Query 010604
Match_columns 506
No_of_seqs 259 out of 1293
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 10:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 3E-49 1E-53 408.1 17.6 315 154-481 16-342 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 2.1E-46 7.1E-51 374.3 13.8 257 230-492 6-269 (270)
3 4fp9_B Mterf domain-containing 100.0 2.3E-37 8E-42 317.6 14.4 226 264-501 45-281 (335)
4 3mva_O Transcription terminati 100.0 4.1E-34 1.4E-38 295.0 13.8 254 192-456 17-286 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 3.3E-33 1.1E-37 278.8 11.7 218 195-421 6-225 (270)
6 4fp9_B Mterf domain-containing 99.9 1.5E-24 5.2E-29 222.5 13.3 181 194-424 46-227 (335)
7 4fzv_B Mterf domain-containing 99.5 3.6E-13 1.2E-17 120.6 16.1 183 311-500 42-235 (239)
8 4fzv_B Mterf domain-containing 98.2 3.1E-06 1.1E-10 75.9 8.2 139 272-420 40-179 (239)
9 2ca6_A RAN GTPase-activating p 91.7 0.041 1.4E-06 55.8 0.8 9 32-40 305-313 (386)
10 4ae4_A Ubiquitin-associated pr 83.1 6 0.0002 34.0 8.9 102 303-423 10-116 (118)
11 1oqy_A HHR23A, UV excision rep 80.7 1.2 4.1E-05 45.8 4.3 46 225-279 164-209 (368)
12 3hou_D DNA-directed RNA polyme 80.3 1.2 4.2E-05 42.1 3.8 51 194-251 160-212 (221)
13 3ff5_A PEX14P, peroxisomal bio 74.5 3.6 0.00012 30.5 4.1 34 362-399 21-54 (54)
14 4aco_A Centromere DNA-binding 72.1 0.78 2.7E-05 51.2 0.0 16 411-426 896-911 (956)
15 4ae4_A Ubiquitin-associated pr 71.1 22 0.00074 30.4 9.0 99 196-311 10-114 (118)
16 3ff5_A PEX14P, peroxisomal bio 66.3 6.1 0.00021 29.3 3.8 25 228-252 29-53 (54)
17 1ify_A HHR23A, UV excision rep 65.2 9.9 0.00034 27.2 4.7 39 374-420 7-45 (49)
18 1veg_A NEDD8 ultimate buster-1 65.2 12 0.0004 30.2 5.6 41 375-423 29-69 (83)
19 1y14_A B32, RPB4, DNA-directed 65.0 4 0.00014 37.9 3.2 52 193-251 125-178 (187)
20 1wgn_A UBAP1, ubiquitin associ 64.1 12 0.0004 28.5 5.0 41 375-423 19-59 (63)
21 2w84_A Peroxisomal membrane pr 63.9 7.7 0.00026 30.2 4.1 35 361-399 25-59 (70)
22 1nh2_C Transcription initiatio 62.8 1.4 4.6E-05 35.3 -0.3 9 97-105 41-49 (79)
23 2knz_A Ubiquilin-4; cytoplasm, 62.1 10 0.00034 27.7 4.3 41 372-420 8-49 (53)
24 2dak_A Ubiquitin carboxyl-term 61.1 13 0.00044 28.0 5.0 41 375-423 9-49 (63)
25 1wji_A Tudor domain containing 59.3 15 0.00052 27.8 5.0 38 376-421 10-47 (63)
26 2g3q_A Protein YBL047C; endocy 59.3 14 0.00048 25.4 4.6 35 377-419 6-40 (43)
27 2jy5_A Ubiquilin-1; UBA, alter 58.1 16 0.00055 26.5 4.8 40 372-419 9-49 (52)
28 1vg5_A RSGI RUH-014, rhomboid 58.1 11 0.00038 29.6 4.2 41 373-421 27-67 (73)
29 1wiv_A UBP14, ubiquitin-specif 56.3 18 0.00062 28.2 5.2 39 376-422 30-68 (73)
30 3tj1_A RNA polymerase I-specif 55.3 2.5 8.5E-05 46.5 0.0 9 136-144 348-356 (649)
31 2w84_A Peroxisomal membrane pr 54.6 11 0.00039 29.3 3.6 26 228-253 34-59 (70)
32 2dai_A Ubadc1, ubiquitin assoc 51.6 24 0.00082 28.2 5.3 41 376-424 30-70 (83)
33 2dag_A Ubiquitin carboxyl-term 50.8 27 0.00091 27.3 5.4 41 376-424 10-51 (74)
34 2dah_A Ubiquilin-3; UBA domain 50.6 29 0.00098 25.4 5.2 42 372-421 6-48 (54)
35 1z96_A DNA-damage, UBA-domain 49.7 30 0.001 23.0 4.9 25 375-399 4-28 (40)
36 4aco_A Centromere DNA-binding 48.9 3.6 0.00012 46.0 0.0 8 46-53 664-671 (956)
37 2ekk_A UBA domain from E3 ubiq 48.5 20 0.0007 25.1 4.0 36 376-420 10-45 (47)
38 3ugm_A TAL effector avrbs3/PTH 46.3 42 0.0014 37.3 7.6 49 203-253 286-335 (1047)
39 1oqy_A HHR23A, UV excision rep 46.0 6.3 0.00022 40.4 1.3 40 192-238 166-205 (368)
40 2cpw_A CBL-interacting protein 45.2 24 0.00082 26.7 4.1 40 377-423 21-60 (64)
41 1wr1_B Ubiquitin-like protein 45.0 30 0.001 25.8 4.6 41 372-420 14-55 (58)
42 3ugm_A TAL effector avrbs3/PTH 44.5 21 0.00071 39.6 5.0 82 239-326 253-335 (1047)
43 2crn_A Ubash3A protein; compac 44.5 35 0.0012 25.8 5.0 41 377-424 11-51 (64)
44 1nvp_C Transcription initiatio 42.8 4 0.00014 32.3 -0.6 8 98-105 40-47 (76)
45 1oy3_D Transcription factor in 40.7 7 0.00024 36.3 0.6 15 45-59 250-264 (282)
46 2dna_A Unnamed protein product 40.1 36 0.0012 26.2 4.4 42 372-421 16-58 (67)
47 2xzm_O RPS13E; ribosome, trans 39.9 20 0.00069 32.0 3.4 37 217-253 23-59 (153)
48 2ooa_A E3 ubiquitin-protein li 39.4 25 0.00084 25.8 3.2 38 374-419 10-47 (52)
49 1rm1_C Transcription initiatio 38.9 7.1 0.00024 38.3 0.3 9 97-105 248-256 (286)
50 1whc_A RSGI RUH-027, UBA/UBX 3 38.6 44 0.0015 25.2 4.7 40 377-423 11-50 (64)
51 2dkl_A Trinucleotide repeat co 38.5 37 0.0013 27.3 4.5 39 376-422 22-60 (85)
52 1vej_A Riken cDNA 4931431F19; 38.3 50 0.0017 25.9 5.1 41 372-420 26-67 (74)
53 2bwb_A Ubiquitin-like protein 37.3 47 0.0016 23.3 4.4 40 372-419 4-44 (46)
54 2cos_A Serine/threonine protei 37.1 65 0.0022 23.7 5.1 40 378-425 12-51 (54)
55 2oo9_A E3 ubiquitin-protein li 36.8 29 0.001 24.7 3.1 24 374-397 3-26 (46)
56 1vek_A UBP14, ubiquitin-specif 36.5 62 0.0021 25.8 5.5 41 376-423 30-70 (84)
57 2d9s_A CBL E3 ubiquitin protei 35.7 32 0.0011 25.3 3.3 39 374-420 8-46 (53)
58 3u5c_N S27A, YS15, 40S ribosom 35.6 19 0.00067 32.0 2.6 37 217-253 21-57 (151)
59 4hpz_A Dtale2; DNA binding pro 34.8 60 0.0021 33.3 6.3 22 200-222 35-56 (463)
60 2knz_A Ubiquilin-4; cytoplasm, 32.8 86 0.0029 22.6 5.3 40 195-241 12-52 (53)
61 3oq9_A Tumor necrosis factor r 29.8 98 0.0034 24.8 5.7 45 193-240 11-56 (86)
62 2ooa_A E3 ubiquitin-protein li 29.6 1E+02 0.0035 22.5 5.1 42 228-277 10-51 (52)
63 2juj_A E3 ubiquitin-protein li 28.9 45 0.0015 24.6 3.1 39 374-420 6-44 (56)
64 3us3_A Calsequestrin-1; calciu 28.7 12 0.00041 37.7 0.0 10 31-40 311-320 (367)
65 3v6t_A DHAX3; tandem repeats, 27.9 2.1E+02 0.0073 29.6 8.9 114 204-325 99-214 (499)
66 3us3_A Calsequestrin-1; calciu 27.9 15 0.00052 36.9 0.6 13 30-42 282-294 (367)
67 3ay5_A Cyclin-D1-binding prote 25.6 17 0.00059 37.0 0.5 10 231-240 276-285 (360)
68 1y14_A B32, RPB4, DNA-directed 24.7 16 0.00053 33.9 0.0 30 226-255 123-152 (187)
69 2cp8_A NEXT to BRCA1 gene 1 pr 23.9 1.5E+02 0.0051 21.8 5.2 41 372-420 6-47 (54)
70 3ezq_A Tumor necrosis factor r 23.8 1.3E+02 0.0044 25.5 5.6 56 193-251 19-74 (115)
71 2lbc_A Ubiquitin carboxyl-term 23.8 75 0.0026 26.9 4.2 40 376-423 79-118 (126)
72 1sig_A Sigma70, RNA polymerase 22.7 26 0.0009 34.8 1.3 22 196-217 142-163 (339)
73 4hpz_A Dtale2; DNA binding pro 22.1 89 0.003 32.1 4.9 76 201-289 8-85 (463)
74 3j20_Q 30S ribosomal protein S 21.9 58 0.002 29.3 3.1 37 217-253 21-57 (158)
75 1dv0_A DNA repair protein HHR2 21.8 26 0.00089 24.8 0.7 35 377-419 6-40 (47)
76 3v6t_A DHAX3; tandem repeats, 21.4 1.4E+02 0.0049 30.8 6.3 114 204-325 65-180 (499)
77 3e3v_A Regulatory protein RECX 20.6 2.1E+02 0.0073 25.5 6.9 110 193-325 51-162 (177)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3e-49 Score=408.13 Aligned_cols=315 Identities=17% Similarity=0.235 Sum_probs=275.7
Q ss_pred cCCCccceeeeecCcCccchhhhhHhhhhhhhhccCcCCChHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHH
Q 010604 154 SFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERL 233 (506)
Q Consensus 154 ~~~~~f~vsyl~~~~g~~~~~~~~~s~~pkl~~~~~~~~~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL 233 (506)
+.....||+|| ++||+. .+.+.+.+|++. .....+|++|++||+++|+++++|++|+.++|.+|.++++++.|++
T Consensus 16 ~~~~~~~v~~L-~s~Gl~--~~~~~~~~p~l~--~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l 90 (343)
T 3mva_O 16 PLKNEDLLKNL-LTMGVD--IDMARKRQPGVF--HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRW 90 (343)
T ss_dssp ----CCHHHHH-HHHTCC--HHHHHHHCGGGG--GCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHH
T ss_pred ccccHHHHHHH-HHcCCC--HHHHHHhCchhh--ccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHH
Confidence 34567999999 999995 666788899997 4456799999999999999999999999999999999988999999
Q ss_pred HHHHHCCCChHhHHHHHhhCCcccccCcc-cchHHHHHHHHHcCCCCccccccccccccccccccccchhhhHHHHHHhh
Q 010604 234 EYLLSVGVKQRDVRRILLRQPQILEYTVE-NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEV 312 (506)
Q Consensus 234 ~fL~slGvs~~~l~~iv~~~P~IL~~s~e-~~L~p~v~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~l 312 (506)
+||+++|++.+++.+++.++|++|..+.+ +++.|+++||+++|++.++|++++.++|++|++++++ +++++.+|. ++
T Consensus 91 ~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~-~l 168 (343)
T 3mva_O 91 DLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQ-AA 168 (343)
T ss_dssp HHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHH-HH
T ss_pred HHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHH-Hh
Confidence 99999999999999999999995545544 4899999999999999999999999999999999987 599999996 77
Q ss_pred CCC------hhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhhhcc-ccceecccccchHHHHHHHH--
Q 010604 313 GIN------EKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-PQLLHYSIDDGLLPRINFLR-- 383 (506)
Q Consensus 313 Gv~------~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k~-P~lL~~sie~~L~~kvefL~-- 383 (506)
|++ ...|.++++++|.+|+.+ +.+++++++||++.+|++++++..++.+. |.++..+ .+.|++++.++.
T Consensus 169 gv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~ 246 (343)
T 3mva_O 169 GLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEK 246 (343)
T ss_dssp HHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHH
T ss_pred CCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHH
Confidence 774 678999999999999999 56799999999657999999999998875 5788888 468999887765
Q ss_pred --HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHHHHHHHhhcCCCCC
Q 010604 384 --SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP 461 (506)
Q Consensus 384 --~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~~l~k~~ 461 (506)
++||+++|+..||.++|+||++| +++|++|++||++ ||+++++|+++|++|+||+| ||+|||++|+..+.... .
T Consensus 247 ~~~lG~s~~ev~~~v~~~P~il~~s-~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~-~ 322 (343)
T 3mva_O 247 LFSLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLS-T 322 (343)
T ss_dssp HHTTTCCHHHHHHHHHTCGGGGGSC-HHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSS-S
T ss_pred HHHcCCCHHHHHHHHHhCCchhccc-HHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCC-C
Confidence 79999999999999999999999 5789999999999 99999999999999999999 99999988887653111 1
Q ss_pred CCccccccCHHHHHHHhcCC
Q 010604 462 FPLSLFIPTDECFCQKWAGT 481 (506)
Q Consensus 462 ~~Ls~L~~sdk~F~~r~~~~ 481 (506)
..+..|.+||++|+++|.+.
T Consensus 323 ~~~~~l~~s~~~F~~~~~~~ 342 (343)
T 3mva_O 323 LNITLLSWSKKRYEAKLKKL 342 (343)
T ss_dssp SCGGGGGSCHHHHHHHHHHT
T ss_pred CcchhhcCCHHHHHHHHhcc
Confidence 12344579999999999654
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=2.1e-46 Score=374.28 Aligned_cols=257 Identities=21% Similarity=0.409 Sum_probs=211.6
Q ss_pred HHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCCccccccccccccccccccccchhhhHHHHH
Q 010604 230 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLV 309 (506)
Q Consensus 230 ~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~ 309 (506)
.+.++||.++|++.++|.+....+|.+|..++++++.|+++||+++|++.++|++++.++|.+|++++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 3667777777777777766666666667777777777777777777777777777777777777777776 777777775
Q ss_pred HhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhhhccccceecccccchHHHHHHH-HHhcCC
Q 010604 310 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGMR 388 (506)
Q Consensus 310 ~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k~P~lL~~sie~~L~~kvefL-~~lGfs 388 (506)
++|++..++.+++.++|++|+.+++. ++++++||++++|++.+++.+++.++|.+++.+. +.++++++++ .++||+
T Consensus 85 -~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 85 -SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGFK 161 (270)
T ss_dssp -HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCCC
T ss_pred -HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCCC
Confidence 67777777777777777777777763 7777777755788888888888888888888884 5789999986 589999
Q ss_pred hHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHHHHHHHhhc--CCCCC---CC
Q 010604 389 NSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKK--APKGP---FP 463 (506)
Q Consensus 389 ~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~~--l~k~~---~~ 463 (506)
.+++..||.++|+||++| +++|++|++||+++||+++++|+++|++|+||+| ||+|||+|+++|+. +.+.. ++
T Consensus 162 ~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~ 239 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS 239 (270)
T ss_dssp HHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC
T ss_pred HHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC
Confidence 999999999999999999 5899999999999999999999999999999999 99999999999974 33322 35
Q ss_pred cccc-ccCHHHHHHHhcCCChHHHHHHHHH
Q 010604 464 LSLF-IPTDECFCQKWAGTTVDKYLAFRQK 492 (506)
Q Consensus 464 Ls~L-~~sdk~F~~r~~~~sve~y~~f~~~ 492 (506)
|+++ .+||+.|+++|+++++|+|+.|++.
T Consensus 240 L~~~l~~sd~~F~~~~~~~~~eey~~f~k~ 269 (270)
T 3m66_A 240 LDKLVSIPDEIFCEEIAKASVQDFEKFLKT 269 (270)
T ss_dssp HHHHHHSCHHHHHHHTTCSCHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHhcCCHHHHHHHHhc
Confidence 5555 5999999999999999999999974
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=317.59 Aligned_cols=226 Identities=21% Similarity=0.330 Sum_probs=188.5
Q ss_pred chHHHHHHHHHcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhh
Q 010604 264 NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCI 343 (506)
Q Consensus 264 ~L~p~v~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~ 343 (506)
.+...+.+|.++|+++.+|+++++.+|.++.. ++.++|.||. .+|++.+.|++||.++|++|.++++ .+++++.
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~ 118 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence 35566677777777777777777777777653 3566777775 6788888888888888888877776 4778888
Q ss_pred hhhhhcCCChhhHHHhhhccccceecccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 010604 344 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 422 (506)
Q Consensus 344 fL~k~LG~s~~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~m 422 (506)
|| +++|++.+++.+++.++|++|+++. +.+..++.+|. ++||+.++|..||.++|+||++| +++|++|++||+++|
T Consensus 119 fL-~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 119 YL-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRM 195 (335)
T ss_dssp HH-HHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTT
T ss_pred HH-HHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHh
Confidence 88 5789998889999999999999885 57888899886 79999999999999999999999 689999999999999
Q ss_pred CCchHHHhhcCceeecCccCchHHHHHHHHHhhcCCCC----C-----CCcccc-ccCHHHHHHHhcCCChHHHHHHHHH
Q 010604 423 HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG----P-----FPLSLF-IPTDECFCQKWAGTTVDKYLAFRQK 492 (506)
Q Consensus 423 g~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~~l~k~----~-----~~Ls~L-~~sdk~F~~r~~~~sve~y~~f~~~ 492 (506)
|+++.+|++ |.+|+||++ ||+|||.||+.||..+.. . .+|..| ..||+.||.++|++|+++|+.|++
T Consensus 196 gl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k- 272 (335)
T 4fp9_B 196 GIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKK- 272 (335)
T ss_dssp CCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHH-
T ss_pred CCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHH-
Confidence 999999997 999999999 999999999999875321 1 235555 489999999999999999999986
Q ss_pred HhhHHHHHH
Q 010604 493 LLLKDFAKK 501 (506)
Q Consensus 493 ll~~~~~~~ 501 (506)
+++++..++
T Consensus 273 ~~~~e~~~~ 281 (335)
T 4fp9_B 273 LLAREEEES 281 (335)
T ss_dssp HHHHHHHCC
T ss_pred HHHhhhhcc
Confidence 888877543
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=4.1e-34 Score=295.01 Aligned_cols=254 Identities=21% Similarity=0.340 Sum_probs=226.3
Q ss_pred CChHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHH
Q 010604 192 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAF 271 (506)
Q Consensus 192 ~~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~f 271 (506)
..++.+++||.++|++.+++ ++++|.++..+++++.+.++||.++|++.++|++++.++|.+|..+. ++|.|+++|
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f 92 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDMA---RKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL 92 (343)
T ss_dssp ---CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHHH---HHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence 35779999999999997665 56789998888899999999999999999999999999999999996 689999999
Q ss_pred HHHcCCCCccccccccccccc-cccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcC
Q 010604 272 LISLGIPNSKIGQIIAATPSL-FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG 350 (506)
Q Consensus 272 L~~lGls~~~I~kll~~~P~i-L~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG 350 (506)
|+++|+++++|+++|.++|++ ++.+.++++.|++.||+ ++|++.+++.+++..+|++|+.+++.. ++++.+| +++|
T Consensus 93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L-~~lg 169 (343)
T 3mva_O 93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFL-QAAG 169 (343)
T ss_dssp HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHH-HHHH
T ss_pred HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHH-HHhC
Confidence 999999999999999999995 44444347999999997 899999999999999999999999864 8889998 5655
Q ss_pred CC------hhhHHHhhhccccceecccccchHHHHHHHH-HhcCChHHHHHHHHhcc-chhccCccccHHHHHHHHHH--
Q 010604 351 AP------RDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLT-QVLSLSLEDNLKPKYTYLIN-- 420 (506)
Q Consensus 351 ~s------~~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~eev~~mv~r~P-~iL~~Sle~~Lk~K~efLv~-- 420 (506)
++ .+.+.+|+.++|.+++.+ +++++++++||+ .+|++.+++..+|.+.| .++.++ .+.+++++.|+++
T Consensus 170 v~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~ 247 (343)
T 3mva_O 170 LSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKL 247 (343)
T ss_dssp HHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHH
T ss_pred CCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHH
Confidence 53 678999999999999999 899999999999 59999999999999865 799999 5899999999998
Q ss_pred -HhCCchH----HHhhcCceeecCccCchHHHHHHHHHhhc
Q 010604 421 -ELHNEVQ----SLTKYPMYLSLSLDQRIRPRHRFLVSLKK 456 (506)
Q Consensus 421 -~mg~~~~----~I~k~P~lL~ySLEkRI~PR~~fL~~L~~ 456 (506)
.+|++.+ .+.++|.+|++|.|+ |+|+++|+.. ++
T Consensus 248 ~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~-mg 286 (343)
T 3mva_O 248 FSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLME-EN 286 (343)
T ss_dssp HTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHT-TT
T ss_pred HHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHHHH-cC
Confidence 6899865 469999999999985 9999999998 54
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=3.3e-33 Score=278.77 Aligned_cols=218 Identities=21% Similarity=0.342 Sum_probs=202.9
Q ss_pred HHHHHHHHhCCCChHHHHHHHhhcCcccccccc-CHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHH
Q 010604 195 LPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI 273 (506)
Q Consensus 195 ~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e-~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~ 273 (506)
.+++++|.++|++.++|.+.....|.+|.++++ ++.|+++||.++|++.++|++++.++|.+|.+++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 478999999999999997776666777999986 899999999999999999999999999999999976 999999999
Q ss_pred HcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCCh
Q 010604 274 SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPR 353 (506)
Q Consensus 274 ~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~ 353 (506)
++|++.++|++++.++|++|+.++++ +++++.||++++|++.+++.+++.++|.+|+.+++ .+.+++.++.+++|++.
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~ 162 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKH 162 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCH
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999985 99999999668999999999999999999999988 48889998768999999
Q ss_pred hhHHHhhhccccceecccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 010604 354 DDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 421 (506)
Q Consensus 354 ~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~ 421 (506)
+++..|+.++|+++++|. ++++++++||. +||++.++| .++|.+|++|++ +|+||+.||..-
T Consensus 163 ~ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~L 225 (270)
T 3m66_A 163 NEIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTYL 225 (270)
T ss_dssp HHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHHh
Confidence 999999999999999995 79999999996 799999876 589999999986 999999999863
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=222.48 Aligned_cols=181 Identities=18% Similarity=0.346 Sum_probs=118.5
Q ss_pred hHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHH
Q 010604 194 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI 273 (506)
Q Consensus 194 ~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~ 273 (506)
+..++.+|.++||++++|++++..+|.++ ..++.+++.||.++|++..+|.+||.++|.||..++ ++|.++++||+
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il---~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~fL~ 121 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGAS---LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQ 121 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCC---HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccc---hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HHHHHHHHHHH
Confidence 44455555555555555555555555443 233445555555555555555555555555555555 34555555555
Q ss_pred HcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCCh
Q 010604 274 SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPR 353 (506)
Q Consensus 274 ~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~ 353 (506)
++|++..+|.+++.++|++|+++.++ +..++.+|..++||+.
T Consensus 122 ~lGl~~~~i~~ll~~~P~lL~~s~e~--------------------------------------i~~~v~~L~~~lGfS~ 163 (335)
T 4fp9_B 122 KLGLGEGKLKRVLYCCPEIFTMRQQD--------------------------------------INDTVRLLKEKCLFTV 163 (335)
T ss_dssp HTTCTTTTHHHHHHHCGGGGTSCHHH--------------------------------------HHHHHHHHHHTSCCCH
T ss_pred HcCCCHHHHHHHHHhCchhhccChHH--------------------------------------HHHHHHHHHHHcCCCH
Confidence 55555555555555555555554432 3344445546789999
Q ss_pred hhHHHhhhccccceecccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 010604 354 DDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 424 (506)
Q Consensus 354 ~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~ 424 (506)
+++..||.++|++|.++ .++|++|++||. .||++.++|. + |++|+||++ +|++|+.||.. +|.
T Consensus 164 ~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 164 QQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR 227 (335)
T ss_dssp HHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred HHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence 99999999999999998 568999999997 7999999875 3 999999984 89999999986 443
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.51 E-value=3.6e-13 Score=120.62 Aligned_cols=183 Identities=25% Similarity=0.407 Sum_probs=154.4
Q ss_pred hhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhhhccccceecccccchHHHHHHHH-HhcCCh
Q 010604 311 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRN 389 (506)
Q Consensus 311 ~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k~P~lL~~sie~~L~~kvefL~-~lGfs~ 389 (506)
-+|+.++-+.-++.+.|++|...+. .++.+-.+| ..+|+.+..+..++--+|.++++. ...+...+..|+ +.-|+.
T Consensus 42 llglnpepvcvvlkkspqllklpim-qmrkrssyl-qklglgegklkrvlyccpeiftmr-qqdindtvrllkekclftv 118 (239)
T 4fzv_B 42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEKCLFTV 118 (239)
T ss_dssp HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHHSCCCH
T ss_pred hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHH-HHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHhHHhhH
Confidence 5799999999999999999877664 366667788 479999988888888899999877 567888888887 578999
Q ss_pred HHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCceeecCccCchHHHHHHHHHhhcCC----CC----C
Q 010604 390 SDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP----KG----P 461 (506)
Q Consensus 390 eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~~~~I~k~P~lL~ySLEkRI~PR~~fL~~L~~l~----k~----~ 461 (506)
.++-+++..||.+|.-++ ..+.-|+.|-.-.||+.+-+|++ ..+|.||+. .|+.||-+++.|++.+ ++ |
T Consensus 119 qqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqip 195 (239)
T 4fzv_B 119 QQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP 195 (239)
T ss_dssp HHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSC
T ss_pred HHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCC
Confidence 999999999999999997 68999999999999999999988 578999997 6999999999998643 22 2
Q ss_pred CCc-cc-cccCHHHHHHHhcCCChHHHHHHHHHHhhHHHHH
Q 010604 462 FPL-SL-FIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAK 500 (506)
Q Consensus 462 ~~L-s~-L~~sdk~F~~r~~~~sve~y~~f~~~ll~~~~~~ 500 (506)
.|+ .. +..++.+|+++-+.+++|+|+.|++ +++++..|
T Consensus 196 npllkdilrvseaeflartactsveefqvfkk-llareeee 235 (239)
T 4fzv_B 196 NPLLKDILRVSEAEFLARTACTSVEEFQVFKK-LLAREEEE 235 (239)
T ss_dssp CCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHH-HHHHHHHH
T ss_pred ChHHHHHHHHhHHHHHHHHhcccHHHHHHHHH-HHhhhhhh
Confidence 344 33 4689999999999999999999996 88887665
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.21 E-value=3.1e-06 Score=75.91 Aligned_cols=139 Identities=22% Similarity=0.423 Sum_probs=94.0
Q ss_pred HHHcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCC
Q 010604 272 LISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA 351 (506)
Q Consensus 272 L~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~ 351 (506)
+.-+|+.++-+.-++.+.|++|...+.. ++.+-.||+ .+|+.+..+.+++--||.+++++-. .++..+..|...+-|
T Consensus 40 fillglnpepvcvvlkkspqllklpimq-mrkrssylq-klglgegklkrvlyccpeiftmrqq-dindtvrllkekclf 116 (239)
T 4fzv_B 40 FILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLF 116 (239)
T ss_dssp HHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHHHHSCC
T ss_pred HHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHH-HhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHHHhHHh
Confidence 3345666666666666666666655542 555666664 5666666666666666666665544 355556666556677
Q ss_pred ChhhHHHhhhccccceecccccchHHHHHHH-HHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 352 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 352 s~~ev~~ml~k~P~lL~~sie~~L~~kvefL-~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
+..++.+++..+|.++.... ..+.-|+.|- -+||+...+|.+ ...|.||+ .+|+.+.-||..
T Consensus 117 tvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiyler 179 (239)
T 4fzv_B 117 TVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLER 179 (239)
T ss_dssp CHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHHH
Confidence 77778888888888887765 4677777775 478888887642 45788996 789999998876
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=91.73 E-value=0.041 Score=55.76 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=4.3
Q ss_pred eEEEeeccc
Q 010604 32 FVVLSTHSN 40 (506)
Q Consensus 32 ~~~~~~~~~ 40 (506)
...+.+..|
T Consensus 305 L~~L~l~~N 313 (386)
T 2ca6_A 305 LLFLELNGN 313 (386)
T ss_dssp CCEEECTTS
T ss_pred ceEEEccCC
Confidence 344555544
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=83.13 E-value=6 Score=33.97 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=64.2
Q ss_pred hhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhh-----hhcCCChhhHHHhhhccccceecccccchHH
Q 010604 303 PTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS-----KELGAPRDDVVKMVTKHPQLLHYSIDDGLLP 377 (506)
Q Consensus 303 p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~-----k~LG~s~~ev~~ml~k~P~lL~~sie~~L~~ 377 (506)
..|..|. ++||+...+.+.+...-. ..+..++||. .+.|++...+-..+..+..-- .....-..
T Consensus 10 ~~v~~l~-~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~--~~~~~~~~ 78 (118)
T 4ae4_A 10 QCVETVV-NMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSE--EKMMEFLQ 78 (118)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCH--HHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCc--cccccCHH
Confidence 4677775 899999888888765421 2334455553 245777665544443221100 00012345
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 378 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 378 kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
.+.-|.+|||+.+.+..+++.+ ...+..-+++|....|
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhcc
Confidence 6888899999999999998876 5678888888876543
No 11
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=80.73 E-value=1.2 Score=45.78 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=36.1
Q ss_pred cccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCC
Q 010604 225 NVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN 279 (506)
Q Consensus 225 ~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lGls~ 279 (506)
........++.|.++|++...+.+.+.. .. +++..-++||-+ |++.
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a-------~~-nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRA-------SY-NNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHH-------SC-SSTTHHHHTTTT-SSTT
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHH-------cC-CCHHHHHHHHHh-CCCc
Confidence 3457889999999999999999987764 33 578888999964 5654
No 12
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=80.34 E-value=1.2 Score=42.06 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=33.6
Q ss_pred hHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCC--CChHhHHHHHh
Q 010604 194 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVG--VKQRDVRRILL 251 (506)
Q Consensus 194 ~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slG--vs~~~l~~iv~ 251 (506)
...|-.+|...|+.+..++.|..-.| +++.+.-..+-++. ++..+|..|+.
T Consensus 160 v~aVrELL~~~gLheFEiAqLANLcP-------eTaDEARALIPSL~~k~sDEeLqeILd 212 (221)
T 3hou_D 160 VGAVIQLLKSTGLHPFEVAQLGSLAC-------DTADEAKTLIPSLNNKISDDELERILK 212 (221)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHSCC-------CSHHHHHHHCTTCTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHhheecccCC-------CCHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 34566777889999999988876444 55555555555554 56666665543
No 13
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=74.51 E-value=3.6 Score=30.54 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.5
Q ss_pred ccccceecccccchHHHHHHHHHhcCChHHHHHHHHhc
Q 010604 362 KHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 399 (506)
Q Consensus 362 k~P~lL~~sie~~L~~kvefL~~lGfs~eev~~mv~r~ 399 (506)
..|.+-. ..+..|++||++-|++.+||..++.|.
T Consensus 21 ~dp~V~~----sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 21 QNSRVRQ----SPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HCTTGGG----SCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CChhhhc----CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4566553 457899999999999999999988763
No 14
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=72.07 E-value=0.78 Score=51.25 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCch
Q 010604 411 LKPKYTYLINELHNEV 426 (506)
Q Consensus 411 Lk~K~efLv~~mg~~~ 426 (506)
|..=+-||+|..|++.
T Consensus 896 IVEFYIyLVN~e~~dR 911 (956)
T 4aco_A 896 IVEFYIYLVNHESLDR 911 (956)
T ss_dssp ----------------
T ss_pred eEEEEEEEecccchhH
Confidence 4444455555555543
No 15
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=71.13 E-value=22 Score=30.44 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHH------HCCCChHhHHHHHhhCCcccccCcccchHHHH
Q 010604 196 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLL------SVGVKQRDVRRILLRQPQILEYTVENNLESHV 269 (506)
Q Consensus 196 ~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~------slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v 269 (506)
.+++-|.++||+...+.+.+... . .++...++||. ..|++..++...+..+..--... ..-...+
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~------g-~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~v 80 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAA------G-ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQLM 80 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH------C-SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH------C-cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHHH
Confidence 56888999999999998887653 1 25666666664 45777777776665432100000 0112346
Q ss_pred HHHHHcCCCCccccccccccccccccccccchhhhHHHHHHh
Q 010604 270 AFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE 311 (506)
Q Consensus 270 ~fL~~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~ 311 (506)
.-|.++|++.+.+.+.|..+- +++...++||...
T Consensus 81 ~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~~ 114 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHHh
Confidence 667778888888877776642 2455677777543
No 16
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=66.34 E-value=6.1 Score=29.28 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHCCCChHhHHHHHhh
Q 010604 228 SARERLEYLLSVGVKQRDVRRILLR 252 (506)
Q Consensus 228 ~l~~kL~fL~slGvs~~~l~~iv~~ 252 (506)
.+..+++||++.|++..+|...+.+
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 5789999999999999999888765
No 17
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.18 E-value=9.9 Score=27.23 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=29.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 374 GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 374 ~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
....+++-|.+|||+++++..+++.+ ...+..-++||..
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTT--------TSCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 35678888999999999998888765 2356677788875
No 18
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=65.16 E-value=12 Score=30.22 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 375 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 375 L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
-..+|+-|..|||+++++..+++.+ ...+..-++||....|
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 3678999999999999999988855 3458899999998877
No 19
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=65.03 E-value=4 Score=37.86 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=31.8
Q ss_pred ChHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCC--CChHhHHHHHh
Q 010604 193 KWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVG--VKQRDVRRILL 251 (506)
Q Consensus 193 ~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slG--vs~~~l~~iv~ 251 (506)
....++..|..+|+++..+..|+.-.| +++.+.-..+-++. ++..+|..|+.
T Consensus 125 sa~elre~L~~~kL~efE~aqLaNL~P-------eTadEaraLIpSle~rlsdEeLeeILd 178 (187)
T 1y14_A 125 TVGAVIQLLKSTGLHPFEVAQLGSLAC-------DTADEAKTLIPSLNNKISDDELERILK 178 (187)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHSCC-------SSHHHHHHHSGGGTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHcCcCCC-------CCHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 344667788889999999999887554 33333333333332 45566655543
No 20
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.08 E-value=12 Score=28.52 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 375 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 375 L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
-...|+.+..|||+.++..++++.. ..+|.+-.++|-..+.
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 3567899999999999999999876 4678889999877653
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=63.90 E-value=7.7 Score=30.23 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=28.4
Q ss_pred hccccceecccccchHHHHHHHHHhcCChHHHHHHHHhc
Q 010604 361 TKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 399 (506)
Q Consensus 361 ~k~P~lL~~sie~~L~~kvefL~~lGfs~eev~~mv~r~ 399 (506)
-..|.+-. ..+..|++||++-|++.+||..++.+.
T Consensus 25 Lqdp~V~~----sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 25 LQNSRVRQ----SPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HCSTTGGG----SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCChhhhh----CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 34666553 457899999999999999999999875
No 22
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=62.77 E-value=1.4 Score=35.28 Aligned_cols=9 Identities=0% Similarity=-0.108 Sum_probs=4.1
Q ss_pred cCCcccccc
Q 010604 97 VNGSKYRSQ 105 (506)
Q Consensus 97 ~~~~~~~~~ 105 (506)
|..+.++++
T Consensus 41 ydKV~R~Kn 49 (79)
T 1nh2_C 41 YDKVTRTKA 49 (79)
T ss_dssp EEEEEEETT
T ss_pred EEEEeeecc
Confidence 344445444
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=62.10 E-value=10 Score=27.69 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=29.1
Q ss_pred ccchHHHHHHHHHhcC-ChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 372 DDGLLPRINFLRSIGM-RNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 372 e~~L~~kvefL~~lGf-s~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
+..+..+++-|.+||| +++.+..++..+ ...+..-++||..
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 4556778888889999 777766666644 2457777777765
No 24
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.05 E-value=13 Score=28.02 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 375 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 375 L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
-..+++-|..|||+++++.++++.+ ...+..-++||...+.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRAT--------NNSLERAVDWIFSHID 49 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHT--------TSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 3567888999999999998888865 2357788899987654
No 25
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.32 E-value=15 Score=27.82 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 421 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~ 421 (506)
...|+.|..|||+++++..++..+ ...+..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 457888889999999988877755 34688888888875
No 26
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=59.28 E-value=14 Score=25.39 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHH
Q 010604 377 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLI 419 (506)
Q Consensus 377 ~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv 419 (506)
.+++-|.+|||+++++.+++..+ ...+..-++||.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~L~ 40 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC--------NWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CcCHHHHHHHHH
Confidence 56778888999988888777754 234666666664
No 27
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=58.15 E-value=16 Score=26.47 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=27.9
Q ss_pred ccchHHHHHHHHHhcC-ChHHHHHHHHhccchhccCccccHHHHHHHHH
Q 010604 372 DDGLLPRINFLRSIGM-RNSDILKVLRSLTQVLSLSLEDNLKPKYTYLI 419 (506)
Q Consensus 372 e~~L~~kvefL~~lGf-s~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv 419 (506)
+..+..+++-|.+||| +++.+..++..+ ...+..-++||.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gn~e~A~e~L~ 49 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIAT--------GGDINAAIERLL 49 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 4567788999999999 777766666644 235666666664
No 28
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=58.08 E-value=11 Score=29.57 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 010604 373 DGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 421 (506)
Q Consensus 373 ~~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~ 421 (506)
.....+|+-|..|||+++++..+++.+ ...+..-++||.+.
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQ 67 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 456788899999999999999888865 34677888888753
No 29
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=56.26 E-value=18 Score=28.20 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 422 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~m 422 (506)
..+++.|..|||+++++.++++.+ ..++..-++||.+..
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHhCC
Confidence 568889999999999998888765 346788888887653
No 30
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=55.30 E-value=2.5 Score=46.51 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.2
Q ss_pred CCchhhhhh
Q 010604 136 QGAQEQLDI 144 (506)
Q Consensus 136 ~~~~~~~~~ 144 (506)
+...+++|+
T Consensus 348 ~~~~~KLD~ 356 (649)
T 3tj1_A 348 KELSTKLDS 356 (649)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334455554
No 31
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=54.58 E-value=11 Score=29.26 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHCCCChHhHHHHHhhC
Q 010604 228 SARERLEYLLSVGVKQRDVRRILLRQ 253 (506)
Q Consensus 228 ~l~~kL~fL~slGvs~~~l~~iv~~~ 253 (506)
.+..+++||++.|++..+|...+.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 58899999999999999999988874
No 32
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.59 E-value=24 Score=28.24 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 424 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~ 424 (506)
...++-|..|||+++.+.+++..+ ...+..-++||.+.+.-
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t--------~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN--------HMSVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCCCC
Confidence 457888999999999998888754 24688889999987653
No 33
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.78 E-value=27 Score=27.28 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcc-ccHHHHHHHHHHHhCC
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLE-DNLKPKYTYLINELHN 424 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle-~~Lk~K~efLv~~mg~ 424 (506)
...++-|..|||+++.+.++++.+ . ..+..-++||.+.+.-
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t--------~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYT--------GNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHH--------TSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCCHHHHHHHHHhCCCC
Confidence 457888899999999998888755 2 2588899999987653
No 34
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.64 E-value=29 Score=25.41 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=29.4
Q ss_pred ccchHHHHHHHHHhcCChHH-HHHHHHhccchhccCccccHHHHHHHHHHH
Q 010604 372 DDGLLPRINFLRSIGMRNSD-ILKVLRSLTQVLSLSLEDNLKPKYTYLINE 421 (506)
Q Consensus 372 e~~L~~kvefL~~lGfs~ee-v~~mv~r~P~iL~~Sle~~Lk~K~efLv~~ 421 (506)
+..+..+++-|..|||+.++ ..+++... ...+..-+++|...
T Consensus 6 ~~~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 6 SGHFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQS 48 (54)
T ss_dssp CCSSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 34567889999999997765 35555533 34677778888764
No 35
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=49.74 E-value=30 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc
Q 010604 375 LLPRINFLRSIGMRNSDILKVLRSL 399 (506)
Q Consensus 375 L~~kvefL~~lGfs~eev~~mv~r~ 399 (506)
...+++-|..|||+++++..++..+
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3457778888899888887766644
No 36
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=48.90 E-value=3.6 Score=46.04 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=0.0
Q ss_pred CCcccccc
Q 010604 46 TNRKSRYG 53 (506)
Q Consensus 46 ~~~~~~~~ 53 (506)
|.|+-+++
T Consensus 664 ~~~~~kr~ 671 (956)
T 4aco_A 664 TSRRTKRP 671 (956)
T ss_dssp --------
T ss_pred cccccccc
Confidence 34444443
No 37
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.53 E-value=20 Score=25.14 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
...++-|.+|||+++.+..+++.+ + .+..-++||..
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~-----n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S-----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C-----SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C-----CHHHHHHHHHc
Confidence 457888889999999888888765 1 36666777653
No 38
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=46.27 E-value=42 Score=37.32 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=23.9
Q ss_pred hCCCChHHHHHHHhhcCccccccccCHHHHHHHHH-HCCCChHhHHHHHhhC
Q 010604 203 TFGLKESHFIQMYERHMPSLQINVCSARERLEYLL-SVGVKQRDVRRILLRQ 253 (506)
Q Consensus 203 s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~-slGvs~~~l~~iv~~~ 253 (506)
.+||++.|+..|-...-- - --.+.+...+-.|. ..|+++.++..|-+.+
T Consensus 286 ~~gls~~qvvaIAsn~GG-k-QALetV~~llp~L~~~~gltp~qvVaIAsn~ 335 (1047)
T 3ugm_A 286 AHGLTPDQVVAIASHGGG-K-QALETVQRLLPVLCQAHGLTPDQVVAIASHD 335 (1047)
T ss_dssp HHCCCHHHHHHHHSSTTH-H-HHHHHHHHHHHHHHHHTCCCHHHHHHHHSSS
T ss_pred cccCCHHHHHHHHhcCch-H-HHHHHHHHHHHHHHhhcCCCHHHheeecccC
Confidence 378888888877643100 0 00122222232333 3566666666665544
No 39
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=46.00 E-value=6.3 Score=40.38 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=29.6
Q ss_pred CChHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHH
Q 010604 192 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS 238 (506)
Q Consensus 192 ~~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~s 238 (506)
..-...|+-|.++||+..++.+.++.. ..++...++||.+
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~-------~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRAS-------YNNPHRAVEYLLT 205 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHS-------CSSTTHHHHTTTT
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHh
Confidence 345577899999999999999988752 2355666777753
No 40
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.17 E-value=24 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 377 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 377 ~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
..++-|..|||+++++.+++..+-. ..+..-++||.+.++
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~-------~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG-------RSVQTACDWLFSHSG 60 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT-------SCHHHHHHHHHSCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CCHHHHHHHHHhCCC
Confidence 4678888899999988888775411 267888888876543
No 41
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=45.00 E-value=30 Score=25.77 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=28.8
Q ss_pred ccchHHHHHHHHHhcCC-hHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 372 DDGLLPRINFLRSIGMR-NSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 372 e~~L~~kvefL~~lGfs-~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
+..+..+++-|.+|||+ ++.+.++++.. ...+..-++||..
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~--------~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 45678899999999996 44546655533 3467777887765
No 42
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=44.52 E-value=21 Score=39.61 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=37.3
Q ss_pred CCCChHhHHHHHhhCCcccccCcccchHHHHHHHH-HcCCCCccccccccccccccccccccchhhhHHHHHHhhCCChh
Q 010604 239 VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI-SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEK 317 (506)
Q Consensus 239 lGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~-~lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~ 317 (506)
.|++.+++..|-+.+----. + +.+...+..|. ..|++.++|.+|-..+-.- .-++ .+..-.-.|.+..|+++.
T Consensus 253 ~gls~~qvVaIAsn~GGkQA--L-eaV~~llp~L~~~~gls~~qvvaIAsn~GGk--QALe-tV~~llp~L~~~~gltp~ 326 (1047)
T 3ugm_A 253 HGLPPDQVVAIASNIGGKQA--L-ETVQRLLPVLCQAHGLTPDQVVAIASHGGGK--QALE-TVQRLLPVLCQAHGLTPD 326 (1047)
T ss_dssp SCCCHHHHHHHHSSTTHHHH--H-HHHHHHSHHHHHHHCCCHHHHHHHHSSTTHH--HHHH-HHHHHHHHHHHHTCCCHH
T ss_pred cCCCHHHHHHHHhcCcchHH--H-HHHHHHhhhhhccccCCHHHHHHHHhcCchH--HHHH-HHHHHHHHHHhhcCCCHH
Confidence 67777777766553211000 0 12222222333 3677777776654332110 0011 122333334445677777
Q ss_pred hHHHHHhhC
Q 010604 318 SLGKVVQLS 326 (506)
Q Consensus 318 ~l~~lI~~~ 326 (506)
+|..|-.++
T Consensus 327 qvVaIAsn~ 335 (1047)
T 3ugm_A 327 QVVAIASHD 335 (1047)
T ss_dssp HHHHHHSSS
T ss_pred HheeecccC
Confidence 766665443
No 43
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.51 E-value=35 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 010604 377 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 424 (506)
Q Consensus 377 ~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~ 424 (506)
..++-|.+|||+++.+.+++... .. ..+..-++||...+.-
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t-----~n--~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAAT-----GR--KTAEEALAWLHDHCND 51 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh-----CC--CCHHHHHHHHHhCCCC
Confidence 35677888999998888877644 11 2688889999887653
No 44
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=42.83 E-value=4 Score=32.32 Aligned_cols=8 Identities=0% Similarity=-0.051 Sum_probs=3.3
Q ss_pred CCcccccc
Q 010604 98 NGSKYRSQ 105 (506)
Q Consensus 98 ~~~~~~~~ 105 (506)
..+.++++
T Consensus 40 dKV~R~Kn 47 (76)
T 1nvp_C 40 DKIHRSKN 47 (76)
T ss_dssp EEEEEETT
T ss_pred EEEeccCc
Confidence 33444444
No 45
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=40.69 E-value=7 Score=36.31 Aligned_cols=15 Identities=0% Similarity=-0.252 Sum_probs=3.6
Q ss_pred cCCccccccCCCCCC
Q 010604 45 KTNRKSRYGQTLSLY 59 (506)
Q Consensus 45 ~~~~~~~~~~~~~~~ 59 (506)
.+|.+...|.+.-.|
T Consensus 250 ~~~~~~~~g~tpl~~ 264 (282)
T 1oy3_D 250 PEPEDGGDKLSPCSS 264 (282)
T ss_dssp CCCCCC---------
T ss_pred CcCcCCCcccccccc
Confidence 366666666443333
No 46
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.09 E-value=36 Score=26.21 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=30.6
Q ss_pred ccchHHHHHHHHHhcCChHHH-HHHHHhccchhccCccccHHHHHHHHHHH
Q 010604 372 DDGLLPRINFLRSIGMRNSDI-LKVLRSLTQVLSLSLEDNLKPKYTYLINE 421 (506)
Q Consensus 372 e~~L~~kvefL~~lGfs~eev-~~mv~r~P~iL~~Sle~~Lk~K~efLv~~ 421 (506)
+..+...++-|..|||+..+. .++++.. ...+..-++||.+.
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~at--------~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIAT--------DGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 567788999999999976654 4554433 35788889988864
No 47
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=39.94 E-value=20 Score=31.97 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=30.0
Q ss_pred hcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhC
Q 010604 217 RHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQ 253 (506)
Q Consensus 217 r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~ 253 (506)
..|.++..+++.+++.+.-|...|+++++|+-++...
T Consensus 23 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 23 RSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 3677777788888888888888999999998877754
No 48
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=39.45 E-value=25 Score=25.78 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=26.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHH
Q 010604 374 GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLI 419 (506)
Q Consensus 374 ~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv 419 (506)
.+...|+.|.++||+++++.+++... ..++.--..+|.
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a--------~nnve~AaniLl 47 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIA--------QNNVEVARSILR 47 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 45578999999999999998887643 344554444444
No 49
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=38.89 E-value=7.1 Score=38.27 Aligned_cols=9 Identities=0% Similarity=-0.108 Sum_probs=4.4
Q ss_pred cCCcccccc
Q 010604 97 VNGSKYRSQ 105 (506)
Q Consensus 97 ~~~~~~~~~ 105 (506)
|+.+.|.++
T Consensus 248 ydKV~R~kn 256 (286)
T 1rm1_C 248 YDKVTRTKA 256 (286)
T ss_dssp EEEEEEETT
T ss_pred Eeeeeeccc
Confidence 444455554
No 50
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.59 E-value=44 Score=25.17 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 377 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 377 ~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
..++-|..|||+++.+.++++.+ .. ..+..-++||...+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t-----~~--~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHED 50 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh-----cC--CCHHHHHHHHHhCCC
Confidence 36777888999998888877733 11 358888888888754
No 51
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.48 E-value=37 Score=27.26 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 422 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~m 422 (506)
.+.++-|..|||+++.+.+++..+ ...+..-++||..++
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~--------n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN--------NMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHCc
Confidence 568888999999999988877533 346888899998754
No 52
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.26 E-value=50 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=30.1
Q ss_pred ccchHHHHHHHHHhcCC-hHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 372 DDGLLPRINFLRSIGMR-NSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 372 e~~L~~kvefL~~lGfs-~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
+..+..+|+-|..|||+ ++.+.++++.. ...+..-++||..
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t--------~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVAT--------DGDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 55678899999999995 56656666543 3568888888875
No 53
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=37.32 E-value=47 Score=23.34 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=25.4
Q ss_pred ccchHHHHHHHHHhcCCh-HHHHHHHHhccchhccCccccHHHHHHHHH
Q 010604 372 DDGLLPRINFLRSIGMRN-SDILKVLRSLTQVLSLSLEDNLKPKYTYLI 419 (506)
Q Consensus 372 e~~L~~kvefL~~lGfs~-eev~~mv~r~P~iL~~Sle~~Lk~K~efLv 419 (506)
+..+..+++-|..|||+. +.+.+++... ...+..-++||.
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL~~~--------~gnv~~Ave~L~ 44 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLL 44 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 345677888889999864 4445555533 245666666664
No 54
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.10 E-value=65 Score=23.72 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCc
Q 010604 378 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNE 425 (506)
Q Consensus 378 kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~~ 425 (506)
.++.|..+||+.+-+..+++.- . ...|++.++||.+ |+++
T Consensus 12 mlq~L~eMGFd~erae~Alk~T------g-~~Gle~AmewL~k-~~~~ 51 (54)
T 2cos_A 12 MLQELVNAGCDQEMAGRALKQT------G-SRSIEAALEYISK-MSGP 51 (54)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH------T-SCCHHHHHHHHHH-HSCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHh------C-cccHHHHHHHHHH-hcCC
Confidence 4566777788777666666533 1 1347777777765 4443
No 55
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=36.79 E-value=29 Score=24.69 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=20.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 010604 374 GLLPRINFLRSIGMRNSDILKVLR 397 (506)
Q Consensus 374 ~L~~kvefL~~lGfs~eev~~mv~ 397 (506)
.+...|+.|.++||+++++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 467789999999999999987765
No 56
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.55 E-value=62 Score=25.79 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
...++-|..|||+++.+.+++... .. ..+..-++||...+.
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t-----~n--~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINT-----SN--AGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-----TT--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-----cC--CCHHHHHHHHHhCCC
Confidence 567888899999999988877643 11 368889999998765
No 57
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.72 E-value=32 Score=25.26 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=28.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 374 GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 374 ~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
....+|+.|.++||+++++.+.+... ..++.--..+|.+
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a--------~nnve~Aa~iL~e 46 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIA--------HNNIEMAKNILRE 46 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh--------cCCHHHHHHHHHH
Confidence 45567999999999999998887644 3455555555554
No 58
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=35.59 E-value=19 Score=32.04 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=29.0
Q ss_pred hcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhC
Q 010604 217 RHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQ 253 (506)
Q Consensus 217 r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~ 253 (506)
..|.++..+++.+.+.+.-|...|+++++|+-++...
T Consensus 21 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 21 NAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 3577777778888888888888888888888777653
No 59
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=34.77 E-value=60 Score=33.27 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=15.4
Q ss_pred HHHhCCCChHHHHHHHhhcCccc
Q 010604 200 YLSTFGLKESHFIQMYERHMPSL 222 (506)
Q Consensus 200 fL~s~Gfs~~qI~~Ii~r~P~lL 222 (506)
-|..+||++.+|..|-+ +|..|
T Consensus 35 ~l~~~g~t~~~i~~is~-~~~al 56 (463)
T 4hpz_A 35 ALVGHGFTHAHIVALSQ-HPAAL 56 (463)
T ss_dssp HHHHTTCCHHHHHHHTT-STHHH
T ss_pred HHHhcCCCHHHHHHhhc-cHhHH
Confidence 45679999999988754 44433
No 60
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=32.81 E-value=86 Score=22.56 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCC-ChHHHHHHHhhcCccccccccCHHHHHHHHHHCCC
Q 010604 195 LPLLDYLSTFGL-KESHFIQMYERHMPSLQINVCSARERLEYLLSVGV 241 (506)
Q Consensus 195 ~~vl~fL~s~Gf-s~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGv 241 (506)
...|+-|.++|| +.....+.+... ..++...+++|.+.+.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t-------~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIAT-------GGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHH-------TSCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHHHcCC
Confidence 355788888888 666555555431 2367777888877654
No 61
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=29.78 E-value=98 Score=24.78 Aligned_cols=45 Identities=9% Similarity=0.052 Sum_probs=32.9
Q ss_pred ChHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHH-CC
Q 010604 193 KWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VG 240 (506)
Q Consensus 193 ~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~s-lG 240 (506)
.+..+-.|-+.+|+++.+|-.|-..||.-+ .+.....|.-+.. .|
T Consensus 11 ~~~~wK~~~R~LGlse~~Id~I~~~~~~d~---~Eq~~qmL~~W~~~~g 56 (86)
T 3oq9_A 11 TIQEAKKFARENNIKEGKIDEIMHDSIQDT---AEQKVQLLLCWYQSHG 56 (86)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHHTCTTCC---TTHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHcCCCHhHHHHHHHhCCCCh---HHHHHHHHHHHHHHhC
Confidence 455667788999999999999999988643 2556666666653 44
No 62
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=29.59 E-value=1e+02 Score=22.49 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHHcCC
Q 010604 228 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGI 277 (506)
Q Consensus 228 ~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~lGl 277 (506)
.+...++-|.++|+++.++.+.+... .+++.-.-.+|.++.+
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a--------~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIA--------QNNVEVARSILREFAF 51 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHhcC
Confidence 34466666777777776666554431 2455555556655544
No 63
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=28.91 E-value=45 Score=24.65 Aligned_cols=39 Identities=28% Similarity=0.255 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 374 GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 374 ~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
.....|+.|.++||+++++.+.+... ...|.--.++|.+
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia--------~Ndv~~AtNiLlE 44 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIA--------QNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHT--------TTCSHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHh--------cccHHHHHHHHHH
Confidence 45678899999999999998876532 2345555555554
No 64
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=28.70 E-value=12 Score=37.65 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=4.7
Q ss_pred ceEEEeeccc
Q 010604 31 RFVVLSTHSN 40 (506)
Q Consensus 31 ~~~~~~~~~~ 40 (506)
.++++.+++|
T Consensus 311 ~~~i~~~~~~ 320 (367)
T 3us3_A 311 QIGVVNVTDA 320 (367)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEecccc
Confidence 4455544444
No 65
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=27.88 E-value=2.1e+02 Score=29.57 Aligned_cols=114 Identities=11% Similarity=0.169 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHhhcCccccccccCHHHHHHHHHH-CCCChHhHHHHHhhCCcccccCcccchHHHHHHHH-HcCCCCcc
Q 010604 204 FGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI-SLGIPNSK 281 (506)
Q Consensus 204 ~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~s-lGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~-~lGls~~~ 281 (506)
+||++.|+..|-...-- .--.+.+...+..|.. .|+|..++..|-+..-- ..--+.+....--|+ ..|++.++
T Consensus 99 ~gLs~~qVVaIAsn~GG--kqALe~V~~~lpvL~~~~~Ls~~qVVaIAsn~GG---kQALeaV~~llpvL~~a~gls~~q 173 (499)
T 3v6t_A 99 HGLTPQQVVAIASHDGG--KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG---KQALETVQALLPVLCQAHGLTPEQ 173 (499)
T ss_dssp SCCCHHHHHHHHSSTTH--HHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHTSCCCHHH
T ss_pred cCCCHHHhhhhhhcCcc--HHHHHHHHHhhHHhhhhcCCCHHHhHHHhhcCCc---HHHHHHHHHhhHHHHHhcCCCHHH
Confidence 88888888777542100 0001334445555554 78888888776442110 000022333333444 37888877
Q ss_pred ccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhh
Q 010604 282 IGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQL 325 (506)
Q Consensus 282 I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~ 325 (506)
|..|-...-.- .-++ .++.-.-.|.+.+|++..+|..|-.+
T Consensus 174 VvaIAsN~GGk--QALe-aV~~llpvl~~~~gls~~qVVaiAsn 214 (499)
T 3v6t_A 174 VVAIASNGGGK--QALE-TVQRLLPVLCQAHGLTPQQVVAIASN 214 (499)
T ss_dssp HHHHHSSTTHH--HHHH-HHHHHHHHHHHHHCCCHHHHHHHHSS
T ss_pred HHHHhcccchH--HHHH-HHHHhhhhHHhhccCCHHHHHHHhhc
Confidence 76653322100 0011 13333344444477777777776543
No 66
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=27.86 E-value=15 Score=36.86 Aligned_cols=13 Identities=0% Similarity=-0.038 Sum_probs=6.7
Q ss_pred CceEEEeeccccc
Q 010604 30 PRFVVLSTHSNAK 42 (506)
Q Consensus 30 ~~~~~~~~~~~~~ 42 (506)
-.|+.+-...+++
T Consensus 282 i~F~~id~~~~~~ 294 (367)
T 3us3_A 282 LSIIWIDPDDFPL 294 (367)
T ss_dssp CCEEEECGGGCTT
T ss_pred eEEEEECCccchh
Confidence 4555555554543
No 67
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=25.62 E-value=17 Score=36.97 Aligned_cols=10 Identities=0% Similarity=0.059 Sum_probs=3.8
Q ss_pred HHHHHHHHCC
Q 010604 231 ERLEYLLSVG 240 (506)
Q Consensus 231 ~kL~fL~slG 240 (506)
..+..++.++
T Consensus 276 ~L~~~~~~i~ 285 (360)
T 3ay5_A 276 DIVDISDEIS 285 (360)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 3333333333
No 68
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=24.69 E-value=16 Score=33.91 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=19.4
Q ss_pred ccCHHHHHHHHHHCCCChHhHHHHHhhCCc
Q 010604 226 VCSARERLEYLLSVGVKQRDVRRILLRQPQ 255 (506)
Q Consensus 226 ~e~l~~kL~fL~slGvs~~~l~~iv~~~P~ 255 (506)
++.+....+.|.+.|+...++..|+.-+|.
T Consensus 123 ~Esa~elre~L~~~kL~efE~aqLaNL~Pe 152 (187)
T 1y14_A 123 QETVGAVIQLLKSTGLHPFEVAQLGSLACD 152 (187)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHcCcCCCC
Confidence 344444555666677777777777776665
No 69
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.88 E-value=1.5e+02 Score=21.76 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHhcCChHHH-HHHHHhccchhccCccccHHHHHHHHHH
Q 010604 372 DDGLLPRINFLRSIGMRNSDI-LKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 372 e~~L~~kvefL~~lGfs~eev-~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
++....+++-|.+|||...+. .++++++ ...+...++.|+.
T Consensus 6 ee~~a~~L~~L~eMGF~D~~~N~~aL~~~--------~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQLNLRLLKKH--------NYNILQVVTELLQ 47 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHHHHHHHHTTT--------TTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 455666888888888855543 3333322 3466777666665
No 70
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=23.83 E-value=1.3e+02 Score=25.54 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=36.9
Q ss_pred ChHHHHHHHHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCCCChHhHHHHHh
Q 010604 193 KWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILL 251 (506)
Q Consensus 193 ~~~~vl~fL~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~ 251 (506)
.+..+-.|-+.+||++.+|-.|-..||.-. .+.....|.-|....-....+..++.
T Consensus 19 ~~~~wK~laR~LGlse~~Id~I~~d~~~d~---~Eq~~qlLr~W~~~~G~~aa~~~Li~ 74 (115)
T 3ezq_A 19 TLSQVKGFVRKNGVNEAKIDEIKNDNVQDT---AEQKVQLLRNWHQLHGKKEAYDTLIK 74 (115)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHCSSCH---HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHcCCCCh---HHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456777888999999999999999888533 14555556666543324444444443
No 71
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=23.76 E-value=75 Score=26.94 Aligned_cols=40 Identities=15% Similarity=0.396 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
...++-|..|||+++++.+++..+ ...+..-++||...+.
T Consensus 79 e~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 79 EEIVAIITSMGFQRNQAIQALRAT--------NNNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH--------TSCHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 457788889999999988888754 2357778888877654
No 72
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=22.75 E-value=26 Score=34.80 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCChHHHHHHHhh
Q 010604 196 PLLDYLSTFGLKESHFIQMYER 217 (506)
Q Consensus 196 ~vl~fL~s~Gfs~~qI~~Ii~r 217 (506)
.+...|..+.|++.+|.+++..
T Consensus 142 ~l~~~~~~ikl~~k~id~Lv~~ 163 (339)
T 1sig_A 142 KLSEVFKQFRLVPKQFDYLVNS 163 (339)
T ss_dssp HHHHHHTTEEECHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHH
Confidence 3577888889999998888764
No 73
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=22.12 E-value=89 Score=32.08 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=48.0
Q ss_pred HHhCCCChHHHHHHHhhcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHHHHH--cCCC
Q 010604 201 LSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS--LGIP 278 (506)
Q Consensus 201 L~s~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~--lGls 278 (506)
|+.+|++..||.+|-.. . ...+..--+-|...||+..+|..| +++|.-| ..+...+.-|.. -+++
T Consensus 8 l~~lgys~~q~~k~k~~---~----~s~va~~h~~l~~~g~t~~~i~~i-s~~~~al-----~~va~~y~~l~aal~~lt 74 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIKPK---V----RSTVAQHHEALVGHGFTHAHIVAL-SQHPAAL-----GTVAVKYQDMIAALPEAT 74 (463)
T ss_dssp GGGGTCCHHHHHHHCGG---G----HHHHHHHHHHHHHTTCCHHHHHHH-TTSTHHH-----HHHHTTHHHHHHHSTTCC
T ss_pred HHHhccCHHHHHHhhHH---H----HHHHHHHHHHHHhcCCCHHHHHHh-hccHhHH-----HHHHHhhHHHHhhccccC
Confidence 57799999999997532 1 134556667888999999999975 4456644 233333333332 3556
Q ss_pred Ccccccccccc
Q 010604 279 NSKIGQIIAAT 289 (506)
Q Consensus 279 ~~~I~kll~~~ 289 (506)
.++|..+-..+
T Consensus 75 ~~~iV~ia~~~ 85 (463)
T 4hpz_A 75 HEAIVGVGKQW 85 (463)
T ss_dssp HHHHHHHHTST
T ss_pred HHHHHHHHhcc
Confidence 66666554444
No 74
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.86 E-value=58 Score=29.27 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=30.8
Q ss_pred hcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhC
Q 010604 217 RHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQ 253 (506)
Q Consensus 217 r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~ 253 (506)
..|.++..+++.+.+.+.-|...|+++++|+-++...
T Consensus 21 ~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 21 APPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp SCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 4677777888888888889999999999999887765
No 75
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=21.80 E-value=26 Score=24.82 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHH
Q 010604 377 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLI 419 (506)
Q Consensus 377 ~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv 419 (506)
..|+-|..|||++..+.+++..+ ......-.+||.
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~--------~~n~e~A~~~Lf 40 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFAC--------EKNENLAANFLL 40 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTT--------TSCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 45666778888888887766554 234555555554
No 76
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=21.44 E-value=1.4e+02 Score=30.83 Aligned_cols=114 Identities=11% Similarity=0.164 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHhhcCccccccccCHHHHHHHHHH-CCCChHhHHHHHhhCCcccccCcccchHHHHHHHHH-cCCCCcc
Q 010604 204 FGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS-LGIPNSK 281 (506)
Q Consensus 204 ~Gfs~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~s-lGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~fL~~-lGls~~~ 281 (506)
++|++.||..|...+--- --.+.+...+-.|.. .|+++.++..|-+..--- .-+ +.+...+..|.. .|++.++
T Consensus 65 l~ls~~qvvaIA~n~GGk--qAleaV~~l~p~L~~a~gLs~~qVVaIAsn~GGk--qAL-e~V~~~lpvL~~~~~Ls~~q 139 (499)
T 3v6t_A 65 LNLTPEQVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK--QAL-ETVQRLLPVLCQAHGLTPEQ 139 (499)
T ss_dssp TCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHHTSCCCHHH
T ss_pred cCCCHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhcCCCHHHhhhhhhcCccH--HHH-HHHHHhhHHhhhhcCCCHHH
Confidence 899999999987642100 001344455555655 899999999876653210 001 344445555654 8999999
Q ss_pred ccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhh
Q 010604 282 IGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQL 325 (506)
Q Consensus 282 I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~ 325 (506)
|..|-...-.- .-++ .++.-.-.|+...|++..+|..|-.+
T Consensus 140 VVaIAsn~GGk--QALe-aV~~llpvL~~a~gls~~qVvaIAsN 180 (499)
T 3v6t_A 140 VVAIASHDGGK--QALE-TVQALLPVLCQAHGLTPEQVVAIASN 180 (499)
T ss_dssp HHHHHSSTTHH--HHHH-HHHHHHHHHHHTSCCCHHHHHHHHSS
T ss_pred hHHHhhcCCcH--HHHH-HHHHhhHHHHHhcCCCHHHHHHHhcc
Confidence 98774321100 0011 23444455554689999999888654
No 77
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.58 E-value=2.1e+02 Score=25.54 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=58.5
Q ss_pred ChHHHHHHHHhCCCC-hHHHHHHHhhcCccccccccCHHHHHHHHHHCCCChHhHHHHHhhCCcccccCcccchHHHHHH
Q 010604 193 KWLPLLDYLSTFGLK-ESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAF 271 (506)
Q Consensus 193 ~~~~vl~fL~s~Gfs-~~qI~~Ii~r~P~lL~~~~e~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~e~~L~p~v~f 271 (506)
-++.||+.|...|+= +...+..+-+. .+....-......+-|...|++...|...+...+ .+..+......
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~--~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~------~~de~e~a~~l 122 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRT--MMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYT------DKLQVEKGVTL 122 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHH--HHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTSC------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHcccccHHHHHHHHHHcCCCHHHHHHHHHhCC------chhHHHHHHHH
Confidence 446778888777764 44444333221 0001112334445778889999999888886532 22223333333
Q ss_pred HHH-cCCCCccccccccccccccccccccchhhhHHHHHHhhCCChhhHHHHHhh
Q 010604 272 LIS-LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQL 325 (506)
Q Consensus 272 L~~-lGls~~~I~kll~~~P~iL~~s~e~~L~p~v~~L~~~lGv~~~~l~~lI~~ 325 (506)
++. ++- .+ ..+....-.-.+.||. .-||+.+.|..++..
T Consensus 123 ~~Kk~~~-----------~~---~~~~~~~~~K~~~~L~-rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 123 AEKLANR-----------YS---HDSYRNKQNKIKQSLL-TKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHH-----------TT---TSCHHHHHHHHHHHHH-HTTCCHHHHHHHHHH
T ss_pred HHHHHhh-----------cc---CCChHHHHHHHHHHHH-HCCCCHHHHHHHHHH
Confidence 332 111 01 0011111233567886 789999999998875
Done!