Query 010602
Match_columns 506
No_of_seqs 421 out of 2143
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fu0_A Cyclophilin, putative; 100.0 7.1E-49 2.4E-53 364.2 18.7 156 348-503 5-160 (160)
2 1zkc_A Peptidyl-prolyl CIS-tra 100.0 1.8E-48 6.3E-53 371.9 20.3 161 343-503 14-175 (197)
3 2x7k_A Peptidyl-prolyl CIS-tra 100.0 1.8E-48 6.2E-53 363.5 19.1 156 347-502 10-165 (166)
4 2a2n_A Peptidylprolyl isomeras 100.0 3E-48 1E-52 365.1 19.2 157 346-502 19-176 (176)
5 2ok3_A Peptidyl-prolyl CIS-tra 100.0 3.3E-48 1.1E-52 360.3 18.8 154 350-503 2-156 (161)
6 3bo7_A Peptidyl-prolyl CIS-tra 100.0 7.6E-48 2.6E-52 369.7 18.9 159 345-503 3-173 (201)
7 2b71_A Cyclophilin-like protei 100.0 8.4E-48 2.9E-52 367.3 18.7 157 347-503 37-193 (196)
8 2poe_A Cyclophilin-like protei 100.0 9.1E-48 3.1E-52 364.5 18.6 160 344-503 12-175 (185)
9 2k7n_A Peptidyl-prolyl CIS-tra 100.0 5E-47 1.7E-51 363.4 17.0 158 347-504 10-167 (203)
10 1w74_A Peptidyl-prolyl CIS-tra 100.0 2.6E-46 8.8E-51 355.9 18.9 155 345-502 20-191 (191)
11 2hq6_A Serologically defined c 100.0 9.4E-46 3.2E-50 350.5 18.6 158 345-503 21-180 (185)
12 2wfi_A Peptidyl-prolyl CIS-tra 100.0 6.8E-45 2.3E-49 343.3 20.2 153 348-501 11-178 (179)
13 1mzw_A Cyclophilin H, U-snRNP- 100.0 4E-45 1.4E-49 344.3 18.3 146 355-501 22-176 (177)
14 1a58_A Cyclophilin; isomerase, 100.0 7.2E-45 2.5E-49 342.6 19.7 146 355-501 18-175 (177)
15 2haq_A Cyclophilin; rotamase, 100.0 7E-45 2.4E-49 340.8 18.5 145 355-501 23-171 (172)
16 3ich_A Peptidyl-prolyl CIS-tra 100.0 7.1E-45 2.4E-49 345.5 18.5 147 355-502 27-177 (188)
17 2cmt_A Peptidyl-prolyl CIS-tra 100.0 1.1E-44 3.7E-49 339.8 19.4 145 355-501 22-170 (172)
18 3bkp_A Cyclophilin; malaria, i 100.0 5E-45 1.7E-49 356.6 17.7 159 344-503 17-193 (232)
19 2he9_A NK-tumor recognition pr 100.0 8.2E-45 2.8E-49 346.0 18.6 150 354-504 30-191 (192)
20 2r99_A Peptidyl-prolyl CIS-tra 100.0 2.1E-44 7.3E-49 338.2 19.6 145 355-501 23-171 (173)
21 1qng_A Peptidyl-prolyl CIS-tra 100.0 1.7E-44 5.7E-49 338.1 18.7 145 355-501 15-169 (170)
22 2igv_A Peptidyl-prolyl CIS-tra 100.0 2.5E-44 8.7E-49 337.7 19.1 147 355-503 15-172 (173)
23 2z6w_A Peptidyl-prolyl CIS-tra 100.0 2.6E-44 8.9E-49 335.3 18.0 146 355-502 15-164 (165)
24 3s6m_A Peptidyl-prolyl CIS-tra 100.0 1.7E-44 5.7E-49 337.3 16.5 151 348-501 3-166 (167)
25 3pmp_A Cyclophilin A; peptidyl 100.0 7.3E-44 2.5E-48 332.0 20.1 145 355-501 14-162 (164)
26 4fru_A Cyclophilin B, peptidyl 100.0 4.2E-44 1.5E-48 339.7 17.9 146 355-501 24-173 (185)
27 2poy_A Peptidyl-prolyl CIS-tra 100.0 8.4E-44 2.9E-48 337.4 18.4 144 355-500 31-185 (186)
28 1lop_A Cyclophilin A; rotamase 100.0 2.4E-44 8.1E-49 335.3 14.0 149 351-502 2-163 (164)
29 1v9t_A Cyclophilin B; beta bar 100.0 5.7E-44 1.9E-48 333.4 16.2 153 347-502 3-165 (166)
30 2c3b_A Ppiase, cyclophilin; is 100.0 1.8E-44 6.2E-49 338.4 11.7 148 353-501 17-171 (172)
31 1z81_A Cyclophilin; structural 100.0 2.3E-43 8E-48 343.5 17.6 153 348-501 59-228 (229)
32 3rdd_A Peptidyl-prolyl CIS-tra 100.0 8.3E-43 2.8E-47 330.3 18.8 152 349-502 23-183 (184)
33 3k2c_A Peptidyl-prolyl CIS-tra 100.0 1.9E-42 6.5E-47 330.0 20.1 153 348-502 29-190 (193)
34 2ose_A Probable peptidyl-proly 100.0 1.5E-42 5.1E-47 339.6 16.4 146 355-503 26-207 (234)
35 1ihg_A Cyclophilin 40; ppiase 100.0 3.1E-41 1.1E-45 350.2 18.2 153 349-503 16-185 (370)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 2.1E-37 7.2E-42 319.3 9.7 136 346-482 168-345 (369)
37 2bay_A PRE-mRNA splicing facto 99.5 5E-15 1.7E-19 115.4 4.3 56 40-95 4-60 (61)
38 4ap4_A E3 ubiquitin ligase RNF 99.2 1.1E-11 3.8E-16 109.0 6.0 116 39-159 7-132 (133)
39 2kr4_A Ubiquitin conjugation f 99.2 5.5E-12 1.9E-16 104.3 3.6 67 35-101 9-76 (85)
40 1wgm_A Ubiquitin conjugation f 99.2 8.4E-12 2.9E-16 106.1 3.7 69 33-101 15-85 (98)
41 2kre_A Ubiquitin conjugation f 99.1 1.2E-11 4.2E-16 105.4 3.2 66 37-102 27-92 (100)
42 2f42_A STIP1 homology and U-bo 99.0 4.6E-11 1.6E-15 112.2 2.0 65 37-101 104-169 (179)
43 2yu4_A E3 SUMO-protein ligase 98.9 3.1E-10 1E-14 95.5 1.6 64 38-101 6-79 (94)
44 2c2l_A CHIP, carboxy terminus 98.8 1.4E-09 4.9E-14 107.1 3.3 67 35-101 204-271 (281)
45 1t1h_A Gspef-atpub14, armadill 98.6 3.2E-08 1.1E-12 79.5 3.6 63 37-99 6-69 (78)
46 3m62_A Ubiquitin conjugation f 98.5 2.4E-08 8.2E-13 113.4 1.4 70 34-103 886-956 (968)
47 2bay_A PRE-mRNA splicing facto 98.2 8E-07 2.7E-11 68.8 4.3 56 100-160 3-58 (61)
48 3htk_C E3 SUMO-protein ligase 98.1 5.2E-07 1.8E-11 88.9 -0.1 57 38-94 180-241 (267)
49 1g25_A CDK-activating kinase a 98.0 5.3E-06 1.8E-10 64.1 4.1 58 99-158 2-61 (65)
50 2ecv_A Tripartite motif-contai 97.7 8.2E-05 2.8E-09 59.7 7.5 59 38-96 18-82 (85)
51 2djb_A Polycomb group ring fin 97.7 7.8E-05 2.7E-09 58.6 7.1 54 38-91 14-68 (72)
52 2ecw_A Tripartite motif-contai 97.7 9E-05 3.1E-09 59.4 7.5 59 38-96 18-82 (85)
53 3ztg_A E3 ubiquitin-protein li 97.7 3.9E-05 1.3E-09 63.1 5.4 46 38-83 12-60 (92)
54 2xeu_A Ring finger protein 4; 97.7 2.9E-05 1E-09 59.1 4.0 58 99-158 2-62 (64)
55 3lrq_A E3 ubiquitin-protein li 97.6 3E-05 1E-09 65.3 4.1 56 39-94 22-79 (100)
56 3ng2_A RNF4, snurf, ring finge 97.6 3.6E-05 1.2E-09 60.0 4.2 56 38-93 9-71 (71)
57 2xeu_A Ring finger protein 4; 97.6 3.8E-05 1.3E-09 58.5 3.2 54 40-93 4-64 (64)
58 3hct_A TNF receptor-associated 97.5 4.8E-05 1.6E-09 65.9 4.0 67 38-104 17-86 (118)
59 3ng2_A RNF4, snurf, ring finge 97.5 4.1E-05 1.4E-09 59.7 3.0 60 97-158 7-69 (71)
60 2csy_A Zinc finger protein 183 97.5 0.00018 6.3E-09 57.7 7.0 46 39-84 15-60 (81)
61 1jm7_A BRCA1, breast cancer ty 97.5 8.2E-05 2.8E-09 63.2 4.8 55 39-93 21-78 (112)
62 1z6u_A NP95-like ring finger p 97.5 7.6E-05 2.6E-09 67.7 4.8 53 39-91 78-132 (150)
63 2y43_A E3 ubiquitin-protein li 97.5 4.9E-05 1.7E-09 63.6 3.2 55 39-93 22-77 (99)
64 3fl2_A E3 ubiquitin-protein li 97.5 9E-05 3.1E-09 64.6 4.7 52 39-90 52-105 (124)
65 2ecy_A TNF receptor-associated 97.5 0.00013 4.4E-09 56.3 4.9 51 38-88 14-65 (66)
66 2djb_A Polycomb group ring fin 97.5 8.8E-05 3E-09 58.4 4.0 55 98-157 13-67 (72)
67 2yur_A Retinoblastoma-binding 97.5 0.0003 1E-08 55.7 7.2 48 38-85 14-64 (74)
68 2kr4_A Ubiquitin conjugation f 97.4 0.00012 4.1E-09 59.9 4.5 54 98-157 12-65 (85)
69 2ct2_A Tripartite motif protei 97.4 7.2E-05 2.5E-09 60.7 3.1 59 98-158 13-74 (88)
70 1t1h_A Gspef-atpub14, armadill 97.4 0.00022 7.4E-09 56.7 5.6 54 98-157 6-60 (78)
71 2ysl_A Tripartite motif-contai 97.3 0.00039 1.3E-08 54.3 6.6 54 96-155 16-72 (73)
72 2ysl_A Tripartite motif-contai 97.3 0.00034 1.2E-08 54.7 6.1 51 38-88 19-72 (73)
73 2kre_A Ubiquitin conjugation f 97.3 0.00023 8E-09 60.2 5.3 54 98-157 27-80 (100)
74 2egp_A Tripartite motif-contai 97.3 3.7E-05 1.3E-09 61.2 0.2 59 38-96 11-76 (79)
75 1wgm_A Ubiquitin conjugation f 97.3 0.00027 9.4E-09 59.5 5.4 54 98-157 20-74 (98)
76 2ecy_A TNF receptor-associated 97.3 0.00025 8.4E-09 54.7 4.6 55 95-155 10-65 (66)
77 2ect_A Ring finger protein 126 97.3 0.00014 4.8E-09 57.9 3.2 58 98-158 13-70 (78)
78 2d8t_A Dactylidin, ring finger 97.3 9E-05 3.1E-09 58.1 2.0 54 37-90 13-66 (71)
79 2ct2_A Tripartite motif protei 97.3 0.00041 1.4E-08 56.1 5.9 53 38-90 14-73 (88)
80 4ayc_A E3 ubiquitin-protein li 97.2 0.00016 5.5E-09 64.3 3.7 33 40-72 54-86 (138)
81 1rmd_A RAG1; V(D)J recombinati 97.2 0.00025 8.6E-09 60.9 4.7 81 39-133 23-107 (116)
82 3hcs_A TNF receptor-associated 97.2 0.00018 6.1E-09 66.0 3.8 67 38-104 17-86 (170)
83 2yu4_A E3 SUMO-protein ligase 97.2 0.00035 1.2E-08 58.2 5.0 57 98-157 5-68 (94)
84 2ckl_A Polycomb group ring fin 97.1 0.00023 8E-09 60.4 3.2 39 39-77 15-54 (108)
85 2ckl_B Ubiquitin ligase protei 97.1 0.0003 1E-08 64.3 4.2 34 39-72 54-88 (165)
86 2f42_A STIP1 homology and U-bo 97.1 0.0004 1.4E-08 65.0 4.8 55 98-157 104-158 (179)
87 2ea6_A Ring finger protein 4; 97.1 0.0003 1E-08 54.2 3.3 53 98-152 13-68 (69)
88 2ecm_A Ring finger and CHY zin 97.1 0.00031 1E-08 51.8 3.1 52 98-151 3-54 (55)
89 2ecw_A Tripartite motif-contai 97.0 0.00085 2.9E-08 53.6 5.8 56 98-159 17-78 (85)
90 3htk_C E3 SUMO-protein ligase 97.0 0.0012 4.2E-08 65.0 7.4 91 60-157 143-237 (267)
91 2csy_A Zinc finger protein 183 96.9 0.0012 4.1E-08 52.9 5.8 48 98-151 13-60 (81)
92 2y43_A E3 ubiquitin-protein li 96.9 0.00063 2.2E-08 56.7 4.2 55 98-157 20-74 (99)
93 1x4j_A Ring finger protein 38; 96.9 0.0014 4.7E-08 51.7 6.0 65 85-152 6-72 (75)
94 2d8t_A Dactylidin, ring finger 96.9 0.0004 1.4E-08 54.4 2.8 54 98-157 13-66 (71)
95 2ckl_B Ubiquitin ligase protei 96.9 0.00064 2.2E-08 62.0 4.6 53 98-155 52-105 (165)
96 2ea6_A Ring finger protein 4; 96.9 0.0011 3.8E-08 50.9 5.3 48 38-85 14-68 (69)
97 4ap4_A E3 ubiquitin ligase RNF 96.9 0.00077 2.6E-08 58.4 4.8 61 98-160 5-68 (133)
98 1g25_A CDK-activating kinase a 96.9 0.00067 2.3E-08 52.0 3.8 55 40-94 4-64 (65)
99 1jm7_B BARD1, BRCA1-associated 96.9 0.00026 8.9E-09 61.1 1.5 51 39-91 22-73 (117)
100 2ysj_A Tripartite motif-contai 96.9 0.0011 3.6E-08 50.5 4.7 35 38-72 19-53 (63)
101 2ect_A Ring finger protein 126 96.9 0.0019 6.6E-08 51.1 6.5 54 38-91 14-70 (78)
102 3hct_A TNF receptor-associated 96.8 0.0011 3.7E-08 57.2 4.9 60 92-157 10-70 (118)
103 2ecn_A Ring finger protein 141 96.8 0.00063 2.2E-08 52.8 2.8 53 98-157 13-65 (70)
104 2ecv_A Tripartite motif-contai 96.7 0.00096 3.3E-08 53.3 3.5 54 98-157 17-76 (85)
105 3lrq_A E3 ubiquitin-protein li 96.7 0.0011 3.7E-08 55.7 4.0 54 99-157 21-75 (100)
106 2ckl_A Polycomb group ring fin 96.7 0.002 6.9E-08 54.5 5.6 51 98-153 13-63 (108)
107 2ep4_A Ring finger protein 24; 96.7 0.0022 7.5E-08 50.3 5.4 52 98-152 13-64 (74)
108 1chc_A Equine herpes virus-1 r 96.7 0.003 1E-07 48.6 5.8 46 39-84 5-51 (68)
109 1iym_A EL5; ring-H2 finger, ub 96.6 0.00099 3.4E-08 49.1 2.9 52 98-151 3-54 (55)
110 2c2l_A CHIP, carboxy terminus 96.6 0.00099 3.4E-08 65.0 3.6 55 98-157 206-260 (281)
111 2egp_A Tripartite motif-contai 96.6 0.00067 2.3E-08 53.7 1.8 53 98-156 10-69 (79)
112 2yur_A Retinoblastoma-binding 96.6 0.0011 3.9E-08 52.3 3.0 54 98-156 13-68 (74)
113 2kiz_A E3 ubiquitin-protein li 96.6 0.0026 8.7E-08 49.2 4.9 52 98-152 12-63 (69)
114 2ecm_A Ring finger and CHY zin 96.5 0.004 1.4E-07 45.7 5.4 45 39-83 5-53 (55)
115 2l0b_A E3 ubiquitin-protein li 96.5 0.0033 1.1E-07 51.7 5.4 52 98-152 38-89 (91)
116 3ztg_A E3 ubiquitin-protein li 96.4 0.0032 1.1E-07 51.5 4.8 51 98-151 11-61 (92)
117 2ecj_A Tripartite motif-contai 96.4 0.0024 8.4E-08 47.3 3.7 34 38-71 14-47 (58)
118 4ayc_A E3 ubiquitin-protein li 96.3 0.0026 9E-08 56.4 4.3 48 99-152 52-99 (138)
119 2y1n_A E3 ubiquitin-protein li 96.3 0.0019 6.5E-08 67.2 3.7 53 39-91 332-385 (389)
120 1jm7_A BRCA1, breast cancer ty 96.3 0.0015 5.2E-08 55.2 2.1 53 99-157 20-75 (112)
121 3knv_A TNF receptor-associated 96.1 0.0014 4.8E-08 58.7 1.4 46 38-83 30-76 (141)
122 3fl2_A E3 ubiquitin-protein li 96.1 0.0038 1.3E-07 54.1 3.7 50 98-152 50-99 (124)
123 1rmd_A RAG1; V(D)J recombinati 96.0 0.0027 9.1E-08 54.4 2.6 53 98-156 21-74 (116)
124 1chc_A Equine herpes virus-1 r 96.0 0.0081 2.8E-07 46.0 5.1 48 99-151 4-51 (68)
125 1x4j_A Ring finger protein 38; 96.0 0.0061 2.1E-07 47.9 4.3 47 38-84 22-71 (75)
126 2ysj_A Tripartite motif-contai 95.9 0.0075 2.6E-07 45.6 4.3 37 96-136 16-52 (63)
127 3hcs_A TNF receptor-associated 95.9 0.0069 2.4E-07 55.3 4.8 61 91-157 9-70 (170)
128 2kiz_A E3 ubiquitin-protein li 95.9 0.019 6.5E-07 44.1 6.6 47 38-84 13-62 (69)
129 1v87_A Deltex protein 2; ring- 95.8 0.0085 2.9E-07 50.9 4.9 60 99-162 24-102 (114)
130 1z6u_A NP95-like ring finger p 95.8 0.0073 2.5E-07 54.5 4.5 51 98-154 76-127 (150)
131 2ep4_A Ring finger protein 24; 95.8 0.0088 3E-07 46.7 4.3 46 38-83 14-62 (74)
132 1iym_A EL5; ring-H2 finger, ub 95.7 0.008 2.7E-07 44.1 3.7 45 39-83 5-53 (55)
133 2l0b_A E3 ubiquitin-protein li 95.7 0.0066 2.2E-07 49.9 3.5 45 39-83 40-87 (91)
134 2y1n_A E3 ubiquitin-protein li 95.6 0.0063 2.1E-07 63.3 3.7 54 100-159 332-386 (389)
135 3l11_A E3 ubiquitin-protein li 95.6 0.0027 9.2E-08 54.3 0.6 47 39-111 15-61 (115)
136 1v87_A Deltex protein 2; ring- 95.4 0.011 3.6E-07 50.3 4.0 35 38-72 24-76 (114)
137 1jm7_B BARD1, BRCA1-associated 95.4 0.0026 9E-08 54.7 -0.0 50 99-155 21-70 (117)
138 2ecn_A Ring finger protein 141 95.3 0.0029 9.9E-08 49.0 0.0 48 38-86 14-61 (70)
139 2vje_B MDM4 protein; proto-onc 95.3 0.019 6.4E-07 44.0 4.6 54 99-158 6-60 (63)
140 2ecl_A Ring-box protein 2; RNF 95.2 0.0085 2.9E-07 48.2 2.6 49 38-86 14-77 (81)
141 2ecl_A Ring-box protein 2; RNF 95.1 0.0099 3.4E-07 47.8 2.6 52 101-154 16-78 (81)
142 2vje_A E3 ubiquitin-protein li 95.0 0.03 1E-06 43.0 5.0 55 99-159 7-62 (64)
143 2ecj_A Tripartite motif-contai 95.0 0.016 5.5E-07 42.7 3.3 33 98-134 13-45 (58)
144 1e4u_A Transcriptional repress 94.8 0.014 4.9E-07 46.8 2.6 59 98-157 9-67 (78)
145 3l11_A E3 ubiquitin-protein li 94.6 0.011 3.6E-07 50.5 1.5 48 98-151 13-61 (115)
146 3dpl_R Ring-box protein 1; ubi 94.6 0.022 7.4E-07 48.5 3.4 46 39-84 37-100 (106)
147 3knv_A TNF receptor-associated 94.3 0.02 6.9E-07 51.1 2.9 54 95-153 26-79 (141)
148 2yho_A E3 ubiquitin-protein li 94.2 0.038 1.3E-06 44.3 3.9 60 100-171 18-78 (79)
149 2ecg_A Baculoviral IAP repeat- 94.1 0.018 6.2E-07 45.4 1.8 46 98-153 23-69 (75)
150 1bor_A Transcription factor PM 94.0 0.025 8.5E-07 42.1 2.3 44 38-84 5-48 (56)
151 4ic3_A E3 ubiquitin-protein li 93.8 0.018 6.1E-07 45.4 1.2 31 39-69 24-55 (74)
152 3kop_A Uncharacterized protein 92.7 0.71 2.4E-05 42.8 10.2 111 349-480 22-166 (188)
153 1wim_A KIAA0161 protein; ring 92.6 0.051 1.8E-06 44.6 2.4 36 99-135 4-39 (94)
154 2nnz_A Hypothetical protein; b 92.5 0.24 8.2E-06 44.9 6.8 102 349-479 30-142 (153)
155 1e4u_A Transcriptional repress 92.5 0.082 2.8E-06 42.3 3.3 52 38-89 10-66 (78)
156 4a0k_B E3 ubiquitin-protein li 92.4 0.024 8.3E-07 49.2 0.0 46 40-85 49-112 (117)
157 2ea5_A Cell growth regulator w 92.3 0.088 3E-06 40.9 3.2 52 98-161 13-65 (68)
158 2vje_A E3 ubiquitin-protein li 92.3 0.12 4.2E-06 39.4 4.0 46 38-83 7-55 (64)
159 4ic3_A E3 ubiquitin-protein li 91.9 0.053 1.8E-06 42.6 1.5 44 99-152 23-67 (74)
160 1bor_A Transcription factor PM 91.8 0.033 1.1E-06 41.4 0.1 46 98-152 4-49 (56)
161 3vk6_A E3 ubiquitin-protein li 91.6 0.16 5.5E-06 42.7 4.1 52 101-157 2-54 (101)
162 3t6p_A Baculoviral IAP repeat- 91.4 0.062 2.1E-06 55.0 1.7 31 39-69 295-326 (345)
163 2vje_B MDM4 protein; proto-onc 91.2 0.17 5.8E-06 38.5 3.6 45 39-83 7-54 (63)
164 3dpl_R Ring-box protein 1; ubi 90.8 0.16 5.4E-06 43.1 3.4 68 82-151 19-100 (106)
165 2d8s_A Cellular modulator of i 90.5 0.7 2.4E-05 37.0 6.9 49 38-86 14-71 (80)
166 2ecg_A Baculoviral IAP repeat- 89.8 0.3 1E-05 38.2 4.1 29 39-67 25-54 (75)
167 3t6p_A Baculoviral IAP repeat- 86.1 0.22 7.4E-06 51.0 1.4 44 99-152 294-338 (345)
168 3i2d_A E3 SUMO-protein ligase 84.0 0.68 2.3E-05 47.6 3.9 49 40-113 250-301 (371)
169 2kkx_A Uncharacterized protein 83.5 1.1 3.7E-05 37.5 4.2 53 38-90 26-84 (102)
170 1wim_A KIAA0161 protein; ring 81.6 0.96 3.3E-05 36.8 3.2 34 39-72 5-41 (94)
171 3i2d_A E3 SUMO-protein ligase 81.5 1.1 3.9E-05 46.0 4.4 54 101-157 250-305 (371)
172 4a0k_B E3 ubiquitin-protein li 80.1 0.35 1.2E-05 41.8 0.0 51 99-151 47-111 (117)
173 4fo9_A E3 SUMO-protein ligase 79.0 1.4 4.8E-05 45.2 4.1 48 40-112 216-266 (360)
174 4fo9_A E3 SUMO-protein ligase 76.5 2.1 7.2E-05 43.8 4.5 54 101-157 216-271 (360)
175 2xjy_A Rhombotin-2; oncoprotei 76.2 3.4 0.00011 35.3 5.2 91 39-134 29-126 (131)
176 2ea5_A Cell growth regulator w 75.7 4.5 0.00015 31.0 5.3 31 37-67 13-44 (68)
177 2k5c_A Uncharacterized protein 74.8 0.25 8.5E-06 39.9 -2.3 39 75-113 10-64 (95)
178 2ct0_A Non-SMC element 1 homol 74.5 3.1 0.0001 32.9 4.1 49 99-152 14-64 (74)
179 2yho_A E3 ubiquitin-protein li 72.0 1.6 5.4E-05 34.6 1.8 31 39-69 18-49 (79)
180 2d8s_A Cellular modulator of i 68.5 4.1 0.00014 32.4 3.6 53 98-154 13-72 (80)
181 2jtn_A LIM domain-binding prot 68.2 11 0.00036 34.3 6.9 89 39-134 87-180 (182)
182 2rgt_A Fusion of LIM/homeobox 68.2 15 0.00051 32.8 7.8 91 39-135 33-127 (169)
183 1zx8_A Hypothetical protein TM 65.9 32 0.0011 30.2 9.1 101 349-479 13-123 (136)
184 3m62_A Ubiquitin conjugation f 59.4 7.3 0.00025 44.8 4.7 54 98-157 889-943 (968)
185 3mjh_B Early endosome antigen 58.1 3.2 0.00011 28.0 0.9 14 100-113 5-18 (34)
186 1rut_X Flinc4, fusion protein 56.7 3.3 0.00011 38.0 1.1 91 39-134 32-129 (188)
187 3vk6_A E3 ubiquitin-protein li 55.3 13 0.00045 31.1 4.4 65 40-110 2-71 (101)
188 2ct0_A Non-SMC element 1 homol 52.0 19 0.00064 28.3 4.6 47 38-84 14-63 (74)
189 1b8t_A Protein (CRP1); LIM dom 50.1 54 0.0019 29.7 8.3 102 38-149 33-184 (192)
190 1m3v_A FLIN4, fusion of the LI 43.5 16 0.00055 30.8 3.3 57 100-160 32-89 (122)
191 6rxn_A Rubredoxin; electron tr 41.9 9.9 0.00034 27.3 1.4 12 98-109 28-39 (46)
192 2jyp_A Aragonite protein AP7; 40.9 12 0.00041 24.5 1.5 16 32-48 3-18 (36)
193 3k1l_B Fancl; UBC, ring, RWD, 40.1 10 0.00034 38.8 1.6 33 41-73 310-350 (381)
194 2lvu_A Zinc finger and BTB dom 39.0 9.2 0.00032 21.8 0.0 17 100-116 2-18 (26)
195 3nw0_A Non-structural maintena 31.4 31 0.0011 33.0 3.5 55 101-161 181-237 (238)
196 1vd4_A Transcription initiatio 31.4 17 0.00059 26.3 1.3 42 98-154 12-53 (62)
197 2lvt_A Zinc finger and BTB dom 34.4 12 0.00042 21.8 0.0 17 100-116 2-18 (29)
198 2m0f_A Zinc finger and BTB dom 28.3 20 0.00069 20.5 1.0 14 100-113 2-15 (29)
199 1vyx_A ORF K3, K3RING; zinc-bi 26.9 68 0.0023 23.7 4.0 35 39-73 6-45 (60)
200 1s24_A Rubredoxin 2; electron 26.5 17 0.00058 29.6 0.5 19 138-158 66-84 (87)
201 2lvr_A Zinc finger and BTB dom 31.8 14 0.00049 21.5 0.0 17 100-116 3-19 (30)
202 2xqn_T Testin, TESS; metal-bin 25.2 1.3E+02 0.0043 25.0 6.0 87 39-131 30-121 (126)
203 2m0e_A Zinc finger and BTB dom 25.1 21 0.00071 20.3 0.7 15 100-114 2-16 (29)
204 1rik_A E6APC1 peptide; E6-bind 24.2 22 0.00077 20.4 0.7 15 100-114 2-16 (29)
205 1ard_A Yeast transcription fac 24.2 25 0.00086 20.1 0.9 14 100-113 2-15 (29)
206 2khf_A PLNJ; anti-microbial, b 23.8 27 0.00093 21.3 0.9 15 374-388 4-18 (26)
207 1znf_A 31ST zinc finger from X 23.5 27 0.00093 19.6 1.0 13 101-113 2-14 (27)
208 2kvh_A Zinc finger and BTB dom 23.2 28 0.00094 19.8 1.0 14 100-113 3-16 (27)
209 2kvf_A Zinc finger and BTB dom 23.1 27 0.00094 19.9 0.9 14 100-113 3-16 (28)
210 2kvg_A Zinc finger and BTB dom 23.1 25 0.00085 20.2 0.7 14 100-113 3-16 (27)
211 4esj_A Type-2 restriction enzy 21.9 57 0.002 31.4 3.3 40 67-113 28-69 (257)
212 1klr_A Zinc finger Y-chromosom 21.9 25 0.00086 20.1 0.6 15 100-114 2-16 (30)
213 2xqn_T Testin, TESS; metal-bin 21.8 2.2E+02 0.0074 23.4 6.8 48 100-154 30-77 (126)
214 2els_A Zinc finger protein 406 20.9 31 0.0011 21.2 0.9 15 99-113 8-22 (36)
215 2elx_A Zinc finger protein 406 20.8 32 0.0011 20.8 1.0 15 99-113 6-20 (35)
216 2rgt_A Fusion of LIM/homeobox 20.3 1.4E+02 0.0048 26.2 5.5 50 100-157 33-82 (169)
217 1p7a_A BF3, BKLF, kruppel-like 20.2 33 0.0011 21.2 0.9 15 99-113 10-24 (37)
218 2elr_A Zinc finger protein 406 20.2 33 0.0011 20.9 0.9 16 98-113 7-22 (36)
No 1
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=7.1e-49 Score=364.23 Aligned_cols=156 Identities=44% Similarity=0.721 Sum_probs=150.6
Q ss_pred ceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccC
Q 010602 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (506)
Q Consensus 348 ~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 427 (506)
...|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++||||||||+++|.|++++||.+|+||+...+
T Consensus 5 ~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 84 (160)
T 2fu0_A 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHL 84 (160)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTB
T ss_pred CCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCCccccccCCc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999977789
Q ss_pred CCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeecc
Q 010602 428 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFRN 503 (506)
Q Consensus 428 ~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~~ 503 (506)
+|+++|+|||||++|++++|||||++.++||||++|+|||+|++|||||++|++++++.+++|.++|+|.+++|.+
T Consensus 85 ~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~~ 160 (160)
T 2fu0_A 85 NHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160 (160)
T ss_dssp CSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred ccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999889999999999999864
No 2
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=1.8e-48 Score=371.92 Aligned_cols=161 Identities=60% Similarity=1.084 Sum_probs=155.5
Q ss_pred cCCCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccc
Q 010602 343 KNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDE 422 (506)
Q Consensus 343 ~~~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE 422 (506)
+.|+...+|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.|++++||.+|++|
T Consensus 14 ~~~~~~~~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~f~dE 93 (197)
T 1zkc_A 14 LVPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDE 93 (197)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCC
T ss_pred CCCCCCcEEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCccccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCC-CCcccceEEEeeee
Q 010602 423 VNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLVSLCVKYPSF 501 (506)
Q Consensus 423 ~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~-~rP~~~I~I~s~~v 501 (506)
+++.+.|+++|+|||||.||++|+|||||++++++|||++|+|||+|++|||||++|++++++.. ++|.++|+|.++.+
T Consensus 94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v 173 (197)
T 1zkc_A 94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173 (197)
T ss_dssp CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred cCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999986 99999999999987
Q ss_pred cc
Q 010602 502 RN 503 (506)
Q Consensus 502 ~~ 503 (506)
..
T Consensus 174 ~~ 175 (197)
T 1zkc_A 174 FV 175 (197)
T ss_dssp EE
T ss_pred Ec
Confidence 53
No 3
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=1.8e-48 Score=363.54 Aligned_cols=156 Identities=45% Similarity=0.797 Sum_probs=151.2
Q ss_pred cceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccccccc
Q 010602 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (506)
Q Consensus 347 ~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 426 (506)
...+|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.|++++||..|++|+.+.
T Consensus 10 ~~~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 89 (166)
T 2x7k_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPD 89 (166)
T ss_dssp CCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTT
T ss_pred CCCEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCccccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998788
Q ss_pred CCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 427 l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
++|+++|+|||||+|||+|+|||||++++++|||++|+|||+|++|||||++|++++++..++|.++|+|.+++|.
T Consensus 90 l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~ 165 (166)
T 2x7k_A 90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165 (166)
T ss_dssp SCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred cCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999999874
No 4
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=3e-48 Score=365.08 Aligned_cols=157 Identities=43% Similarity=0.735 Sum_probs=151.1
Q ss_pred CcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccc
Q 010602 346 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNS 425 (506)
Q Consensus 346 k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 425 (506)
.....|.|.|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+.++|.|++++||.+|+||+..
T Consensus 19 ~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 98 (176)
T 2a2n_A 19 RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHS 98 (176)
T ss_dssp CCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCT
T ss_pred CCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCCCCCcccCCcccccccc
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred cCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCC-CCCCcccceEEEeeeec
Q 010602 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVD-ENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 426 ~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~-~~~rP~~~I~I~s~~v~ 502 (506)
.++|+++|+|||||.|||+++|||||++.++||||++|+|||+|++|||||++|++++++ .+++|.++|+|.+++|.
T Consensus 99 ~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v~ 176 (176)
T 2a2n_A 99 TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176 (176)
T ss_dssp TCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEEC
T ss_pred ccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEEC
Confidence 899999999999999999999999999999999999999999999999999999999998 68999999999999874
No 5
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=3.3e-48 Score=360.29 Aligned_cols=154 Identities=57% Similarity=1.011 Sum_probs=149.5
Q ss_pred EEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCC
Q 010602 350 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 429 (506)
Q Consensus 350 ~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h 429 (506)
.|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.||+++||.+|++|+.+.++|
T Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h 81 (161)
T 2ok3_A 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_dssp EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCS
T ss_pred EEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccCCccccccCcCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998778999
Q ss_pred CCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCC-CCcccceEEEeeeecc
Q 010602 430 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLVSLCVKYPSFRN 503 (506)
Q Consensus 430 ~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~-~rP~~~I~I~s~~v~~ 503 (506)
+++|+|||||++|++++|||||++++++|||++|+|||+|++|||||++|++++++.. ++|.++|+|.++.|..
T Consensus 82 ~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~ 156 (161)
T 2ok3_A 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_dssp CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred CCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999986 9999999999998864
No 6
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=7.6e-48 Score=369.70 Aligned_cols=159 Identities=50% Similarity=0.866 Sum_probs=146.1
Q ss_pred CCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecC-----CCCCCCCCCCccc----
Q 010602 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGG-----DPTGTGRGGESIW---- 415 (506)
Q Consensus 345 ~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgG-----d~~~~g~gg~si~---- 415 (506)
++++++|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||| ||+++|.||+++|
T Consensus 3 ~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~ 82 (201)
T 3bo7_A 3 LKKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISG 82 (201)
T ss_dssp --CCEEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCS
T ss_pred CCCceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCcccccccc
Confidence 4778999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ---CCCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCccc
Q 010602 416 ---GKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLV 492 (506)
Q Consensus 416 ---g~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~ 492 (506)
|.+|++|+++.+.|+++|+|||||+|||+++|||||++++++|||++|+|||+|++|||||++|++++++.+++|.+
T Consensus 83 ~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~ 162 (201)
T 3bo7_A 83 FPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLK 162 (201)
T ss_dssp STTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSS
T ss_pred ccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCC
Confidence 89999998889999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred ceEEEeeeecc
Q 010602 493 SLCVKYPSFRN 503 (506)
Q Consensus 493 ~I~I~s~~v~~ 503 (506)
+|+|.++.+..
T Consensus 163 ~i~I~~~~v~~ 173 (201)
T 3bo7_A 163 PPKVEEIIVFK 173 (201)
T ss_dssp CCBEEEEEEEE
T ss_pred CeEEEEEEEEc
Confidence 99999998753
No 7
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=8.4e-48 Score=367.30 Aligned_cols=157 Identities=45% Similarity=0.833 Sum_probs=151.3
Q ss_pred cceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccccccc
Q 010602 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (506)
Q Consensus 347 ~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 426 (506)
...+|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.||+++||.+|++|+.+.
T Consensus 37 ~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 116 (196)
T 2b71_A 37 ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKE 116 (196)
T ss_dssp HSCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTT
T ss_pred CCcEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeecc
Q 010602 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFRN 503 (506)
Q Consensus 427 l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~~ 503 (506)
++|+++|+|||||.|||+++|||||+++++||||++|+|||+|++||+||++|++++++.+++|.++|+|.++.|..
T Consensus 117 l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~ 193 (196)
T 2b71_A 117 LKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV 193 (196)
T ss_dssp CCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC--
T ss_pred cCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999998753
No 8
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=9.1e-48 Score=364.47 Aligned_cols=160 Identities=43% Similarity=0.815 Sum_probs=152.3
Q ss_pred CCCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccc
Q 010602 344 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEV 423 (506)
Q Consensus 344 ~~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~ 423 (506)
......+|.|.|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.||+++||.+|++|+
T Consensus 12 ~~~~~~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~ 91 (185)
T 2poe_A 12 ENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEI 91 (185)
T ss_dssp ---CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSCBCCCC
T ss_pred cCCCceEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCccEEEEecCC----CCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEee
Q 010602 424 NSKLLHSGRGVVSMANSG----PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYP 499 (506)
Q Consensus 424 ~~~l~h~~~G~lsman~g----~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~ 499 (506)
.+.++|+++|+|||||++ |++|+|||||+++++||||++|+|||+|++||+||++|++++++.+++|.++|+|.++
T Consensus 92 ~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~ 171 (185)
T 2poe_A 92 YPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171 (185)
T ss_dssp CTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEE
T ss_pred cCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEE
Confidence 789999999999999999 9999999999999999999999999999999999999999999988999999999999
Q ss_pred eecc
Q 010602 500 SFRN 503 (506)
Q Consensus 500 ~v~~ 503 (506)
.+..
T Consensus 172 ~i~~ 175 (185)
T 2poe_A 172 VIHS 175 (185)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8763
No 9
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=5e-47 Score=363.37 Aligned_cols=158 Identities=44% Similarity=0.786 Sum_probs=152.4
Q ss_pred cceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccccccc
Q 010602 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (506)
Q Consensus 347 ~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 426 (506)
...+|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+++++.+++++||.+|++|+.+.
T Consensus 10 ~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~f~dE~~~~ 89 (203)
T 2k7n_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPD 89 (203)
T ss_dssp CCSEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSCBCCCCCCS
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCccccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998788
Q ss_pred CCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeeccC
Q 010602 427 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFRNR 504 (506)
Q Consensus 427 l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~~~ 504 (506)
++|+++|+|||||.+||+|+|||||++.+++|||++|+|||+|++|||||++|++++++..++|.++|+|.++.|.+.
T Consensus 90 l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~ 167 (203)
T 2k7n_A 90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGG 167 (203)
T ss_dssp SCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCC
T ss_pred ccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999998899999999999998653
No 10
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=2.6e-46 Score=355.91 Aligned_cols=155 Identities=43% Similarity=0.742 Sum_probs=147.1
Q ss_pred CCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHH---------------hccccCCceEEEeecCceEecCCCCCCCC
Q 010602 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLC---------------ERGYYNGVAFHRSIRNFMIQGGDPTGTGR 409 (506)
Q Consensus 345 ~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~---------------~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~ 409 (506)
|....+|.|.|+.|+|+||||++.||+||+||++|| +.+||+|+.||||+++|||||||+.++|.
T Consensus 20 ~~~~~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~ 99 (191)
T 1w74_A 20 PLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGR 99 (191)
T ss_dssp -CCSEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSS
T ss_pred CCCCeEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCC
Confidence 355788999999999999999999999999999999 45899999999999999999999999888
Q ss_pred CCCcccCCCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEc--CHHHHHHhhcCCCCCC
Q 010602 410 GGESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG--GLTTLAAMEKVPVDEN 487 (506)
Q Consensus 410 gg~si~g~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~--G~dvL~~I~~~~t~~~ 487 (506)
|+ ||..|+||+++.++|+++|+|||||+|||+|+||||||+.++||||++|+|||+|++ ||+||++|++++++.+
T Consensus 100 gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~ 176 (191)
T 1w74_A 100 GG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN 176 (191)
T ss_dssp CC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTT
T ss_pred CC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCC
Confidence 88 599999998889999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred CCcccceEEEeeeec
Q 010602 488 DRPLVSLCVKYPSFR 502 (506)
Q Consensus 488 ~rP~~~I~I~s~~v~ 502 (506)
++|.++|+|.++.|.
T Consensus 177 ~~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 177 DRPTDPVVIESITIS 191 (191)
T ss_dssp SCBSSCCEEEEEEEC
T ss_pred CCcCCCeEEEEEEEC
Confidence 999999999999873
No 11
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=9.4e-46 Score=350.55 Aligned_cols=158 Identities=48% Similarity=0.846 Sum_probs=150.1
Q ss_pred CCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccccc
Q 010602 345 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN 424 (506)
Q Consensus 345 ~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 424 (506)
|+....|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.||+++||.+|++|+.
T Consensus 21 ~~~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 100 (185)
T 2hq6_A 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFH 100 (185)
T ss_dssp CCCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCB
T ss_pred CCCCCEEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCccccccc
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHH--HHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTT--LAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 425 ~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dv--L~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
..++|+++|+|||||.+|++++|||||+++++++||++|+|||+|+ ||+| +++|+.++++.+++|.++|+|.++.+.
T Consensus 101 ~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~ 179 (185)
T 2hq6_A 101 SRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179 (185)
T ss_dssp TTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEE
T ss_pred cCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEe
Confidence 7899999999999999999999999999999999999999999999 8876 478999999989999999999999875
Q ss_pred c
Q 010602 503 N 503 (506)
Q Consensus 503 ~ 503 (506)
+
T Consensus 180 ~ 180 (185)
T 2hq6_A 180 F 180 (185)
T ss_dssp E
T ss_pred C
Confidence 3
No 12
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=6.8e-45 Score=343.32 Aligned_cols=153 Identities=39% Similarity=0.692 Sum_probs=143.3
Q ss_pred ceEEEEE---ecCeeeEEEEcCCCChhHHHHHHHHHh-----------ccccCCceEEEeecCceEecCCCC-CCCCCCC
Q 010602 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE-----------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGGE 412 (506)
Q Consensus 348 ~~~v~l~---T~~G~I~ieL~~d~aP~t~~NF~~L~~-----------~g~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~ 412 (506)
..|..+. |+.|+|+||||++.||+||+||++||+ .+||+|+.||||+++|||||||++ ++|.|++
T Consensus 11 ~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~ 90 (179)
T 2wfi_A 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGE 90 (179)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCC
T ss_pred eEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCCC
Confidence 4444443 789999999999999999999999996 579999999999999999999997 8899999
Q ss_pred cccCCCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCccc
Q 010602 413 SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLV 492 (506)
Q Consensus 413 si~g~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~ 492 (506)
++||..|+|| .+.++|+.+|+|||||.+||+|+||||||+.++||||++|+|||+|++|||||++|++++++..++|.+
T Consensus 91 si~g~~f~dE-~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~ 169 (179)
T 2wfi_A 91 SIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFA 169 (179)
T ss_dssp CTTSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSS
T ss_pred cccCCccccc-ccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCC
Confidence 9999999999 578999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred ceEEEeeee
Q 010602 493 SLCVKYPSF 501 (506)
Q Consensus 493 ~I~I~s~~v 501 (506)
+|+|.++..
T Consensus 170 ~v~I~~~G~ 178 (179)
T 2wfi_A 170 EVRILSCGE 178 (179)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEeCee
Confidence 999998754
No 13
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=4e-45 Score=344.34 Aligned_cols=146 Identities=45% Similarity=0.795 Sum_probs=140.7
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhccc--------cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccccc
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNS 425 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~--------Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~ 425 (506)
|+.|+|+||||++.||+||+||++||+++| |+|+.||||+++|||||||++ ++|.|++++||.+|+|| ..
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE-~~ 100 (177)
T 1mzw_A 22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADE-NF 100 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCC-CC
T ss_pred eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCcccCc-cc
Confidence 579999999999999999999999999998 999999999999999999996 88999999999999999 57
Q ss_pred cCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 426 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 426 ~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
.++|+.+|+|||||.+||+|+|||||++.++||||++|+|||+|++|||||++|++++++.+++|.++|+|.++.+
T Consensus 101 ~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~cG~ 176 (177)
T 1mzw_A 101 KLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176 (177)
T ss_dssp CSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEE
T ss_pred ccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEecee
Confidence 8999999999999999999999999999999999999999999999999999999999988999999999998764
No 14
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=7.2e-45 Score=342.63 Aligned_cols=146 Identities=49% Similarity=0.799 Sum_probs=140.0
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhc--------c---ccCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCccc
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCER--------G---YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE 422 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~--------g---~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE 422 (506)
|+.|+|+||||++.||+||+||++||++ | ||+|+.||||+++|||||||++ ++|.|++++||..|+||
T Consensus 18 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE 97 (177)
T 1a58_A 18 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE 97 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCCCTTSSCBCCC
T ss_pred EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCc
Confidence 6899999999999999999999999985 4 9999999999999999999997 88999999999999999
Q ss_pred ccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 423 VNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 423 ~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
...++|+++|+|||||++||+|+|||||++.++||||++|+|||+|++|||||++|++++++..++|.++|+|.++.+
T Consensus 98 -~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G~ 175 (177)
T 1a58_A 98 -EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGE 175 (177)
T ss_dssp -CCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEE
T ss_pred -ccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeEE
Confidence 568999999999999999999999999999999999999999999999999999999999998899999999998865
No 15
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=7e-45 Score=340.83 Aligned_cols=145 Identities=43% Similarity=0.729 Sum_probs=139.6
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHH--hccc-cCCceEEEeecCceEecCC-CCCCCCCCCcccCCCCcccccccCCCC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~--~~g~-Y~g~~f~Rvi~~f~iQgGd-~~~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|+.|+|+||||++.||+||+||++|| +.|| |+|+.||||+++||||||| +.++|.|++++||.+|+|| ++.++|.
T Consensus 23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 101 (172)
T 2haq_A 23 EPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADE-NLNVKHF 101 (172)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCBCCC-CCCSCCC
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcccCc-CCCcccC
Confidence 78999999999999999999999999 7899 9999999999999999999 5688999999999999999 7889998
Q ss_pred CccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 431 ~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
+|+|||||.+|++|+|||||++.++++||++|+|||+|++|||||++|++++++..++|.++|+|.++.+
T Consensus 102 -~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~ 171 (172)
T 2haq_A 102 -VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGE 171 (172)
T ss_dssp -TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEE
T ss_pred -ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEeEE
Confidence 9999999999999999999999999999999999999999999999999999998889999999998764
No 16
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=7.1e-45 Score=345.46 Aligned_cols=147 Identities=42% Similarity=0.721 Sum_probs=141.5
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHh--ccc-cCCceEEEeecCceEecCC-CCCCCCCCCcccCCCCcccccccCCCC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~--~g~-Y~g~~f~Rvi~~f~iQgGd-~~~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++||||||| +.++|.|+.|+||.+|+|| +..++|+
T Consensus 27 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 105 (188)
T 3ich_A 27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHY 105 (188)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCccccc-ccCcccC
Confidence 789999999999999999999999995 789 9999999999999999999 5689999999999999999 7889999
Q ss_pred CccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 431 ~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
++|+|||||.|||+|+|||||++.+++|||++|+|||+|++|||||++|++++++..++|.++|+|.++.+.
T Consensus 106 ~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l 177 (188)
T 3ich_A 106 GPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177 (188)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred CCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEE
Confidence 999999999999999999999999999999999999999999999999999999988899999999998764
No 17
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=1.1e-44 Score=339.83 Aligned_cols=145 Identities=46% Similarity=0.757 Sum_probs=138.9
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhc--cc-cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccccccCCCC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCER--GY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~--g~-Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|+.|+|+||||++.||+||+||++||++ || |+|+.||||+++|||||||++ ++|.||+++||.+|+|| ...++|+
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE-~~~l~h~ 100 (172)
T 2cmt_A 22 GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDE-NFQLRHE 100 (172)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCccccc-ccCcccC
Confidence 8899999999999999999999999984 88 999999999999999999997 78999999999999999 5789999
Q ss_pred CccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 431 ~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
++|+|||||++||+|+|||||++.+++|||++|+|||+|++|||||++|++++++ +++|.++|+|.++.+
T Consensus 101 ~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~~g~ 170 (172)
T 2cmt_A 101 GFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVIISRCGE 170 (172)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEEEEEEE
T ss_pred CceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEEEEeEe
Confidence 9999999999999999999999999999999999999999999999999999986 689999999998865
No 18
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=5e-45 Score=356.58 Aligned_cols=159 Identities=43% Similarity=0.739 Sum_probs=148.9
Q ss_pred CCCcceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCccc--CCCCcc
Q 010602 344 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIW--GKPFKD 421 (506)
Q Consensus 344 ~~k~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~--g~~~~d 421 (506)
.|+.+++|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.||+++| |.+|++
T Consensus 17 ~p~~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f~d 96 (232)
T 3bkp_A 17 QGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDV 96 (232)
T ss_dssp CCSCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCBCC
T ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCccCC
Confidence 346788999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccccCCCCCccEEEEecCCC--------------CCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHH--HHHhhcCCCC
Q 010602 422 EVNSKLLHSGRGVVSMANSGP--------------HTNGSQFFILYKSATHLNYKHTVFGGVVGGLTT--LAAMEKVPVD 485 (506)
Q Consensus 422 E~~~~l~h~~~G~lsman~g~--------------~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dv--L~~I~~~~t~ 485 (506)
|+.+.++|+.+|+|||||.++ ++|+||||||++++||||++|+|||+|+ ||+| |++|+.++++
T Consensus 97 E~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~ 175 (232)
T 3bkp_A 97 ETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVG 175 (232)
T ss_dssp CCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBC
T ss_pred ccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcC
Confidence 987789999999999999997 6999999999999999999999999999 6765 8999999999
Q ss_pred CCCCcccceEEEeeeecc
Q 010602 486 ENDRPLVSLCVKYPSFRN 503 (506)
Q Consensus 486 ~~~rP~~~I~I~s~~v~~ 503 (506)
.+++|.++|+|.++.|.+
T Consensus 176 ~~~~P~~~i~I~~~~vl~ 193 (232)
T 3bkp_A 176 KEDRPMTPPFIKSVDVLW 193 (232)
T ss_dssp GGGCBSSCCBEEEEEEEE
T ss_pred CCCCcCCCeEEEEEEEEc
Confidence 899999999999998753
No 19
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-45 Score=345.97 Aligned_cols=150 Identities=45% Similarity=0.755 Sum_probs=142.5
Q ss_pred EecCeeeEEEEcCCCChhHHHHHHHHHh-----------ccccCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcc
Q 010602 354 HTTHGDLNIELHCDITPRSCENFITLCE-----------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKD 421 (506)
Q Consensus 354 ~T~~G~I~ieL~~d~aP~t~~NF~~L~~-----------~g~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~d 421 (506)
.|+.|+|+||||++.||+||+||++||+ .+||+|+.||||+++|||||||++ ++|.|++++||..|+|
T Consensus 30 ~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~siyg~~f~d 109 (192)
T 2he9_A 30 REPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKD 109 (192)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCC
T ss_pred CEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCCCcccCCcccC
Confidence 3799999999999999999999999995 579999999999999999999997 8899999999999999
Q ss_pred cccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 422 EVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 422 E~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
| .+.++|+.+|+|||||.|||+|+||||||+.++||||++|+|||+|++|||||++|++++++..++|.++|+|.++.+
T Consensus 110 E-~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~g~ 188 (192)
T 2he9_A 110 E-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 188 (192)
T ss_dssp C-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEE
T ss_pred c-cccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEeEE
Confidence 9 578999999999999999999999999999999999999999999999999999999999998899999999999987
Q ss_pred ccC
Q 010602 502 RNR 504 (506)
Q Consensus 502 ~~~ 504 (506)
-.+
T Consensus 189 l~~ 191 (192)
T 2he9_A 189 LAT 191 (192)
T ss_dssp CC-
T ss_pred Ecc
Confidence 543
No 20
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=2.1e-44 Score=338.20 Aligned_cols=145 Identities=43% Similarity=0.746 Sum_probs=138.8
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHh--ccc-cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccccccCCCC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~--~g~-Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||++ ++|.|++++||..|+|| ...++|+
T Consensus 23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 101 (173)
T 2r99_A 23 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NFILKHT 101 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred ccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCcccCc-ccCcccC
Confidence 789999999999999999999999994 788 999999999999999999998 78999999999999999 6789999
Q ss_pred CccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 431 ~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
++|+|||||++||+|+|||||++.+++|||++|+|||+|++|||||++|++++++ +++|.++|+|.++..
T Consensus 102 ~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~cG~ 171 (173)
T 2r99_A 102 GPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIADCGE 171 (173)
T ss_dssp SSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEE
T ss_pred CCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEEEeee
Confidence 9999999999999999999999999999999999999999999999999999986 689999999998865
No 21
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=1.7e-44 Score=338.10 Aligned_cols=145 Identities=45% Similarity=0.735 Sum_probs=138.1
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHh-ccc--------cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCccccc
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCE-RGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVN 424 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~-~g~--------Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~ 424 (506)
|+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||++ ++|.|++++||.+|+|| .
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~ 93 (170)
T 1qng_A 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDE-N 93 (170)
T ss_dssp SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-C
T ss_pred EeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCccccCCccccc-c
Confidence 348999999999999999999999998 599 999999999999999999997 88999999999999999 6
Q ss_pred ccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 425 ~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
+.++|+++|+|||||+|||+|+||||||+.++||||++|+|||+|++|||||++|+++++ .+++|.++|+|.++..
T Consensus 94 ~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~v~I~~cG~ 169 (170)
T 1qng_A 94 FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGE 169 (170)
T ss_dssp CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSCEEEEEEEE
T ss_pred cccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCCCCeEEEecee
Confidence 789999999999999999999999999999999999999999999999999999999999 5799999999998754
No 22
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=2.5e-44 Score=337.74 Aligned_cols=147 Identities=46% Similarity=0.737 Sum_probs=139.2
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhc--c--------ccCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccc
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCER--G--------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEV 423 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~--g--------~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~ 423 (506)
|+.|+|+||||++.||+||+||++||++ | ||+|+.||||+++|||||||++ ++|.|++++||.+|+||
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg~~f~dE- 93 (173)
T 2igv_A 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDE- 93 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCCCcccCc-
Confidence 4589999999999999999999999986 6 7999999999999999999997 78999999999999999
Q ss_pred cccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeecc
Q 010602 424 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFRN 503 (506)
Q Consensus 424 ~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~~ 503 (506)
.+.++|+++|+|||||+|||+|+|||||++.++||||++|+|||+|++|||||++|++++++ +++|.++|+|.++.+-+
T Consensus 94 ~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~~~v~I~~~g~l~ 172 (173)
T 2igv_A 94 NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCGQLK 172 (173)
T ss_dssp CCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEEEEEC
T ss_pred ccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCCCEEEEEeEEEc
Confidence 57899999999999999999999999999999999999999999999999999999999985 68999999999987643
No 23
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=2.6e-44 Score=335.25 Aligned_cols=146 Identities=42% Similarity=0.727 Sum_probs=139.5
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHh--ccc-cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccccccCCCC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~--~g~-Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||++ ++|.|++++||.+|+|| ++.++|+
T Consensus 15 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 93 (165)
T 2z6w_A 15 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHV 93 (165)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCc-ccccccC
Confidence 688999999999999999999999999 999 999999999999999999996 78999999999999999 6889999
Q ss_pred CccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeeec
Q 010602 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSFR 502 (506)
Q Consensus 431 ~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v~ 502 (506)
++|+|||||.+|++|+|||||++.++||||++|+|||+|++|||||++|+++++ .+++|.++|+|.++.+-
T Consensus 94 ~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l 164 (165)
T 2z6w_A 94 GPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164 (165)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEEC
T ss_pred CCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEeEEE
Confidence 999999999999999999999999999999999999999999999999999986 47999999999998753
No 24
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=1.7e-44 Score=337.32 Aligned_cols=151 Identities=32% Similarity=0.518 Sum_probs=140.4
Q ss_pred ceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccC
Q 010602 348 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 427 (506)
Q Consensus 348 ~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 427 (506)
...|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+++.+ +.+.++.+|++|+...+
T Consensus 3 ~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~--~~~~~~~~~~~E~~~~l 80 (167)
T 3s6m_A 3 GSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGL--KQKPTDAPIANEANNGL 80 (167)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTT--EECCCCCCBCCCGGGCC
T ss_pred CcEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCC--CCCCCCCccCCcccccc
Confidence 4579999999999999999999999999999999999999999999999999999998543 34567899999977777
Q ss_pred CCCCccEEEEec-CCCCCCCceEEEEeCCCCCCCCC--------CcEEEEEEcCHHHHHHhhcCCCCC----CCCcccce
Q 010602 428 LHSGRGVVSMAN-SGPHTNGSQFFILYKSATHLNYK--------HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLVSL 494 (506)
Q Consensus 428 ~h~~~G~lsman-~g~~t~~SqFfItl~~~~~LDgk--------~tVFGrVv~G~dvL~~I~~~~t~~----~~rP~~~I 494 (506)
.| .+|+||||| .+||+|+|||||++.+++|||++ |+|||+|++|||||++|++++++. +++|+++|
T Consensus 81 ~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v 159 (167)
T 3s6m_A 81 KN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDV 159 (167)
T ss_dssp CC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCC
T ss_pred cC-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCe
Confidence 76 899999999 68999999999999999999998 999999999999999999999987 58999999
Q ss_pred EEEeeee
Q 010602 495 CVKYPSF 501 (506)
Q Consensus 495 ~I~s~~v 501 (506)
+|.+++|
T Consensus 160 ~I~~~~i 166 (167)
T 3s6m_A 160 VIEKAVV 166 (167)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999987
No 25
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=7.3e-44 Score=332.01 Aligned_cols=145 Identities=37% Similarity=0.637 Sum_probs=140.1
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHh--ccc-cCCceEEEeecCceEecCC-CCCCCCCCCcccCCCCcccccccCCCC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~--~g~-Y~g~~f~Rvi~~f~iQgGd-~~~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|+.|+|+||||++.||+||+||++||+ .|| |+|+.|||++++||||||| +.++|.|+.++||.+|++| ++.++|+
T Consensus 14 t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE-~~~l~h~ 92 (164)
T 3pmp_A 14 KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADE-NFQVKHT 92 (164)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCcccccc-ccccCcC
Confidence 889999999999999999999999999 889 9999999999999999999 5689999999999999999 7889999
Q ss_pred CccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 431 ~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
++|+|||||.+|++++|||||++.++||||++|+|||+|++|||||++|++++++ +++|..+|+|.++.+
T Consensus 93 ~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~cg~ 162 (164)
T 3pmp_A 93 KPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGT 162 (164)
T ss_dssp STTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEE
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeCeE
Confidence 9999999999999999999999999999999999999999999999999999997 799999999999865
No 26
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=4.2e-44 Score=339.70 Aligned_cols=146 Identities=44% Similarity=0.706 Sum_probs=139.8
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhc--c-ccCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccccccCCCC
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCER--G-YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~--g-~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|+.|+|+||||++.||+||+||++||++ | ||+|+.|||++++|||||||++ ++|.|+.++||..|++| +..++|+
T Consensus 24 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~de-~~~~~h~ 102 (185)
T 4fru_A 24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHY 102 (185)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCccCcc-ccccCcC
Confidence 4589999999999999999999999976 6 7999999999999999999997 88999999999999999 6789999
Q ss_pred CccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeeee
Q 010602 431 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPSF 501 (506)
Q Consensus 431 ~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~v 501 (506)
++|+|||||.+|++|+|||||++.+++|||++|+|||+|++|||||++|++++++..++|.++|+|.++.+
T Consensus 103 ~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~ 173 (185)
T 4fru_A 103 GPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGK 173 (185)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEE
T ss_pred CCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEceE
Confidence 99999999999999999999999999999999999999999999999999999998899999999999764
No 27
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=8.4e-44 Score=337.42 Aligned_cols=144 Identities=47% Similarity=0.790 Sum_probs=136.3
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHh--ccc--------cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCCcccc
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCE--RGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEV 423 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~--~g~--------Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~ 423 (506)
|+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||++ ++|.|++++||.+|+||
T Consensus 31 t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~si~g~~f~dE- 109 (186)
T 2poy_A 31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDE- 109 (186)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCCTTC-CBCCC-
T ss_pred EecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCccCCCcccCc-
Confidence 569999999999999999999999996 588 999999999999999999997 78999999999999999
Q ss_pred cccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEeee
Q 010602 424 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYPS 500 (506)
Q Consensus 424 ~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~~ 500 (506)
.+.++|+++|+|||||.|||+|+|||||++.++||||++|+|||+|++|||||++|++++++ +++|.++|+|.++.
T Consensus 110 ~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~~~P~~~v~I~~cG 185 (186)
T 2poy_A 110 NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKPTKSVCITASG 185 (186)
T ss_dssp CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCCSSCEEEEEEE
T ss_pred ccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCCCEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999994 78999999999874
No 28
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=2.4e-44 Score=335.33 Aligned_cols=149 Identities=34% Similarity=0.595 Sum_probs=138.5
Q ss_pred EEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcccccccCCCC
Q 010602 351 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHS 430 (506)
Q Consensus 351 v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~ 430 (506)
|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++.. .|.++||.+|++|+...+.|
T Consensus 2 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--~g~~~~g~~~~dE~~~~l~~- 78 (164)
T 1lop_A 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--MKQKATKEPIKNEANNGLKN- 78 (164)
T ss_dssp EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT--TEECCCCCCBCCCCCSSCCC-
T ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC--CCcCCCCCcccccccccccc-
Confidence 789999999999999999999999999999999999999999999999999999732 25778999999997666777
Q ss_pred CccEEEEecC-CCCCCCceEEEEeCCCCCCCCC--------CcEEEEEEcCHHHHHHhhcCCCCC----CCCcccceEEE
Q 010602 431 GRGVVSMANS-GPHTNGSQFFILYKSATHLNYK--------HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLVSLCVK 497 (506)
Q Consensus 431 ~~G~lsman~-g~~t~~SqFfItl~~~~~LDgk--------~tVFGrVv~G~dvL~~I~~~~t~~----~~rP~~~I~I~ 497 (506)
.+|+|||||. +||+++|||||++.+++|||++ |+|||+|++|||||++|++++++. .++|.++|+|.
T Consensus 79 ~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~ 158 (164)
T 1lop_A 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_dssp CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEE
Confidence 6999999974 8999999999999999999998 999999999999999999999975 48999999999
Q ss_pred eeeec
Q 010602 498 YPSFR 502 (506)
Q Consensus 498 s~~v~ 502 (506)
++.+.
T Consensus 159 ~~~v~ 163 (164)
T 1lop_A 159 SVTVS 163 (164)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99874
No 29
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=5.7e-44 Score=333.37 Aligned_cols=153 Identities=31% Similarity=0.509 Sum_probs=139.6
Q ss_pred cceEEEEEecCeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccccccc
Q 010602 347 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 426 (506)
Q Consensus 347 ~~~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 426 (506)
....|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+++.+. ...++.+|++|+...
T Consensus 3 ~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--~~~~g~~~~dE~~~~ 80 (166)
T 1v9t_A 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNG 80 (166)
T ss_dssp CSCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCC--BCCCCCCBCCCGGGS
T ss_pred CCeEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCC--CCCCCCccccccccc
Confidence 456899999999999999999999999999999999999999999999999999999986543 345788999996555
Q ss_pred CCCCCccEEEEecC-CCCCCCceEEEEeCCCCCCCCC-----CcEEEEEEcCHHHHHHhhcCCCCC----CCCcccceEE
Q 010602 427 LLHSGRGVVSMANS-GPHTNGSQFFILYKSATHLNYK-----HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLVSLCV 496 (506)
Q Consensus 427 l~h~~~G~lsman~-g~~t~~SqFfItl~~~~~LDgk-----~tVFGrVv~G~dvL~~I~~~~t~~----~~rP~~~I~I 496 (506)
+. +.+|+|||||. +||+|+|||||++.+++|||++ |+|||+|++|||||++|++++++. .++|.++|+|
T Consensus 81 l~-~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I 159 (166)
T 1v9t_A 81 LR-NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159 (166)
T ss_dssp CC-CCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBE
T ss_pred cc-CCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEE
Confidence 54 57999999997 6999999999999999999998 999999999999999999999986 4799999999
Q ss_pred Eeeeec
Q 010602 497 KYPSFR 502 (506)
Q Consensus 497 ~s~~v~ 502 (506)
.++.|.
T Consensus 160 ~~~~v~ 165 (166)
T 1v9t_A 160 LSATVL 165 (166)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999875
No 30
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=1.8e-44 Score=338.39 Aligned_cols=148 Identities=39% Similarity=0.634 Sum_probs=112.2
Q ss_pred EEecCeeeEEEEcCCCChhHHHHHHHHHh--ccc-cCCceEEEeecCceEecCC-CCCCCCCCCcccCCCCcccccccCC
Q 010602 353 LHTTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFKDEVNSKLL 428 (506)
Q Consensus 353 l~T~~G~I~ieL~~d~aP~t~~NF~~L~~--~g~-Y~g~~f~Rvi~~f~iQgGd-~~~~g~gg~si~g~~~~dE~~~~l~ 428 (506)
+.|+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++||||||| +.++|.|++++||.+|+|| ++.++
T Consensus 17 ~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~~~ 95 (172)
T 2c3b_A 17 AETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADE-NFSRK 95 (172)
T ss_dssp SCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------CHH
T ss_pred eecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCc-ccccc
Confidence 34888999999999999999999999999 788 9999999999999999999 7799999999999999999 78899
Q ss_pred CCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEc--CHHHHHHhhcCCCCCCC-CcccceEEEeeee
Q 010602 429 HSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG--GLTTLAAMEKVPVDEND-RPLVSLCVKYPSF 501 (506)
Q Consensus 429 h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~--G~dvL~~I~~~~t~~~~-rP~~~I~I~s~~v 501 (506)
|+++|+|||||.+||+|+|||||++.++||||++|+|||+|++ |||||++|++++++..+ +|.++|+|.++..
T Consensus 96 h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~ 171 (172)
T 2c3b_A 96 HDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGE 171 (172)
T ss_dssp HHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEE
T ss_pred cCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCee
Confidence 9999999999999999999999999999999999999999999 99999999999998654 9999999998754
No 31
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=2.3e-43 Score=343.48 Aligned_cols=153 Identities=39% Similarity=0.631 Sum_probs=143.2
Q ss_pred ceEEEEE-----ecCeeeEEEEcCCCChhHHHHHHHHHhcc--------ccCCceEEEeecCceEecCCCC-CCCCCCCc
Q 010602 348 KGYVQLH-----TTHGDLNIELHCDITPRSCENFITLCERG--------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGES 413 (506)
Q Consensus 348 ~~~v~l~-----T~~G~I~ieL~~d~aP~t~~NF~~L~~~g--------~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~s 413 (506)
...|.|. |+.|+|+||||++.||+||+||++||+++ ||+|+.||||+++|||||||++ ++|.|+++
T Consensus 59 ~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~s 138 (229)
T 1z81_A 59 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLS 138 (229)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCB
T ss_pred CcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCc
Confidence 3455555 45899999999999999999999999987 7999999999999999999996 88999999
Q ss_pred ccCCCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEE--cCHHHHHHhhcCCCCCC-CCc
Q 010602 414 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVV--GGLTTLAAMEKVPVDEN-DRP 490 (506)
Q Consensus 414 i~g~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv--~G~dvL~~I~~~~t~~~-~rP 490 (506)
+||..|+|| .+.++|+++|+|||||.+||+|+||||||+.+++|||++|+|||+|+ +|||||++|++++++.. ++|
T Consensus 139 iyg~~f~dE-~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P 217 (229)
T 1z81_A 139 IYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKP 217 (229)
T ss_dssp TTBSCCCCC-CCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCB
T ss_pred cCCCccccc-ccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCC
Confidence 999999999 67899999999999999999999999999999999999999999999 99999999999999976 999
Q ss_pred ccceEEEeeee
Q 010602 491 LVSLCVKYPSF 501 (506)
Q Consensus 491 ~~~I~I~s~~v 501 (506)
.++|+|.++..
T Consensus 218 ~~~V~I~~cG~ 228 (229)
T 1z81_A 218 KIPINVVECGE 228 (229)
T ss_dssp SSCEEEEEEEE
T ss_pred CCCeEEEeCee
Confidence 99999998754
No 32
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=8.3e-43 Score=330.32 Aligned_cols=152 Identities=41% Similarity=0.646 Sum_probs=140.7
Q ss_pred eEEEEEec-----CeeeEEEEcCCCChhHHHHHHHHHhccc---cCCceEEEeecCceEecCCCC-CCCCCCCcccCCCC
Q 010602 349 GYVQLHTT-----HGDLNIELHCDITPRSCENFITLCERGY---YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPF 419 (506)
Q Consensus 349 ~~v~l~T~-----~G~I~ieL~~d~aP~t~~NF~~L~~~g~---Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg~si~g~~~ 419 (506)
..|.|.++ .|+|+||||++.||+||+||++||++++ |+|+.||||+++|||||||+. ++|.|+.++||..|
T Consensus 23 p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~~ 102 (184)
T 3rdd_A 23 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 102 (184)
T ss_dssp CEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred CEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCcc
Confidence 34556654 9999999999999999999999997654 999999999999999999954 88999999999999
Q ss_pred cccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcccceEEEee
Q 010602 420 KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLVSLCVKYP 499 (506)
Q Consensus 420 ~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~~~I~I~s~ 499 (506)
++| ++.++|+.+|+|||||.+|++++|||||++.++++||++|+|||+|++|||||++|++++++ +++|..+|+|.++
T Consensus 103 ~de-~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~P~~~v~I~~c 180 (184)
T 3rdd_A 103 EDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADC 180 (184)
T ss_dssp CCC-CCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEE
T ss_pred cCc-ccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCCCcCCeEEEeC
Confidence 999 67899999999999999999999999999999999999999999999999999999999975 7999999999998
Q ss_pred eec
Q 010602 500 SFR 502 (506)
Q Consensus 500 ~v~ 502 (506)
.+-
T Consensus 181 G~l 183 (184)
T 3rdd_A 181 GQL 183 (184)
T ss_dssp EEC
T ss_pred eEE
Confidence 763
No 33
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.9e-42 Score=330.04 Aligned_cols=153 Identities=41% Similarity=0.698 Sum_probs=143.1
Q ss_pred ceEEEEE---ecCeeeEEEEcCCCChhHHHHHHHHHh--ccc-cCCceEEEeecCceEecCCC-CCCCCCCCcccCCCCc
Q 010602 348 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDP-TGTGRGGESIWGKPFK 420 (506)
Q Consensus 348 ~~~v~l~---T~~G~I~ieL~~d~aP~t~~NF~~L~~--~g~-Y~g~~f~Rvi~~f~iQgGd~-~~~g~gg~si~g~~~~ 420 (506)
.-|..+. |+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||+ .++|.|+.++||..|+
T Consensus 29 ~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~ 108 (193)
T 3k2c_A 29 NVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFP 108 (193)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBC
T ss_pred EEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCccc
Confidence 4455554 789999999999999999999999998 778 99999999999999999994 5789999999999999
Q ss_pred ccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcc--cceEEEe
Q 010602 421 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL--VSLCVKY 498 (506)
Q Consensus 421 dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~--~~I~I~s 498 (506)
+| ++.++|+++|+|||||.+|++++|||||+++++++||++|+|||+|++|||||++|++++++ +++|. .+|+|.+
T Consensus 109 dE-~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~I~~ 186 (193)
T 3k2c_A 109 DE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIEIRD 186 (193)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEEEEE
T ss_pred cc-ccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEEEEE
Confidence 99 78899999999999999999999999999999999999999999999999999999999998 68999 9999999
Q ss_pred eeec
Q 010602 499 PSFR 502 (506)
Q Consensus 499 ~~v~ 502 (506)
+.+-
T Consensus 187 cG~l 190 (193)
T 3k2c_A 187 CGVL 190 (193)
T ss_dssp EEEC
T ss_pred ceEe
Confidence 8764
No 34
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=1.5e-42 Score=339.63 Aligned_cols=146 Identities=25% Similarity=0.400 Sum_probs=133.9
Q ss_pred ecCeeeEEEEcCCCChhHHHHHHHHHhc-----------------c--c-cCCceEEEeecCceEecCC-CCCCCCCCCc
Q 010602 355 TTHGDLNIELHCDITPRSCENFITLCER-----------------G--Y-YNGVAFHRSIRNFMIQGGD-PTGTGRGGES 413 (506)
Q Consensus 355 T~~G~I~ieL~~d~aP~t~~NF~~L~~~-----------------g--~-Y~g~~f~Rvi~~f~iQgGd-~~~~g~gg~s 413 (506)
|+.|+|+||||++.||+||+||++||++ | | |+|+.|||||++||||||| +.++|.||+|
T Consensus 26 t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g~G~Gg~s 105 (234)
T 2ose_A 26 EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGT 105 (234)
T ss_dssp EEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC----CCCCC
T ss_pred cccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCCCCCCCcc
Confidence 9999999999999999999999999984 5 7 9999999999999999999 5699999999
Q ss_pred ccCCC-----CcccccccCCCCCccEEEEec----CCCCCCCceEEEEeCC------CCCCCCCCcEEEEEEcCHHHHHH
Q 010602 414 IWGKP-----FKDEVNSKLLHSGRGVVSMAN----SGPHTNGSQFFILYKS------ATHLNYKHTVFGGVVGGLTTLAA 478 (506)
Q Consensus 414 i~g~~-----~~dE~~~~l~h~~~G~lsman----~g~~t~~SqFfItl~~------~~~LDgk~tVFGrVv~G~dvL~~ 478 (506)
+||.. |+ + +.++|+++|+||||| +||++|+||||||+.+ ++|||++|+|||+|++|||||++
T Consensus 106 iyg~~~~p~~f~-~--~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~ 182 (234)
T 2ose_A 106 VYCDEPIPPVFG-D--YFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDK 182 (234)
T ss_dssp TTTTCCBCCCCC-S--CCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHH
T ss_pred ccCCccCccccc-C--cCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHH
Confidence 99988 66 4 578999999999999 9999999999999999 99999999999999999999999
Q ss_pred hhcCCCCCCCCcccceEEEeeeecc
Q 010602 479 MEKVPVDENDRPLVSLCVKYPSFRN 503 (506)
Q Consensus 479 I~~~~t~~~~rP~~~I~I~s~~v~~ 503 (506)
|++++++.+++|.++|+|.++.+..
T Consensus 183 I~~~~t~~~~~P~~~V~I~~~~~l~ 207 (234)
T 2ose_A 183 INSMIKPYAGRKYPTFSIGKCGAYL 207 (234)
T ss_dssp HHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred HHhCCcCCCCCccCCEEEEEEEEec
Confidence 9999999889999999999998754
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=3.1e-41 Score=350.24 Aligned_cols=153 Identities=42% Similarity=0.698 Sum_probs=144.1
Q ss_pred eEEEEEec-----CeeeEEEEcCCCChhHHHHHHHHHhc--------c---ccCCceEEEeecCceEecCCCC-CCCCCC
Q 010602 349 GYVQLHTT-----HGDLNIELHCDITPRSCENFITLCER--------G---YYNGVAFHRSIRNFMIQGGDPT-GTGRGG 411 (506)
Q Consensus 349 ~~v~l~T~-----~G~I~ieL~~d~aP~t~~NF~~L~~~--------g---~Y~g~~f~Rvi~~f~iQgGd~~-~~g~gg 411 (506)
..|.|.|+ .|+|+||||++.||+||+||+.||++ | ||+|+.|||||++|||||||++ ++|+||
T Consensus 16 ~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~ 95 (370)
T 1ihg_A 16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGG 95 (370)
T ss_dssp CEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred CeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCC
Confidence 35666655 89999999999999999999999997 7 7999999999999999999999 899999
Q ss_pred CcccCCCCcccccccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCCCCcEEEEEEcCHHHHHHhhcCCCCCCCCcc
Q 010602 412 ESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 491 (506)
Q Consensus 412 ~si~g~~~~dE~~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDgk~tVFGrVv~G~dvL~~I~~~~t~~~~rP~ 491 (506)
+++||.+|+|| ++.++|+++|+|||||.|||+||||||||++++||||++|||||+|++||+||++|+.++++. ++|.
T Consensus 96 ~~~~~~~~~~e-~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~ 173 (370)
T 1ihg_A 96 ESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA 173 (370)
T ss_dssp CBTTBSCBCCC-CCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred CCCCCCCcCCC-cCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence 99999999999 678999999999999999999999999999999999999999999999999999999999986 9999
Q ss_pred cceEEEeeeecc
Q 010602 492 VSLCVKYPSFRN 503 (506)
Q Consensus 492 ~~I~I~s~~v~~ 503 (506)
.+|+|.++.+..
T Consensus 174 ~~v~I~~~g~l~ 185 (370)
T 1ihg_A 174 KLCVIAECGELK 185 (370)
T ss_dssp SCEEEEEEEEEC
T ss_pred eeEEEEEEEEec
Confidence 999999987753
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=2.1e-37 Score=319.31 Aligned_cols=136 Identities=26% Similarity=0.439 Sum_probs=125.3
Q ss_pred CcceEEEEEec--------CeeeEEEEcCCCChhHHHHHHHHHhccccCCceEEEeecCceEecCCCCCCCCC-------
Q 010602 346 KKKGYVQLHTT--------HGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRG------- 410 (506)
Q Consensus 346 k~~~~v~l~T~--------~G~I~ieL~~d~aP~t~~NF~~L~~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~g------- 410 (506)
..+.+|.|.|+ .|+|+||||++.||+||+||+.||+.|||+|+.|||| ++||||||||+++|.|
T Consensus 168 ~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g 246 (369)
T 3rfy_A 168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTE 246 (369)
T ss_dssp CSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCC
T ss_pred CCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccC
Confidence 56788999987 8999999999999999999999999999999999999 9999999999988776
Q ss_pred --------------CCcccCCCCcccc----cccCCCCCccEEEEecC--CCCCCCceEEEEe-------CCCCCCCCCC
Q 010602 411 --------------GESIWGKPFKDEV----NSKLLHSGRGVVSMANS--GPHTNGSQFFILY-------KSATHLNYKH 463 (506)
Q Consensus 411 --------------g~si~g~~~~dE~----~~~l~h~~~G~lsman~--g~~t~~SqFfItl-------~~~~~LDgk~ 463 (506)
+.++|+..|++|. .+.++|+++|+|||||+ +||+++|||||++ .+++|||++|
T Consensus 247 ~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgky 326 (369)
T 3rfy_A 247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRY 326 (369)
T ss_dssp CCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCE
T ss_pred cCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCe
Confidence 5688888888872 35788999999999998 8999999999999 4789999999
Q ss_pred cEEEEEEcCHHHHHHhhcC
Q 010602 464 TVFGGVVGGLTTLAAMEKV 482 (506)
Q Consensus 464 tVFGrVv~G~dvL~~I~~~ 482 (506)
+|||+|++|||||++|++.
T Consensus 327 tVFG~VveGmdVVdkI~~G 345 (369)
T 3rfy_A 327 AVFGYVTDNEDFLADLKVG 345 (369)
T ss_dssp EEEEEEEESTTGGGGCCTT
T ss_pred eEEEEEecCHHHHHHHhCC
Confidence 9999999999999999874
No 37
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.52 E-value=5e-15 Score=115.39 Aligned_cols=56 Identities=23% Similarity=0.514 Sum_probs=53.3
Q ss_pred ccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccc
Q 010602 40 YCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHK 95 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~k 95 (506)
++|+||+++|+|||++ ++|++||+++|.+||.++++||+||++|+.+||+++++.+
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~~ 60 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSA 60 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC-
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccCC
Confidence 5899999999999999 9999999999999999999999999999999999999864
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=1.1e-11 Score=108.96 Aligned_cols=116 Identities=15% Similarity=0.331 Sum_probs=100.6
Q ss_pred CccccCCCCCCCCc-------eecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeeccccccccc
Q 010602 39 FYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFT 111 (506)
Q Consensus 39 f~~C~LSl~p~~dP-------V~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~ 111 (506)
-..|+|+++.+.+| ++++-||+|++..|.+||.....||+-+.++..+++.++.+. .....||||...|.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~---~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG---SGTVSCPICMDGYS 83 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS---SSSCBCTTTCCBHH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC---CCCCCCCCCCCccc
Confidence 45799999999999 888999999999999999999999999999999999887654 44678999999987
Q ss_pred Cc---eEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEec
Q 010602 112 EF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 112 ~~---t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
+. .+.+++-+|||+|+..|+++.....+.| |+|..++..+|++.|.
T Consensus 84 ~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~C--P~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 84 EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTC--PTCRKKINHKRYHPIY 132 (133)
T ss_dssp HHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBC--TTTCCBCCGGGEEEEC
T ss_pred cccccCcceEeCCCCChhhHHHHHHHHHcCCCC--CCCCCcCChhcceeee
Confidence 63 3455677999999999999886666777 9999999999998763
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.20 E-value=5.5e-12 Score=104.35 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=61.0
Q ss_pred CCCC-CccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCcee
Q 010602 35 KRLP-FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (506)
Q Consensus 35 ~~lp-f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~ 101 (506)
..+| .+.|+||+++|++||+++.||+||+.+|..||..+.+||+++++++..+|+++...++....|
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 3344 889999999999999999999999999999999999999999999999999999988766555
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.18 E-value=8.4e-12 Score=106.12 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=62.2
Q ss_pred CCCCCC-CccccCCCCCCCCceecCCC-ceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCcee
Q 010602 33 PFKRLP-FYCCALTFTPFEDPVCTADG-SVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (506)
Q Consensus 33 ~~~~lp-f~~C~LSl~p~~dPV~t~~G-~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~ 101 (506)
.+..+| .+.|+||+++|+|||+++.| |+||+.+|..||..+.+||+++++|...+|+++...++....|
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 344455 88999999999999999999 9999999999999999999999999999999999988876655
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.15 E-value=1.2e-11 Score=105.44 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceee
Q 010602 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYH 102 (506)
Q Consensus 37 lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~ 102 (506)
+..+.||||+.+|.|||+++.||+||+.+|..||..+.+||+|+++|+..+|+++...++....|.
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 348999999999999999999999999999999998899999999999999999999887665553
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.03 E-value=4.6e-11 Score=112.17 Aligned_cols=65 Identities=25% Similarity=0.498 Sum_probs=59.7
Q ss_pred CCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcC-CCCCCCCCCCCCCcccccccccCCcee
Q 010602 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNAEGEY 101 (506)
Q Consensus 37 lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~-~~Pvtg~~l~~kdLi~l~f~kn~~~~~ 101 (506)
++.++||||+.+|.|||++++||+||+.+|..|+..++ +||+||++|+..+|+++...++....|
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 56899999999999999999999999999999999865 599999999999999999998876655
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=3.1e-10 Score=95.45 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=54.2
Q ss_pred CCccccCCCCCCCCceecC-CCceeehhhHHHHHHhc------CCCCCCCCC---CCCCCcccccccccCCcee
Q 010602 38 PFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKY------GKHPVTGTP---LKLEDLIPLTFHKNAEGEY 101 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~-~G~lf~k~~I~~~L~~~------~~~Pvtg~~---l~~kdLi~l~f~kn~~~~~ 101 (506)
..+.||||+++|.+||+++ .||+||+.+|.+||..+ .+||+||.+ +...+|+++...++....|
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 4678999999999999995 99999999999999976 289998877 8889999887776654443
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=1.4e-09 Score=107.08 Aligned_cols=67 Identities=25% Similarity=0.502 Sum_probs=59.3
Q ss_pred CCCCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCC-CCCCCCCCCCCCcccccccccCCcee
Q 010602 35 KRLPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGK-HPVTGTPLKLEDLIPLTFHKNAEGEY 101 (506)
Q Consensus 35 ~~lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~-~Pvtg~~l~~kdLi~l~f~kn~~~~~ 101 (506)
..++++.|+||+.+|.+||+++.||+||+.+|..|+...+. ||+++.+++..+|+++...++....|
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 34569999999999999999999999999999999997654 99999999999999998887765554
No 45
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.55 E-value=3.2e-08 Score=79.45 Aligned_cols=63 Identities=21% Similarity=0.372 Sum_probs=55.4
Q ss_pred CCCccccCCCCCCCCceecCCCceeehhhHHHHHHh-cCCCCCCCCCCCCCCcccccccccCCc
Q 010602 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFHKNAEG 99 (506)
Q Consensus 37 lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~-~~~~Pvtg~~l~~kdLi~l~f~kn~~~ 99 (506)
.....|+||+++|.+||+++.||+|++..|..|+.. ..+||+.+.++...+|+++...++...
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~ 69 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIA 69 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHH
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHH
Confidence 357889999999999999999999999999999987 678999999999999988877665433
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.48 E-value=2.4e-08 Score=113.45 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=63.7
Q ss_pred CCCCCCccccCCCCCCCCceecCCC-ceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeec
Q 010602 34 FKRLPFYCCALTFTPFEDPVCTADG-SVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHC 103 (506)
Q Consensus 34 ~~~lpf~~C~LSl~p~~dPV~t~~G-~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~C 103 (506)
...+++++|||+++.|+|||+.++| ++||+.+|.+||..+++||+|++||+..+|+|+.-.+..+.+|+-
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 3446699999999999999999997 799999999999999999999999999999999999988777753
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.23 E-value=8e-07 Score=68.79 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=46.4
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqd 160 (506)
.|+||+|+..|.+- |+..+||+||..+||++...+.+ .||+|+++++.+|+|.++-
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCCChhhcEECcc
Confidence 48999999999864 54448999999999999865444 3599999999999999874
No 48
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.05 E-value=5.2e-07 Score=88.94 Aligned_cols=57 Identities=21% Similarity=0.441 Sum_probs=43.9
Q ss_pred CCccccCCCCCCCCceec-CCCceeehhhHHHHHHhcC--CCCCCC--CCCCCCCccccccc
Q 010602 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYG--KHPVTG--TPLKLEDLIPLTFH 94 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~--~~Pvtg--~~l~~kdLi~l~f~ 94 (506)
....||||+.+|++||.+ ..||+||+.+|..|+...+ .||++| +++...||++....
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L 241 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHH
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHH
Confidence 466799999999999986 8999999999999997542 466644 66666666555443
No 49
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.96 E-value=5.3e-06 Score=64.11 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=47.9
Q ss_pred ceeecccccc-cccCceEEEEEecCCeeecHHHHHHHhc-cccCccccCCCCCCCCCCeEEe
Q 010602 99 GEYHCPVLNK-VFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFTKEDLITI 158 (506)
Q Consensus 99 ~~~~CPvt~k-~f~~~t~iv~ik~~G~V~s~~~v~~l~~-k~k~~~d~v~~~~f~~~DiI~L 158 (506)
+++.||||.. .|.+....+++.+|||+|+.+||.++.. ....| |+|..+++..|++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~C--P~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNC--PECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSC--TTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcC--CCCCCccccccceee
Confidence 3688999999 8888777666789999999999999833 23456 999999999998764
No 50
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=8.2e-05 Score=59.67 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=52.0
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHh------cCCCCCCCCCCCCCCccccccccc
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK------YGKHPVTGTPLKLEDLIPLTFHKN 96 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~------~~~~Pvtg~~l~~kdLi~l~f~kn 96 (506)
....|+||+..+.+|+..+-||+|++..|..|+.. ...||+-+.++...+|.++....+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 46789999999999999999999999999999987 668999999999888887766554
No 51
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=7.8e-05 Score=58.65 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=49.1
Q ss_pred CCccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 010602 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l 91 (506)
+...|+|++..+.+||.. +-||+|++..|..|+.....||+-+.++...+++.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 467899999999999986 999999999999999988899999999998888764
No 52
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.70 E-value=9e-05 Score=59.42 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=50.6
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHh------cCCCCCCCCCCCCCCccccccccc
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK------YGKHPVTGTPLKLEDLIPLTFHKN 96 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~------~~~~Pvtg~~l~~kdLi~l~f~kn 96 (506)
....|+||+..+.+|+.++-||+|++..|..|+.. ...||+-+.++...+|.++....+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 36789999999999999999999999999999998 557888888888888877665544
No 53
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.70 E-value=3.9e-05 Score=63.13 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=37.7
Q ss_pred CCccccCCCCCCCCceecC-CCceeehhhHHHHHHhcC--CCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKYG--KHPVTGTPL 83 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~-~G~lf~k~~I~~~L~~~~--~~Pvtg~~l 83 (506)
....|+||+..|.+||.++ -||+|++..|..|+...+ .||+.+.++
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4678999999999999998 799999999999998543 455554443
No 54
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.67 E-value=2.9e-05 Score=59.06 Aligned_cols=58 Identities=14% Similarity=0.352 Sum_probs=48.4
Q ss_pred ceeecccccccccCc---eEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEe
Q 010602 99 GEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~---t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~L 158 (506)
+++.||||...|.+. .+.+++.+|||+|+.+|+.+.......| |+|..++..+|++.|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~C--P~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTC--PTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBC--TTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCC--CCCCccCCccceeee
Confidence 467899999999763 3556678999999999999986555667 999999999999876
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.65 E-value=3e-05 Score=65.30 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=47.1
Q ss_pred CccccCCCCCCCCcee-cCCCceeehhhHHHHHHhc-CCCCCCCCCCCCCCccccccc
Q 010602 39 FYCCALTFTPFEDPVC-TADGSVFELMSITPYIRKY-GKHPVTGTPLKLEDLIPLTFH 94 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~-t~~G~lf~k~~I~~~L~~~-~~~Pvtg~~l~~kdLi~l~f~ 94 (506)
...|+||+..+.+||. ++-||+|++..|.+|+... ..||+-+.++...+|+++.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTH
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHH
Confidence 4579999999999999 7999999999999999977 467777777777777666554
No 56
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.65 E-value=3.6e-05 Score=60.01 Aligned_cols=56 Identities=14% Similarity=0.282 Sum_probs=50.5
Q ss_pred CCccccCCCCCCCCc-------eecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 010602 38 PFYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (506)
Q Consensus 38 pf~~C~LSl~p~~dP-------V~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (506)
.-..|+|+++.+.+| ++.+-||+|+...|.+|+.....||+-+.++..+++.++.+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 356799999999998 78899999999999999999999999999999999988753
No 57
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.57 E-value=3.8e-05 Score=58.45 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=49.2
Q ss_pred ccccCCCCCCCCc-------eecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 010602 40 YCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (506)
Q Consensus 40 ~~C~LSl~p~~dP-------V~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (506)
..|+|++..+.+| ++++-||+|+...|.+|+.....||+-+.++..++++++.|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4699999999988 77899999999999999999899999999999999988754
No 58
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.55 E-value=4.8e-05 Score=65.87 Aligned_cols=67 Identities=30% Similarity=0.432 Sum_probs=57.1
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHhcC-CCCCCCCCCCCCCcccccccccC--Cceeecc
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNA--EGEYHCP 104 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~-~~Pvtg~~l~~kdLi~l~f~kn~--~~~~~CP 104 (506)
....|+||+.++.+||.++-||+|++..|..|+...+ .||+-+.++...++++..+..+. .-...||
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~ 86 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECS
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECC
Confidence 3668999999999999999999999999999999876 89999999988888887776654 3345677
No 59
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.53 E-value=4.1e-05 Score=59.68 Aligned_cols=60 Identities=15% Similarity=0.387 Sum_probs=49.8
Q ss_pred CCceeecccccccccCc---eEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEe
Q 010602 97 AEGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (506)
Q Consensus 97 ~~~~~~CPvt~k~f~~~---t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~L 158 (506)
..+++.||||...|.+. ...+++.+|||+|+.+||.+.......| |+|..++..++++.|
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~C--P~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTC--PTCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBC--TTTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCC--CCCCCccChhheeec
Confidence 35678999999999764 4566778999999999999986666677 999999999988765
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00018 Score=57.73 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=38.3
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCC
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~ 84 (506)
...|+||+..+.+||+++-||+|++..|..|+.....||+-+.++.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 5679999999999999999999999999999986555555554443
No 61
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.50 E-value=8.2e-05 Score=63.20 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=45.2
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcC---CCCCCCCCCCCCCcccccc
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG---KHPVTGTPLKLEDLIPLTF 93 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~---~~Pvtg~~l~~kdLi~l~f 93 (506)
...|+||+..+.+|+.++-||+|++..|..|+.... .||+-+.++...+|.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHH
Confidence 457999999999999999999999999999998653 6777777777666665543
No 62
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.50 E-value=7.6e-05 Score=67.70 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=42.8
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcC-CCCCCCCCCCCC-Ccccc
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLE-DLIPL 91 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~-~~Pvtg~~l~~k-dLi~l 91 (506)
...|+||+.++.+||+++-||+||+.+|..|+.... .||+.+.++... +|.++
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n 132 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPN 132 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBC
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCC
Confidence 568999999999999999999999999999998543 566666666665 44433
No 63
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.49 E-value=4.9e-05 Score=63.57 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=43.3
Q ss_pred CccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccc
Q 010602 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTF 93 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (506)
...|+||+..+.+||.. +-||.|++..|..|+.....||+.+.++...+|.++.+
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 77 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRI 77 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHH
Confidence 56799999999999988 89999999999999986555666666555555544433
No 64
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.47 E-value=9e-05 Score=64.58 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=40.8
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcC-CCCCCCCCCCC-CCccc
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKL-EDLIP 90 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~-~~Pvtg~~l~~-kdLi~ 90 (506)
...|+||+..+.+||.++-||+||+..|..|+.... .||+.+.++.. .+|.+
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 105 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV 105 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCC
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCC
Confidence 457999999999999999999999999999998433 56666655554 34433
No 65
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00013 Score=56.33 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=45.2
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHH-hcCCCCCCCCCCCCCCc
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPVTGTPLKLEDL 88 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~-~~~~~Pvtg~~l~~kdL 88 (506)
....|+|++..+.+||.++-||+|++..|..|+. ....||+-+.++..++|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4678999999999999999999999999999995 45679999888888776
No 66
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=8.8e-05 Score=58.36 Aligned_cols=55 Identities=7% Similarity=0.109 Sum_probs=45.4
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
...+.||||...|.+ -|.+.+|||+|+..||.+.......| |+|..++...|++.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~C--P~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRC--PKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSC--TTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcC--CCcCcccCcccccc
Confidence 456899999999986 34457999999999999886555667 99999999888764
No 67
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.45 E-value=0.0003 Score=55.67 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=41.3
Q ss_pred CCccccCCCCCCCCceecC-CCceeehhhHHHHHHhc--CCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCTA-DGSVFELMSITPYIRKY--GKHPVTGTPLKL 85 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~-~G~lf~k~~I~~~L~~~--~~~Pvtg~~l~~ 85 (506)
....|+|++..+.+||.++ -||+|++..|..|+... ..||+-+.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4678999999999999998 79999999999999976 478888776443
No 68
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.41 E-value=0.00012 Score=59.94 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=43.1
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..+|.||||+..|.+- | +-+|||+|+..||++.-... ..||+|+++++.++++.
T Consensus 12 p~~~~CpI~~~~m~dP---V-~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---V-RLPSGTVMDRSIILRHLLNS--PTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CTTTBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCGGGCEE
T ss_pred chheECcccCchhcCC---e-ECCCCCEECHHHHHHHHhcC--CCCCCCcCCCChHhcch
Confidence 4579999999999863 3 34599999999999985433 44599999999887776
No 69
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=7.2e-05 Score=60.67 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=46.1
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccc---cCccccCCCCCCCCCCeEEe
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT---KNWKELLTDEPFTKEDLITI 158 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~---k~~~d~v~~~~f~~~DiI~L 158 (506)
...+.||||...|.+..+..++-+|||+|+..|+.++.... ..| |+|..++...||..|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~C--P~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRC--PFCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCC--TTTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCC--CCCCCcccchhHHHH
Confidence 45689999999999876644556899999999999985432 456 999999988775443
No 70
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.38 E-value=0.00022 Score=56.75 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=42.5
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhcc-ccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k-~k~~~d~v~~~~f~~~DiI~ 157 (506)
..++.||||...|.+- |. -+|||+|+..||.+.... ...| |+|..++...+++.
T Consensus 6 ~~~~~C~IC~~~~~~P---v~-~~CgH~fc~~Ci~~~~~~~~~~C--P~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VI-VSTGQTYERSSIQKWLDAGHKTC--PKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EE-ETTTEEEEHHHHHHHHTTTCCBC--TTTCCBCSSCCCEE
T ss_pred cccCCCCCccccccCC---EE-cCCCCeecHHHHHHHHHHCcCCC--CCCcCCCChhhCcc
Confidence 4579999999999763 32 389999999999998543 3345 99999998877665
No 71
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.00039 Score=54.33 Aligned_cols=54 Identities=19% Similarity=0.403 Sum_probs=42.0
Q ss_pred cCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhc---cccCccccCCCCCCCCCCe
Q 010602 96 NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI---KTKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 96 n~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~---k~k~~~d~v~~~~f~~~Di 155 (506)
.....+.||||...|.+ .+.+ +|||+|+..||.++.. ....| |+|..++..+||
T Consensus 16 ~~~~~~~C~IC~~~~~~---~~~~-~CgH~fC~~Ci~~~~~~~~~~~~C--P~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK---PVTI-DCGHNFCLKCITQIGETSCGFFKC--PLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSS---EEEC-TTCCEEEHHHHHHHCSSSCSCCCC--SSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCC---eEEc-CCCChhhHHHHHHHHHcCCCCCCC--CCCCCcCCcccC
Confidence 33567899999999985 2333 9999999999999853 12346 999999998875
No 72
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00034 Score=54.69 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=42.0
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHh---cCCCCCCCCCCCCCCc
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK---YGKHPVTGTPLKLEDL 88 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~---~~~~Pvtg~~l~~kdL 88 (506)
....|+|++..+.+||..+-||+|++..|..|+.. ...||+-+.++...++
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 46789999999999999999999999999999972 3357777666666554
No 73
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.32 E-value=0.00023 Score=60.16 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=43.5
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..+|.||||+..|.+- |. -+|||+|+..||++.-.. +..||+|+++++..|+|.
T Consensus 27 p~~~~CpI~~~~m~dP---V~-~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VR-LPSGTIMDRSIILRHLLN--SPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp STTTBCTTTCSBCSSE---EE-ETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCTTSSEE
T ss_pred cHhhCCcCccCcccCC---eE-CCCCCEEchHHHHHHHHc--CCCCCCCCCCCChhhceE
Confidence 4579999999999753 33 359999999999998543 345699999999888776
No 74
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.31 E-value=3.7e-05 Score=61.23 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=49.8
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHh-------cCCCCCCCCCCCCCCccccccccc
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-------YGKHPVTGTPLKLEDLIPLTFHKN 96 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~-------~~~~Pvtg~~l~~kdLi~l~f~kn 96 (506)
....|+|++..+.+|+..+-||+|++..|..|+.. ...||+-+.++...+|.++....+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 46779999999999999999999999999999986 457888888888877777665544
No 75
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.29 E-value=0.00027 Score=59.51 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=43.5
Q ss_pred CceeecccccccccCceEEEEEecCC-eeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTG-NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G-~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..+|.||||+..|.+= | +-+|| |+|+..||++.-.. +..||+|+++++.+|+|.
T Consensus 20 p~~~~CpI~~~~m~dP---V-~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---V-VLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBCSSE---E-ECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccccCC---e-ECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChhhceE
Confidence 4579999999999753 3 34789 99999999998543 335699999999888775
No 76
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00025 Score=54.70 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=43.3
Q ss_pred ccCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhc-cccCccccCCCCCCCCCCe
Q 010602 95 KNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 95 kn~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~-k~k~~~d~v~~~~f~~~Di 155 (506)
.....++.||||...|.+-.. -+|||+|+..||.+... ....| |+|..+++.+||
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~C--P~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLSSSSPKC--TACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHTTSSCCC--TTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHHhCcCCC--CCCCcCCChhhc
Confidence 334567999999999986533 38999999999999852 23456 999999998876
No 77
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.26 E-value=0.00014 Score=57.88 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=47.6
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEe
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~L 158 (506)
...+.||||...|.+...++ +-+|||+|+..||.+.......| |+|..++...+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~~~~C--P~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVR-QLPCNHLFHDSCIVPWLEQHDSC--PVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEE-ECTTSCEEETTTTHHHHTTTCSC--TTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEE-EeCCCCeecHHHHHHHHHcCCcC--cCcCCccCCcccCCC
Confidence 45689999999998776555 34799999999999986555667 999999999887763
No 78
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=9e-05 Score=58.14 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=45.6
Q ss_pred CCCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCccc
Q 010602 37 LPFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (506)
Q Consensus 37 lpf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~ 90 (506)
..-..|+|++..+.+||.++-||+|++..|..|+.....||+-+.++...+|+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccC
Confidence 456789999999999999999999999999999987777888777776655543
No 79
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00041 Score=56.13 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=45.8
Q ss_pred CCccccCCCCCCCC----ceecCCCceeehhhHHHHHHhc---CCCCCCCCCCCCCCccc
Q 010602 38 PFYCCALTFTPFED----PVCTADGSVFELMSITPYIRKY---GKHPVTGTPLKLEDLIP 90 (506)
Q Consensus 38 pf~~C~LSl~p~~d----PV~t~~G~lf~k~~I~~~L~~~---~~~Pvtg~~l~~kdLi~ 90 (506)
....|+||+..+.+ |++.+-||+|++..|..|+... ..||+-+.++...++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQ 73 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTT
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHH
Confidence 46789999999999 9999999999999999999976 67888888887766543
No 80
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.25 E-value=0.00016 Score=64.30 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=30.6
Q ss_pred ccccCCCCCCCCceecCCCceeehhhHHHHHHh
Q 010602 40 YCCALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~ 72 (506)
..|+||+.++.+||+++-||.||..+|..|+..
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 86 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR 86 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHc
Confidence 369999999999999999999999999999864
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.24 E-value=0.00025 Score=60.90 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=60.6
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHh-cCCCCCCCCCCCCCCccccccc-ccC--CceeecccccccccCce
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFH-KNA--EGEYHCPVLNKVFTEFT 114 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~-~~~~Pvtg~~l~~kdLi~l~f~-kn~--~~~~~CPvt~k~f~~~t 114 (506)
...|+|++.++.+||.++-||+|++..|..|+.. ...||+-+.++...+|++.... .+. .-...||-
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~--------- 93 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPA--------- 93 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCS---------
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCC---------
Confidence 4579999999999999999999999999999997 5689999999988887654221 111 23456763
Q ss_pred EEEEEecCCeeecHHHHHH
Q 010602 115 HIVAVKTTGNVFCFEAIKE 133 (506)
Q Consensus 115 ~iv~ik~~G~V~s~~~v~~ 133 (506)
..|+-++...-++.
T Consensus 94 -----~gC~~~~~~~~~~~ 107 (116)
T 1rmd_A 94 -----QDCNEEVSLEKYNH 107 (116)
T ss_dssp -----TTCCCEEEHHHHHH
T ss_pred -----CCCcchhhHhHHHH
Confidence 25777776665543
No 82
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.21 E-value=0.00018 Score=66.04 Aligned_cols=67 Identities=30% Similarity=0.432 Sum_probs=58.0
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHhcC-CCCCCCCCCCCCCcccccccccC--Cceeecc
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPLKLEDLIPLTFHKNA--EGEYHCP 104 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~-~~Pvtg~~l~~kdLi~l~f~kn~--~~~~~CP 104 (506)
+...|+|++.++.+||.++-||+|++..|..|+.... .||+-+.++...+|++.++..+. .-...||
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~ 86 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECC
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCC
Confidence 4678999999999999999999999999999998765 89999999999999888776653 3356787
No 83
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.19 E-value=0.00035 Score=58.15 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=41.9
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccc----cCccccCCCCC---CCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT----KNWKELLTDEP---FTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~----k~~~d~v~~~~---f~~~DiI~ 157 (506)
..+|.||||+..|.+ -|.+..|||+|+..||.+.-... ....||+++.+ ++..|++.
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 457999999999986 34455699999999999985432 12445995554 77777765
No 84
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.11 E-value=0.00023 Score=60.39 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=33.6
Q ss_pred CccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCC
Q 010602 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHP 77 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~P 77 (506)
...|+||+..+.+||.. +-||+|++..|..|+.....||
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP 54 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCP 54 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCT
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCc
Confidence 56799999999999997 9999999999999998533333
No 85
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.11 E-value=0.0003 Score=64.30 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=31.3
Q ss_pred CccccCCCCCCCCceec-CCCceeehhhHHHHHHh
Q 010602 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRK 72 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~ 72 (506)
...|+||+..+.+||.+ +.||+||+.+|..|+..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh
Confidence 45799999999999988 99999999999999973
No 86
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.09 E-value=0.0004 Score=64.96 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=43.6
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..+|+||||+..|.+ . |. -+|||+|+..||.+.-..... .||+|+++++..|+|+
T Consensus 104 p~~f~CPI~~elm~D--P-V~-~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 104 PDYLCGKISFELMRE--P-CI-TPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CGGGBCTTTCSBCSS--E-EE-CTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEE
T ss_pred cHhhcccCccccCCC--C-eE-CCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcc
Confidence 467999999999986 2 32 389999999999998543222 3599999999888776
No 87
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0003 Score=54.17 Aligned_cols=53 Identities=15% Similarity=0.419 Sum_probs=43.4
Q ss_pred CceeecccccccccCc---eEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~---t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
...+.||||...|.+. .+.+++.+|||+|+.+||.+.......| |+|..+|+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~C--P~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTC--PTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSC--TTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCC--CCCCCccCc
Confidence 4578999999999764 4556678999999999999986555667 999998875
No 88
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.07 E-value=0.00031 Score=51.84 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=42.7
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~ 151 (506)
.+++.||||...|.+....+++.+|||+|..+||.+.......| |+|..++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~C--P~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRC--PLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCC--TTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcC--CCCCCcCC
Confidence 35688999999998766677788999999999999986555666 99987764
No 89
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.04 E-value=0.00085 Score=53.59 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=44.3
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhcc------ccCccccCCCCCCCCCCeEEec
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK------TKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k------~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
...+.||||...|.+-. +-+|||+|+..|+.++... ...| |+|..++...++....
T Consensus 17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~C--P~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNRNTDGKGNC--PVCRVPYPFGNLKPNL 78 (85)
T ss_dssp CTTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSBCTTSCBCC--TTTCCCCCTTCCEECS
T ss_pred ccCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhccCCCCCCCC--CCCCCcCCHHhCCcCH
Confidence 45689999999997642 4579999999999987544 3345 9999999988877644
No 90
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0012 Score=65.00 Aligned_cols=91 Identities=14% Similarity=0.233 Sum_probs=63.0
Q ss_pred eeehhhHHHHHHhcCCCCCCCCC--CCCCCcccccccccCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhcc
Q 010602 60 VFELMSITPYIRKYGKHPVTGTP--LKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK 137 (506)
Q Consensus 60 lf~k~~I~~~L~~~~~~Pvtg~~--l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k 137 (506)
.|..-..+.|+..+..+|+-+.. -.-.||+- .....++.||||...|.+= |.+..|||+|+..||.++...
T Consensus 143 ~~~~lk~~~~i~~~P~~~lPd~~~~~dDDDI~v----~~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~ 215 (267)
T 3htk_C 143 TLKILKVLPYIWNDPTCVIPDLQNPADEDDLQI----EGGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQG 215 (267)
T ss_dssp HHHHHHHHHHHHHCTTBCCCCCSSTTCSSCCCC----CSSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTT
T ss_pred HHHHHHHccccccCCCCCCCCCCCCCCCcccee----cCCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHh
Confidence 45555567788887777664322 12233321 1234579999999999643 445789999999999998544
Q ss_pred ccCccccC--CCCCCCCCCeEE
Q 010602 138 TKNWKELL--TDEPFTKEDLIT 157 (506)
Q Consensus 138 ~k~~~d~v--~~~~f~~~DiI~ 157 (506)
...+.||+ |.+++...|++.
T Consensus 216 ~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 216 YTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CSCEECSGGGCSCEECGGGEEE
T ss_pred CCCCCCCcccccCcCchhhCCc
Confidence 34566799 889998888766
No 91
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.0012 Score=52.90 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=39.3
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~ 151 (506)
...+.||||...|.+- ++-+|||+|+..||.+.......| |+|..++.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~C--P~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRC--YICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBC--SSSCCBCC
T ss_pred CCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcC--CCcCcccc
Confidence 4568999999999762 246899999999999986555666 99999986
No 92
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.94 E-value=0.00063 Score=56.68 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=43.0
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
...+.||||...|.+ -|.+.+|||+|+..||.+.......| |+|..++...+++.
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~C--P~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 20 DDLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQC--PTCCVTVTEPDLKN 74 (99)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBC--TTTCCBCCGGGCEE
T ss_pred CCCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCC--CCCCCcCChhhCCc
Confidence 346899999999986 34445899999999999986555566 99999988765443
No 93
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.94 E-value=0.0014 Score=51.71 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=48.9
Q ss_pred CCCccccccccc--CCceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 85 LEDLIPLTFHKN--AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 85 ~kdLi~l~f~kn--~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
++.|....|..+ ..+...||||...|.+...++ +-+|||+|...||.+.......| |+|..++..
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~-~l~C~H~fh~~Ci~~w~~~~~~C--P~Cr~~~~~ 72 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLR-VLPCNHEFHAKCVDKWLKANRTC--PICRADSGP 72 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEE-EETTTEEEETTHHHHHHHHCSSC--TTTCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEE-EECCCCHhHHHHHHHHHHcCCcC--cCcCCcCCC
Confidence 455555556543 346789999999998776555 45799999999999986555667 999888764
No 94
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.0004 Score=54.35 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=42.6
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
...+.||||...|.+- |. -+|||+|+.+||.+.......| |+|..++...+++.
T Consensus 13 ~~~~~C~IC~~~~~~~---~~-~~CgH~fC~~Ci~~~~~~~~~C--P~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VS-LPCKHVFCYLCVKGASWLGKRC--ALCRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EE-ETTTEEEEHHHHHHCTTCSSBC--SSSCCBCCHHHHSC
T ss_pred CCCCCCccCCcccCCC---EE-ccCCCHHHHHHHHHHHHCCCcC--cCcCchhCHhhccC
Confidence 4568999999999653 33 3799999999999975555667 99999998776544
No 95
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.93 E-value=0.00064 Score=62.03 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=41.5
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhcc-ccCccccCCCCCCCCCCe
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k-~k~~~d~v~~~~f~~~Di 155 (506)
..++.||||...|.+ -|.+.+|||+||..||.+.... ...| |+|..++...+.
T Consensus 52 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~C--P~Cr~~~~~~~~ 105 (165)
T 2ckl_B 52 HSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKEC--PTCRKKLVSKRS 105 (165)
T ss_dssp HHHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBC--TTTCCBCCSGGG
T ss_pred CCCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCC--CCCCCcCCCccc
Confidence 346899999999986 3555699999999999998543 3445 999999975543
No 96
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.0011 Score=50.91 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=41.1
Q ss_pred CCccccCCCCCCCCc-------eecCCCceeehhhHHHHHHhcCCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDP-------VCTADGSVFELMSITPYIRKYGKHPVTGTPLKL 85 (506)
Q Consensus 38 pf~~C~LSl~p~~dP-------V~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~ 85 (506)
....|+|++..+.+| ++.+-||+|+...|.+|+.....||+-+.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 467799999999988 788999999999999999987778877766653
No 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.92 E-value=0.00077 Score=58.38 Aligned_cols=61 Identities=15% Similarity=0.355 Sum_probs=50.6
Q ss_pred CceeecccccccccCc---eEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecC
Q 010602 98 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~---t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqd 160 (506)
.+++.||||...|.+. .+.+++-+|||+|+.+||.+.......| |+|..++...++..+.-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~C--P~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTC--PTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBC--TTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCC--CCCCCcCcccccccccc
Confidence 3568999999999764 3555677999999999999986666677 99999999999887653
No 98
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.90 E-value=0.00067 Score=52.01 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=46.6
Q ss_pred ccccCCCC-CCCCc----eecCCCceeehhhHHHHHHhc-CCCCCCCCCCCCCCccccccc
Q 010602 40 YCCALTFT-PFEDP----VCTADGSVFELMSITPYIRKY-GKHPVTGTPLKLEDLIPLTFH 94 (506)
Q Consensus 40 ~~C~LSl~-p~~dP----V~t~~G~lf~k~~I~~~L~~~-~~~Pvtg~~l~~kdLi~l~f~ 94 (506)
..|+|++. .+.+| ++++-||+|++..|..|+.+. ..||+-+.++...++.++-|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 46999999 88888 567999999999999997753 569999999999888887653
No 99
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.89 E-value=0.00026 Score=61.09 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=39.3
Q ss_pred CccccCCCCCCCCceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 010602 39 FYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l 91 (506)
...|+||+..+.+||.+ +-||+|++..|..|+. ..||+-+.++...+|.++
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 56799999999999998 9999999999999975 345555555544444443
No 100
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.0011 Score=50.51 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHh
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRK 72 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~ 72 (506)
....|+|++..+.+||.++-||+|++..|..|+..
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc
Confidence 46789999999999999999999999999999984
No 101
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.87 E-value=0.0019 Score=51.11 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCccccCCCCCCCCc---eecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccc
Q 010602 38 PFYCCALTFTPFEDP---VCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 38 pf~~C~LSl~p~~dP---V~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l 91 (506)
.-..|+||+..+.+| +..+-||+|+...|.+|+.....||+-+.++...++.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 466899999999876 345899999999999999988889999998888887654
No 102
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.82 E-value=0.0011 Score=57.20 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=46.2
Q ss_pred cccccCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhcccc-CccccCCCCCCCCCCeEE
Q 010602 92 TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK-NWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 92 ~f~kn~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k-~~~d~v~~~~f~~~DiI~ 157 (506)
.|...-...+.||||...|.+- |. -+|||+|+..||.+...... .| |+|..++...+++.
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~C--P~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 10 EFDPPLESKYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRDAGHKC--PVDNEILLENQLFP 70 (118)
T ss_dssp CBSSCCCGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHHCSBC--TTTCCBCCGGGCEE
T ss_pred hhccCCCCCCCCCcCChhhcCe---EE-CCcCChhhHHHHHHHHhhCCCCC--CCCCCCcCHHhccc
Confidence 3445556789999999999764 32 38999999999998754443 56 99999998877653
No 103
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.00063 Score=52.82 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=43.1
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
...+.||||...|.+ ++-+|||+|+.+|+.+.......| |+|..++...|.+.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~C--P~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNC--PICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSC--HHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcC--CCcCCcccCCCccc
Confidence 456899999999987 456899999999999986555667 99999998776543
No 104
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.00096 Score=53.28 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=42.4
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhcc------ccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK------TKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k------~k~~~d~v~~~~f~~~DiI~ 157 (506)
...+.||||...|.+-. +-+|||+|+.+|+.++... ...| |+|..++...|+..
T Consensus 17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~C--P~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPL----SLDCGHSFCQACLTANHKKSMLDKGESSC--PVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCCTTTCSCCSSCB----CCSSSCCBCTTHHHHHHHHHHHTTSCCCC--TTTCCSSCSSSCCC
T ss_pred cCCCCCCCCCcccCCce----eCCCCCHHHHHHHHHHHHHhhcCCCCCcC--CCCCCccCHHhcCc
Confidence 45689999999997632 2389999999999987543 3456 99999999877654
No 105
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.71 E-value=0.0011 Score=55.66 Aligned_cols=54 Identities=11% Similarity=0.289 Sum_probs=43.4
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccc-cCccccCCCCCCCCCCeEE
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~-k~~~d~v~~~~f~~~DiI~ 157 (506)
.++.||||...|.+ -|.+-+|||+|+..||.+..... ..| |+|..++...+++.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~C--P~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQC--PHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBC--TTTCCBCCGGGCEE
T ss_pred CCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCC--CCCCCcCCHHHhHh
Confidence 46899999999975 34447899999999999885444 356 99999998777665
No 106
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.70 E-value=0.002 Score=54.48 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=41.3
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~ 153 (506)
..++.||||...|.+ -|.+.+|||+|+..||.+.......| |+|..++...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~C--P~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYC--PICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBC--TTTCCBSCSS
T ss_pred CCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcC--cCCCcccccc
Confidence 456899999999976 34456999999999999986555566 9999988764
No 107
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0022 Score=50.26 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=41.8
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
..+..||||...|.....++. -+|||+|+..||.+.......| |+|..++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~~~~C--P~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEVRKVC--PLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHHHCSBC--TTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHHcCCcC--CCcCccccc
Confidence 446789999999987766654 4799999999999986555567 999988754
No 108
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.65 E-value=0.003 Score=48.56 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=39.8
Q ss_pred CccccCCCCCCCCc-eecCCCceeehhhHHHHHHhcCCCCCCCCCCC
Q 010602 39 FYCCALTFTPFEDP-VCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (506)
Q Consensus 39 f~~C~LSl~p~~dP-V~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~ 84 (506)
-..|+|++..+.+| ++.+-||+|+...|..|+.....||+-+.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 35799999999998 56699999999999999998888888877664
No 109
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.64 E-value=0.00099 Score=49.09 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=42.2
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~ 151 (506)
++...||||...|.+....+.+..|||+|..+|+.+.......| |+|..++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~C--P~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTC--PLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSC--SSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcC--cCCCCEeE
Confidence 34578999999999877777666799999999999986555666 99987763
No 110
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.63 E-value=0.00099 Score=65.01 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=42.7
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
...|.||||...|.+- | +-+|||+||..||.+.-..... .||+|+.+++..++|+
T Consensus 206 ~~~~~c~i~~~~~~dP---v-~~~~gh~f~~~~i~~~~~~~~~-~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---C-ITPSGITYDRKDIEEHLQRVGH-FNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBCSSE---E-ECSSCCEEETTHHHHHHHHTCS-SCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHhcCC---e-ECCCCCEECHHHHHHHHHHCCC-CCcCCCCCCchhcCcc
Confidence 3578999999999753 3 3569999999999988533222 2499999999888775
No 111
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.59 E-value=0.00067 Score=53.73 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=40.9
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhcc-------ccCccccCCCCCCCCCCeE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-------TKNWKELLTDEPFTKEDLI 156 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k-------~k~~~d~v~~~~f~~~DiI 156 (506)
..++.||||...|.+-. +-+|||+|+..||.++... ...| |+|..++...|+.
T Consensus 10 ~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~C--P~Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL----SLDCGHSLCRACITVSNKEAVTSMGGKSSC--PVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSCC----CCSSSCCCCHHHHSCCCCCCSSSCCCCCCC--SSSCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCee----ECCCCCHHHHHHHHHHHHhcccCCCCCCcC--CCCCCcCCHhhCC
Confidence 45789999999997632 2389999999999987443 2345 9999999876644
No 112
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.58 E-value=0.0011 Score=52.27 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=41.5
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccc--cCccccCCCCCCCCCCeE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT--KNWKELLTDEPFTKEDLI 156 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~--k~~~d~v~~~~f~~~DiI 156 (506)
..++.||||...|.+- |.+..|||+|+..||.+..... ..| |+|..++...|.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~C--P~Cr~~~~~~~~~ 68 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTC--PTCHQNDVSPDAL 68 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCC--SSSCCSSCCTTTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcC--CCCCCcCCCcccc
Confidence 4568999999999863 3344499999999999985433 356 9999988776654
No 113
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.56 E-value=0.0026 Score=49.16 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=41.3
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
.....||||...|.....++ +-+|||+|+..||.+.......| |+|..++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~~~~C--P~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVR-RLPCMHLFHQVCVDQWLITNKKC--PICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEE-ECTTSCEEEHHHHHHHHHHCSBC--TTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEE-EeCCCCHHHHHHHHHHHHcCCCC--cCcCccccC
Confidence 45689999999997665544 45799999999999886555667 999887754
No 114
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.51 E-value=0.004 Score=45.67 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=37.8
Q ss_pred CccccCCCCCCCC----ceecCCCceeehhhHHHHHHhcCCCCCCCCCC
Q 010602 39 FYCCALTFTPFED----PVCTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (506)
Q Consensus 39 f~~C~LSl~p~~d----PV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l 83 (506)
-..|+|+++.+.+ +++.+-||+|....|.+|+.....||+-+.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 4579999999966 77779999999999999999877777766554
No 115
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.49 E-value=0.0033 Score=51.68 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=41.9
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
..+..||||...|.....++. -+|||+|+..||.+.......| |+|..++..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~~~C--P~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQKSGTC--PVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHTTTCBC--TTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHHcCCcC--cCcCccCCC
Confidence 456899999999988776655 4599999999999986556667 999887753
No 116
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.40 E-value=0.0032 Score=51.49 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=37.5
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~ 151 (506)
..++.||||...|.+- |.+..|||+|+..||.+.........+|+|..++.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4568999999999853 33433999999999998754333223399999984
No 117
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.40 E-value=0.0024 Score=47.30 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHH
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIR 71 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~ 71 (506)
....|+|++..+.+|+.++-||+|++..|..|+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHH
Confidence 4678999999999999999999999999999965
No 118
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.35 E-value=0.0026 Score=56.36 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=38.2
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
.++.||||...|.+- | +-+|||+|+..||.+.......| |+|..++..
T Consensus 52 ~~~~C~iC~~~~~~~---~-~~~CgH~fc~~Ci~~~~~~~~~C--P~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---V-TLNCAHSFCSYCINEWMKRKIEC--PICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---E-EETTSCEEEHHHHHHHTTTCSBC--TTTCCBCCC
T ss_pred ccCCCcccCcccCCc---e-ECCCCCCccHHHHHHHHHcCCcC--CCCCCcCCC
Confidence 357899999999752 3 34899999999999986556667 999988753
No 119
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.32 E-value=0.0019 Score=67.15 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=43.5
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHH-hcCCCCCCCCCCCCCCcccc
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIR-KYGKHPVTGTPLKLEDLIPL 91 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~-~~~~~Pvtg~~l~~kdLi~l 91 (506)
+..|+||+..+.+||+++.||+||..+|..|+. ....||+.+.++...+++.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 468999999999999999999999999999998 45667777666665555443
No 120
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.26 E-value=0.0015 Score=55.22 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=41.2
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhcccc---CccccCCCCCCCCCCeEE
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK---NWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k---~~~d~v~~~~f~~~DiI~ 157 (506)
..+.||||...|.+-.. -+|||+|+..||.+...... .| |+|..++...+++.
T Consensus 20 ~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~~~C--P~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 20 KILECPICLELIKEPVS----TKCDHIFCKFCMLKLLNQKKGPSQC--PLCKNDITKRSLQE 75 (112)
T ss_dssp HHTSCSSSCCCCSSCCB----CTTSCCCCSHHHHHHHHSSSSSCCC--TTTSCCCCTTTCBC
T ss_pred CCCCCcccChhhcCeEE----CCCCCHHHHHHHHHHHHhCCCCCCC--cCCCCcCCHhhcCc
Confidence 46899999999976422 48999999999999854322 46 99999998877654
No 121
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.15 E-value=0.0014 Score=58.72 Aligned_cols=46 Identities=9% Similarity=0.085 Sum_probs=37.7
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHhcC-CCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYG-KHPVTGTPL 83 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~-~~Pvtg~~l 83 (506)
.-..|+||+..+.+||.++-||+|++..|..|+.... .||+-+.++
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3567999999999999999999999999999997543 466554443
No 122
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.05 E-value=0.0038 Score=54.10 Aligned_cols=50 Identities=6% Similarity=0.135 Sum_probs=38.1
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
...+.||||...|.+- |.+ +|||+|+..||.+... .....+|+|..++..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITT-VCQHNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEe-eCCCcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 4568999999999853 323 8999999999998743 222234999999976
No 123
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.03 E-value=0.0027 Score=54.36 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=41.9
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhcc-ccCccccCCCCCCCCCCeE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDLI 156 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k-~k~~~d~v~~~~f~~~DiI 156 (506)
..++.||||...|.+- |. -+|||+|+..||.+.... ...| |+|..++...|++
T Consensus 21 ~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~C--P~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VE-TSCKHLFCRICILRCLKVMGSYC--PSCRYPCFPTDLE 74 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHTCSBC--TTTCCBCCGGGCB
T ss_pred cCCCCCCCCCcHhcCc---EE-cCCCCcccHHHHHHHHhHCcCcC--CCCCCCCCHhhcc
Confidence 3568999999999753 22 489999999999988543 3456 9999999887765
No 124
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.02 E-value=0.0081 Score=46.05 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=38.9
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCC
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~ 151 (506)
....||||...|.+. +++.+|||+|+..|+.+.......| |+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~C--P~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTC--PLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCST--TTTCCCCC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcC--cCCChhhH
Confidence 457899999998753 2467899999999999876555667 99998886
No 125
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.98 E-value=0.0061 Score=47.90 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=38.1
Q ss_pred CCccccCCCCCCCCc---eecCCCceeehhhHHHHHHhcCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDP---VCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (506)
Q Consensus 38 pf~~C~LSl~p~~dP---V~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~ 84 (506)
.-..|+|++..+.++ ++.+-||+|....|.+||..+..||+-+.++.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 346799999999887 56689999999999999998766666655543
No 126
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.89 E-value=0.0075 Score=45.64 Aligned_cols=37 Identities=22% Similarity=0.561 Sum_probs=29.6
Q ss_pred cCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhc
Q 010602 96 NAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI 136 (506)
Q Consensus 96 n~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~ 136 (506)
.-..++.||||...|.+- |.+ +|||+|+..||.++..
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHH
T ss_pred hCccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHH
Confidence 345678999999999863 333 9999999999999853
No 127
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.88 E-value=0.0069 Score=55.32 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=47.1
Q ss_pred ccccccCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhcccc-CccccCCCCCCCCCCeEE
Q 010602 91 LTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK-NWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 91 l~f~kn~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k-~~~d~v~~~~f~~~DiI~ 157 (506)
+.|...-...|.||||...|.+- |. -+|||+|+..||.++..... .| |+|..++...+++.
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~p---v~-~~CgH~fC~~Ci~~~~~~~~~~C--P~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 9 VEFDPPLESKYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRDAGHKC--PVDNEILLENQLFP 70 (170)
T ss_dssp SEESSCCCGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHHCSBC--TTTCCBCCGGGCEE
T ss_pred hhhccCCCCCCCCCCCChhhcCc---EE-CCCCCHHHHHHHHHHHHhCCCCC--CCCccCcchhhhhh
Confidence 34666667789999999999764 32 48999999999999854332 56 99999998877654
No 128
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=95.88 E-value=0.019 Score=44.09 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=37.7
Q ss_pred CCccccCCCCCCC---CceecCCCceeehhhHHHHHHhcCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (506)
Q Consensus 38 pf~~C~LSl~p~~---dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~ 84 (506)
.-..|+|++..+. .+++.+-||+|....|.+|+.....||+-+.++.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 4567999999885 4566799999999999999998777776655544
No 129
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=95.84 E-value=0.0085 Score=50.89 Aligned_cols=60 Identities=7% Similarity=0.038 Sum_probs=44.0
Q ss_pred ceeecccccccccCce--------------EEEEEecCCeeecHHHHHHHhc-----cccCccccCCCCCCCCCCeEEec
Q 010602 99 GEYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNI-----KTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t--------------~iv~ik~~G~V~s~~~v~~l~~-----k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
.+..||||...|.... .++.+-+|||+|+..||.+... ....| |+|...|... .-.|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~C--P~CR~~~~~~--~g~q 99 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQC--PSCKTIYGEK--TGTQ 99 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBC--TTTCCBSSSC--SSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcC--CCCCCccCCC--CCCC
Confidence 3468999999996532 4566789999999999998852 23456 9999999754 3445
Q ss_pred CCC
Q 010602 160 NPN 162 (506)
Q Consensus 160 dp~ 162 (506)
+|.
T Consensus 100 p~g 102 (114)
T 1v87_A 100 PWG 102 (114)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 130
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.79 E-value=0.0073 Score=54.52 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=39.4
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhcccc-CccccCCCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK-NWKELLTDEPFTKED 154 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k-~~~d~v~~~~f~~~D 154 (506)
...+.||||...|.+- | +-+|||+||..||.+...... .| |+|..++...+
T Consensus 76 ~~~~~C~IC~~~~~~p---v-~~~CgH~fC~~Ci~~~~~~~~~~C--P~Cr~~~~~~~ 127 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP---V-TTECFHNVCKDCLQRSFKAQVFSC--PACRHDLGQNY 127 (150)
T ss_dssp HHHTBCTTTSSBCSSE---E-ECTTSCEEEHHHHHHHHHTTCCBC--TTTCCBCCTTC
T ss_pred ccCCEeecCChhhcCC---E-EcCCCCchhHHHHHHHHHhCCCcC--CCCCccCCCCC
Confidence 3468999999999753 2 248999999999999854322 45 99999998763
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.77 E-value=0.0088 Score=46.70 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCccccCCCCCCCCceec---CCCceeehhhHHHHHHhcCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCT---ADGSVFELMSITPYIRKYGKHPVTGTPL 83 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t---~~G~lf~k~~I~~~L~~~~~~Pvtg~~l 83 (506)
....|+|++..+.+|... +-||+|....|.+|+.....||+-+.++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 366799999999877544 8899999999999999877777766554
No 132
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.73 E-value=0.008 Score=44.06 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=36.4
Q ss_pred CccccCCCCCCCC---ceecC-CCceeehhhHHHHHHhcCCCCCCCCCC
Q 010602 39 FYCCALTFTPFED---PVCTA-DGSVFELMSITPYIRKYGKHPVTGTPL 83 (506)
Q Consensus 39 f~~C~LSl~p~~d---PV~t~-~G~lf~k~~I~~~L~~~~~~Pvtg~~l 83 (506)
-..|+|+++.+.+ ++..+ -||+|....|.+|+.....||+-+.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 3579999999987 77775 899999999999998766666665544
No 133
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=95.70 E-value=0.0066 Score=49.86 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=36.8
Q ss_pred CccccCCCCCCCC---ceecCCCceeehhhHHHHHHhcCCCCCCCCCC
Q 010602 39 FYCCALTFTPFED---PVCTADGSVFELMSITPYIRKYGKHPVTGTPL 83 (506)
Q Consensus 39 f~~C~LSl~p~~d---PV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l 83 (506)
-..|+||+..+.+ ++..+-||+|+...|.+||..+..||+-..++
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 4579999999887 77779999999999999998766666655544
No 134
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.61 E-value=0.0063 Score=63.28 Aligned_cols=54 Identities=9% Similarity=0.219 Sum_probs=43.5
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhc-cccCccccCCCCCCCCCCeEEec
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~-k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
...||||...+.+ +++-+|||+||..|+.+... ....| |+|..++...++|.+.
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~C--P~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGC--PFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBC--TTTCCBCCEEEECSCC
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCC--CCCCCccCCceeEecC
Confidence 3799999988854 34679999999999998754 34566 9999999998887765
No 135
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.57 E-value=0.0027 Score=54.27 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=40.6
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeeccccccccc
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFT 111 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~ 111 (506)
...|+||+..+.+||..+-||+|++..|..|+.. +...||+|++.+.
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------------------------~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--------------------------ASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT--------------------------TTSBCTTTCCBCH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH--------------------------CcCCCCCCCcccC
Confidence 5679999999999999999999999999998752 1367999998886
No 136
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=95.44 E-value=0.011 Score=50.28 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCccccCCCCCCCCce------------------ecCCCceeehhhHHHHHHh
Q 010602 38 PFYCCALTFTPFEDPV------------------CTADGSVFELMSITPYIRK 72 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV------------------~t~~G~lf~k~~I~~~L~~ 72 (506)
+-+.|+||+.+|.+|+ +.+-||+|....|.+||..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~ 76 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHc
Confidence 3458999999998876 5688999999999999963
No 137
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.39 E-value=0.0026 Score=54.68 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=39.2
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCe
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 155 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~Di 155 (506)
.++.||||...|.+- |.+.+|||+|+..||.+... ..| |+|..++...|+
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~C--P~Cr~~~~~~~~ 70 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGC--PVCYTPAWIQDL 70 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBC--SSSCCBCSCSSC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCC--cCCCCcCccccc
Confidence 468999999999753 44458999999999998742 456 999999866554
No 138
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.32 E-value=0.0029 Score=49.00 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=37.9
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLE 86 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~k 86 (506)
....|+|++..+.+ ++.+-||+|+...|.+|+.....||+-+.++...
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 35689999999999 8889999999999999987555555554444433
No 139
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.31 E-value=0.019 Score=43.96 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=40.5
Q ss_pred ceeecccccccccCceEEEEEecCCee-ecHHHHHHHhccccCccccCCCCCCCCCCeEEe
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 158 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V-~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~L 158 (506)
....|+||+..+.+. +++..+|||+ ++++|+.++....+.| |+|..++. ++|.+
T Consensus 6 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~C--PiCR~~i~--~~i~i 60 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASC--PICKKEIQ--LVIKV 60 (63)
T ss_dssp GGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBC--TTTCCBCC--EEEEE
T ss_pred cCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcC--CCcCchhh--ceEEE
Confidence 457899999876543 3445799998 9999999986544556 99999984 45554
No 140
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.24 E-value=0.0085 Score=48.18 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=38.4
Q ss_pred CCccccCCCCCCCC--------------ceec-CCCceeehhhHHHHHHhcCCCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFED--------------PVCT-ADGSVFELMSITPYIRKYGKHPVTGTPLKLE 86 (506)
Q Consensus 38 pf~~C~LSl~p~~d--------------PV~t-~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~k 86 (506)
.-+.|+|+++++.+ +++. +-||+|....|.+||..+.+||+-+.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 34569999999987 4444 5899999999999999877777776665543
No 141
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.10 E-value=0.0099 Score=47.78 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=38.2
Q ss_pred eeccccccccc-----------CceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCC
Q 010602 101 YHCPVLNKVFT-----------EFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (506)
Q Consensus 101 ~~CPvt~k~f~-----------~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~D 154 (506)
-.|+||...|. +...++++-+|||+|..+||.+-......| |+|..+|...+
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~C--P~CR~~~~~~~ 78 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRC--PLCQQDWVVQR 78 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBC--TTTCCBCCEEE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCC--CCcCCCcchhh
Confidence 34666666664 344566666799999999999986555667 99998886544
No 142
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.03 E-value=0.03 Score=42.98 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=40.3
Q ss_pred ceeecccccccccCceEEEEEecCCee-ecHHHHHHHhccccCccccCCCCCCCCCCeEEec
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 159 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V-~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lq 159 (506)
.+..|+||...+.+. +++..+|||+ ++++|+.++....+.| |+|..++. ++|.+.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~C--PiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRNKPC--PVCRQPIQ--MIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHTTCCC--TTTCCCCC--EEEEEE
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHcCCcC--CCcCcchh--ceEeee
Confidence 456899999877643 2223499999 8999999986544556 99999984 566553
No 143
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.99 E-value=0.016 Score=42.71 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=27.7
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHH
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKEL 134 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l 134 (506)
...+.||||...|.+- ++-+|||+|+.+||.+.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHH
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHH
Confidence 4568999999999874 23479999999999997
No 144
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=94.77 E-value=0.014 Score=46.85 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=41.3
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..++.||||...|+..-..+.--+|||.|+..|+.++.. .....+|+|-++|...+++.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~-~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT-DENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT-SSCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh-cCCCCCCCCCCccCCCchhh
Confidence 456899999998853221111114999999999999842 22334499999999887753
No 145
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=94.57 E-value=0.011 Score=50.50 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=35.9
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhcc-ccCccccCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFT 151 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k-~k~~~d~v~~~~f~ 151 (506)
..++.||||...|.+- |.+ +|||+|+..||.+.... ...| |+|..++.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~C--P~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEKASLCC--PFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCTTTSBC--TTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhHCcCCC--CCCCcccC
Confidence 3468999999999753 323 89999999999987433 2345 88887774
No 146
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=94.56 E-value=0.022 Score=48.55 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=37.1
Q ss_pred CccccCCCCCCCCc-----------------ee-cCCCceeehhhHHHHHHhcCCCCCCCCCCC
Q 010602 39 FYCCALTFTPFEDP-----------------VC-TADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (506)
Q Consensus 39 f~~C~LSl~p~~dP-----------------V~-t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~ 84 (506)
-+.|+||++.+.+| ++ .+-||+|....|.+||..+.+||+-..+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 46799999999977 22 478999999999999998777777666543
No 147
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.35 E-value=0.02 Score=51.07 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=39.5
Q ss_pred ccCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCC
Q 010602 95 KNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 153 (506)
Q Consensus 95 kn~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~ 153 (506)
..-..+|.||||...|.+- |. -+|||+|+..||.++.. .....+|+|..++..+
T Consensus 26 ~~l~~~~~C~IC~~~~~~p---v~-~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRP---FQ-AQCGHRYCSFCLASILS-SGPQNCAACVHEGIYE 79 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHGG-GSCEECHHHHHTTCCC
T ss_pred ccCCcCcCCCCCChhhcCc---EE-CCCCCccCHHHHHHHHh-cCCCCCCCCCCccccc
Confidence 4456789999999999765 32 48999999999999853 3322339998765433
No 148
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.19 E-value=0.038 Score=44.30 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=41.5
Q ss_pred eeecccccccccCceEEEEEecCCee-ecHHHHHHHhccccCccccCCCCCCCCCCeEEecCCCCcccccccc
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLE 171 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V-~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqdp~~~~~~~~~~ 171 (506)
+..|+||...+.+ +++.+|||+ |+..|+..+ ..| |+|..++.. +|.+.-|.+....+|.+
T Consensus 18 ~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~----~~C--P~Cr~~i~~--~~~i~~p~~~~~~~~~~ 78 (79)
T 2yho_A 18 AMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL----QSC--PVCRSRVEH--VQHVYLPTHTSLLNLTV 78 (79)
T ss_dssp HTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC----SBC--TTTCCBCCE--EEECBCTTCCC------
T ss_pred CCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc----CcC--CCCCchhhC--eEEEEeCcchhhhhhhc
Confidence 4689999877654 345699999 999999876 256 999999975 57766676655555443
No 149
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.12 E-value=0.018 Score=45.42 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=36.5
Q ss_pred CceeecccccccccCceEEEEEecCCee-ecHHHHHHHhccccCccccCCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKE 153 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V-~s~~~v~~l~~k~k~~~d~v~~~~f~~~ 153 (506)
..++.||||+..+.+ +++-+|||+ |+.+|+..+ ..| |+|..++...
T Consensus 23 ~~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~C--P~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----DKC--PMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC----SBC--TTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC----CCC--ccCCceecCc
Confidence 346899999988865 235689999 999999865 457 9999998764
No 150
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.00 E-value=0.025 Score=42.08 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=33.2
Q ss_pred CCccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLK 84 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~ 84 (506)
....|+|++..+.+|++.+-||+|++..|..| ...||+-+.++.
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 45679999999999999999999999988762 234444444433
No 151
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=93.78 E-value=0.018 Score=45.43 Aligned_cols=31 Identities=10% Similarity=-0.041 Sum_probs=28.1
Q ss_pred CccccCCCCCCCCceecCCCce-eehhhHHHH
Q 010602 39 FYCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~l-f~k~~I~~~ 69 (506)
-..|+|++..+.+||..+-||+ |+...+..|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC
Confidence 3579999999999999999999 999998776
No 152
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=92.72 E-value=0.71 Score=42.78 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=65.2
Q ss_pred eEEEEEecCee--eEEEEcCCCChhHHHHHHHHH--hcc----ccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCc
Q 010602 349 GYVQLHTTHGD--LNIELHCDITPRSCENFITLC--ERG----YYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK 420 (506)
Q Consensus 349 ~~v~l~T~~G~--I~ieL~~d~aP~t~~NF~~L~--~~g----~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~ 420 (506)
.|++|....+. ++.+|..+.||+||+.|+++. ++. .|-|-.++-.++.| .-.+ .+
T Consensus 22 r~i~itl~~~g~~~~A~Lldd~APkTcaA~~~~LP~~~~viHarwSGeeVy~~lp~f-------~~~~----------~g 84 (188)
T 3kop_A 22 RYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAF-------APKE----------PG 84 (188)
T ss_dssp CEEEEEETTTTEEEEEEECTTTSHHHHHHHHHHCCEEEECEECSSSSSEEEEEEECC-------SSSC----------CC
T ss_pred eEEEEEEecCCeEEEEEEccccChHHHHHHHHhCCCCcceEEEEEecceEEEECCcc-------cccC----------CC
Confidence 57777766654 688999999999999999975 111 14444443333332 1111 12
Q ss_pred ccccccCCCCCccEEEEe---c---C----C--------CCCCCceEEEEeCCCC--------CCCCCCcEEEEEEcCHH
Q 010602 421 DEVNSKLLHSGRGVVSMA---N---S----G--------PHTNGSQFFILYKSAT--------HLNYKHTVFGGVVGGLT 474 (506)
Q Consensus 421 dE~~~~l~h~~~G~lsma---n---~----g--------~~t~~SqFfItl~~~~--------~LDgk~tVFGrVv~G~d 474 (506)
.| +.-.+..+|-|++- . . | ......++.|-|+.+. ||-| .||++|++|+|
T Consensus 85 ~E--N~T~~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpG--N~F~TIveGle 160 (188)
T 3kop_A 85 AE--NTTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPG--NVFATIVEGLD 160 (188)
T ss_dssp SC--SEESSCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCE--EEEEEEEESHH
T ss_pred cC--CCCCCCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecC--cEEEEEecCHH
Confidence 22 12234457777653 1 0 1 1112357788887654 3444 58999999999
Q ss_pred HHHHhh
Q 010602 475 TLAAME 480 (506)
Q Consensus 475 vL~~I~ 480 (506)
-|.++.
T Consensus 161 ~la~~c 166 (188)
T 3kop_A 161 EMAAAC 166 (188)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 153
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.64 E-value=0.051 Score=44.56 Aligned_cols=36 Identities=14% Similarity=0.320 Sum_probs=29.1
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHh
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELN 135 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~ 135 (506)
..+.||||...|... .++.+.+|||.|+.+|+++..
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp SBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHH
T ss_pred CCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHH
Confidence 468999999988754 445566899999999999874
No 154
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=92.51 E-value=0.24 Score=44.90 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=62.8
Q ss_pred eEEEEEecCeeeEEEEcCCCChhHHHHHHHHHh--c--cccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCcc-cc
Q 010602 349 GYVQLHTTHGDLNIELHCDITPRSCENFITLCE--R--GYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKD-EV 423 (506)
Q Consensus 349 ~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~~--~--g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~d-E~ 423 (506)
..++|.-....+.++|+.+.||+||..|+++.= . ..|-+-.++ .+|- .+.- |
T Consensus 30 ~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~E~y~-~lp~---------------------~l~~~e- 86 (153)
T 2nnz_A 30 MRLRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYF-TTQV---------------------AVEKEE- 86 (153)
T ss_dssp CCEEEEETTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETTEEEE-CCSC---------------------CCCCSS-
T ss_pred eEEEEEECCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCCcEEE-ECCC---------------------CCCCCC-
Confidence 446777777889999999999999999999751 1 112211111 0010 0111 1
Q ss_pred cccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCC------CCcEEEEEEcCHHHHHHh
Q 010602 424 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY------KHTVFGGVVGGLTTLAAM 479 (506)
Q Consensus 424 ~~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDg------k~tVFGrVv~G~dvL~~I 479 (506)
+. -.....|-|+.-..+. .|-|-|++.|...+ .-.+||+|++|++.|..+
T Consensus 87 n~-~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 87 NS-KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp CC-BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred CC-cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 11 1234578887765433 48888888754332 257899999998777655
No 155
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=92.48 E-value=0.082 Score=42.32 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=36.6
Q ss_pred CCccccCCCCCCC--CceecC--CCceeehhhHHHHHHh-cCCCCCCCCCCCCCCcc
Q 010602 38 PFYCCALTFTPFE--DPVCTA--DGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLI 89 (506)
Q Consensus 38 pf~~C~LSl~p~~--dPV~t~--~G~lf~k~~I~~~L~~-~~~~Pvtg~~l~~kdLi 89 (506)
.-..|+|+++|+. +++..+ -||.|++..|..++.. ...||+-++++...+++
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 3567999999994 556554 8999999999988642 24566666555555443
No 156
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=92.35 E-value=0.024 Score=49.19 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCce-----------------e-cCCCceeehhhHHHHHHhcCCCCCCCCCCCC
Q 010602 40 YCCALTFTPFEDPV-----------------C-TADGSVFELMSITPYIRKYGKHPVTGTPLKL 85 (506)
Q Consensus 40 ~~C~LSl~p~~dPV-----------------~-t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~ 85 (506)
+.|+||+..+.+|. + .+-||+|....|.+||..+..||+-+.+..+
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 78999999998853 2 2679999999999999987777776665443
No 157
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.34 E-value=0.088 Score=40.90 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=39.8
Q ss_pred CceeecccccccccCceEEEEEecCCee-ecHHHHHHHhccccCccccCCCCCCCCCCeEEecCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 161 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V-~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqdp 161 (506)
.....|+||+..+.+ +++.||||+ |++.|+..+ ..| |+|..++.. +|.|..|
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~----~~C--P~CR~~i~~--~~~i~~~ 65 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKYF----QQC--PMCRQFVQE--SFALSGP 65 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHHC----SSC--TTTCCCCCC--EECCCSS
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhcC----CCC--CCCCcchhc--eEEeecC
Confidence 346789999876643 567899999 999999965 467 999998864 5665544
No 158
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=92.30 E-value=0.12 Score=39.42 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=38.7
Q ss_pred CCccccCCCCCCCCceec--CCCce-eehhhHHHHHHhcCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCT--ADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t--~~G~l-f~k~~I~~~L~~~~~~Pvtg~~l 83 (506)
.-..|.+++....++++. +-||+ |+.+.+..|....+.||+-+.++
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 345799999999999987 99999 89999999998766777776655
No 159
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=91.90 E-value=0.053 Score=42.63 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=35.3
Q ss_pred ceeecccccccccCceEEEEEecCCee-ecHHHHHHHhccccCccccCCCCCCCC
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V-~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
.+..||||...+.+ .| +-+|||+ |+..|+.++ ..| |+|..+++.
T Consensus 23 ~~~~C~iC~~~~~~---~~-~~pCgH~~~C~~C~~~~----~~C--P~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IV-FVPCGHLVTCKQCAEAV----DKC--PMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EE-EETTCCBCCCHHHHTTC----SBC--TTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EE-EcCCCChhHHHHhhhcC----ccC--CCcCcCccC
Confidence 45789999988754 33 4499999 999999886 567 999998864
No 160
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.79 E-value=0.033 Score=41.39 Aligned_cols=46 Identities=7% Similarity=0.053 Sum_probs=35.4
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
...+.||||...|.+- ++-+|||+|+..|+.+ ....| |+|..++..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~---~~~~C--P~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA---SGMQC--PICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS---SSSSC--SSCCSSSSC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc---CCCCC--CcCCcEeec
Confidence 4568899999999753 3457999999999876 23456 999888763
No 161
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.55 E-value=0.16 Score=42.74 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=40.6
Q ss_pred eecccccccccCceEEEEEecCCeeecHHHHHHHhc-cccCccccCCCCCCCCCCeEE
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~-k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..||.|...|.-.-+ +-||+|||+++|+.+... +.+.| |.|.+++.+-+.+.
T Consensus 2 hfC~~C~~Pi~iygR---mIPCkHvFCydCa~~~~~~~~k~C--p~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGR---MIPCKHVFCYDCAILHEKKGDKMC--PGCSDPVQRIEQCT 54 (101)
T ss_dssp CBCTTTCSBCSEEEE---EETTCCEEEHHHHHHHHHTTCCBC--TTTCCBCSEEEEEE
T ss_pred eecCccCCCeEEEee---eccccccHHHHHHHHHHhccCCCC--cCcCCeeeeeEEec
Confidence 369999999875544 458999999999998753 35778 99999997766554
No 162
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=91.36 E-value=0.062 Score=55.01 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=28.1
Q ss_pred CccccCCCCCCCCceecCCCce-eehhhHHHH
Q 010602 39 FYCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~l-f~k~~I~~~ 69 (506)
-..|+||+..+.+||..+-||+ ||..++..|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL 326 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcC
Confidence 4579999999999999999999 999998754
No 163
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=91.18 E-value=0.17 Score=38.49 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=36.9
Q ss_pred CccccCCCCCCCCceec--CCCce-eehhhHHHHHHhcCCCCCCCCCC
Q 010602 39 FYCCALTFTPFEDPVCT--ADGSV-FELMSITPYIRKYGKHPVTGTPL 83 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t--~~G~l-f~k~~I~~~L~~~~~~Pvtg~~l 83 (506)
-..|.+++....++++. +-||+ |+.+.+..|....+.||+-+.++
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 35799999999999887 99998 99999999887655666665554
No 164
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=90.75 E-value=0.16 Score=43.12 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=45.4
Q ss_pred CCCCCCcccccccccCCceeecccccccccCce--------------EEEEEecCCeeecHHHHHHHhccccCccccCCC
Q 010602 82 PLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (506)
Q Consensus 82 ~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~t--------------~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~ 147 (506)
.++++.+-.+-.-.-+...-.|+||...|...- -.+++-+|||+|...||.+.......| |+|.
T Consensus 19 r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~C--P~Cr 96 (106)
T 3dpl_R 19 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC--PLDN 96 (106)
T ss_dssp SEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBC--SSSC
T ss_pred ceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcC--cCCC
Confidence 344444433333332334557999998887541 135567899999999999975555567 9999
Q ss_pred CCCC
Q 010602 148 EPFT 151 (506)
Q Consensus 148 ~~f~ 151 (506)
.+|.
T Consensus 97 ~~~~ 100 (106)
T 3dpl_R 97 REWE 100 (106)
T ss_dssp SBCC
T ss_pred Ccce
Confidence 8874
No 165
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.47 E-value=0.7 Score=37.02 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=36.6
Q ss_pred CCccccCCCCCC--CCceecCC-----CceeehhhHHHHHHhcC--CCCCCCCCCCCC
Q 010602 38 PFYCCALTFTPF--EDPVCTAD-----GSVFELMSITPYIRKYG--KHPVTGTPLKLE 86 (506)
Q Consensus 38 pf~~C~LSl~p~--~dPV~t~~-----G~lf~k~~I~~~L~~~~--~~Pvtg~~l~~k 86 (506)
.-..|+|++..+ .+|++.+- +|.|-...|.+||...+ .||+-+.++.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 456899999877 46776654 49999999999999764 566666555443
No 166
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.84 E-value=0.3 Score=38.21 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=26.4
Q ss_pred CccccCCCCCCCCceecCCCce-eehhhHH
Q 010602 39 FYCCALTFTPFEDPVCTADGSV-FELMSIT 67 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~l-f~k~~I~ 67 (506)
...|+|++..+.+||..+-||+ |+...+.
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHH
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhh
Confidence 4469999999999999999999 9999984
No 167
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.13 E-value=0.22 Score=50.98 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=35.3
Q ss_pred ceeecccccccccCceEEEEEecCCee-ecHHHHHHHhccccCccccCCCCCCCC
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 152 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V-~s~~~v~~l~~k~k~~~d~v~~~~f~~ 152 (506)
.+..||||...|.+ .|. -+|||+ ||..|+..+ ..| |+|..+++.
T Consensus 294 ~~~~C~IC~~~~~~---~v~-lpCgH~~fC~~C~~~~----~~C--P~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVF-IPCGHLVVCQECAPSL----RKC--PICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEE-ETTCCEEECTTTGGGC----SBC--TTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEE-cCCCChhHhHHHHhcC----CcC--CCCCCCccC
Confidence 45899999988853 343 499999 999999976 457 999999864
No 168
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=83.99 E-value=0.68 Score=47.63 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=39.2
Q ss_pred ccccCCCCCCCCceec-CCCce--eehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeecccccccccCc
Q 010602 40 YCCALTFTPFEDPVCT-ADGSV--FELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEF 113 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t-~~G~l--f~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~~ 113 (506)
..||||+.+|..||=. ..-|+ ||+++++.+... .+.|.||||.+.+.-.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~-------------------------~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ-------------------------IPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH-------------------------SCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhc-------------------------CCceeCCCCCcccCHH
Confidence 4699999999999975 44565 999999987653 3579999999887643
No 169
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=83.54 E-value=1.1 Score=37.53 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=44.0
Q ss_pred CCccccCCCCCCCCceec--CC----CceeehhhHHHHHHhcCCCCCCCCCCCCCCccc
Q 010602 38 PFYCCALTFTPFEDPVCT--AD----GSVFELMSITPYIRKYGKHPVTGTPLKLEDLIP 90 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t--~~----G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~ 90 (506)
.+..|||+|..-+.-|.- .. =.|||+.++.+.+..+..+|++++|++..-+|.
T Consensus 26 e~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 84 (102)
T 2kkx_A 26 EAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVK 84 (102)
T ss_dssp GGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEEC
T ss_pred HHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEec
Confidence 367899999998876653 11 249999999999999999999999999887764
No 170
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.58 E-value=0.96 Score=36.76 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=29.9
Q ss_pred CccccCCCCCCCCceec---CCCceeehhhHHHHHHh
Q 010602 39 FYCCALTFTPFEDPVCT---ADGSVFELMSITPYIRK 72 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t---~~G~lf~k~~I~~~L~~ 72 (506)
...|+||+..+..|++. +-||.|++..|..|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 45799999999999764 68999999999999974
No 171
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.54 E-value=1.1 Score=45.99 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=45.8
Q ss_pred eecccccccccCceEEEEEecCCee--ecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V--~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..||+++..|..=.+ -..|-|+ |-.+++-+++.....|+||+|++++.-+|++.
T Consensus 250 L~CPlS~~ri~~PvR---g~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 250 LQCPISYTRMKYPSK---SINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp SBCTTTSSBCSSEEE---ETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred ecCCCccccccccCc---CCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 689999999864333 3569987 88899999998889999999999999999887
No 172
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=80.13 E-value=0.35 Score=41.84 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=0.8
Q ss_pred ceeecccccccccCce--------------EEEEEecCCeeecHHHHHHHhccccCccccCCCCCCC
Q 010602 99 GEYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 151 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t--------------~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~ 151 (506)
..-.|+||...|.+.- -.+++-+|||+|...||.+--.....| |+|..+|.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~C--P~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC--PLDNREWE 111 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcC--CCCCCeee
Confidence 4458999999986521 133345899999999999875445567 99988875
No 173
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=79.02 E-value=1.4 Score=45.16 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred ccccCCCCCCCCceec-CCCce--eehhhHHHHHHhcCCCCCCCCCCCCCCcccccccccCCceeecccccccccC
Q 010602 40 YCCALTFTPFEDPVCT-ADGSV--FELMSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTE 112 (506)
Q Consensus 40 ~~C~LSl~p~~dPV~t-~~G~l--f~k~~I~~~L~~~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPvt~k~f~~ 112 (506)
..||||+.++..|+=. ..-|+ ||+++++..... .+.|.||||.+.+.-
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~-------------------------~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK-------------------------KPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH-------------------------SCCCBCTTTCSBCCG
T ss_pred eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh-------------------------CCCeECCCCCcccCH
Confidence 3599999999999975 44565 999999997764 236999999988754
No 174
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=76.48 E-value=2.1 Score=43.84 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=45.2
Q ss_pred eecccccccccCceEEEEEecCCee--ecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V--~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..||+++..|.-=.+ -..|-|. |-.+++-+++.....|+||+|++++.-+|++.
T Consensus 216 L~CPlS~~ri~~P~R---g~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCR---AVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp SBCTTTCSBCSSEEE---ETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeCCCccceeccCCc---CCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 589999998864322 2568887 99999999998888999999999999999887
No 175
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=76.20 E-value=3.4 Score=35.33 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=62.2
Q ss_pred CccccCCCCCCC---CceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCC-ccc---ccccccCCceeeccccccccc
Q 010602 39 FYCCALTFTPFE---DPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLED-LIP---LTFHKNAEGEYHCPVLNKVFT 111 (506)
Q Consensus 39 f~~C~LSl~p~~---dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kd-Li~---l~f~kn~~~~~~CPvt~k~f~ 111 (506)
-+.|..+..||. .+....+|.+|++..-.+-....++|..-++++...+ ++. ..|+ ..=|.|-.|.+.|.
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H---~~CF~C~~C~~~L~ 105 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYH---LECFKCAACQKHFC 105 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEE---GGGCBCTTTCCBCC
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceEC---ccCcccCCCCCCCC
Confidence 466888999995 4677899999998776554332225777777776544 221 1222 22478999999997
Q ss_pred CceEEEEEecCCeeecHHHHHHH
Q 010602 112 EFTHIVAVKTTGNVFCFEAIKEL 134 (506)
Q Consensus 112 ~~t~iv~ik~~G~V~s~~~v~~l 134 (506)
....++. . .|.+|+..++.++
T Consensus 106 ~g~~f~~-~-~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 106 VGDRYLL-I-NSDIVCEQDIYEW 126 (131)
T ss_dssp TTCEEEE-E-TTEEEEGGGHHHH
T ss_pred CCCEEEE-E-CCEEEcHHHHHHH
Confidence 5555553 3 5999999998876
No 176
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.66 E-value=4.5 Score=30.96 Aligned_cols=31 Identities=6% Similarity=-0.193 Sum_probs=28.1
Q ss_pred CCCccccCCCCCCCCceecCCCce-eehhhHH
Q 010602 37 LPFYCCALTFTPFEDPVCTADGSV-FELMSIT 67 (506)
Q Consensus 37 lpf~~C~LSl~p~~dPV~t~~G~l-f~k~~I~ 67 (506)
.....|.|++....++|..+-||+ |+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 346789999999999999999999 9999987
No 177
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=74.76 E-value=0.25 Score=39.87 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCcccccccccC----------------CceeecccccccccCc
Q 010602 75 KHPVTGTPLKLEDLIPLTFHKNA----------------EGEYHCPVLNKVFTEF 113 (506)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l~f~kn~----------------~~~~~CPvt~k~f~~~ 113 (506)
+||+.|.+|...+||.--+.... .--|.||+|+.+|-+.
T Consensus 10 ~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~ 64 (95)
T 2k5c_A 10 KCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK 64 (95)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred cCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence 59999999999988876554332 1138999999999654
No 178
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.52 E-value=3.1 Score=32.89 Aligned_cols=49 Identities=6% Similarity=0.070 Sum_probs=37.7
Q ss_pred ceeecccccccccCceEEEEEecCCeeecHHHHHHHhccc--cCccccCCCCCCCC
Q 010602 99 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT--KNWKELLTDEPFTK 152 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~--k~~~d~v~~~~f~~ 152 (506)
.--.|+||+..|....... .|||.|-..||.+.-... ..| |+|..++.-
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~C--P~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRC--PHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCC--TTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCC--CCCcCcCCC
Confidence 3457999999998654332 899999999999885433 467 999988763
No 179
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=71.97 E-value=1.6 Score=34.61 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=27.3
Q ss_pred CccccCCCCCCCCceecCCCce-eehhhHHHH
Q 010602 39 FYCCALTFTPFEDPVCTADGSV-FELMSITPY 69 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~l-f~k~~I~~~ 69 (506)
...|++++..+.+||..+-||+ |+...+..|
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc
Confidence 3479999999999999999999 999988644
No 180
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.53 E-value=4.1 Score=32.44 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=40.4
Q ss_pred CceeecccccccccCceEEEEEecCC-----eeecHHHHHHHhcccc--CccccCCCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTG-----NVFCFEAIKELNIKTK--NWKELLTDEPFTKED 154 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G-----~V~s~~~v~~l~~k~k--~~~d~v~~~~f~~~D 154 (506)
..+-.|+||..+|.....+ +.+|+ |.|-.+||++-....+ .| ++|..+|.-+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~C--plCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSDTRCC--ELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHCCSBC--SSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCCCCCC--CCCCCeeecCc
Confidence 4457899999999766554 47885 9999999998854443 46 99999886543
No 181
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=68.19 E-value=11 Score=34.29 Aligned_cols=89 Identities=10% Similarity=0.220 Sum_probs=60.3
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhc-CCCCCCCCCCCCCCcc----cccccccCCceeecccccccccCc
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKY-GKHPVTGTPLKLEDLI----PLTFHKNAEGEYHCPVLNKVFTEF 113 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~-~~~Pvtg~~l~~kdLi----~l~f~kn~~~~~~CPvt~k~f~~~ 113 (506)
-+.|..+..||..-....+|.+|++..-. +.+ .+|..-++++...+++ ...|++ .=|.|-.|.+.|...
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~---~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~---~CF~C~~C~~~L~~g 160 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFF---KRFGTKCAACQLGIPPTQVVRRAQDFVYHL---HCFACVVCKRQLATG 160 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHH---HTTSCCCTTTCCCCCSSCCCCEETTEECCT---TTCCCTTTCCCCCTT
T ss_pred cCccCCCCCccCCCceeECCEeeecCccc---cccccccccCCCccCCCceEEecCCCCEEe---CCCcCCCCCCCCCCC
Confidence 35688888888765456889999976543 333 3566666666654432 122332 347899999999866
Q ss_pred eEEEEEecCCeeecHHHHHHH
Q 010602 114 THIVAVKTTGNVFCFEAIKEL 134 (506)
Q Consensus 114 t~iv~ik~~G~V~s~~~v~~l 134 (506)
..+.. ...|.+|+..++.++
T Consensus 161 ~~f~~-~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 161 DEFYL-MEDSRLVCKADYETA 180 (182)
T ss_dssp CEEEE-CTTSCEECHHHHHHH
T ss_pred CceEE-ccCCEEECHHHHHHh
Confidence 66553 446999999999887
No 182
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=68.15 E-value=15 Score=32.82 Aligned_cols=91 Identities=10% Similarity=0.171 Sum_probs=62.6
Q ss_pred CccccCCCCCCCCceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCcc-c---ccccccCCceeecccccccccCce
Q 010602 39 FYCCALTFTPFEDPVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDLI-P---LTFHKNAEGEYHCPVLNKVFTEFT 114 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdLi-~---l~f~kn~~~~~~CPvt~k~f~~~t 114 (506)
-+.|..+..+|..-....+|.+|++..-.+-. ..+|..-++++...+++ . ..|+. .=|.|-.|.+.|....
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~~v~~a~~~~~H~---~CF~C~~C~~~L~~g~ 107 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPTQVVRRAQDFVYHL---HCFACVVCKRQLATGD 107 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCCTTSEEEEETTEEEEG---GGCBCTTTCCBCCTTC
T ss_pred cCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccCCCcEEEEcCCceEee---CCCcCCCCCCCCCCCC
Confidence 45688899998765557899999987654422 23566667777655532 1 12222 2478999999998665
Q ss_pred EEEEEecCCeeecHHHHHHHh
Q 010602 115 HIVAVKTTGNVFCFEAIKELN 135 (506)
Q Consensus 115 ~iv~ik~~G~V~s~~~v~~l~ 135 (506)
.+. +...|.+|+..++.++.
T Consensus 108 ~f~-~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 108 EFY-LMEDSRLVCKADYETAK 127 (169)
T ss_dssp EEE-ECTTSCEEEHHHHHHHH
T ss_pred ceE-EccCCeEECHHHHHHHh
Confidence 654 34569999999999874
No 183
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=65.92 E-value=32 Score=30.25 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=60.1
Q ss_pred eEEEEEecCeeeEEEEcCCCChhHHHHHHHHH----hccccCCceEEEeecCceEecCCCCCCCCCCCcccCCCCccccc
Q 010602 349 GYVQLHTTHGDLNIELHCDITPRSCENFITLC----ERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN 424 (506)
Q Consensus 349 ~~v~l~T~~G~I~ieL~~d~aP~t~~NF~~L~----~~g~Y~g~~f~Rvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 424 (506)
..|.+-.....+..+|+.. |.|+..|+++. .-..|. .-++-.+|-.+ . . +| +
T Consensus 13 ~~~~~~~~~~~v~a~L~Dn--p~Ta~~~~~~LPl~~~~~~~g-~E~y~~~p~~l-~----~---------------~e-~ 68 (136)
T 1zx8_A 13 MRVELLFESGKCVIDLNEE--YEVVKLLKEKIPFESVVNTWG-EEIYFSTPVNV-Q----K---------------ME-N 68 (136)
T ss_dssp EEEEEECSSCEEEEEEETT--SHHHHHHHHHCSEEEECEESS-SEEEEECSCCC-C----C---------------CS-S
T ss_pred eEEEEeeCCcEEEEEEcCC--HHHHHHHHHHCCcEEEHHHhC-CcEEEECCccC-C----C---------------CC-C
Confidence 4456666777899999744 88999999886 122242 22322222211 0 0 01 1
Q ss_pred ccCCCCCccEEEEecCCCCCCCceEEEEeCCCCCCCC------CCcEEEEEEcCHHHHHHh
Q 010602 425 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY------KHTVFGGVVGGLTTLAAM 479 (506)
Q Consensus 425 ~~l~h~~~G~lsman~g~~t~~SqFfItl~~~~~LDg------k~tVFGrVv~G~dvL~~I 479 (506)
.. .-...|-|+.-..+. -|-|-|++.|...+ .-.+||||.+|++.|..+
T Consensus 69 ~~-~~~~~GDIaYw~pgg-----~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 69 PR-EVVEIGDVGYWPPGK-----ALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp EE-SSBCTTEEEEEGGGT-----EEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred CC-ccCCCCcEEEeCCCC-----EEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 11 113567777655433 57777888765543 367999999997776554
No 184
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=59.41 E-value=7.3 Score=44.77 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=42.7
Q ss_pred CceeecccccccccCceEEEEEecCC-eeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTG-NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G-~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
..+|+|||+...|.+= | +-++| ..|-..+|++--.. ...||+|..|++..|+|+
T Consensus 889 P~~F~cPIs~~lM~DP---V-ilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---V-ILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CGGGBCTTTCSBCSSE---E-ECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCEE
T ss_pred cHHhCCcchhhHHhCC---e-EcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcccccc
Confidence 4579999999999763 3 45777 68999999997544 335699999999888876
No 185
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=58.05 E-value=3.2 Score=27.97 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.9
Q ss_pred eeecccccccccCc
Q 010602 100 EYHCPVLNKVFTEF 113 (506)
Q Consensus 100 ~~~CPvt~k~f~~~ 113 (506)
.|+||+|.+.|++.
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 49999999998763
No 186
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=56.74 E-value=3.3 Score=38.01 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=62.2
Q ss_pred CccccCCCCCCCC---ceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCC-ccc---ccccccCCceeeccccccccc
Q 010602 39 FYCCALTFTPFED---PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLED-LIP---LTFHKNAEGEYHCPVLNKVFT 111 (506)
Q Consensus 39 f~~C~LSl~p~~d---PV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kd-Li~---l~f~kn~~~~~~CPvt~k~f~ 111 (506)
-+.|..|..+|.+ +....+|.+|++..-.+-....++|+.-++++...+ ++. ..|+. .-|.|-.|.+.|.
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~---~CF~C~~C~~~L~ 108 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHL---KCFTCSTCRNRLV 108 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECG---GGCBCTTTCCBCC
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeC---CCCeECCCCCCCC
Confidence 3568899999874 777899999998765543321114888788776544 222 22332 3478999999997
Q ss_pred CceEEEEEecCCeeecHHHHHHH
Q 010602 112 EFTHIVAVKTTGNVFCFEAIKEL 134 (506)
Q Consensus 112 ~~t~iv~ik~~G~V~s~~~v~~l 134 (506)
....++. ..|.+|+..++.++
T Consensus 109 ~g~~f~~--~~g~~yC~~c~~~~ 129 (188)
T 1rut_X 109 PGDRFHY--INGSLFCEHDRPTA 129 (188)
T ss_dssp TTCEEEE--ETTEEEEGGGCCTT
T ss_pred CCCeEEE--ECCeEECHHHHHHH
Confidence 5555542 35999999988776
No 187
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=55.33 E-value=13 Score=31.12 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=47.6
Q ss_pred ccccCCCCCCCCce-ecCCCceeehhhHHHHHHh-cCCCCCCCCCCCCCCcccccccccCCceeeccc---ccccc
Q 010602 40 YCCALTFTPFEDPV-CTADGSVFELMSITPYIRK-YGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPV---LNKVF 110 (506)
Q Consensus 40 ~~C~LSl~p~~dPV-~t~~G~lf~k~~I~~~L~~-~~~~Pvtg~~l~~kdLi~l~f~kn~~~~~~CPv---t~k~f 110 (506)
.+|+.+.-|+..=. +.|-+|+|+...+..|.++ .+.||.-..++ ..+....+ ++-|+|++ |+++|
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V-----~rVe~~~~-~~if~C~~~~~Ckrty 71 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV-----QRIEQCTR-GSLFMCSIVQGCKRTY 71 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC-----SEEEEEEG-GGCCCCCCCCCCCCCC
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCee-----eeeEEecc-CCEEECCCCCCHHHHh
Confidence 47899999987654 4599999999999999864 57899876553 34444444 67799993 44444
No 188
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.01 E-value=19 Score=28.28 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=37.3
Q ss_pred CCccccCCCCCCCCceec-CCCceeehhhHHHHHHhc--CCCCCCCCCCC
Q 010602 38 PFYCCALTFTPFEDPVCT-ADGSVFELMSITPYIRKY--GKHPVTGTPLK 84 (506)
Q Consensus 38 pf~~C~LSl~p~~dPV~t-~~G~lf~k~~I~~~L~~~--~~~Pvtg~~l~ 84 (506)
.-..|+|+...+..=+.+ .-|+.|-...|..||+.. .+||+-+.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 356799999999754434 669999999999999877 67888776554
No 189
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=50.10 E-value=54 Score=29.70 Aligned_cols=102 Identities=11% Similarity=0.215 Sum_probs=60.1
Q ss_pred CCccccCCCCCCCCc-eecCCCceeehhhHHHHHHhcC------------------------------------------
Q 010602 38 PFYCCALTFTPFEDP-VCTADGSVFELMSITPYIRKYG------------------------------------------ 74 (506)
Q Consensus 38 pf~~C~LSl~p~~dP-V~t~~G~lf~k~~I~~~L~~~~------------------------------------------ 74 (506)
.=+.|..+..+|.+- +...+|.+|++..-.+-.....
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 112 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKV 112 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCcccccccc
Confidence 345688999998764 5668999999877665443210
Q ss_pred ----CCCCCCCCCCCCCcccc---cccccCCceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCC
Q 010602 75 ----KHPVTGTPLKLEDLIPL---TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 147 (506)
Q Consensus 75 ----~~Pvtg~~l~~kdLi~l---~f~kn~~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~ 147 (506)
.|+.-++++...++|.. .|+ ..=|.|-.|.+.|.+.. ++ ...|.+|+..++.++- ...| ..|+
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H---~~CF~C~~C~~~L~~~~-~~--~~~g~~yC~~cy~~~f--~~kc--~~C~ 182 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWH---KSCFRCAKCGKSLESTT-LA--DKDGEIYCKGCYAKNF--GPKG--FGFG 182 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEEC---TTTCBCTTTCCBCCSSS-EE--EETTEEEEHHHHHHHT--CCCC--CCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccc---hhcCCccccCCCCCCCc-cc--ccCCEEeCHHHHHHhc--CCcC--CCCC
Confidence 01222223322222210 011 12367999999997653 32 4469999999998873 2335 5566
Q ss_pred CC
Q 010602 148 EP 149 (506)
Q Consensus 148 ~~ 149 (506)
++
T Consensus 183 ~~ 184 (192)
T 1b8t_A 183 QG 184 (192)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 190
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.47 E-value=16 Score=30.82 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=41.6
Q ss_pred eeecccccccccCc-eEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEEecC
Q 010602 100 EYHCPVLNKVFTEF-THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 160 (506)
Q Consensus 100 ~~~CPvt~k~f~~~-t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~Lqd 160 (506)
-|.|..|.+.|.+. ..++ ...|.+|+..++.++--+...| -.|+++++..+|+.+-.
T Consensus 32 CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~cy~~~f~~~~~C--~~C~~~I~~~~~~~~g~ 89 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY--TKSGMILCRNDYIRLFGNSGAG--GSGGHMGSGGDVMVVGE 89 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE--EETTEEECHHHHHHHHCCCCSS--SCSSCCSCCEESSSSSS
T ss_pred CCCcCCCCCcccccCCeEE--EECCeeecHHHHHHHcCCCCcc--ccCCCCcCchheEEcCC
Confidence 36899999999743 3333 4569999999999874322267 88999999877765543
No 191
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=41.94 E-value=9.9 Score=27.30 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.1
Q ss_pred Cceeeccccccc
Q 010602 98 EGEYHCPVLNKV 109 (506)
Q Consensus 98 ~~~~~CPvt~k~ 109 (506)
..+|.||+|+-.
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 456999999843
No 192
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=40.90 E-value=12 Score=24.53 Aligned_cols=16 Identities=38% Similarity=0.800 Sum_probs=12.5
Q ss_pred CCCCCCCCccccCCCCC
Q 010602 32 TPFKRLPFYCCALTFTP 48 (506)
Q Consensus 32 ~~~~~lpf~~C~LSl~p 48 (506)
.+|+ .||.-|+||...
T Consensus 3 hsfr-rpfhecalcysi 18 (36)
T 2jyp_A 3 HSFR-RPFHECALCYSI 18 (36)
T ss_dssp SSST-TTTTCCSSSTTT
T ss_pred cccc-CccchheeEEee
Confidence 4676 499999999764
No 193
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=40.12 E-value=10 Score=38.85 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=27.0
Q ss_pred cccCCCCCCCC----c--eec--CCCceeehhhHHHHHHhc
Q 010602 41 CCALTFTPFED----P--VCT--ADGSVFELMSITPYIRKY 73 (506)
Q Consensus 41 ~C~LSl~p~~d----P--V~t--~~G~lf~k~~I~~~L~~~ 73 (506)
-|+||+.-+.+ | +|. ..||.|-..+|.+||...
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~ 350 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTL 350 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHH
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhC
Confidence 59999988775 5 453 569999999999999863
No 194
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.04 E-value=9.2 Score=21.84 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=13.2
Q ss_pred eeecccccccccCceEE
Q 010602 100 EYHCPVLNKVFTEFTHI 116 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~i 116 (506)
.|.|++|++.|.....+
T Consensus 2 p~~C~~C~k~f~~~~~l 18 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQL 18 (26)
Confidence 47899999999876544
No 195
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.43 E-value=31 Score=33.00 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=40.4
Q ss_pred eecccccccccCceEEEEEecCCeeecHHHHHHHhcccc--CccccCCCCCCCCCCeEEecCC
Q 010602 101 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK--NWKELLTDEPFTKEDLITIQNP 161 (506)
Q Consensus 101 ~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k--~~~d~v~~~~f~~~DiI~Lqdp 161 (506)
..|.+|+...+....+ .+|++.|-..|+.+.-.... .| |.|+.++... +..+.+|
T Consensus 181 ~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~C--P~C~~~W~~~-~~~~~~~ 237 (238)
T 3nw0_A 181 KICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRC--PHCNDYWPHE-IPKVFDP 237 (238)
T ss_dssp CBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBC--TTTCCBCCSC-CCCCCCC
T ss_pred CcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCC--CCCCCCCCCC-CCCCCCC
Confidence 5799999998865333 24999999999999843333 56 9999998765 4455444
No 196
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.43 E-value=17 Score=26.29 Aligned_cols=42 Identities=14% Similarity=0.398 Sum_probs=26.2
Q ss_pred CceeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCC
Q 010602 98 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~D 154 (506)
...|.||+|.+.|+.... +..+-...+.+.+.+|+..|...+
T Consensus 12 ~k~~~C~~C~k~F~~~~~---------------l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEA---------------NQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SSEEECSSSCCEEEHHHH---------------HHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCCccCCCCCchhccHHH---------------hHhhcCCCCCEECCCCCCccccCc
Confidence 456999999999975332 222222223344589999987654
No 197
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.42 E-value=12 Score=21.79 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.3
Q ss_pred eeecccccccccCceEE
Q 010602 100 EYHCPVLNKVFTEFTHI 116 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~i 116 (506)
.|.|++|.+.|.....+
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSL 18 (29)
Confidence 37899999999876554
No 198
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.28 E-value=20 Score=20.47 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.1
Q ss_pred eeecccccccccCc
Q 010602 100 EYHCPVLNKVFTEF 113 (506)
Q Consensus 100 ~~~CPvt~k~f~~~ 113 (506)
.|.|++|.+.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 2m0f_A 2 PLKCRECGKQFTTS 15 (29)
T ss_dssp CEECTTTSCEESCH
T ss_pred CccCCCCCCccCCh
Confidence 58899999888754
No 199
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=26.87 E-value=68 Score=23.70 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=23.8
Q ss_pred CccccCCCCCCCCceecC---CC--ceeehhhHHHHHHhc
Q 010602 39 FYCCALTFTPFEDPVCTA---DG--SVFELMSITPYIRKY 73 (506)
Q Consensus 39 f~~C~LSl~p~~dPV~t~---~G--~lf~k~~I~~~L~~~ 73 (506)
-..|.|++....+|++.| .| ..|=...|..||...
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~ 45 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS 45 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhC
Confidence 456888876555554443 23 478899999999853
No 200
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.51 E-value=17 Score=29.64 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=13.2
Q ss_pred ccCccccCCCCCCCCCCeEEe
Q 010602 138 TKNWKELLTDEPFTKEDLITI 158 (506)
Q Consensus 138 ~k~~~d~v~~~~f~~~DiI~L 158 (506)
+..|.+|+|+.+ +++++.+
T Consensus 66 PddW~CPvCga~--K~~F~~i 84 (87)
T 1s24_A 66 PDDWCCPDCGAT--KEDYVLY 84 (87)
T ss_dssp CTTCCCSSSCCC--GGGEEEC
T ss_pred CCCCCCCCCCCC--HHHhhhc
Confidence 567888999963 4555554
No 201
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.85 E-value=14 Score=21.45 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.4
Q ss_pred eeecccccccccCceEE
Q 010602 100 EYHCPVLNKVFTEFTHI 116 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~i 116 (506)
.|.|+.|.+.|.....+
T Consensus 3 ~~~C~~C~k~f~~~~~l 19 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGAL 19 (30)
Confidence 48899999999876554
No 202
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.19 E-value=1.3e+02 Score=24.96 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=55.0
Q ss_pred CccccCCCCCCCC-ceecCCCceeehhhHHHHHHhcCCCCCCCCCCCCCCc-ccc---cccccCCceeecccccccccCc
Q 010602 39 FYCCALTFTPFED-PVCTADGSVFELMSITPYIRKYGKHPVTGTPLKLEDL-IPL---TFHKNAEGEYHCPVLNKVFTEF 113 (506)
Q Consensus 39 f~~C~LSl~p~~d-PV~t~~G~lf~k~~I~~~L~~~~~~Pvtg~~l~~kdL-i~l---~f~kn~~~~~~CPvt~k~f~~~ 113 (506)
-+.|..+..+|.. +....+|.+|++..-.+- -..+|+.-++++...+. +.. .|+ ....=|.|-.|.+.|.+.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~~~~~~a~~~~~H-~~~~CF~C~~C~~~l~~~ 106 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPEVQRVTYNNFSWH-ASTECFLCSCCSKCLIGQ 106 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTTSCEEEETTEEEE-SSTTTSBCTTTCCBCTTS
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcCceEEECCCCEee-CCCCCcCcCCCCCccCCC
Confidence 3568889999876 566799999997765432 12457777777775432 211 222 002336699999999854
Q ss_pred eEEEEEecCCeeecHHHH
Q 010602 114 THIVAVKTTGNVFCFEAI 131 (506)
Q Consensus 114 t~iv~ik~~G~V~s~~~v 131 (506)
.++ ++ .|.+|+....
T Consensus 107 -~f~-~~-~~~~yC~~~~ 121 (126)
T 2xqn_T 107 -KFM-PV-EGMVFCSVEC 121 (126)
T ss_dssp -EEE-EE-TTEEESSHHH
T ss_pred -eeE-eE-CCEEcchHHh
Confidence 343 23 5999997433
No 203
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.14 E-value=21 Score=20.34 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=11.4
Q ss_pred eeecccccccccCce
Q 010602 100 EYHCPVLNKVFTEFT 114 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t 114 (506)
.|.|++|.+.|...+
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCCSSCCCCCCTTT
T ss_pred CCcCCCCCcccCCHH
Confidence 378999999887643
No 204
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.22 E-value=22 Score=20.39 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=11.5
Q ss_pred eeecccccccccCce
Q 010602 100 EYHCPVLNKVFTEFT 114 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t 114 (506)
.|.|++|.+.|....
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (29)
T 1rik_A 2 KFACPECPKRFMRSD 16 (29)
T ss_dssp CEECSSSSCEESCSH
T ss_pred CccCCCCCchhCCHH
Confidence 378999999887643
No 205
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.21 E-value=25 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=11.1
Q ss_pred eeecccccccccCc
Q 010602 100 EYHCPVLNKVFTEF 113 (506)
Q Consensus 100 ~~~CPvt~k~f~~~ 113 (506)
.|.|++|.+.|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 1ard_A 2 SFVCEVCTRAFARQ 15 (29)
T ss_dssp CCBCTTTCCBCSSH
T ss_pred CeECCCCCcccCCH
Confidence 37899999988754
No 206
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=23.84 E-value=27 Score=21.32 Aligned_cols=15 Identities=33% Similarity=0.835 Sum_probs=13.2
Q ss_pred HHHHHHHhccccCCc
Q 010602 374 ENFITLCERGYYNGV 388 (506)
Q Consensus 374 ~NF~~L~~~g~Y~g~ 388 (506)
.||..-.+.|||||.
T Consensus 4 knfwsslrkgfydge 18 (26)
T 2khf_A 4 KNFWSSLRKGFYDGE 18 (26)
T ss_dssp HHHHHHHHHHHTTTH
T ss_pred HHHHHHHHhhcccch
Confidence 589998999999985
No 207
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.46 E-value=27 Score=19.64 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.2
Q ss_pred eecccccccccCc
Q 010602 101 YHCPVLNKVFTEF 113 (506)
Q Consensus 101 ~~CPvt~k~f~~~ 113 (506)
|.|++|.+.|...
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T 1znf_A 2 YKCGLCERSFVEK 14 (27)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCCCCCcCCCH
Confidence 6788888888753
No 208
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.22 E-value=28 Score=19.81 Aligned_cols=14 Identities=14% Similarity=0.522 Sum_probs=11.6
Q ss_pred eeecccccccccCc
Q 010602 100 EYHCPVLNKVFTEF 113 (506)
Q Consensus 100 ~~~CPvt~k~f~~~ 113 (506)
.|.|++|.+.|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvh_A 3 PFSCSLCPQRSRDF 16 (27)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCcChhhCCH
Confidence 48899999998764
No 209
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.08 E-value=27 Score=19.90 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.4
Q ss_pred eeecccccccccCc
Q 010602 100 EYHCPVLNKVFTEF 113 (506)
Q Consensus 100 ~~~CPvt~k~f~~~ 113 (506)
.|.|++|.+.|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 3 PYSCSVCGKRFSLK 16 (28)
T ss_dssp SEECSSSCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 48899999998754
No 210
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.07 E-value=25 Score=20.22 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=11.5
Q ss_pred eeecccccccccCc
Q 010602 100 EYHCPVLNKVFTEF 113 (506)
Q Consensus 100 ~~~CPvt~k~f~~~ 113 (506)
.|.|++|.+.|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvg_A 3 PYRCPLCRAGCPSL 16 (27)
T ss_dssp TEEETTTTEEESCH
T ss_pred CcCCCCCCcccCCH
Confidence 48899999998754
No 211
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=21.92 E-value=57 Score=31.43 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCCCC-CCCCCCccccccccc-CCceeecccccccccCc
Q 010602 67 TPYIRKYGKHPVTGT-PLKLEDLIPLTFHKN-AEGEYHCPVLNKVFTEF 113 (506)
Q Consensus 67 ~~~L~~~~~~Pvtg~-~l~~kdLi~l~f~kn-~~~~~~CPvt~k~f~~~ 113 (506)
..|+.++.-||-.|. +| .+|.-| +..+|.||.|..+|-=.
T Consensus 28 E~Wv~~n~yCPnCG~~~l-------~~f~nN~PVaDF~C~~C~EeyELK 69 (257)
T 4esj_A 28 EDWVYRQSYCPNCGNNPL-------NHFENNRPVADFYCNHCSEEFELK 69 (257)
T ss_dssp HHHHHHHCCCTTTCCSSC-------EEC----CCCEEECTTTCCEEEEE
T ss_pred HHHHHHCCcCCCCCChhh-------hhccCCCcccccccCCcchhheec
Confidence 459999999999987 33 144445 57889999999887533
No 212
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.89 E-value=25 Score=20.14 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=11.5
Q ss_pred eeecccccccccCce
Q 010602 100 EYHCPVLNKVFTEFT 114 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t 114 (506)
.|.|++|.+.|....
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (30)
T 1klr_A 2 TYQCQYCEFRSADSS 16 (30)
T ss_dssp CCCCSSSSCCCSCSH
T ss_pred CccCCCCCCccCCHH
Confidence 378999999887643
No 213
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.84 E-value=2.2e+02 Score=23.44 Aligned_cols=48 Identities=8% Similarity=0.060 Sum_probs=37.1
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCC
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 154 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~D 154 (506)
=|.|-.|.+.|.+.. ++ ...|.+|+..++.++. ...| ..|++++...+
T Consensus 30 CF~C~~C~~~L~~~~-f~--~~~g~~yC~~cy~~~~--~~~C--~~C~~~I~~~~ 77 (126)
T 2xqn_T 30 HFCCFDCDSILAGEI-YV--MVNDKPVCKPCYVKNH--AVVC--QGCHNAIDPEV 77 (126)
T ss_dssp GSBCTTTCCBCTTSE-EE--EETTEEEEHHHHHHHS--CCBC--TTTCSBCCTTS
T ss_pred CCCcCCCCCCCCcCE-EE--eECCEEechHHhCcCc--CccC--cccCCcCCcCc
Confidence 478999999998653 32 3569999999999873 3456 88999998644
No 214
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.92 E-value=31 Score=21.18 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.5
Q ss_pred ceeecccccccccCc
Q 010602 99 GEYHCPVLNKVFTEF 113 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~ 113 (506)
..|.|++|.+.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2els_A 8 KIFTCEYCNKVFKFK 22 (36)
T ss_dssp CCEECTTTCCEESSH
T ss_pred CCEECCCCCceeCCH
Confidence 459999999999764
No 215
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.83 E-value=32 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.3
Q ss_pred ceeecccccccccCc
Q 010602 99 GEYHCPVLNKVFTEF 113 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~ 113 (506)
..|.|++|.+.|...
T Consensus 6 k~~~C~~C~k~f~~~ 20 (35)
T 2elx_A 6 SGYVCALCLKKFVSS 20 (35)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCCCcchhCCH
Confidence 359999999999764
No 216
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.34 E-value=1.4e+02 Score=26.23 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=38.7
Q ss_pred eeecccccccccCceEEEEEecCCeeecHHHHHHHhccccCccccCCCCCCCCCCeEE
Q 010602 100 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 157 (506)
Q Consensus 100 ~~~CPvt~k~f~~~t~iv~ik~~G~V~s~~~v~~l~~k~k~~~d~v~~~~f~~~DiI~ 157 (506)
-|.|-.|.+.|.+.. + . ..|.+|+..++.++. ...| ..|++++...+++.
T Consensus 33 CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~~f--~~~C--~~C~~~I~~~~~v~ 82 (169)
T 2rgt_A 33 CLKCSDCHVPLAERC-F--S-RGESVYCKDDFFKRF--GTKC--AACQLGIPPTQVVR 82 (169)
T ss_dssp TSBCTTTCCBCCSCC-E--E-SSSCEECHHHHHHHH--SCBC--TTTCCBCCTTSEEE
T ss_pred cCccCCCCCcCCCCC-c--c-cCCeeeecccccccc--cccc--cccccccCCCcEEE
Confidence 478999999998865 3 3 479999999998874 3446 88999998777553
No 217
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.22 E-value=33 Score=21.15 Aligned_cols=15 Identities=20% Similarity=0.653 Sum_probs=12.4
Q ss_pred ceeecccccccccCc
Q 010602 99 GEYHCPVLNKVFTEF 113 (506)
Q Consensus 99 ~~~~CPvt~k~f~~~ 113 (506)
..|.|++|.+.|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSBCCTTTCCCBSSH
T ss_pred CCccCCCCCcccCcH
Confidence 459999999999764
No 218
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.17 E-value=33 Score=20.91 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=12.9
Q ss_pred CceeecccccccccCc
Q 010602 98 EGEYHCPVLNKVFTEF 113 (506)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (506)
...|.|++|.+.|...
T Consensus 7 ~~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 7 GKTHLCDMCGKKFKSK 22 (36)
T ss_dssp CSSCBCTTTCCBCSSH
T ss_pred CCCeecCcCCCCcCch
Confidence 3459999999999764
Done!