BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010608
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain
Length = 145
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 112/133 (84%), Positives = 123/133 (92%)
Query: 372 TLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSK 431
TLLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSK
Sbjct: 1 TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSK 60
Query: 432 QHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFG 491
QHAVIQ+R+ EKE+PDG K+V+PYI DLGSTNKTY+N++PIEPQRYYELFEKDTIKFG
Sbjct: 61 QHAVIQYREXEKEKPDGXXGKQVKPYIXDLGSTNKTYINESPIEPQRYYELFEKDTIKFG 120
Query: 492 NSSREYVLLHENS 504
NSSREYVLLHENS
Sbjct: 121 NSSREYVLLHENS 133
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p
pdb|3ELV|B Chain B, Crystal Structure Of Full-Length Yeast Pml1p
Length = 205
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 70/168 (41%), Gaps = 39/168 (23%)
Query: 353 PSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQ---- 408
P F SG L E+N G+ L EP DA P + +A + L I+R+
Sbjct: 31 PDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKD 90
Query: 409 ------------SCYLFGRER--------------RVADIPTDHPSCSKQHAVIQFRQVE 442
SCYL GRE VADI + SKQH VIQFR V
Sbjct: 91 KGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR 150
Query: 443 KEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKF 490
G+L + Y+MDL S+N T LN+ I RY EL D +
Sbjct: 151 -----GIL----KCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTL 189
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
pdb|2JKD|B Chain B, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
Length = 187
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 70/168 (41%), Gaps = 39/168 (23%)
Query: 353 PSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQ---- 408
P F SG L E+N G+ L EP DA P + +A + L I+R+
Sbjct: 7 PDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKD 66
Query: 409 ------------SCYLFGRER--------------RVADIPTDHPSCSKQHAVIQFRQVE 442
SCYL GRE VADI + SKQH VIQFR V
Sbjct: 67 KGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR 126
Query: 443 KEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKF 490
G+L + Y+MDL S+N T LN+ I RY EL D +
Sbjct: 127 -----GIL----KCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTL 165
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 374 LFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQH 433
LF+ P A KP L V K G+ L E L I + YLFGR + D DH SCS+ H
Sbjct: 21 LFDCPTWAGKPPPGLHLDVVK-GDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVH 79
Query: 434 AVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNS 493
A + + + K R +++DL ST+ T+L +EP + ++ T+ FG S
Sbjct: 80 AALVYHKHLK-----------RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 128
Query: 494 SREYVL 499
+R Y L
Sbjct: 129 TRAYTL 134
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 375 FNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHA 434
+ EPP + + L K G +L C LFGR D+ +HPS S+ HA
Sbjct: 8 YQEPPWGGPATAPYSLETLKGGTILGTRSLKGTSYC-LFGRLSG-CDVCLEHPSVSRYHA 65
Query: 435 VIQFRQVEKEQPDGML-SKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNS 493
V+Q R PDG S Y+ DLGST+ T+LN I P+ Y + ++FG S
Sbjct: 66 VLQHR---ASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGS 122
Query: 494 SREYVL 499
+R ++L
Sbjct: 123 TRLFIL 128
>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204
Length = 158
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 48/100 (48%), Gaps = 23/100 (23%)
Query: 405 IHRQSCYLFGRER--------------RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGML 450
++ +SCYL GRE VADI + SKQH VIQFR V G+L
Sbjct: 52 LNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR-----GIL 106
Query: 451 SKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKF 490
+ Y+MDL S+N T LN+ I RY EL D +
Sbjct: 107 ----KCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTL 142
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 458 IMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFG 491
I DLGS+N T LN N ++P+ L + D IK G
Sbjct: 69 IQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLG 102
>pdb|2PIE|A Chain A, Crystal Structure Of The Fha Domain Of Rnf8 In Complex
With Its Optimal Phosphopeptide
Length = 138
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 19/81 (23%)
Query: 430 SKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIK 489
S+ H V+ K+ P+G + IMD S N +LN +EP R Y + + D I+
Sbjct: 52 SRNHCVL------KQNPEGQWT------IMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQ 99
Query: 490 FG-------NSSREYVLLHEN 503
G N+ EY + E+
Sbjct: 100 LGVPLENKENAEYEYEVTEED 120
>pdb|2CSW|A Chain A, Solution Structure Of The Fha Domain Of Human Ubiquitin
Ligase Protein Rnf8
Length = 145
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 19/81 (23%)
Query: 430 SKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIK 489
S+ H V+ K+ P+G + IMD S N +LN +EP R Y + + D I+
Sbjct: 60 SRNHCVL------KQNPEGQWT------IMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQ 107
Query: 490 FG-------NSSREYVLLHEN 503
G N+ EY + E+
Sbjct: 108 LGVPLENKENAEYEYEVTEED 128
>pdb|3GQS|A Chain A, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
pdb|3GQS|B Chain B, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
Length = 106
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 383 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVE 442
+PS R+ L V AG + ++ Y+ G + +VADI S S+QHA I
Sbjct: 1 QPS-RFLLKVL-AGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKI------ 52
Query: 443 KEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQ 477
++ + I DLGS N + IE Q
Sbjct: 53 ------IIGNDNSVLIEDLGSKNGVIVEGRKIEHQ 81
>pdb|3VA1|A Chain A, Crystal Structure Of The Mammalian Mdc1 Fha Domain
pdb|3VA1|B Chain B, Crystal Structure Of The Mammalian Mdc1 Fha Domain
pdb|3VA4|A Chain A, Crystal Structure Of The Mammalian Mdc1 Fha Domain
Complexed With Chk2 Pthr68 Peptide
pdb|3VA4|B Chain B, Crystal Structure Of The Mammalian Mdc1 Fha Domain
Complexed With Chk2 Pthr68 Peptide
Length = 132
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 383 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVE 442
+P + RL+ G PLY+ + + GR + + PS SKQHAVI+
Sbjct: 22 EPIGQLRLFSGTHGPERDFPLYLGKN---VVGRSPDCS-VALPFPSISKQHAVIEISAWN 77
Query: 443 KEQPDGMLSKEVRPYIMDLGSTNKTYLNDNP--IEPQRYYELFEKDTIKFGNSSREY 497
K P + D GS N T + P + P + L +++ I F + +Y
Sbjct: 78 KA-----------PILQDCGSLNGTQIVKPPRVLPPGVSHRLRDQELILFADFPCQY 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,765,834
Number of Sequences: 62578
Number of extensions: 405361
Number of successful extensions: 511
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 22
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)