Query 010604
Match_columns 506
No_of_seqs 259 out of 1293
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 10:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010604.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010604hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 62.3 2.9 0.00021 27.5 3.0 26 374-399 3-28 (41)
2 d1vg5a_ a.5.2.1 (A:) Rhomboid 61.4 3.7 0.00027 30.3 3.9 38 376-421 30-67 (73)
3 d1wgna_ a.5.2.1 (A:) Ubiquitin 61.1 6.2 0.00045 28.2 5.0 38 376-421 20-57 (63)
4 d2g3qa1 a.5.2.1 (A:1339-1381) 58.7 5.3 0.00038 26.4 3.7 22 378-399 7-28 (43)
5 d1wiva_ a.5.2.1 (A:) Ubiquitin 58.2 6.9 0.0005 28.8 5.0 38 376-421 30-67 (73)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 54.3 10 0.00073 26.9 5.2 40 376-423 10-49 (63)
7 d1qkla_ a.143.1.2 (A:) RPB6 {H 54.3 7.4 0.00054 31.8 4.9 20 140-159 61-80 (127)
8 d1whca_ a.5.2.1 (A:) UBA/UBX 3 39.1 19 0.0014 25.5 4.6 41 377-424 11-51 (64)
9 d2crna1 a.5.2.1 (A:8-58) Suppr 35.7 31 0.0022 23.2 5.0 39 379-424 6-44 (51)
10 d2daha1 a.5.2.1 (A:8-48) Ubiqu 34.5 12 0.00087 24.4 2.5 39 375-420 2-40 (41)
11 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 28.1 41 0.003 22.6 4.6 35 378-419 15-49 (51)
12 d1rw1a_ c.47.1.12 (A:) Hypothe 26.6 32 0.0024 26.5 4.5 67 195-261 14-93 (114)
13 d1qpza1 a.35.1.5 (A:2-58) Puri 24.6 35 0.0025 23.5 3.8 46 310-360 8-53 (57)
14 d2hsga1 a.35.1.5 (A:2-58) Gluc 23.2 39 0.0028 23.2 3.7 46 310-360 9-54 (57)
15 d1veka_ a.5.2.1 (A:) Ubiquitin 22.2 75 0.0054 23.4 5.6 41 377-424 31-71 (84)
16 d1k6ya1 a.4.10.1 (A:1-46) N-te 21.0 36 0.0027 22.5 3.0 26 378-403 18-44 (46)
17 d1efaa1 a.35.1.5 (A:2-60) Lac 20.7 42 0.0031 23.2 3.5 56 302-362 2-57 (59)
18 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 20.3 30 0.0022 23.4 2.5 45 372-423 5-49 (50)
19 d1uxda_ a.35.1.5 (A:) Fructose 20.1 24 0.0017 24.5 2.1 47 310-358 8-54 (59)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.26 E-value=2.9 Score=27.51 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhc
Q 010604 374 GLLPRINFLRSIGMRNSDILKVLRSL 399 (506)
Q Consensus 374 ~L~~kvefL~~lGfs~eev~~mv~r~ 399 (506)
....+|+-|.+|||+++++..+++.+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46788899999999999999888765
No 2
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=61.42 E-value=3.7 Score=30.35 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 421 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~ 421 (506)
...|+-|..|||+++++.+.+..+ ..++..-++||...
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 668888999999999988888765 45788888888764
No 3
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.11 E-value=6.2 Score=28.22 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 421 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~ 421 (506)
...|+.|..|||+++++.+.+..+ ..++..-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 567888999999999998888765 34688888888765
No 4
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=58.68 E-value=5.3 Score=26.38 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=17.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhc
Q 010604 378 RINFLRSIGMRNSDILKVLRSL 399 (506)
Q Consensus 378 kvefL~~lGfs~eev~~mv~r~ 399 (506)
.|+-|.+|||++++..+++.++
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHc
Confidence 4566778888888888888877
No 5
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=58.24 E-value=6.9 Score=28.77 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 421 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~ 421 (506)
...|.-|.+|||+++++..+++.+ ..++..-++||...
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHHcC
Confidence 567888899999999998888876 34688888888764
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.32 E-value=10 Score=26.94 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 376 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 376 ~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
...|+-|..|||+++.+.+.+..+ ...+..-++||...+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~~~~ 49 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCCC
Confidence 456778889999999988887765 2468888899988654
No 7
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.26 E-value=7.4 Score=31.82 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=9.5
Q ss_pred hhhhhhhccccccccCCCcc
Q 010604 140 EQLDIRNRRNTIKNSFDDTY 159 (506)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~f 159 (506)
++..+.+.|-.-...-...|
T Consensus 61 E~arilG~Ra~Qi~~ga~~~ 80 (127)
T d1qkla_ 61 ERARVLGTRALQIAMCAPVM 80 (127)
T ss_dssp HHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHhcCCCce
Confidence 44445555554444433444
No 8
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.12 E-value=19 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 010604 377 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 424 (506)
Q Consensus 377 ~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~ 424 (506)
..++-|.+|||+++...+.+... .+ ..+..-++||...+.-
T Consensus 11 ~~l~~L~~MGF~~~~a~~AL~~t-----~n--~~~e~A~~Wl~~h~~d 51 (64)
T d1whca_ 11 TALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh-----CC--CCHHHHHHHHHHCCCC
Confidence 35667788999999888777643 11 2588889999887753
No 9
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.66 E-value=31 Score=23.23 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 010604 379 INFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 424 (506)
Q Consensus 379 vefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~ 424 (506)
++-|.+|||++....+.+... .+ ..+..-+++|...+.-
T Consensus 6 v~~L~~MGF~~~~a~~Al~~t-----~n--~~ve~A~~Wl~~h~~d 44 (51)
T d2crna1 6 LEPLLAMGFPVHTALKALAAT-----GR--KTAEEALAWLHDHCND 44 (51)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHSSS
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----CC--CCHHHHHHHHHHcCCC
Confidence 456778999998887776532 12 3588888888887643
No 10
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.49 E-value=12 Score=24.42 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHH
Q 010604 375 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 420 (506)
Q Consensus 375 L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~ 420 (506)
+...++.|+.|||+.++.. =.+|..+ ...|..-+++|..
T Consensus 2 y~~QL~~L~~MGF~d~~~N------i~AL~~t-~Gdv~~Aie~Ll~ 40 (41)
T d2daha1 2 FQVQLEQLRSMGFLNREAN------LQALIAT-GGDVDAAVEKLRQ 40 (41)
T ss_dssp SHHHHHHHHHHTCCCHHHH------HHHHHHH-TSCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCHHHH------HHHHHHc-CCCHHHHHHHHHh
Confidence 4567889999999988743 2233333 3567777777653
No 11
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.08 E-value=41 Score=22.61 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=22.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHH
Q 010604 378 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLI 419 (506)
Q Consensus 378 kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv 419 (506)
.++.|.+|||+++...+.+... . -..++.-++||.
T Consensus 15 ~l~~L~~MGF~~~~a~~AL~~t------~-n~~ve~A~~WLl 49 (51)
T d2cpwa1 15 ALDVLLSMGFPRARAQKALAST------G-GRSVQTACDWLF 49 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHT------T-TSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH------C-CCCHHHHHHHHH
Confidence 4667778888888777766532 1 124666666664
No 12
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.61 E-value=32 Score=26.52 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHhCC------------CChHHHHHHHhhcCcccccccc-CHHHHHHHHHHCCCChHhHHHHHhhCCcccccCc
Q 010604 195 LPLLDYLSTFG------------LKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTV 261 (506)
Q Consensus 195 ~~vl~fL~s~G------------fs~~qI~~Ii~r~P~lL~~~~e-~l~~kL~fL~slGvs~~~l~~iv~~~P~IL~~s~ 261 (506)
+.++++|...| ++..++..++...+.--..+.. .....+.......++.+++..++..+|.++.+.+
T Consensus 14 rka~~~L~~~~i~~~~idy~k~pls~~eL~~ll~~~g~~~l~~~r~~~~k~l~~~~~~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 14 KKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHHHHHHCGGGBCSCE
T ss_pred HHHHHHHHHcCCCeEEEEccccCCCHHHHHHHHHhcchHHHhhhhhHHHHHhhhhhhccccHHHHHHHHHhCcceEeCCE
No 13
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.64 E-value=35 Score=23.51 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=27.9
Q ss_pred HhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhh
Q 010604 310 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMV 360 (506)
Q Consensus 310 ~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml 360 (506)
+..|++...|.++|...|.+ +. ..+.+|....++||+.++.+..-|
T Consensus 8 ~~agVS~sTVSr~ln~~~~v---s~--~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 8 KRANVSTTTVSHVINKTRFV---AE--ETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHHTSCHHHHHHHHHTCSCC---CH--HHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHCcCHHHHHHHHCCCCcc---CH--HHHHHHHHHHHHHCCCCCHHHHHH
Confidence 35678888888887766532 21 234455555567777777665444
No 14
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=23.19 E-value=39 Score=23.24 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=26.8
Q ss_pred HhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhh
Q 010604 310 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMV 360 (506)
Q Consensus 310 ~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml 360 (506)
+..|++...+.++|...|.+ +. ..+.++....++||+.++...+.+
T Consensus 9 ~~agvS~~TVSr~Ln~~~~V---s~--~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 9 REASVSMATVSRVVNGNPNV---KP--STRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHTTSCHHHHHHHHTTCTTS---CH--HHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHCcCHHHHHHHhCCCCcC---CH--HHHHHHHHHHHHHCcCCCHHHHHh
Confidence 35677777777777766542 22 133444444467777766655444
No 15
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.18 E-value=75 Score=23.42 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 010604 377 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 424 (506)
Q Consensus 377 ~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg~ 424 (506)
..|.-|..|||++....+++... .+ ..+..-++||..+++-
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t-----~n--~~~e~A~~Wl~~h~~d 71 (84)
T d1veka_ 31 EIVAQLVSMGFSQLHCQKAAINT-----SN--AGVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT-----TT--CCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH-----cC--CCHHHHHHHHHHcCCC
Confidence 46778889999999888766532 22 3689999999988764
No 16
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=20.98 E-value=36 Score=22.53 Aligned_cols=26 Identities=4% Similarity=0.014 Sum_probs=19.2
Q ss_pred HHHHHH-HhcCChHHHHHHHHhccchh
Q 010604 378 RINFLR-SIGMRNSDILKVLRSLTQVL 403 (506)
Q Consensus 378 kvefL~-~lGfs~eev~~mv~r~P~iL 403 (506)
....|. .+|++......+|..||.|-
T Consensus 18 n~~~L~~~F~ip~~vAr~IV~~C~~Cq 44 (46)
T d1k6ya1 18 NWRAMASDFNLPPVVAKEIVASCDKCQ 44 (46)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 345564 67888888888888888763
No 17
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.67 E-value=42 Score=23.22 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHHhhhc
Q 010604 302 KPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTK 362 (506)
Q Consensus 302 ~p~v~~L~~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ml~k 362 (506)
++.+.=+.+..|++...+.++|...+. +......+|....+++|+.++.+...|+.
T Consensus 2 ~~Ti~diA~~agvS~sTVSr~l~~~~~-----vs~~tr~rI~~~a~~lgY~pn~~Ar~L~~ 57 (59)
T d1efaa1 2 PVTLYDVAEYAGVSYQTVSRVVNQASH-----VSAKTREKVEAAMAELNYIPNRVAQQLAG 57 (59)
T ss_dssp CCCHHHHHHTTTSCHHHHHHHHTTCSS-----CCTHHHHHHHHHHHHHTCCCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCc-----CCHHHHHHHHHHHHHHCCCcCHHHHHHhc
No 18
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.26 E-value=30 Score=23.37 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhC
Q 010604 372 DDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 423 (506)
Q Consensus 372 e~~L~~kvefL~~lGfs~eev~~mv~r~P~iL~~Sle~~Lk~K~efLv~~mg 423 (506)
+..+..-++-|+.|||+..+.. =+.|..+ ...+..-+++|.+.-|
T Consensus 5 e~ry~~QL~qL~~MGF~d~~~N------i~AL~~t-~GdV~~Aie~Ll~~~g 49 (50)
T d2dnaa1 5 EVRFSKEMECLQAMGFVNYNAN------LQALIAT-DGDTNAAIYKLKSSQG 49 (50)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHH------HHHHHHT-TSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCCHHHH------HHHHHHc-CCCHHHHHHHHHhcCC
Confidence 5567788899999999887643 2234444 4678888888876433
No 19
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.13 E-value=24 Score=24.53 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=29.3
Q ss_pred HhhCCChhhHHHHHhhCcceeeeccccccchhhhhhhhhcCCChhhHHH
Q 010604 310 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVK 358 (506)
Q Consensus 310 ~~lGv~~~~l~~lI~~~P~iL~~s~e~~l~~kv~fL~k~LG~s~~ev~~ 358 (506)
+..|++...+.++|...|.-...+.+ .+.++....+++|+.++....
T Consensus 8 ~~agvS~sTVSrvLn~~~~~~~vs~~--tr~rV~~~a~~lgY~pn~~Ar 54 (59)
T d1uxda_ 8 RLAGVSRTTASYVINGKAKQYRVSDK--TVEKVMAVVREHNYHPNAVAA 54 (59)
T ss_dssp HHHTSCTTHHHHHHHTCGGGTTCTTT--THHHHHHHHHHHTCCCCSCCS
T ss_pred HHHCcCHHHHHHHHcCCCCcCcCCHH--HHHHHHHHHHHHCCCcCHHHH
Confidence 46788888888888877653222322 344555555778887766543
Done!