Query 010608
Match_columns 506
No_of_seqs 340 out of 1723
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3elv_A PRE-mRNA leakage protei 100.0 2.6E-35 9E-40 281.4 10.4 137 349-494 27-193 (205)
2 4h87_A Kanadaptin; FHA domain 100.0 8.4E-32 2.9E-36 239.1 15.4 125 372-500 5-129 (130)
3 3els_A PRE-mRNA leakage protei 100.0 3.1E-29 1.1E-33 229.7 8.4 122 370-500 1-156 (158)
4 2jpe_A Nuclear inhibitor of pr 99.9 1.5E-27 5.1E-32 212.4 7.9 135 356-504 4-139 (140)
5 3gqs_A Adenylate cyclase-like 99.9 1.8E-22 6.3E-27 171.5 12.1 103 384-501 1-103 (106)
6 1uht_A Expressed protein; FHA 99.9 2.7E-22 9.3E-27 173.1 11.4 105 384-502 9-113 (118)
7 3va4_A Mediator of DNA damage 99.8 1.2E-20 4E-25 168.2 12.4 103 387-503 24-129 (132)
8 2kfu_A RV1827 PThr 22; FHA dom 99.8 1.6E-20 5.4E-25 173.0 13.6 97 384-499 52-148 (162)
9 1r21_A Antigen KI-67; beta san 99.8 1.5E-20 5.1E-25 164.6 12.0 104 380-500 5-108 (128)
10 2xt9_B Putative signal transdu 99.8 2.2E-20 7.6E-25 161.0 12.9 98 383-499 7-104 (115)
11 1mzk_A Kinase associated prote 99.8 1.4E-20 4.9E-25 167.5 11.9 104 387-503 7-122 (139)
12 2kb3_A Oxoglutarate dehydrogen 99.8 3.1E-20 1.1E-24 167.4 13.8 98 383-499 42-139 (143)
13 2jqj_A DNA damage response pro 99.8 4.9E-20 1.7E-24 166.1 14.0 103 389-501 20-123 (151)
14 1g3g_A Protien kinase SPK1; FH 99.8 5E-20 1.7E-24 168.7 11.4 115 371-502 19-148 (164)
15 3hx1_A SLR1951 protein; P74513 99.8 1.4E-19 5E-24 160.4 12.6 103 386-502 9-116 (131)
16 3po8_A RV0020C protein, putati 99.8 1.8E-19 6.1E-24 151.4 12.2 92 388-500 6-97 (100)
17 2pie_A E3 ubiquitin-protein li 99.8 2.8E-19 9.7E-24 159.0 13.1 92 385-492 7-102 (138)
18 2csw_A Ubiquitin ligase protei 99.8 1E-19 3.6E-24 163.2 8.7 92 385-492 15-110 (145)
19 1dmz_A Protein (protein kinase 99.8 1.8E-19 6.2E-24 164.3 10.0 111 390-503 8-126 (158)
20 1gxc_A CHK2, CDS1, serine/thre 99.8 5.8E-19 2E-23 159.0 12.4 103 386-502 28-141 (149)
21 1lgp_A Cell cycle checkpoint p 99.8 8.6E-19 2.9E-23 150.5 10.1 98 389-501 6-110 (116)
22 1qu5_A Protein kinase SPK1; FH 99.8 6.7E-19 2.3E-23 164.6 8.2 102 400-503 41-150 (182)
23 3oun_A Putative uncharacterize 99.8 2.5E-18 8.5E-23 158.2 11.1 80 400-497 77-156 (157)
24 1g6g_A Protein kinase RAD53; b 99.7 9E-18 3.1E-22 147.2 11.9 79 409-501 36-119 (127)
25 1wln_A Afadin; beta sandwich, 99.7 1.2E-17 4.2E-22 145.0 11.5 90 388-493 12-106 (120)
26 4ejq_A Kinesin-like protein KI 99.7 6E-17 2.1E-21 147.3 12.7 101 389-501 40-143 (154)
27 2ff4_A Probable regulatory pro 99.7 4.6E-17 1.6E-21 164.7 11.3 86 401-503 299-384 (388)
28 3huf_A DNA repair and telomere 99.7 5.9E-17 2E-21 163.6 8.6 112 388-503 2-115 (325)
29 3fm8_A Kinesin-like protein KI 99.6 2.3E-15 7.8E-20 133.4 10.8 94 388-500 27-122 (124)
30 3i6u_A CDS1, serine/threonine- 99.4 1.2E-12 4E-17 131.5 11.8 93 389-495 12-113 (419)
31 3uv0_A Mutator 2, isoform B; F 99.4 1.3E-12 4.5E-17 113.1 10.2 80 402-500 14-100 (102)
32 4a0e_A YSCD, type III secretio 99.4 2.6E-12 9E-17 114.5 10.4 94 387-500 4-98 (123)
33 3kt9_A Aprataxin; FHA domain, 99.2 6.6E-11 2.2E-15 102.3 11.4 87 401-502 15-101 (102)
34 4egx_A Kinesin-like protein KI 99.1 2.9E-10 9.8E-15 106.6 12.8 101 388-501 69-173 (184)
35 1wv3_A Similar to DNA segregat 99.0 8.9E-10 3E-14 106.5 9.1 80 401-497 85-166 (238)
36 2brf_A Bifunctional polynucleo 99.0 2E-09 6.9E-14 94.3 9.6 86 402-502 21-107 (110)
37 1yj5_C 5' polynucleotide kinas 98.9 4E-09 1.4E-13 96.3 9.9 95 388-500 10-107 (143)
38 1ujx_A Polynucleotide kinase 3 98.8 2.9E-09 1E-13 94.5 6.0 95 388-500 17-114 (119)
39 1wv3_A Similar to DNA segregat 68.6 8.7 0.0003 36.8 6.5 45 389-439 3-47 (238)
40 2k6p_A Uncharacterized protein 52.3 14 0.00048 29.8 4.0 33 465-499 26-58 (92)
41 1dm9_A Hypothetical 15.5 KD pr 47.7 17 0.00058 32.0 4.1 31 465-497 34-64 (133)
42 2k5p_A THis protein, thiamine- 40.5 9.9 0.00034 30.7 1.3 25 466-490 36-62 (78)
43 2cu3_A Unknown function protei 40.1 12 0.00043 28.4 1.8 24 467-490 32-57 (64)
44 2k9x_A Tburm1, uncharacterized 39.7 11 0.00038 32.5 1.6 24 467-490 70-95 (110)
45 1p9k_A ORF, hypothetical prote 38.2 19 0.00066 28.4 2.7 31 465-496 46-76 (79)
46 2kl0_A Putative thiamin biosyn 38.0 8.4 0.00029 30.7 0.5 25 466-490 32-58 (73)
47 1tyg_B YJBS; alpha beta barrel 36.9 15 0.00052 30.4 2.0 24 467-490 55-80 (87)
48 3mml_A Allophanate hydrolase s 36.5 58 0.002 33.1 6.5 39 462-500 78-119 (318)
49 2q5w_D Molybdopterin convertin 35.0 25 0.00084 27.1 2.8 22 467-490 49-70 (77)
50 1wgk_A Riken cDNA 2900073H19 p 34.9 12 0.00041 32.3 1.1 24 467-490 76-101 (114)
51 3po0_A Small archaeal modifier 34.1 25 0.00087 27.9 2.8 23 466-490 60-82 (89)
52 2hj1_A Hypothetical protein; s 31.3 17 0.0006 30.7 1.5 29 460-491 55-83 (97)
53 3hvz_A Uncharacterized protein 31.0 25 0.00085 28.5 2.3 24 466-491 43-66 (78)
54 2g1e_A Hypothetical protein TA 30.0 26 0.00088 27.7 2.2 24 467-490 58-83 (90)
55 1fm0_D Molybdopterin convertin 29.8 35 0.0012 26.4 2.9 22 467-490 53-74 (81)
56 3rpf_C Molybdopterin convertin 29.2 29 0.00098 27.0 2.3 23 467-490 45-67 (74)
57 3dwg_C 9.5 kDa culture filtrat 29.1 28 0.00096 27.9 2.3 24 467-490 61-86 (93)
58 1vjk_A Molybdopterin convertin 28.4 31 0.0011 28.2 2.5 22 467-490 70-91 (98)
59 1ryj_A Unknown; beta/alpha pro 28.1 42 0.0014 26.0 3.1 22 467-490 42-63 (70)
60 2l52_A Methanosarcina acetivor 27.5 24 0.00083 29.1 1.7 28 463-490 63-92 (99)
61 1f0z_A THis protein; ubiquitin 27.0 12 0.0004 28.7 -0.4 24 467-490 34-59 (66)
62 2qjl_A URM1, ubiquitin-related 25.1 36 0.0012 27.9 2.3 24 467-490 67-92 (99)
63 1rws_A Hypothetical protein PF 24.1 20 0.00068 28.3 0.5 23 466-490 48-70 (77)
64 2eki_A DRG 1, developmentally- 20.1 36 0.0012 28.9 1.3 23 467-491 63-85 (93)
No 1
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=100.00 E-value=2.6e-35 Score=281.39 Aligned_cols=137 Identities=37% Similarity=0.531 Sum_probs=97.3
Q ss_pred hccCCCccccccchhcccccCCccccccCCCCCCCCCC-------------ceEEEEEecCc---eeeeeEEecccceee
Q 010608 349 EKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSV-------------RWRLYVFKAGE---MLKEPLYIHRQSCYL 412 (506)
Q Consensus 349 ~KekPnFe~SG~La~etNtv~GVtLkYsePpeArkP~~-------------~wrL~VfKdGe---~i~e~I~L~rks~yl 412 (506)
.+++|||++||+|++++|+++||+|+|++|+||++|.. .|.|+||++|. .+.+.|.|..+++|+
T Consensus 27 ~~~~pnf~~sg~L~~~~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~~~s~y~ 106 (205)
T 3elv_A 27 IDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYL 106 (205)
T ss_dssp -------------------------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECSSCSEEE
T ss_pred ccccCCCcccccchhhhcccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEecCCCcee
Confidence 46999999999999999999999999999999999854 36799999775 256789998889999
Q ss_pred ecccc--------------cccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCC
Q 010608 413 FGRER--------------RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQR 478 (506)
Q Consensus 413 IGRdr--------------~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r 478 (506)
|||++ ..|||+|+|++||++||+|++... .+...|||+||+|+|||||||++|.+..
T Consensus 107 IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~---------~~~~~~~l~DLgStNGTfVNG~rI~~~~ 177 (205)
T 3elv_A 107 VGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV---------RGILKCYVMDLDSSNGTCLNNVVIPGAR 177 (205)
T ss_dssp EEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEE---------TTEEEEEEEECSCSSCCEETTEECCBTS
T ss_pred ecccccccccccccccccCccceEEeCCCCCCcccEEEEEecC---------CCceeEEEEeCCCCCCCeECCEECCCCc
Confidence 99983 359999999999999999999742 0123599999999999999999999999
Q ss_pred eeecCCCCEEEEcCce
Q 010608 479 YYELFEKDTIKFGNSS 494 (506)
Q Consensus 479 ~~eL~dGDvIkFG~St 494 (506)
+++|.+||+|+||.++
T Consensus 178 ~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 178 YIELRSGDVLTLSEFE 193 (205)
T ss_dssp CEECCTTCEEESSSSG
T ss_pred eeECCCCCEEEECCCC
Confidence 9999999999999865
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.97 E-value=8.4e-32 Score=239.15 Aligned_cols=125 Identities=31% Similarity=0.496 Sum_probs=106.4
Q ss_pred cccccCCCCCCCCCCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCC
Q 010608 372 TLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLS 451 (506)
Q Consensus 372 tLkYsePpeArkP~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~ 451 (506)
..+|.+|+||.+|...|+|+|+++| ...+.+.|..+.+|+|||+ ..|||+|+|++||++||+|+|+....... ...
T Consensus 5 ~ppy~~P~wa~~p~~~~~L~v~k~g-~~~~~~~L~~~~~~~IGR~-~~~di~l~~~~VSr~HA~I~~r~~~~~~~--~~~ 80 (130)
T 4h87_A 5 APPYQEPPWGGPATAPYSLETLKGG-TILGTRSLKGTSYCLFGRL-SGCDVCLEHPSVSRYHAVLQHRASGPDGE--CDS 80 (130)
T ss_dssp CCSCCCCTTBCCCCSCCEEEEEETT-EEEEEEECTTCSEEEEESS-TTSSEECCCTTSCSSCEEEEEBCCCCCC------
T ss_pred CcCCCCCCCccCCCCCEEEEEEECC-eeeeeEEeCCCceEEEcCC-cCCCEEeCCCCcchhcEEEEEecccCccc--eec
Confidence 4569999999999999999999965 4557899988899999998 68999999999999999999974321110 012
Q ss_pred CccceEEEeCCCCCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010608 452 KEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 500 (506)
Q Consensus 452 g~~r~yLiDLgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl 500 (506)
....|||+||+|+|||||||++|.++.+++|.+||+|+||.++++|||+
T Consensus 81 ~~~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl~ 129 (130)
T 4h87_A 81 NGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQ 129 (130)
T ss_dssp --CCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEETTCSEEEEEE
T ss_pred cCCcceEeeCCCCCceEECCEECCCCceeECCCCCEEEECCceEEEEEc
Confidence 3458999999999999999999999999999999999999999999986
No 3
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.1e-29 Score=229.75 Aligned_cols=122 Identities=36% Similarity=0.530 Sum_probs=100.1
Q ss_pred CccccccCCCCCCCCCC-------------ceEEEEEecCce---eeeeEEecccceeeecccc--------------cc
Q 010608 370 GVTLLFNEPPDARKPSV-------------RWRLYVFKAGEM---LKEPLYIHRQSCYLFGRER--------------RV 419 (506)
Q Consensus 370 GVtLkYsePpeArkP~~-------------~wrL~VfKdGe~---i~e~I~L~rks~ylIGRdr--------------~~ 419 (506)
||+|+|.+|++|.+|.. .|.|+||++|.. +.+.|.|..+.+|+|||++ ..
T Consensus 1 ~~~l~~~ep~~a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~ 80 (158)
T 3els_A 1 GAMGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVV 80 (158)
T ss_dssp ----CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCC
T ss_pred CceeEecCCccccCCchhhhccccCcccCCceEEEEEeCCccCcccceEEEecCCCceEecccccccccccccccccccc
Confidence 78999999999999953 367999997752 5678999999999999984 35
Q ss_pred cceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCCeeecCCCCEEEEcCce----E
Q 010608 420 ADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS----R 495 (506)
Q Consensus 420 cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~St----r 495 (506)
|||+|+|++||++||+|++... .+...|||+||+|+|||||||++|.++.+++|.+||+|+||.++ .
T Consensus 81 ~Di~l~~~~VSr~HA~I~~~~~---------~~~~~~~l~Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s~~~~~~ 151 (158)
T 3els_A 81 ADIGIPEETSSKQHCVIQFRNV---------RGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDNDY 151 (158)
T ss_dssp CSEEECCTTSCSSCEEEEEEEE---------TTEEEEEEEECSCSSCCEETTEECCTTCCEECCTTEEEESSSCGGGCCE
T ss_pred CCEEcCCCCCCcccEEEEEEcc---------CCeeEEEEEeCCCCCccEECCEEcCCCceEEcCCCCEEEECCCCCCCCE
Confidence 9999999999999999999742 01235999999999999999999999999999999999999764 4
Q ss_pred EEEEe
Q 010608 496 EYVLL 500 (506)
Q Consensus 496 eYVLl 500 (506)
+|+|+
T Consensus 152 elvF~ 156 (158)
T 3els_A 152 ELIFM 156 (158)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 4
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.94 E-value=1.5e-27 Score=212.39 Aligned_cols=135 Identities=34% Similarity=0.519 Sum_probs=114.3
Q ss_pred cccccchhcccccCCccccccCCCCCCCCCCceEEEEEecCceeeeeEEecccceeeecccccc-cceecCCCCcCccce
Q 010608 356 ELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRV-ADIPTDHPSCSKQHA 434 (506)
Q Consensus 356 e~SG~La~etNtv~GVtLkYsePpeArkP~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~-cDIvLddPSVSRqHA 434 (506)
+.++.|+.++|.... ++.|.+|.|+..|...|.|+|++ |......|.|.....++|||+ .. |||+|+++.||++||
T Consensus 4 g~~~~~~~~~~~~~~-~~~~~~P~~a~~p~~~~~L~v~~-g~~~g~~~~l~~~~~~~IGR~-~~~~di~l~d~~VSr~Ha 80 (140)
T 2jpe_A 4 GSPNSMAAAVNSGSS-LPLFDCPTWAGKPPPGLHLDVVK-GDKLIEKLIIDEKKYYLFGRN-PDLCDFTIDHQSCSRVHA 80 (140)
T ss_dssp -----CCCCCCSSSC-CCSCCCCSSBCCCCSSCBEEEES-SSSEEEEECCSSCSBCCBSSC-TTTSSSCCCCSSSCTTSB
T ss_pred CcCCcccccccccCC-ccccCCCCcccCCCcCEEEEEEc-CCCcceEEEeCCCCeEEecCC-CccCCEEeCCCCcChhhe
Confidence 445678888888876 67999999999999999999998 555667788877667999998 55 999999999999999
Q ss_pred EEEEecccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEEeecCC
Q 010608 435 VIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENS 504 (506)
Q Consensus 435 vIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl~e~s 504 (506)
.|.+... ...|||+||+|+|||||||++|.++.++.|.+||+|.||.+.+.|+|...+.
T Consensus 81 ~i~~~~~-----------~~~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G~~~~~f~~~~~p~ 139 (140)
T 2jpe_A 81 ALVYHKH-----------LKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQ 139 (140)
T ss_dssp EEEEBSS-----------SCCEEEECCSCSSCEESSSCEECSSSCCEECTTCCBBCSSCCCCBCCBCCCC
T ss_pred EEEEECC-----------CCcEEEEECCCCCCeEECCEECCCCccEECCCCCEEEECCceEEEEEecCCC
Confidence 9999731 2479999999999999999999998889999999999999999998876553
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.88 E-value=1.8e-22 Score=171.48 Aligned_cols=103 Identities=26% Similarity=0.324 Sum_probs=86.5
Q ss_pred CCCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCC
Q 010608 384 PSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGS 463 (506)
Q Consensus 384 P~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgS 463 (506)
|+..|.|.++. |......|.|.....|+|||+...|||+|+++.||++||.|.+.. .+.|||+||+|
T Consensus 1 p~~~~~L~v~~-G~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~------------~~~~~l~Dl~S 67 (106)
T 3gqs_A 1 QPSRFLLKVLA-GANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN------------DNSVLIEDLGS 67 (106)
T ss_dssp --CEEEEEECC--CCTTCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT------------TSCEEEEECSC
T ss_pred CCceEEEEEEe-CCCCcEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC------------CCcEEEEECcC
Confidence 45679999998 777778899987667999998337999999999999999999862 23699999999
Q ss_pred CCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEEee
Q 010608 464 TNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 501 (506)
Q Consensus 464 TNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl~ 501 (506)
+|||||||++|.. .+.|.+||+|.||...+.|+-..
T Consensus 68 ~nGt~vng~~i~~--~~~L~~Gd~i~~G~~~~~~~~~~ 103 (106)
T 3gqs_A 68 KNGVIVEGRKIEH--QSTLSANQVVALGTTLFLLVDYA 103 (106)
T ss_dssp SSCCEETTEECSS--EEECCTTCCEEETTEEEEEEEEC
T ss_pred CCCeEECCEECCC--CeECCCCCEEEECCEEEEEEccC
Confidence 9999999999986 56999999999999987776543
No 6
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.87 E-value=2.7e-22 Score=173.08 Aligned_cols=105 Identities=29% Similarity=0.305 Sum_probs=89.4
Q ss_pred CCCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCC
Q 010608 384 PSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGS 463 (506)
Q Consensus 384 P~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgS 463 (506)
+.+.|.|.++. |......|.|.....++|||+...|||+|+++.||++||.|.+.. ..|||+||+|
T Consensus 9 ~~p~l~L~v~~-g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl~S 74 (118)
T 1uht_A 9 VTPSLRLVFVK-GPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-------------GNWVIQDLGS 74 (118)
T ss_dssp CSCEEEEEESS-STTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-------------SSEEEECCCC
T ss_pred CCCeEEEEEEe-CCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC-------------CEEEEEECCC
Confidence 34568888887 655556778876567999998458999999999999999999863 4799999999
Q ss_pred CCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEEeec
Q 010608 464 TNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHE 502 (506)
Q Consensus 464 TNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl~e 502 (506)
+|||||||++|.++.++.|.+||+|.||...+.|+.+..
T Consensus 75 ~nGT~vng~~l~~~~~~~L~~gd~i~lG~~~~~~~~~~~ 113 (118)
T 1uht_A 75 SNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVS 113 (118)
T ss_dssp SSCCEESSSBCCTTCEEECCTTEEEEETTTEEEEEEEEC
T ss_pred CCCeEECCEECCCCCeEEcCCCCEEEECCeEEEEEEEec
Confidence 999999999999988999999999999999877665543
No 7
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.84 E-value=1.2e-20 Score=168.16 Aligned_cols=103 Identities=26% Similarity=0.327 Sum_probs=87.4
Q ss_pred ceEEEEEecCce-eeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCC
Q 010608 387 RWRLYVFKAGEM-LKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 465 (506)
Q Consensus 387 ~wrL~VfKdGe~-i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTN 465 (506)
...|.|+. |.. ....|.|.. ..++|||+ ..|||+|+++.||++||.|.+... ...|||+||+|+|
T Consensus 24 ~g~L~v~~-g~~~~g~~~~L~~-~~~~IGR~-~~~di~l~d~~VSr~HA~i~~~~~-----------~~~~~l~Dl~S~N 89 (132)
T 3va4_A 24 IGQLRLFS-GTHGPERDFPLYL-GKNVVGRS-PDCSVALPFPSISKQHAVIEISAW-----------NKAPILQDCGSLN 89 (132)
T ss_dssp SEEEEECC-BTTBSCEEEEECS-EEEEEESS-TTSSEECCCTTSCTTCEEEEECST-----------TSCCEEEECSCSS
T ss_pred cEEEEEEe-CCCCCceEEEECC-CCEEEccC-CCCCEEeCCCCcChhHEEEEEEcC-----------CCEEEEEECCCCC
Confidence 34788887 444 667788864 56999998 689999999999999999998631 2479999999999
Q ss_pred cceeCCee--cCCCCeeecCCCCEEEEcCceEEEEEeecC
Q 010608 466 KTYLNDNP--IEPQRYYELFEKDTIKFGNSSREYVLLHEN 503 (506)
Q Consensus 466 GTfVNGeR--I~~~r~~eL~dGDvIkFG~StreYVLl~e~ 503 (506)
||||||++ |.++.++.|.+||+|.||...+.|+.+..+
T Consensus 90 GT~vNg~~i~l~~~~~~~L~~GD~I~lG~~~l~f~~~~~p 129 (132)
T 3va4_A 90 GTQIVKPPRVLPPGVSHRLRDQELILFADFPCQYHRLDVP 129 (132)
T ss_dssp CEEETTTTEEECTTCCEECCTTCEEEETTEEEEEEECCCC
T ss_pred CeEECCEEcccCCCCEEECCCCCEEEECCEEEEEEECCCC
Confidence 99999998 678888999999999999999999887654
No 8
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.84 E-value=1.6e-20 Score=173.02 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=83.0
Q ss_pred CCCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCC
Q 010608 384 PSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGS 463 (506)
Q Consensus 384 P~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgS 463 (506)
|...|.|.|+. |......|.|.. ..++|||+ ..|||+|+++.||++||.|.+.. ..|||+||+|
T Consensus 52 p~~~~~L~v~~-G~~~g~~~~L~~-~~~~IGR~-~~~di~l~d~~VSr~HA~I~~~~-------------~~~~l~DlgS 115 (162)
T 2kfu_A 52 PPGSALLVVKR-GPNAGSRFLLDQ-AITSAGRH-PDSDIFLDDVTVSRRHAEFRLEN-------------NEFNVVDVGS 115 (162)
T ss_dssp CSSCCEEEEEE-STTCSCEEETTS-SEEEEESC-SSSSEESTTTSSSSCSEEEEEET-------------TEEEEECCCC
T ss_pred CCccEEEEEEe-CCCCCeEEEECC-CCEEECCC-CCCCEEECCCCcChhhEEEEEEC-------------CEEEEEECCC
Confidence 44568888888 666666788864 67999998 68999999999999999999963 4899999999
Q ss_pred CCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEE
Q 010608 464 TNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL 499 (506)
Q Consensus 464 TNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVL 499 (506)
+|||||||++|. .+.|.+||+|.||...+.|.+
T Consensus 116 ~NGT~VNg~~i~---~~~L~~GD~I~iG~~~l~f~~ 148 (162)
T 2kfu_A 116 LNGTYVNREPVD---SAVLANGDEVQIGKFRLVFLT 148 (162)
T ss_dssp SSCEEETTBCCS---EEECCSSCEEEETTEEEEEEC
T ss_pred CCCeEECCEEcc---eEECCCCCEEEECCEEEEEEe
Confidence 999999999998 469999999999998766654
No 9
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.83 E-value=1.5e-20 Score=164.56 Aligned_cols=104 Identities=26% Similarity=0.227 Sum_probs=84.6
Q ss_pred CCCCCCCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEE
Q 010608 380 DARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIM 459 (506)
Q Consensus 380 eArkP~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLi 459 (506)
+.......+.|+++..+......|.|.. ..++|||+ ..|||+|+++.||++||.|.+.. ..|||.
T Consensus 5 ~~g~~~~~~~L~v~~~~~~~g~~~~l~~-~~~~IGR~-~~~di~l~d~~VSr~Ha~i~~~~-------------~~~~l~ 69 (128)
T 1r21_A 5 FPGGMWPTRRLVTIKRSGVDGPHFPLSL-STCLFGRG-IECDIRIQLPVVSKQHCKIEIHE-------------QEAILH 69 (128)
T ss_dssp ----CCCCEEEEEEEETTEEEEEEECCS-SEEEEESS-TTSSEECCCTTSCTTCEEEEECS-------------SCEEEC
T ss_pred cCCCCCCceEEEEEeCCCCCceEEEECC-CCEEECCC-CCCCEEECCCCCChhHEEEEEEC-------------CEEEEE
Confidence 3333344578888875455567788864 67999998 68999999999999999999862 479999
Q ss_pred eCCCCCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010608 460 DLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 500 (506)
Q Consensus 460 DLgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl 500 (506)
||+|+|||||||++|.. ++.|.+||+|.||...+.|...
T Consensus 70 Dl~S~nGt~vNg~~i~~--~~~L~~Gd~i~iG~~~~~~~~~ 108 (128)
T 1r21_A 70 NFSSTNPTQVNGSVIDE--PVRLKHGDVITIIDRSFRYENE 108 (128)
T ss_dssp CCCSSSCCEETTEECSS--CEECCTTEEEECSSCEEEEEEC
T ss_pred ECCCCCCEEECCEECCC--cEEcCCCCEEEECCEEEEEEeC
Confidence 99999999999999983 6799999999999988777654
No 10
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.83 E-value=2.2e-20 Score=161.00 Aligned_cols=98 Identities=24% Similarity=0.321 Sum_probs=83.2
Q ss_pred CCCCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCC
Q 010608 383 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 462 (506)
Q Consensus 383 kP~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLg 462 (506)
.|...|.|.++. |......|.|.. ..++|||+ ..|||+|+++.||++||.|.+.. ..|||+||+
T Consensus 7 ~p~~~~~L~v~~-g~~~g~~~~l~~-~~~~IGR~-~~~di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl~ 70 (115)
T 2xt9_B 7 LPSGSALLVVKR-GPNAGSRFLLDQ-PTTSAGRH-PDSDIFLDDVTVSRRHAEFRLEG-------------GEFQVVDVG 70 (115)
T ss_dssp -CCSCEEEEEEE-STTTTCEEEECS-SEEEEESS-TTSSEECCSTTSCSSCEEEEEET-------------TEEEEEECS
T ss_pred CCCCcEEEEEEe-CCCCCeEEEECC-CCEEECCC-CCCCEEeCCcccChhheEEEEEC-------------CEEEEEECC
Confidence 345568888887 656667788864 57999998 68999999999999999999963 489999999
Q ss_pred CCCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEE
Q 010608 463 STNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL 499 (506)
Q Consensus 463 STNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVL 499 (506)
|+|||||||++|. .+.|.+||+|+||...+.|..
T Consensus 71 S~nGt~vng~~i~---~~~L~~gd~i~iG~~~l~~~~ 104 (115)
T 2xt9_B 71 SLNGTYVNREPVD---SAVLANGDEVQIGKFRLVFLT 104 (115)
T ss_dssp CSSCEEETTEECS---EEEECTTCEEEETTEEEEEEC
T ss_pred CCCCeEECCEEcc---eEECCCCCEEEECCEEEEEEe
Confidence 9999999999998 479999999999998766654
No 11
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.83 E-value=1.4e-20 Score=167.48 Aligned_cols=104 Identities=23% Similarity=0.316 Sum_probs=88.3
Q ss_pred ceEEEEEecCceeeeeEEeccc----ceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCC
Q 010608 387 RWRLYVFKAGEMLKEPLYIHRQ----SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 462 (506)
Q Consensus 387 ~wrL~VfKdGe~i~e~I~L~rk----s~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLg 462 (506)
.|.|.|+. |......|.|... ..++|||+ ..|||+|+++.||++||.|.+... ...|||+||+
T Consensus 7 ~~~L~v~~-G~~~g~~~~l~~~~~~~~~~~IGR~-~~~di~l~d~~VSr~Ha~i~~~~~-----------~~~~~l~Dlg 73 (139)
T 1mzk_A 7 WLFLEVIA-GPAIGLQHAVNSTSSSKLPVKLGRV-SPSDLALKDSEVSGKHAQITWNST-----------KFKWELVDMG 73 (139)
T ss_dssp EEEEEECS-STTCSCEEEECTTCSTTCSEEEESS-SSCSEECCCTTSSSEEEEEEEETT-----------TTEEEEEETT
T ss_pred eEEEEEEe-CCCCCeEEEecCCCCccceEEeeCC-CCCCEEeCCCCCChHHcEEEEECC-----------CCEEEEEECC
Confidence 47888887 6666777888653 36999998 689999999999999999999741 2379999999
Q ss_pred CCCcceeCCeecCC--------CCeeecCCCCEEEEcCceEEEEEeecC
Q 010608 463 STNKTYLNDNPIEP--------QRYYELFEKDTIKFGNSSREYVLLHEN 503 (506)
Q Consensus 463 STNGTfVNGeRI~~--------~r~~eL~dGDvIkFG~StreYVLl~e~ 503 (506)
|+|||||||++|.. +.++.|.+||+|+||...+.|+.+...
T Consensus 74 S~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~~~~~~~~~ 122 (139)
T 1mzk_A 74 SLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQ 122 (139)
T ss_dssp CSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSSSCEEEEEEEEC
T ss_pred CCCCEEECCEECcCcccccccCCceEECCCCCEEEECCEEEEEEEcCCC
Confidence 99999999999984 678999999999999999988766543
No 12
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.83 E-value=3.1e-20 Score=167.44 Aligned_cols=98 Identities=23% Similarity=0.296 Sum_probs=83.5
Q ss_pred CCCCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCC
Q 010608 383 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 462 (506)
Q Consensus 383 kP~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLg 462 (506)
.|...|.|.|+. |......|.|.. ..++|||+ ..|||+|+++.||++||.|.+.. ..|||.||+
T Consensus 42 ~p~~~~~L~v~~-G~~~g~~~~L~~-~~~~IGR~-~~~di~l~d~~VSr~Ha~I~~~~-------------~~~~l~Dlg 105 (143)
T 2kb3_A 42 LPAGSALLVVKR-GPNAGARFLLDQ-PTTTAGRH-PESDIFLDDVTVSRRHAEFRINE-------------GEFEVVDVG 105 (143)
T ss_dssp CSSSCEEEEEEE-STTTTCEEEECS-SEEEESSC-TTCSBCCCCSSCCSSSEEEEEET-------------TEEEEEESC
T ss_pred CCCccEEEEEEe-CCCCCeEEEeCC-CCeeccCC-CCCCEEeCCCCcChhhEEEEEEC-------------CEEEEEECC
Confidence 345568899988 655666788864 67999998 68999999999999999999962 489999999
Q ss_pred CCCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEE
Q 010608 463 STNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL 499 (506)
Q Consensus 463 STNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVL 499 (506)
|+|||||||++|. .+.|.+||+|+||...+.|..
T Consensus 106 S~NGT~VNg~~i~---~~~L~~GD~I~iG~~~l~f~~ 139 (143)
T 2kb3_A 106 SLNGTYVNREPRN---AQVMQTGDEIQIGKFRLVFLA 139 (143)
T ss_dssp CSSCCEETTEECS---EEECCTTEEEEETTEEEEEEE
T ss_pred CcCCeEECCEEcc---eEECCCCCEEEECCEEEEEEe
Confidence 9999999999998 469999999999997766653
No 13
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.83 E-value=4.9e-20 Score=166.09 Aligned_cols=103 Identities=25% Similarity=0.335 Sum_probs=79.1
Q ss_pred EEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcce
Q 010608 389 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTY 468 (506)
Q Consensus 389 rL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTf 468 (506)
.|+++..+ ....|.|..+..++|||+ ..|||+|+++.||++||.|.+......+ .....|||+|| |+||||
T Consensus 20 ~L~~~~~~--~g~~~~l~~~~~~~IGR~-~~~di~l~d~~VSr~Ha~I~~~~~~~~~-----~~~~~~~l~Dl-S~NGT~ 90 (151)
T 2jqj_A 20 HLVNLIPG--KEQKVEITNRNVTTIGRS-RSCDVILSEPDISTFHAEFHLLQMDVDN-----FQRNLINVIDK-SRNGTF 90 (151)
T ss_dssp EEEEEETT--EEEEEEEECCSCEEEESS-TTSSEECCCTTCCTTSEEEEEEEEEETT-----EEEEEEEEEEC-CSSCEE
T ss_pred EEEEecCC--CceEEEEcCCCeEEeCCC-CCCCEEECCCCCccccCEEEEecccCCc-----CcCCEEEEEEC-CCCCeE
Confidence 45555532 345677865577999998 6899999999999999999994211000 01358999999 999999
Q ss_pred eCCeecCCCCeeecCCCCEEEEcCc-eEEEEEee
Q 010608 469 LNDNPIEPQRYYELFEKDTIKFGNS-SREYVLLH 501 (506)
Q Consensus 469 VNGeRI~~~r~~eL~dGDvIkFG~S-treYVLl~ 501 (506)
|||++|..+ ++.|.+||+|.||.+ .+.|.+..
T Consensus 91 VNg~~i~~~-~~~L~~GD~I~lG~~~~~~f~~~~ 123 (151)
T 2jqj_A 91 INGNRLVKK-DYILKNGDRIVFGKSCSFLFKYAS 123 (151)
T ss_dssp ETTEECCSS-CEEECSSEEEEETTTEEEEEEECS
T ss_pred ECCEEcCCC-ceECCCCCEEEECCCcEEEEEEcC
Confidence 999999988 899999999999994 44555443
No 14
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.81 E-value=5e-20 Score=168.71 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=93.0
Q ss_pred ccccccCCCCCCCCCCceEEEEEecCceeeeeEEeccc----------ceeeecccccccceecCCC-CcCccceEEEEe
Q 010608 371 VTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQ----------SCYLFGRERRVADIPTDHP-SCSKQHAVIQFR 439 (506)
Q Consensus 371 VtLkYsePpeArkP~~~wrL~VfKdGe~i~e~I~L~rk----------s~ylIGRdr~~cDIvLddP-SVSRqHAvIq~r 439 (506)
+..+|+. ++..+...|.|+|+. |......|.|... ..|+|||+ ..|||+|+++ .||++||.|.+.
T Consensus 19 ~i~~~~~--e~~~~~~~~~L~v~~-G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~-~~~di~l~d~~~vSr~Ha~I~~~ 94 (164)
T 1g3g_A 19 LIEKFSQ--EQIGENIVCRVICTT-GQIPIRDLSADISQVLKEKRSIKKVWTFGRN-PACDYHLGNISRLSNKHFQILLG 94 (164)
T ss_dssp HHHHHHC--CCCCSSCCEEEECSS-SSSCCEEECCCHHHHHHCSSSCCEEEEEESS-SSSSEECCCCTTTTSSCEEEEEC
T ss_pred eeeeccc--cccCCCccEEEEEec-CCCCCeEEEeccccccccccccCCcEEECCC-CCCCEEeCCcCCcChhHEEEEEC
Confidence 4455653 555667789999998 7666667777632 37999998 5799999998 699999999985
Q ss_pred cccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCCeeecCCCCEEEEcCc----eEEEEEeec
Q 010608 440 QVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNS----SREYVLLHE 502 (506)
Q Consensus 440 ~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~S----treYVLl~e 502 (506)
. .+.|||.|| |+|||||||++|..+.++.|.+||+|.||.+ ...|+|.+.
T Consensus 95 ~------------~g~~~l~Dl-S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~ 148 (164)
T 1g3g_A 95 E------------DGNLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIN 148 (164)
T ss_dssp S------------TTCEEEEEC-CSSCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEEC
T ss_pred C------------CCCEEEEEC-CCCCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeC
Confidence 2 247999999 9999999999999988999999999999996 456666553
No 15
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.81 E-value=1.4e-19 Score=160.38 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=80.2
Q ss_pred CceEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeC----
Q 010608 386 VRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDL---- 461 (506)
Q Consensus 386 ~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDL---- 461 (506)
..+.|+++.++. ....|.|.. ..++|||+ ..|||+|+++.||++||.|.+... .+ +...|+|+||
T Consensus 9 ~~~~~lvv~~~~-~~~~~~l~~-~~~~IGR~-~~~di~l~d~~VSr~Ha~I~~~~~----~~----g~~~~~l~Dl~~~~ 77 (131)
T 3hx1_A 9 LQEHILIILDDA-GRREVLLTE-TFYTIGRS-PRADIRIKSQFVSRIHAVLVRKSS----DD----VQAAYRIIDGDEDG 77 (131)
T ss_dssp CCEEEEEEEETT-EEEEEEECS-SEEEEESS-TTSSEECCCSSSCTTCEEEEEC--------------CCEEEEESCTTS
T ss_pred CcceEEEEECCC-CcEEEEECC-CCEEECCC-CCCCEEECCCCcChhheEEEEEcc----CC----CceEEEEEECCCCC
Confidence 345667776443 355677864 56999998 679999999999999999998631 01 1235999999
Q ss_pred -CCCCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEEeec
Q 010608 462 -GSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHE 502 (506)
Q Consensus 462 -gSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl~e 502 (506)
+|+|||||||++|.. +.|.+||+|.||...+.|+.+..
T Consensus 78 ~~S~NGT~vNg~~i~~---~~L~~GD~I~iG~~~~~~~~~~~ 116 (131)
T 3hx1_A 78 QSSVNGLMINGKKVQE---HIIQTGDEIVMGPQVSVRYEYRR 116 (131)
T ss_dssp CCCSSCEEETTEEESE---EECCTTCEEECSTTCEEEEEEEC
T ss_pred CCCCCceEECCEEeEe---EECCCCCEEEECCEEEEEEEEec
Confidence 799999999999985 79999999999999886655543
No 16
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.81 E-value=1.8e-19 Score=151.39 Aligned_cols=92 Identities=23% Similarity=0.348 Sum_probs=76.9
Q ss_pred eEEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcc
Q 010608 388 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKT 467 (506)
Q Consensus 388 wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGT 467 (506)
+.|.+.. |. ...|.|.. ..++|||+ ..|||+|+++.||++||.|.+.. ..|||+||+|+|||
T Consensus 6 ~~l~~~~-g~--g~~~~l~~-~~~~IGR~-~~~di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl~S~nGt 67 (100)
T 3po8_A 6 VTLQLDD-GS--GRTYQLRE-GSNIIGRG-QDAQFRLPDTGVSRRHLEIRWDG-------------QVALLADLNSTNGT 67 (100)
T ss_dssp EEEEECS-SS--CCEEECCS-EEEEEESS-TTCSEECCCTTSCSSCEEEEECS-------------SCEEEEECSCSSCC
T ss_pred EEEEEEC-CC--CcEEEECC-CCEEEeCC-CCCCEECCCCCcChhhCEEEEeC-------------CEEEEEECCCCCCE
Confidence 4455543 43 45678865 56999998 68999999999999999999862 37999999999999
Q ss_pred eeCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010608 468 YLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 500 (506)
Q Consensus 468 fVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl 500 (506)
||||++|. .+.|.+||+|.||...+.|.+.
T Consensus 68 ~vng~~i~---~~~L~~gd~i~iG~~~~~~~~~ 97 (100)
T 3po8_A 68 TVNNAPVQ---EWQLADGDVIRLGHSEIIVRMH 97 (100)
T ss_dssp EETTEECS---EEECCTTCEEEETTEEEEEEEE
T ss_pred EECCEECc---eEECCCCCEEEECCEEEEEEEE
Confidence 99999997 4799999999999988777664
No 17
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.80 E-value=2.8e-19 Score=158.96 Aligned_cols=92 Identities=26% Similarity=0.291 Sum_probs=77.7
Q ss_pred CCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCC----cCccceEEEEecccccCCCCCCCCccceEEEe
Q 010608 385 SVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS----CSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMD 460 (506)
Q Consensus 385 ~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPS----VSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiD 460 (506)
...|.|... |... ..|.|.....++|||+ ..|||+|+++. ||++||.|.+.. .+.|||+|
T Consensus 7 ~~~w~l~~~--G~~~-~~~~l~~~~~~~IGR~-~~~di~l~~~~~~~~VSr~Ha~i~~~~------------~g~~~l~D 70 (138)
T 2pie_A 7 GRSWCLRRV--GMSA-GWLLLEDGCEVTVGRG-FGVTYQLVSKICPLMISRNHCVLKQNP------------EGQWTIMD 70 (138)
T ss_dssp CEEEEEEET--TCSS-CBEEECTTCCEEEESS-SSSSEECCCSSCTTSSCSSCEEEEECT------------TSCEEEEE
T ss_pred CccEEEEEe--CCCC-CEEEecCCCeEEECCC-CCCCEEeCCCCcCCCCChhHeEEEEcC------------CCcEEEEE
Confidence 345876543 4433 3577765567999998 68999999998 999999999842 23799999
Q ss_pred CCCCCcceeCCeecCCCCeeecCCCCEEEEcC
Q 010608 461 LGSTNKTYLNDNPIEPQRYYELFEKDTIKFGN 492 (506)
Q Consensus 461 LgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~ 492 (506)
|+|+|||||||++|.++.++.|.+||+|.||.
T Consensus 71 l~S~NGT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 71 NKSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp CSCSSCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CCCCCCeEECCEEcCCCCcEECCCCCEEEECC
Confidence 99999999999999999899999999999998
No 18
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.79 E-value=1e-19 Score=163.17 Aligned_cols=92 Identities=26% Similarity=0.308 Sum_probs=78.3
Q ss_pred CCceEEEEEecCceeeeeEEecccceeeecccccccceecCCCC----cCccceEEEEecccccCCCCCCCCccceEEEe
Q 010608 385 SVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS----CSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMD 460 (506)
Q Consensus 385 ~~~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPS----VSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiD 460 (506)
...|.|. ..|... ..+.|.....++|||+ ..|||+|+++. ||++||.|.+.. .+.|||+|
T Consensus 15 ~~~w~L~--~~G~~~-~~~~l~~~~~~~IGR~-~~~di~l~~~~~~~~VSr~Ha~i~~~~------------~g~~~l~D 78 (145)
T 2csw_A 15 GRSWCLR--RVGMSA-GWLLLEDGCEVTVGRG-FGVTYQLVSKICPLMISRNHCVLKQNP------------EGQWTIMD 78 (145)
T ss_dssp SEEEEEC--CTTCSC-CBEECCTTCCEEEESS-TTSSEECCCSSCGGGSCTTCEEEEECT------------TSCEEEEB
T ss_pred CccEEEE--EeCCCC-CeEEeCCCCcEEECCC-CCCCEEECCCCcCCCCChhHeEEEEcC------------CCeEEEEE
Confidence 4468877 335444 3567766677999998 68999999998 999999999852 23799999
Q ss_pred CCCCCcceeCCeecCCCCeeecCCCCEEEEcC
Q 010608 461 LGSTNKTYLNDNPIEPQRYYELFEKDTIKFGN 492 (506)
Q Consensus 461 LgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~ 492 (506)
|+|+|||||||++|.++.++.|.+||+|.||.
T Consensus 79 l~S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 79 NKSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp SSCSSCEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CCCCCCeEECCEECCCCccEECCCCCEEEECC
Confidence 99999999999999998899999999999998
No 19
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.79 E-value=1.8e-19 Score=164.27 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=84.0
Q ss_pred EEEEecCceeeeeEEeccc-ceeeecccccccceecCCCCcCccceEEEEecccccC--CCCCCCCccceEEEeCCCCCc
Q 010608 390 LYVFKAGEMLKEPLYIHRQ-SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQ--PDGMLSKEVRPYIMDLGSTNK 466 (506)
Q Consensus 390 L~VfKdGe~i~e~I~L~rk-s~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~--eDG~~~g~~r~yLiDLgSTNG 466 (506)
|.++. +......|.|... ..|+|||+ ..|||+|+++.||++||.|.+....... ......+...|||+|| |+||
T Consensus 8 L~p~~-~~~~~~~i~L~~~~~~~~IGR~-~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-StNG 84 (158)
T 1dmz_A 8 LKPLP-DSIIQESLEIQQGVNPFFIGRS-EDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNV 84 (158)
T ss_dssp EEECT-TSSCCCCEEETTSCSCEEEESS-TTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STTC
T ss_pred EEeCC-CCccceEEEEcCCCceEEECCC-CCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-CcCC
Confidence 44443 4444456777642 35999998 6899999999999999999997421000 0000111268999999 9999
Q ss_pred ceeCCeecCCCCeeecCCCCEEEE-----cCceEEEEEeecC
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKF-----GNSSREYVLLHEN 503 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkF-----G~StreYVLl~e~ 503 (506)
|||||++|.++.+++|.+||+|+| |...+.|.+....
T Consensus 85 T~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~~~ 126 (158)
T 1dmz_A 85 SYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEIND 126 (158)
T ss_dssp CEETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEEEECSC
T ss_pred eEECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEEEEEeCC
Confidence 999999999998999999999999 9999888887654
No 20
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.79 E-value=5.8e-19 Score=158.97 Aligned_cols=103 Identities=25% Similarity=0.361 Sum_probs=79.8
Q ss_pred Cce-EEEEEecCceeeeeEEecccceeeecccccccceecCCCC---------cCccceEEEEecccccCCCCCCCCccc
Q 010608 386 VRW-RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS---------CSKQHAVIQFRQVEKEQPDGMLSKEVR 455 (506)
Q Consensus 386 ~~w-rL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPS---------VSRqHAvIq~r~~ek~~eDG~~~g~~r 455 (506)
..| .|+++..+. ..|.|. ...++|||+ ..|||+|+++. ||++||.|.+... + .....
T Consensus 28 ~~w~~L~~~~~~~---~~i~L~-~~~~~IGR~-~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~------~--~~~~~ 94 (149)
T 1gxc_A 28 APWARLWALQDGF---ANLECV-NDNYWFGRD-KSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVG------P--KNSYI 94 (149)
T ss_dssp -CCEEEEECSTTC---CCEEEC-SSEEEEESS-TTCSEECCCGGGGGSSGGGGSCTTCEEEEEEEC------T--TSSEE
T ss_pred CeeEEEEEcCCCC---ceEEEC-CCCEEecCC-CCCCEEECCccccccccCCcCchhheEEEEECC------C--CceeE
Confidence 346 555554322 237775 467999998 68999999995 9999999998742 0 01247
Q ss_pred eEEEeCCCCCcceeCCeecCCCCeeecCCCCEEEEcCce-EEEEEeec
Q 010608 456 PYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS-REYVLLHE 502 (506)
Q Consensus 456 ~yLiDLgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~St-reYVLl~e 502 (506)
|||+|+ |+|||||||++|.++..+.|.+||+|.||... ..|+|+..
T Consensus 95 ~~i~D~-StNGT~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 95 AYIEDH-SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp EEEEEC-CSSCEEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred EEEEEC-CCCCeEECCEECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 999997 99999999999999999999999999999965 45666543
No 21
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.77 E-value=8.6e-19 Score=150.55 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=78.2
Q ss_pred EEEEEecCceeeeeEEecccceeeecccccccceecCC-CCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcc
Q 010608 389 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDH-PSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKT 467 (506)
Q Consensus 389 rL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLdd-PSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGT 467 (506)
+|+++. +......|.|. ...++|||+ ..|||+|++ +.||++||.|.+... .+.|||.| +|+|||
T Consensus 6 ~L~~~~-~~~~~~~~~l~-~~~~~iGR~-~~~di~l~~~~~vSr~Ha~i~~~~~-----------~~~~~l~D-~S~NGt 70 (116)
T 1lgp_A 6 RLLRLG-AEEGEPHVLLR-KREWTIGRR-RGCDLSFPSNKLVSGDHCRIVVDEK-----------SGQVTLED-TSTSGT 70 (116)
T ss_dssp EECCTT-CCSSSCCEEEC-SSEEEEESS-TTSSEECTTCTTSCTTCEEEEECTT-----------TCCEEEEE-CSSSCC
T ss_pred EEEEeC-CCCCccEEEEC-CCCEEECCC-CCCCEEeCCCCCCChhHeEEEEECC-----------CCeEEEEE-CCcCCc
Confidence 455554 32333457776 467999998 689999986 499999999998621 24799999 999999
Q ss_pred eeCCeecCCCCeeecCCCCEEEEcCc------eEEEEEee
Q 010608 468 YLNDNPIEPQRYYELFEKDTIKFGNS------SREYVLLH 501 (506)
Q Consensus 468 fVNGeRI~~~r~~eL~dGDvIkFG~S------treYVLl~ 501 (506)
||||++|.++.++.|.+||+|.||.. ...|+|..
T Consensus 71 ~vng~~l~~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~ 110 (116)
T 1lgp_A 71 VINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYES 110 (116)
T ss_dssp CCCCCCCCCSSCCCCCTTCEEEEECCSSCGGGCEEEECCC
T ss_pred EECCEEcCCCCcEECCCCCEEEEeccCCCCCceEEEEEEc
Confidence 99999999988899999999999986 35666654
No 22
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.76 E-value=6.7e-19 Score=164.62 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=79.1
Q ss_pred eeeEEeccc-ceeeecccccccceecCCCCcCccceEEEEecccccC--CCCCCCCccceEEEeCCCCCcceeCCeecCC
Q 010608 400 KEPLYIHRQ-SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQ--PDGMLSKEVRPYIMDLGSTNKTYLNDNPIEP 476 (506)
Q Consensus 400 ~e~I~L~rk-s~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~--eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~ 476 (506)
...|.|... ..|+|||+ ..|||+|+++.||++||.|.+....... ......+...|||+|| |+|||||||++|..
T Consensus 41 ~~~i~L~~~~~~~~IGR~-~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl-StNGT~VNg~ri~~ 118 (182)
T 1qu5_A 41 QESLEIQQGVNPFFIGRS-EDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQ 118 (182)
T ss_dssp CSCCCBTTCCSSEEESSS-TTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC-SSSCCEETTEECCS
T ss_pred ceEEEEcCCCceEEECCC-CCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC-CcCCeEECCEEcCC
Confidence 355677542 34999998 6899999999999999999997421000 0000011258999999 99999999999999
Q ss_pred CCeeecCCCCEEEE-----cCceEEEEEeecC
Q 010608 477 QRYYELFEKDTIKF-----GNSSREYVLLHEN 503 (506)
Q Consensus 477 ~r~~eL~dGDvIkF-----G~StreYVLl~e~ 503 (506)
+.+++|.+||+|.| |...+.|.+....
T Consensus 119 ~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~~~ 150 (182)
T 1qu5_A 119 GTKFLLQDGDEIKIIWDKNNKFVIGFKVEIND 150 (182)
T ss_dssp SEEEECCTTBCCEEEEEGGGTEEEECCEEESC
T ss_pred CcceEcCCCCEEEEEEcCCCCEEEEEEEEeCC
Confidence 88999999999999 9999888776644
No 23
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.75 E-value=2.5e-18 Score=158.23 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=70.3
Q ss_pred eeeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCCe
Q 010608 400 KEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRY 479 (506)
Q Consensus 400 ~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r~ 479 (506)
...|.|.. ..++|||+ ..|||+|+++.||++||+|.+.. ..|+|+||+|+|||||||++|. .
T Consensus 77 g~~~~L~~-~~~~IGR~-~~~dI~L~d~~VSr~HA~I~~~~-------------~~~~l~DlgStNGT~VNG~~i~---~ 138 (157)
T 3oun_A 77 GRTYQLRE-GSNIIGRG-QDAQFRLPDTGVSRRHLEIRWDG-------------QVALLADLNSTNGTTVNNAPVQ---E 138 (157)
T ss_dssp CCEEECCS-EEEEEESS-TTCSEECCCTTSCTTCEEEEECS-------------SCEEEEECSCSSCCEETTEECS---E
T ss_pred CeEEEECC-CcEEEEeC-CCCCEEeCCCCcChhHEEEEEEC-------------CEEEEEECCCCCCeEECCEECc---e
Confidence 45678865 56999998 68999999999999999999862 3799999999999999999997 4
Q ss_pred eecCCCCEEEEcCceEEE
Q 010608 480 YELFEKDTIKFGNSSREY 497 (506)
Q Consensus 480 ~eL~dGDvIkFG~StreY 497 (506)
++|.+||+|.||...+.|
T Consensus 139 ~~L~~GD~I~lG~~~l~f 156 (157)
T 3oun_A 139 WQLADGDVIRLGHSEIIV 156 (157)
T ss_dssp EECCTTCEEEETTEEEEE
T ss_pred EECCCCCEEEECCEEEEE
Confidence 699999999999977655
No 24
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.74 E-value=9e-18 Score=147.18 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=68.4
Q ss_pred ceeeecccccccceecCCC-CcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCCeeecCCCCE
Q 010608 409 SCYLFGRERRVADIPTDHP-SCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDT 487 (506)
Q Consensus 409 s~ylIGRdr~~cDIvLddP-SVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r~~eL~dGDv 487 (506)
..++|||+ ..|||+|+++ .||+.||.|.+.. .+.|||.|| |+|||||||++|.++.++.|.+||+
T Consensus 36 ~~~~IGR~-~~~di~l~~~~~vSr~Ha~i~~~~------------~g~~~l~Dl-S~NGT~vNg~~l~~~~~~~L~~Gd~ 101 (127)
T 1g6g_A 36 KVWTFGRN-PACDYHLGNISRLSNKHFQILLGE------------DGNLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDE 101 (127)
T ss_dssp EEEEEESS-TTSSEECCSCTTSCSSCEEEEECT------------TSCEEEEEC-CSSCCEETTEECCTTCCEECCTTCE
T ss_pred CCEEECCC-CCCCEEeCCCCCCChhHeEEEECC------------CCcEEEEEC-CcCCeEECCEEcCCCCeEEcCCCCE
Confidence 36999998 6799999998 5999999999852 237999999 9999999999999988999999999
Q ss_pred EEEcCce----EEEEEee
Q 010608 488 IKFGNSS----REYVLLH 501 (506)
Q Consensus 488 IkFG~St----reYVLl~ 501 (506)
|.||... ..|+|.+
T Consensus 102 I~lG~~~~~~~i~f~~~~ 119 (127)
T 1g6g_A 102 ITVGVGVESDILSLVIFI 119 (127)
T ss_dssp EEECTTSGGGCEEEEEEE
T ss_pred EEECCCccCceEEEEEEe
Confidence 9999864 3555554
No 25
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.73 E-value=1.2e-17 Score=145.04 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=72.7
Q ss_pred eEEEEEecCcee----eeeEEecccceeeeccc-ccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCC
Q 010608 388 WRLYVFKAGEML----KEPLYIHRQSCYLFGRE-RRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 462 (506)
Q Consensus 388 wrL~VfKdGe~i----~e~I~L~rks~ylIGRd-r~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLg 462 (506)
.+|.++..+... ...|.|.. ..++|||. ...|||+|+++.||++||.|.+.. ..|+|.||+
T Consensus 12 p~Lv~l~~d~~~s~~~~~~~~L~~-~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~~-------------~~~~l~dl~ 77 (120)
T 1wln_A 12 PYLVELSPDGSDSRDKPKLYRLQL-SVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMD-------------GVVTVTPRS 77 (120)
T ss_dssp CEEEEECSSSCCCSSCCCEEECCS-EEEECSSSCCSTTCCCCCCTTCCSSCEEEEESS-------------SCEEEEESC
T ss_pred CEEEEeCCChhhccCccEEEEECC-CCEEECCCCCCCCcEEECCCCCchhheEEEEcC-------------CEEEEEECC
Confidence 467776633222 44577754 56899973 268999999999999999998852 479999999
Q ss_pred CCCcceeCCeecCCCCeeecCCCCEEEEcCc
Q 010608 463 STNKTYLNDNPIEPQRYYELFEKDTIKFGNS 493 (506)
Q Consensus 463 STNGTfVNGeRI~~~r~~eL~dGDvIkFG~S 493 (506)
|+|||||||++|. ..+.|.+||+|.||..
T Consensus 78 S~ngt~vNg~~i~--~~~~L~~GD~I~iG~~ 106 (120)
T 1wln_A 78 MDAETYVDGQRIS--ETTMLQSGMRLQFGTS 106 (120)
T ss_dssp SSSCEEETSCBCS--SCEEECTTCEEEETTT
T ss_pred CCCCEEECCEEcC--CCEECCCCCEEEECCc
Confidence 9999999999998 4579999999999994
No 26
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.71 E-value=6e-17 Score=147.29 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=75.7
Q ss_pred EEEEEecCceeee-eEEecccceeeecccc--cccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCC
Q 010608 389 RLYVFKAGEMLKE-PLYIHRQSCYLFGRER--RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 465 (506)
Q Consensus 389 rL~VfKdGe~i~e-~I~L~rks~ylIGRdr--~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTN 465 (506)
+|.-+..+..... .+++.....++|||.. ..|||+|.++.||++||+|++... + ....++++|++|+|
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~------~---~~~~~~~~d~~S~n 110 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSR------G---GSEAVVTLEPCEGA 110 (154)
T ss_dssp EEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECT------T---SSSCEEEEEECTTC
T ss_pred eEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecC------C---CceeEEEEecCCCC
Confidence 5666654333222 2343355789999973 269999999999999999998742 1 12368999999999
Q ss_pred cceeCCeecCCCCeeecCCCCEEEEcCceEEEEEee
Q 010608 466 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 501 (506)
Q Consensus 466 GTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl~ 501 (506)
||||||++|. .++.|++||+|.||.+.+ |+|.+
T Consensus 111 gt~VNG~~i~--~~~~L~~GD~I~~G~~~~-Frf~~ 143 (154)
T 4ejq_A 111 DTYVNGKKVT--EPSILRSGNRIIMGKSHV-FRFNH 143 (154)
T ss_dssp CEEETTEECC--SCEECCTTCEEEETTTEE-EEEEC
T ss_pred ceEECCEEcC--CceECCCCCEEEECCcEE-EEEcC
Confidence 9999999996 357999999999998753 55544
No 27
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.69 E-value=4.6e-17 Score=164.71 Aligned_cols=86 Identities=22% Similarity=0.225 Sum_probs=74.3
Q ss_pred eeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCCee
Q 010608 401 EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYY 480 (506)
Q Consensus 401 e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r~~ 480 (506)
..|.|.. ..++|||+ ..|||+|+++.||++||.|.+.. +.|||.||+|+|||||||++|. .++
T Consensus 299 ~~~~l~~-~~~~iGR~-~~~di~l~~~~vSr~Ha~i~~~~-------------~~~~l~Dl~S~nGt~vng~~i~--~~~ 361 (388)
T 2ff4_A 299 RGYPLQA-AATRIGRL-HDNDIVLDSANVSRHHAVIVDTG-------------TNYVINDLRSSNGVHVQHERIR--SAV 361 (388)
T ss_dssp CEEECCS-SEEEEESS-TTSSEECCCTTSCTTCEEEEECS-------------SCEEEEECSCSSCCEETTEECS--SEE
T ss_pred cEEEECC-CCEEEecC-CCCeEEECCCccChhHeEEEEEC-------------CEEEEEECCCCCCeEECCEECC--Cce
Confidence 4577865 57999998 68999999999999999999852 4799999999999999999995 478
Q ss_pred ecCCCCEEEEcCceEEEEEeecC
Q 010608 481 ELFEKDTIKFGNSSREYVLLHEN 503 (506)
Q Consensus 481 eL~dGDvIkFG~StreYVLl~e~ 503 (506)
.|.+||+|+||...+.|.+..+.
T Consensus 362 ~L~~gd~i~~G~~~~~~~~~~~~ 384 (388)
T 2ff4_A 362 TLNDGDHIRICDHEFTFQISAGT 384 (388)
T ss_dssp EECTTCEEEETTEEEEEECSCCC
T ss_pred ECCCCCEEEECCEEEEEEeCCCC
Confidence 99999999999988777665443
No 28
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.67 E-value=5.9e-17 Score=163.65 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=82.5
Q ss_pred eEEEEEecCceeeeeEEecccceeeeccccc--ccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCC
Q 010608 388 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERR--VADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 465 (506)
Q Consensus 388 wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~--~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTN 465 (506)
|.|..-- +...+..+.|.... |+|||... .++|+++|++|||+||+|++..+...+ |.......++|+||+|+|
T Consensus 2 WiL~~~~-d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~d--g~~~~~~~l~I~DLgSkn 77 (325)
T 3huf_A 2 WIIEAEG-DILKGKSRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKD--YFTGGPCEFEVKDLDTKF 77 (325)
T ss_dssp EEEEEST-TTTTTCCEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHH--HHHCCCCCEEEEECSCSS
T ss_pred cEEeccC-ccCCCeEEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEecccccc--cccCCcceEEEEECCCCC
Confidence 8787631 12234567786655 99999732 134799999999999999997532211 111223579999999999
Q ss_pred cceeCCeecCCCCeeecCCCCEEEEcCceEEEEEeecC
Q 010608 466 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHEN 503 (506)
Q Consensus 466 GTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl~e~ 503 (506)
||||||++|....+..+.+||.|+||.....|.|.+.+
T Consensus 78 GTfVNGerI~~~~~~L~~dgd~I~fG~~~~~fRl~W~P 115 (325)
T 3huf_A 78 GTKVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRS 115 (325)
T ss_dssp CEEETTEECCTTCEEECSSEEEEEETTCSSCEEEEECC
T ss_pred CEEECCEECCCceeeecCCCCEEEecCCcceEEEEEee
Confidence 99999999987766555689999999988888887765
No 29
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.61 E-value=2.3e-15 Score=133.42 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=72.7
Q ss_pred eEEEEEecCceeee--eEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCC
Q 010608 388 WRLYVFKAGEMLKE--PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 465 (506)
Q Consensus 388 wrL~VfKdGe~i~e--~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTN 465 (506)
.+|+.+.++....+ .|+|.. .++|||. ..|||+|.++.||++||+|.+.. .+.|+|+||+ +|
T Consensus 27 PhLvnLn~Dp~~s~~l~y~L~~--~t~IGR~-~~~DI~L~~~~Vs~~Ha~I~~~~------------~g~~~l~dl~-~n 90 (124)
T 3fm8_A 27 CFLVNLNADPALNELLVYYLKE--HTLIGSA-NSQDIQLCGMGILPEHCIIDITS------------EGQVMLTPQK-NT 90 (124)
T ss_dssp CEEEETTCCTTSSCCCEEECCS--EEEEESS-TTCSEECCSTTCCSSCEEEEECT------------TSCEEEEECT-TC
T ss_pred cEEEEeCCCCccCceEEEECCC--CeEECCC-CCCCEEECCCCeecceEEEEECC------------CCeEEEEECC-CC
Confidence 36777764433322 244543 4899998 68999999999999999998842 2479999995 89
Q ss_pred cceeCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010608 466 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 500 (506)
Q Consensus 466 GTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl 500 (506)
||||||++|. .++.|.+||+|.||...+ |.|.
T Consensus 91 gt~VNG~~V~--~~~~L~~GD~I~lG~~~~-FrFn 122 (124)
T 3fm8_A 91 RTFVNGSSVS--SPIQLHHGDRILWGNNHF-FRLN 122 (124)
T ss_dssp CEEETTEECC--SCEEECTTCEEEETTTEE-EEEE
T ss_pred CEEECCEEcC--CcEECCCCCEEEECCCeE-EEEE
Confidence 9999999998 357999999999997653 4443
No 30
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.39 E-value=1.2e-12 Score=131.55 Aligned_cols=93 Identities=27% Similarity=0.341 Sum_probs=74.2
Q ss_pred EEEEEecCceeeeeEEecccceeeecccccccceecCCCCc---------CccceEEEEecccccCCCCCCCCccceEEE
Q 010608 389 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSC---------SKQHAVIQFRQVEKEQPDGMLSKEVRPYIM 459 (506)
Q Consensus 389 rL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSV---------SRqHAvIq~r~~ek~~eDG~~~g~~r~yLi 459 (506)
.|+++..|.. .+.|.. ..|+|||+ ..|||+|++|.| |+.||.|..... . .+...|||+
T Consensus 12 ~l~~~~~~~~---~~~l~~-~~~~iGR~-~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~----~----~~~~~~~i~ 78 (419)
T 3i6u_A 12 RLWALQDGFA---NLECVN-DNYWFGRD-KSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVG----P----KNSYIAYIE 78 (419)
T ss_dssp EEEECSSSSC---CEEECS-SEEEEESS-TTSSEETTCTTGGGCSGGGGSCTTCEEEECCEE----T----TTEECCEEE
T ss_pred EeeecCCCCC---ceEecC-CCEEecCC-CccCEEECCcccccccccccccccceEEEEEcC----C----CCceEEEEE
Confidence 5655654433 467754 67999998 789999999986 999999966421 1 123359999
Q ss_pred eCCCCCcceeCCeecCCCCeeecCCCCEEEEcCceE
Q 010608 460 DLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSR 495 (506)
Q Consensus 460 DLgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~Str 495 (506)
| .|+|||||||..|..+....|.+||.|+||.+..
T Consensus 79 D-~S~nGt~vn~~~~~~~~~~~l~~~d~i~~~~~~~ 113 (419)
T 3i6u_A 79 D-HSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRN 113 (419)
T ss_dssp E-CCSSCEEETTEECCTTCEEECCTTEEEEESSTTC
T ss_pred E-CCcCCceECcccccCCCcccCCCCCEeeeecccc
Confidence 9 6999999999999999999999999999998764
No 31
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.39 E-value=1.3e-12 Score=113.11 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=67.6
Q ss_pred eEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcc-eeCCeecCCCCee
Q 010608 402 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKT-YLNDNPIEPQRYY 480 (506)
Q Consensus 402 ~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGT-fVNGeRI~~~r~~ 480 (506)
++.|+....|.|||+ +.|+++|++|+||+.||.|.... ...||. . |+||| ||||+++ ..+
T Consensus 14 ~v~l~~~~~~rIGR~-~~~~l~LddpsVs~~HAti~~~~-------------~G~~~l-~-S~nGtVFVNGqrv---~~~ 74 (102)
T 3uv0_A 14 AILLKADTIYRIGRQ-KGLEISIADESMELAHATACILR-------------RGVVRL-A-ALVGKIFVNDQEE---TVV 74 (102)
T ss_dssp CEECCTTCCEEEESS-TTSTEECCCTTSCTTCEEEEEEE-------------TTEEEE-E-ESSSCEEETTEEE---SEE
T ss_pred cEEeecCcEEEEcCC-CCCcEEECCcccccceEEEEecC-------------CceEEE-E-eccCcEEECCEEe---eeE
Confidence 467777888999998 79999999999999999998863 245663 3 99995 9999999 367
Q ss_pred ecCCCCE------EEEcCceEEEEEe
Q 010608 481 ELFEKDT------IKFGNSSREYVLL 500 (506)
Q Consensus 481 eL~dGDv------IkFG~StreYVLl 500 (506)
.|.+||. |.||+..-.+.++
T Consensus 75 ~I~~gDtI~g~v~lrFGnvea~l~~~ 100 (102)
T 3uv0_A 75 DIGMENAVAGKVKLRFGNVEARLEFG 100 (102)
T ss_dssp EECGGGCBTTEEEEEETTEEEEEEEC
T ss_pred EccCCcccccEEEEEecCEEEEEEec
Confidence 9999999 9999988766654
No 32
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.36 E-value=2.6e-12 Score=114.54 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=81.9
Q ss_pred ceEEEEEecCceeeeeEEecccceeeeccccc-ccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCC
Q 010608 387 RWRLYVFKAGEMLKEPLYIHRQSCYLFGRERR-VADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 465 (506)
Q Consensus 387 ~wrL~VfKdGe~i~e~I~L~rks~ylIGRdr~-~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTN 465 (506)
.|.|.|+. |...+..+.|.. ..|+||.+ + .|||+|.|+.||+.||+|++.. ..|+|. +|+|
T Consensus 4 ~~klrvls-G~~~G~~l~L~~-~~~~IGs~-~~~~DLvL~D~~Vs~~H~~L~~~~-------------~g~~L~--~s~n 65 (123)
T 4a0e_A 4 SWVCRFYQ-GKHRGVEVELPH-GRCVFGSD-PLQSDIVLSDSEIAPVHLVLMVDE-------------EGIRLT--DSAE 65 (123)
T ss_dssp CEEEEECS-GGGTTCEEEECS-EEEEEESC-TTTCSEECCCTTSCSSCEEEEEET-------------TEEEEE--EESS
T ss_pred eEEEEEec-CCCCCcEEEcCC-CcEEECCC-CCCCCEEEeCCCccceeEEEEECC-------------CeEEEE--eccC
Confidence 59999998 888777888865 67999998 6 8999999999999999999973 378887 7999
Q ss_pred cceeCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010608 466 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 500 (506)
Q Consensus 466 GTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl 500 (506)
||||||+.|..+. .|..|++|.+|...+.|.-.
T Consensus 66 gt~vdG~~v~~~~--~L~~g~~l~lG~~~l~~~~~ 98 (123)
T 4a0e_A 66 PLLQEGLPVPLGT--LLRAGSCLEVGFLLWTFVAV 98 (123)
T ss_dssp CCEETTEECCTTC--BCCTTSCEEETTEEEEEEET
T ss_pred CEEECCEEccccc--ccCCCCEEEEccEEEEEEcC
Confidence 9999999998764 79999999999998776544
No 33
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.22 E-value=6.6e-11 Score=102.32 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=74.1
Q ss_pred eeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCCee
Q 010608 401 EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYY 480 (506)
Q Consensus 401 e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r~~ 480 (506)
..|.|.....++|||+ +.|.| .+..||++||.|.++.. .+.+.|.++ ++|+|||||..|.++..+
T Consensus 15 ~~I~L~~g~~v~iGR~-p~t~I--~DkrcSR~h~~L~~~~~-----------~g~v~vk~l-g~Np~~vng~~l~k~~~~ 79 (102)
T 3kt9_A 15 QRIRLPHLEAVVIGRG-PETKI--TDKKCSRQQVQLKAECN-----------KGYVKVKQV-GVNPTSIDSVVIGKDQEV 79 (102)
T ss_dssp CEEECCBTCEEEECSS-TTTCC--CCTTSCSSCEEEEEETT-----------TTEEEEEEC-SSSCCEETTEECCBTCEE
T ss_pred CcEEcCCCCcEEeccC-Ccccc--ccCcccCcceEEEEecC-----------CCEEEEEEC-cCCCCeECCEEcCCCCeE
Confidence 3577876677889998 56655 68999999999999742 246799999 599999999999999999
Q ss_pred ecCCCCEEEEcCceEEEEEeec
Q 010608 481 ELFEKDTIKFGNSSREYVLLHE 502 (506)
Q Consensus 481 eL~dGDvIkFG~StreYVLl~e 502 (506)
.|.+||+|.|-...+.|.|.+.
T Consensus 80 ~L~~GD~l~Ll~~~~~~~v~f~ 101 (102)
T 3kt9_A 80 KLQPGQVLHMVNELYPYIVEFE 101 (102)
T ss_dssp EECTTCCEEEETTEEEEEEEEE
T ss_pred EeCCCCEEEEccCCceEEEEec
Confidence 9999999999999988888774
No 34
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.15 E-value=2.9e-10 Score=106.60 Aligned_cols=101 Identities=22% Similarity=0.257 Sum_probs=72.3
Q ss_pred eEEEEEecCceeee--eEEecccceeeecccc--cccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCC
Q 010608 388 WRLYVFKAGEMLKE--PLYIHRQSCYLFGRER--RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGS 463 (506)
Q Consensus 388 wrL~VfKdGe~i~e--~I~L~rks~ylIGRdr--~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgS 463 (506)
.+|+-+..+..... .|+|. ...++|||.. ..|||+|..+.|+.+||+|..... + ...+.++|..+ +
T Consensus 69 PhLvnLn~Dp~ls~~l~y~L~-~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~------~--~~~~~vtl~p~-~ 138 (184)
T 4egx_A 69 PHLVNLNEDPLMSECLLYYIK-DGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSR------G--GSEAVVTLEPC-E 138 (184)
T ss_dssp CEEEECCCCTTCSSCSEEECC-SEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECC------S--SCSCEEEEEEC-T
T ss_pred ceEEeccCCcccCceEEEEEC-CCcCcCCCCCcCCCCeEEECccccccccEEEEEcCC------C--CceEEEEEeeC-C
Confidence 35666654332222 24454 4678999963 369999999999999999988631 1 11235677776 6
Q ss_pred CCcceeCCeecCCCCeeecCCCCEEEEcCceEEEEEee
Q 010608 464 TNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 501 (506)
Q Consensus 464 TNGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVLl~ 501 (506)
.+.|||||.+|. .++.|++||.|.||.+.+ |.|.+
T Consensus 139 ~a~t~VNG~~I~--~~~~L~~GDrI~lG~~h~-Frfn~ 173 (184)
T 4egx_A 139 GADTYVNGKKVT--EPSILRSGNRIIMGKSHV-FRFNH 173 (184)
T ss_dssp TCCEEETTEECC--SCEECCTTCEEEETTTEE-EEEEC
T ss_pred CCeEEEcCEEcc--ccEEcCCCCEEEECCCCE-EEECC
Confidence 788999999997 468999999999998753 55554
No 35
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.99 E-value=8.9e-10 Score=106.48 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=61.8
Q ss_pred eeEEecccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcc-eeCCeecCCCCe
Q 010608 401 EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKT-YLNDNPIEPQRY 479 (506)
Q Consensus 401 e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGT-fVNGeRI~~~r~ 479 (506)
..+.+... .++||++ +.|||+|+++ + ||.|.... . . ..+.|+|.||+|+||| ||||++|...
T Consensus 85 ~~y~~~~~-~itIG~~-~~~dI~l~~~-~---~~~~~~~~-~----~----~~~~~~l~~l~s~ngtvyvNg~~i~~~-- 147 (238)
T 1wv3_A 85 FAYPSIQD-TMTIGPN-AYDDMVIQSL-M---NAIIIKDF-Q----S----IQESQYVRIVHDKNTDVYINYELQEQL-- 147 (238)
T ss_dssp EECCSSCS-EEEEESS-TTSSEECTTC-S---SCEEEECG-G----G----HHHHCEEEEECCTTCCEEETTEECCSS--
T ss_pred EEEecCCc-eEEEeCC-CCCeEEeCCC-e---eEEEEecc-c----C----cCCcEEEEEccCCCCCEEECCEEeccc--
Confidence 34555555 8999998 7999999998 4 57665541 0 0 0037999999999997 9999999754
Q ss_pred eecC-CCCEEEEcCceEEE
Q 010608 480 YELF-EKDTIKFGNSSREY 497 (506)
Q Consensus 480 ~eL~-dGDvIkFG~StreY 497 (506)
..|. .||+|.||...+.|
T Consensus 148 ~~L~~~GD~I~ig~~~~~~ 166 (238)
T 1wv3_A 148 TNKAYIGDHIYVEGIWLEV 166 (238)
T ss_dssp EEEEETTCEEEETTEEEEE
T ss_pred eeccCCcCEEEECCEEEEE
Confidence 4799 99999999988665
No 36
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.97 E-value=2e-09 Score=94.34 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=68.0
Q ss_pred eEEec-ccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCcceeCCeecCCCCee
Q 010608 402 PLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYY 480 (506)
Q Consensus 402 ~I~L~-rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNGTfVNGeRI~~~r~~ 480 (506)
.|.|. ....++|||++ +..|.|..||++|+.|.++.. ...+.|.+| ++|+|||||..|.++..+
T Consensus 21 ~I~Lp~~~g~~viGR~p---~t~I~DkrcSR~hv~L~ad~~-----------~~~v~vk~l-G~Np~~vng~~l~k~~~~ 85 (110)
T 2brf_A 21 PIFLPSDGQALVLGRGP---LTQVTDRKCSRTQVELVADPE-----------TRTVAVKQL-GVNPSTTGTQELKPGLEG 85 (110)
T ss_dssp CEECCSTTCCEEECSBT---TTTBCCTTSCSSCEEEEEETT-----------TTEEEEEEC-SSSCCEEC-CBCCTTCEE
T ss_pred cEEeccCCCCEEEcCCC---CcccccccceeeeEEEEEecC-----------CCEEEEEEc-ccCCcEECCEEcCCCCEE
Confidence 57773 33569999983 445789999999999998753 347888999 789999999999999999
Q ss_pred ecCCCCEEEEcCceEEEEEeec
Q 010608 481 ELFEKDTIKFGNSSREYVLLHE 502 (506)
Q Consensus 481 eL~dGDvIkFG~StreYVLl~e 502 (506)
.|++||+|.|=...+.|.+.++
T Consensus 86 ~L~~GD~leLl~g~y~~~v~f~ 107 (110)
T 2brf_A 86 SLGVGDTLYLVNGLHPLTLRWE 107 (110)
T ss_dssp EEETTCEEEEETTEEEEEEEEE
T ss_pred EecCCCEEEEccCCeEEEEEec
Confidence 9999999998555555555543
No 37
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.91 E-value=4e-09 Score=96.25 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=72.5
Q ss_pred eEEEEEecCceeeeeEEec-ccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCc
Q 010608 388 WRLYVFKAGEMLKEPLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNK 466 (506)
Q Consensus 388 wrL~VfKdGe~i~e~I~L~-rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNG 466 (506)
+.|.... |.. ..|.|. ....++|||++ ...|.|..||++|+.|.++.. ...+.|.+| ++|+
T Consensus 10 c~L~p~d-~~~--~~I~Lp~~~g~vvIGRgP---et~ItDkRcSR~qv~L~ad~~-----------~g~V~Vk~l-G~NP 71 (143)
T 1yj5_C 10 LWLQSPT-GGP--PPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPE-----------SRTVAVKQL-GVNP 71 (143)
T ss_dssp EEEECCT-TSC--CCEECCTTTCEEEECSBT---TTTBCCSSSCSSCEEEEEETT-----------TTEEEEEEC-SSSC
T ss_pred EEEEecC-CCC--CcEEeccCCCCEEEcCCC---ccccccccccceeEEEEEecC-----------CCeEEEEEc-ccCC
Confidence 3455444 332 257773 33679999983 556789999999999999753 346778999 6799
Q ss_pred ceeCCeecCCCCeeecCCCCEEEE--cCceEEEEEe
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKF--GNSSREYVLL 500 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkF--G~StreYVLl 500 (506)
|||||..|.++..+.|.+||+|.| |...+.|+|+
T Consensus 72 ~~vng~~L~k~~~~~L~~GD~LeLl~g~y~f~V~f~ 107 (143)
T 1yj5_C 72 STVGVHELKPGLSGSLSLGDVLYLVNGLYPLTLRWE 107 (143)
T ss_dssp CEETTEECCTTCEEEECTTCEEESSSSCSEEEEEEE
T ss_pred cEECCEEecCCCEEEecCCCEEEEecCCceEEEEec
Confidence 999999999999999999999995 5556555553
No 38
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.84 E-value=2.9e-09 Score=94.51 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=71.3
Q ss_pred eEEEEEecCceeeeeEEec-ccceeeecccccccceecCCCCcCccceEEEEecccccCCCCCCCCccceEEEeCCCCCc
Q 010608 388 WRLYVFKAGEMLKEPLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNK 466 (506)
Q Consensus 388 wrL~VfKdGe~i~e~I~L~-rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r~~ek~~eDG~~~g~~r~yLiDLgSTNG 466 (506)
+.|....++ . ..|.|. ....++|||.+ ...|.|..||++|+.|.++.. ...+.|.+| ++|+
T Consensus 17 c~L~~~~~~-~--~~I~Lp~~~g~~viGRgp---~t~I~DkrcSR~qv~L~ad~~-----------~~~v~vk~l-G~NP 78 (119)
T 1ujx_A 17 LWLQSPTGG-P--PPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPE-----------SRTVAVKQL-GVNP 78 (119)
T ss_dssp EEEECCSSS-C--CCCCCCTTSCCEEESBBT---TTTBCCTTSCTTSEEEEEETT-----------TTEEEEEEC-SSSC
T ss_pred EEEEeCCCC-C--CcEEeccCCCCEEEcCCC---CcccccccccceeEEEEEecC-----------CCEEEEEEc-ccCC
Confidence 445555533 2 245663 23569999983 455789999999999999753 347888999 6799
Q ss_pred ceeCCeecCCCCeeecCCCCEEEE--cCceEEEEEe
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKF--GNSSREYVLL 500 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkF--G~StreYVLl 500 (506)
|||||..|.++..++|.+||+|.| |...++|+|.
T Consensus 79 ~~vng~~l~k~~~~~L~~GD~l~Ll~g~y~~~v~f~ 114 (119)
T 1ujx_A 79 STVGVQELKPGLSGSLSLGDVLYLVNGLYPLTLRWS 114 (119)
T ss_dssp CBSSSSBCCTTCEEEEETTCCCBCBTTBSCCEEEEC
T ss_pred cEECCEEecCCCEEEecCCCEEEEecCCeEEEEEec
Confidence 999999999999999999999985 5555555443
No 39
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=68.58 E-value=8.7 Score=36.82 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=30.9
Q ss_pred EEEEEecCceeeeeEEecccceeeecccccccceecCCCCcCccceEEEEe
Q 010608 389 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFR 439 (506)
Q Consensus 389 rL~VfKdGe~i~e~I~L~rks~ylIGRdr~~cDIvLddPSVSRqHAvIq~r 439 (506)
.|++|- +... ..+.|.....|+||.. ..|+|.|.++ ..|+.|.+.
T Consensus 3 ~l~i~y-~~~~-~~~~L~~~~~~tiG~~-~~~~itl~~~---~~~i~l~~~ 47 (238)
T 1wv3_A 3 KLIIKY-NKQL-KMLNLRDGKTYTISED-ERADITLKSL---GEVIHLEQN 47 (238)
T ss_dssp EEEEEE-TTEE-EEEECCTTCCEEEESC-TTSSEECTTC---CCCEEEEEC
T ss_pred EEEEEE-CCEE-EEEecCCCcEEEECCC-ccceEEecCC---CccEEEEEc
Confidence 366665 3333 3466754568999998 7999999877 556666664
No 40
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=52.29 E-value=14 Score=29.78 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=23.3
Q ss_pred CcceeCCeecCCCCeeecCCCCEEEEcCceEEEEE
Q 010608 465 NKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL 499 (506)
Q Consensus 465 NGTfVNGeRI~~~r~~eL~dGDvIkFG~StreYVL 499 (506)
...+|||+.+.++ +.|..||+|.|-.....|++
T Consensus 26 G~V~VNg~~~~~~--~~v~~gd~I~v~~~~~~~~~ 58 (92)
T 2k6p_A 26 GAVWLNGSCAKAS--KEVKAGDTISLHYLKGIEEY 58 (92)
T ss_dssp TCCEETTEECCTT--CBCCTTCEEEECCSSCCEEE
T ss_pred CcEEECCEEcCCC--CCcCCCCEEEEEeCCceEEE
Confidence 4588999987543 57899999999654433433
No 41
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=47.72 E-value=17 Score=32.00 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=21.9
Q ss_pred CcceeCCeecCCCCeeecCCCCEEEEcCceEEE
Q 010608 465 NKTYLNDNPIEPQRYYELFEKDTIKFGNSSREY 497 (506)
Q Consensus 465 NGTfVNGeRI~~~r~~eL~dGDvIkFG~StreY 497 (506)
..++|||+.+.++ +.|..||+|.|-.....|
T Consensus 34 G~V~VNG~~vk~s--~~V~~GD~I~I~~~~~~~ 64 (133)
T 1dm9_A 34 GKVHYNGQRSKPS--KIVELNATLTLRQGNDER 64 (133)
T ss_dssp TCEEETTEECCTT--CBCCTTCEEEEEETTEEE
T ss_pred CcEEECCEEcCCC--CEeCCCCEEEEEeCCcee
Confidence 4588999987544 578999999885443333
No 42
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=40.49 E-value=9.9 Score=30.71 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=20.8
Q ss_pred cceeCCeecCCCCe--eecCCCCEEEE
Q 010608 466 KTYLNDNPIEPQRY--YELFEKDTIKF 490 (506)
Q Consensus 466 GTfVNGeRI~~~r~--~eL~dGDvIkF 490 (506)
-+.|||+-|+...+ +.|++||.|.|
T Consensus 36 AVavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEE
Confidence 46689998888766 68999999987
No 43
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=40.08 E-value=12 Score=28.41 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=16.9
Q ss_pred ceeCCeecCCC--CeeecCCCCEEEE
Q 010608 467 TYLNDNPIEPQ--RYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~~--r~~eL~dGDvIkF 490 (506)
..|||+-|... ..+.|++||.|.|
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEE
Confidence 45677766654 2257999999987
No 44
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=39.67 E-value=11 Score=32.47 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.5
Q ss_pred ceeCCeecC--CCCeeecCCCCEEEE
Q 010608 467 TYLNDNPIE--PQRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~--~~r~~eL~dGDvIkF 490 (506)
++|||.-+. .+..++|++||+|.|
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 678998774 456679999999999
No 45
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=38.18 E-value=19 Score=28.40 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=23.0
Q ss_pred CcceeCCeecCCCCeeecCCCCEEEEcCceEE
Q 010608 465 NKTYLNDNPIEPQRYYELFEKDTIKFGNSSRE 496 (506)
Q Consensus 465 NGTfVNGeRI~~~r~~eL~dGDvIkFG~Stre 496 (506)
...+|||+.+... .+.|..||+|+|+.....
T Consensus 46 G~V~VNG~~v~~~-~~~v~~gd~I~v~~~~~~ 76 (79)
T 1p9k_A 46 GQVKVDGAVETRK-RCKIVAGQTVSFAGHSVQ 76 (79)
T ss_dssp HHHEETTBCCCCS-SCCCCSSEEEEETTEEEE
T ss_pred CEEEECCEEecCC-CCCCCCCCEEEECCEEEE
Confidence 4678999987432 346889999999877643
No 46
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=37.99 E-value=8.4 Score=30.71 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=18.9
Q ss_pred cceeCCeecCCCCe--eecCCCCEEEE
Q 010608 466 KTYLNDNPIEPQRY--YELFEKDTIKF 490 (506)
Q Consensus 466 GTfVNGeRI~~~r~--~eL~dGDvIkF 490 (506)
-+.|||+-|+...+ +.|++||.|.|
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEE
Confidence 35678887776543 68999999987
No 47
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=36.95 E-value=15 Score=30.42 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=17.9
Q ss_pred ceeCCeecCCCCe--eecCCCCEEEE
Q 010608 467 TYLNDNPIEPQRY--YELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~~r~--~eL~dGDvIkF 490 (506)
+.|||+-|+...+ +.|++||.|.|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEE
Confidence 4577777776433 58999999987
No 48
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=36.47 E-value=58 Score=33.09 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCCCcceeCCeecCCCCeeecCCCCEEEEcCc---eEEEEEe
Q 010608 462 GSTNKTYLNDNPIEPQRYYELFEKDTIKFGNS---SREYVLL 500 (506)
Q Consensus 462 gSTNGTfVNGeRI~~~r~~eL~dGDvIkFG~S---treYVLl 500 (506)
|-.-...|||+.|..+..+.|+.||+|+||.. .+.|+-+
T Consensus 78 GA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAV 119 (318)
T 3mml_A 78 GADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAV 119 (318)
T ss_dssp ESCCCCEETTEECCTTSCEEECTTCEEECCCCSSCSEEEEEE
T ss_pred CCCCcceECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEEE
Confidence 44456779999999999999999999999974 4567543
No 49
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=35.01 E-value=25 Score=27.10 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.5
Q ss_pred ceeCCeecCCCCeeecCCCCEEEE
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkF 490 (506)
..|||+.+... +.|++||.|.|
T Consensus 49 v~vNg~~v~~~--~~L~~gD~V~i 70 (77)
T 2q5w_D 49 VAVNEEFVQKS--DFIQPNDTVAL 70 (77)
T ss_dssp EEETTEEECTT--SEECTTCEEEE
T ss_pred EEECCEECCCC--CCcCCCCEEEE
Confidence 55677766643 58999999987
No 50
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=34.89 E-value=12 Score=32.33 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=18.8
Q ss_pred ceeCCeecC--CCCeeecCCCCEEEE
Q 010608 467 TYLNDNPIE--PQRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~--~~r~~eL~dGDvIkF 490 (506)
+||||.-|. .+.-++|++||.|.|
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEE
Confidence 678888653 355679999999998
No 51
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=34.08 E-value=25 Score=27.91 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=17.6
Q ss_pred cceeCCeecCCCCeeecCCCCEEEE
Q 010608 466 KTYLNDNPIEPQRYYELFEKDTIKF 490 (506)
Q Consensus 466 GTfVNGeRI~~~r~~eL~dGDvIkF 490 (506)
-.+|||+.+... +.|.+||.|.|
T Consensus 60 ~v~VN~~~v~~~--~~l~~gDeV~i 82 (89)
T 3po0_A 60 NVLRNGEAAALG--EATAAGDELAL 82 (89)
T ss_dssp EEEETTEECCTT--SBCCTTCEEEE
T ss_pred EEEECCEECCCC--cccCCCCEEEE
Confidence 456788777653 58999999987
No 52
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=31.28 E-value=17 Score=30.72 Aligned_cols=29 Identities=41% Similarity=0.369 Sum_probs=21.8
Q ss_pred eCCCCCcceeCCeecCCCCeeecCCCCEEEEc
Q 010608 460 DLGSTNKTYLNDNPIEPQRYYELFEKDTIKFG 491 (506)
Q Consensus 460 DLgSTNGTfVNGeRI~~~r~~eL~dGDvIkFG 491 (506)
|| +.+-..|||+.+... +.|++||.|.|=
T Consensus 55 dl-~~~~V~Vng~~v~~d--~~L~dGDRVEIy 83 (97)
T 2hj1_A 55 DL-STNKIGIFSRPIKLT--DVLKEGDRIEIY 83 (97)
T ss_dssp CT-TTSEEEEEECSCCTT--CBCCTTCEEEEC
T ss_pred cc-cccEEEEcCEECCCC--ccCCCCCEEEEE
Confidence 55 456678888888743 579999999873
No 53
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=30.96 E-value=25 Score=28.51 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=18.6
Q ss_pred cceeCCeecCCCCeeecCCCCEEEEc
Q 010608 466 KTYLNDNPIEPQRYYELFEKDTIKFG 491 (506)
Q Consensus 466 GTfVNGeRI~~~r~~eL~dGDvIkFG 491 (506)
|..|||+.+.-. ++|.+||+|.|=
T Consensus 43 ~AkVNG~~v~L~--~~L~~gd~VeIi 66 (78)
T 3hvz_A 43 GAKVDGRIVPID--YKVKTGEIIDVL 66 (78)
T ss_dssp EEEETTEEECTT--CBCCTTCBEEEE
T ss_pred EEEECCEEcCCC--cccCCCCEEEEE
Confidence 346788888764 589999999874
No 54
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=29.98 E-value=26 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=17.2
Q ss_pred ceeCCeecCC--CCeeecCCCCEEEE
Q 010608 467 TYLNDNPIEP--QRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~--~r~~eL~dGDvIkF 490 (506)
.+|||+-|.. +..+.|++||.|.|
T Consensus 58 v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 58 ILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCCCCCCEEEE
Confidence 5677776652 23458999999987
No 55
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=29.76 E-value=35 Score=26.39 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.0
Q ss_pred ceeCCeecCCCCeeecCCCCEEEE
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkF 490 (506)
.+|||+.+.. ...|++||.|.|
T Consensus 53 v~vN~~~v~~--~~~l~~gD~V~i 74 (81)
T 1fm0_D 53 AAVNQTLVSF--DHPLTDGDEVAF 74 (81)
T ss_dssp EEETTEECCT--TCBCCTTCEEEE
T ss_pred EEECCEECCC--CCCCCCCCEEEE
Confidence 6677777753 358999999987
No 56
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=29.21 E-value=29 Score=26.99 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=14.8
Q ss_pred ceeCCeecCCCCeeecCCCCEEEE
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkF 490 (506)
.+|||+-|.. ..+.|++||.|.|
T Consensus 45 vavN~~~v~~-~~~~l~~gDeV~i 67 (74)
T 3rpf_C 45 IALNDHLIDN-LNTPLKDGDVISL 67 (74)
T ss_dssp EEESSSEECC-TTCCCCTTCEEEE
T ss_pred EEECCEEcCC-CCcCCCCCCEEEE
Confidence 3445554332 3458999999987
No 57
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=29.13 E-value=28 Score=27.94 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=16.8
Q ss_pred ceeCCeecCC--CCeeecCCCCEEEE
Q 010608 467 TYLNDNPIEP--QRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~--~r~~eL~dGDvIkF 490 (506)
.+|||+-|.. +..+.|.+||.|.|
T Consensus 61 v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 61 IYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEECCEEccCcCCCCcCCCCCCEEEE
Confidence 4567776652 22458999999987
No 58
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=28.40 E-value=31 Score=28.20 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=17.2
Q ss_pred ceeCCeecCCCCeeecCCCCEEEE
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkF 490 (506)
.+|||+-|.. .+.|.+||.|.|
T Consensus 70 v~VNg~~v~~--~~~L~dGDeV~i 91 (98)
T 1vjk_A 70 IAVNGRYVSW--DEELKDGDVVGV 91 (98)
T ss_dssp EEETTBCCCT--TCBCCTTCEEEE
T ss_pred EEECCEECCC--CCCCCCCCEEEE
Confidence 5677777764 458999999987
No 59
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=28.07 E-value=42 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.1
Q ss_pred ceeCCeecCCCCeeecCCCCEEEE
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkF 490 (506)
+.|||+-++... .|++||.|.|
T Consensus 42 vavN~~~v~~~~--~L~~gD~V~i 63 (70)
T 1ryj_A 42 VKKNGQIVIDEE--EIFDGDIIEV 63 (70)
T ss_dssp EEETTEECCTTS--BCCTTCEEEE
T ss_pred EEECCEECCCcc--cCCCCCEEEE
Confidence 346777666543 8999999987
No 60
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=27.46 E-value=24 Score=29.10 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=20.2
Q ss_pred CCCcceeCCeecCC--CCeeecCCCCEEEE
Q 010608 463 STNKTYLNDNPIEP--QRYYELFEKDTIKF 490 (506)
Q Consensus 463 STNGTfVNGeRI~~--~r~~eL~dGDvIkF 490 (506)
|.+-.+|||+-|.. ...+.|++||.|.|
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEE
Confidence 34457888887742 33458999999987
No 61
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=26.99 E-value=12 Score=28.71 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=17.3
Q ss_pred ceeCCeecCCCC--eeecCCCCEEEE
Q 010608 467 TYLNDNPIEPQR--YYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~~~r--~~eL~dGDvIkF 490 (506)
.+|||+-|+... .+.|++||.|.|
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEE
Confidence 567887776532 257999999976
No 62
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=25.14 E-value=36 Score=27.92 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=17.6
Q ss_pred ceeCCeecC--CCCeeecCCCCEEEE
Q 010608 467 TYLNDNPIE--PQRYYELFEKDTIKF 490 (506)
Q Consensus 467 TfVNGeRI~--~~r~~eL~dGDvIkF 490 (506)
.+||+.-+. .+.-++|++||.|.|
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEE
Confidence 678888654 233468999999988
No 63
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=24.08 E-value=20 Score=28.31 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=17.5
Q ss_pred cceeCCeecCCCCeeecCCCCEEEE
Q 010608 466 KTYLNDNPIEPQRYYELFEKDTIKF 490 (506)
Q Consensus 466 GTfVNGeRI~~~r~~eL~dGDvIkF 490 (506)
-..|||+.|... +.|++||.|.|
T Consensus 48 ~VavNg~~v~~~--~~L~dGD~V~i 70 (77)
T 1rws_A 48 IAKVNGKVVLED--DEVKDGDFVEV 70 (77)
T ss_dssp CEEETTEEECSS--SCCCSSCCCBC
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 356788777654 68999999876
No 64
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=20.11 E-value=36 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=18.3
Q ss_pred ceeCCeecCCCCeeecCCCCEEEEc
Q 010608 467 TYLNDNPIEPQRYYELFEKDTIKFG 491 (506)
Q Consensus 467 TfVNGeRI~~~r~~eL~dGDvIkFG 491 (506)
+.+|+++|... ++|.+||+|+|=
T Consensus 63 aK~~~qrVgld--h~L~d~DVV~Iv 85 (93)
T 2eki_A 63 VKHNPQKVGKD--HTLEDEDVIQIV 85 (93)
T ss_dssp SSSSSEEECSS--CCCCSSEEECEE
T ss_pred ccCCCEECCCC--cEecCCCEEEEE
Confidence 44588999854 689999999873
Done!