BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010607
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 148/302 (49%), Gaps = 26/302 (8%)
Query: 78 TLQKWLSDSGLPPQKMAIQKVDVGER-GLVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136
T KWL + G+ K ++ V E GLVALK+I + + +L VP L I D+
Sbjct: 8 TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDA----VA 63
Query: 137 AGEVLKQCS-VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLE 195
A E+ + CS + W + +LI E S E S W +Y LP++ S +YW+ EL L+
Sbjct: 64 ASEIGRVCSELKPWLSVILFLIRERSREDSV-WKHYFGILPQETDSTIYWSEEELQE-LQ 121
Query: 196 ASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSR-LVRLP 254
SQ+ + + V L I LFP+ V ++ F W+FGIL SR RL
Sbjct: 122 GSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAFSRLR 180
Query: 255 SMDGRVALVPWADMLNHSCEVETF-LDYDKSSQGVVFTTDRQY--------QPGEQVFIS 305
+ + + +VP AD++NHS V T Y+ +F+ D + + GEQV+I
Sbjct: 181 NEN--LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 238
Query: 306 YG-KKSNGELLLSYGFV-PREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECF 363
Y KSN EL L YGF+ P E + + L L + +SD + +KL+ G + + F
Sbjct: 239 YDLNKSNAELALDYGFIEPNENRH---AYTLTLEISESDPFFDDKLDVAESNGFAQTAYF 295
Query: 364 PI 365
I
Sbjct: 296 DI 297
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 148/304 (48%), Gaps = 26/304 (8%)
Query: 76 ASTLQKWLSDSGLPPQKMAIQKVDVGER-GLVALKNIRKGEKLLFVPPSLVITADSKWSC 134
T KWL + G+ K ++ V E GLVALK+I + + +L VP L I D+
Sbjct: 10 VQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDA---- 65
Query: 135 PEAGEVLKQCS-VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRY 193
A E+ + CS + W + +LI E S E S W +Y LP++ S +YW+ EL
Sbjct: 66 VAASEIGRVCSELKPWLSVILFLIRERSREDSV-WKHYFGILPQETDSTIYWSEEELQE- 123
Query: 194 LEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSR-LVR 252
L+ SQ+ + + V L I LFP+ V ++ F W+FGIL SR R
Sbjct: 124 LQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAFSR 182
Query: 253 LPSMDGRVALVPWADMLNHSCEVETF-LDYDKSSQGVVFTTDRQY--------QPGEQVF 303
L + + + +VP AD++NHS V T Y+ +F+ D + + GEQV+
Sbjct: 183 LRNEN--LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVY 240
Query: 304 ISYG-KKSNGELLLSYGFV-PREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASE 361
I Y KSN EL L YGF+ P E + + L L + +SD + +KL+ G + +
Sbjct: 241 IQYDLNKSNAELALDYGFIEPNENRH---AYTLTLEISESDPFFDDKLDVAESNGFAQTA 297
Query: 362 CFPI 365
F I
Sbjct: 298 YFDI 301
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 146/319 (45%), Gaps = 28/319 (8%)
Query: 79 LQKWLSDSGLPPQKMAIQKVDVGERG--LVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136
L KW S++G + + V+ E G L A ++I+ E L+VP L+ T +S
Sbjct: 81 LXKWASENGASVE--GFEXVNFKEEGFGLRATRDIKAEELFLWVPRKLLXTVESA----- 133
Query: 137 AGEVLKQCSVPDWPL-------LATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAE 189
VL D L LA +L+ E + +S W YI LP + + LY+ E
Sbjct: 134 KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSEYDTPLYFEEDE 192
Query: 190 LDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPD---LFPEEVFNMETFKWSFGIL 246
+ RYL+++Q + N Y ++ +P L ++ F E ++W+ +
Sbjct: 193 V-RYLQSTQAIHDVFSQYKNTARQYAYF-YKVIQTHPHANKLPLKDSFTYEDYRWAVSSV 250
Query: 247 FSRLVRLPSMDGR---VALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVF 303
+R ++P+ DG +AL+P D NH+ + T Y+ + ++ GEQ++
Sbjct: 251 XTRQNQIPTEDGSRVTLALIPLWDXCNHTNGLIT-TGYNLEDDRCECVALQDFRAGEQIY 309
Query: 304 ISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECF 363
I YG +SN E ++ GF N D V++ L + KSD+ Y K E L + G+ S F
Sbjct: 310 IFYGTRSNAEFVIHSGFFF--DNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVF 367
Query: 364 PIQITGWPLELMAYAYLVV 382
+ T P+ A+L V
Sbjct: 368 ALHFTEPPISAQLLAFLRV 386
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 27/283 (9%)
Query: 88 LPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAG----EVLKQ 143
L P+ ++ V G+VA ++++ GE L VP + ++ S+ +C G E +
Sbjct: 36 LSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALL---SQHTCSIGGLLERERVAL 92
Query: 144 CSVPDWPLLATYLISEASFEKSSRWSNYISALPR--QPYSLLYWTRAELDRYLEASQIRE 201
S W + + +SRW Y + P + ++W E L+ + + E
Sbjct: 93 QSQSGW-VPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPE 151
Query: 202 RAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFK--------WSFGILFSRLVRL 253
+ + N+ Y + L +PDLF V ++E + +SF
Sbjct: 152 AVEKDLANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEEEEDE 211
Query: 254 PSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQP---GEQVFISYGKKS 310
+ V +VP AD+LNH L+Y + +V T QP G ++F +YG+ +
Sbjct: 212 KEPNSPV-MVPAADILNHLANHNANLEYSANCLRMVAT-----QPIPKGHEIFNTYGQMA 265
Query: 311 NGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALR 353
N +L+ YGFV N D+ ++ + + K EA R
Sbjct: 266 NWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAER 308
>pdb|3KK7|A Chain A, Crystal Structure Of Putative Cell Invasion Protein With
MacPERFORIN Domain (Np_812351.1) From Bacteriodes
Thetaiotaomicron Vpi-5482 At 2.46 A Resolution
pdb|3KK7|B Chain B, Crystal Structure Of Putative Cell Invasion Protein With
MacPERFORIN Domain (Np_812351.1) From Bacteriodes
Thetaiotaomicron Vpi-5482 At 2.46 A Resolution
Length = 541
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 28/162 (17%)
Query: 92 KMAIQKVDVGER--GLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDW 149
K I+K + GE+ +V + N R+G+KL+F P + ++ E LK S+P
Sbjct: 381 KXYIRKSNSGEKLYDIVPVLNTRQGDKLIFSNPD---------AASQSDEELKANSIP-- 429
Query: 150 PLLATYLISEASF--EKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERI 207
AT+L + EKS + I A P + + + T + + + E+ +
Sbjct: 430 ---ATFLTKSNAIKDEKSKYYQLKIKADPNKTINPIIQTTLS----FQINNVDEKGXYKF 482
Query: 208 ----TNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGI 245
TN+ YN F+ Y D + + + + W GI
Sbjct: 483 KNANTNIWYIYNPTSXYCFAYYDDDYIPDAYGI--LDWVNGI 522
>pdb|2BBD|A Chain A, Crystal Structure Of The Stiv Mcp
pdb|2BBD|B Chain B, Crystal Structure Of The Stiv Mcp
pdb|2BBD|C Chain C, Crystal Structure Of The Stiv Mcp
pdb|2BBD|D Chain D, Crystal Structure Of The Stiv Mcp
Length = 350
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 299 GEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCY 345
G I + K NG+L L++ PSDS+E L+L+ D Y
Sbjct: 268 GASAIIDFRKYFNGDLDLTHA--------PSDSIEYDLALQNQDNVY 306
>pdb|3DX9|B Chain B, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DX9|D Chain D, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DXA|E Chain E, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|J Chain J, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|O Chain O, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
Length = 244
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 150 PLLATYLISEASFEKSSRWSNYISA-LPRQPYSLLYWTRAELDR---YLEASQIRERAIE 205
P TY +EA EKS S+ SA P+ +S L R E YL AS+ R+ +
Sbjct: 42 PEFLTYFQNEAQLEKSRLLSDRFSAERPKGSFSTLEIQRTEQGDSAMYLCASRYRDDSYN 101
Query: 206 RITNVIGTYNDLRLRIFSKYPDLFPEEV 233
GT RL + ++FP EV
Sbjct: 102 EQFFGPGT----RLTVLEDLKNVFPPEV 125
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 107 ALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSS 166
AL+N+ GE+ + LV A + + PE +VL + + P + T S
Sbjct: 300 ALENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTN--SGGVLVSYY 357
Query: 167 RWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYN 215
W Q YWT AE++ EA + +AI+ + V YN
Sbjct: 358 EWV--------QNQYGYYWTEAEVEEKQEADMM--KAIKGVFAVADEYN 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,202,732
Number of Sequences: 62578
Number of extensions: 565170
Number of successful extensions: 1518
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1500
Number of HSP's gapped (non-prelim): 8
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)