (861)
168 KOG0804 Cytoplasmic Zn-finger 22.0 39 0.00084 36.8 0.8 67 42-127 178-251 (493)
169 KOG2169 Zn-finger transcriptio 21.4 55 0.0012 37.5 2.0 94 61-160 260-365 (636)
170 COG5175 MOT2 Transcriptional r 21.0 46 0.001 34.9 1.1 53 98-155 13-68 (480)
171 smart00531 TFIIE Transcription 20.1 77 0.0017 29.1 2.3 41 98-154 97-137 (147)
No 1
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-133 Score=1002.55 Aligned_cols=422 Identities=61% Similarity=1.007 Sum_probs=395.3
Q ss_pred CCCCCCCCCCeeEeHHhHhhhcCCccccc-cCCCCCCCCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCC
Q 010602 1 MGKKQHSKDRMFITKTEWATEWGGAKSKE-VRTPFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVT 79 (506)
Q Consensus 1 mgk~~h~~dk~y~T~~E~~~~~g~~k~~~-~~~~~~~lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvt 79 (506)
|||+||||||||||++||+..|||++... -+..|+||||+||+|++.||++|||+.+|.+||..+|++||+++|++|+|
T Consensus 1 MGKkQHqKDkmylT~tEw~~~~Ggkk~~~~n~~~FkrLP~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~t 80 (518)
T KOG0883|consen 1 MGKKQHQKDKMYLTTTEWKSIYGGKKDTGENRTQFKRLPFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPIT 80 (518)
T ss_pred CCcccccccceEEeehhhhhhcCCCCCCcccccccccCChhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCC
Confidence 99999999999999999999999998863 38899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEec
Q 010602 80 GTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 80 g~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
|++|+.+|||+|+|++|++|+|||||++|+|++++|||||+++||||||+||++||||+++|+||++|+||++.|||+||
T Consensus 81 G~kl~~~dLIkL~F~Kns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQ 160 (518)
T KOG0883|consen 81 GQKLDGKDLIKLKFHKNSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQ 160 (518)
T ss_pred CCccccccceeeeeccCCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccchhhccCcccChHHHhhccCCCcc-cc-ccchhHHHHHHHhccccccchhccCCCCchhHHHHHHHHH
Q 010602 160 NPNALDTKVTLEFDHVKKGLKVDDEELRKMESDPTY-NI-NVAGDIKQMLQELGTEKGQETALLGGGGSKAQKERAAALA 237 (506)
Q Consensus 160 dp~~~~~~~~~~f~~vk~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 237 (506)
||++++++++++|+|||+++++.++++++++.+|.+ .+ ++|-+++.+|++|.+++...
T Consensus 161 dP~~lek~~~~~F~hvk~~lk~~~eeek~~~~dpa~~~~k~~n~e~ks~l~el~k~~~p~-------------------- 220 (518)
T KOG0883|consen 161 DPNNLEKFNMSDFYHVKKNLKTADEEEKKAKKDPALGYIKAMNLETKSTLPELSKEYQPK-------------------- 220 (518)
T ss_pred CcchhhccchhhHHHHhcccccCcHHHHHhhcCchhhhhhhcchhhhhhhHHHhhhhccc--------------------
Confidence 999999999999999999999999999999999994 44 78889999999998876310
Q ss_pred HHHHHhhhhhhcccccccccccccccchhhcccccccccCccccccccCchHHHHHHHhhhhcCCCccccccccccccCC
Q 010602 238 AILAARSRIEENSKSDANGEAKATKAFSIVDAASASVHGRSASAAKTASSDKTAARIAMHMAGERTPVNAKLVKSRYTTG 317 (506)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 317 (506)
... +++ . +..+ +++++++||||
T Consensus 221 ~~~--------------------------------------a~t------~-----------~~~a---D~~naahyStG 242 (518)
T KOG0883|consen 221 KSI--------------------------------------AST------M-----------KRSA---DKINAAHYSTG 242 (518)
T ss_pred hhh--------------------------------------hhh------c-----------cccc---hhhhhhhcccc
Confidence 000 000 0 0111 35679999999
Q ss_pred ccccceeccCCCCCCccchhhhh-----hhcCCCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEE
Q 010602 318 AASRSFTSTAYDPVTTNEFEYIK-----VEKNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHR 392 (506)
Q Consensus 318 ~~~~s~tst~~~p~~~~~~~~~~-----~~~~~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~R 392 (506)
.+|+|||||+|+|+|+++++.+. +.++ ++++||+|+|+.|+|+||||||.+|++|+||+.||+.|||+|+.|||
T Consensus 243 ~vaasfTSTam~PvT~neaaiid~d~~ry~rv-Kkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHR 321 (518)
T KOG0883|consen 243 AVAASFTSTAMTPVTKNEAAIIDEDDVRYTRV-KKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHR 321 (518)
T ss_pred ceeceeccceeeecccchhhhccchhhhhccc-cccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHH
Confidence 99999999999999999998544 3444 99999999999999999999999999999999999999999999999
Q ss_pred eecCceEecCCCCCCCCCCCcccCCCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcC
Q 010602 393 SIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGG 472 (506)
Q Consensus 393 vi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G 472 (506)
.|+|||||||||+|+|.||+||||.+|.|||.+.|.|+.||+|||||+|||+|||||||++++|.|||++||||||||+|
T Consensus 322 sIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGG 401 (518)
T KOG0883|consen 322 SIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGG 401 (518)
T ss_pred HHHHHeeeCCCCCCCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 473 LTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 473 ~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
+++|.+||.+++++.++|+++|+|..+.|
T Consensus 402 ldtL~amEnve~d~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 402 LDTLTAMENVETDEKDRPKEEIKIEDAIV 430 (518)
T ss_pred HHHHHHHhcCCCCCCCCcccceEEeeeEE
Confidence 99999999999999999999999999876
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-50 Score=352.24 Aligned_cols=155 Identities=50% Similarity=0.872 Sum_probs=151.3
Q ss_pred ceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccC
Q 010602 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (506)
Q Consensus 348 ~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 427 (506)
..+|.|+|++|.|.+|||-+.||+||.||.+|++.|||+|+.|||||++||||||||+|+|+||.||||..|.||.+..|
T Consensus 9 ~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dL 88 (164)
T KOG0881|consen 9 PPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDL 88 (164)
T ss_pred CCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 428 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 428 ~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
+|.+.|+|||||+|||+|||||||||.+.+||||+||+||||..||+|+.+|..+.||..+||..+|+|..+.+.
T Consensus 89 khTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 89 KHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYPS 163 (164)
T ss_pred cccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987653
No 3
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-46 Score=378.19 Aligned_cols=153 Identities=44% Similarity=0.763 Sum_probs=143.1
Q ss_pred ceEEEEE---ecCeeeEEEEcCCCChhHHHHHHHHHhc--c---------ccCCceEEEeecCceEecCCCC-CCCCCCC
Q 010602 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--G---------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGE 412 (506)
Q Consensus 348 ~~~v~l~---T~~G~I~ieL~~d~aP~t~~NF~~L~~~--g---------~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~ 412 (506)
..|..|. -+.|||+||||.|.||+||+||+.||.+ | .|+|+.|||||++|||||||++ |+|+||+
T Consensus 10 r~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGe 89 (372)
T KOG0546|consen 10 RVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGE 89 (372)
T ss_pred eEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcc
Confidence 3444444 3669999999999999999999999954 2 3999999999999999999999 9999999
Q ss_pred cccCCCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCccc
Q 010602 413 SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLV 492 (506)
Q Consensus 413 si~g~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~ 492 (506)
||||..|.|| ++.++|+++++|||||.||||||||||||..++|||||+|+|||+||.|++|++.||.+.+|..++|..
T Consensus 90 SIYG~~FdDE-nF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~ 168 (372)
T KOG0546|consen 90 SIYGEKFDDE-NFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLA 168 (372)
T ss_pred cccccccccc-cceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCcc
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeee
Q 010602 493 SLCVKYPSF 501 (506)
Q Consensus 493 ~I~I~s~~v 501 (506)
+|+|.++..
T Consensus 169 dV~I~dCGe 177 (372)
T KOG0546|consen 169 DVVISDCGE 177 (372)
T ss_pred ceEeccccc
Confidence 999998865
No 4
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-46 Score=321.47 Aligned_cols=153 Identities=57% Similarity=1.000 Sum_probs=149.6
Q ss_pred EEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCC
Q 010602 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 429 (506)
Q Consensus 350 ~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h 429 (506)
.|+|+|..|+|.||||++.+|+||+||+.||...||++++|||.+++||+|+|||+.+|.||.||||.+|+||+...|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCC-CCcccceEEEeeeec
Q 010602 430 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLVSLCVKYPSFR 502 (506)
Q Consensus 430 ~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~-~rP~~~I~I~s~~v~ 502 (506)
+.||+|||||.|||+|+||||||++..||||-+|||||+||+|+|+|+.|+.++++++ .||+.++.|..++|-
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih 155 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999985 899999999999874
No 5
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-46 Score=380.93 Aligned_cols=154 Identities=47% Similarity=0.769 Sum_probs=150.9
Q ss_pred eEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCC
Q 010602 349 GYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLL 428 (506)
Q Consensus 349 ~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~ 428 (506)
..+.|+|++|+|.|.||++.||+||+||-..|++|||||..|||||+|||||+|||.|+|+||+||||..|+|||.+.|.
T Consensus 405 ~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lr 484 (558)
T KOG0882|consen 405 KAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLR 484 (558)
T ss_pred cceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCcccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 429 HSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 429 h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
|+++-.|||||+||||||||||||..+.|||||+|||||||+.||||+++|+++.|+.++||.++|.|.+++|.
T Consensus 485 hdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv~ 558 (558)
T KOG0882|consen 485 HDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISVK 558 (558)
T ss_pred cCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
No 6
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=6.1e-45 Score=339.06 Aligned_cols=153 Identities=69% Similarity=1.196 Sum_probs=149.0
Q ss_pred EEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCC
Q 010602 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 429 (506)
Q Consensus 350 ~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h 429 (506)
||+|+|+.|+|+||||++.||+||+||++||+.|||+|+.|||++++|||||||+.++|.++.++||.+|++|+...+.|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 430 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 430 ~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
+++|+|+||++++++++|||||+++++|+||++|+|||||++|||||++|++++++.+++|+++|+|.++.|.
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~ 153 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence 9999999999999999999999999999999999999999999999999999999888999999999999875
No 7
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.5e-45 Score=336.82 Aligned_cols=152 Identities=59% Similarity=1.045 Sum_probs=146.9
Q ss_pred EEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCC
Q 010602 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 429 (506)
Q Consensus 350 ~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h 429 (506)
.|+|+|+.|+|+||||++.||+||+||+.||++|||+|+.|||++++||||||||.++|.++.++||.+|++|+...+.|
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999998778899
Q ss_pred CCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 430 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 430 ~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
+++|+|+||+.++++++|||||+++++|+||++|+|||||++|||||++|++++++++++|..+|+|.++++
T Consensus 82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 999999999999999999999999999999999999999999999999999999998999999999998864
No 8
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-45 Score=340.40 Aligned_cols=145 Identities=48% Similarity=0.788 Sum_probs=138.7
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhc---cc-cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccccccCCC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCER---GY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLH 429 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~---g~-Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h 429 (506)
-..|+|+|+||+..+|+||+||++||.. || |.|++||||||||||||||++ |+|.||.||||..|+|| ++.|+|
T Consensus 51 ~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DE-Nf~LkH 129 (217)
T KOG0880|consen 51 EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDE-NFKLKH 129 (217)
T ss_pred EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCc-cceeec
Confidence 3568999999999999999999999973 34 999999999999999999999 78999999999999999 899999
Q ss_pred CCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeee
Q 010602 430 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPS 500 (506)
Q Consensus 430 ~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~ 500 (506)
+++|.|||||.|||+||||||||+...+||||+|+|||+|++|||+|.+|+.++||..++|+++++|.++.
T Consensus 130 ~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g 200 (217)
T KOG0880|consen 130 DRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCG 200 (217)
T ss_pred CCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998864
No 9
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.3e-44 Score=333.08 Aligned_cols=147 Identities=50% Similarity=0.848 Sum_probs=142.9
Q ss_pred EEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCCCc
Q 010602 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGR 432 (506)
Q Consensus 353 l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~ 432 (506)
|+|+.|+|+||||++.||+||+||+.||+.|||+|+.|||++++|||||||+.++|.++.++|+..|++|+.+.+.|+++
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~~ 81 (148)
T cd01927 2 IHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDRP 81 (148)
T ss_pred eEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred cEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEee
Q 010602 433 GVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYP 499 (506)
Q Consensus 433 G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~ 499 (506)
|+|+||+.++++++|||||++.++|+||++|+|||||++|||||++|++++++.+++|.++|+|.++
T Consensus 82 G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 82 YTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred eEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 9999999999999999999999999999999999999999999999999999988999999999874
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=333.89 Aligned_cols=148 Identities=45% Similarity=0.737 Sum_probs=136.6
Q ss_pred EEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCC-CCCCCcccCCCCcccccccCCC
Q 010602 351 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGT-GRGGESIWGKPFKDEVNSKLLH 429 (506)
Q Consensus 351 v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~-g~gg~si~g~~~~dE~~~~l~h 429 (506)
|.++|+.|+|+||||++.||+||+||++||+.|||+|+.|||||++||||||||+++ |.+|+ +.+|++|+ ....|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~-~~~~~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDEN-FALNG 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccc-ccccc
Confidence 679999999999999999999999999999999999999999999999999999977 88888 58999994 45555
Q ss_pred CC--ccEEEEecCC-CCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCC----CCcccceEEEeeeec
Q 010602 430 SG--RGVVSMANSG-PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN----DRPLVSLCVKYPSFR 502 (506)
Q Consensus 430 ~~--~G~lsman~g-~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~----~rP~~~I~I~s~~v~ 502 (506)
+. ||+|||||++ ||+|+|||||++.+.||||++|+|||+|++|||||++|+++.++.. +.|..+++|.++.+.
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 56 9999999999 9999999999999999999999999999999999999999988853 567789999987764
No 11
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=8.9e-44 Score=326.80 Aligned_cols=145 Identities=51% Similarity=0.937 Sum_probs=140.7
Q ss_pred EEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCCCc
Q 010602 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGR 432 (506)
Q Consensus 353 l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~ 432 (506)
|+|+.|+|+||||++.||+||+||++||+.|||+++.|||++++|||||||+.++|.++.++||.+|++|+...++|+++
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~~ 81 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTGA 81 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred cEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEe
Q 010602 433 GVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKY 498 (506)
Q Consensus 433 G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s 498 (506)
|+||||+.++++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.++|+|..
T Consensus 82 G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 82 GILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred eEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 99999999999999999999999999999999999999999999999999998 899999999963
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=6.7e-43 Score=327.49 Aligned_cols=151 Identities=44% Similarity=0.718 Sum_probs=143.0
Q ss_pred EEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccC-------CCCcccccc
Q 010602 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWG-------KPFKDEVNS 425 (506)
Q Consensus 353 l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g-------~~~~dE~~~ 425 (506)
|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+.+++.++.++|+ ..|.+|+.+
T Consensus 2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~~ 81 (166)
T cd01921 2 LETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEILP 81 (166)
T ss_pred cEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccCC
Confidence 7899999999999999999999999999999999999999999999999999999999988875 367888778
Q ss_pred cCCCCCccEEEEecCCCCCCCceEEEEeCC-CCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeecc
Q 010602 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKS-ATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFRN 503 (506)
Q Consensus 426 ~l~h~~~G~lsman~g~~t~~SqFfItl~~-~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~~ 503 (506)
.++|+++|+|+||+.++++++|||||++.+ +|+||++|+|||||++|||||++|++++++.+++|.++|+|.++.|-.
T Consensus 82 ~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 82 LLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred ccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 899999999999999999999999999975 899999999999999999999999999999899999999999998754
No 13
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.1e-42 Score=325.63 Aligned_cols=158 Identities=48% Similarity=0.860 Sum_probs=151.3
Q ss_pred CCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccccc
Q 010602 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN 424 (506)
Q Consensus 345 ~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 424 (506)
|+.++.|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.|||++++|||||||+.++|.++.++||.+|++|..
T Consensus 2 ~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~ 81 (171)
T cd01925 2 PPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFH 81 (171)
T ss_pred CCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEc-CHHHHHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG-GLTTLAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 425 ~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~-G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
..+.|+++|+|+||+.++++++|||||+++++|+||++|+|||+|++ ||++|++|++++++.+++|..+|+|.++.|-
T Consensus 82 ~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~ 160 (171)
T cd01925 82 SRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVL 160 (171)
T ss_pred cCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEE
Confidence 78899999999999999999999999999999999999999999994 6889999999999988999999999999874
No 14
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-42 Score=302.44 Aligned_cols=144 Identities=45% Similarity=0.788 Sum_probs=139.2
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhccc--------cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccccc
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNS 425 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~--------Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~ 425 (506)
+..|+|.||||.|.+|+|++||++.|.+.| |+++.|||||++|||||||+. |+|+|..||||.+|+|| ++
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DE-NF 100 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDE-NF 100 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCc-ce
Confidence 578999999999999999999999998876 999999999999999999987 88999999999999999 89
Q ss_pred cCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEee
Q 010602 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYP 499 (506)
Q Consensus 426 ~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~ 499 (506)
.++|+++|+|||||+|+++||.|||||...|.|||++|+|||||++||.++++||.+++..+++|+-+|.|.-+
T Consensus 101 tlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qC 174 (177)
T KOG0879|consen 101 TLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQC 174 (177)
T ss_pred eeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999754
No 15
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.2e-39 Score=304.89 Aligned_cols=149 Identities=34% Similarity=0.588 Sum_probs=132.2
Q ss_pred EEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCC
Q 010602 351 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 351 v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|.|+|+.|+|+|+||++.||+||+||+.||+.|||+++.||||+++|||||||+.. +.+ ...++.+|++|....+.|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~-~~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP-GMK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCC-CCC-cCCCCCCcCCcccccccC-
Confidence 68999999999999999999999999999999999999999999999999999752 221 234577899997665655
Q ss_pred CccEEEEecCC-CCCCCceEEEEeCCCCCCC-------C-CCcEEEEEEcCHHHHHHhhcCCCCC----CCCcccceEEE
Q 010602 431 GRGVVSMANSG-PHTNGSQFFILYKSATHLN-------Y-KHTVFGGVVGGLTTLAAMEKVPVDE----NDRPLVSLCVK 497 (506)
Q Consensus 431 ~~G~lsman~g-~~t~~SqFfItl~~~~~LD-------g-k~tVFGrVv~G~dvL~~I~~~~t~~----~~rP~~~I~I~ 497 (506)
.+|+||||+.+ |++++|||||++.++++|| + +|+|||+|++|||||++|++++++. +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 79999999985 9999999999999988876 3 7999999999999999999999986 36999999999
Q ss_pred eeeec
Q 010602 498 YPSFR 502 (506)
Q Consensus 498 s~~v~ 502 (506)
+++|.
T Consensus 159 ~~~i~ 163 (164)
T PRK10791 159 SVTVS 163 (164)
T ss_pred EEEEe
Confidence 99875
No 16
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.9e-39 Score=310.09 Aligned_cols=154 Identities=31% Similarity=0.523 Sum_probs=136.7
Q ss_pred CcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccc
Q 010602 346 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNS 425 (506)
Q Consensus 346 k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 425 (506)
+.+..|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.|||++++|||||||+.+... ...++.+|.+|...
T Consensus 26 ~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~--~~~~~~~~~~e~~~ 103 (190)
T PRK10903 26 KGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADN 103 (190)
T ss_pred CCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCC--CCCCCCcccCcccc
Confidence 3455689999999999999999999999999999999999999999999999999999875432 23457789999644
Q ss_pred cCCCCCccEEEEecCC-CCCCCceEEEEeCCCCCCCC-----CCcEEEEEEcCHHHHHHhhcCCCCC----CCCcccceE
Q 010602 426 KLLHSGRGVVSMANSG-PHTNGSQFFILYKSATHLNY-----KHTVFGGVVGGLTTLAAMEKVPVDE----NDRPLVSLC 495 (506)
Q Consensus 426 ~l~h~~~G~lsman~g-~~t~~SqFfItl~~~~~LDg-----k~tVFGrVv~G~dvL~~I~~~~t~~----~~rP~~~I~ 495 (506)
.+ |+.+|+||||+.+ +++|+|||||+++++++||+ +|+|||+|++|||||++|++++++. .++|..+|.
T Consensus 104 ~l-~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~ 182 (190)
T PRK10903 104 GL-RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV 182 (190)
T ss_pred cC-cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeE
Confidence 44 5689999999965 99999999999999999984 8999999999999999999999976 579999999
Q ss_pred EEeeeec
Q 010602 496 VKYPSFR 502 (506)
Q Consensus 496 I~s~~v~ 502 (506)
|.++.|.
T Consensus 183 I~~~~v~ 189 (190)
T PRK10903 183 ILSAKVL 189 (190)
T ss_pred EEEEEEe
Confidence 9998763
No 17
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2e-39 Score=303.47 Aligned_cols=149 Identities=46% Similarity=0.790 Sum_probs=138.9
Q ss_pred eEEEEE---ecCeeeEEEEcCCCChhHHHHHHHHHhc--c------ccCCceEEEeecCceEecCCCC-CCCCCCCcccC
Q 010602 349 GYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--G------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWG 416 (506)
Q Consensus 349 ~~v~l~---T~~G~I~ieL~~d~aP~t~~NF~~L~~~--g------~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g 416 (506)
.|+.|. ++.|+|+||||++.||+||+||++||++ | ||+++.|||++++|||||||+. +++.++.++||
T Consensus 3 v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g 82 (164)
T cd01926 3 VFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYG 82 (164)
T ss_pred EEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccC
Confidence 355565 4799999999999999999999999973 5 8999999999999999999986 77889999999
Q ss_pred CCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEE
Q 010602 417 KPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCV 496 (506)
Q Consensus 417 ~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I 496 (506)
.+|++| ...+.|+++|+||||+.++++++|||||++.++|+||++|+|||||++|||||++|++++++ +++|+.+|+|
T Consensus 83 ~~~~~e-~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I 160 (164)
T cd01926 83 EKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVI 160 (164)
T ss_pred CccCCC-CccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEE
Confidence 999999 57789999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred Eee
Q 010602 497 KYP 499 (506)
Q Consensus 497 ~s~ 499 (506)
..+
T Consensus 161 ~~c 163 (164)
T cd01926 161 ADC 163 (164)
T ss_pred EEC
Confidence 875
No 18
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-40 Score=331.69 Aligned_cols=160 Identities=46% Similarity=0.838 Sum_probs=154.7
Q ss_pred CCCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccc
Q 010602 344 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEV 423 (506)
Q Consensus 344 ~~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~ 423 (506)
.|..+|.|.|.|+.|+|.||||+..||++|.||++||-.|||+|+.|||++|+|++|||||+|+|+||+||||.+|.+|+
T Consensus 8 EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~ 87 (439)
T KOG0885|consen 8 EPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEF 87 (439)
T ss_pred CCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEc-CHHHHHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 424 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG-GLTTLAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 424 ~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~-G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
+++|.+++||+|+|||.+.+.|||||||||+++|+|+++|||||+|++ .+..+-+|..+.++.++||..+-+|.++.|.
T Consensus 88 h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 88 HPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL 167 (439)
T ss_pred CcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence 999999999999999999999999999999999999999999999996 5778899999999999999999999999886
Q ss_pred c
Q 010602 503 N 503 (506)
Q Consensus 503 ~ 503 (506)
.
T Consensus 168 ~ 168 (439)
T KOG0885|consen 168 I 168 (439)
T ss_pred c
Confidence 4
No 19
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=3.4e-39 Score=307.46 Aligned_cols=145 Identities=44% Similarity=0.776 Sum_probs=136.4
Q ss_pred cCeeeEEEEcCCCChhHHHHHHHHHhccc--------cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCccccccc
Q 010602 356 THGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSK 426 (506)
Q Consensus 356 ~~G~I~ieL~~d~aP~t~~NF~~L~~~g~--------Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~ 426 (506)
+.|+|+||||.+.||+||+||++||+++| |+++.||||+++|||||||+. ++|.|+.++||..|++| ...
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e-~~~ 109 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDE-NFI 109 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCc-ccc
Confidence 57999999999999999999999997654 999999999999999999975 78889999999999998 467
Q ss_pred CCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEE-cCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVV-GGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 427 l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv-~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
+.|+++|+||||+.++++++||||||+.++|+||++|+|||+|+ +||+||++|++++++..++|..+|+|..+.+
T Consensus 110 ~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~ 185 (186)
T PLN03149 110 AKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGE 185 (186)
T ss_pred cccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEe
Confidence 88999999999999999999999999999999999999999999 7999999999999998999999999998764
No 20
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=7e-39 Score=315.68 Aligned_cols=151 Identities=32% Similarity=0.484 Sum_probs=136.2
Q ss_pred ceEEEEEec-----CeeeEEEEcCCCChhHHHHHHHHHhcc-----------ccCCceEEEeecC-ceEecCCCCCCCCC
Q 010602 348 KGYVQLHTT-----HGDLNIELHCDITPRSCENFITLCERG-----------YYNGVAFHRSIRN-FMIQGGDPTGTGRG 410 (506)
Q Consensus 348 ~~~v~l~T~-----~G~I~ieL~~d~aP~t~~NF~~L~~~g-----------~Y~g~~f~Rvi~~-f~iQgGd~~~~g~g 410 (506)
...|.|.++ .|+|+||||.+.||+||+||+.||++. +|+|+.||||+++ ||||+||+.+ +
T Consensus 52 ~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---~ 128 (249)
T PTZ00221 52 SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---F 128 (249)
T ss_pred CCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---C
Confidence 344666655 578999999999999999999999743 3999999999986 8999999874 3
Q ss_pred CCcccCCCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCc
Q 010602 411 GESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRP 490 (506)
Q Consensus 411 g~si~g~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP 490 (506)
+.++||.+|+|| .+.+.|+.+|+|||||.|+++||||||||+.++|+||++|+|||+|++||+||++|++++++..++|
T Consensus 129 g~s~~G~~f~dE-~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP 207 (249)
T PTZ00221 129 NVSSTGTPIADE-GYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRP 207 (249)
T ss_pred CccCCCCcccCc-cccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence 457889999999 5688999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ccceEEEeeeec
Q 010602 491 LVSLCVKYPSFR 502 (506)
Q Consensus 491 ~~~I~I~s~~v~ 502 (506)
..+|+|.++.+-
T Consensus 208 ~~~V~I~~Cgvl 219 (249)
T PTZ00221 208 LLPVTVSFCGAL 219 (249)
T ss_pred CCCeEEEECeEe
Confidence 999999998763
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=4.2e-39 Score=298.67 Aligned_cols=144 Identities=34% Similarity=0.559 Sum_probs=128.7
Q ss_pred EEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCCCc
Q 010602 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGR 432 (506)
Q Consensus 353 l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~ 432 (506)
|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+...+.+ ..++.++.+|.... .|+.+
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~-~~~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNG-LSNTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCccccc-ccCCc
Confidence 7899999999999999999999999999999999999999999999999998865433 33567888885443 45689
Q ss_pred cEEEEecCC-CCCCCceEEEEeCCCCCCCC-----CCcEEEEEEcCHHHHHHhhcCCCCCC----CCcccceEEEee
Q 010602 433 GVVSMANSG-PHTNGSQFFILYKSATHLNY-----KHTVFGGVVGGLTTLAAMEKVPVDEN----DRPLVSLCVKYP 499 (506)
Q Consensus 433 G~lsman~g-~~t~~SqFfItl~~~~~LDg-----k~tVFGrVv~G~dvL~~I~~~~t~~~----~rP~~~I~I~s~ 499 (506)
|+||||+.+ +++++|||||+++++++||+ +|+|||+|++|||||++|++++++.. ++|..+|+|.++
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 999999975 89999999999999999995 79999999999999999999999864 699999999864
No 22
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=3.6e-38 Score=299.84 Aligned_cols=145 Identities=46% Similarity=0.718 Sum_probs=136.4
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHh---------ccccCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCccccc
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCE---------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVN 424 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~---------~g~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~ 424 (506)
++.|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|+|||||+. ++|.++.++||..+++| .
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e-~ 105 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDE-N 105 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCc-c
Confidence 467999999999999999999999996 569999999999999999999987 67889999999999999 6
Q ss_pred ccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 425 ~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
..+.|+.+|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+++++. .++|.++|.|.++.+
T Consensus 106 ~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~~v~I~~cg~ 181 (183)
T PTZ00060 106 FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGE 181 (183)
T ss_pred ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcCCeEEEEeEE
Confidence 7789999999999999999999999999999999999999999999999999999999885 689999999999865
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.5e-37 Score=284.31 Aligned_cols=145 Identities=50% Similarity=0.808 Sum_probs=136.1
Q ss_pred EEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCCCc
Q 010602 353 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGR 432 (506)
Q Consensus 353 l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~ 432 (506)
|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++++|+|||||+.+.+.++ +.++..+++|......|+++
T Consensus 2 ~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~~ 80 (146)
T cd00317 2 LDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHRR 80 (146)
T ss_pred eEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCCC
Confidence 78999999999999999999999999999999999999999999999999998765543 56788999998777778899
Q ss_pred cEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEe
Q 010602 433 GVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKY 498 (506)
Q Consensus 433 G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s 498 (506)
|+|+|++.++++++|||||++.++++||++|+|||+|++||+||++|+.++++++++|..+|+|..
T Consensus 81 G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 81 GTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999963
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-38 Score=298.93 Aligned_cols=142 Identities=45% Similarity=0.741 Sum_probs=136.4
Q ss_pred cCeeeEEEEcCCCChhHHHHHHHHH--hccc-cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccccccCCCCC
Q 010602 356 THGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHSG 431 (506)
Q Consensus 356 ~~G~I~ieL~~d~aP~t~~NF~~L~--~~g~-Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~~ 431 (506)
..|+|+++|..|..|+|++||+.|| +.|| |+|++||||||.||+||||++ ++|+||.||||..|.|| ++.|+|..
T Consensus 149 ~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdde-nf~lkht~ 227 (298)
T KOG0111|consen 149 RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDE-NFTLKHTM 227 (298)
T ss_pred ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccccccc-ceeeecCC
Confidence 5699999999999999999999999 4677 999999999999999999999 88999999999999999 89999999
Q ss_pred ccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEee
Q 010602 432 RGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYP 499 (506)
Q Consensus 432 ~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~ 499 (506)
+|+|||||+|+|+|||||||+.....|||++|+|||.|++||+||++|++..+. +++|.+.|+|..+
T Consensus 228 pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv~i~~c 294 (298)
T KOG0111|consen 228 PGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKVKIVEC 294 (298)
T ss_pred CceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEEEEEec
Confidence 999999999999999999999999999999999999999999999999999886 7999999999865
No 25
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-37 Score=305.66 Aligned_cols=154 Identities=45% Similarity=0.716 Sum_probs=148.3
Q ss_pred EEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccC-------CCCccc
Q 010602 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWG-------KPFKDE 422 (506)
Q Consensus 350 ~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g-------~~~~dE 422 (506)
.|.|+|++|+|+|.||-+.+|.+|.||++||+..||+.|.||-|..+|.+|.|||+|+|.||+|||| ..|+.|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 5899999999999999999999999999999999999999999999999999999999999999996 468999
Q ss_pred ccccCCCCCccEEEEecCCCCCCCceEEEEeCC-CCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 423 VNSKLLHSGRGVVSMANSGPHTNGSQFFILYKS-ATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 423 ~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~-~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
+.+.++|...|+|||++.|.|.+||||||||++ ...|||+|+|||+|++|||+|.+|+..-+|.+++|.++|+|.++.|
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii 161 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII 161 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence 999999999999999999999999999999995 5799999999999999999999999999999999999999999988
Q ss_pred cc
Q 010602 502 RN 503 (506)
Q Consensus 502 ~~ 503 (506)
.+
T Consensus 162 Ld 163 (479)
T KOG0415|consen 162 LD 163 (479)
T ss_pred ec
Confidence 65
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=7.7e-36 Score=275.48 Aligned_cols=150 Identities=49% Similarity=0.837 Sum_probs=134.5
Q ss_pred EEEEEec-CeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCC--CcccCCCCccccccc
Q 010602 350 YVQLHTT-HGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGG--ESIWGKPFKDEVNSK 426 (506)
Q Consensus 350 ~v~l~T~-~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg--~si~g~~~~dE~~~~ 426 (506)
||.|+|+ .|+|+||||++.||++|+||++||+.|+|+|+.|||++++++||+|++.+.+..+ ....+.++++|....
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~ 80 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPS 80 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTT
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccc
Confidence 6899997 9999999999999999999999999999999999999999999999988655421 133456799997544
Q ss_pred CCCCCccEEEEecCC--CCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 427 LLHSGRGVVSMANSG--PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 427 l~h~~~G~lsman~g--~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
..++++|+|+|++.+ +++++|||||++.++++||++|+|||+|++||+||++|++++++. +|.++|+|.++.|
T Consensus 81 ~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 81 LLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred cccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 444499999999986 888999999999999999999999999999999999999999985 9999999999876
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=4.3e-36 Score=283.82 Aligned_cols=129 Identities=34% Similarity=0.616 Sum_probs=114.6
Q ss_pred EecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCC---------------------CC
Q 010602 354 HTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRG---------------------GE 412 (506)
Q Consensus 354 ~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~g---------------------g~ 412 (506)
.|+.|+|+||||++.||+||+||+.||+.|||+++.||||+++||||||||.+++.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 489999999999999999999999999999999999999999999999999866432 34
Q ss_pred cccCCCCc----ccccccCCCCCccEEEEecCC--CCCCCceEEEEeC-------CCCCCCCCCcEEEEEEcCHHHHHHh
Q 010602 413 SIWGKPFK----DEVNSKLLHSGRGVVSMANSG--PHTNGSQFFILYK-------SATHLNYKHTVFGGVVGGLTTLAAM 479 (506)
Q Consensus 413 si~g~~~~----dE~~~~l~h~~~G~lsman~g--~~t~~SqFfItl~-------~~~~LDgk~tVFGrVv~G~dvL~~I 479 (506)
++|+..+. ++....+.|+++|+||||+.+ +|+++|||||+++ ++|+||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 56666553 333567788899999999987 7999999999998 8999999999999999999999999
Q ss_pred hcC
Q 010602 480 EKV 482 (506)
Q Consensus 480 ~~~ 482 (506)
+..
T Consensus 163 ~~g 165 (176)
T cd01924 163 KVG 165 (176)
T ss_pred cCC
Confidence 754
No 28
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=276.75 Aligned_cols=156 Identities=31% Similarity=0.549 Sum_probs=139.6
Q ss_pred CCCCCCCCeeEeHHhHhhh-----cCCccccccCCCCCCCCCccccCCCCCCCCceecCCCceeehhhHHHHHH------
Q 010602 3 KKQHSKDRMFITKTEWATE-----WGGAKSKEVRTPFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIR------ 71 (506)
Q Consensus 3 k~~h~~dk~y~T~~E~~~~-----~g~~k~~~~~~~~~~lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~------ 71 (506)
++++.++-.|+||+|.++. ||+..+|+++++++ ||+||+|||||+++||||++|||||+++|++||+
T Consensus 4 H~kN~ta~avyTY~EkkkdaaasGYGTq~~RLgrDsiK--~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaqKke~ 81 (303)
T KOG3039|consen 4 HGKNCTAGAVYTYHEKKKDAAASGYGTQRERLGRDSIK--PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQKKEI 81 (303)
T ss_pred cccCCccceeEeehhhcchhhhcCcchhhhhhcccccC--CcceeeeecccccCCccCCCCeeeeHHHHHHHHHHHHHHH
Confidence 3455689999999999983 99999999999986 8999999999999999999999999999999885
Q ss_pred --------------------------------------------------------------------------------
Q 010602 72 -------------------------------------------------------------------------------- 71 (506)
Q Consensus 72 -------------------------------------------------------------------------------- 71 (506)
T Consensus 82 arrlkayekqrr~eed~e~qra~~q~~~~~~eF~~~e~~~~s~al~r~~~~~~ae~~a~~~~~~~~~~sn~~~d~~k~lp 161 (303)
T KOG3039|consen 82 ARRLKAYEKQRRAEEDKEEQRAMSQKARRLDEFDQQESTPESSALPRNPDTNSAEDAASFHGANSVSTSNMEEDKLKTLP 161 (303)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHhhccccccccccCCCCcchhhhccCccccCCccccCcccccccccc
Confidence
Q ss_pred --------------------hcCCCCCCCCCCCCCCcccccccccCC-----------ceeecccccccccCceEEEEEe
Q 010602 72 --------------------KYGKHPVTGTPLKLEDLIPLTFHKNAE-----------GEYHCPVLNKVFTEFTHIVAVK 120 (506)
Q Consensus 72 --------------------~~~~~Pvtg~~l~~kdLi~l~f~kn~~-----------~~~~CPvt~k~f~~~t~iv~ik 120 (506)
.+-.||+.|+||++|||++++|+.... ..|+||||+.+++|.+.+++++
T Consensus 162 sFWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr 241 (303)
T KOG3039|consen 162 SFWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLR 241 (303)
T ss_pred ceecCccCchhhhhcccCCCceeeccCCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEec
Confidence 000289999999999999999998653 4699999999999999999999
Q ss_pred cCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecCCC
Q 010602 121 TTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPN 162 (506)
Q Consensus 121 ~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqdp~ 162 (506)
+||+||+++|+++|.. +.+.|||||+|++++|||.||-..
T Consensus 242 ~sg~Vv~~ecvEklir--~D~v~pv~d~plkdrdiI~LqrGG 281 (303)
T KOG3039|consen 242 PSGHVVTKECVEKLIR--KDMVDPVTDKPLKDRDIIGLQRGG 281 (303)
T ss_pred cCCcEeeHHHHHHhcc--ccccccCCCCcCcccceEeeeccc
Confidence 9999999999999964 445669999999999999999653
No 29
>PF04641 Rtf2: Rtf2 RING-finger
Probab=99.98 E-value=8.1e-33 Score=276.79 Aligned_cols=145 Identities=30% Similarity=0.495 Sum_probs=122.9
Q ss_pred CCCCCCCCCccccCCCCCCCCcee-cCCCceeehhhHHHHHHhcCC---CC-CCCCCCCCCCcccccccccC--------
Q 010602 31 RTPFKRLPFYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYGK---HP-VTGTPLKLEDLIPLTFHKNA-------- 97 (506)
Q Consensus 31 ~~~~~~lpf~~C~LSl~p~~dPV~-t~~G~lf~k~~I~~~L~~~~~---~P-vtg~~l~~kdLi~l~f~kn~-------- 97 (506)
....+..+|.+|+||++||+.||| +..|+|||+++|++||+.++. .| ...|+.+++||++|+|++|+
T Consensus 26 ~~~~~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~ 105 (260)
T PF04641_consen 26 KEEEREARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKS 105 (260)
T ss_pred HhHHhhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEecCcccccccc
Confidence 456677899999999999999985 699999999999999998854 34 34688899999999999984
Q ss_pred -----CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecCCCCccccccccc
Q 010602 98 -----EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLEF 172 (506)
Q Consensus 98 -----~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqdp~~~~~~~~~~f 172 (506)
.+.|+||||+++|+++++|||||+||||||++||+++. +.+.||+||+||++.|||+||+|.+........+
T Consensus 106 ~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 106 SGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred ccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 67899999999999999999999999999999999994 3344599999999999999999988333333445
Q ss_pred hhhccC
Q 010602 173 DHVKKG 178 (506)
Q Consensus 173 ~~vk~~ 178 (506)
.+.+..
T Consensus 183 ~~~~~~ 188 (260)
T PF04641_consen 183 EERKAK 188 (260)
T ss_pred HHHHhh
Confidence 455443
No 30
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.6e-31 Score=244.10 Aligned_cols=144 Identities=44% Similarity=0.745 Sum_probs=132.8
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhc--cc-cCCceEEE---eecCceEecCCCC-CCCCCCCcccCCCCcccccccC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCER--GY-YNGVAFHR---SIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKL 427 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~--g~-Y~g~~f~R---vi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l 427 (506)
.+.|++.++||.|..|+|++||..||.+ |+ |.++.||| .+++||+||||.+ ++|+||.|||+..|+|| ++.+
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~De-nFil 93 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDE-NFIL 93 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCc-CcEE
Confidence 5789999999999999999999999963 33 99999999 3447999999998 78999999999999999 8999
Q ss_pred CCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeee
Q 010602 428 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPS 500 (506)
Q Consensus 428 ~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~ 500 (506)
+|..+|+|||||.|||+|+|||||+.....|||++|+|||+|.+||+++++|+..... +++|..+|.|..+.
T Consensus 94 khtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~-~gk~~~~i~i~dcg 165 (167)
T KOG0865|consen 94 KHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSR-NGKTSKKITIADCG 165 (167)
T ss_pred ecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCc-CCcccccEEEecCC
Confidence 9999999999999999999999999998899999999999999999999999997765 78999999997653
No 31
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=1.5e-22 Score=195.11 Aligned_cols=119 Identities=22% Similarity=0.432 Sum_probs=109.1
Q ss_pred CCccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCC-CCCCCCCCcccccccccC-----C---------cee
Q 010602 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVT-GTPLKLEDLIPLTFHKNA-----E---------GEY 101 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvt-g~~l~~kdLi~l~f~kn~-----~---------~~~ 101 (506)
-|.+|+||++|+..||+. ..|.||++++|+++|+....-|-+ .|+.++||++.|+.+.|+ . ..|
T Consensus 33 qw~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks~~pksaShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a~f 112 (293)
T KOG3113|consen 33 QWRNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKSSLPKSASHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRARF 112 (293)
T ss_pred HHhhcccccCccccceeeehhhccccHHHHHHHHHhcccCCcchhhhcchhhHhheecccCcccccccCcccccccccee
Confidence 499999999999999875 899999999999999987656655 799999999999999984 2 259
Q ss_pred ecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecC
Q 010602 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 102 ~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqd 160 (506)
+|||++-+||+.++|++||.|||||++.|++|+ +..+| ++|+.+|.++|+|+|+.
T Consensus 113 iCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C--~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 113 ICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVC--HVCGAAYQEDDVIVLNG 167 (293)
T ss_pred ecccccceecceEEEEEEeccceeccHHHHHHh--hhccc--cccCCcccccCeEeeCC
Confidence 999999999999999999999999999999996 68899 99999999999999984
No 32
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.24 E-value=4.8e-12 Score=99.29 Aligned_cols=62 Identities=35% Similarity=0.636 Sum_probs=57.4
Q ss_pred ccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCcee
Q 010602 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~ 101 (506)
..|+||+++|++||+++.||+|++++|.+|+.++++||++|++++.+||+++...++..++|
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999998888765544
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.20 E-value=2.2e-12 Score=105.12 Aligned_cols=65 Identities=31% Similarity=0.471 Sum_probs=54.1
Q ss_pred CCCccccCCCCCCCCceecCCCceeehhhHHHHHHh-cCCCCCCCCCCCCCCcccccccccCCcee
Q 010602 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (506)
Q Consensus 37 lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~-~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~ 101 (506)
++.++|+||+..|.|||++++|++||+.+|..||.+ +++||+|+++++..+|+++.-.++...+|
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~ 67 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW 67 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence 457899999999999999999999999999999999 78999999999999999998888766555
No 34
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.33 E-value=2.1e-07 Score=97.04 Aligned_cols=54 Identities=37% Similarity=0.669 Sum_probs=51.5
Q ss_pred cccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCccccccc
Q 010602 41 CCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFH 94 (506)
Q Consensus 41 ~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~ 94 (506)
.|+||.+..++||++ .+|++|||+.|.+||.++|+||+|++||++.|||+++--
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecccc
Confidence 699999999999999 789999999999999999999999999999999999753
No 35
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.26 E-value=9.1e-07 Score=69.16 Aligned_cols=54 Identities=26% Similarity=0.472 Sum_probs=45.3
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEec
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
+|+||||++.|.+- ++.+|||||+.+||.++..+.. .||+|+++++.+|+|.+.
T Consensus 1 ~~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~--~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 1 EFLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHG--TDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred CcCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCC--CCCCCcCCCChhhceeCH
Confidence 48999999999873 3468999999999999965533 459999999999999853
No 36
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.26 E-value=3.4e-07 Score=71.11 Aligned_cols=41 Identities=41% Similarity=0.771 Sum_probs=29.6
Q ss_pred ccccCCCCCCCCceec-CCCceeehhhHHHHHHhc--CCCCCCC
Q 010602 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKY--GKHPVTG 80 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~--~~~Pvtg 80 (506)
..||||+++|++||.+ .-||+|++++|++||..+ ..||++|
T Consensus 12 ~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 12 LKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred cCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 4699999999999998 669999999999999432 3577765
No 37
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.9e-06 Score=83.31 Aligned_cols=55 Identities=31% Similarity=0.550 Sum_probs=49.5
Q ss_pred CCccccCCCCCCCCcee-cCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 010602 38 PFYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~-t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~ 92 (506)
.=..||+|++--.+|.+ +.+|++||..+|..|+.+++.|||||.|++..+|+++-
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 35569999999999955 58899999999999999999999999999999998763
No 38
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2e-05 Score=82.94 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=132.3
Q ss_pred hhcCCCcceEEEEEecCe----eeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCC--CCCCCCCcc
Q 010602 341 VEKNPKKKGYVQLHTTHG----DLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPT--GTGRGGESI 414 (506)
Q Consensus 341 ~~~~~k~~~~v~l~T~~G----~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~--~~g~gg~si 414 (506)
.-+.+-..+.+.+.|..| -|.|+|+.+-.|.-++-|..+|..+|+++..|.||...+++|.||.. .+..|-...
T Consensus 91 miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 91 MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY 170 (558)
T ss_pred hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEe
Confidence 334445667888999999 89999999999999999999999999999999999999999999865 333333334
Q ss_pred cCCC----C-cccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCC
Q 010602 415 WGKP----F-KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDR 489 (506)
Q Consensus 415 ~g~~----~-~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~r 489 (506)
|... | +++.+..++|. .-++..........+-+|+++-...+-|..+..|||++..|-++++.|+...++....
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q 249 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQ 249 (558)
T ss_pred ecCCCcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhc
Confidence 4322 3 33456778885 5677777665555688999999999999999999999999999999999999999899
Q ss_pred cccceEEEeeeec
Q 010602 490 PLVSLCVKYPSFR 502 (506)
Q Consensus 490 P~~~I~I~s~~v~ 502 (506)
|..++.|.++.+.
T Consensus 250 ~ks~y~l~~Velg 262 (558)
T KOG0882|consen 250 PKSPYGLMHVELG 262 (558)
T ss_pred cccccccceeehh
Confidence 9999999988764
No 39
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.4e-05 Score=72.35 Aligned_cols=58 Identities=26% Similarity=0.439 Sum_probs=48.9
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEec
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
++-|-||||...+..... +--.||||||..||+++......| |+|+++++.++++.|.
T Consensus 129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~C--P~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKC--PTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCC--CCcccccchhhheecc
Confidence 456999999999876544 336799999999999998777778 9999999999998763
No 40
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4.6e-05 Score=74.35 Aligned_cols=54 Identities=22% Similarity=0.504 Sum_probs=41.0
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHhcC---CCCCCCCCCCCCCcccc
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG---KHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~---~~Pvtg~~l~~kdLi~l 91 (506)
-++-|.|||...+|||+|..|||||+.+|-+||.-+. .|||-.-.++.+.||||
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 4888999999999999999999999999999998542 23444444444444444
No 41
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=4.2e-05 Score=76.72 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=49.2
Q ss_pred CCCCCCCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 010602 32 TPFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 32 ~~~~~lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l 91 (506)
.++-+.+=.-|.||+++.++|-|||.||+||+.+|++|+.+...||+-+++....++|=|
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICL 291 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcceeee
Confidence 344445557799999999999999999999999999999987777777777776666544
No 42
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.6e-05 Score=76.74 Aligned_cols=65 Identities=26% Similarity=0.420 Sum_probs=58.1
Q ss_pred CCCCCCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCC-CCCCCCCCCCCCcccccccccC
Q 010602 33 PFKRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGK-HPVTGTPLKLEDLIPLTFHKNA 97 (506)
Q Consensus 33 ~~~~lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~-~Pvtg~~l~~kdLi~l~f~kn~ 97 (506)
....++|.||.|++..|++||++|+|..|++..|.++|..-|. +|+|+.+|.-.+|||+--.+..
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkev 270 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEV 270 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHH
Confidence 4456889999999999999999999999999999999998764 9999999999999998766543
No 43
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.52 E-value=9.9e-05 Score=70.71 Aligned_cols=75 Identities=19% Similarity=0.346 Sum_probs=51.6
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeecccccccccCceEEE
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIV 117 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~t~iv 117 (506)
....|+||++++++||+++-||+||+.+|.+|+....... +. ..+. ....+...||+|+..++. ..++
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~---~~--~~~~------~~~k~~~~CPvCR~~Is~-~~Lv 84 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSR---QR--VDQY------DHKREPPKCPVCKSDVSE-ATLV 84 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccc---cc--cccc------cccCCCCcCCCCCCcCCh-hcEE
Confidence 3567999999999999999999999999999987432100 00 0000 112345689999998876 4555
Q ss_pred EEecCCe
Q 010602 118 AVKTTGN 124 (506)
Q Consensus 118 ~ik~~G~ 124 (506)
-|-..|.
T Consensus 85 Piygrg~ 91 (193)
T PLN03208 85 PIYGRGQ 91 (193)
T ss_pred EeeccCC
Confidence 5555554
No 44
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00031 Score=66.02 Aligned_cols=61 Identities=20% Similarity=0.395 Sum_probs=52.5
Q ss_pred CCCCCCCccccCCCCCCCC--ceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 010602 33 PFKRLPFYCCALTFTPFED--PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (506)
Q Consensus 33 ~~~~lpf~~C~LSl~p~~d--PV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (506)
+...-+-+-|++||.++.. ||.|..|||||+.+|...|+...+||+.++.++.|+++++.+
T Consensus 125 ~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 125 PLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 3334456889999999964 667899999999999999999999999999999999988753
No 45
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.06 E-value=0.00035 Score=71.50 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=43.8
Q ss_pred ceeecccccc--cccCceEEEEEecCCeeecHHHHHHHhcc-ccCccccCCCCCCCCCCeE
Q 010602 99 GEYHCPVLNK--VFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDLI 156 (506)
Q Consensus 99 ~~~~CPvt~k--~f~~~t~iv~ik~~G~V~s~~~v~~l~~k-~k~~~d~v~~~~f~~~DiI 156 (506)
.++.||+|+. .++...++.+. +|||+||..||+.+-.. +..| |+|++++.+.++-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~C--P~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSC--PECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCC--CCCCCccchhhcc
Confidence 3589999998 47777777766 99999999999997433 3356 9999999988743
No 46
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00037 Score=74.84 Aligned_cols=57 Identities=25% Similarity=0.417 Sum_probs=51.1
Q ss_pred ccccCCCCCCCCceecCCCceeehhhHHHHHHh-----cCCCCCCCCCCCCCCccccccccc
Q 010602 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRK-----YGKHPVTGTPLKLEDLIPLTFHKN 96 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~-----~~~~Pvtg~~l~~kdLi~l~f~kn 96 (506)
..|||||.|..-|+.|..||+||..+|+.|+.. .+.||+.+..+.++||.++.+...
T Consensus 187 ~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 379999999999999999999999999999863 457999999999999999988655
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00016 Score=80.92 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=44.9
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEec
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
+-..||+|..-+ +=++|..||||||++||+.. +...+=+||.|+.+|...||++|.
T Consensus 642 ~~LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r-~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRW----KDAVITKCGHVFCEECVQTR-YETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCch----hhHHHHhcchHHHHHHHHHH-HHHhcCCCCCCCCCCCcccccccC
Confidence 346899998433 44678999999999999987 455554559999999999999874
No 48
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.96 E-value=0.0006 Score=49.98 Aligned_cols=33 Identities=27% Similarity=0.627 Sum_probs=20.8
Q ss_pred cccccccccCceEEEEEecCCeeecHHHHHHHhc
Q 010602 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI 136 (506)
Q Consensus 103 CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~ 136 (506)
||||+. |++..+.-++-+|||||+++||++|..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence 999999 877666655566999999999999954
No 49
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.92 E-value=0.0012 Score=53.76 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=40.1
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
.+|+||+|+..|.+= | +-++|++|...+|++.... ..-.||+|+++++.+|+|.
T Consensus 3 ~~f~CpIt~~lM~dP---V-i~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---V-ILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GGGB-TTTSSB-SSE---E-EETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE
T ss_pred cccCCcCcCcHhhCc---e-eCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceE
Confidence 469999999999864 2 4589999999999998544 3445699999999999887
No 50
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.81 E-value=0.0014 Score=62.83 Aligned_cols=59 Identities=19% Similarity=0.394 Sum_probs=45.4
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhc--------------cccCccccCCCCCCCCCCeEEecC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI--------------KTKNWKELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~--------------k~k~~~d~v~~~~f~~~DiI~Lqd 160 (506)
.+++.||||...+.+- ++-+|||+||++||.+... ..+...+|+|..+++..++|+|..
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 5679999999988643 2357999999999997532 112234499999999999999864
No 51
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.70 E-value=0.0017 Score=46.11 Aligned_cols=37 Identities=35% Similarity=0.596 Sum_probs=31.3
Q ss_pred ccCCCCCCCCc-eecCCCceeehhhHHHHHHhcCCCCC
Q 010602 42 CALTFTPFEDP-VCTADGSVFELMSITPYIRKYGKHPV 78 (506)
Q Consensus 42 C~LSl~p~~dP-V~t~~G~lf~k~~I~~~L~~~~~~Pv 78 (506)
|+|+++.+.+| ++++-||+|+++.|.+|+.....+|+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcC
Confidence 88999999999 56799999999999999998666764
No 52
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.31 E-value=0.0063 Score=43.23 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=29.4
Q ss_pred cccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCC
Q 010602 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (506)
Q Consensus 103 CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~ 146 (506)
|||+...+.+ -+++.+|||+|++++++++......| |+|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~~~C--P~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKNPKC--PVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCTSB---TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCcCCC--cCC
Confidence 8999999987 45678999999999999986543334 654
No 53
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.27 E-value=0.0026 Score=67.68 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=36.5
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCC
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l 83 (506)
...|+||+..+.+||+++.||.||..+|..|+...+.||+-++++
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAED 70 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence 678999999999999999999999999999997543344433333
No 54
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.25 E-value=0.0046 Score=44.96 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=27.4
Q ss_pred ccCCCCCCCCceecCCCceeehhhHHHHHHh
Q 010602 42 CALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (506)
Q Consensus 42 C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~ 72 (506)
|+|+++.|.+||..+-||.|++..|..|..+
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~ 31 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKE 31 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCC
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHc
Confidence 8999999999999999999999999999864
No 55
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=95.90 E-value=0.0076 Score=43.84 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=33.7
Q ss_pred ecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCC
Q 010602 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (506)
Q Consensus 102 ~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~ 146 (506)
.||||...|.....++.+. |||+|.+++|.+.......| |+|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~C--P~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSC--PVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB---TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcC--Ccc
Confidence 4999999998877777655 99999999999986655555 765
No 56
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.88 E-value=0.026 Score=61.04 Aligned_cols=102 Identities=25% Similarity=0.431 Sum_probs=66.2
Q ss_pred eEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCCCccEEEEec
Q 010602 360 LNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMAN 439 (506)
Q Consensus 360 I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsman 439 (506)
+.+||. ..+|..+++|+.+.+.|.+. +-+....|+ +..+..|...+.| +. ..-.+|.|++.|
T Consensus 203 ~evE~~-~~~p~s~EH~la~~~~G~~~---Vd~~tsTfi-----------~d~~L~g~~~p~E-n~--~~R~rGtVTVRn 264 (503)
T TIGR03268 203 VEVELD-PNAPVSVEHFLALMEDGTFR---VDYRTSTFI-----------SDDSLRGLDKPEE-NI--EKRRRGAVTVRN 264 (503)
T ss_pred EEEEEc-CCCChhHHHHHHHHhCCeEE---EeeeecceE-----------ecccccCccCCcc-cc--CcccceeEEEEe
Confidence 566765 46999999999999998632 111111111 1122234555556 22 223699999999
Q ss_pred CCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcC
Q 010602 440 SGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKV 482 (506)
Q Consensus 440 ~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~ 482 (506)
.|.+. -..||.-.+.+ ..-.|+|+|+|+.|||+++--+..
T Consensus 265 ~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~G 304 (503)
T TIGR03268 265 SGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQEG 304 (503)
T ss_pred eccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccCC
Confidence 88643 45788776554 345699999999999998755443
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.84 E-value=0.011 Score=46.01 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=28.8
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCC
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~ 147 (506)
-.+.||+|.+.|.+= |.-+.|||||..++|.++....+..++|+.|
T Consensus 10 ~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 358999999999743 5467899999999999996344444448744
No 58
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.80 E-value=0.0066 Score=44.37 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=33.3
Q ss_pred ecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCC
Q 010602 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (506)
Q Consensus 102 ~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~ 147 (506)
+||+|++.+++. +...+-+|||+|+.++++++......| |+|+
T Consensus 1 ~C~~C~~~~~~~-~~~~l~~CgH~~C~~C~~~~~~~~~~C--P~C~ 43 (44)
T PF14634_consen 1 HCNICFEKYSEE-RRPRLTSCGHIFCEKCLKKLKGKSVKC--PICR 43 (44)
T ss_pred CCcCcCccccCC-CCeEEcccCCHHHHHHHHhhcCCCCCC--cCCC
Confidence 599999999443 446689999999999999985334455 7775
No 59
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.80 E-value=0.013 Score=43.79 Aligned_cols=47 Identities=21% Similarity=0.443 Sum_probs=37.0
Q ss_pred eeecccccccccCceEEEEEecCCee-ecHHHHHHHhccccCccccCCCCCCCC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V-~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
+..|+||+..+.+ +++.+|||+ |+++++.++....+.| |+|..++++
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~C--P~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKC--PICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBB--TTTTBB-SE
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCC--CcCChhhcC
Confidence 4579999987654 667899999 9999999997666677 999988753
No 60
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0058 Score=60.95 Aligned_cols=55 Identities=29% Similarity=0.446 Sum_probs=45.7
Q ss_pred CCCcc-----ccCCCCCCCCceecCCCceeehhhHHH-HHHhc-CCCCCCCCCCCCCCcccc
Q 010602 37 LPFYC-----CALTFTPFEDPVCTADGSVFELMSITP-YIRKY-GKHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 37 lpf~~-----C~LSl~p~~dPV~t~~G~lf~k~~I~~-~L~~~-~~~Pvtg~~l~~kdLi~l 91 (506)
+||-- |+||++++..|+|++.|||||..+|+. |-.+. ..||+......++++|=|
T Consensus 208 ~pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 208 LPFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred CCcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 45555 999999999999999999999999999 87654 559998888887777533
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.0073 Score=59.56 Aligned_cols=54 Identities=31% Similarity=0.440 Sum_probs=47.5
Q ss_pred CccccCCCCCCCCce----ecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 010602 39 FYCCALTFTPFEDPV----CTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (506)
Q Consensus 39 f~~C~LSl~p~~dPV----~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~ 92 (506)
-+.||++...+.+-+ +.+.|++|+++++..+|.+.+.||+|++||+-+|||.|+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lq 278 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQ 278 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeee
Confidence 467999888887642 348999999999999999999999999999999999986
No 62
>PRK00969 hypothetical protein; Provisional
Probab=95.71 E-value=0.03 Score=60.66 Aligned_cols=102 Identities=24% Similarity=0.423 Sum_probs=66.0
Q ss_pred eEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCCCccEEEEec
Q 010602 360 LNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMAN 439 (506)
Q Consensus 360 I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsman 439 (506)
+.+||.+ .+|..++.|+.+.+.|.+. +-+....|+ +..+.-|...+.| +.. .-.+|.|++.|
T Consensus 206 ~eve~~~-~~p~s~EH~la~~~~G~f~---Vd~~tstfI-----------~d~~L~g~~~p~E-n~~--~R~~GtVTVRt 267 (508)
T PRK00969 206 VEVELDP-GAPKSVEHFLALLEDGTFE---VDFETSTFI-----------ADDRLQGLKIPEE-NFE--PRRRGTVTVRT 267 (508)
T ss_pred EEEEEcC-CCCchHHHHHHHHhCCeEE---EeeeecceE-----------eeccccCccCCcc-ccC--ccccceEEEEe
Confidence 5667764 5999999999999998631 111111111 1122224555555 222 23699999999
Q ss_pred CCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcC
Q 010602 440 SGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKV 482 (506)
Q Consensus 440 ~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~ 482 (506)
.|.+. -..||.-.+.+ -.-.|+|+|+|+.|||+++--...
T Consensus 268 ~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~G 307 (508)
T PRK00969 268 AGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKEG 307 (508)
T ss_pred eccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccCC
Confidence 98653 45788776554 344699999999999998755443
No 63
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0056 Score=66.00 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=42.5
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhcc---ccCccccCCCCCCCCCCeEEecCCC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK---TKNWKELLTDEPFTKEDLITIQNPN 162 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k---~k~~~d~v~~~~f~~~DiI~Lqdp~ 162 (506)
++.||||.-... +.++-.||||||..||=++-.- ..-|.||+|...++-+|+-++-=++
T Consensus 186 ~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~ 247 (513)
T KOG2164|consen 186 DMQCPICLEPPS----VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIED 247 (513)
T ss_pred CCcCCcccCCCC----cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecc
Confidence 689999996553 2333449999999999887432 2345569999999998887654433
No 64
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.011 Score=59.56 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=46.3
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEec
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
.+.+.|-+|.....+-+ .-||||+|||.||-+-..+.-.| |+|-++|...+||-|+
T Consensus 237 ~a~~kC~LCLe~~~~pS----aTpCGHiFCWsCI~~w~~ek~eC--PlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPS----ATPCGHIFCWSCILEWCSEKAEC--PLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCceEEEecCCCCCC----cCcCcchHHHHHHHHHHccccCC--CcccccCCCcceeeec
Confidence 45688999986654332 36799999999999988777778 9999999999999986
No 65
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.42 E-value=0.011 Score=58.93 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCccccCCCCCCCCc--------eecCCCceeehhhHHHHHHhcCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDP--------VCTADGSVFELMSITPYIRKYGKHPVTGTP 82 (506)
Q Consensus 38 pf~~C~LSl~p~~dP--------V~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~ 82 (506)
+-..|++|++++.++ ++++-||+|++.+|.+|+..+.+||+-+.+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCE
Confidence 346799999998764 566889999999999999876666665443
No 66
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.27 E-value=0.014 Score=62.29 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=40.9
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCe
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~Di 155 (506)
...+.||||...|.+- ++-+|||+||..||.++......| |+|..++...++
T Consensus 24 e~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~C--P~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKC--PLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCC--CCCCCccccccC
Confidence 5679999999999653 256999999999999875444456 999999876543
No 67
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=95.04 E-value=0.023 Score=41.25 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=31.2
Q ss_pred ccccCCCCCCC---CceecCCCceeehhhHHHHHHhcCCCCC
Q 010602 40 YCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPV 78 (506)
Q Consensus 40 ~~C~LSl~p~~---dPV~t~~G~lf~k~~I~~~L~~~~~~Pv 78 (506)
+.|+|+++.+. .++..+-||+|....|.+||..+..||+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~ 42 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPV 42 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TT
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCc
Confidence 46999999984 3455588999999999999998877775
No 68
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.01 Score=60.80 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=46.1
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqd 160 (506)
.=.||||.|.--|-+- +-.+|-||||.||-....+-+.| |||+.|..-+++|.|-.
T Consensus 300 ~~~CpvClk~r~Nptv---l~vSGyVfCY~Ci~~Yv~~~~~C--PVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTV---LEVSGYVFCYPCIFSYVVNYGHC--PVTGYPASVDHLIRLFN 355 (357)
T ss_pred cccChhHHhccCCCce---EEecceEEeHHHHHHHHHhcCCC--CccCCcchHHHHHHHhc
Confidence 4589999998765543 45589999999999998877888 99999999888887654
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.50 E-value=0.033 Score=56.19 Aligned_cols=58 Identities=24% Similarity=0.408 Sum_probs=42.4
Q ss_pred CCccccCCCCCCC--Cceec--CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeecccccccccCc
Q 010602 38 PFYCCALTFTPFE--DPVCT--ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEF 113 (506)
Q Consensus 38 pf~~C~LSl~p~~--dPV~t--~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~ 113 (506)
.-++||++...|. .+.+. +.|+||..++|.+. ... +.||+|.+.|+ .
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~---------------------------~~Cp~c~~~f~-~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKS---------------------------KKCPVCGKPFT-E 162 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-ccc---------------------------ccccccCCccc-c
Confidence 4569999999995 35554 89999999998876 111 22888888887 5
Q ss_pred eEEEEEecCCe
Q 010602 114 THIVAVKTTGN 124 (506)
Q Consensus 114 t~iv~ik~~G~ 124 (506)
..||.|-+++.
T Consensus 163 ~DiI~Lnp~~e 173 (260)
T PF04641_consen 163 EDIIPLNPPEE 173 (260)
T ss_pred CCEEEecCCcc
Confidence 56777777766
No 70
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.44 E-value=0.044 Score=40.18 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=21.6
Q ss_pred ccCCCCCCCC----ceecCCCceeehhhHHHHHHhc
Q 010602 42 CALTFTPFED----PVCTADGSVFELMSITPYIRKY 73 (506)
Q Consensus 42 C~LSl~p~~d----PV~t~~G~lf~k~~I~~~L~~~ 73 (506)
|+++.+ +.+ |++.+-||+|++++|..++.+.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 888 9999999999999999999854
No 71
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.40 E-value=0.014 Score=58.09 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=30.5
Q ss_pred ccccCCCCCCCCceec-CCCceeehhhHHHHHHh
Q 010602 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRK 72 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~ 72 (506)
+.||+|+.|..+||++ ..||+|+|.+|.++|..
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~ 210 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCD 210 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhcc
Confidence 4699999999999998 78999999999999875
No 72
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=93.46 E-value=0.11 Score=36.97 Aligned_cols=31 Identities=29% Similarity=0.630 Sum_probs=29.2
Q ss_pred ccCCCCCCCCce-ecCCCceeehhhHHHHHHh
Q 010602 42 CALTFTPFEDPV-CTADGSVFELMSITPYIRK 72 (506)
Q Consensus 42 C~LSl~p~~dPV-~t~~G~lf~k~~I~~~L~~ 72 (506)
|+|+++++.+|+ +.+=||.|+...|.+|+..
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~ 32 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN 32 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh
Confidence 899999999999 7799999999999999994
No 73
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.15 Score=53.58 Aligned_cols=99 Identities=25% Similarity=0.442 Sum_probs=65.0
Q ss_pred eeEEEEcCCCChhHHHHHHHHHhccc----cCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCCCccE
Q 010602 359 DLNIELHCDITPRSCENFITLCERGY----YNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGV 434 (506)
Q Consensus 359 ~I~ieL~~d~aP~t~~NF~~L~~~g~----Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~ 434 (506)
.+.+||.. .+|+.|++|++|.+.|. |.-..| | +..+..+.+.+.| +..+. .||.
T Consensus 204 y~eve~s~-nsP~saEH~lalmedG~lri~~~tntf--------i----------s~~~lq~~~~~~e-n~d~R--erG~ 261 (512)
T COG4070 204 YFEVELSR-NSPKSAEHFLALMEDGTLRIDVTTNTF--------I----------SDDTLQEEKVPEE-NFDLR--ERGA 261 (512)
T ss_pred EEEEEeCC-CCchhHHHHHHHhhcceEEEEEeccce--------e----------eccccccccCChh-hhhhh--hcce
Confidence 35667764 49999999999999885 222222 1 1122223445555 33333 5999
Q ss_pred EEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcC
Q 010602 435 VSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKV 482 (506)
Q Consensus 435 lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~ 482 (506)
+++.|.|-++ ..-||.-.+.+ ---.|.|.|||++||++++--+..
T Consensus 262 iTvRn~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~eG 306 (512)
T COG4070 262 ITVRNVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEEG 306 (512)
T ss_pred EEEEeeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEecccC
Confidence 9999987543 45777766544 234689999999999998765544
No 74
>PHA02929 N1R/p28-like protein; Provisional
Probab=93.26 E-value=0.061 Score=53.61 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=39.8
Q ss_pred ceeecccccccccCce----EEEEEecCCeeecHHHHHHHhccccCccccCCCCCCC
Q 010602 99 GEYHCPVLNKVFTEFT----HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t----~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~ 151 (506)
.+..||||...|.+.. .+.++-+|||+|+.+||.+.-.....| |+|-.+|.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tC--PlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTC--PVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCC--CCCCCEee
Confidence 3578999999876532 356677899999999999875555567 99988775
No 75
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=93.18 E-value=0.18 Score=46.61 Aligned_cols=107 Identities=22% Similarity=0.233 Sum_probs=51.9
Q ss_pred eeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecC--ceEecCCCCCCCCCCCcccCCCCcccccccCCCCCccEE
Q 010602 358 GDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRN--FMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVV 435 (506)
Q Consensus 358 G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~--f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~l 435 (506)
-.++.+|..|.||+||+.|.++- =|.+..+|-..-+ .+|.-++....+.+ -| +.-.+..+|-|
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~~~~~~~~----------~E--N~T~~P~pGdi 72 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPDFDPFEPG----------RE--NHTVTPIPGDI 72 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--SSS-------------S---SEESS--TTEE
T ss_pred eEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCCcCcCCCC----------CC--cCcccCCCCcE
Confidence 46889999999999999999986 2344444433332 23443443211111 12 22344557777
Q ss_pred EEe--c-CCCCCC-C--ceEEEEeC--CC------CCCCCCCcEEEEEEcCHHHHHHhhc
Q 010602 436 SMA--N-SGPHTN-G--SQFFILYK--SA------THLNYKHTVFGGVVGGLTTLAAMEK 481 (506)
Q Consensus 436 sma--n-~g~~t~-~--SqFfItl~--~~------~~LDgk~tVFGrVv~G~dvL~~I~~ 481 (506)
.+. . +..+.+ + ++.=|.++ .. -+|-| .+|++|++|+|-|.++.+
T Consensus 73 ~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 73 LLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR 130 (147)
T ss_dssp EEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred EEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence 666 1 111111 1 44444443 22 22333 589999999998876653
No 76
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=92.70 E-value=0.16 Score=37.85 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=37.1
Q ss_pred ccccCCCCCCCCceecCCCce-eehhhHHHHHHhcCCCCCCCCCC
Q 010602 40 YCCALTFTPFEDPVCTADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t~~G~l-f~k~~I~~~L~~~~~~Pvtg~~l 83 (506)
..|.|+++...++++.+-||+ |+...+..|+.....+|+=+.++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 369999999999999999999 99999999999777777766554
No 77
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=92.61 E-value=0.12 Score=36.26 Aligned_cols=43 Identities=26% Similarity=0.472 Sum_probs=31.0
Q ss_pred ecccccccccCceEEEEEecCCeeecHHHHHHHhcc-ccCccccCCCCC
Q 010602 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEP 149 (506)
Q Consensus 102 ~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k-~k~~~d~v~~~~ 149 (506)
.|||+...+ ...+.+.+|||.|...+++++... ...| |+|..+
T Consensus 1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~C--p~C~~~ 44 (45)
T cd00162 1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTC--PLCRTP 44 (45)
T ss_pred CCCcCchhh---hCceEecCCCChhcHHHHHHHHHhCcCCC--CCCCCc
Confidence 389999888 344556679999999999987543 2335 777654
No 78
>PRK00969 hypothetical protein; Provisional
Probab=92.49 E-value=0.95 Score=49.43 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=70.3
Q ss_pred ceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccC
Q 010602 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (506)
Q Consensus 348 ~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 427 (506)
....+|.|+.|.|+|||. .....+.-|+..++. |.|...|=.-++- +..|-+.- .+..+ ..-
T Consensus 50 ~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~-vAfGp~~s-----------~l~p~--~~~ 111 (508)
T PRK00969 50 TKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSA-VAFGPFES-----------DLEPS--REE 111 (508)
T ss_pred cceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccc-eeEccccc-----------Ccccc--cCc
Confidence 445689999999999999 445556666665443 4555554332222 22221110 01111 111
Q ss_pred CCCCccEEEEecCCCCCCCceEEEEeCCCC---CCCCCCcEEEEEEcCHHHHHHhhcCC
Q 010602 428 LHSGRGVVSMANSGPHTNGSQFFILYKSAT---HLNYKHTVFGGVVGGLTTLAAMEKVP 483 (506)
Q Consensus 428 ~h~~~G~lsman~g~~t~~SqFfItl~~~~---~LDgk~tVFGrVv~G~dvL~~I~~~~ 483 (506)
....++-|.+.-+|-+...+.+.|...+.. -+... -|||+||.|..+|++|....
T Consensus 112 ~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~-gv~grVi~Gk~vl~~L~~~D 169 (508)
T PRK00969 112 YEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPND-GVIGRVVGGKRVLDRLTDGD 169 (508)
T ss_pred ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCC-CceEEEccchhhHhhccCCC
Confidence 233588888888887766777777665321 11111 79999999999999997643
No 79
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=91.55 E-value=0.29 Score=34.69 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=26.6
Q ss_pred cccccccccCceEEEEEecCCeeecHHHHHHHhc
Q 010602 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI 136 (506)
Q Consensus 103 CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~ 136 (506)
|||+...+.... .+.+|||.|+..++.++..
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~ 31 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLE 31 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHH
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHH
Confidence 899998887665 6789999999999999854
No 80
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=91.17 E-value=0.21 Score=33.64 Aligned_cols=37 Identities=22% Similarity=0.517 Sum_probs=31.2
Q ss_pred ccCCCCCCCCceecCCCceeehhhHHHHHH-hcCCCCC
Q 010602 42 CALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPV 78 (506)
Q Consensus 42 C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~-~~~~~Pv 78 (506)
|+|++.....|+..+-||+|....|..|+. ....+|+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCC
Confidence 788899989999999999999999999998 3344553
No 81
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.098 Score=59.14 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=49.3
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHh-cCCCCCCCCCCCCCCcccccc
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTF 93 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~-~~~~Pvtg~~l~~kdLi~l~f 93 (506)
--.|++|...++|-|++..||+||-++|-+.+.. ..+||..+.+....|+.+++.
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 4569999999999999999999999999998864 578999999999999998863
No 82
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=91.05 E-value=2.1 Score=46.71 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=71.7
Q ss_pred ceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccccc--c
Q 010602 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN--S 425 (506)
Q Consensus 348 ~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~--~ 425 (506)
....+|.|+.|.|+|+|-. ...+++-|+..++. |.|...|=.-++- +..|- |+.++. .
T Consensus 46 ~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~~-vAfGp---------------~~sdl~p~~ 105 (503)
T TIGR03268 46 TKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQE-VAFGP---------------FPSDLEPSR 105 (503)
T ss_pred cceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchhh-eeeCc---------------ccCCccccC
Confidence 4456899999999999993 55567666665543 4455443222222 22221 211111 1
Q ss_pred cCCCCCccEEEEecCCCCCCCceEEEEeCCCC--C-CCCCCcEEEEEEcCHHHHHHhhcC
Q 010602 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSAT--H-LNYKHTVFGGVVGGLTTLAAMEKV 482 (506)
Q Consensus 426 ~l~h~~~G~lsman~g~~t~~SqFfItl~~~~--~-LDgk~tVFGrVv~G~dvL~~I~~~ 482 (506)
.-....++-|.+.-+|-+...+.+.|.-.... + +....-|||+||.|..+|++|...
T Consensus 106 ~~~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~ 165 (503)
T TIGR03268 106 EPSEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDG 165 (503)
T ss_pred CcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCC
Confidence 11233688888888887777777777765432 1 222457999999999999999654
No 83
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.22 Score=49.07 Aligned_cols=61 Identities=13% Similarity=0.273 Sum_probs=46.4
Q ss_pred cCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCcc-ccCCCCCCCCCCeEEecC
Q 010602 96 NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWK-ELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 96 n~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~-d~v~~~~f~~~DiI~Lqd 160 (506)
++.+.|-|-||...= +=-++-.|||.|||.||-+.-.-..+++ ||||.-.++.+.+|.|.-
T Consensus 43 ~~~~~FdCNICLd~a----kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA----KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCCceeeeeecccc----CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 567889999998543 3334577999999999998743332222 399999999999999973
No 84
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=0.16 Score=50.85 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=40.6
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHH-Hhccc-cCccccCCCCCCCCCCeEEe
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE-LNIKT-KNWKELLTDEPFTKEDLITI 158 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~-l~~k~-k~~~d~v~~~~f~~~DiI~L 158 (506)
.++|-|++|..+.. ...-.+||||||+.||=. ...+. ..| |+|-...--++||.|
T Consensus 213 ~~d~kC~lC~e~~~----~ps~t~CgHlFC~~Cl~~~~t~~k~~~C--plCRak~~pk~viil 269 (271)
T COG5574 213 LADYKCFLCLEEPE----VPSCTPCGHLFCLSCLLISWTKKKYEFC--PLCRAKVYPKKVIIL 269 (271)
T ss_pred ccccceeeeecccC----CcccccccchhhHHHHHHHHHhhccccC--chhhhhccchhhhee
Confidence 45799999986553 344578999999999987 43322 336 999988877777765
No 85
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=90.12 E-value=0.33 Score=35.24 Aligned_cols=31 Identities=23% Similarity=0.538 Sum_probs=23.8
Q ss_pred cccccccccCceEEEEEecCCeeecHHHHHHHhcc
Q 010602 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK 137 (506)
Q Consensus 103 CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k 137 (506)
|||+...|++-.. -+|||+|+..+|.++..+
T Consensus 1 CpiC~~~~~~Pv~----l~CGH~FC~~Cl~~~~~~ 31 (42)
T PF15227_consen 1 CPICLDLFKDPVS----LPCGHSFCRSCLERLWKE 31 (42)
T ss_dssp ETTTTSB-SSEEE-----SSSSEEEHHHHHHHHCC
T ss_pred CCccchhhCCccc----cCCcCHHHHHHHHHHHHc
Confidence 8999999975432 379999999999998543
No 86
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.62 E-value=0.42 Score=33.40 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=31.5
Q ss_pred cccCCCCCCCCceec-CCCceeehhhHHHHHHh-cCCCCCC
Q 010602 41 CCALTFTPFEDPVCT-ADGSVFELMSITPYIRK-YGKHPVT 79 (506)
Q Consensus 41 ~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~-~~~~Pvt 79 (506)
.|+++++.+.+|+.. +-||.|....+..|+.. ...+|+-
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C 41 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLC 41 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCC
Confidence 388999999888876 58999999999999986 4445543
No 87
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=1.4 Score=46.59 Aligned_cols=38 Identities=24% Similarity=0.165 Sum_probs=27.1
Q ss_pred eeEEEEcCCCChhHHHHHHHHHhccc--cCCceEEEeecC
Q 010602 359 DLNIELHCDITPRSCENFITLCERGY--YNGVAFHRSIRN 396 (506)
Q Consensus 359 ~I~ieL~~d~aP~t~~NF~~L~~~g~--Y~g~~f~Rvi~~ 396 (506)
-|.||||.+.||++++-|+++..--- --....|-..++
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~kpVGkL~Vhfay~d 416 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTKPVGKLKVHFAYDD 416 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcccccccccceEEEEEeCC
Confidence 58999999999999999999863210 112355656666
No 88
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=0.16 Score=59.17 Aligned_cols=68 Identities=16% Similarity=0.075 Sum_probs=59.7
Q ss_pred CCCCccccCCCCCCCCceecC-CCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeec
Q 010602 36 RLPFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHC 103 (506)
Q Consensus 36 ~lpf~~C~LSl~p~~dPV~t~-~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~C 103 (506)
.++++.-||...++.|||+-| +|.+-||..|..+|+...+||+++.||+++++++.--.|..+..|.|
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIK 935 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence 356788899999999999997 89999999999999999999999999999999998777765555544
No 89
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.95 E-value=0.62 Score=35.18 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=23.0
Q ss_pred cccCCCCCCCCceec---CCCceeehhhHHHHHHhc
Q 010602 41 CCALTFTPFEDPVCT---ADGSVFELMSITPYIRKY 73 (506)
Q Consensus 41 ~C~LSl~p~~dPV~t---~~G~lf~k~~I~~~L~~~ 73 (506)
.|+||.++++.||=. .--.-||.++.+.+-.+.
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~ 39 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRT 39 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS
T ss_pred eCCCCCCEEEeCccCCcCcccceECHHHHHHHhhcc
Confidence 599999999999964 334469999988887753
No 90
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=0.42 Score=53.18 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=56.0
Q ss_pred CCCCccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCC
Q 010602 36 RLPFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAE 98 (506)
Q Consensus 36 ~lpf~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~ 98 (506)
.++.+.-||...+|+|||+- .+|..-|+..|..+|+..++||.++-||++.|++|.--.+..+
T Consensus 851 vPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekI 914 (929)
T COG5113 851 VPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKI 914 (929)
T ss_pred CchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHH
Confidence 34588899999999999998 6799999999999999999999999999999999986665543
No 91
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=0.5 Score=49.98 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=33.2
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccC--ccccCCCCCC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKN--WKELLTDEPF 150 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~--~~d~v~~~~f 150 (506)
-|+|||.+..=++...=+ --.||||+|.+|+.+|-. ... .+||-|-..-
T Consensus 334 vF~CPVlKeqtsdeNPPm-~L~CGHVISkdAlnrLS~-ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPM-MLICGHVISKDALNRLSK-NGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccCCCCCe-eeeccceecHHHHHHHhh-CCCeeeeCCCCCccc
Confidence 489999987665544332 356999999999999943 222 4456664433
No 92
>PHA02926 zinc finger-like protein; Provisional
Probab=85.84 E-value=0.46 Score=46.75 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=38.9
Q ss_pred ceeecccccccccC-----ceEEEEEecCCeeecHHHHHHHhccc------cCccccCCCCCCC
Q 010602 99 GEYHCPVLNKVFTE-----FTHIVAVKTTGNVFCFEAIKELNIKT------KNWKELLTDEPFT 151 (506)
Q Consensus 99 ~~~~CPvt~k~f~~-----~t~iv~ik~~G~V~s~~~v~~l~~k~------k~~~d~v~~~~f~ 151 (506)
.+-.|+||....-. .-++-.+.+|+|+||..||.+-.... +.| |+|..+|+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsC--PiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNC--PICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcC--CCCcceee
Confidence 45799999977532 33577889999999999999886421 237 99998875
No 93
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=85.02 E-value=0.67 Score=31.06 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=21.8
Q ss_pred cccccccccCceEEEEEecCCeeecHHHHHHHh
Q 010602 103 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELN 135 (506)
Q Consensus 103 CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~ 135 (506)
|||+.... ....+.+|||+|.+.+++++.
T Consensus 1 C~iC~~~~----~~~~~~~C~H~~c~~C~~~~~ 29 (39)
T smart00184 1 CPICLEEL----KDPVVLPCGHTFCRSCIRKWL 29 (39)
T ss_pred CCcCccCC----CCcEEecCCChHHHHHHHHHH
Confidence 77887663 233456799999999999874
No 94
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=0.3 Score=47.87 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHH
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIR 71 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~ 71 (506)
....|+||++.|.+|++.+.||.||+.+|..++.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~ 45 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE 45 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC
Confidence 4678999999999998889999999999999876
No 95
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=83.96 E-value=1.4 Score=35.74 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=32.1
Q ss_pred CccccCCCCCCCCc------------ee-cCCCceeehhhHHHHHHhcCCCCCC
Q 010602 39 FYCCALTFTPFEDP------------VC-TADGSVFELMSITPYIRKYGKHPVT 79 (506)
Q Consensus 39 f~~C~LSl~p~~dP------------V~-t~~G~lf~k~~I~~~L~~~~~~Pvt 79 (506)
-+.|+|++.++.+| ++ .+-||.|-...|.+||....+||+-
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~C 72 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLC 72 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCC
Confidence 45699999999544 33 3679999999999999988888863
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=83.36 E-value=0.73 Score=49.25 Aligned_cols=63 Identities=27% Similarity=0.426 Sum_probs=47.1
Q ss_pred eecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecCCCCccccc
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKV 168 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqdp~~~~~~~ 168 (506)
++|.|++++=- +-|+-..+||||-..-|+++..... +||++++|++.+|||.|-.|.-..-+.
T Consensus 1 m~CaISgEvP~---~PVvS~~Sg~vfEkrLIEqyI~e~G--~DPIt~~pLs~eelV~Ik~~~~v~pk~ 63 (506)
T KOG0289|consen 1 MVCAISGEVPE---EPVVSPVSGHVFEKRLIEQYIAETG--KDPITNEPLSIEELVEIKVPAQVRPKP 63 (506)
T ss_pred CeecccCCCCC---CccccccccchHHHHHHHHHHHHcC--CCCCCCCcCCHHHeeeccccccccCCC
Confidence 36888886642 2344566899999999999964444 469999999999999998876544333
No 97
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.12 E-value=0.56 Score=40.00 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=25.7
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHH
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIK 132 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~ 132 (506)
.-.|+||+|.|.+ ..+++-|||+||-+.|++
T Consensus 78 ~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 3579999999987 456678999999998875
No 98
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=82.62 E-value=0.64 Score=47.27 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=36.7
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCC
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTG 80 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg 80 (506)
...|-||..-+.-|+.|+.||.||.-+|-.||..+.-||+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr 66 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCR 66 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCcccc
Confidence 567999999999999999999999999999998776565543
No 99
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.59 E-value=0.64 Score=47.35 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCCCCccccCCCCCCCCceec-CCCceeehhhHHHHHH
Q 010602 34 FKRLPFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIR 71 (506)
Q Consensus 34 ~~~lpf~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~ 71 (506)
+..++ .-|+||...+++||-| ..|++||.++|...|+
T Consensus 270 ~~~i~-LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ 307 (427)
T COG5222 270 PPNIS-LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALL 307 (427)
T ss_pred CCCcc-ccCcchhhhhhCcccCccccchHHHHHHhhhhh
Confidence 33444 6799999999999988 6699999999998887
No 100
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.19 E-value=0.81 Score=47.03 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=37.4
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccc-cCccccCCCCCCCCCCeE
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLI 156 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~-k~~~d~v~~~~f~~~DiI 156 (506)
-|+|||.+..-++...-+ .-.||||++.+|+.+|-... -..+||-|-+.-.-.|+|
T Consensus 336 ~FiCPVlKe~~t~ENpP~-ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~ 392 (396)
T COG5109 336 LFICPVLKELCTDENPPV-MLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENIL 392 (396)
T ss_pred eeeccccHhhhcccCCCe-eeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhh
Confidence 399999987766655544 56799999999999994322 123346665544444444
No 101
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=80.75 E-value=1.7 Score=38.23 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=32.8
Q ss_pred CccccCCCCCCCCceecC------CCceeehhhHHHHHHhcCCCCCCCCCCCCCCccc
Q 010602 39 FYCCALTFTPFEDPVCTA------DGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~------~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~ 90 (506)
+..|||+|..-+.-|.-. -=.|||+.++.+-+.....+|++++|++..-+|.
T Consensus 40 ~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 40 HLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp HH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred HcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 566999999988777531 1359999999999999999999999999887764
No 102
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.42 E-value=1.1 Score=45.79 Aligned_cols=45 Identities=29% Similarity=0.277 Sum_probs=36.3
Q ss_pred CCCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCC
Q 010602 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGT 81 (506)
Q Consensus 36 ~lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~ 81 (506)
.+||. |-||.+++.+||++..||.||..+-+..+++...|++.++
T Consensus 239 ~~Pf~-c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~ 283 (313)
T KOG1813|consen 239 LLPFK-CFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQ 283 (313)
T ss_pred cCCcc-ccccccccccchhhcCCceeehhhhccccccCCcceeccc
Confidence 35654 7799999999999999999999998888776666655543
No 103
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.05 E-value=1.4 Score=44.51 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=34.1
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~ 151 (506)
...-.||+|++-=+.-.+ +-+|||+|||-||..=..-+-.+.||.||++..
T Consensus 237 t~~~~C~~Cg~~PtiP~~---~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHV---IGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCee---eccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345789999975443222 467999999999986433222233499997653
No 104
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=76.98 E-value=1.7 Score=44.36 Aligned_cols=58 Identities=10% Similarity=0.266 Sum_probs=40.5
Q ss_pred eccccccc--ccCceEEEEEecCCeeecHHHHHHHh-ccccCccccCCCCCCCCCCeEE--ecCCC
Q 010602 102 HCPVLNKV--FTEFTHIVAVKTTGNVFCFEAIKELN-IKTKNWKELLTDEPFTKEDLIT--IQNPN 162 (506)
Q Consensus 102 ~CPvt~k~--f~~~t~iv~ik~~G~V~s~~~v~~l~-~k~k~~~d~v~~~~f~~~DiI~--Lqdp~ 162 (506)
.||+|+.. ||..-.+. |.+|||-+|++||..|- ..+.+| |.|+.++-+..+.+ +.||.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~-in~C~H~lCEsCvd~iF~~g~~~C--peC~~iLRk~nfr~q~fED~~ 64 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLM-INECGHRLCESCVDRIFSLGPAQC--PECMVILRKNNFRVQTFEDPT 64 (300)
T ss_pred CCcccccceecCccceee-eccccchHHHHHHHHHHhcCCCCC--CcccchhhhcccchhhcchhH
Confidence 49998754 55554444 56999999999999873 223456 99999887777654 34443
No 105
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=75.88 E-value=0.73 Score=47.80 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=42.6
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCc
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDL 88 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdL 88 (506)
...|-||.+-|.-||+++.||.||--+|-.||..+..||..--+..-.+|
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 56799999999999999999999999999999988888876555544444
No 106
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=75.20 E-value=1.4 Score=42.65 Aligned_cols=44 Identities=27% Similarity=0.472 Sum_probs=33.9
Q ss_pred CCCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCC
Q 010602 36 RLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTG 80 (506)
Q Consensus 36 ~lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg 80 (506)
..|| .|-||..-++.||++..||-||-.+.+.-.++...|-+.|
T Consensus 194 ~IPF-~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cg 237 (259)
T COG5152 194 KIPF-LCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCG 237 (259)
T ss_pred CCce-eehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecc
Confidence 3555 5789999999999999999999888776666554454443
No 107
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=74.52 E-value=2.6 Score=34.21 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=31.3
Q ss_pred ecccccccccC---------ceEEEEEecCCeeecHHHHHHHhccccCccccCC
Q 010602 102 HCPVLNKVFTE---------FTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 146 (506)
Q Consensus 102 ~CPvt~k~f~~---------~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~ 146 (506)
.|+||+..|.+ ..-.+++-+|||+|-..||.+.......| |+|
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~C--P~C 72 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTC--PLC 72 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB---TTS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcC--CCC
Confidence 49999999933 23555677899999999999886545555 776
No 108
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.22 E-value=1.2 Score=46.77 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCcccccccccCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCC
Q 010602 75 KHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (506)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~D 154 (506)
.||+.-+.+..-- -+|.|........+|-++++.++.. ..-.+.|.|.||...+++.++-..+ -.||.+++.|...+
T Consensus 306 ~CpvC~~~f~~ia-~~LPfah~~~S~Lvc~isge~md~~-N~P~lfpnG~Vyg~~~L~s~~~~~~-i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 306 NCPVCCEAFKPIA-QALPFAHHAQSRLVCSISGELMDDD-NPPHLFPNGYVYGTKALESLNEDDG-IGDPRTKKVFRYSE 382 (389)
T ss_pred CCCCcccccchhh-hcCCchhhhhhHHHhhccccccCCC-CCcccccCceeehhHHHHhhcccCC-CcCCCCCccccHHH
Confidence 4777766554433 4778888888999999999999887 5556789999999999999974332 56799888886655
Q ss_pred eE
Q 010602 155 LI 156 (506)
Q Consensus 155 iI 156 (506)
.+
T Consensus 383 l~ 384 (389)
T KOG0396|consen 383 LC 384 (389)
T ss_pred HH
Confidence 43
No 109
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=74.22 E-value=1.2 Score=46.13 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=42.0
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCe
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~Di 155 (506)
-..|-||+.-| +|.+|-||||-||-=||..+--..-+| |.|-.+|++.|+
T Consensus 23 lLRC~IC~eyf----~ip~itpCsHtfCSlCIR~~L~~~p~C--P~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYF----NIPMITPCSHTFCSLCIRKFLSYKPQC--PTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHh----cCceeccccchHHHHHHHHHhccCCCC--Cceecccchhhh
Confidence 36799999777 577889999999999999886555678 999999998774
No 110
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=74.12 E-value=1.3 Score=48.44 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=41.3
Q ss_pred cccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeeccccccccc
Q 010602 41 CCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFT 111 (506)
Q Consensus 41 ~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~ 111 (506)
-|.||..|.+||+.+..-|.||+-+|.+|+...+ .+ .+ ..||+|.+.++
T Consensus 538 ~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~--------------------~~-~n-vtCP~C~i~Ls 586 (791)
T KOG1002|consen 538 ECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFM--------------------EN-NN-VTCPVCHIGLS 586 (791)
T ss_pred eecccCChhhhhHhhhhhHHHHHHHHHHHHHhhh--------------------cc-cC-CCCcccccccc
Confidence 5999999999999999999999999999998543 11 12 67999998876
No 111
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=73.55 E-value=1.4 Score=43.54 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=33.5
Q ss_pred ccccCCCCCCCCceec-CCCceeehhhHHHHHHhc--CCCCCC
Q 010602 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKY--GKHPVT 79 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~--~~~Pvt 79 (506)
+.|+|+++|...|+++ ...|.|++..|..+|.-+ ..||.-
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~ 232 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRL 232 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchh
Confidence 5699999999999997 889999999999999833 345643
No 112
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.87 E-value=1.6 Score=46.43 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=44.1
Q ss_pred eeccccccc--ccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEec
Q 010602 101 YHCPVLNKV--FTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 101 ~~CPvt~k~--f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
-.||+|... |.+++++| +-.|||.|...||++-..+.-..++|.|+.+-++.+|-.++
T Consensus 5 ~tcpiclds~~~~g~hr~v-sl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIV-SLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred ccCceeeeeeeecCceEEe-eecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 479999886 66777777 56699999999999764333333449999988888876655
No 113
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=71.46 E-value=2.4 Score=45.45 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=45.7
Q ss_pred ccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCccc
Q 010602 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~ 90 (506)
..|++|..++.+|+-+ .-||.||...|.+|+..+..||+...++....+++
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 5799999999999996 99999999999999999899999877777776665
No 114
>PHA02926 zinc finger-like protein; Provisional
Probab=69.11 E-value=3.8 Score=40.46 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=28.0
Q ss_pred CccccCCCCCCCC---------ceecCCCceeehhhHHHHHHh
Q 010602 39 FYCCALTFTPFED---------PVCTADGSVFELMSITPYIRK 72 (506)
Q Consensus 39 f~~C~LSl~p~~d---------PV~t~~G~lf~k~~I~~~L~~ 72 (506)
-.-|+||++..-+ +++.+-||+||..+|..|-..
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~ 212 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRT 212 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHh
Confidence 3579999987532 577789999999999999874
No 115
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.55 E-value=2.6 Score=44.40 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=40.1
Q ss_pred CCCCcc-------ccCCCCCCC---CceecCCCceeehhhHHHHHHhcC-CCCCCCCCCCCCCcccc
Q 010602 36 RLPFYC-------CALTFTPFE---DPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 36 ~lpf~~-------C~LSl~p~~---dPV~t~~G~lf~k~~I~~~L~~~~-~~Pvtg~~l~~kdLi~l 91 (506)
+|||.+ |.||+.-|. -|++-|+|++|-..+|+.|=...| .||.+++.+.-.+|+++
T Consensus 320 ~LPfah~~~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kv 386 (389)
T KOG0396|consen 320 ALPFAHHAQSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKV 386 (389)
T ss_pred cCCchhhhhhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHHH
Confidence 688877 677777775 378889999999999999866553 46666665555444443
No 116
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=68.43 E-value=4.8 Score=33.92 Aligned_cols=54 Identities=26% Similarity=0.512 Sum_probs=39.4
Q ss_pred CCCCCCCc-cccCCCCCCCC-ceec-CCCceeehhhHHHHHHh---cCCCCCCCCCCCCC
Q 010602 33 PFKRLPFY-CCALTFTPFED-PVCT-ADGSVFELMSITPYIRK---YGKHPVTGTPLKLE 86 (506)
Q Consensus 33 ~~~~lpf~-~C~LSl~p~~d-PV~t-~~G~lf~k~~I~~~L~~---~~~~Pvtg~~l~~k 86 (506)
.+.|.+|+ +|+-+.-|-.+ |++- .-||.|-.-.|++||.. ++.||+-+++...|
T Consensus 25 gICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 25 GICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred eeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 35566776 47778888766 7665 77999999999999985 35677766655443
No 117
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.01 E-value=2.1 Score=41.84 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=34.7
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~ 147 (506)
.+++.||||...|..- .+-+|||.||..|+..+.. ....+|+|.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcC--CCcCCcccC
Confidence 5679999999999877 6788999999999999753 112336666
No 118
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=67.71 E-value=2.6 Score=32.56 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=26.5
Q ss_pred EecCCeeecHHHHHHHhccccCccccCCCCCCCCCCe
Q 010602 119 VKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 119 ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~Di 155 (506)
+-+|||+++..|+.-- .-+.| |+|+.||...|+
T Consensus 22 ~~pCgH~I~~~~f~~~--rYngC--PfC~~~~~~~~~ 54 (55)
T PF14447_consen 22 VLPCGHLICDNCFPGE--RYNGC--PFCGTPFEFDDP 54 (55)
T ss_pred cccccceeeccccChh--hccCC--CCCCCcccCCCC
Confidence 4789999999998743 23567 999999988775
No 119
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.71 E-value=4.8 Score=41.75 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=23.3
Q ss_pred ccccCCCCC-CCCc----eecCCCceeehhhHHHHHH
Q 010602 40 YCCALTFTP-FEDP----VCTADGSVFELMSITPYIR 71 (506)
Q Consensus 40 ~~C~LSl~p-~~dP----V~t~~G~lf~k~~I~~~L~ 71 (506)
..||+|+.- ...| ++.+.||.||..+|...+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~ 40 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV 40 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc
Confidence 469998873 2233 4457899999999999764
No 120
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=67.46 E-value=1.9 Score=34.42 Aligned_cols=49 Identities=18% Similarity=0.394 Sum_probs=23.6
Q ss_pred eecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeE
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI 156 (506)
..|++|.-.|.. -|.+..|.|+|+..||... +. ..| |||..|-...|+-
T Consensus 8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~-~~-~~C--PvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDC-IG-SEC--PVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGG-TT-TB---SSS--B-S-SS--
T ss_pred cCCcHHHHHhcC---CceeccCccHHHHHHhHHh-cC-CCC--CCcCChHHHHHHH
Confidence 358888777653 3567899999999999875 33 347 9999999888863
No 121
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=65.62 E-value=4.5 Score=29.27 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=24.8
Q ss_pred cccCCCCCC---CCceecCCCceeehhhHHHHH
Q 010602 41 CCALTFTPF---EDPVCTADGSVFELMSITPYI 70 (506)
Q Consensus 41 ~C~LSl~p~---~dPV~t~~G~lf~k~~I~~~L 70 (506)
+|+++.+++ ..|+++.-||+|+...|....
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc
Confidence 477777777 467889999999999998876
No 122
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=65.43 E-value=2.8 Score=33.48 Aligned_cols=52 Identities=25% Similarity=0.454 Sum_probs=26.4
Q ss_pred CccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCccccc
Q 010602 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLT 92 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~ 92 (506)
.-.|+.+...|+.||+. .-.|+|+...|-+.+.. .||+-..|.-.+|+.-++
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~Nr 59 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQINR 59 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----H
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhhh
Confidence 34699999999999985 78999999999876653 499988888888875443
No 123
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=65.19 E-value=51 Score=29.36 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=55.2
Q ss_pred EEEEEecCeeeEEEEcCCCChhHHHHHHHHH----hccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCc-cccc
Q 010602 350 YVQLHTTHGDLNIELHCDITPRSCENFITLC----ERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK-DEVN 424 (506)
Q Consensus 350 ~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~----~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~-dE~~ 424 (506)
.++|......+.++|+.. .|+..|++.. +-..|-+ -++--++- .++ ++ .
T Consensus 2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p~---------------------~l~~~~-~ 55 (120)
T PF04126_consen 2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLPL---------------------KLPTEE-N 55 (120)
T ss_dssp EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S--------------------------SS-S
T ss_pred eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCCC---------------------CCCccc-C
Confidence 466777778899999977 7888898875 1112322 22111110 011 11 1
Q ss_pred ccCCCCCccEEEEecCCCCCCCceEEEEeCCCC-------CCCCCCcEEEEEEcCHHHHHHhhc
Q 010602 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSAT-------HLNYKHTVFGGVVGGLTTLAAMEK 481 (506)
Q Consensus 425 ~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~-------~LDgk~tVFGrVv~G~dvL~~I~~ 481 (506)
.. .-...|-|+.-..+. -|-|-|++.| .+-....++|||++|.+.|..+..
T Consensus 56 ~~-~~~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 56 PR-SSVEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp EE-SSB-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cc-ccccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 11 123577787765443 4778888775 455678999999999988887743
No 124
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=61.85 E-value=3.9 Score=41.11 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=39.3
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqd 160 (506)
+..||++++.+- +-|.-+.|||||-.+.|.++.-....|+||+-+-+ +...+|+
T Consensus 176 s~rdPis~~~I~---nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~----~~~~~~~ 229 (262)
T KOG2979|consen 176 SNRDPISKKPIV---NPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE----NPYYIQP 229 (262)
T ss_pred cccCchhhhhhh---chhhhcCcCcchhhhhHHHHhccCceeecccccCC----ccccccc
Confidence 368999987764 33556889999999999998655556777876654 5555554
No 125
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=61.42 E-value=3.4 Score=39.77 Aligned_cols=16 Identities=50% Similarity=0.870 Sum_probs=14.8
Q ss_pred eeecccccccccCceE
Q 010602 100 EYHCPVLNKVFTEFTH 115 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~ 115 (506)
-|+||-|+|+|.+|+|
T Consensus 87 IYICPFTGKVF~DNt~ 102 (238)
T PF10915_consen 87 IYICPFTGKVFGDNTH 102 (238)
T ss_pred EEEcCCcCccccCCCC
Confidence 4999999999999987
No 126
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=60.15 E-value=5.6 Score=40.65 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=37.9
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
....|-||.--| +|-++-+|||-||+=||+..--.-.+| |+|-+++-+
T Consensus 24 s~lrC~IC~~~i----~ip~~TtCgHtFCslCIR~hL~~qp~C--P~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRI----SIPCETTCGHTFCSLCIRRHLGTQPFC--PVCREDPCE 71 (391)
T ss_pred hHHHhhhhhhee----ecceecccccchhHHHHHHHhcCCCCC--ccccccHHh
Confidence 346788887554 678889999999999999875555677 999887754
No 127
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=58.53 E-value=2.7 Score=48.10 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=42.6
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCe
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~Di 155 (506)
+.-.||+|.+.|.+.-. ..-++|||.||..||.-...-...| ++|-..|.+-++
T Consensus 122 ~~~~CP~Ci~s~~DqL~-~~~k~c~H~FC~~Ci~sWsR~aqTC--PiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLE-ESEKHTAHYFCEECVGSWSRCAQTC--PVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhh-ccccccccccHHHHhhhhhhhcccC--chhhhhhheeee
Confidence 34579999999987643 3467899999999999887667777 999999976553
No 128
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=57.47 E-value=9.2 Score=29.53 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=38.3
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccC--CCCCCC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELL--TDEPFT 151 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v--~~~~f~ 151 (506)
...||+|++.|.+.-.||+=..||-+|-.+|.++.. .| .. |+.+|.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g----~C--~~~~c~~~~~ 52 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAG----GC--INYSCGTGFE 52 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhCC----ce--EeccCCCCcc
Confidence 358999999999999999999999999999999863 46 33 666664
No 129
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=55.66 E-value=6.1 Score=40.53 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=34.1
Q ss_pred eecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeE
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 156 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI 156 (506)
.-||.|++.+.+-.+- .-||+-||.+||..--+. ....|+.| .++||+
T Consensus 275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~d-sDf~CpnC----~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALLD-SDFKCPNC----SRKDVL 322 (427)
T ss_pred ccCcchhhhhhCcccC---ccccchHHHHHHhhhhhh-ccccCCCc----ccccch
Confidence 5799999999876543 459999999999965332 23344877 456654
No 130
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=55.49 E-value=8.2 Score=29.09 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=24.2
Q ss_pred eecccccccccCceEEEEEecCCee--ecHHHHHHHhccccCccccCCCCC
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEP 149 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V--~s~~~v~~l~~k~k~~~d~v~~~~ 149 (506)
..||++++.+.--.+ -+.|-|+ |..+.+=+.+.....|++|+|++|
T Consensus 3 L~CPls~~~i~~P~R---g~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVR---GKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEE---ETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCcc---CCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 469999988864222 2346655 777777777777788999999875
No 131
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.69 E-value=7.7 Score=41.70 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPV 78 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pv 78 (506)
+|. |.+|...+..||.++.||.||..+|..-+.....||.
T Consensus 84 ef~-c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~ 123 (398)
T KOG4159|consen 84 EFE-CCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPL 123 (398)
T ss_pred hhh-hhhhHhhcCCCccccccccccHHHHHHHhccCCCCcc
Confidence 344 5599999999999999999999998885554444554
No 132
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.03 E-value=8.2 Score=39.73 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=33.3
Q ss_pred ecccccccccCceEEEEEecCCeeecHHHHHHHhccc-cCccccCCCCCCCC
Q 010602 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTK 152 (506)
Q Consensus 102 ~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~-k~~~d~v~~~~f~~ 152 (506)
.||||.-+.+-- ++-.|+|+||+.|||-..... ++| .||-.||+.
T Consensus 9 eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk~~C--avCR~pids 54 (324)
T KOG0824|consen 9 ECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDKKTC--AVCRFPIDS 54 (324)
T ss_pred cceeeeccCCcC----ccccccchhhhhhhcchhhcCCCCC--ceecCCCCc
Confidence 599998766533 456799999999999654323 347 999999864
No 133
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.08 E-value=9.4 Score=42.65 Aligned_cols=45 Identities=16% Similarity=0.298 Sum_probs=37.9
Q ss_pred CCCccccCCCCCCCC-----ceecCCCceeehhhHHHHHHhcCCCCCCCC
Q 010602 37 LPFYCCALTFTPFED-----PVCTADGSVFELMSITPYIRKYGKHPVTGT 81 (506)
Q Consensus 37 lpf~~C~LSl~p~~d-----PV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~ 81 (506)
.--+.|+||.+.+.. |-.-+.||+|...++..|++...+||+-.-
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 346789999999998 666799999999999999998777776543
No 134
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=46.16 E-value=8.2 Score=37.46 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=34.1
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~ 149 (506)
.|.|-||+|.|. +++| -.|||-||..|.-.=-.+...| .+|++.
T Consensus 196 PF~C~iCKkdy~--spvv--t~CGH~FC~~Cai~~y~kg~~C--~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYE--SPVV--TECGHSFCSLCAIRKYQKGDEC--GVCGKA 239 (259)
T ss_pred ceeehhchhhcc--chhh--hhcchhHHHHHHHHHhccCCcc--eecchh
Confidence 489999999985 5555 6899999999866544566677 888864
No 135
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.21 E-value=26 Score=36.31 Aligned_cols=51 Identities=8% Similarity=0.166 Sum_probs=41.0
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhc-cccCccccCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFT 151 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~-k~k~~~d~v~~~~f~ 151 (506)
.+..-|.||...|..+-+ +.+-||-|+|--.||++-.. =...| |+|..++.
T Consensus 321 ~~GveCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~y~~~C--PvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLGYSNKC--PVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccce-EEEeccCceechhHHHHHHhhhcccC--CccCCCCC
Confidence 445789999999998888 45689999999999998754 24456 99987753
No 136
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=15 Score=39.16 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=45.5
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhc-cc--cCccccCCCCCCCCCCeEEecCCCCccccccccchhhc
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KT--KNWKELLTDEPFTKEDLITIQNPNALDTKVTLEFDHVK 176 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~-k~--k~~~d~v~~~~f~~~DiI~Lqdp~~~~~~~~~~f~~vk 176 (506)
.-.|-||-.-|-+...+-.|-+|||||-.-|+.+.-- .+ .+| |+|- ||+|...- .|-+.|+||.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~c--pic~----------ik~~~r~~-~N~~~~d~vv 70 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGC--PICQ----------IKLQERHV-ANPSTVDHVV 70 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCC--Ccee----------ecccceee-echhhhhhhh
Confidence 4579999555555555666788999999999998621 12 245 7775 44443221 1456788988
Q ss_pred cCcccChH
Q 010602 177 KGLKVDDE 184 (506)
Q Consensus 177 ~~~~~~~~ 184 (506)
+.--+-+-
T Consensus 71 Ee~~Vld~ 78 (465)
T KOG0827|consen 71 EESVVLDW 78 (465)
T ss_pred ccchhhhH
Confidence 75444443
No 137
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.15 E-value=15 Score=38.87 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=33.6
Q ss_pred ccccCCCCCCCC--ce-ecCCCceeehhhHHHHHHhcCC-CCCCCC
Q 010602 40 YCCALTFTPFED--PV-CTADGSVFELMSITPYIRKYGK-HPVTGT 81 (506)
Q Consensus 40 ~~C~LSl~p~~d--PV-~t~~G~lf~k~~I~~~L~~~~~-~Pvtg~ 81 (506)
+-|+||++-++. -+ +-|.+|.|=..+|-+||.++++ ||+-.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCC
Confidence 589999999873 44 4599999999999999998754 665543
No 138
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.88 E-value=21 Score=35.98 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=31.2
Q ss_pred CccccCCCCCCCCc--eec--CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 010602 39 FYCCALTFTPFEDP--VCT--ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 39 f~~C~LSl~p~~dP--V~t--~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l 91 (506)
-+.|||+..+|..- .|. ..|++|+-.++.+.= ...|++.|.+...+|+|.|
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEee
Confidence 45799999999764 233 779999988776642 2334444444444444333
No 139
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=43.77 E-value=12 Score=22.45 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=8.7
Q ss_pred eecccccccccCc
Q 010602 101 YHCPVLNKVFTEF 113 (506)
Q Consensus 101 ~~CPvt~k~f~~~ 113 (506)
|.||+|.+.|...
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 7899999888754
No 140
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=43.40 E-value=14 Score=30.84 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=34.9
Q ss_pred CCccccCCCCCCCCceec----------------CCCceeehhhHHHHHHhcCCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCT----------------ADGSVFELMSITPYIRKYGKHPVTGTPLKL 85 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t----------------~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~ 85 (506)
|-+.|+||..++.++... .--|.|-.-.|..||...+.||+..++--+
T Consensus 19 ~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 19 PIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 446677777776665432 124778899999999999999998776543
No 141
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=30 Score=36.79 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=35.7
Q ss_pred CccccCCCCCCCCce-------------ecCCCceeehhhHHHHHHhcCCCCCCCCCCC
Q 010602 39 FYCCALTFTPFEDPV-------------CTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (506)
Q Consensus 39 f~~C~LSl~p~~dPV-------------~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~ 84 (506)
-..|.||..-+-+|= --+.||++-.+++..|+....+||+...|+-
T Consensus 287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 346888887754432 3477999999999999999999998877643
No 142
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=40.98 E-value=13 Score=22.58 Aligned_cols=14 Identities=36% Similarity=0.918 Sum_probs=11.2
Q ss_pred eecccccccccCce
Q 010602 101 YHCPVLNKVFTEFT 114 (506)
Q Consensus 101 ~~CPvt~k~f~~~t 114 (506)
|.||.|.+.|....
T Consensus 1 y~C~~C~~~f~~~~ 14 (23)
T PF00096_consen 1 YKCPICGKSFSSKS 14 (23)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCccCCHH
Confidence 68999999987643
No 143
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=39.71 E-value=25 Score=35.87 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=39.2
Q ss_pred CceeecccccccccCce---------------EEEEEecCCeee-cHHHHHHHhcccc-CccccCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFT---------------HIVAVKTTGNVF-CFEAIKELNIKTK-NWKELLTDEPFTK 152 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t---------------~iv~ik~~G~V~-s~~~v~~l~~k~k-~~~d~v~~~~f~~ 152 (506)
.++|+||-|+|.....+ +..--+.||-|| +..|++-....-. .|.+.+||+.|.+
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSR 199 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSR 199 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccc
Confidence 46799999999987765 222235689886 5677776643333 5777999999976
No 144
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.78 E-value=20 Score=38.48 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=44.6
Q ss_pred CCCCcccccccccC--------CceeecccccccccCceEEEEEecCCeeecHHHHHHHh--------ccccCccccCCC
Q 010602 84 KLEDLIPLTFHKNA--------EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELN--------IKTKNWKELLTD 147 (506)
Q Consensus 84 ~~kdLi~l~f~kn~--------~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~--------~k~k~~~d~v~~ 147 (506)
++.||++.....+. ..-|.|-||+.++.+...|+ .-||+||||..|++..- ++.-+|-|+-|+
T Consensus 160 ~~~sl~~~Il~~deea~~~~F~~slf~C~ICf~e~~G~~c~~-~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 160 SIDSLKKEILQFDEEATLEKFVNSLFDCCICFEEQMGQHCFK-FLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ChHHHHHHHHhhhHHHHHHHHHhhcccceeeehhhcCcceee-ecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 55666666555543 23599999999998765555 67999999999988542 233456566665
Q ss_pred CC
Q 010602 148 EP 149 (506)
Q Consensus 148 ~~ 149 (506)
+.
T Consensus 239 ~~ 240 (445)
T KOG1814|consen 239 SV 240 (445)
T ss_pred cc
Confidence 43
No 145
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=37.10 E-value=11 Score=39.05 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=26.2
Q ss_pred EecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 119 VKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 119 ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
+.+|-||||++|-.-- ..|.| +.|++++.+-.-|+
T Consensus 106 mIPCkHvFCl~CAr~~--~dK~C--p~C~d~VqrIeq~~ 140 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSD--SDKIC--PLCDDRVQRIEQIM 140 (389)
T ss_pred ccccchhhhhhhhhcC--ccccC--cCcccHHHHHHHhc
Confidence 4579999999998642 46788 99998876654444
No 146
>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]
Probab=34.97 E-value=25 Score=38.72 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=59.3
Q ss_pred CccccCCCCCCCCcee-cCCCceeehhhHHHHHHhcC---CCCCCCCCCCCCCcccccccccCCceeecccccccccCce
Q 010602 39 FYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYG---KHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFT 114 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~-t~~G~lf~k~~I~~~L~~~~---~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~t 114 (506)
-+.|..+...+.+.-. ..+|++|+.+...+|+.-.. .-|+.++.|... .-.|+.+ .|.|-.|.+.|.+..
T Consensus 330 ~~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~~v~a~---~~~wH~~---cf~C~~C~~~~~~~~ 403 (479)
T KOG1703|consen 330 HFSCEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCLLPILEEGVCAL---GRLWHPE---CFVCADCGKPLKNSS 403 (479)
T ss_pred ceeeccccccccCCCccccCCCccHHHHHHHhhCccccccCCchHHhHhhhc---cCeechh---ceeeecccCCCCCCc
Confidence 3445566555555443 47788888888888876432 246666555443 4455544 689999977777665
Q ss_pred EEEEEecCCeeecHHHHHHHh
Q 010602 115 HIVAVKTTGNVFCFEAIKELN 135 (506)
Q Consensus 115 ~iv~ik~~G~V~s~~~v~~l~ 135 (506)
. ....|..||+.+++++.
T Consensus 404 ~---~~~~~~pyce~~~~~~~ 421 (479)
T KOG1703|consen 404 F---FESDGEPYCEDHYKKLF 421 (479)
T ss_pred c---cccCCccchhhhHhhhc
Confidence 4 35689999999999985
No 147
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.62 E-value=21 Score=39.90 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=43.6
Q ss_pred eeecccccccccCceEEEE-EecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecCCC
Q 010602 100 EYHCPVLNKVFTEFTHIVA-VKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPN 162 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~-ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqdp~ 162 (506)
.=.|+||...+..-.++.. +-+|||+|...|+++--.-...| |.|-..+-...++-...++
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtC--P~CR~~~~~~~~~~~~~~~ 352 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTC--PTCRTVLYDYVLWQIAALQ 352 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcC--CcchhhhhccccccccCCc
Confidence 4589999999887544333 44799999999999875556678 9988766555554444433
No 148
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=33.00 E-value=33 Score=25.91 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=22.9
Q ss_pred ceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeecccccccc
Q 010602 52 PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVF 110 (506)
Q Consensus 52 PV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f 110 (506)
|+|.. | |+...+..++.... ..+...++||||...+
T Consensus 6 P~C~~-~--~~~~~L~~H~~~~H--------------------~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 6 PYCGK-G--FSESSLVEHCEDEH--------------------RSESKNVVCPICSSRV 41 (54)
T ss_pred CCCCC-c--cCHHHHHHHHHhHC--------------------cCCCCCccCCCchhhh
Confidence 66655 4 77777888777532 1223357999997643
No 149
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.08 E-value=37 Score=36.33 Aligned_cols=70 Identities=24% Similarity=0.344 Sum_probs=48.6
Q ss_pred eecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecCCCCccc--------cccccc
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDT--------KVTLEF 172 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqdp~~~~~--------~~~~~f 172 (506)
+||.++...|..- ++ -..|.||-..+|--...+- -..|++|+|+.-+|+|.|.=-.|.+. +....|
T Consensus 41 ~hC~lt~~Pfe~P--vC--~~dg~vFd~~~Ivp~lkk~--g~nP~tG~kl~~~dLIkL~F~Kns~geyhcPvlfk~FT~~ 114 (518)
T KOG0883|consen 41 NHCSLTMLPFEDP--VC--TVDGTVFDLTAIVPWLKKH--GTNPITGQKLDGKDLIKLKFHKNSEGEYHCPVLFKVFTRF 114 (518)
T ss_pred hhceeccccccCc--cc--ccCCcEEeeehhhHHHHHc--CCCCCCCCccccccceeeeeccCCCCcccCceeeeeeccc
Confidence 5888888888643 22 2369999999988775433 34599999999999999974433332 224566
Q ss_pred hhhc
Q 010602 173 DHVK 176 (506)
Q Consensus 173 ~~vk 176 (506)
-||=
T Consensus 115 sHIv 118 (518)
T KOG0883|consen 115 SHIV 118 (518)
T ss_pred ceEE
Confidence 6654
No 150
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.92 E-value=20 Score=35.77 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=32.0
Q ss_pred eecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCC
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 150 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f 150 (506)
.||=.|+.-=. .+=.+|-.|+||||..|.+.- -+..| ++|.++.
T Consensus 4 VhCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~--~~~~C--~lCkk~i 47 (233)
T KOG4739|consen 4 VHCNKCFRFPS--QDPFFLTACRHVFCEPCLKAS--SPDVC--PLCKKSI 47 (233)
T ss_pred EEeccccccCC--CCceeeeechhhhhhhhcccC--Ccccc--cccccee
Confidence 47888875433 444568899999999999864 23367 9998873
No 151
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=46 Score=34.04 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=32.3
Q ss_pred ccccCCCCCCCCceec-CCCceeehhhHHHHHHhc--CCCCCCCC
Q 010602 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKY--GKHPVTGT 81 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~--~~~Pvtg~ 81 (506)
--|++|..+-..|.+. +.||+||.-+|..-+.-. =+||.-|+
T Consensus 240 ~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~ 284 (298)
T KOG2879|consen 240 TECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGE 284 (298)
T ss_pred ceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCC
Confidence 3599999999999877 699999999998766521 24665544
No 152
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=30.90 E-value=16 Score=38.13 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=35.1
Q ss_pred CCCccccCCCCCCCCcee-cCCCceeehhhHHHHHHhcCCCCCC
Q 010602 37 LPFYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKYGKHPVT 79 (506)
Q Consensus 37 lpf~~C~LSl~p~~dPV~-t~~G~lf~k~~I~~~L~~~~~~Pvt 79 (506)
-|.-.|.||..-|.|+-. +..=|.||+.+|+.||.....||.-
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C 56 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTC 56 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 356779999999999964 4667999999999999987666654
No 153
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=30.80 E-value=26 Score=35.18 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=20.8
Q ss_pred ccccCCCCCCC---CceecCCCceeehh
Q 010602 40 YCCALTFTPFE---DPVCTADGSVFELM 64 (506)
Q Consensus 40 ~~C~LSl~p~~---dPV~t~~G~lf~k~ 64 (506)
+.||+|.+||. ..++|+.||.||..
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 57999999995 55888999999843
No 154
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=29.85 E-value=23 Score=33.59 Aligned_cols=8 Identities=38% Similarity=0.899 Sum_probs=6.9
Q ss_pred eeeccccc
Q 010602 100 EYHCPVLN 107 (506)
Q Consensus 100 ~~~CPvt~ 107 (506)
-|+||||+
T Consensus 134 ~~vC~vCG 141 (166)
T COG1592 134 VWVCPVCG 141 (166)
T ss_pred EEEcCCCC
Confidence 79999994
No 155
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.62 E-value=26 Score=38.46 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=36.0
Q ss_pred CccccCCCCCCC-----------------CceecCCCceeehhhHHHHHHhcC-CCCCCCCCCC
Q 010602 39 FYCCALTFTPFE-----------------DPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLK 84 (506)
Q Consensus 39 f~~C~LSl~p~~-----------------dPV~t~~G~lf~k~~I~~~L~~~~-~~Pvtg~~l~ 84 (506)
-.-|+||.+|.. +=++||.-|+|-+.+++.|+..++ .||+...||-
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 456999998865 234568899999999999999776 6887776653
No 156
>PF14353 CpXC: CpXC protein
Probab=28.44 E-value=44 Score=29.66 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=19.0
Q ss_pred ceeecccccccccCceEEEEEecCCe
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGN 124 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~ 124 (506)
..|.||.|+..|.=...+++..+..+
T Consensus 37 ~~~~CP~Cg~~~~~~~p~lY~D~~~~ 62 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEYPLLYHDPEKK 62 (128)
T ss_pred CEEECCCCCCceecCCCEEEEcCCCC
Confidence 35788888888877777777776443
No 157
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=27.63 E-value=46 Score=30.34 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCcccccccccCCceeecccccc
Q 010602 75 KHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNK 108 (506)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k 108 (506)
.||..|-||-- -.|+.+||||..
T Consensus 30 hCp~Cg~PLF~-----------KdG~v~CPvC~~ 52 (131)
T COG1645 30 HCPKCGTPLFR-----------KDGEVFCPVCGY 52 (131)
T ss_pred hCcccCCccee-----------eCCeEECCCCCc
Confidence 47777666532 256677777764
No 158
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=26.44 E-value=36 Score=21.77 Aligned_cols=14 Identities=21% Similarity=0.550 Sum_probs=11.1
Q ss_pred eeecccccccccCc
Q 010602 100 EYHCPVLNKVFTEF 113 (506)
Q Consensus 100 ~~~CPvt~k~f~~~ 113 (506)
.|.|++|.+.|++.
T Consensus 1 q~~C~~C~k~f~~~ 14 (27)
T PF12171_consen 1 QFYCDACDKYFSSE 14 (27)
T ss_dssp -CBBTTTTBBBSSH
T ss_pred CCCcccCCCCcCCH
Confidence 37899999999864
No 159
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=26.39 E-value=32 Score=21.29 Aligned_cols=13 Identities=31% Similarity=0.669 Sum_probs=10.7
Q ss_pred eecccccccccCc
Q 010602 101 YHCPVLNKVFTEF 113 (506)
Q Consensus 101 ~~CPvt~k~f~~~ 113 (506)
|.|.+|.+.|++.
T Consensus 1 ~~C~~C~~~f~s~ 13 (25)
T PF12874_consen 1 FYCDICNKSFSSE 13 (25)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCCcCCH
Confidence 7899999888764
No 160
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=26.02 E-value=43 Score=36.24 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=11.2
Q ss_pred Cceeeccccccccc
Q 010602 98 EGEYHCPVLNKVFT 111 (506)
Q Consensus 98 ~~~~~CPvt~k~f~ 111 (506)
...|.||+|.+.|+
T Consensus 126 ~~~Y~Cp~C~kkyt 139 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYT 139 (436)
T ss_pred cccccCCccccchh
Confidence 35699999998876
No 161
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=35 Score=35.32 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=37.2
Q ss_pred ccccCCCCCCCCceecCCCceeehhhHHHHHHh-cCCCCCCCCCCCC
Q 010602 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKL 85 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~-~~~~Pvtg~~l~~ 85 (506)
.-|+||++-...||.-..+|.||..+|.--.+. .+.||+...|+..
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 469999999999988899999999999865553 4568887766653
No 162
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=25.14 E-value=83 Score=34.68 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=26.8
Q ss_pred CCceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCC
Q 010602 97 AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 149 (506)
Q Consensus 97 ~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~ 149 (506)
....|.|++|+-+.....- -+..++---..++.| +..|.||+|+.+
T Consensus 422 ~~~~~~c~~c~~~yd~~~g----~~~~~~~~gt~~~~l---p~~~~cp~c~~~ 467 (479)
T PRK05452 422 LGPRMQCSVCQWIYDPAKG----EPMQDVAPGTPWSEV---PDNFLCPECSLG 467 (479)
T ss_pred CCCeEEECCCCeEECCCCC----CcccCCCCCCChhhC---CCCCcCcCCCCc
Confidence 3567999888655443210 011223333456666 568899999965
No 163
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=25.01 E-value=36 Score=21.83 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=11.6
Q ss_pred Cceeeccccccccc
Q 010602 98 EGEYHCPVLNKVFT 111 (506)
Q Consensus 98 ~~~~~CPvt~k~f~ 111 (506)
+-.|.||.|.+.|.
T Consensus 12 ~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 12 EKPYKCPYCGKSFS 25 (26)
T ss_dssp SSSEEESSSSEEES
T ss_pred CCCCCCCCCcCeeC
Confidence 34599999999986
No 164
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.51 E-value=54 Score=34.71 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCCcccccccccCCc--eeecccccccccCceEEEEEecCCeeecHHHHHHHhccc-cCccccCCCC
Q 010602 85 LEDLIPLTFHKNAEG--EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDE 148 (506)
Q Consensus 85 ~kdLi~l~f~kn~~~--~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~-k~~~d~v~~~ 148 (506)
++++--..|+..++. -..|.||...|...-++.+ -||+|.|--.||+---... ..| |+|-.
T Consensus 212 l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRi-LPC~H~FH~~CIDpWL~~~r~~C--PvCK~ 275 (348)
T KOG4628|consen 212 LKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRI-LPCSHKFHVNCIDPWLTQTRTFC--PVCKR 275 (348)
T ss_pred HhhCCcEEeccccccCCCceEEEeecccccCCeeeE-ecCCCchhhccchhhHhhcCccC--CCCCC
Confidence 444444455554321 1599999999999988885 8999999999999765444 347 99964
No 166
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.67 E-value=51 Score=31.46 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=23.8
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~ 153 (506)
...|+||-|++.|+- .+|++ ....||+||.++...
T Consensus 115 ~~~Y~Cp~C~~rytf---------------~eA~~------~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 115 NMFFFCPNCHIRFTF---------------DEAME------YGFRCPQCGEMLEEY 149 (178)
T ss_pred CCEEECCCCCcEEeH---------------HHHhh------cCCcCCCCCCCCeec
Confidence 457999999877652 24443 245559999988764
No 167
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=28 Score=39.38 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=28.7
Q ss_pred ecccccccccCceEEEEEecCCeeecHHHHHHHh
Q 010602 102 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELN 135 (506)
Q Consensus 102 ~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~ 135 (506)
.|++|.-.|-..+..-+--.|||++|..|++.|-
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly 46 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY 46 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHh
Confidence 7999987887777776667799999999999984
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.96 E-value=39 Score=36.76 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred ccCCCCCCCCce---ec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeecccccccccCceEEE
Q 010602 42 CALTFTPFEDPV---CT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIV 117 (506)
Q Consensus 42 C~LSl~p~~dPV---~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~t~iv 117 (506)
||+||+.|..-+ ++ .--|.|.-.++..| ....||+.+.-.+.. ....-.|-+|...++
T Consensus 178 CpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p~----------~ve~~~c~~c~~~~~------ 239 (493)
T KOG0804|consen 178 CPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSPS----------VVESSLCLACGCTED------ 239 (493)
T ss_pred cchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCcc----------hhhhhhhhhhccccc------
Q ss_pred EEec---CCeeec
Q 010602 118 AVKT---TGNVFC 127 (506)
Q Consensus 118 ~ik~---~G~V~s 127 (506)
+|- ||||-|
T Consensus 240 -LwicliCg~vgc 251 (493)
T KOG0804|consen 240 -LWICLICGNVGC 251 (493)
T ss_pred -EEEEEEccceec
No 169
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=21.37 E-value=55 Score=37.48 Aligned_cols=94 Identities=16% Similarity=0.278 Sum_probs=57.4
Q ss_pred eehhhHHHHHHhcCCCCCCCCCCCC-CCcccccccccCC-c--------eeecccccccccCceEEEEEecCCeeecHHH
Q 010602 61 FELMSITPYIRKYGKHPVTGTPLKL-EDLIPLTFHKNAE-G--------EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEA 130 (506)
Q Consensus 61 f~k~~I~~~L~~~~~~Pvtg~~l~~-kdLi~l~f~kn~~-~--------~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~ 130 (506)
|..+.|++-++..+ .....+.. ..++..+.+..++ + .+.||++++-+.=-.+-. .|.|.=|.++
T Consensus 260 ~t~~~llq~~~~~~---~~~~~~~~s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~---~CkHlQcFD~ 333 (636)
T KOG2169|consen 260 LTSKDLLQRLKQNG---KINRNLSQSDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMRMSLPARGH---TCKHLQCFDA 333 (636)
T ss_pred cCHHHHHHHHhccC---CccCchhHhHHHhhcccccCCcccceeccceeEecCCcccceeecCCccc---ccccceecch
Confidence 33566666555332 22222232 2344555555543 1 489999997765443333 3776555554
Q ss_pred H--HHHhccccCccccCCCCCCCCCCeEEecC
Q 010602 131 I--KELNIKTKNWKELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 131 v--~~l~~k~k~~~d~v~~~~f~~~DiI~Lqd 160 (506)
+ -++|.+.-.|+|+||++.+.=+++|..+.
T Consensus 334 ~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~ 365 (636)
T KOG2169|consen 334 LSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGY 365 (636)
T ss_pred hhhHHhccCCCeeeCccCCccccccchhhhHH
Confidence 4 46677777899999999999899888654
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=20.97 E-value=46 Score=34.94 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=34.6
Q ss_pred CceeecccccccccCceEEEEEecCCe---eecHHHHHHHhccccCccccCCCCCCCCCCe
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGN---VFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~---V~s~~~v~~l~~k~k~~~d~v~~~~f~~~Di 155 (506)
+.+| ||.|..+|-=.-+=+.--+||- -|||.-|++= =+.+||.|...++++.+
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~----lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN----LNGRCPACRRKYDDENV 68 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhh----ccCCChHhhhhccccce
Confidence 3445 9999988754444444457884 4555555542 23455999999998886
No 171
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.05 E-value=77 Score=29.08 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=23.7
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~D 154 (506)
...|+||.|+..|+- .+++.-+. ......||.||.++...|
T Consensus 97 ~~~Y~Cp~C~~~y~~---------------~ea~~~~d-~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 97 NAYYKCPNCQSKYTF---------------LEANQLLD-MDGTFTCPRCGEELEEDD 137 (147)
T ss_pred CcEEECcCCCCEeeH---------------HHHHHhcC-CCCcEECCCCCCEEEEcC
Confidence 457999977766541 23333222 233355699998775444
Done!