Query 010607
Match_columns 506
No_of_seqs 314 out of 1393
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 3.7E-36 8E-41 322.3 24.4 406 74-502 47-468 (472)
2 KOG1338 Uncharacterized conser 100.0 2.4E-32 5.2E-37 271.1 20.4 273 75-356 8-313 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 2E-18 4.4E-23 152.7 9.4 127 338-473 1-128 (128)
4 PF00856 SET: SET domain; Int 99.7 2.3E-17 5E-22 149.3 9.5 69 238-307 92-162 (162)
5 smart00317 SET SET (Su(var)3-9 98.8 6.3E-09 1.4E-13 89.3 5.9 46 261-306 69-116 (116)
6 KOG2589 Histone tail methylase 95.4 0.014 3.1E-07 59.2 3.8 47 260-308 192-238 (453)
7 KOG1085 Predicted methyltransf 94.1 0.045 9.7E-07 53.9 3.5 48 267-315 335-385 (392)
8 KOG4442 Clathrin coat binding 90.9 0.2 4.4E-06 55.1 3.5 42 266-307 194-237 (729)
9 KOG1079 Transcriptional repres 88.9 0.37 8E-06 52.8 3.5 42 266-307 666-709 (739)
10 KOG1080 Histone H3 (Lys4) meth 88.3 0.38 8.3E-06 56.0 3.4 43 265-307 939-983 (1005)
11 COG2940 Proteins containing SE 85.0 0.49 1.1E-05 51.4 2.0 41 268-308 408-450 (480)
12 KOG1083 Putative transcription 65.5 5.3 0.00012 46.3 3.2 42 268-309 1253-1296(1306)
13 KOG1082 Histone H3 (Lys9) meth 65.4 4.4 9.6E-05 42.4 2.5 44 268-311 275-324 (364)
14 KOG1338 Uncharacterized conser 60.6 18 0.00039 37.9 5.7 73 259-334 269-343 (466)
15 KOG1085 Predicted methyltransf 60.2 9.6 0.00021 38.0 3.6 35 91-125 256-290 (392)
16 KOG2084 Predicted histone tail 41.1 36 0.00078 36.2 4.7 60 259-320 199-265 (482)
17 KOG1141 Predicted histone meth 40.3 16 0.00035 41.5 1.8 52 268-319 1192-1253(1262)
18 TIGR02059 swm_rep_I cyanobacte 30.4 71 0.0015 27.0 3.7 31 280-310 69-99 (101)
19 KOG2461 Transcription factor B 29.0 46 0.001 35.3 2.9 35 285-319 121-155 (396)
20 COG1188 Ribosome-associated he 28.3 41 0.0009 28.4 2.0 54 233-308 8-61 (100)
21 smart00317 SET SET (Su(var)3-9 28.2 67 0.0015 26.4 3.4 32 86-118 79-113 (116)
22 PF10281 Ish1: Putative stress 25.7 69 0.0015 21.7 2.4 16 76-91 6-21 (38)
23 KOG4442 Clathrin coat binding 25.5 62 0.0014 36.4 3.2 28 92-119 121-148 (729)
24 PF08666 SAF: SAF domain; Int 22.2 53 0.0011 24.4 1.4 15 103-117 2-16 (63)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=322.31 Aligned_cols=406 Identities=33% Similarity=0.483 Sum_probs=297.8
Q ss_pred hcHHHHHHHHHhCCCCCCCcEEEeeCCCcceEEEcccCCCCCEEEEcCCCCccccccccCCchhhhhhccCCCCChHHHH
Q 010607 74 ENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLA 153 (506)
Q Consensus 74 ~~~~~l~~Wl~~~G~~~~~v~i~~~~~~GrGlvA~~~I~~ge~ll~IP~~l~it~~~~~~~~~~~~~l~~~~l~~~~~La 153 (506)
++...+.-|.+..|....+..+......++++.+..++..++.+..+|....+.......... . ...++
T Consensus 47 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~l~ 115 (472)
T KOG1337|consen 47 ENIKSLKFWLTGNGLSSSKSSLPGNDIDEWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYNDL---------L--PIALA 115 (472)
T ss_pred cccccceeccccCCcchhhhccccccccccchhhhhhhhhhhhhccCCchhhhccccccCccc---------c--HHHHH
Confidence 345566677777777653333222234456666666666676666666666555544322110 1 16799
Q ss_pred HHHHHhhhcCCCCCcHHHHHhcCCCCCCccccCHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC---
Q 010607 154 TYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFP--- 230 (506)
Q Consensus 154 l~Ll~E~~~g~~S~W~pYl~~LP~~~~~pl~w~~~el~~lL~gs~l~~~~~~~~~~~~~~y~~l~~~l~~~~p~~f~--- 230 (506)
+++++|...+..|.|.+|+..||.++++|++|..+++. .|.+++....+..+...++..|..+.. +...+|..++
T Consensus 116 ~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 193 (472)
T KOG1337|consen 116 LFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVK-SLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPSLFGSDL 193 (472)
T ss_pred HHHHHhhhccccccchhhhhhchhhcCCccccCHHHHH-HhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhccccccccc
Confidence 99999998888899999999999999999999999998 589999888887777666665555543 4455555443
Q ss_pred chhccHHHHHHHHhhhhccceecCCC--------CCceEeeeecccCCCCCCCcceEEeeCCCCeEEEEeccccCCCCee
Q 010607 231 EEVFNMETFKWSFGILFSRLVRLPSM--------DGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQV 302 (506)
Q Consensus 231 ~~~~t~~~f~WA~s~V~SRaf~~~~~--------~~~~~LVP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~GeEV 302 (506)
.+.++++.|.||+++|.||+|+.+.. ....+|+|++||+||+++. ....|+..++.+.+++.++|++||||
T Consensus 194 ~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~~~l~~~~~v~~geev 272 (472)
T KOG1337|consen 194 FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEAVELVAERDVSAGEEV 272 (472)
T ss_pred cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCcEEEEEeeeecCCCeE
Confidence 23489999999999999999987653 2367999999999999988 45567766779999999999999999
Q ss_pred ecccCCCChHHHHHhcCcccCCCCCCCCeEEEecccCCCcccHHHHHHHHHHCCCCCcceeeeecCCCcH-HHHHHHHHH
Q 010607 303 FISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPL-ELMAYAYLV 381 (506)
Q Consensus 303 fisYG~~sN~eLL~~YGFv~~~~~Np~D~v~l~l~l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~~~p~-~Ll~~lRl~ 381 (506)
||+||+++|++||++||||.+ +||+|.|.|.+.+...|..+..+...+..+++.....|.+...+.|. +++...+++
T Consensus 273 fi~YG~~~N~eLL~~YGFv~~--~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (472)
T KOG1337|consen 273 FINYGPKSNAELLLHYGFVEE--DNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEMLLLFLLL 350 (472)
T ss_pred EEecCCCchHHHHHhcCCCCC--CCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhhhhhhhh
Confidence 999999999999999999988 99999999999999999999999999999999998999888777653 333333333
Q ss_pred cCCcchh--hhHHHHHHHHhccc-cccCCCCCchHHHHHHHHHHHH-HHHHHHhhhhhHhhcCCCCCCCCChhhhhhHHH
Q 010607 382 VSPPSMK--GKFEEMAAAASNKM-TSKKDIKCPEIDEQALQFILDS-CESSISKYSRFLQASGSMDLDTTSPKQLNRRVF 457 (506)
Q Consensus 382 ~~~~~~~--~~~~~l~~~~~~~~-~~~~~~~~~~~E~~~l~~L~~~-~~~~L~~y~Ttleed~~~l~d~~~~~~~~~~~~ 457 (506)
.+..+.. ..+........... +......+.++|...+..+.+. |...+..+.++++++...+.+.- ++ .
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~----l~---~ 423 (472)
T KOG1337|consen 351 DALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNI----LS---K 423 (472)
T ss_pred ccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcccc----cc---h
Confidence 3332221 11111110001111 1122233478999999999999 88899999999977766665321 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhhh
Q 010607 458 LKQLAVDLCTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFV 502 (506)
Q Consensus 458 ~~rlA~~~R~~EKrIL~~~~~~l~~rl~~l~~~~~~~~~~~~~~~ 502 (506)
+..++..++..+||||.+.+..++.+...+++..---......++
T Consensus 424 ~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~s~~~~~~~~~~~~~ 468 (472)
T KOG1337|consen 424 LLELLEKLRTLEKRILEKSLKLLRSRLKLLHSLEYNQARLLQSLK 468 (472)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhcccccccchhhhhhhh
Confidence 367899999999999999999999999999887744333333333
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=271.07 Aligned_cols=273 Identities=22% Similarity=0.335 Sum_probs=214.2
Q ss_pred cHHHHHHHHHhCC-CCC-CCcEEEeeC----CCcceEEEcccCCCCCEEEEcCCCCccccccccC---Cchhhh-hhccC
Q 010607 75 NASTLQKWLSDSG-LPP-QKMAIQKVD----VGERGLVALKNIRKGEKLLFVPPSLVITADSKWS---CPEAGE-VLKQC 144 (506)
Q Consensus 75 ~~~~l~~Wl~~~G-~~~-~~v~i~~~~----~~GrGlvA~~~I~~ge~ll~IP~~l~it~~~~~~---~~~~~~-~l~~~ 144 (506)
-++.|+.|++..+ ... +++.+.+.+ ..|+|++|+++|++||.|+.+|++.+++..+... -|+..+ ++ +
T Consensus 8 ~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~L--n 85 (466)
T KOG1338|consen 8 LAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLL--N 85 (466)
T ss_pred HHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHh--h
Confidence 3789999999987 544 677776543 3599999999999999999999999999876421 122222 23 4
Q ss_pred CCCChHHHHHHHHHhhhcCCCCCcHHHHHhcCCC--CCCccccCHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010607 145 SVPDWPLLATYLISEASFEKSSRWSNYISALPRQ--PYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIF 222 (506)
Q Consensus 145 ~l~~~~~Lal~Ll~E~~~g~~S~W~pYl~~LP~~--~~~pl~w~~~el~~lL~gs~l~~~~~~~~~~~~~~y~~l~~~l~ 222 (506)
+.+.|..|++.|++|...+..|+|+||++.+|+. .++|+||+++|++.+++|+-+.+ ..+..+++.++|....+++.
T Consensus 86 e~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee-~~Kd~aeI~~~~i~~i~pf~ 164 (466)
T KOG1338|consen 86 EVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEE-TVKDKAEIEKDFIFVIQPFK 164 (466)
T ss_pred cCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchh-hHhHHHHHHHHHHHHHHHHH
Confidence 6889999999999999877779999999999985 47899999999997677765554 77888999999999999999
Q ss_pred hhCCCCCCchhccHHHHHHHHhhhhccceecCCC-------------CCceEeeeecccCCCCCC-CcceEEeeCCCCeE
Q 010607 223 SKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSM-------------DGRVALVPWADMLNHSCE-VETFLDYDKSSQGV 288 (506)
Q Consensus 223 ~~~p~~f~~~~~t~~~f~WA~s~V~SRaf~~~~~-------------~~~~~LVP~~Dm~NH~~~-~~~~~~~d~~~~~~ 288 (506)
+.+|.+|.. +++++|..+++++.+.+|.++-. -...+|+|.+||+||+.. .|+...| +++|+
T Consensus 165 ~~~p~vfs~--~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y--~~NcL 240 (466)
T KOG1338|consen 165 QHCPIVFSR--PSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRY--EDNCL 240 (466)
T ss_pred HhCcchhcc--cCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceec--cCcce
Confidence 999999864 89999999999999999987532 013699999999999987 7888888 57999
Q ss_pred EEEeccccCCCCeeecccCCCChHHHHHhcCcccCCCCC-------CCCeEEEecccCCCcccHHHHHHHHHHCC
Q 010607 289 VFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTN-------PSDSVELPLSLKKSDKCYKEKLEALRKYG 356 (506)
Q Consensus 289 ~l~a~r~i~~GeEVfisYG~~sN~eLL~~YGFv~~~~~N-------p~D~v~l~l~l~~~d~~~~~k~~~L~~~g 356 (506)
.|+|+|+|.+|+||+++||.++|. |++||.+.-.+.. -++.+.+-.+.+.+++.+..|.-.+..+|
T Consensus 241 ~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~n 313 (466)
T KOG1338|consen 241 EMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLHN 313 (466)
T ss_pred eeeecCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhcc
Confidence 999999999999999999999998 7777776431100 01223333455556666666654333333
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.76 E-value=2e-18 Score=152.66 Aligned_cols=127 Identities=26% Similarity=0.420 Sum_probs=100.5
Q ss_pred cCCCcccHHHHHHHHHHCCCCCcceeeeecCCC-cHHHHHHHHHHcCCcchhhhHHHHHHHHhccccccCCCCCchHHHH
Q 010607 338 LKKSDKCYKEKLEALRKYGLSASECFPIQITGW-PLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQ 416 (506)
Q Consensus 338 l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~~~-p~~Ll~~lRl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~~ 416 (506)
++++||+++.|.++|+.+|+.....|.++.++. |.+|++++|+++++++++..+......... .....+.+.+||.+
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~--~~~~~~ls~~nE~~ 78 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGPLPPELLAALRVLLMTEEELRALKSLADSSEW--SDRSEPLSPENEIA 78 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSSSHHHHHHHHHHHHSCHHHHHHHHHCGTTTHC--CHCCC-SBHHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCCCCHHHHHHHHHHHcChHHHHHHHHhhccccc--ccccCCCchhhHHH
Confidence 467899999999999999999888899999886 999999999999999988766543211111 11234567899999
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhcCCCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 010607 417 ALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRIL 473 (506)
Q Consensus 417 ~l~~L~~~~~~~L~~y~Ttleed~~~l~d~~~~~~~~~~~~~~rlA~~~R~~EKrIL 473 (506)
++++|.+.|..+|++|+||+++|++++.+... .. ++++|++||++||+||
T Consensus 79 ~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~----~~---~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 79 ALQFLIDLCEARLSAYPTTLEEDEELLQSNDL----SS---RRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCC----HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCC----cH---HHHHHHHHHHHhHhcC
Confidence 99999999999999999999999998865332 11 2789999999999998
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.71 E-value=2.3e-17 Score=149.31 Aligned_cols=69 Identities=35% Similarity=0.612 Sum_probs=51.4
Q ss_pred HHHHHHhhhhccceecCCCCCceEeeeecccCCCCCCCcceEEee--CCCCeEEEEeccccCCCCeeecccC
Q 010607 238 TFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYD--KSSQGVVFTTDRQYQPGEQVFISYG 307 (506)
Q Consensus 238 ~f~WA~s~V~SRaf~~~~~~~~~~LVP~~Dm~NH~~~~~~~~~~d--~~~~~~~l~a~r~i~~GeEVfisYG 307 (506)
...|....+..+...... ....+|+|++||+||++.+|+.+.++ ..+++++++|.|+|++||||||+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 92 FISWTRSDFSSRSFSEDD-RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp HHHHHHHEEEEEEETTEE-EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred hccccceeeecccccccc-ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 334444444444432221 12589999999999999999988886 5789999999999999999999998
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.81 E-value=6.3e-09 Score=89.28 Aligned_cols=46 Identities=30% Similarity=0.440 Sum_probs=40.5
Q ss_pred EeeeecccCCCCCCCcceEEeeCCCC--eEEEEeccccCCCCeeeccc
Q 010607 261 ALVPWADMLNHSCEVETFLDYDKSSQ--GVVFTTDRQYQPGEQVFISY 306 (506)
Q Consensus 261 ~LVP~~Dm~NH~~~~~~~~~~d~~~~--~~~l~a~r~i~~GeEVfisY 306 (506)
.+.|+++++||++.+|+.+.+...++ .+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 48999999999999999877654444 59999999999999999999
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=95.41 E-value=0.014 Score=59.17 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=37.8
Q ss_pred eEeeeecccCCCCCCCcceEEeeCCCCeEEEEeccccCCCCeeecccCC
Q 010607 260 VALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGK 308 (506)
Q Consensus 260 ~~LVP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~GeEVfisYG~ 308 (506)
.-|=|.+ ++||++.+||.+.- .+.+...+++.|||++||||+--||.
T Consensus 192 LwLGPaa-fINHDCrpnCkFvs-~g~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 192 LWLGPAA-FINHDCRPNCKFVS-TGRDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred heeccHH-hhcCCCCCCceeec-CCCceeeeehhhcCCCCceeEEeecc
Confidence 4555654 89999999985422 23478899999999999999999997
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=94.13 E-value=0.045 Score=53.93 Aligned_cols=48 Identities=23% Similarity=0.480 Sum_probs=38.7
Q ss_pred ccCCCCCCCcce---EEeeCCCCeEEEEeccccCCCCeeecccCCCChHHHH
Q 010607 267 DMLNHSCEVETF---LDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELL 315 (506)
Q Consensus 267 Dm~NH~~~~~~~---~~~d~~~~~~~l~a~r~i~~GeEVfisYG~~sN~eLL 315 (506)
-++||+...|+. +..| ....++++|.++|.+|||++..||++|-+-++
T Consensus 335 RLINHS~~gNl~TKvv~Id-g~pHLiLvA~rdIa~GEELlYDYGDRSkesi~ 385 (392)
T KOG1085|consen 335 RLINHSVRGNLKTKVVEID-GSPHLILVARRDIAQGEELLYDYGDRSKESIA 385 (392)
T ss_pred hhhcccccCcceeeEEEec-CCceEEEEeccccccchhhhhhccccchhHHh
Confidence 378999877764 3344 56788999999999999999999998876654
No 8
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=0.2 Score=55.07 Aligned_cols=42 Identities=24% Similarity=0.496 Sum_probs=32.1
Q ss_pred cccCCCCCCCcceEE-eeC-CCCeEEEEeccccCCCCeeecccC
Q 010607 266 ADMLNHSCEVETFLD-YDK-SSQGVVFTTDRQYQPGEQVFISYG 307 (506)
Q Consensus 266 ~Dm~NH~~~~~~~~~-~d~-~~~~~~l~a~r~i~~GeEVfisYG 307 (506)
+=++||++.+||.+. |.. +.-.+-+-+.+.|++||||+..|+
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecc
Confidence 347899999998642 221 344556779999999999999987
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=88.86 E-value=0.37 Score=52.84 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=34.1
Q ss_pred cccCCCCCCCcceEE--eeCCCCeEEEEeccccCCCCeeecccC
Q 010607 266 ADMLNHSCEVETFLD--YDKSSQGVVFTTDRQYQPGEQVFISYG 307 (506)
Q Consensus 266 ~Dm~NH~~~~~~~~~--~d~~~~~~~l~a~r~i~~GeEVfisYG 307 (506)
+-++||+..+||+.. +-.....+-+.|.|.|.+|||+|..|+
T Consensus 666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 447999999998643 233566788999999999999999986
No 10
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=88.27 E-value=0.38 Score=56.02 Aligned_cols=43 Identities=23% Similarity=0.476 Sum_probs=34.7
Q ss_pred ecccCCCCCCCcceEEe--eCCCCeEEEEeccccCCCCeeecccC
Q 010607 265 WADMLNHSCEVETFLDY--DKSSQGVVFTTDRQYQPGEQVFISYG 307 (506)
Q Consensus 265 ~~Dm~NH~~~~~~~~~~--d~~~~~~~l~a~r~i~~GeEVfisYG 307 (506)
++=++||++.+||+... -.+...+++.|.|+|.+||||+.+|-
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 45589999999996432 12456899999999999999999985
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=85.04 E-value=0.49 Score=51.40 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=34.0
Q ss_pred cCCCCCCCcceEEeeCCCC--eEEEEeccccCCCCeeecccCC
Q 010607 268 MLNHSCEVETFLDYDKSSQ--GVVFTTDRQYQPGEQVFISYGK 308 (506)
Q Consensus 268 m~NH~~~~~~~~~~d~~~~--~~~l~a~r~i~~GeEVfisYG~ 308 (506)
++||++.+|+........+ .+.+.+.++|++||||.++||.
T Consensus 408 ~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 408 FINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred eeecCCCCCcceecccccccceeeecccccchhhhhhcccccc
Confidence 8999999998776554444 6678899999999999999985
No 12
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=65.53 E-value=5.3 Score=46.34 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=31.3
Q ss_pred cCCCCCCCcceE-EeeCC-CCeEEEEeccccCCCCeeecccCCC
Q 010607 268 MLNHSCEVETFL-DYDKS-SQGVVFTTDRQYQPGEQVFISYGKK 309 (506)
Q Consensus 268 m~NH~~~~~~~~-~~d~~-~~~~~l~a~r~i~~GeEVfisYG~~ 309 (506)
+.||++.+||.. .|... .-.+.+.|.|||.+||||+..|..+
T Consensus 1253 finhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1253 FINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred ccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 578888888753 34321 2345678999999999999999764
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=65.43 E-value=4.4 Score=42.39 Aligned_cols=44 Identities=30% Similarity=0.540 Sum_probs=31.9
Q ss_pred cCCCCCCCcceEE---eeC---CCCeEEEEeccccCCCCeeecccCCCCh
Q 010607 268 MLNHSCEVETFLD---YDK---SSQGVVFTTDRQYQPGEQVFISYGKKSN 311 (506)
Q Consensus 268 m~NH~~~~~~~~~---~d~---~~~~~~l~a~r~i~~GeEVfisYG~~sN 311 (506)
++||+..+|..+. .+. .--.+.+.+.++|.+|+|++..||...+
T Consensus 275 finHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 275 FINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred cccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccc
Confidence 6899999887543 221 1124467899999999999999997433
No 14
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.61 E-value=18 Score=37.86 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=54.2
Q ss_pred ceEeeeecccCCCCCCCcc--eEEeeCCCCeEEEEeccccCCCCeeecccCCCChHHHHHhcCcccCCCCCCCCeEEE
Q 010607 259 RVALVPWADMLNHSCEVET--FLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVEL 334 (506)
Q Consensus 259 ~~~LVP~~Dm~NH~~~~~~--~~~~d~~~~~~~l~a~r~i~~GeEVfisYG~~sN~eLL~~YGFv~~~~~Np~D~v~l 334 (506)
..+++|+.+|+|-.-.... .+-+| ..+...+++.|.| |.|..++|+...+.++..+|||...-+--|++.+-+
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D-~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv 343 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMD-VPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV 343 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhc-CCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee
Confidence 4689999999988754322 22344 4567788899988 999999999999999999999543323556666655
No 15
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=60.20 E-value=9.6 Score=38.03 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=29.8
Q ss_pred CCcEEEeeCCCcceEEEcccCCCCCEEEEcCCCCc
Q 010607 91 QKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLV 125 (506)
Q Consensus 91 ~~v~i~~~~~~GrGlvA~~~I~~ge~ll~IP~~l~ 125 (506)
.++.+..+.+.||||+|+..++.|+.|+.---+++
T Consensus 256 egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdli 290 (392)
T KOG1085|consen 256 EGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLI 290 (392)
T ss_pred cceeEEeeccccceeEeecccccCceEEEEeccee
Confidence 57888888899999999999999999987655544
No 16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=41.06 E-value=36 Score=36.22 Aligned_cols=60 Identities=28% Similarity=0.408 Sum_probs=45.1
Q ss_pred ceEeeeecccCCCCCCCcceEEeeCCCCeEEEEeccccCCCC-eeecccCC--CC----hHHHHHhcCc
Q 010607 259 RVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGE-QVFISYGK--KS----NGELLLSYGF 320 (506)
Q Consensus 259 ~~~LVP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~Ge-EVfisYG~--~s----N~eLL~~YGF 320 (506)
..+|.|..=++||+..+|+.+.|+ +....+.+...+.+++ +++++|-. .+ ...|-..|.|
T Consensus 199 ~~~l~~~~~~~~hsC~pn~~~~~~--~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 199 GRGLFPGSSLFNHSCFPNISVIFD--GRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred eeeecccchhcccCCCCCeEEEEC--CceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 468889988999999999987774 4566666777777776 99999975 22 3456666667
No 17
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=40.30 E-value=16 Score=41.53 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=36.0
Q ss_pred cCCCCCCCcceE---EeeCCCCeE---EEEeccccCCCCeeecccCC----CChHHHHHhcC
Q 010607 268 MLNHSCEVETFL---DYDKSSQGV---VFTTDRQYQPGEQVFISYGK----KSNGELLLSYG 319 (506)
Q Consensus 268 m~NH~~~~~~~~---~~d~~~~~~---~l~a~r~i~~GeEVfisYG~----~sN~eLL~~YG 319 (506)
++||++.+|..+ .+|..+-.| .+-+.+-|++|.|++..||= -..-+|+...|
T Consensus 1192 fLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1192 FLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 799999998653 455444444 34578899999999999972 33445555554
No 18
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=30.45 E-value=71 Score=26.97 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=24.9
Q ss_pred EeeCCCCeEEEEeccccCCCCeeecccCCCC
Q 010607 280 DYDKSSQGVVFTTDRQYQPGEQVFISYGKKS 310 (506)
Q Consensus 280 ~~d~~~~~~~l~a~r~i~~GeEVfisYG~~s 310 (506)
..+.....+.+...+.|..||+|.++|-.-+
T Consensus 69 sV~~s~ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 69 SLGGSNTTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred EEcCcccEEEEEecccccCCCEEEEEeeCCC
Confidence 3444556899999999999999999996543
No 19
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=28.97 E-value=46 Score=35.28 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=30.9
Q ss_pred CCeEEEEeccccCCCCeeecccCCCChHHHHHhcC
Q 010607 285 SQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYG 319 (506)
Q Consensus 285 ~~~~~l~a~r~i~~GeEVfisYG~~sN~eLL~~YG 319 (506)
+..+-.++.|+|++|||+.+-||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 45677889999999999999999988888888887
No 20
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=28.26 E-value=41 Score=28.39 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=37.6
Q ss_pred hccHHHHHHHHhhhhccceecCCCCCceEeeeecccCCCCCCCcceEEeeCCCCeEEEEeccccCCCCeeecccCC
Q 010607 233 VFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGK 308 (506)
Q Consensus 233 ~~t~~~f~WA~s~V~SRaf~~~~~~~~~~LVP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~GeEVfisYG~ 308 (506)
..-++.|+|+.-++-+|+..-. |++- ..+.++ +-..++.+.++.|++|.|.||.
T Consensus 8 ~mRLDKwL~~aR~~KrRslAk~-------------~~~~-----GrV~vN----G~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 8 RMRLDKWLWAARFIKRRSLAKE-------------MIEG-----GRVKVN----GQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred ceehHHHHHHHHHhhhHHHHHH-------------HHHC-----CeEEEC----CEEcccccccCCCCEEEEEeCC
Confidence 4568999999999999987421 1111 123332 2233788899999999999986
No 21
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=28.23 E-value=67 Score=26.38 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCCCCCCcEEEeeCCCc---ceEEEcccCCCCCEEE
Q 010607 86 SGLPPQKMAIQKVDVGE---RGLVALKNIRKGEKLL 118 (506)
Q Consensus 86 ~G~~~~~v~i~~~~~~G---rGlvA~~~I~~ge~ll 118 (506)
|... +.+.+......| ..++|+++|++||.|.
T Consensus 79 Hsc~-pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 79 HSCE-PNCELLFVEVNGDSRIVIFALRDIKPGEELT 113 (116)
T ss_pred CCCC-CCEEEEEEEECCCcEEEEEECCCcCCCCEEe
Confidence 4443 445554333332 6789999999999885
No 22
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.68 E-value=69 Score=21.73 Aligned_cols=16 Identities=38% Similarity=0.856 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCCCCC
Q 010607 76 ASTLQKWLSDSGLPPQ 91 (506)
Q Consensus 76 ~~~l~~Wl~~~G~~~~ 91 (506)
..+|.+||.++|+..+
T Consensus 6 ~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3689999999999864
No 23
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.48 E-value=62 Score=36.36 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=24.2
Q ss_pred CcEEEeeCCCcceEEEcccCCCCCEEEE
Q 010607 92 KMAIQKVDVGERGLVALKNIRKGEKLLF 119 (506)
Q Consensus 92 ~v~i~~~~~~GrGlvA~~~I~~ge~ll~ 119 (506)
+|++-.+...|.||.|.++|++|+.|+.
T Consensus 121 ~vevF~Te~KG~GLRA~~dI~~g~FI~E 148 (729)
T KOG4442|consen 121 KVEVFLTEKKGCGLRAEEDIPKGQFILE 148 (729)
T ss_pred ceeEEEecCcccceeeccccCCCcEEee
Confidence 5676667788999999999999999886
No 24
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=22.24 E-value=53 Score=24.39 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=11.2
Q ss_pred ceEEEcccCCCCCEE
Q 010607 103 RGLVALKNIRKGEKL 117 (506)
Q Consensus 103 rGlvA~~~I~~ge~l 117 (506)
+-++|+++|++|+.|
T Consensus 2 ~vvVA~~di~~G~~i 16 (63)
T PF08666_consen 2 RVVVAARDIPAGTVI 16 (63)
T ss_dssp SEEEESSTB-TT-BE
T ss_pred cEEEEeCccCCCCEE
Confidence 358999999999987
Done!