Query 010610
Match_columns 506
No_of_seqs 247 out of 1556
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02623 pyruvate kinase 100.0 1E-125 2E-130 1021.0 49.6 502 2-506 3-508 (581)
2 PLN02762 pyruvate kinase compl 100.0 8E-124 2E-128 998.2 47.3 399 107-506 24-441 (509)
3 PTZ00066 pyruvate kinase; Prov 100.0 4E-123 9E-128 992.2 46.5 403 104-506 34-443 (513)
4 PLN02461 Probable pyruvate kin 100.0 1E-121 2E-126 981.9 46.5 400 105-505 18-426 (511)
5 PRK09206 pyruvate kinase; Prov 100.0 4E-121 8E-126 972.7 47.2 397 107-506 1-402 (470)
6 COG0469 PykF Pyruvate kinase [ 100.0 3E-121 7E-126 968.7 45.5 401 105-506 2-407 (477)
7 PRK06247 pyruvate kinase; Prov 100.0 1E-120 2E-125 968.7 46.1 397 106-506 3-401 (476)
8 PLN02765 pyruvate kinase 100.0 1E-120 3E-125 974.0 47.3 397 108-506 28-441 (526)
9 PRK06354 pyruvate kinase; Prov 100.0 7E-119 1E-123 978.5 47.8 400 105-506 5-409 (590)
10 PRK05826 pyruvate kinase; Prov 100.0 7E-118 2E-122 948.3 47.7 399 106-506 2-405 (465)
11 cd00288 Pyruvate_Kinase Pyruva 100.0 7E-118 2E-122 951.4 46.6 399 107-506 1-407 (480)
12 PTZ00300 pyruvate kinase; Prov 100.0 3E-110 6E-115 886.0 43.3 372 134-506 1-380 (454)
13 TIGR01064 pyruv_kin pyruvate k 100.0 8E-110 2E-114 891.2 45.1 398 108-506 1-405 (473)
14 KOG2323 Pyruvate kinase [Carbo 100.0 4E-109 9E-114 872.7 35.0 417 82-505 2-426 (501)
15 PRK06739 pyruvate kinase; Vali 100.0 9E-108 2E-112 843.3 38.1 330 109-443 2-333 (352)
16 PF00224 PK: Pyruvate kinase, 100.0 4E-109 9E-114 856.2 27.2 337 107-444 1-344 (348)
17 PRK14725 pyruvate kinase; Prov 100.0 1.3E-98 3E-103 810.6 37.7 353 84-444 115-599 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 1.1E-96 2E-101 788.7 36.8 352 84-443 109-481 (493)
19 TIGR03239 GarL 2-dehydro-3-deo 99.7 8.1E-17 1.8E-21 160.7 11.6 135 272-420 67-235 (249)
20 PRK10558 alpha-dehydro-beta-de 99.7 1.1E-16 2.4E-21 160.3 11.4 136 271-420 73-242 (256)
21 PRK10128 2-keto-3-deoxy-L-rham 99.7 3.9E-16 8.5E-21 157.2 11.0 132 275-420 76-242 (267)
22 COG3836 HpcH 2,4-dihydroxyhept 99.6 1.6E-15 3.5E-20 148.4 11.8 136 270-419 70-240 (255)
23 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 6.6E-15 1.4E-19 146.9 10.3 131 276-420 71-236 (249)
24 PF03328 HpcH_HpaI: HpcH/HpaI 99.5 8.3E-14 1.8E-18 135.8 7.0 100 279-379 75-189 (221)
25 TIGR01418 PEP_synth phosphoeno 99.3 1E-11 2.2E-16 141.6 11.7 150 272-440 609-782 (782)
26 PRK06464 phosphoenolpyruvate s 99.3 1.4E-11 3E-16 140.7 11.9 151 273-442 617-791 (795)
27 PF02887 PK_C: Pyruvate kinase 99.3 9.3E-12 2E-16 110.2 6.6 47 460-506 1-48 (117)
28 TIGR01588 citE citrate lyase, 99.2 3.7E-11 8E-16 122.4 9.5 134 275-414 71-220 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.2 1.7E-10 3.6E-15 127.5 12.5 133 272-415 366-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.0 4.9E-10 1.1E-14 124.0 9.4 133 272-415 367-526 (575)
31 COG2301 CitE Citrate lyase bet 98.6 1.1E-07 2.3E-12 96.9 7.0 160 275-440 66-244 (283)
32 cd00727 malate_synt_A Malate s 98.4 6.6E-06 1.4E-10 89.9 15.0 128 280-415 174-345 (511)
33 PF02896 PEP-utilizers_C: PEP- 98.3 3.8E-06 8.3E-11 86.2 11.5 133 272-415 119-278 (293)
34 TIGR01344 malate_syn_A malate 98.3 1.2E-05 2.5E-10 87.9 14.1 141 264-414 162-345 (511)
35 cd00480 malate_synt Malate syn 98.2 2.4E-05 5.3E-10 85.9 15.2 126 290-415 185-345 (511)
36 PRK09255 malate synthase; Vali 98.2 1.5E-05 3.2E-10 87.6 13.4 121 287-415 204-366 (531)
37 PLN02626 malate synthase 97.9 0.00018 4E-09 79.0 14.8 123 291-415 213-372 (551)
38 PRK11061 fused phosphoenolpyru 97.1 0.00073 1.6E-08 77.7 6.6 132 288-439 549-707 (748)
39 PRK08649 inosine 5-monophospha 97.0 0.0061 1.3E-07 64.8 11.6 121 278-414 143-284 (368)
40 TIGR01828 pyru_phos_dikin pyru 96.9 0.0041 8.8E-08 72.6 10.3 134 271-415 669-850 (856)
41 COG1080 PtsA Phosphoenolpyruva 96.7 0.0065 1.4E-07 67.3 9.4 127 278-415 374-527 (574)
42 PF00478 IMPDH: IMP dehydrogen 96.6 0.036 7.7E-07 58.7 13.3 121 276-414 107-239 (352)
43 cd00381 IMPDH IMPDH: The catal 96.4 0.051 1.1E-06 56.8 13.1 123 276-414 93-225 (325)
44 TIGR02751 PEPCase_arch phospho 96.1 0.022 4.7E-07 62.7 8.8 92 289-380 122-248 (506)
45 TIGR01304 IMP_DH_rel_2 IMP deh 96.0 0.043 9.3E-07 58.5 10.4 121 279-415 145-284 (369)
46 PRK09279 pyruvate phosphate di 95.6 0.042 9.1E-07 64.4 9.2 135 270-415 674-856 (879)
47 PTZ00314 inosine-5'-monophosph 95.4 0.19 4.2E-06 55.5 12.9 123 276-415 240-373 (495)
48 PRK13655 phosphoenolpyruvate c 95.3 0.077 1.7E-06 58.4 9.3 94 287-380 119-240 (494)
49 TIGR01302 IMP_dehydrog inosine 94.7 0.48 1E-05 51.7 13.5 126 275-415 222-356 (450)
50 PLN02274 inosine-5'-monophosph 94.6 0.44 9.6E-06 52.8 12.9 124 275-414 246-379 (505)
51 COG3605 PtsP Signal transducti 94.5 0.14 3.1E-06 57.1 8.7 131 292-439 561-718 (756)
52 PRK05096 guanosine 5'-monophos 94.5 0.63 1.4E-05 49.1 13.1 124 275-414 106-241 (346)
53 PRK00009 phosphoenolpyruvate c 94.4 0.19 4E-06 59.4 9.9 92 289-380 486-605 (911)
54 TIGR03151 enACPred_II putative 94.1 0.77 1.7E-05 47.7 12.9 113 278-414 76-189 (307)
55 cd00958 DhnA Class I fructose- 93.7 1.2 2.6E-05 43.8 12.8 74 275-353 141-221 (235)
56 PRK07807 inosine 5-monophospha 93.4 0.71 1.5E-05 51.0 11.6 128 273-414 223-358 (479)
57 TIGR01305 GMP_reduct_1 guanosi 93.4 1.4 2.9E-05 46.7 13.0 126 275-415 105-241 (343)
58 PRK01130 N-acetylmannosamine-6 93.3 1.8 4E-05 42.2 13.2 135 278-434 77-218 (221)
59 PRK06843 inosine 5-monophospha 93.3 1 2.2E-05 48.7 12.3 123 276-414 152-284 (404)
60 PTZ00398 phosphoenolpyruvate c 92.7 0.42 9.1E-06 56.9 9.1 105 291-395 547-677 (974)
61 PTZ00170 D-ribulose-5-phosphat 92.5 2.5 5.3E-05 42.0 13.0 140 279-437 78-223 (228)
62 cd00429 RPE Ribulose-5-phospha 92.4 3.1 6.6E-05 39.6 13.2 134 280-431 71-210 (211)
63 PRK07107 inosine 5-monophospha 92.4 1.2 2.7E-05 49.4 11.8 122 279-414 244-380 (502)
64 PRK13125 trpA tryptophan synth 92.4 3.2 6.9E-05 41.5 13.7 116 280-415 92-214 (244)
65 cd04730 NPD_like 2-Nitropropan 92.3 2.6 5.5E-05 41.1 12.7 115 278-415 69-185 (236)
66 COG0574 PpsA Phosphoenolpyruva 92.1 0.74 1.6E-05 53.4 10.0 113 291-415 596-723 (740)
67 PRK13813 orotidine 5'-phosphat 92.1 1.4 2.9E-05 42.9 10.4 132 283-437 74-214 (215)
68 cd03174 DRE_TIM_metallolyase D 91.9 8.5 0.00018 38.0 16.1 192 275-485 17-225 (265)
69 cd04726 KGPDC_HPS 3-Keto-L-gul 91.8 6.9 0.00015 37.2 14.8 130 281-429 69-200 (202)
70 PRK05458 guanosine 5'-monophos 91.8 2.3 4.9E-05 44.8 12.3 127 275-416 95-231 (326)
71 TIGR01949 AroFGH_arch predicte 91.5 3.8 8.2E-05 41.2 13.1 67 282-351 162-232 (258)
72 TIGR01163 rpe ribulose-phospha 90.9 7.2 0.00016 37.1 14.0 134 280-430 70-208 (210)
73 PRK08883 ribulose-phosphate 3- 90.6 7.6 0.00017 38.5 14.1 147 270-436 62-216 (220)
74 cd04722 TIM_phosphate_binding 90.6 5 0.00011 36.6 12.1 116 282-415 77-199 (200)
75 TIGR01306 GMP_reduct_2 guanosi 90.5 5.3 0.00011 42.1 13.4 126 274-415 91-227 (321)
76 PRK05581 ribulose-phosphate 3- 90.5 7.8 0.00017 37.3 13.9 140 279-434 74-217 (220)
77 cd04740 DHOD_1B_like Dihydroor 90.3 11 0.00024 38.3 15.5 139 283-442 109-281 (296)
78 PLN02334 ribulose-phosphate 3- 90.1 11 0.00023 37.3 14.7 151 270-438 69-225 (229)
79 cd07944 DRE_TIM_HOA_like 4-hyd 90.0 21 0.00046 36.3 17.1 151 274-439 17-181 (266)
80 PRK05567 inosine 5'-monophosph 89.7 4.8 0.0001 44.4 13.1 122 277-414 228-359 (486)
81 PRK08745 ribulose-phosphate 3- 89.6 11 0.00024 37.5 14.4 139 279-437 75-221 (223)
82 PTZ00005 phosphoglycerate kina 89.3 14 0.0003 40.4 15.8 301 123-494 45-383 (417)
83 PRK15452 putative protease; Pr 89.2 3.1 6.7E-05 45.6 11.0 116 277-418 11-144 (443)
84 PRK07565 dihydroorotate dehydr 89.0 6.3 0.00014 41.2 12.8 142 283-443 121-291 (334)
85 cd00945 Aldolase_Class_I Class 88.9 9.4 0.0002 35.4 12.7 118 281-415 18-149 (201)
86 PRK13307 bifunctional formalde 88.8 7 0.00015 42.2 13.1 131 282-435 243-378 (391)
87 cd02940 DHPD_FMN Dihydropyrimi 88.8 8.2 0.00018 39.7 13.3 125 277-416 113-282 (299)
88 cd04729 NanE N-acetylmannosami 88.6 6.9 0.00015 38.1 12.0 119 278-415 81-206 (219)
89 TIGR03128 RuMP_HxlA 3-hexulose 88.5 23 0.0005 33.8 15.4 136 281-434 68-205 (206)
90 PRK00694 4-hydroxy-3-methylbut 88.4 9.5 0.00021 43.1 14.0 159 278-443 47-232 (606)
91 PRK15447 putative protease; Pr 88.4 4.3 9.3E-05 42.0 10.9 116 277-418 15-141 (301)
92 PRK08227 autoinducer 2 aldolas 88.4 8.1 0.00018 39.6 12.7 148 333-502 48-197 (264)
93 TIGR01303 IMP_DH_rel_1 IMP deh 88.3 3.8 8.3E-05 45.2 11.0 128 273-415 221-357 (475)
94 PF14010 PEPcase_2: Phosphoeno 88.3 0.69 1.5E-05 51.0 5.2 91 288-378 119-244 (491)
95 PLN03034 phosphoglycerate kina 88.0 13 0.00029 41.1 14.7 303 123-496 121-444 (481)
96 PRK09722 allulose-6-phosphate 87.9 24 0.00052 35.4 15.4 149 273-439 66-223 (229)
97 PRK02290 3-dehydroquinate synt 87.8 3.6 7.7E-05 43.6 9.9 132 276-437 13-160 (344)
98 cd04732 HisA HisA. Phosphorib 87.7 13 0.00028 36.2 13.3 131 278-426 84-230 (234)
99 COG2352 Ppc Phosphoenolpyruvat 87.6 1.3 2.7E-05 51.6 6.9 123 255-379 446-601 (910)
100 cd00331 IGPS Indole-3-glycerol 87.6 16 0.00035 35.4 13.8 127 280-429 85-215 (217)
101 PRK07226 fructose-bisphosphate 87.4 14 0.00031 37.4 13.8 98 272-380 34-145 (267)
102 cd02810 DHOD_DHPD_FMN Dihydroo 87.4 10 0.00023 38.3 12.9 123 280-415 115-272 (289)
103 PF00311 PEPcase: Phosphoenolp 87.4 1.4 3.1E-05 51.5 7.3 90 291-380 365-482 (794)
104 PF01959 DHQS: 3-dehydroquinat 87.3 3.5 7.5E-05 43.9 9.5 133 279-437 15-169 (354)
105 PRK02048 4-hydroxy-3-methylbut 87.3 11 0.00024 42.8 13.8 149 279-435 44-223 (611)
106 PRK07695 transcriptional regul 87.2 12 0.00025 36.1 12.5 132 282-436 66-198 (201)
107 PF04551 GcpE: GcpE protein; 87.1 2.9 6.2E-05 44.5 8.7 153 280-439 35-201 (359)
108 PRK06852 aldolase; Validated 87.0 18 0.00038 37.9 14.4 125 373-501 91-234 (304)
109 KOG2550 IMP dehydrogenase/GMP 87.0 3.5 7.6E-05 44.7 9.3 125 275-414 249-382 (503)
110 TIGR02090 LEU1_arch isopropylm 86.4 41 0.00089 35.8 17.1 155 274-438 19-183 (363)
111 PRK08318 dihydropyrimidine deh 85.9 14 0.0003 39.8 13.5 123 278-415 114-282 (420)
112 PRK05581 ribulose-phosphate 3- 85.7 21 0.00045 34.4 13.4 131 280-437 20-163 (220)
113 cd00452 KDPG_aldolase KDPG and 85.7 15 0.00033 35.1 12.4 103 280-415 20-124 (190)
114 PRK09250 fructose-bisphosphate 85.6 17 0.00037 38.8 13.5 174 293-484 38-241 (348)
115 PRK08999 hypothetical protein; 85.4 18 0.00038 37.1 13.5 42 123-164 147-188 (312)
116 cd07945 DRE_TIM_CMS Leptospira 85.4 36 0.00079 34.9 15.6 167 259-438 6-189 (280)
117 PLN02591 tryptophan synthase 85.2 27 0.00058 35.5 14.3 119 280-415 97-218 (250)
118 cd04724 Tryptophan_synthase_al 85.2 12 0.00025 37.5 11.7 100 270-380 9-135 (242)
119 PRK07028 bifunctional hexulose 85.1 26 0.00057 37.9 15.2 137 281-436 73-211 (430)
120 CHL00200 trpA tryptophan synth 85.1 26 0.00057 35.7 14.3 121 280-415 110-231 (263)
121 COG1830 FbaB DhnA-type fructos 84.9 25 0.00055 36.1 13.9 164 316-502 22-207 (265)
122 COG0826 Collagenase and relate 84.9 9.2 0.0002 40.6 11.3 129 276-438 13-159 (347)
123 TIGR01163 rpe ribulose-phospha 84.3 38 0.00083 32.1 15.1 136 280-439 15-160 (210)
124 PRK11858 aksA trans-homoaconit 84.2 53 0.0011 35.1 16.8 155 274-438 23-187 (378)
125 TIGR00007 phosphoribosylformim 83.6 13 0.00029 36.2 11.1 126 277-424 82-227 (230)
126 PRK13210 putative L-xylulose 5 83.6 30 0.00065 34.4 13.9 144 279-429 19-198 (284)
127 cd04726 KGPDC_HPS 3-Keto-L-gul 83.6 15 0.00032 34.8 11.3 116 275-415 11-133 (202)
128 cd07939 DRE_TIM_NifV Streptomy 83.5 47 0.001 33.3 15.3 154 274-438 17-181 (259)
129 PRK00043 thiE thiamine-phospha 82.6 18 0.00039 34.5 11.4 131 281-438 73-211 (212)
130 PF00478 IMPDH: IMP dehydrogen 82.5 3 6.5E-05 44.4 6.5 51 108-158 95-145 (352)
131 PLN02925 4-hydroxy-3-methylbut 81.9 22 0.00048 41.1 13.3 155 279-440 113-294 (733)
132 PRK04302 triosephosphate isome 81.8 33 0.00071 33.7 13.2 134 282-432 78-219 (223)
133 TIGR00612 ispG_gcpE 1-hydroxy- 81.1 16 0.00034 38.8 11.0 145 281-439 39-192 (346)
134 cd00429 RPE Ribulose-5-phospha 80.7 52 0.0011 31.1 15.8 133 280-439 16-161 (211)
135 PRK03620 5-dehydro-4-deoxygluc 80.5 12 0.00026 38.6 10.0 97 280-380 32-138 (303)
136 cd00954 NAL N-Acetylneuraminic 80.2 12 0.00027 38.1 9.9 97 280-380 25-134 (288)
137 PRK05718 keto-hydroxyglutarate 79.9 9.2 0.0002 37.8 8.5 108 292-414 17-134 (212)
138 TIGR00262 trpA tryptophan synt 79.9 37 0.0008 34.4 13.1 118 280-415 106-227 (256)
139 PRK05892 nucleoside diphosphat 79.4 12 0.00026 35.4 8.8 128 70-242 6-155 (158)
140 PRK00915 2-isopropylmalate syn 79.4 81 0.0018 35.2 16.6 152 274-438 23-191 (513)
141 cd01561 CBS_like CBS_like: Thi 79.3 40 0.00086 34.2 13.2 121 365-505 67-195 (291)
142 PRK09389 (R)-citramalate synth 79.0 1.1E+02 0.0024 34.1 17.4 152 275-436 22-183 (488)
143 cd04742 NPD_FabD 2-Nitropropan 79.0 31 0.00068 37.7 12.8 124 278-414 84-247 (418)
144 cd02803 OYE_like_FMN_family Ol 78.8 44 0.00096 34.3 13.5 129 272-415 129-311 (327)
145 TIGR00674 dapA dihydrodipicoli 78.8 14 0.0003 37.6 9.7 97 280-380 23-130 (285)
146 cd02811 IDI-2_FMN Isopentenyl- 78.7 37 0.0008 35.6 13.0 56 374-442 255-313 (326)
147 PF03060 NMO: Nitronate monoox 78.7 24 0.00053 36.8 11.7 113 278-414 102-218 (330)
148 PRK07259 dihydroorotate dehydr 78.7 31 0.00067 35.3 12.3 140 283-443 111-285 (301)
149 TIGR03586 PseI pseudaminic aci 78.5 25 0.00054 37.2 11.7 62 333-414 103-166 (327)
150 TIGR01037 pyrD_sub1_fam dihydr 78.3 65 0.0014 32.9 14.5 133 289-442 118-284 (300)
151 PF03102 NeuB: NeuB family; I 78.3 9.6 0.00021 38.5 8.2 100 300-425 54-154 (241)
152 PRK02615 thiamine-phosphate py 78.1 43 0.00092 35.7 13.3 54 111-164 148-201 (347)
153 cd00945 Aldolase_Class_I Class 77.9 44 0.00096 30.8 12.2 104 394-504 64-179 (201)
154 PRK00043 thiE thiamine-phospha 77.5 35 0.00076 32.4 11.6 102 279-415 24-131 (212)
155 PRK07226 fructose-bisphosphate 77.4 64 0.0014 32.7 14.0 67 282-351 166-236 (267)
156 cd00381 IMPDH IMPDH: The catal 77.1 4.9 0.00011 42.1 6.0 48 112-159 85-132 (325)
157 cd00950 DHDPS Dihydrodipicolin 76.7 18 0.00038 36.7 9.7 97 280-380 25-132 (284)
158 PRK06015 keto-hydroxyglutarate 76.5 13 0.00027 36.7 8.3 111 295-420 9-129 (201)
159 cd00377 ICL_PEPM Members of th 76.4 13 0.00029 37.2 8.6 111 280-414 88-225 (243)
160 TIGR02660 nifV_homocitr homoci 76.3 77 0.0017 33.7 14.8 154 274-438 20-184 (365)
161 cd01573 modD_like ModD; Quinol 76.3 11 0.00023 38.7 8.1 66 277-347 191-259 (272)
162 PLN02746 hydroxymethylglutaryl 76.3 30 0.00066 36.8 11.6 166 258-437 54-238 (347)
163 PRK07315 fructose-bisphosphate 76.2 24 0.00053 36.6 10.7 126 307-438 67-200 (293)
164 cd00958 DhnA Class I fructose- 76.2 81 0.0018 30.9 16.3 138 277-435 77-234 (235)
165 cd02809 alpha_hydroxyacid_oxid 75.8 35 0.00076 35.1 11.7 112 280-416 133-257 (299)
166 TIGR03128 RuMP_HxlA 3-hexulose 75.7 37 0.0008 32.4 11.2 120 274-415 9-133 (206)
167 PRK06512 thiamine-phosphate py 75.5 45 0.00098 33.1 12.0 131 282-436 80-213 (221)
168 PRK04147 N-acetylneuraminate l 75.4 31 0.00067 35.3 11.1 97 280-380 28-136 (293)
169 TIGR03569 NeuB_NnaB N-acetylne 75.3 33 0.00072 36.3 11.5 85 301-410 75-161 (329)
170 PLN02826 dihydroorotate dehydr 75.3 51 0.0011 35.9 13.2 139 286-442 213-392 (409)
171 PRK07428 nicotinate-nucleotide 75.1 14 0.00031 38.2 8.6 66 277-347 204-272 (288)
172 PF00682 HMGL-like: HMGL-like 74.9 87 0.0019 30.6 15.6 194 274-485 11-216 (237)
173 PRK05848 nicotinate-nucleotide 74.6 14 0.0003 38.0 8.3 65 278-347 191-258 (273)
174 PRK07315 fructose-bisphosphate 74.0 32 0.0007 35.7 10.9 43 122-164 88-130 (293)
175 PRK09250 fructose-bisphosphate 74.0 42 0.00091 35.9 11.8 91 277-379 91-197 (348)
176 cd01562 Thr-dehyd Threonine de 73.8 57 0.0012 33.1 12.6 116 365-505 79-200 (304)
177 PRK04180 pyridoxal biosynthesi 73.8 41 0.00089 35.1 11.4 116 294-441 56-173 (293)
178 TIGR00977 LeuA_rel 2-isopropyl 73.5 1.3E+02 0.0027 34.0 16.1 171 259-439 10-197 (526)
179 PRK08195 4-hyroxy-2-oxovalerat 73.2 98 0.0021 32.7 14.5 134 278-430 90-239 (337)
180 PRK07334 threonine dehydratase 73.2 63 0.0014 34.7 13.3 116 365-505 85-206 (403)
181 PF03437 BtpA: BtpA family; I 73.1 13 0.00029 37.8 7.7 83 275-364 156-250 (254)
182 cd04727 pdxS PdxS is a subunit 72.5 1.1E+02 0.0024 31.9 14.1 131 280-442 19-165 (283)
183 PRK00278 trpC indole-3-glycero 72.4 86 0.0019 31.8 13.4 131 280-431 124-256 (260)
184 PLN02417 dihydrodipicolinate s 72.3 24 0.00052 36.0 9.4 95 280-380 26-131 (280)
185 TIGR02814 pfaD_fam PfaD family 72.0 45 0.00098 36.8 11.9 123 278-414 89-252 (444)
186 cd00408 DHDPS-like Dihydrodipi 72.0 36 0.00078 34.3 10.6 97 280-380 22-129 (281)
187 cd00405 PRAI Phosphoribosylant 72.0 45 0.00097 32.1 10.8 119 277-419 7-131 (203)
188 cd00331 IGPS Indole-3-glycerol 71.9 99 0.0021 29.9 15.0 130 275-437 29-168 (217)
189 PF00899 ThiF: ThiF family; I 71.7 27 0.00058 31.2 8.6 68 303-381 57-124 (135)
190 cd02922 FCB2_FMN Flavocytochro 71.6 74 0.0016 33.8 13.1 94 299-415 200-300 (344)
191 PRK05286 dihydroorotate dehydr 71.2 32 0.00069 36.3 10.3 120 287-418 167-321 (344)
192 PF01729 QRPTase_C: Quinolinat 71.1 11 0.00023 36.1 6.1 63 279-346 90-155 (169)
193 PLN02321 2-isopropylmalate syn 71.0 1.4E+02 0.003 34.5 15.9 155 274-438 105-282 (632)
194 PRK00286 xseA exodeoxyribonucl 70.9 1.4E+02 0.0029 32.5 15.3 193 151-381 10-231 (438)
195 TIGR01302 IMP_dehydrog inosine 70.9 7.6 0.00016 42.5 5.8 49 110-158 213-261 (450)
196 cd00951 KDGDH 5-dehydro-4-deox 70.9 29 0.00063 35.5 9.7 97 280-380 25-131 (289)
197 TIGR01859 fruc_bis_ald_ fructo 70.9 55 0.0012 33.8 11.7 118 318-439 75-200 (282)
198 TIGR01182 eda Entner-Doudoroff 70.8 19 0.00042 35.5 8.0 102 283-416 27-129 (204)
199 PRK13209 L-xylulose 5-phosphat 70.8 66 0.0014 32.1 12.1 133 279-418 24-188 (283)
200 cd00564 TMP_TenI Thiamine mono 70.8 72 0.0016 29.4 11.7 125 282-431 65-194 (196)
201 PRK08385 nicotinate-nucleotide 70.6 20 0.00042 37.1 8.3 67 278-347 191-260 (278)
202 PRK08227 autoinducer 2 aldolas 70.6 16 0.00034 37.5 7.6 141 280-435 98-246 (264)
203 PRK00278 trpC indole-3-glycero 70.2 1E+02 0.0022 31.3 13.3 112 278-417 71-189 (260)
204 TIGR01136 cysKM cysteine synth 70.1 1E+02 0.0022 31.5 13.5 119 365-505 72-198 (299)
205 PRK14024 phosphoribosyl isomer 69.7 66 0.0014 32.0 11.7 135 277-428 85-235 (241)
206 PRK03170 dihydrodipicolinate s 69.6 30 0.00066 35.2 9.5 97 280-380 26-133 (292)
207 TIGR00736 nifR3_rel_arch TIM-b 69.6 65 0.0014 32.4 11.6 120 275-415 78-220 (231)
208 cd00640 Trp-synth-beta_II Tryp 69.5 1E+02 0.0022 30.2 13.0 117 365-505 64-188 (244)
209 PLN02970 serine racemase 69.5 85 0.0018 32.7 13.0 151 318-505 42-210 (328)
210 COG0710 AroD 3-dehydroquinate 69.5 79 0.0017 31.9 12.1 140 275-435 76-228 (231)
211 cd04737 LOX_like_FMN L-Lactate 69.4 55 0.0012 34.9 11.6 92 300-415 209-305 (351)
212 TIGR00973 leuA_bact 2-isopropy 69.4 1.9E+02 0.0042 32.2 17.2 151 274-438 20-188 (494)
213 PRK12483 threonine dehydratase 69.3 87 0.0019 35.2 13.6 152 318-505 52-221 (521)
214 PRK05096 guanosine 5'-monophos 69.3 9.4 0.0002 40.6 5.8 48 111-158 98-147 (346)
215 PRK00366 ispG 4-hydroxy-3-meth 69.0 52 0.0011 35.3 11.1 144 280-438 46-200 (360)
216 PF01791 DeoC: DeoC/LacD famil 69.0 28 0.00061 34.3 8.9 145 279-439 22-189 (236)
217 cd04723 HisA_HisF Phosphoribos 68.9 79 0.0017 31.3 12.1 130 278-428 89-231 (233)
218 TIGR00683 nanA N-acetylneurami 68.9 57 0.0012 33.4 11.4 98 279-380 24-134 (290)
219 PRK00311 panB 3-methyl-2-oxobu 68.6 95 0.0021 31.9 12.7 146 273-439 19-196 (264)
220 TIGR01139 cysK cysteine syntha 68.5 1.2E+02 0.0025 31.0 13.5 119 366-505 72-198 (298)
221 cd04737 LOX_like_FMN L-Lactate 68.4 17 0.00036 38.8 7.5 95 278-376 231-341 (351)
222 TIGR00343 pyridoxal 5'-phospha 68.4 70 0.0015 33.4 11.6 114 296-441 51-166 (287)
223 PRK13397 3-deoxy-7-phosphohept 68.0 67 0.0015 32.8 11.4 89 303-415 67-156 (250)
224 PRK06552 keto-hydroxyglutarate 68.0 42 0.00091 33.2 9.8 109 292-415 15-136 (213)
225 TIGR01305 GMP_reduct_1 guanosi 67.9 11 0.00024 40.1 5.9 48 111-158 97-146 (343)
226 TIGR01361 DAHP_synth_Bsub phos 67.7 57 0.0012 33.2 10.9 91 301-415 75-166 (260)
227 PRK10737 FKBP-type peptidyl-pr 67.6 20 0.00043 35.3 7.3 59 189-247 51-118 (196)
228 cd00405 PRAI Phosphoribosylant 67.2 96 0.0021 29.8 12.0 115 283-422 67-190 (203)
229 COG1465 Predicted alternative 67.0 72 0.0016 33.6 11.3 132 280-440 19-194 (376)
230 cd07948 DRE_TIM_HCS Saccharomy 66.9 1.5E+02 0.0033 30.1 17.7 201 258-486 8-220 (262)
231 PRK08091 ribulose-phosphate 3- 66.6 1.5E+02 0.0032 29.9 14.9 136 279-434 81-226 (228)
232 cd06557 KPHMT-like Ketopantoat 66.6 74 0.0016 32.5 11.4 146 273-439 16-193 (254)
233 PRK05692 hydroxymethylglutaryl 66.3 87 0.0019 32.3 12.1 167 259-438 13-197 (287)
234 PRK08417 dihydroorotase; Provi 66.1 1.7E+02 0.0037 31.1 14.6 128 270-406 40-189 (386)
235 cd00952 CHBPH_aldolase Trans-o 66.0 82 0.0018 32.7 11.9 97 280-380 33-141 (309)
236 cd04738 DHOD_2_like Dihydrooro 65.6 64 0.0014 33.7 11.1 118 288-417 159-311 (327)
237 PRK05458 guanosine 5'-monophos 65.6 11 0.00023 39.9 5.3 45 114-158 90-136 (326)
238 cd04739 DHOD_like Dihydroorota 65.2 1.8E+02 0.0039 30.4 14.5 144 278-443 113-289 (325)
239 cd07941 DRE_TIM_LeuA3 Desulfob 65.1 1.6E+02 0.0036 29.8 16.3 159 275-438 18-193 (273)
240 PRK07896 nicotinate-nucleotide 65.0 21 0.00046 37.1 7.3 65 278-347 208-275 (289)
241 PF00290 Trp_syntA: Tryptophan 64.9 93 0.002 31.8 11.8 118 281-415 107-226 (259)
242 PRK09856 fructoselysine 3-epim 64.5 1.2E+02 0.0025 30.1 12.3 148 279-430 16-198 (275)
243 PRK12595 bifunctional 3-deoxy- 64.4 74 0.0016 34.0 11.4 90 302-415 169-259 (360)
244 PRK06843 inosine 5-monophospha 64.4 11 0.00025 40.8 5.4 50 109-158 141-190 (404)
245 TIGR01138 cysM cysteine syntha 64.1 1.6E+02 0.0035 30.0 13.6 118 366-505 74-198 (290)
246 TIGR00736 nifR3_rel_arch TIM-b 64.1 22 0.00049 35.7 7.1 70 283-356 155-230 (231)
247 PLN02495 oxidoreductase, actin 64.0 2.2E+02 0.0047 30.9 14.9 147 275-442 125-321 (385)
248 PRK07695 transcriptional regul 64.0 20 0.00043 34.4 6.6 34 125-158 19-52 (201)
249 PRK06381 threonine synthase; V 63.9 1.4E+02 0.0031 30.6 13.3 118 365-505 77-207 (319)
250 PLN02274 inosine-5'-monophosph 63.6 13 0.00028 41.4 5.8 50 109-158 236-285 (505)
251 TIGR01462 greA transcription e 63.4 41 0.00088 31.3 8.3 91 147-241 49-150 (151)
252 TIGR03572 WbuZ glycosyl amidat 63.3 1.2E+02 0.0025 29.8 11.9 120 278-415 85-227 (232)
253 TIGR00739 yajC preprotein tran 63.1 18 0.00039 30.7 5.3 42 215-257 32-73 (84)
254 COG0036 Rpe Pentose-5-phosphat 63.0 73 0.0016 32.0 10.3 71 279-356 74-144 (220)
255 cd04727 pdxS PdxS is a subunit 62.9 99 0.0021 32.2 11.5 137 279-437 77-247 (283)
256 PTZ00314 inosine-5'-monophosph 62.7 11 0.00023 42.0 4.9 45 114-158 234-278 (495)
257 PRK06815 hypothetical protein; 62.7 97 0.0021 32.0 11.8 115 366-505 83-203 (317)
258 TIGR01949 AroFGH_arch predicte 62.6 1.4E+02 0.0031 29.9 12.6 132 280-436 94-248 (258)
259 PRK13398 3-deoxy-7-phosphohept 62.6 1E+02 0.0022 31.6 11.6 105 301-429 77-184 (266)
260 TIGR02313 HpaI-NOT-DapA 2,4-di 62.3 93 0.002 32.0 11.4 97 280-380 25-133 (294)
261 TIGR01127 ilvA_1Cterm threonin 62.0 1.3E+02 0.0029 31.7 12.9 117 364-505 61-183 (380)
262 TIGR00343 pyridoxal 5'-phospha 62.0 1.6E+02 0.0035 30.8 12.9 139 279-437 79-250 (287)
263 PRK13585 1-(5-phosphoribosyl)- 61.8 1.4E+02 0.0031 29.1 12.3 129 277-426 86-233 (241)
264 PRK15452 putative protease; Pr 61.7 28 0.0006 38.3 7.8 85 318-415 4-96 (443)
265 PF07521 RMMBL: RNA-metabolisi 61.7 5.7 0.00012 29.3 1.8 24 134-157 7-31 (43)
266 PRK02615 thiamine-phosphate py 61.6 1.2E+02 0.0026 32.3 12.4 131 282-437 210-344 (347)
267 PRK06382 threonine dehydratase 61.5 1.5E+02 0.0032 31.9 13.3 115 366-505 88-208 (406)
268 PRK08005 epimerase; Validated 61.4 1.8E+02 0.0038 28.9 13.8 139 273-431 65-207 (210)
269 TIGR03249 KdgD 5-dehydro-4-deo 61.3 72 0.0016 32.7 10.4 95 280-380 30-136 (296)
270 cd00408 DHDPS-like Dihydrodipi 61.2 54 0.0012 33.0 9.4 89 340-439 32-123 (281)
271 PRK08638 threonine dehydratase 60.6 1.4E+02 0.0031 31.3 12.6 116 365-505 89-210 (333)
272 cd02808 GltS_FMN Glutamate syn 60.5 15 0.00033 39.4 5.6 92 278-382 226-341 (392)
273 PRK14057 epimerase; Provisiona 60.5 2.1E+02 0.0045 29.4 14.9 142 279-440 88-246 (254)
274 PRK13111 trpA tryptophan synth 60.4 76 0.0016 32.3 10.2 117 280-415 108-228 (258)
275 cd07940 DRE_TIM_IPMS 2-isoprop 60.4 1.9E+02 0.0042 29.1 15.8 191 275-485 18-224 (268)
276 TIGR00126 deoC deoxyribose-pho 60.4 64 0.0014 32.0 9.4 141 272-436 13-173 (211)
277 cd02808 GltS_FMN Glutamate syn 60.3 1.4E+02 0.003 32.2 12.7 118 285-415 179-314 (392)
278 cd01492 Aos1_SUMO Ubiquitin ac 60.2 57 0.0012 31.6 8.9 66 304-381 77-142 (197)
279 TIGR00259 thylakoid_BtpA membr 60.2 49 0.0011 33.9 8.8 72 274-348 154-229 (257)
280 COG0826 Collagenase and relate 60.2 42 0.0009 35.8 8.6 81 328-415 14-99 (347)
281 PRK13308 ureC urease subunit a 60.1 3.1E+02 0.0068 31.4 17.6 131 283-430 149-288 (569)
282 TIGR02356 adenyl_thiF thiazole 60.0 50 0.0011 32.0 8.6 68 303-381 76-143 (202)
283 TIGR01306 GMP_reduct_2 guanosi 59.9 18 0.00039 38.2 5.7 48 111-158 84-133 (321)
284 PF00834 Ribul_P_3_epim: Ribul 59.8 36 0.00078 33.4 7.5 118 279-415 70-194 (201)
285 PRK09224 threonine dehydratase 59.7 1.6E+02 0.0035 32.8 13.4 116 365-505 82-204 (504)
286 PRK02083 imidazole glycerol ph 59.5 1.9E+02 0.0041 28.7 14.2 130 278-428 85-240 (253)
287 PRK04180 pyridoxal biosynthesi 58.8 1.2E+02 0.0027 31.7 11.4 139 279-437 86-256 (293)
288 cd00959 DeoC 2-deoxyribose-5-p 58.8 1.4E+02 0.003 28.8 11.4 148 272-436 12-172 (203)
289 TIGR02320 PEP_mutase phosphoen 58.7 41 0.00089 34.8 8.1 66 281-346 97-189 (285)
290 cd02932 OYE_YqiM_FMN Old yello 58.7 1.8E+02 0.0039 30.3 13.0 127 273-415 143-320 (336)
291 COG0119 LeuA Isopropylmalate/h 58.6 2.8E+02 0.006 30.3 15.5 155 273-439 20-189 (409)
292 cd08556 GDPD Glycerophosphodie 58.6 76 0.0016 29.2 9.2 40 362-414 148-187 (189)
293 PRK07476 eutB threonine dehydr 58.4 1.6E+02 0.0034 30.5 12.5 116 365-505 81-202 (322)
294 PLN03013 cysteine synthase 58.4 1.6E+02 0.0035 32.4 12.9 118 367-505 191-315 (429)
295 cd08567 GDPD_SpGDE_like Glycer 58.1 55 0.0012 32.3 8.7 42 360-414 217-258 (263)
296 TIGR02708 L_lactate_ox L-lacta 58.1 54 0.0012 35.3 9.0 92 300-416 216-313 (367)
297 cd00953 KDG_aldolase KDG (2-ke 57.7 86 0.0019 31.9 10.2 91 282-380 26-127 (279)
298 cd02922 FCB2_FMN Flavocytochro 57.7 34 0.00074 36.3 7.5 95 278-376 223-336 (344)
299 PLN02535 glycolate oxidase 57.7 23 0.00051 37.9 6.2 70 278-351 233-312 (364)
300 TIGR02708 L_lactate_ox L-lacta 57.6 34 0.00073 36.8 7.4 95 279-377 239-349 (367)
301 TIGR00259 thylakoid_BtpA membr 57.5 79 0.0017 32.4 9.8 115 278-415 91-227 (257)
302 TIGR00237 xseA exodeoxyribonuc 57.5 77 0.0017 34.6 10.3 161 195-381 36-226 (432)
303 PRK07114 keto-hydroxyglutarate 57.4 55 0.0012 32.8 8.4 116 291-421 16-145 (222)
304 PRK07028 bifunctional hexulose 57.3 1.6E+02 0.0034 31.9 12.6 126 269-415 8-138 (430)
305 cd00564 TMP_TenI Thiamine mono 57.2 32 0.0007 31.8 6.5 42 123-164 15-56 (196)
306 TIGR01137 cysta_beta cystathio 57.1 2E+02 0.0043 31.0 13.4 122 366-505 77-205 (454)
307 cd04731 HisF The cyclase subun 57.1 2E+02 0.0044 28.3 13.2 131 278-428 82-236 (243)
308 PRK10717 cysteine synthase A; 57.0 2.1E+02 0.0046 29.6 13.1 124 366-505 79-211 (330)
309 PF01274 Malate_synthase: Mala 56.7 36 0.00079 38.3 7.8 118 289-415 203-364 (526)
310 cd01572 QPRTase Quinolinate ph 56.6 33 0.00072 35.1 6.9 63 277-347 190-255 (268)
311 cd02809 alpha_hydroxyacid_oxid 56.5 35 0.00075 35.1 7.1 68 279-350 183-260 (299)
312 PRK09140 2-dehydro-3-deoxy-6-p 56.5 1.5E+02 0.0033 29.0 11.3 101 283-414 29-130 (206)
313 TIGR00735 hisF imidazoleglycer 56.4 47 0.001 33.2 8.0 87 279-377 158-253 (254)
314 PRK07998 gatY putative fructos 56.4 1.7E+02 0.0038 30.3 12.2 117 316-437 73-197 (283)
315 COG0329 DapA Dihydrodipicolina 56.4 1.2E+02 0.0026 31.4 11.1 97 280-380 29-136 (299)
316 TIGR01334 modD putative molybd 56.3 33 0.00071 35.5 6.8 64 278-346 197-263 (277)
317 cd01485 E1-1_like Ubiquitin ac 56.2 76 0.0016 30.7 9.1 68 304-381 77-145 (198)
318 PRK08198 threonine dehydratase 56.1 2.4E+02 0.0052 30.1 13.7 116 365-505 84-205 (404)
319 PRK11858 aksA trans-homoaconit 55.9 1.8E+02 0.0038 31.2 12.5 134 278-430 77-238 (378)
320 PRK07084 fructose-bisphosphate 55.8 1.1E+02 0.0025 32.3 10.8 126 309-438 77-215 (321)
321 PF01136 Peptidase_U32: Peptid 55.7 22 0.00047 34.7 5.3 42 121-162 157-198 (233)
322 cd01568 QPRTase_NadC Quinolina 55.6 40 0.00086 34.4 7.3 64 277-346 189-255 (269)
323 cd04728 ThiG Thiazole synthase 55.6 2.4E+02 0.0052 28.9 12.6 86 340-441 145-230 (248)
324 PRK07709 fructose-bisphosphate 55.4 1.1E+02 0.0024 31.8 10.5 117 317-438 77-202 (285)
325 PRK15447 putative protease; Pr 55.1 58 0.0013 33.7 8.5 67 340-415 29-95 (301)
326 PF00701 DHDPS: Dihydrodipicol 55.0 98 0.0021 31.4 10.1 98 280-381 26-134 (289)
327 TIGR00010 hydrolase, TatD fami 54.7 1.6E+02 0.0036 28.3 11.3 101 278-382 16-129 (252)
328 TIGR02355 moeB molybdopterin s 54.3 71 0.0015 32.0 8.8 68 303-381 79-146 (240)
329 TIGR03528 2_3_DAP_am_ly diamin 54.2 1.9E+02 0.0042 31.2 12.6 122 365-505 127-262 (396)
330 PLN02565 cysteine synthase 53.9 2.1E+02 0.0045 29.9 12.5 118 367-505 83-207 (322)
331 TIGR00674 dapA dihydrodipicoli 53.9 67 0.0015 32.6 8.7 96 334-440 26-125 (285)
332 PRK14720 transcript cleavage f 53.7 58 0.0013 39.0 9.1 135 65-243 745-902 (906)
333 cd08205 RuBisCO_IV_RLP Ribulos 53.7 1.4E+02 0.003 32.0 11.3 141 283-437 153-307 (367)
334 TIGR00222 panB 3-methyl-2-oxob 53.7 2.1E+02 0.0046 29.5 12.1 132 271-415 17-180 (263)
335 TIGR00078 nadC nicotinate-nucl 53.6 26 0.00057 35.8 5.7 62 277-346 186-250 (265)
336 PLN02495 oxidoreductase, actin 53.5 1.6E+02 0.0035 31.9 11.8 50 358-417 165-216 (385)
337 PRK05742 nicotinate-nucleotide 52.7 55 0.0012 33.8 7.8 63 277-347 197-262 (277)
338 PRK07591 threonine synthase; V 52.5 2E+02 0.0043 31.2 12.5 117 365-505 151-282 (421)
339 PLN02424 ketopantoate hydroxym 52.3 2.5E+02 0.0055 29.9 12.7 135 270-415 36-202 (332)
340 PRK00507 deoxyribose-phosphate 52.3 84 0.0018 31.3 8.8 149 272-435 17-176 (221)
341 cd03332 LMO_FMN L-Lactate 2-mo 52.1 1E+02 0.0023 33.3 10.1 70 109-183 113-183 (383)
342 PRK06801 hypothetical protein; 52.1 1.4E+02 0.003 31.0 10.7 119 316-438 73-202 (286)
343 PRK06096 molybdenum transport 52.0 36 0.00077 35.3 6.3 64 278-346 198-264 (284)
344 cd04733 OYE_like_2_FMN Old yel 51.7 2.3E+02 0.005 29.6 12.4 131 273-415 138-322 (338)
345 cd02801 DUS_like_FMN Dihydrour 51.5 2.3E+02 0.005 27.3 13.1 116 283-415 74-213 (231)
346 PRK11761 cysM cysteine synthas 51.5 2.4E+02 0.0053 28.9 12.4 118 366-505 78-202 (296)
347 PRK08185 hypothetical protein; 51.5 2E+02 0.0043 29.9 11.6 118 316-438 67-197 (283)
348 cd00757 ThiF_MoeB_HesA_family 51.3 79 0.0017 31.1 8.5 67 303-380 76-142 (228)
349 cd03174 DRE_TIM_metallolyase D 51.0 1.8E+02 0.004 28.5 11.1 133 279-429 77-239 (265)
350 cd00950 DHDPS Dihydrodipicolin 51.0 79 0.0017 31.9 8.6 96 334-439 28-126 (284)
351 PRK01130 N-acetylmannosamine-6 51.0 46 0.001 32.4 6.7 66 278-348 128-204 (221)
352 COG0069 GltB Glutamate synthas 50.9 56 0.0012 36.4 7.9 149 245-414 237-402 (485)
353 PRK08195 4-hyroxy-2-oxovalerat 50.8 3.3E+02 0.0071 28.8 17.0 146 274-438 22-186 (337)
354 PRK00208 thiG thiazole synthas 50.5 3E+02 0.0065 28.3 12.8 86 340-441 145-230 (250)
355 PF01645 Glu_synthase: Conserv 50.4 64 0.0014 34.8 8.1 139 258-415 148-303 (368)
356 PRK08639 threonine dehydratase 50.2 2.8E+02 0.0061 30.0 13.2 117 365-505 87-214 (420)
357 PRK12344 putative alpha-isopro 50.2 4.2E+02 0.009 29.8 18.0 160 274-438 24-200 (524)
358 PF00701 DHDPS: Dihydrodipicol 50.2 95 0.002 31.5 9.1 99 333-441 28-129 (289)
359 cd01487 E1_ThiF_like E1_ThiF_l 50.1 86 0.0019 29.7 8.2 67 304-381 54-121 (174)
360 cd02911 arch_FMN Archeal FMN-b 49.9 1.4E+02 0.0031 29.7 10.1 95 298-415 122-220 (233)
361 cd04740 DHOD_1B_like Dihydroor 49.6 3E+02 0.0064 27.9 12.7 87 317-415 89-186 (296)
362 PF00677 Lum_binding: Lumazine 49.5 64 0.0014 27.2 6.5 55 208-264 20-82 (85)
363 TIGR00693 thiE thiamine-phosph 49.5 2.3E+02 0.005 26.7 12.0 123 279-437 16-149 (196)
364 PRK05437 isopentenyl pyrophosp 49.5 2.6E+02 0.0057 29.7 12.5 131 267-415 125-290 (352)
365 PRK07048 serine/threonine dehy 49.4 2.5E+02 0.0054 29.0 12.2 116 365-505 86-207 (321)
366 KOG2550 IMP dehydrogenase/GMP 49.1 30 0.00064 37.9 5.3 46 114-159 244-289 (503)
367 cd00452 KDPG_aldolase KDPG and 48.5 2.1E+02 0.0045 27.2 10.7 105 278-418 65-174 (190)
368 TIGR01037 pyrD_sub1_fam dihydr 48.4 3.1E+02 0.0068 27.9 14.6 142 260-416 6-190 (300)
369 PRK08610 fructose-bisphosphate 48.4 2.3E+02 0.005 29.5 11.6 117 317-438 77-202 (286)
370 COG0352 ThiE Thiamine monophos 48.4 2.9E+02 0.0063 27.5 12.1 132 281-437 73-208 (211)
371 cd02911 arch_FMN Archeal FMN-b 48.4 46 0.00099 33.2 6.3 60 282-348 158-222 (233)
372 PRK13962 bifunctional phosphog 48.4 1.1E+02 0.0023 35.6 9.9 258 123-446 42-319 (645)
373 PRK03910 D-cysteine desulfhydr 48.1 2.6E+02 0.0057 29.0 12.2 126 365-505 80-218 (331)
374 PRK12290 thiE thiamine-phospha 48.1 1.7E+02 0.0036 32.4 10.9 134 280-437 268-414 (437)
375 cd00755 YgdL_like Family of ac 48.1 69 0.0015 32.1 7.5 86 303-403 66-152 (231)
376 TIGR00542 hxl6Piso_put hexulos 48.0 3E+02 0.0064 27.5 12.7 102 279-380 19-152 (279)
377 PRK09195 gatY tagatose-bisphos 47.7 2.2E+02 0.0048 29.6 11.3 129 304-438 63-201 (284)
378 PRK09140 2-dehydro-3-deoxy-6-p 47.6 1.1E+02 0.0023 30.1 8.6 64 278-349 113-182 (206)
379 TIGR00742 yjbN tRNA dihydrouri 47.6 49 0.0011 34.7 6.6 66 281-351 146-228 (318)
380 cd03332 LMO_FMN L-Lactate 2-mo 47.5 55 0.0012 35.4 7.1 66 278-350 263-341 (383)
381 PRK14045 1-aminocyclopropane-1 47.5 2.6E+02 0.0056 29.1 12.0 124 365-505 86-219 (329)
382 cd00954 NAL N-Acetylneuraminic 47.4 1.1E+02 0.0024 31.2 9.0 95 333-438 27-126 (288)
383 TIGR01275 ACC_deam_rel pyridox 47.3 3.3E+02 0.0072 27.8 12.6 123 365-504 72-203 (311)
384 PRK06342 transcription elongat 47.2 1E+02 0.0022 29.2 8.2 122 66-241 25-159 (160)
385 PRK13398 3-deoxy-7-phosphohept 47.1 2.5E+02 0.0055 28.7 11.6 121 277-414 99-230 (266)
386 PRK06110 hypothetical protein; 46.9 2.8E+02 0.0061 28.7 12.1 114 366-505 85-204 (322)
387 cd00959 DeoC 2-deoxyribose-5-p 46.8 1.2E+02 0.0026 29.3 8.9 102 392-502 66-179 (203)
388 PTZ00344 pyridoxal kinase; Pro 46.8 1.1E+02 0.0024 31.2 9.0 111 270-381 53-182 (296)
389 PRK05886 yajC preprotein trans 46.7 45 0.00098 29.9 5.3 43 215-258 33-75 (109)
390 KOG3111 D-ribulose-5-phosphate 46.6 3.2E+02 0.0068 27.4 14.3 141 279-439 77-221 (224)
391 cd08564 GDPD_GsGDE_like Glycer 46.5 2.5E+02 0.0053 28.1 11.3 55 361-431 210-264 (265)
392 PF00582 Usp: Universal stress 46.5 67 0.0014 26.8 6.3 40 463-503 90-139 (140)
393 PRK11815 tRNA-dihydrouridine s 46.3 55 0.0012 34.4 6.8 65 282-351 157-238 (333)
394 cd04729 NanE N-acetylmannosami 46.3 60 0.0013 31.6 6.7 65 279-348 133-208 (219)
395 PRK05567 inosine 5'-monophosph 46.2 47 0.001 36.7 6.6 50 109-158 216-265 (486)
396 TIGR03217 4OH_2_O_val_ald 4-hy 46.0 3.9E+02 0.0084 28.2 14.7 147 273-438 20-185 (333)
397 TIGR02991 ectoine_eutB ectoine 46.0 3.6E+02 0.0079 27.9 12.9 116 365-505 81-202 (317)
398 COG4043 Preprotein translocase 45.9 26 0.00057 31.1 3.6 31 211-242 25-55 (111)
399 PRK05690 molybdopterin biosynt 45.9 1E+02 0.0022 30.8 8.4 67 303-380 87-153 (245)
400 cd04501 SGNH_hydrolase_like_4 45.8 45 0.00098 30.6 5.5 40 342-381 64-103 (183)
401 PRK04452 acetyl-CoA decarbonyl 45.6 2.3E+02 0.0049 30.0 11.1 149 276-438 136-312 (319)
402 cd04736 MDH_FMN Mandelate dehy 45.5 1.3E+02 0.0029 32.2 9.6 93 300-414 224-317 (361)
403 PF11213 DUF3006: Protein of u 45.3 47 0.001 27.1 4.9 42 192-236 8-50 (71)
404 smart00729 Elp3 Elongator prot 45.3 1.8E+02 0.0039 26.4 9.5 44 118-161 95-147 (216)
405 PF01261 AP_endonuc_2: Xylose 45.3 51 0.0011 30.5 5.8 98 282-379 1-130 (213)
406 PF04055 Radical_SAM: Radical 45.3 1.4E+02 0.0031 25.9 8.5 53 109-161 76-138 (166)
407 cd00952 CHBPH_aldolase Trans-o 45.3 1.4E+02 0.0031 30.9 9.6 96 334-439 36-134 (309)
408 TIGR01303 IMP_DH_rel_1 IMP deh 45.1 34 0.00074 37.9 5.2 50 109-158 213-262 (475)
409 TIGR01304 IMP_DH_rel_2 IMP deh 45.0 3.5E+02 0.0075 29.2 12.6 110 281-417 104-217 (369)
410 PRK08644 thiamine biosynthesis 44.9 1.1E+02 0.0025 29.9 8.4 67 304-381 83-150 (212)
411 PRK00073 pgk phosphoglycerate 44.9 4E+02 0.0086 29.1 13.0 259 123-446 39-315 (389)
412 PRK08526 threonine dehydratase 44.7 3.1E+02 0.0067 29.7 12.4 116 365-505 82-203 (403)
413 PRK11840 bifunctional sulfur c 44.6 4.1E+02 0.0088 28.3 12.8 83 342-440 221-303 (326)
414 PRK05585 yajC preprotein trans 44.6 51 0.0011 29.3 5.3 42 215-257 47-88 (106)
415 PLN02979 glycolate oxidase 44.3 1.5E+02 0.0032 32.0 9.7 93 300-415 211-307 (366)
416 TIGR03425 urea_degr_2 urea car 44.0 52 0.0011 33.3 5.9 55 187-241 14-82 (233)
417 TIGR00695 uxuA mannonate dehyd 44.0 56 0.0012 35.5 6.5 86 277-381 11-103 (394)
418 cd07937 DRE_TIM_PC_TC_5S Pyruv 43.7 3.7E+02 0.008 27.4 12.8 72 362-438 119-191 (275)
419 cd04732 HisA HisA. Phosphorib 43.6 3.1E+02 0.0068 26.5 11.4 148 278-438 30-189 (234)
420 cd06556 ICL_KPHMT Members of t 43.5 3.6E+02 0.0078 27.2 15.0 130 273-414 16-175 (240)
421 cd07938 DRE_TIM_HMGL 3-hydroxy 43.5 3.7E+02 0.0081 27.4 14.0 164 261-437 9-190 (274)
422 cd04735 OYE_like_4_FMN Old yel 43.3 2E+02 0.0042 30.4 10.4 131 272-415 132-313 (353)
423 PRK15116 sulfur acceptor prote 43.2 81 0.0018 32.4 7.3 87 303-404 85-172 (268)
424 COG0042 tRNA-dihydrouridine sy 42.9 63 0.0014 34.0 6.6 69 281-352 157-234 (323)
425 PRK07535 methyltetrahydrofolat 42.6 49 0.0011 33.7 5.6 55 123-180 28-82 (261)
426 cd00423 Pterin_binding Pterin 42.4 86 0.0019 31.5 7.3 54 123-179 27-88 (258)
427 PF01081 Aldolase: KDPG and KH 42.2 1.1E+02 0.0023 30.1 7.7 46 362-421 89-134 (196)
428 PRK05638 threonine synthase; V 42.2 2.7E+02 0.0058 30.4 11.5 103 366-493 127-230 (442)
429 cd07943 DRE_TIM_HOA 4-hydroxy- 42.1 3.7E+02 0.008 26.9 16.7 149 275-439 20-184 (263)
430 PF07679 I-set: Immunoglobulin 42.1 1.5E+02 0.0033 23.6 7.5 67 186-254 8-79 (90)
431 PRK12738 kbaY tagatose-bisphos 42.1 3E+02 0.0065 28.7 11.2 129 304-438 63-201 (286)
432 PRK11750 gltB glutamate syntha 41.9 55 0.0012 41.1 6.7 136 260-414 943-1095(1485)
433 PRK13396 3-deoxy-7-phosphohept 41.8 3.9E+02 0.0084 28.7 12.3 99 303-425 153-255 (352)
434 cd08582 GDPD_like_2 Glyceropho 41.8 3.4E+02 0.0073 26.4 11.7 40 362-414 189-228 (233)
435 PRK05835 fructose-bisphosphate 41.7 4.2E+02 0.0091 27.9 12.3 118 317-438 74-203 (307)
436 cd05722 Ig1_Neogenin First imm 41.5 1.2E+02 0.0027 24.9 7.1 73 187-259 8-89 (95)
437 PRK02083 imidazole glycerol ph 41.5 74 0.0016 31.7 6.6 86 279-377 156-251 (253)
438 KOG3974 Predicted sugar kinase 41.3 1.2E+02 0.0027 31.4 8.1 112 285-406 53-176 (306)
439 TIGR00167 cbbA ketose-bisphosp 41.3 3.4E+02 0.0074 28.2 11.6 119 316-438 76-205 (288)
440 TIGR01740 pyrF orotidine 5'-ph 41.3 3.4E+02 0.0075 26.3 12.6 50 282-331 69-118 (213)
441 PRK11197 lldD L-lactate dehydr 41.1 67 0.0015 34.7 6.6 95 278-376 255-365 (381)
442 COG0800 Eda 2-keto-3-deoxy-6-p 41.0 2.2E+02 0.0047 28.5 9.6 105 292-414 15-132 (211)
443 COG1862 YajC Preprotein transl 40.9 58 0.0013 28.6 5.0 43 214-257 37-79 (97)
444 cd08563 GDPD_TtGDE_like Glycer 40.8 1.6E+02 0.0034 28.6 8.7 40 362-414 188-227 (230)
445 PF13473 Cupredoxin_1: Cupredo 40.8 52 0.0011 28.2 4.7 42 185-226 34-75 (104)
446 PRK12330 oxaloacetate decarbox 40.8 5.8E+02 0.012 28.8 14.7 152 260-430 84-250 (499)
447 TIGR00381 cdhD CO dehydrogenas 40.6 5E+02 0.011 28.4 12.9 128 287-440 151-300 (389)
448 PF05690 ThiG: Thiazole biosyn 40.3 1.2E+02 0.0025 31.1 7.7 84 340-439 145-228 (247)
449 PLN02898 HMP-P kinase/thiamin- 40.3 3.3E+02 0.0072 30.1 12.1 129 283-439 361-499 (502)
450 PF01116 F_bP_aldolase: Fructo 40.2 3E+02 0.0066 28.5 11.0 119 316-438 72-203 (287)
451 TIGR02079 THD1 threonine dehyd 40.1 5.1E+02 0.011 28.0 13.1 117 365-505 78-203 (409)
452 cd07938 DRE_TIM_HMGL 3-hydroxy 40.0 4.2E+02 0.0092 27.0 13.3 137 279-431 76-250 (274)
453 KOG0538 Glycolate oxidase [Ene 40.0 95 0.002 33.0 7.1 64 281-348 236-309 (363)
454 PRK06106 nicotinate-nucleotide 40.0 69 0.0015 33.3 6.2 62 278-347 203-267 (281)
455 cd02940 DHPD_FMN Dihydropyrimi 39.9 3.5E+02 0.0077 27.7 11.5 47 360-416 153-201 (299)
456 cd04724 Tryptophan_synthase_al 39.9 3.5E+02 0.0076 27.0 11.1 118 280-415 95-215 (242)
457 TIGR03096 nitroso_cyanin nitro 39.8 66 0.0014 29.9 5.5 17 186-202 61-77 (135)
458 PF09347 DUF1989: Domain of un 39.8 58 0.0013 31.1 5.3 56 187-242 11-80 (166)
459 PRK02412 aroD 3-dehydroquinate 39.8 4.1E+02 0.0088 26.8 13.4 137 279-435 98-249 (253)
460 PLN02979 glycolate oxidase 39.7 1.1E+02 0.0024 32.9 7.9 95 278-376 233-343 (366)
461 PRK09427 bifunctional indole-3 39.6 62 0.0014 35.7 6.2 71 277-353 167-245 (454)
462 PLN02535 glycolate oxidase 39.5 2.1E+02 0.0044 30.9 9.9 96 300-418 211-310 (364)
463 cd02933 OYE_like_FMN Old yello 39.5 3.8E+02 0.0082 28.3 11.8 125 273-415 141-314 (338)
464 TIGR00196 yjeF_cterm yjeF C-te 39.4 1.4E+02 0.003 30.0 8.2 84 284-384 46-129 (272)
465 cd00019 AP2Ec AP endonuclease 39.4 2.2E+02 0.0049 28.3 9.8 100 279-379 13-141 (279)
466 PRK10425 DNase TatD; Provision 39.3 3.9E+02 0.0085 27.0 11.5 100 278-381 16-128 (258)
467 PRK05597 molybdopterin biosynt 39.0 1.4E+02 0.0031 31.6 8.6 67 303-380 83-149 (355)
468 TIGR00875 fsa_talC_mipB fructo 38.9 96 0.0021 30.8 6.8 61 279-345 112-184 (213)
469 PRK14852 hypothetical protein; 38.8 1.1E+02 0.0024 37.1 8.4 71 303-382 387-457 (989)
470 cd00537 MTHFR Methylenetetrahy 38.7 63 0.0014 32.6 5.7 65 276-340 147-211 (274)
471 PRK08649 inosine 5-monophospha 38.7 2.8E+02 0.0061 29.8 10.8 83 318-415 132-215 (368)
472 PRK12857 fructose-1,6-bisphosp 38.7 4.7E+02 0.01 27.1 13.5 155 279-438 7-201 (284)
473 PRK07107 inosine 5-monophospha 38.6 51 0.0011 36.9 5.3 50 108-158 230-279 (502)
474 PF01207 Dus: Dihydrouridine s 38.5 45 0.00098 34.6 4.7 68 279-351 141-218 (309)
475 PRK14024 phosphoribosyl isomer 38.4 45 0.00098 33.2 4.5 73 281-359 151-235 (241)
476 KOG2335 tRNA-dihydrouridine sy 38.1 88 0.0019 33.6 6.7 90 280-376 159-269 (358)
477 PRK00865 glutamate racemase; P 38.0 2.1E+02 0.0046 28.8 9.4 121 282-425 60-190 (261)
478 PRK08206 diaminopropionate amm 38.0 4.2E+02 0.0091 28.6 12.1 123 365-505 130-264 (399)
479 PRK10550 tRNA-dihydrouridine s 37.9 76 0.0017 33.1 6.3 63 281-352 153-230 (312)
480 PF02599 CsrA: Global regulato 37.9 70 0.0015 25.2 4.5 29 222-251 7-35 (54)
481 PRK03512 thiamine-phosphate py 37.8 4E+02 0.0087 26.1 11.8 133 280-436 70-207 (211)
482 PLN02334 ribulose-phosphate 3- 37.8 4E+02 0.0087 26.1 14.7 130 280-437 24-171 (229)
483 PF01079 Hint: Hint module; I 37.6 1.4E+02 0.0029 29.8 7.7 43 187-229 68-114 (217)
484 PRK04147 N-acetylneuraminate l 37.4 2E+02 0.0044 29.3 9.2 96 333-439 30-130 (293)
485 PRK00748 1-(5-phosphoribosyl)- 37.4 3.9E+02 0.0085 25.8 12.6 128 277-424 84-229 (233)
486 PF01180 DHO_dh: Dihydroorotat 37.3 1.8E+02 0.004 29.6 8.9 145 277-440 112-293 (295)
487 cd08579 GDPD_memb_like Glycero 37.1 1.9E+02 0.0042 27.9 8.6 42 360-414 176-217 (220)
488 PLN02550 threonine dehydratase 36.9 4.9E+02 0.011 30.0 12.8 116 365-505 171-293 (591)
489 PRK06852 aldolase; Validated 36.8 83 0.0018 33.1 6.3 70 283-355 195-274 (304)
490 PRK08072 nicotinate-nucleotide 36.8 1E+02 0.0023 31.8 6.9 65 275-347 194-261 (277)
491 TIGR00853 pts-lac PTS system, 36.7 1.3E+02 0.0028 25.8 6.5 64 302-380 18-81 (95)
492 PRK08329 threonine synthase; V 36.5 4.8E+02 0.01 27.4 12.1 103 366-493 119-223 (347)
493 cd01310 TatD_DNAse TatD like p 36.1 3.7E+02 0.008 25.7 10.4 99 280-382 19-129 (251)
494 TIGR02660 nifV_homocitr homoci 36.1 5.5E+02 0.012 27.2 14.5 133 279-430 75-235 (365)
495 PRK05283 deoxyribose-phosphate 36.0 3.6E+02 0.0078 27.7 10.6 148 272-437 21-189 (257)
496 PF04028 DUF374: Domain of unk 35.9 2.2E+02 0.0047 23.7 7.4 49 119-173 18-67 (74)
497 COG0821 gcpE 1-hydroxy-2-methy 35.9 5.9E+02 0.013 27.5 20.1 207 282-505 42-265 (361)
498 cd08562 GDPD_EcUgpQ_like Glyce 35.8 1.9E+02 0.0042 27.8 8.4 40 362-414 187-226 (229)
499 PRK09989 hypothetical protein; 35.8 4.4E+02 0.0095 26.0 12.0 162 259-430 3-195 (258)
500 COG2070 Dioxygenases related t 35.8 3.2E+02 0.0069 29.0 10.5 113 278-413 92-211 (336)
No 1
>PLN02623 pyruvate kinase
Probab=100.00 E-value=9.9e-126 Score=1020.97 Aligned_cols=502 Identities=84% Similarity=1.204 Sum_probs=459.6
Q ss_pred chhhhhhhccccccccCCCchhhhhhhccCCCcccccccccccccceeeeeecccchhcc--ccCCCCeeeecCCCCccc
Q 010610 2 AQVVATRSIQSSFMCPASGSAQERASEKLKPSSFASTVLSREEKKRVTLVRKSTKISAQK--ATRVEPEVVPVSPEDVPK 79 (506)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 79 (506)
+++..++|+.++++++.+|+... ..+.|.+|+.+++...+..+.++..+......+. .++++++++|+||||+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (581)
T PLN02623 3 AQVVATRSIDSSILSSSSGSVSL---DLLSPLSFASKVLGSEARARRRVAVRRRAVTAASLRSKSQETEVIPVSPEDGGA 79 (581)
T ss_pred cccccccccccccccCCCCcccc---cccccccccccccCchhhhhccccccccchhhhhhhccccCcceeecccccccc
Confidence 45555678888888877776443 3568888888887766665555555544444443 788999999999999775
Q ss_pred --cccccccccccccccccccccccCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHH
Q 010610 80 --RDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK 157 (506)
Q Consensus 80 --~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir 157 (506)
++++.+.+.+++.++.++.+||+.|..+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr 159 (581)
T PLN02623 80 NFVEDNEEVLLEIQQLGETAVGMWSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK 159 (581)
T ss_pred ccccccccccchhhHHHhhhhhhcCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEeecCCCeeEEeccCCCeEecCCCEEEEEEecCCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEE
Q 010610 158 EYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLL 237 (506)
Q Consensus 158 ~~~~~~~~~~i~Il~DL~GPkIRtG~l~~~i~Lk~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~ 237 (506)
+++++.++++++||+||||||||+|.+++++.|++||+|+|+.+...++++.++++|++|++++++||+||+|||+|.|+
T Consensus 160 ~~~~~~~~~~iaIl~Dl~GPkIRig~~~~~i~l~~G~~v~lt~~~~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~ 239 (581)
T PLN02623 160 EYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLA 239 (581)
T ss_pred HHHHHcCCCceEEEecCCCCceecccCCCCEEecCCCEEEEecCccCCCCCEEeechHHHHhhCCCCCEEEEeCCeEEEE
Confidence 99999765999999999999999999988999999999999988667888899999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeeCcEeCCCCccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCC
Q 010610 238 VKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD 317 (506)
Q Consensus 238 V~~~~~~~v~~~V~~gG~L~s~KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~ 317 (506)
|++++++.++|+|++||.|+++||||+||+.+++|+|||||++||+|++++++|||++|||++++||+++++|+++.|.+
T Consensus 240 V~~~~~~~v~~~V~~gG~L~s~KgvNlpg~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~ 319 (581)
T PLN02623 240 VKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNAD 319 (581)
T ss_pred EEEEECCEEEEEEEeceEecCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhh
Q 010610 318 IHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE 397 (506)
Q Consensus 318 i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAE 397 (506)
+.||+||||++||+|||||++.+|||||||||||+++|+++|+.+|++|+++|+++|||+|+||||||||+++|.|||||
T Consensus 320 ~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAE 399 (581)
T PLN02623 320 IHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAE 399 (581)
T ss_pred ceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCce
Q 010610 398 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS 477 (506)
Q Consensus 398 v~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~ 477 (506)
++|++|++.+|+|++|||+||+.|+||+|||++|++||+++|+.+++...+..+......+..+++|.+|+++|+.++++
T Consensus 400 v~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~ 479 (581)
T PLN02623 400 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTS 479 (581)
T ss_pred HHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999987654322211111122356789999999999999999
Q ss_pred EEEEcCChHHHHHHHhhCCCCeEEEEeCC
Q 010610 478 IVVFTRTGFMAILLSHYRPSGTIFAFTNE 506 (506)
Q Consensus 478 Iiv~T~sG~tA~~lS~~RP~~pIia~T~~ 506 (506)
||+||+||+||+++|||||+|||||+|++
T Consensus 480 Ivv~T~sG~tA~~lSr~RP~~pI~avT~~ 508 (581)
T PLN02623 480 IIVFTRTGFMAILLSHYRPSGTIFAFTNE 508 (581)
T ss_pred EEEECCCcHHHHHHHhhCCCCCEEEECCC
Confidence 99999999999999999999999999986
No 2
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=7.9e-124 Score=998.17 Aligned_cols=399 Identities=50% Similarity=0.762 Sum_probs=374.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCC
Q 010610 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (506)
Q Consensus 107 ~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~ 186 (506)
+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++++ ++++||+||||||||+|.+++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~ 102 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-FAVAVMMDTEGSEIHMGDLGG 102 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CceEEEecCCCCceEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --CeEecCCCEEEEEEecCCC--CceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCcc
Q 010610 187 --PITLTSGQEFTFTIQRGVG--SAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHL 262 (506)
Q Consensus 187 --~i~Lk~G~~v~lt~~~~~~--~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgV 262 (506)
++.|++||.|+|+.+...+ +++.++++|++|+++|++||.||+|||+|.|+|++++++.++|+|.+||.|++||||
T Consensus 103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgv 182 (509)
T PLN02762 103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANL 182 (509)
T ss_pred CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCce
Confidence 6999999999999864334 457899999999999999999999999999999999999999999999999999999
Q ss_pred cc-------CCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCC--CceEEEecCChhhhhhH
Q 010610 263 NV-------RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA--DIHVIVKIESADSIPNL 333 (506)
Q Consensus 263 nl-------p~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~--~i~IIaKIEt~~aveNl 333 (506)
|+ |++.+++|+|||||++||+|++++++|||++|||++++||.++|++|.+.|. +++||||||+++|++||
T Consensus 183 Nl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl 262 (509)
T PLN02762 183 TFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNL 262 (509)
T ss_pred eeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999998875 79999999999999999
Q ss_pred HHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeE
Q 010610 334 HSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVM 413 (506)
Q Consensus 334 deIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vm 413 (506)
|||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|
T Consensus 263 ~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavM 342 (509)
T PLN02762 263 EEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM 342 (509)
T ss_pred HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCCHHHHHHHHHHHHHHHhccccCCCCCC-----CCCcCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHH
Q 010610 414 LSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPP-----NLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFM 487 (506)
Q Consensus 414 Ls~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~-----~~~~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~t 487 (506)
||+|||+|+||+|||++|++||+++|++..+...+. ........+..+++|.+|+++|++++| +||+||+||+|
T Consensus 343 LSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~t 422 (509)
T PLN02762 343 LSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHM 422 (509)
T ss_pred EcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHH
Confidence 999999999999999999999999998642211111 100011125679999999999999999 99999999999
Q ss_pred HHHHHhhCCCCeEEEEeCC
Q 010610 488 AILLSHYRPSGTIFAFTNE 506 (506)
Q Consensus 488 A~~lS~~RP~~pIia~T~~ 506 (506)
|+++|||||.+||||+|++
T Consensus 423 A~~iSk~RP~~pIia~t~~ 441 (509)
T PLN02762 423 ASLLSRNRPDCPIFAFTDT 441 (509)
T ss_pred HHHHHhhCCCCCEEEECCC
Confidence 9999999999999999986
No 3
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=4.4e-123 Score=992.20 Aligned_cols=403 Identities=41% Similarity=0.645 Sum_probs=378.6
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEec
Q 010610 104 PTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGD 183 (506)
Q Consensus 104 ~~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~ 183 (506)
+..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.++++++|++||+|||||+|.
T Consensus 34 ~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~ 113 (513)
T PTZ00066 34 DLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGF 113 (513)
T ss_pred cccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeecc
Confidence 34579999999999999999999999999999999999999999999999999999999633999999999999999999
Q ss_pred cCC--CeEecCCCEEEEEEe-cCCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCC
Q 010610 184 LPQ--PITLTSGQEFTFTIQ-RGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRR 260 (506)
Q Consensus 184 l~~--~i~Lk~G~~v~lt~~-~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~K 260 (506)
+++ ++.|++||.|+|+.+ ...++++.++++|++|++++++||+||+|||+|.|+|++++++.++|+|++||.|+++|
T Consensus 114 ~~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~K 193 (513)
T PTZ00066 114 LKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERK 193 (513)
T ss_pred cCCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCc
Confidence 975 699999999999987 34567789999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCCCCCCccCHHHh-HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh
Q 010610 261 HLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (506)
Q Consensus 261 gVnlp~~~~~lp~ltekD~~dI-~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~ 339 (506)
|||+||+.+++|+||+||++|| +|++++|+|||++|||++++||.++|++|++.|.+++||||||+++|++|||||+++
T Consensus 194 gvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~ 273 (513)
T PTZ00066 194 NMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAE 273 (513)
T ss_pred ccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999998 899999999999999999999999999999988899999999999999999999999
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecccc
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA 419 (506)
+|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||
T Consensus 274 sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA 353 (513)
T PTZ00066 274 SDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETA 353 (513)
T ss_pred cCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCc--CcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCC
Q 010610 420 HGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQ--AFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRP 496 (506)
Q Consensus 420 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP 496 (506)
.|+||+|||+||++||+++|+.+++...|..... ....+..+++|.+|+++|++++| +||+||+||+||+++|||||
T Consensus 354 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP 433 (513)
T PTZ00066 354 NGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRP 433 (513)
T ss_pred CCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCC
Confidence 9999999999999999999987554322221111 11123578999999999999999 99999999999999999999
Q ss_pred CCeEEEEeCC
Q 010610 497 SGTIFAFTNE 506 (506)
Q Consensus 497 ~~pIia~T~~ 506 (506)
+|||||+|++
T Consensus 434 ~~pIia~t~~ 443 (513)
T PTZ00066 434 SCTILALSAS 443 (513)
T ss_pred CCCEEEECCC
Confidence 9999999986
No 4
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=1.2e-121 Score=981.90 Aligned_cols=400 Identities=41% Similarity=0.633 Sum_probs=376.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEecc
Q 010610 105 TVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 184 (506)
Q Consensus 105 ~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l 184 (506)
.++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.+ ++++||+||||||||+|.+
T Consensus 18 ~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g-~~i~Il~Dl~GPkIR~g~~ 96 (511)
T PLN02461 18 LRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTG-ILCAVMLDTKGPEIRTGFL 96 (511)
T ss_pred ccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEeeCCCCceecccc
Confidence 358999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC--CeEecCCCEEEEEEec-CCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEe--CCeEEEEEeeCcEeCCC
Q 010610 185 PQ--PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT--EDSVKCEVVDGGELKSR 259 (506)
Q Consensus 185 ~~--~i~Lk~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~--~~~v~~~V~~gG~L~s~ 259 (506)
++ ++.|++||.|+|+.+. ..++++.|+++|++|++++++||.||+|||+|.|+|++++ ++.++|+|.+||.|+++
T Consensus 97 ~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~ 176 (511)
T PLN02461 97 KDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGER 176 (511)
T ss_pred CCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCC
Confidence 75 5999999999999873 3467789999999999999999999999999999999987 68999999999999999
Q ss_pred CccccCCCccCCCCCCccCHHHh-HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH
Q 010610 260 RHLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (506)
Q Consensus 260 KgVnlp~~~~~lp~ltekD~~dI-~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~ 338 (506)
||||+||+.+++|+|||||++|| +|++++++|||++|||++++||+++|+++.+.+.+++|||||||++|++|||||++
T Consensus 177 Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~ 256 (511)
T PLN02461 177 KNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILA 256 (511)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999998 79999999999999999999999999999988889999999999999999999999
Q ss_pred hCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccc
Q 010610 339 ASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 418 (506)
Q Consensus 339 ~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ET 418 (506)
++|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+||
T Consensus 257 ~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ET 336 (511)
T PLN02461 257 ESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGET 336 (511)
T ss_pred hcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCc--CCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhC
Q 010610 419 AHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAF--KNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYR 495 (506)
Q Consensus 419 A~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~--~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~R 495 (506)
|+|+||+|||++|++||+++|+.+++...|....... ..+..+++|.+|+++|++++| +||+||+||+||+++||||
T Consensus 337 A~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~R 416 (511)
T PLN02461 337 AAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYR 416 (511)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhC
Confidence 9999999999999999999998765533332221111 124678999999999999999 9999999999999999999
Q ss_pred CCCeEEEEeC
Q 010610 496 PSGTIFAFTN 505 (506)
Q Consensus 496 P~~pIia~T~ 505 (506)
|+|||||+|+
T Consensus 417 P~~pIia~t~ 426 (511)
T PLN02461 417 PAVPILSVVV 426 (511)
T ss_pred CCCCEEEEec
Confidence 9999999985
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=3.5e-121 Score=972.66 Aligned_cols=397 Identities=44% Similarity=0.689 Sum_probs=375.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCC
Q 010610 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (506)
Q Consensus 107 ~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~ 186 (506)
||||||||||||+|+++|+|++|+++||||||||||||++++|+++|+++|+++++++ ++++|++||||||||+|.+++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GPkiR~g~~~~ 79 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTG-KKAAILLDTKGPEIRTMKLEG 79 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeCCCCceeccccCC
Confidence 5899999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --CeEecCCCEEEEEEec-CCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCccc
Q 010610 187 --PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (506)
Q Consensus 187 --~i~Lk~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVn 263 (506)
++.|++||.|+|+.+. ..++.+.++++|++|++++++||.||+|||+|.|+|++++++.++|+|++||.|+++||||
T Consensus 80 ~~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn 159 (470)
T PRK09206 80 GNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVN 159 (470)
T ss_pred CCeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCcee
Confidence 5999999999999874 3466789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcC-CCceEEEecCChhhhhhHHHHHHhCCE
Q 010610 264 VRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLHSIITASDG 342 (506)
Q Consensus 264 lp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~sDG 342 (506)
+||+.+++|+|||||++||+|++++|+|||++|||++++||+++++|+.+.| .++.||+||||++|++|||||++++||
T Consensus 160 ~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 160 LPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred ccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999887 589999999999999999999999999
Q ss_pred EEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCC
Q 010610 343 AMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 422 (506)
Q Consensus 343 ImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~ 422 (506)
|||||||||+|+|+++|+.+||+|+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeEE
Q 010610 423 FPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIF 501 (506)
Q Consensus 423 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP~~pIi 501 (506)
||+|||++|++||+++|..+++. +.........+..+++|.+|+++|++++| +||+||+||+||+++|||||++|||
T Consensus 320 yPveaV~~m~~I~~~~E~~~~~~--~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIi 397 (470)
T PRK09206 320 YPLEAVSIMATICERTDRVMNSR--LESNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATIL 397 (470)
T ss_pred CHHHHHHHHHHHHHHHHhhcchh--hhhhccccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEE
Confidence 99999999999999999865432 11111111135689999999999999999 9999999999999999999999999
Q ss_pred EEeCC
Q 010610 502 AFTNE 506 (506)
Q Consensus 502 a~T~~ 506 (506)
|+|+|
T Consensus 398 a~t~~ 402 (470)
T PRK09206 398 ALTTN 402 (470)
T ss_pred EECCC
Confidence 99986
No 6
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-121 Score=968.72 Aligned_cols=401 Identities=46% Similarity=0.722 Sum_probs=379.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEecc
Q 010610 105 TVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 184 (506)
Q Consensus 105 ~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l 184 (506)
.++|||||||||||+|+++|+|++|+++||||||||||||++++|++.++++|+++++++ +|++||+||||||||+|.+
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~-~~vaIl~DlkGPkIR~g~~ 80 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLG-RPVAILLDLKGPKIRTGKF 80 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhC-CceEEEEcCCCCcceeEec
Confidence 357999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-CeEecCCCEEEEEEecC--CCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCc
Q 010610 185 PQ-PITLTSGQEFTFTIQRG--VGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRH 261 (506)
Q Consensus 185 ~~-~i~Lk~G~~v~lt~~~~--~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~Kg 261 (506)
.+ .++|++||+|+|+.+.. .++++.++++|++|+++|++||+||+|||++.|+|.+++++.+.|+|.+||.|++|||
T Consensus 81 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 81 KGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred CCCcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCc
Confidence 85 69999999999998865 3456899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCC-ceEEEecCChhhhhhHHHHHHhC
Q 010610 262 LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD-IHVIVKIESADSIPNLHSIITAS 340 (506)
Q Consensus 262 Vnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~-i~IIaKIEt~~aveNldeIl~~s 340 (506)
||+||..+++|+|||||++||+|++++|+|||++|||++++|+.++|+++.+.+.. ++||||||+++||+|||||+++|
T Consensus 161 vN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~S 240 (477)
T COG0469 161 VNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEAS 240 (477)
T ss_pred eecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999877665 99999999999999999999999
Q ss_pred CEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccC
Q 010610 341 DGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 341 DGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~ 420 (506)
|||||||||||+|+|+++||.+||+||++|+.+|||||+||||||||++||+|||||++||||||+||+||+|||+|||.
T Consensus 241 DGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~ 320 (477)
T COG0469 241 DGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAA 320 (477)
T ss_pred CceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCe
Q 010610 421 GKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGT 499 (506)
Q Consensus 421 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP~~p 499 (506)
|+||+|||++|++||.++|+.+.+...+.........+..++++.+++++|..+++ +||++|.||+||+++|||||.+|
T Consensus 321 G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~p 400 (477)
T COG0469 321 GKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAP 400 (477)
T ss_pred CCCHHHHHHHHHHHHHHHhcccchhhhhhhccccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCc
Confidence 99999999999999999999876322222111222345789999999999999999 99999999999999999999999
Q ss_pred EEEEeCC
Q 010610 500 IFAFTNE 506 (506)
Q Consensus 500 Iia~T~~ 506 (506)
|||+|+|
T Consensus 401 Iia~t~~ 407 (477)
T COG0469 401 IIALTPN 407 (477)
T ss_pred EEEECCC
Confidence 9999986
No 7
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=1e-120 Score=968.69 Aligned_cols=397 Identities=39% Similarity=0.635 Sum_probs=375.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccC
Q 010610 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (506)
Q Consensus 106 ~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~ 185 (506)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||||||||+|.++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETG-RPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeeEEEeCCCCceeccccC
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-CeEecCCCEEEEEEecCCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCcccc
Q 010610 186 Q-PITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNV 264 (506)
Q Consensus 186 ~-~i~Lk~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVnl 264 (506)
+ ++.|++||+|+|+.+...++++.|+++|++|++++++||+||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 82 ~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn~ 161 (476)
T PRK06247 82 DGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSL 161 (476)
T ss_pred CCcEeccCCCEEEEEecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCcccc
Confidence 5 799999999999988666788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEE
Q 010610 265 RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM 344 (506)
Q Consensus 265 p~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGIm 344 (506)
||+.+++|.||+||++||+|++++|+|||++|||++++||+++|++++ .++.|||||||++|++|||+|++++||||
T Consensus 162 p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~---~~~~iiaKIEt~eav~nldeI~~~~DgIm 238 (476)
T PRK06247 162 PGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIEKPQAIDRLEAIVEASDAIM 238 (476)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhh---hcCeEEEEECCHHHHHhHHHHHHHcCEEE
Confidence 999999999999999999999999999999999999999999999994 47899999999999999999999999999
Q ss_pred EcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCH
Q 010610 345 VARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (506)
Q Consensus 345 IaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yP 424 (506)
|||||||+|+|+++|+.+||+|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+||
T Consensus 239 VaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yP 318 (476)
T PRK06247 239 VARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYP 318 (476)
T ss_pred EccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeEEEE
Q 010610 425 LKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIFAF 503 (506)
Q Consensus 425 veaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP~~pIia~ 503 (506)
+|||++|++||+++|+++++...+.........+..+++|.+|+++|+++++ +||+||+||+||+++|||||+|||||+
T Consensus 319 veaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~ 398 (476)
T PRK06247 319 VEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILAL 398 (476)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhcccccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEE
Confidence 9999999999999998754432221111111235678999999999999999 999999999999999999999999999
Q ss_pred eCC
Q 010610 504 TNE 506 (506)
Q Consensus 504 T~~ 506 (506)
|++
T Consensus 399 t~~ 401 (476)
T PRK06247 399 TPN 401 (476)
T ss_pred CCC
Confidence 986
No 8
>PLN02765 pyruvate kinase
Probab=100.00 E-value=1.5e-120 Score=973.99 Aligned_cols=397 Identities=32% Similarity=0.509 Sum_probs=371.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCC-
Q 010610 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ- 186 (506)
Q Consensus 108 r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~- 186 (506)
|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++++ ++++||+||||||||+|.+++
T Consensus 28 ~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~~ 106 (526)
T PLN02765 28 ALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTK-KLCAVMLDTVGPELQVINKTEK 106 (526)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEecCCCCceeeeecCCC
Confidence 459999999999999999999999999999999999999999999999999999998 999999999999999999974
Q ss_pred CeEecCCCEEEEEEecC-CCCceEEEeccchhhhhcCCCCEEEEeCC--------eEEEEEEEEeCCeEEEEEeeCcEeC
Q 010610 187 PITLTSGQEFTFTIQRG-VGSAECVSVNYDDFVNDVEVGDMLLVDGG--------MMSLLVKSKTEDSVKCEVVDGGELK 257 (506)
Q Consensus 187 ~i~Lk~G~~v~lt~~~~-~~~~~~i~v~~~~l~~~v~~Gd~IliDDG--------~i~l~V~~~~~~~v~~~V~~gG~L~ 257 (506)
++.|++||+|+|+.+.. .++.+.|+++|++|++++++||+||+||| +|.|+|++++++.++|+|++||.|+
T Consensus 107 ~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~gG~L~ 186 (526)
T PLN02765 107 PISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATLA 186 (526)
T ss_pred cEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEECCEEEEEEEeCcEEC
Confidence 79999999999998743 46778999999999999999999999988 8999999999999999999999999
Q ss_pred C-CCccccCCCccCCCCCCccCHHHh-HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCC-CceEEEecCChhhhhhHH
Q 010610 258 S-RRHLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLH 334 (506)
Q Consensus 258 s-~KgVnlp~~~~~lp~ltekD~~dI-~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~-~i~IIaKIEt~~aveNld 334 (506)
+ +||||+||+.+++|+||+||++|| +|++++++|||++|||++++||.++|+++.+.|. ++.||||||+++|++|||
T Consensus 187 s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~ 266 (526)
T PLN02765 187 GSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFD 266 (526)
T ss_pred CCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 9 489999999999999999999999 6999999999999999999999999999998875 899999999999999999
Q ss_pred HHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 335 SIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 335 eIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+ |||||||++||+|||||++||||||+||+||+||
T Consensus 267 eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavML 345 (526)
T PLN02765 267 EILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILL 345 (526)
T ss_pred HHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEe
Confidence 999999999999999999999999999999999999999999996 9999999999999999999999999999999999
Q ss_pred eccccCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCc--CcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHH
Q 010610 415 SGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQ--AFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILL 491 (506)
Q Consensus 415 s~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~l 491 (506)
|+|||+|+||+|||++|++||+++|+.+++...+..... ..+.+..+++|.+|+++|++++| +|||||+||+||+++
T Consensus 346 SgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~i 425 (526)
T PLN02765 346 GAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARLI 425 (526)
T ss_pred cchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHHH
Confidence 999999999999999999999999986544322221111 01113468999999999999999 999999999999999
Q ss_pred HhhCCCCeEEEEe-CC
Q 010610 492 SHYRPSGTIFAFT-NE 506 (506)
Q Consensus 492 S~~RP~~pIia~T-~~ 506 (506)
|||||+|||||+| ++
T Consensus 426 sk~RP~~pIla~t~~~ 441 (526)
T PLN02765 426 AKYRPTMPVLSVVIPR 441 (526)
T ss_pred HhhCCCCCEEEEecCc
Confidence 9999999999999 53
No 9
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=6.6e-119 Score=978.51 Aligned_cols=400 Identities=40% Similarity=0.679 Sum_probs=378.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEecc
Q 010610 105 TVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 184 (506)
Q Consensus 105 ~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l 184 (506)
..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++|+||+||||||||+|.+
T Consensus 5 ~~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~-~~i~i~~Dl~GpkiR~g~~ 83 (590)
T PRK06354 5 DLMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLG-KTVGILQDLQGPKIRLGRF 83 (590)
T ss_pred CCCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCEEEEeeCCCCceecccc
Confidence 357999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-CeEecCCCEEEEEEecCCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEe--CCeEEEEEeeCcEeCCCCc
Q 010610 185 PQ-PITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT--EDSVKCEVVDGGELKSRRH 261 (506)
Q Consensus 185 ~~-~i~Lk~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~--~~~v~~~V~~gG~L~s~Kg 261 (506)
++ ++.|++||+|+|+.+...++++.|+++|++|++++++||.||+|||+|.|+|++++ ++.++|+|++||.|+++||
T Consensus 84 ~~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kg 163 (590)
T PRK06354 84 EDGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKG 163 (590)
T ss_pred CCCcEEecCCCEEEEEecccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCc
Confidence 75 79999999999998865678889999999999999999999999999999999988 8999999999999999999
Q ss_pred cccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHh-cCCCceEEEecCChhhhhhHHHHHHhC
Q 010610 262 LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-CGADIHVIVKIESADSIPNLHSIITAS 340 (506)
Q Consensus 262 Vnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~-~~~~i~IIaKIEt~~aveNldeIl~~s 340 (506)
||+||+.+++|+|||||++||+|++++++|||++|||++++||.++++|+.+ .+.++.||+||||++|++|+|||++++
T Consensus 164 vn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~ 243 (590)
T PRK06354 164 VNFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELC 243 (590)
T ss_pred ccccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999954 578999999999999999999999999
Q ss_pred CEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccC
Q 010610 341 DGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 341 DGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~ 420 (506)
|||||||||||+|+|+++|+.+||+|+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+
T Consensus 244 DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~ 323 (590)
T PRK06354 244 DGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAA 323 (590)
T ss_pred CEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCe
Q 010610 421 GKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGT 499 (506)
Q Consensus 421 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP~~p 499 (506)
|+||++||+||++||+++|+.+++..++..... ...+..+++|.+|+++|+++++ +||+||+||+||+++|||||+||
T Consensus 324 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~-~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~p 402 (590)
T PRK06354 324 GDYPVEAVQTMATIAVRIEKDLPYRDILSKRPE-FTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTP 402 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhhhhhhccc-cCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCC
Confidence 999999999999999999987654332221111 1235678999999999999999 99999999999999999999999
Q ss_pred EEEEeCC
Q 010610 500 IFAFTNE 506 (506)
Q Consensus 500 Iia~T~~ 506 (506)
|||+|++
T Consensus 403 I~a~t~~ 409 (590)
T PRK06354 403 ILAVTPN 409 (590)
T ss_pred EEEECCC
Confidence 9999986
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=7.5e-118 Score=948.25 Aligned_cols=399 Identities=46% Similarity=0.701 Sum_probs=378.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccC
Q 010610 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (506)
Q Consensus 106 ~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~ 185 (506)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ +|++|++||||||||+|.++
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~-~~i~I~~Dl~GpkiR~g~~~ 80 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLG-RPVAILLDLKGPKIRVGKFK 80 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeecccc
Confidence 46899999999999999999999999999999999999999999999999999999998 99999999999999999998
Q ss_pred C-CeEecCCCEEEEEEec-CCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCccc
Q 010610 186 Q-PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (506)
Q Consensus 186 ~-~i~Lk~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVn 263 (506)
+ ++.|++||+|+|+.+. ..++++.|++||++|++++++||.||+|||+|.|+|++++++.++|+|++||.|+++||||
T Consensus 81 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn 160 (465)
T PRK05826 81 EGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN 160 (465)
T ss_pred CCcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee
Confidence 5 7999999999999883 4577789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCC-CceEEEecCChhhhhhHHHHHHhCCE
Q 010610 264 VRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITASDG 342 (506)
Q Consensus 264 lp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~-~i~IIaKIEt~~aveNldeIl~~sDG 342 (506)
+||+.+++|.|||+|.++|+|++++|+|||++|||++++|++++++|+.+.|. ++.||+||||++|++|||||++++||
T Consensus 161 lp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 161 IPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred ccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred EEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCC
Q 010610 343 AMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 422 (506)
Q Consensus 343 ImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~ 422 (506)
|||||||||+++|.++++.+|++|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHHhhCCCCeE
Q 010610 423 FPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLSHYRPSGTI 500 (506)
Q Consensus 423 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-a-~Iiv~T~sG~tA~~lS~~RP~~pI 500 (506)
||++||+||++||+++|+.+++...+..+.. ...+..+++|.+|+++|++++ | +|||||+||+||+++|||||+|||
T Consensus 321 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~-~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI 399 (465)
T PRK05826 321 YPVEAVEAMARICKGAEKEFSINLSKHRLDR-QFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPI 399 (465)
T ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhccc-cccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCE
Confidence 9999999999999999987654211111111 113568999999999999999 9 999999999999999999999999
Q ss_pred EEEeCC
Q 010610 501 FAFTNE 506 (506)
Q Consensus 501 ia~T~~ 506 (506)
||+|++
T Consensus 400 ~~~t~~ 405 (465)
T PRK05826 400 FAVTRD 405 (465)
T ss_pred EEEcCC
Confidence 999986
No 11
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=7.4e-118 Score=951.41 Aligned_cols=399 Identities=46% Similarity=0.717 Sum_probs=377.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCC
Q 010610 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (506)
Q Consensus 107 ~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~ 186 (506)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++||+||||||||+|.+++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~il~Dl~GpkiR~g~~~~ 79 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTG-GPVAIALDTKGPEIRTGLFKG 79 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeecccCC
Confidence 5899999999999999999999999999999999999999999999999999999998 999999999999999999985
Q ss_pred --CeEecCCCEEEEEEec--CCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCC-eEEEEEeeCcEeCCCCc
Q 010610 187 --PITLTSGQEFTFTIQR--GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTED-SVKCEVVDGGELKSRRH 261 (506)
Q Consensus 187 --~i~Lk~G~~v~lt~~~--~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~-~v~~~V~~gG~L~s~Kg 261 (506)
++.|++||.|+|+.+. ..++.+.|+++|++|++++++||.||+|||+|.|+|++++++ .++|+|.+||.|+++||
T Consensus 80 ~~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kg 159 (480)
T cd00288 80 GKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKG 159 (480)
T ss_pred CCceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCc
Confidence 6999999999999875 357778999999999999999999999999999999999999 99999999999999999
Q ss_pred cccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCC
Q 010610 262 LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASD 341 (506)
Q Consensus 262 Vnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sD 341 (506)
||+|+..+++|+||+||++||+|++++|+|||++|||++++||+++|+|+.+.|.++.+|+||||++|++|||||++++|
T Consensus 160 in~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~D 239 (480)
T cd00288 160 VNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239 (480)
T ss_pred eEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCC
Q 010610 342 GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 421 (506)
Q Consensus 342 GImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G 421 (506)
||||||||||+++|+++|+.+|++|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|
T Consensus 240 gImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G 319 (480)
T cd00288 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKG 319 (480)
T ss_pred EEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccccCCCCCCCCCcC--cCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCC
Q 010610 422 KFPLKAVKVMHTVSLRTEATITGGAMPPNLGQA--FKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSG 498 (506)
Q Consensus 422 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~--~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP~~ 498 (506)
+||+|||+||++||+++|+.+++...+...... ...+..+++|.+|+++|+++++ +||++|.||+||+++|+|||.+
T Consensus 320 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~ 399 (480)
T cd00288 320 KYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNA 399 (480)
T ss_pred CCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCC
Confidence 999999999999999999865443222211111 1114678999999999999999 9999999999999999999999
Q ss_pred eEEEEeCC
Q 010610 499 TIFAFTNE 506 (506)
Q Consensus 499 pIia~T~~ 506 (506)
||||+|++
T Consensus 400 pIiavT~~ 407 (480)
T cd00288 400 PIIAVTRN 407 (480)
T ss_pred CEEEEcCC
Confidence 99999986
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=2.8e-110 Score=886.02 Aligned_cols=372 Identities=38% Similarity=0.599 Sum_probs=349.3
Q ss_pred CcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCC-CeEecCCCEEEEEEec---CCCCceE
Q 010610 134 MNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ-PITLTSGQEFTFTIQR---GVGSAEC 209 (506)
Q Consensus 134 m~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~-~i~Lk~G~~v~lt~~~---~~~~~~~ 209 (506)
|||||||||||++++|+++++++|++++++| ++++||+||||||||||.+++ ++.|++||+|+|+.+. ..++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~-~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELG-VNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCE
Confidence 8999999999999999999999999999998 999999999999999999975 7999999999999873 3467789
Q ss_pred EEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeC-CeEEEEEeeCcEeCCCCccccCCCccCCCCCCccCHHHhHhhHhc
Q 010610 210 VSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTE-DSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDN 288 (506)
Q Consensus 210 i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~-~~v~~~V~~gG~L~s~KgVnlp~~~~~lp~ltekD~~dI~~al~~ 288 (506)
|+++|++|++++++||.||+|||+|.|+|+++++ +.++|+|++||.|+++||||+||+.+++|.+|++|.+||+|++++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI~~ald~ 159 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ 159 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHHHHHHHC
Confidence 9999999999999999999999999999999986 699999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHH
Q 010610 289 KVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIR 368 (506)
Q Consensus 289 gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~ 368 (506)
|+|||++|||++++|+++++++++..|.++.|||||||++||+|||+|++.+|||||||||||+|+|+++|+.+||+|++
T Consensus 160 gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~ 239 (454)
T PTZ00300 160 GVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS 239 (454)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCCCC
Q 010610 369 TCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMP 448 (506)
Q Consensus 369 ~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~ 448 (506)
+|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+.+++...|
T Consensus 240 ~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~ 319 (454)
T PTZ00300 240 KCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFF 319 (454)
T ss_pred HHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865332222
Q ss_pred CCCCc--CcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeEEEEeCC
Q 010610 449 PNLGQ--AFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIFAFTNE 506 (506)
Q Consensus 449 ~~~~~--~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP~~pIia~T~~ 506 (506)
..+.. ....+..+++|.+|+++|+++++ +||+||+||+||+++|||||+|||||+|++
T Consensus 320 ~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~ 380 (454)
T PTZ00300 320 NSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTR 380 (454)
T ss_pred hhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCC
Confidence 21111 11124578999999999999999 999999999999999999999999999986
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=7.7e-110 Score=891.18 Aligned_cols=398 Identities=48% Similarity=0.748 Sum_probs=375.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCC-
Q 010610 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ- 186 (506)
Q Consensus 108 r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~- 186 (506)
|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++||+||+|||||+|.+++
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~-~~~~i~~Dl~GpkiR~g~~~~~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLG-RPVAILLDTKGPEIRTGEIKGG 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeccccCCC
Confidence 689999999999999999999999999999999999999999999999999999998 999999999999999999985
Q ss_pred CeEecCCCEEEEEEec--CCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCcccc
Q 010610 187 PITLTSGQEFTFTIQR--GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNV 264 (506)
Q Consensus 187 ~i~Lk~G~~v~lt~~~--~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVnl 264 (506)
++.|++||.|+|+.+. ..++++.|+++|++|++++++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn~ 159 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNL 159 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceeec
Confidence 7999999999999874 34677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcC-CCceEEEecCChhhhhhHHHHHHhCCEE
Q 010610 265 RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLHSIITASDGA 343 (506)
Q Consensus 265 p~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~sDGI 343 (506)
||+.+++|.||+||.+||+|++++|+|+|++|||++++||+.+++++.+.+ .++.||+||||++|++|++||++++||+
T Consensus 160 p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi 239 (473)
T TIGR01064 160 PGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGI 239 (473)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcE
Confidence 999999999999999999999999999999999999999999999998877 5899999999999999999999999999
Q ss_pred EEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCC
Q 010610 344 MVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 423 (506)
Q Consensus 344 mIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~y 423 (506)
|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.||+|||||++|++|++.+|+|++|||+||+.|+|
T Consensus 240 ~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~y 319 (473)
T TIGR01064 240 MVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKY 319 (473)
T ss_pred EEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCC--cCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeE
Q 010610 424 PLKAVKVMHTVSLRTEATITGGAMPPNLG--QAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTI 500 (506)
Q Consensus 424 PveaV~~m~~I~~~aE~~~~~~~~~~~~~--~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP~~pI 500 (506)
|+|||+||++||+++|+..++...|.... .....+..+++|.+|+++|+++++ +||+||+||+||+++|||||.+||
T Consensus 320 P~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~~PI 399 (473)
T TIGR01064 320 PVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPI 399 (473)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCCCCE
Confidence 99999999999999998654322121111 111235679999999999999999 999999999999999999999999
Q ss_pred EEEeCC
Q 010610 501 FAFTNE 506 (506)
Q Consensus 501 ia~T~~ 506 (506)
||+|+|
T Consensus 400 iAvT~~ 405 (473)
T TIGR01064 400 IAVTPN 405 (473)
T ss_pred EEEcCC
Confidence 999986
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-109 Score=872.67 Aligned_cols=417 Identities=48% Similarity=0.720 Sum_probs=394.8
Q ss_pred cccccccccccccccccccccCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHH
Q 010610 82 GEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA 161 (506)
Q Consensus 82 ~~~~~~~~~~~~~~~s~~~~~~~~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~ 161 (506)
++++|.+.|... ...|...++|||+||+||++++.|+|++|+++|||++|+|||||+|++|++.++|+|++.+
T Consensus 2 s~~~~~~~L~~~-------~~~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~ 74 (501)
T KOG2323|consen 2 SFLKHECLLSGS-------NGAPKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAIS 74 (501)
T ss_pred chhhhhhhhccc-------ccccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHh
Confidence 467888877743 1356778999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEeecCCCeeEEeccCC--CeEecCCCEEEEEEecCCC--CceEEEeccchhhhhcCCCCEEEEeCCeEEEE
Q 010610 162 QSKDNVIAIMLDTKGPEVRSGDLPQ--PITLTSGQEFTFTIQRGVG--SAECVSVNYDDFVNDVEVGDMLLVDGGMMSLL 237 (506)
Q Consensus 162 ~~~~~~i~Il~DL~GPkIRtG~l~~--~i~Lk~G~~v~lt~~~~~~--~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~ 237 (506)
.++..+++|++|++||++|||.+++ +++|++|++++||++.... ..+.+++||+++.++|++||.||+|||.+.+.
T Consensus 75 ~~~~~~~ai~LDtkGpEirtg~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~ 154 (501)
T KOG2323|consen 75 NTGALPCAIMLDTKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLI 154 (501)
T ss_pred hcCCcchhhhhccCCCeEeecccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeE
Confidence 9987779999999999999999986 8999999999999996443 35899999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeeCcEeCCCCc-cccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCC
Q 010610 238 VKSKTEDSVKCEVVDGGELKSRRH-LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA 316 (506)
Q Consensus 238 V~~~~~~~v~~~V~~gG~L~s~Kg-Vnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~ 316 (506)
|+++..+.+.|+|.|+|.++|+|| +|+||+..++|.|||||++||+|++++++|+|++||||.++|+.++|++|++.+.
T Consensus 155 V~~~~~~~~~c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~ 234 (501)
T KOG2323|consen 155 VKSVSKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKVLGESGK 234 (501)
T ss_pred EEEeecCceEEEEecCcccccccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999998899
Q ss_pred CceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChh
Q 010610 317 DIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRA 396 (506)
Q Consensus 317 ~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRA 396 (506)
+++||+|||+++|+.|+|+|+.++||+||+|||||+|+|+|+++.+||.||.+|+.+|||||+||||||||+.+|+||||
T Consensus 235 ~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRa 314 (501)
T KOG2323|consen 235 NIKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRA 314 (501)
T ss_pred cceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCc--CcCCChHHHHHHHHHHHHhhc
Q 010610 397 EVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQ--AFKNHMSEMFAYHATMMSNTL 474 (506)
Q Consensus 397 Ev~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~~av~~A~~~ 474 (506)
|++||+|||+||+||+|||||||.|+||++||++|++||.++|+.+++..+|..+.. ..+.+..+++|.+|+.+|.+.
T Consensus 315 E~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~ 394 (501)
T KOG2323|consen 315 EASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKC 394 (501)
T ss_pred chHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999988777766542 234457899999999999988
Q ss_pred Cc-eEEEEcCChHHHHHHHhhCCCCeEEEEeC
Q 010610 475 GT-SIVVFTRTGFMAILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 475 ~a-~Iiv~T~sG~tA~~lS~~RP~~pIia~T~ 505 (506)
.+ +|+|+|+||++|+++|+|||++||+++|.
T Consensus 395 ~a~aIvv~T~sg~~a~lvskyrP~~PIi~vt~ 426 (501)
T KOG2323|consen 395 LASAIVVLTKSGYTAILVSKYRPSVPIISVTR 426 (501)
T ss_pred cceEEEEEecCcccHHHHhccCCCCCEEEEec
Confidence 88 99999999999999999999999999986
No 15
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=8.7e-108 Score=843.29 Aligned_cols=330 Identities=40% Similarity=0.694 Sum_probs=319.9
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCC-C
Q 010610 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ-P 187 (506)
Q Consensus 109 ~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~-~ 187 (506)
++||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|+++ ++++||+||||||||+|.+++ +
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~-----~~vaIl~Dl~GPkIR~G~~~~~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLD-----DSIKILGDVQGPKIRLGEIKGEQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhh-----hhcceeecCCCCcceecccCCCc
Confidence 6899999999999999999999999999999999999999999999999986 358999999999999999985 6
Q ss_pred eEecCCCEEEEEEecCCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCccccCCC
Q 010610 188 ITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNVRGK 267 (506)
Q Consensus 188 i~Lk~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlp~~ 267 (506)
+.|++||.|+|+.+...++.+.++++|++|++++++||.||+|||+|.|+|++++++.+.|+|++||.|+++||||+||+
T Consensus 77 i~l~~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn~pg~ 156 (352)
T PRK06739 77 ITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGA 156 (352)
T ss_pred EEecCCCEEEEecCccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCeecccc
Confidence 99999999999988666777899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcC-CCceEEEecCChhhhhhHHHHHHhCCEEEEc
Q 010610 268 SATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLHSIITASDGAMVA 346 (506)
Q Consensus 268 ~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~sDGImIa 346 (506)
.+++|+||+||++||+|++++++|||++|||++++||.++|++|++.| .+++|||||||++|++||++|++++||||||
T Consensus 157 ~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVA 236 (352)
T PRK06739 157 IVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred cCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999876 4899999999999999999999999999999
Q ss_pred CCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHH
Q 010610 347 RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLK 426 (506)
Q Consensus 347 RGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPve 426 (506)
|||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||++
T Consensus 237 RGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPve 316 (352)
T PRK06739 237 RGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIE 316 (352)
T ss_pred CcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 010610 427 AVKVMHTVSLRTEATIT 443 (506)
Q Consensus 427 aV~~m~~I~~~aE~~~~ 443 (506)
||+||++||+++|+..+
T Consensus 317 aV~~m~~I~~~aE~~~~ 333 (352)
T PRK06739 317 SVSTLRLVSEFAEHVKK 333 (352)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999999997644
No 16
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=4.2e-109 Score=856.24 Aligned_cols=337 Identities=50% Similarity=0.813 Sum_probs=308.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCC
Q 010610 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (506)
Q Consensus 107 ~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~ 186 (506)
||||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++.++++ ++++|++||+|||||||.+++
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~-~~i~IllDl~GPkIRtg~l~~ 79 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELG-KPIAILLDLKGPKIRTGRLKD 79 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTT-TS-EEEEEE-TS-EBB-BBTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccC-CceEEEeccCCCcceeeeecc
Confidence 7999999999999999999999999999999999999999999999999999999998 999999999999999999985
Q ss_pred ---CeEecCCCEEEEEEecC---CCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCe-EEEEEeeCcEeCCC
Q 010610 187 ---PITLTSGQEFTFTIQRG---VGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDS-VKCEVVDGGELKSR 259 (506)
Q Consensus 187 ---~i~Lk~G~~v~lt~~~~---~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~-v~~~V~~gG~L~s~ 259 (506)
++.|++||+|+|+.+.. .++.+.|++||++|+++|++||+||+|||+|.|+|++++++. ++|+|.+||.|+++
T Consensus 80 g~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~i~~~v~~~G~L~~~ 159 (348)
T PF00224_consen 80 GKKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSSIKCEVLNGGKLKSR 159 (348)
T ss_dssp SSSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEEEEEEESS-EEEESS
T ss_pred ccccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcceeEEeCCCCCccCC
Confidence 69999999999998854 356789999999999999999999999999999999999999 99999999999999
Q ss_pred CccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh
Q 010610 260 RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (506)
Q Consensus 260 KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~ 339 (506)
||||+|+..+++|.||++|++||+|++++|+|||++|||++++||.++|++|.+.|.+++|||||||++|++|||+|+++
T Consensus 160 KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~ 239 (348)
T PF00224_consen 160 KGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEA 239 (348)
T ss_dssp EBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHH
T ss_pred ccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecccc
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA 419 (506)
||||||||||||+|+|+++||.+||+|+++|+++|||||+||||||||+++|.|||||++||||||+||+||+|||+|||
T Consensus 240 sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa 319 (348)
T PF00224_consen 240 SDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETA 319 (348)
T ss_dssp SSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHH
T ss_pred cCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccC
Q 010610 420 HGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 420 ~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
+|+||++||+||++|++++|+.+++
T Consensus 320 ~G~~p~~~v~~~~~i~~~~E~~~~~ 344 (348)
T PF00224_consen 320 IGKYPVEAVKTMARIIREAEKYLDY 344 (348)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHTS-H
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999998765
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=1.3e-98 Score=810.56 Aligned_cols=353 Identities=29% Similarity=0.483 Sum_probs=335.6
Q ss_pred cccccccccccccccccccCCCCCCCceEEEecC-CCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHh
Q 010610 84 FQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIG-PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQ 162 (506)
Q Consensus 84 ~~~~~~~~~~~~~s~~~~~~~~~~r~tKIi~TiG-Pss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~ 162 (506)
.+.+.+.+.+..++..++++++.+|+|||||||| |+++++++|++|+++||||||||||||++++|+++|++||+++++
T Consensus 115 ~~~~~g~~lL~~~~~~l~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~ 194 (608)
T PRK14725 115 VTFEEGDELLDEHAEALLGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEE 194 (608)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHH
Confidence 4556677778888999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeecCCCeeEEeccCC--------------------------------------------------------
Q 010610 163 SKDNVIAIMLDTKGPEVRSGDLPQ-------------------------------------------------------- 186 (506)
Q Consensus 163 ~~~~~i~Il~DL~GPkIRtG~l~~-------------------------------------------------------- 186 (506)
+| ++|+|++||+|||||||.+..
T Consensus 195 ~g-r~~~I~mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd 273 (608)
T PRK14725 195 LG-RRCRIAMDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGD 273 (608)
T ss_pred cC-CCEEEEEeCCCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCc
Confidence 98 999999999999999999863
Q ss_pred ----------------------------------------------------------CeEecCCCEEEEEEecCCC---
Q 010610 187 ----------------------------------------------------------PITLTSGQEFTFTIQRGVG--- 205 (506)
Q Consensus 187 ----------------------------------------------------------~i~Lk~G~~v~lt~~~~~~--- 205 (506)
++.|++||.++|+.+...+
T Consensus 274 ~i~~~DaRg~~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~ 353 (608)
T PRK14725 274 ELRFTDARGKKRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPA 353 (608)
T ss_pred eeeeeeccccceeeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccc
Confidence 4799999999999874332
Q ss_pred --Cce--EEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEee----CcEeCCCCccccCCCccCCCCCCcc
Q 010610 206 --SAE--CVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVD----GGELKSRRHLNVRGKSATLPSITEK 277 (506)
Q Consensus 206 --~~~--~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~----gG~L~s~KgVnlp~~~~~lp~ltek 277 (506)
+.. .|+|+|+++++++++||.||+|||+|.++|++++++.++|+|++ ||.|+++||||+||+.+++|+||+|
T Consensus 354 ~~~~~~~~i~~t~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTek 433 (608)
T PRK14725 354 QGDAPPARISCTLPEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDK 433 (608)
T ss_pred cCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHH
Confidence 344 89999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCC-CceEEEecCChhhhhhHHHHHHhC-----CEEEEcCCCcc
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITAS-----DGAMVARGDLG 351 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~-~i~IIaKIEt~~aveNldeIl~~s-----DGImIaRGDLg 351 (506)
|++||+|++++ +|||++|||++++||.+++++|.+.|. ++.||+||||++|++||++|+.++ |||||||||||
T Consensus 434 D~~dl~f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLg 512 (608)
T PRK14725 434 DLEDLAFVAKH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLA 512 (608)
T ss_pred HHHHHHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccc
Confidence 99999999999 999999999999999999999988764 799999999999999999999986 99999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHH
Q 010610 352 AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (506)
Q Consensus 352 velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m 431 (506)
+|+|+++||.+||+||++|+++|||||+||||||||++||.|||||++|||||+ |+||+||| +|+||+|||++|
T Consensus 513 vEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l 586 (608)
T PRK14725 513 VEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVL 586 (608)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999 999999999999
Q ss_pred HHHHHHHhccccC
Q 010610 432 HTVSLRTEATITG 444 (506)
Q Consensus 432 ~~I~~~aE~~~~~ 444 (506)
++|++++|.+...
T Consensus 587 ~~I~~r~e~~~~K 599 (608)
T PRK14725 587 DDILRRMEEHQRK 599 (608)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999987643
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=1.1e-96 Score=788.66 Aligned_cols=352 Identities=28% Similarity=0.464 Sum_probs=333.6
Q ss_pred cccccccccccccccccccCCCCCCCceEEEecC-CCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHh
Q 010610 84 FQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIG-PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQ 162 (506)
Q Consensus 84 ~~~~~~~~~~~~~s~~~~~~~~~~r~tKIi~TiG-Pss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~ 162 (506)
.+.+.+...+..++..+|++++.+|+|||||||| |+++++|+|++|+++||||||||||||++++|+++|+++|+++++
T Consensus 109 ~~~~~g~~~l~~~~~~l~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~ 188 (493)
T PRK08187 109 EQFFAGERLLAAHTEELFGPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERA 188 (493)
T ss_pred hhhhhHHHHHHHHHHHHcCCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3445566777888889999999999999999995 999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeecCCCeeEEeccCC---CeEecCCCEEEEEEecCCC----CceEEEeccchhhhhcCCCCEEEEeCCeEE
Q 010610 163 SKDNVIAIMLDTKGPEVRSGDLPQ---PITLTSGQEFTFTIQRGVG----SAECVSVNYDDFVNDVEVGDMLLVDGGMMS 235 (506)
Q Consensus 163 ~~~~~i~Il~DL~GPkIRtG~l~~---~i~Lk~G~~v~lt~~~~~~----~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~ 235 (506)
+| ++|+|++||+|||||||.+++ ++.|++||.|+|+.+...+ +...|+|+|++|++++++||.||+|||+|.
T Consensus 189 ~g-~~i~Il~DL~GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~ 267 (493)
T PRK08187 189 TG-RRCKILMDLAGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLG 267 (493)
T ss_pred cC-CCeEEEEeCCCCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEE
Confidence 99 999999999999999999974 4899999999999874322 356899999999999999999999999999
Q ss_pred EEEEEEeCCeEEEEEe----eCcEeCCCCccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHH
Q 010610 236 LLVKSKTEDSVKCEVV----DGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYL 311 (506)
Q Consensus 236 l~V~~~~~~~v~~~V~----~gG~L~s~KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l 311 (506)
|+|++++++.+.|+|+ +||.|+++||||||++.+++|+||++|.+||+|+++ ++|+|++|||++++||..++++|
T Consensus 268 l~V~~v~~~~v~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L 346 (493)
T PRK08187 268 ARVERVGPGGALLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAAL 346 (493)
T ss_pred EEEEEEeCCEEEEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999998 69999999999999999999999
Q ss_pred HhcC----CCceEEEecCChhhhhhHHHHHHhCC-----EEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEeh
Q 010610 312 KSCG----ADIHVIVKIESADSIPNLHSIITASD-----GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 312 ~~~~----~~i~IIaKIEt~~aveNldeIl~~sD-----GImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATq 382 (506)
.+.+ .++.||+||||++|++|+++|+.++| ||||||||||+|+|++++|.+|++|+.+|+++|||||+|||
T Consensus 347 ~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQ 426 (493)
T PRK08187 347 AARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQ 426 (493)
T ss_pred HHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEch
Confidence 8765 47999999999999999999999888 99999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhcccc
Q 010610 383 MLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (506)
Q Consensus 383 mLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~ 443 (506)
|||||++||.|||||++||||+ ||+||+||| +|+||+|||++|++|+.++|++..
T Consensus 427 mLESM~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~~~ 481 (493)
T PRK08187 427 VLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGHQH 481 (493)
T ss_pred hhHhhccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999997 999999999 999999999999999999998744
No 19
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.70 E-value=8.1e-17 Score=160.69 Aligned_cols=135 Identities=23% Similarity=0.261 Sum_probs=116.5
Q ss_pred CCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHH--------------------------HHHHhcCCCceEEEecC
Q 010610 272 PSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELK--------------------------NYLKSCGADIHVIVKIE 325 (506)
Q Consensus 272 p~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr--------------------------~~l~~~~~~i~IIaKIE 325 (506)
-.+...|...|+.++|.|+++|++|+|+|++|++++. +|++..|.++.++++||
T Consensus 67 VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IE 146 (249)
T TIGR03239 67 VRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIE 146 (249)
T ss_pred EECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEEC
Confidence 3445578899999999999999999999999999986 36666788899999999
Q ss_pred ChhhhhhHHHHHHh--CCEEEEcCCCcccCCCCC------cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhh
Q 010610 326 SADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE 397 (506)
Q Consensus 326 t~~aveNldeIl~~--sDGImIaRGDLgvelg~e------~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAE 397 (506)
|++|++|+|+|+++ .|++++|++||+.++|.. ++..+..+++.+|+++|||+++.+ +.|
T Consensus 147 t~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~---------~~~---- 213 (249)
T TIGR03239 147 SQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA---------PVE---- 213 (249)
T ss_pred CHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcC---------CCH----
Confidence 99999999999988 899999999999999863 688888999999999999998652 122
Q ss_pred cccHHHHHHhCcceeEeeccccC
Q 010610 398 VSDIAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 398 v~Dvanav~dG~D~vmLs~ETA~ 420 (506)
.+...++..|++.++++.|+..
T Consensus 214 -~~~~~~~~~G~~~~~~~~D~~~ 235 (249)
T TIGR03239 214 -ADARRYLEWGATFVAVGSDLGV 235 (249)
T ss_pred -HHHHHHHHcCCCEEEEhHHHHH
Confidence 2577889999999999877653
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.69 E-value=1.1e-16 Score=160.27 Aligned_cols=136 Identities=23% Similarity=0.302 Sum_probs=116.6
Q ss_pred CCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHH--------------------------HHHHhcCCCceEEEec
Q 010610 271 LPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELK--------------------------NYLKSCGADIHVIVKI 324 (506)
Q Consensus 271 lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr--------------------------~~l~~~~~~i~IIaKI 324 (506)
+-.+++.|...|++++|.|+++|++|||+|+++++++. +|++..|.++.++++|
T Consensus 73 lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~I 152 (256)
T PRK10558 73 VVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQI 152 (256)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEE
Confidence 34445678999999999999999999999999999984 4666778889999999
Q ss_pred CChhhhhhHHHHHHh--CCEEEEcCCCcccCCCCC------cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChh
Q 010610 325 ESADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRA 396 (506)
Q Consensus 325 Et~~aveNldeIl~~--sDGImIaRGDLgvelg~e------~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRA 396 (506)
||++|++|+++|+++ .|++|+|++||+.++|.. ++..+..+++.+|+++|||+++.. ++-
T Consensus 153 Et~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~~-----------~~~- 220 (256)
T PRK10558 153 ESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGILA-----------PVE- 220 (256)
T ss_pred CCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEcC-----------CCH-
Confidence 999999999999987 899999999999999863 588888999999999999998642 222
Q ss_pred hcccHHHHHHhCcceeEeeccccC
Q 010610 397 EVSDIAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 397 Ev~Dvanav~dG~D~vmLs~ETA~ 420 (506)
.+...++..|++.++++.|+..
T Consensus 221 --~~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 221 --ADARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred --HHHHHHHHcCCCEEEEchHHHH
Confidence 2367889999999999877653
No 21
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.66 E-value=3.9e-16 Score=157.24 Aligned_cols=132 Identities=24% Similarity=0.284 Sum_probs=113.1
Q ss_pred CccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHH---------------------------HhcCCCceEEEecCCh
Q 010610 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYL---------------------------KSCGADIHVIVKIESA 327 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l---------------------------~~~~~~i~IIaKIEt~ 327 (506)
...|...|+.++|.|+++|++|+|+|+++++++.+.. ...|.++.+|++|||+
T Consensus 76 p~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~ 155 (267)
T PRK10128 76 VEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESK 155 (267)
T ss_pred CCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCH
Confidence 3457789999999999999999999999999986544 3446789999999999
Q ss_pred hhhhhHHHHHHh--CCEEEEcCCCcccCCCCC------cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcc
Q 010610 328 DSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVS 399 (506)
Q Consensus 328 ~aveNldeIl~~--sDGImIaRGDLgvelg~e------~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~ 399 (506)
+|++|+++|+++ .|++++|++||+.++|+. ++..+.++++++|+++|||+++.. +.| .
T Consensus 156 ~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~---------~~~-----~ 221 (267)
T PRK10128 156 TALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA---------VDP-----D 221 (267)
T ss_pred HHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcC---------CCH-----H
Confidence 999999999998 799999999999999963 688888999999999999999642 122 3
Q ss_pred cHHHHHHhCcceeEeeccccC
Q 010610 400 DIAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 400 Dvanav~dG~D~vmLs~ETA~ 420 (506)
+...++..|++.+.++.|+..
T Consensus 222 ~a~~~~~~G~~~v~~g~D~~~ 242 (267)
T PRK10128 222 MAQKCLAWGANFVAVGVDTML 242 (267)
T ss_pred HHHHHHHcCCcEEEEChHHHH
Confidence 467889999999999888643
No 22
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.6e-15 Score=148.39 Aligned_cols=136 Identities=26% Similarity=0.318 Sum_probs=119.2
Q ss_pred CCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHH---------------------------HHHHhcCCCceEEE
Q 010610 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELK---------------------------NYLKSCGADIHVIV 322 (506)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr---------------------------~~l~~~~~~i~IIa 322 (506)
++-.++..|...|+..+|.|+..+.+|+|+|+|+.+++. +|+...|.++.+++
T Consensus 70 pvVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lv 149 (255)
T COG3836 70 PVVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLV 149 (255)
T ss_pred CeeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEE
Confidence 445556788999999999999999999999999999985 57778899999999
Q ss_pred ecCChhhhhhHHHHHHh--CCEEEEcCCCcccCCCCC------cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCC
Q 010610 323 KIESADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPT 394 (506)
Q Consensus 323 KIEt~~aveNldeIl~~--sDGImIaRGDLgvelg~e------~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~Pt 394 (506)
||||++|++|||+|+++ .||||||++||+.++|+. +|..+...++.+.+++||..++-+ ..|
T Consensus 150 qiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~---------~~p- 219 (255)
T COG3836 150 QIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILA---------ADP- 219 (255)
T ss_pred EEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccccc---------CCH-
Confidence 99999999999999999 899999999999999974 688888899999999999998763 233
Q ss_pred hhhcccHHHHHHhCcceeEeecccc
Q 010610 395 RAEVSDIAIAVREGADAVMLSGETA 419 (506)
Q Consensus 395 RAEv~Dvanav~dG~D~vmLs~ETA 419 (506)
.+...++..|+..+.+..||.
T Consensus 220 ----~~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 220 ----ADARRYLALGATFVAVGSDTG 240 (255)
T ss_pred ----HHHHHHHHhCCeEEEEeccHH
Confidence 357789999999998887764
No 23
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.58 E-value=6.6e-15 Score=146.95 Aligned_cols=131 Identities=22% Similarity=0.243 Sum_probs=110.3
Q ss_pred ccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHh---------------------------cCCCceEEEecCChh
Q 010610 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS---------------------------CGADIHVIVKIESAD 328 (506)
Q Consensus 276 ekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~---------------------------~~~~i~IIaKIEt~~ 328 (506)
..|..+|+.++|.|+|+|++|+|+|+++++++.++++. .|.++.+|++|||++
T Consensus 71 ~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~ 150 (249)
T TIGR02311 71 IGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETRE 150 (249)
T ss_pred CCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHH
Confidence 34566899999999999999999999999999887752 123578999999999
Q ss_pred hhhhHHHHHHh--CCEEEEcCCCcccCCCCC------cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhccc
Q 010610 329 SIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSD 400 (506)
Q Consensus 329 aveNldeIl~~--sDGImIaRGDLgvelg~e------~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~D 400 (506)
|++|+|+|+++ .|++|+|++||+.++|.. ++..+.++++.+|+.+||+.++.. ..| .+
T Consensus 151 av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~---------~~~-----~~ 216 (249)
T TIGR02311 151 ALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT---------ADP-----KL 216 (249)
T ss_pred HHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC---------CCH-----HH
Confidence 99999999987 799999999999999973 566778889999999999999753 122 34
Q ss_pred HHHHHHhCcceeEeeccccC
Q 010610 401 IAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 401 vanav~dG~D~vmLs~ETA~ 420 (506)
...++..|++.++++.|+..
T Consensus 217 ~~~~~~~G~~~~~~~~D~~~ 236 (249)
T TIGR02311 217 ARQYLKLGALFVAVGVDTTL 236 (249)
T ss_pred HHHHHHcCCCEEEEchHHHH
Confidence 66789999999999877643
No 24
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.46 E-value=8.3e-14 Score=135.79 Aligned_cols=100 Identities=25% Similarity=0.331 Sum_probs=85.5
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhc-------CCCceEEEecCChhhhhhHHHHHHh--CCEEEEcCCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITA--SDGAMVARGD 349 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~-------~~~i~IIaKIEt~~aveNldeIl~~--sDGImIaRGD 349 (506)
.+||+ +++.|+|+|++|+|+++++++++.++++.. +.++.++++|||++||+|+++|++. .|++++|++|
T Consensus 75 ~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~D 153 (221)
T PF03328_consen 75 ERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPAD 153 (221)
T ss_dssp HHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHH
T ss_pred hhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHH
Confidence 45677 999999999999999999999999998654 3568999999999999999999965 5899999999
Q ss_pred cccCCCCC------cHHHHHHHHHHHHHHcCCcEEE
Q 010610 350 LGAELPIE------EVPLLQEEIIRTCRSMGKAVIV 379 (506)
Q Consensus 350 Lgvelg~e------~V~~~Qk~II~~c~~~GkPviv 379 (506)
|+.+||.. ++..+.++++.+|+++|+|++-
T Consensus 154 ls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~ 189 (221)
T PF03328_consen 154 LSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAID 189 (221)
T ss_dssp HHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEE
Confidence 99999975 5888999999999999997654
No 25
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.29 E-value=1e-11 Score=141.62 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=119.7
Q ss_pred CCCCccCHHHhHhhH-hcCCcE--EEEccCCCHHHHHHHHHHHHhcC-----CCceEEEecCChhhhhhHHHHHHhCCEE
Q 010610 272 PSITEKDWDDIKFGV-DNKVDF--YAVSFVKDAQVVHELKNYLKSCG-----ADIHVIVKIESADSIPNLHSIITASDGA 343 (506)
Q Consensus 272 p~ltekD~~dI~~al-~~gvD~--IalSfV~saedV~~lr~~l~~~~-----~~i~IIaKIEt~~aveNldeIl~~sDGI 343 (506)
|.+-....+.|..++ +.|+.. |++|||+++++++++++.++..+ .++.++++||+++|+.|+|+|++++|++
T Consensus 609 ~~lf~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfi 688 (782)
T TIGR01418 609 EEAFRLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGF 688 (782)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEE
Confidence 334445566677888 889998 99999999999999999887543 3489999999999999999999999999
Q ss_pred EEcCCCccc-CCCC---------------CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHh
Q 010610 344 MVARGDLGA-ELPI---------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE 407 (506)
Q Consensus 344 mIaRGDLgv-elg~---------------e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~d 407 (506)
+||+.||+. .++. +.|..+.++++++|+++|||++++.+|.. ..| ..+..++..
T Consensus 689 sIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~~p-----~~~~~l~~~ 758 (782)
T TIGR01418 689 SIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----DYP-----EVVEFLVEE 758 (782)
T ss_pred EECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----CCH-----HHHHHHHHc
Confidence 999999997 4443 36888999999999999999999864331 012 235678889
Q ss_pred CcceeEeeccccCCCCHHHHHHHHHHHHHHHhc
Q 010610 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (506)
Q Consensus 408 G~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~ 440 (506)
|++.+.++. +.+..++..++++|+
T Consensus 759 G~~~ls~~~---------d~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 759 GIDSISLNP---------DAVLRTRLQVAEVEK 782 (782)
T ss_pred CCCEEEECc---------chHHHHHHHHHHhcC
Confidence 999999874 355666677777764
No 26
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.28 E-value=1.4e-11 Score=140.72 Aligned_cols=151 Identities=20% Similarity=0.212 Sum_probs=121.6
Q ss_pred CCCccCHHHhHhhHh-cCCcE--EEEccCCCHHHHHHHHHHHHhcC-----CCceEEEecCChhhhhhHHHHHHhCCEEE
Q 010610 273 SITEKDWDDIKFGVD-NKVDF--YAVSFVKDAQVVHELKNYLKSCG-----ADIHVIVKIESADSIPNLHSIITASDGAM 344 (506)
Q Consensus 273 ~ltekD~~dI~~al~-~gvD~--IalSfV~saedV~~lr~~l~~~~-----~~i~IIaKIEt~~aveNldeIl~~sDGIm 344 (506)
.+-+...+.|..+++ .|++. |++|||+++++++++++.++..+ .++.++++||+++|+.|+|+|++++|+++
T Consensus 617 ~lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~ 696 (795)
T PRK06464 617 EAFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFS 696 (795)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEE
Confidence 334456777888899 79998 99999999999999999986542 36899999999999999999999999999
Q ss_pred EcCCCccc-CCCC---------------CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhC
Q 010610 345 VARGDLGA-ELPI---------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG 408 (506)
Q Consensus 345 IaRGDLgv-elg~---------------e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG 408 (506)
||+.||+. .++. +.|..+.++++++|+++|||++++.+|... .|. .+..++..|
T Consensus 697 IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~-----~p~-----~~~~l~~~G 766 (795)
T PRK06464 697 IGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSD-----HPD-----FAEWLVEEG 766 (795)
T ss_pred ECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCC-----cHH-----HHHHHHHCC
Confidence 99999997 3442 368888999999999999999998654410 022 255788899
Q ss_pred cceeEeeccccCCCCHHHHHHHHHHHHHHHhccc
Q 010610 409 ADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 409 ~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~ 442 (506)
++.+..+. +++-.++..+.++|+.+
T Consensus 767 ~~~ls~~~---------d~~~~~k~~i~~~~~~~ 791 (795)
T PRK06464 767 IDSISLNP---------DAVVDTWLAVAEVEKKI 791 (795)
T ss_pred CCEEEEcc---------hhHHHHHHHHHHhHHHh
Confidence 99998873 45666777777777653
No 27
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.25 E-value=9.3e-12 Score=110.23 Aligned_cols=47 Identities=40% Similarity=0.555 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeEEEEeCC
Q 010610 460 SEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIFAFTNE 506 (506)
Q Consensus 460 ~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP~~pIia~T~~ 506 (506)
+|++|.+++++|+++++ +|||+|.||+||+++|||||.|||||+|++
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCc
Confidence 48999999999999999 999999999999999999999999999986
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.21 E-value=3.7e-11 Score=122.39 Aligned_cols=134 Identities=21% Similarity=0.224 Sum_probs=104.2
Q ss_pred CccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhc-------CCCceEEEecCChhhhhhHHHHHHh---CCEEE
Q 010610 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITA---SDGAM 344 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~-------~~~i~IIaKIEt~~aveNldeIl~~---sDGIm 344 (506)
|+....||+..++.|+|+|++|+|++++|++.+.+++... +.++.+++.|||++|+.|+++|+.. .|+++
T Consensus 71 ~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~ 150 (288)
T TIGR01588 71 TPFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIA 150 (288)
T ss_pred ChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEE
Confidence 3455688999999999999999999999999999887542 2468899999999999999999964 57999
Q ss_pred EcCCCcccCCCCC------cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 345 VARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 345 IaRGDLgvelg~e------~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
+|+.||+.++|.. .+..+..+++.+|+++|+++|-. -..+ .++. -.=..+..++...|+++-+.
T Consensus 151 ~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~-v~~~--~~d~---~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 151 LGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDT-VYSD--VNNE---EGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred eCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccC-CccC--cCCH---HHHHHHHHHHHHcCCCceec
Confidence 9999999999864 58889999999999999998642 1110 0000 00123455677888877554
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.16 E-value=1.7e-10 Score=127.51 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=110.3
Q ss_pred CCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHh-----------cCCCceEEEecCChhhhhhHHHHHHhC
Q 010610 272 PSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-----------CGADIHVIVKIESADSIPNLHSIITAS 340 (506)
Q Consensus 272 p~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~-----------~~~~i~IIaKIEt~~aveNldeIl~~s 340 (506)
|.+-.-..+.|..+++.|...|++|||+++++++++++.++. .+.++.+.++||++.|+.|+|+|++.+
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~v 445 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEV 445 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhC
Confidence 444445566778899999999999999999999999988764 245789999999999999999999999
Q ss_pred CEEEEcCCCccc-----C-----CCC------CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH
Q 010610 341 DGAMVARGDLGA-----E-----LPI------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA 404 (506)
Q Consensus 341 DGImIaRGDLgv-----e-----lg~------e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana 404 (506)
|+++||+.||+. + ++. +.|..+.++++++|+++||||.++..|- ..| ..+..+
T Consensus 446 Df~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a------~~p-----~~~~~l 514 (565)
T TIGR01417 446 DFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA------GDE-----RAIPLL 514 (565)
T ss_pred CEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC------CCH-----HHHHHH
Confidence 999999999987 3 442 3688899999999999999999876433 122 246788
Q ss_pred HHhCcceeEee
Q 010610 405 VREGADAVMLS 415 (506)
Q Consensus 405 v~dG~D~vmLs 415 (506)
+..|++.+.++
T Consensus 515 ~~~G~~~lsv~ 525 (565)
T TIGR01417 515 LGLGLRELSMS 525 (565)
T ss_pred HHCCCCEEEEC
Confidence 99999998775
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.04 E-value=4.9e-10 Score=124.02 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=109.8
Q ss_pred CCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHh-----------cCCCceEEEecCChhhhhhHHHHHHhC
Q 010610 272 PSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-----------CGADIHVIVKIESADSIPNLHSIITAS 340 (506)
Q Consensus 272 p~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~-----------~~~~i~IIaKIEt~~aveNldeIl~~s 340 (506)
|.+-....+.|..+.+.|...|++|||.+++++.++++.++. .+.++.+.++||++.|+.|+|+|++.+
T Consensus 367 ~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~v 446 (575)
T PRK11177 367 KEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKEV 446 (575)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhhC
Confidence 444444566677888999999999999999999999987753 245789999999999999999999999
Q ss_pred CEEEEcCCCcccCC-----C-----------CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH
Q 010610 341 DGAMVARGDLGAEL-----P-----------IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA 404 (506)
Q Consensus 341 DGImIaRGDLgvel-----g-----------~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana 404 (506)
|+++||+.||+..+ + .+.|..+.++++++|+++||||.++.+|-. .|.. +.-.
T Consensus 447 Df~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A~------dp~~-----~~lL 515 (575)
T PRK11177 447 DFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAG------DERA-----TLLL 515 (575)
T ss_pred CEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC------CHHH-----HHHH
Confidence 99999999999833 2 136888999999999999999999987652 3332 5578
Q ss_pred HHhCcceeEee
Q 010610 405 VREGADAVMLS 415 (506)
Q Consensus 405 v~dG~D~vmLs 415 (506)
+..|.|-+-.+
T Consensus 516 lglGi~~lSm~ 526 (575)
T PRK11177 516 LGMGLDEFSMS 526 (575)
T ss_pred HHCCCCeEEEC
Confidence 88999987765
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.56 E-value=1.1e-07 Score=96.92 Aligned_cols=160 Identities=25% Similarity=0.187 Sum_probs=118.9
Q ss_pred CccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCce---EEEecCChhhhhhHHHHHHhC---CEEEEcCC
Q 010610 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIH---VIVKIESADSIPNLHSIITAS---DGAMVARG 348 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~---IIaKIEt~~aveNldeIl~~s---DGImIaRG 348 (506)
|++..+||.-.+..++|+|.+|+|+++.|+.++...+.+...... +++.|||+.|+.|..+|...+ .|+.+|-.
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 457788999889999999999999999999999999986655444 999999999999999999986 79999999
Q ss_pred CcccCCCCC-------cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecc----
Q 010610 349 DLGAELPIE-------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE---- 417 (506)
Q Consensus 349 DLgvelg~e-------~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~E---- 417 (506)
||..+++.. .+..+..+|+.+|+.+|++.+..- -+=++++.-- ..+..++...|+|+-++-.=
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~V---~~d~~d~~g~---~~e~~~a~~~Gf~GK~~IHP~QI~ 219 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDGV---YTDINDPEGF---AREAAQAAALGFDGKTCIHPSQIE 219 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCccccc---ccccCCHHHH---HHHHHHHHHcCCCcccccChhHHH
Confidence 999998853 567789999999999999987431 0001111111 44577888999988775200
Q ss_pred --ccCCCCHHHHHHHHHHHHHHHhc
Q 010610 418 --TAHGKFPLKAVKVMHTVSLRTEA 440 (506)
Q Consensus 418 --TA~G~yPveaV~~m~~I~~~aE~ 440 (506)
-..-..+-+-|.+-++|+..++.
T Consensus 220 ~vn~af~Ps~~ev~~Ar~Il~a~~~ 244 (283)
T COG2301 220 VVNRAFSPSEEEVAWARRVLEAAAA 244 (283)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 00112233455666666666654
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.36 E-value=6.6e-06 Score=89.92 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=93.4
Q ss_pred HHhHhhHhc--CCcEEEEccCCCHHHHHHHHHHHHhcC-------CCceEEEecCChhhhhhHHHHHHh----CCEEEEc
Q 010610 280 DDIKFGVDN--KVDFYAVSFVKDAQVVHELKNYLKSCG-------ADIHVIVKIESADSIPNLHSIITA----SDGAMVA 346 (506)
Q Consensus 280 ~dI~~al~~--gvD~IalSfV~saedV~~lr~~l~~~~-------~~i~IIaKIEt~~aveNldeIl~~----sDGImIa 346 (506)
.|++..++. |+ ||.+|++++++|++.+.+.+.... ..+++++.|||+.|+-|++||+.. +.|+..|
T Consensus 174 hd~~~l~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G 252 (511)
T cd00727 174 HNAKALLARGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCG 252 (511)
T ss_pred hhHHHHHhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcC
Confidence 334434444 47 999999999999999998885422 458899999999999999999976 3599999
Q ss_pred CCCcccCCC----C-------C--------cHHHH-HHHHHHHHHHcCCcEEEEehhhhhhhcCCCCCh-hh--------
Q 010610 347 RGDLGAELP----I-------E--------EVPLL-QEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR-AE-------- 397 (506)
Q Consensus 347 RGDLgvelg----~-------e--------~V~~~-Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtR-AE-------- 397 (506)
|.|+..+++ . + .+..+ ++.++.+|+++|+..|-. |-- -.|.+ .+
T Consensus 253 ~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG------m~a-~ip~kdd~~~n~~~l~ 325 (511)
T cd00727 253 RWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG------MAA-QIPIKDDPAANEAALA 325 (511)
T ss_pred hHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc------hhh-cCCcccchhhHHHHHH
Confidence 999999882 1 1 23344 677999999999998752 211 12222 11
Q ss_pred --cccHHHHHHhCcceeEee
Q 010610 398 --VSDIAIAVREGADAVMLS 415 (506)
Q Consensus 398 --v~Dvanav~dG~D~vmLs 415 (506)
..|-.....+|+||-++-
T Consensus 326 ~~r~dk~~~~~lGfDGkwvi 345 (511)
T cd00727 326 KVRADKLREATAGHDGTWVA 345 (511)
T ss_pred HHHHHHHHHHhCCCCccccc
Confidence 345566888899987763
No 33
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.33 E-value=3.8e-06 Score=86.24 Aligned_cols=133 Identities=20% Similarity=0.217 Sum_probs=100.1
Q ss_pred CCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhc-----------CCCceEEEecCChhhhhhHHHHHHhC
Q 010610 272 PSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-----------GADIHVIVKIESADSIPNLHSIITAS 340 (506)
Q Consensus 272 p~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~-----------~~~i~IIaKIEt~~aveNldeIl~~s 340 (506)
|.+-....+.|..+...|==.|++|||++.+++.++++++.+. +.++++-++||+|.++--+|++++.+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~ 198 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEV 198 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHC
Confidence 4444455667777777776679999999999999999988654 34689999999999999999999999
Q ss_pred CEEEEcCCCcc-----cCCC-----------CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH
Q 010610 341 DGAMVARGDLG-----AELP-----------IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA 404 (506)
Q Consensus 341 DGImIaRGDLg-----velg-----------~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana 404 (506)
|.+-||-.||. ++=. .+-|....++++++|+++||||.++.+|-. .|. -+...
T Consensus 199 DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~------~p~-----~~~~L 267 (293)
T PF02896_consen 199 DFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS------DPE-----AIPLL 267 (293)
T ss_dssp SEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG------SHH-----HHHHH
T ss_pred CEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC------CHH-----HHHHH
Confidence 99999877762 1111 125888889999999999999999998762 232 25678
Q ss_pred HHhCcceeEee
Q 010610 405 VREGADAVMLS 415 (506)
Q Consensus 405 v~dG~D~vmLs 415 (506)
+..|.|.+-.+
T Consensus 268 l~lGi~~lSv~ 278 (293)
T PF02896_consen 268 LGLGIRSLSVS 278 (293)
T ss_dssp HHHT-SEEEE-
T ss_pred HHcCCCEEEEC
Confidence 89999999887
No 34
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.26 E-value=1.2e-05 Score=87.91 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=96.2
Q ss_pred cCCCccCCCCCCccCHHHhHhhHhcC-CcEEEEccCCCHHHHHHHHHHHHhcC-------CCceEEEecCChhhhhhHHH
Q 010610 264 VRGKSATLPSITEKDWDDIKFGVDNK-VDFYAVSFVKDAQVVHELKNYLKSCG-------ADIHVIVKIESADSIPNLHS 335 (506)
Q Consensus 264 lp~~~~~lp~ltekD~~dI~~al~~g-vD~IalSfV~saedV~~lr~~l~~~~-------~~i~IIaKIEt~~aveNlde 335 (506)
+|+.-++.-...-+|. +..++.| --+|.+|+|++++|++.+.+.+.... ..+++++.|||+.|+-|++|
T Consensus 162 ~~~~l~Dfgl~~~hd~---~~l~~~g~Gp~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~E 238 (511)
T TIGR01344 162 IPGSLFDFGLYFFHNA---RALLKKGKGPYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDE 238 (511)
T ss_pred CchHHHHHHHHHHhhH---HHHHhCCCCCEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHH
Confidence 3444444433333333 3334442 24999999999999999988875322 35889999999999999999
Q ss_pred HHHh----CCEEEEcCCCcccCCC----C----------------CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCC
Q 010610 336 IITA----SDGAMVARGDLGAELP----I----------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP 391 (506)
Q Consensus 336 Il~~----sDGImIaRGDLgvelg----~----------------e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~ 391 (506)
|+.+ +.|+..||.|+..++. . +-+...++.++.+|+++|+.+|-. |- - -
T Consensus 239 Ia~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdG--m~----a-~ 311 (511)
T TIGR01344 239 ILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGG--MA----A-F 311 (511)
T ss_pred HHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCc--hh----c-c
Confidence 9976 4599999999995443 1 123334788889999999998752 11 0 1
Q ss_pred CCCh--h------h---cccHHHHHHhCcceeEe
Q 010610 392 TPTR--A------E---VSDIAIAVREGADAVML 414 (506)
Q Consensus 392 ~PtR--A------E---v~Dvanav~dG~D~vmL 414 (506)
.|-+ . - ..|-.....+|+|+-++
T Consensus 312 ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwv 345 (511)
T TIGR01344 312 IPIKGDPAANEAAMNKVRADKIREAKNGHDGTWV 345 (511)
T ss_pred CCcccChhhHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 1222 0 1 34455678889998776
No 35
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.21 E-value=2.4e-05 Score=85.88 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=90.1
Q ss_pred CcEEEEccCCCHHHHHHHHHHHHhcC-------CCceEEEecCChhhhhhHHHHHHh----CCEEEEcCCCcccCCCCC-
Q 010610 290 VDFYAVSFVKDAQVVHELKNYLKSCG-------ADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELPIE- 357 (506)
Q Consensus 290 vD~IalSfV~saedV~~lr~~l~~~~-------~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRGDLgvelg~e- 357 (506)
--||.+|++++++++..+.+.+.... ..+++++.|||+.|+.|++||+.. +.|+..|+.||..+++..
T Consensus 185 gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~ 264 (511)
T cd00480 185 GPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTF 264 (511)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhcccc
Confidence 34999999999999999998885432 358899999999999999999987 349999999999988531
Q ss_pred ------------------c-HHHHHHHHHHHHHHcCCcEEE--Eehhh-hhhhcCCCCChhh-cccHHHHHHhCcceeEe
Q 010610 358 ------------------E-VPLLQEEIIRTCRSMGKAVIV--ATNML-ESMIVHPTPTRAE-VSDIAIAVREGADAVML 414 (506)
Q Consensus 358 ------------------~-V~~~Qk~II~~c~~~GkPviv--ATqmL-eSMi~~~~PtRAE-v~Dvanav~dG~D~vmL 414 (506)
. +...++.++.+|+++|.+.|- ++++- ..|-..+...-+- ..|...+...|+|+-+.
T Consensus 265 ~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwv 344 (511)
T cd00480 265 RNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWV 344 (511)
T ss_pred ccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCcccc
Confidence 1 555678899999999998752 22211 0000000001111 34566688899998776
Q ss_pred e
Q 010610 415 S 415 (506)
Q Consensus 415 s 415 (506)
-
T Consensus 345 i 345 (511)
T cd00480 345 A 345 (511)
T ss_pred c
Confidence 3
No 36
>PRK09255 malate synthase; Validated
Probab=98.21 E-value=1.5e-05 Score=87.56 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=89.7
Q ss_pred hcCCcEEEEccCCCHHHHHHHHHHHHhc----C---CCceEEEecCChhhhhhHHHHHHhC----CEEEEcCCCcccC--
Q 010610 287 DNKVDFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNLHSIITAS----DGAMVARGDLGAE-- 353 (506)
Q Consensus 287 ~~gvD~IalSfV~saedV~~lr~~l~~~----~---~~i~IIaKIEt~~aveNldeIl~~s----DGImIaRGDLgve-- 353 (506)
-.|+ +|.+|++++++|++.+.+++... | ..+++++.|||+.|+-|++||+.++ .|+..||.|+..+
T Consensus 204 g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~i 282 (531)
T PRK09255 204 GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYI 282 (531)
T ss_pred CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHH
Confidence 4567 99999999999999999888643 2 4588999999999999999999773 5999999999966
Q ss_pred --CCCC---------------cHHHH-HHHHHHHHHHcCCcEEEEehhhhhhhcCCCCCh-----------hhcccHHHH
Q 010610 354 --LPIE---------------EVPLL-QEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR-----------AEVSDIAIA 404 (506)
Q Consensus 354 --lg~e---------------~V~~~-Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtR-----------AEv~Dvana 404 (506)
++.. .+..+ ++.++.+|+++|+..|-. |- .-.|.+ .=..|-...
T Consensus 283 k~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG--m~-----a~ip~k~D~~~n~~a~~g~r~dk~r~ 355 (531)
T PRK09255 283 KTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG--MA-----AFIPIKNDPEANEAALAKVRADKERE 355 (531)
T ss_pred HHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc--hh-----hcCCcccChhhhHHHHHHHHHHHHHH
Confidence 2210 23344 778889999999998752 21 112311 113345568
Q ss_pred HHhCcceeEee
Q 010610 405 VREGADAVMLS 415 (506)
Q Consensus 405 v~dG~D~vmLs 415 (506)
..+|+||-++-
T Consensus 356 ~~lGfDGkwvi 366 (531)
T PRK09255 356 ANDGHDGTWVA 366 (531)
T ss_pred HhCCCCcceec
Confidence 88999998773
No 37
>PLN02626 malate synthase
Probab=97.92 E-value=0.00018 Score=78.97 Aligned_cols=123 Identities=17% Similarity=0.276 Sum_probs=88.3
Q ss_pred cEEEEccCCCHHHHHHHHHHHHhcC-------CCceEEEecCChhhhhhHHHHHHhC----CEEEEcCCCc----ccCCC
Q 010610 291 DFYAVSFVKDAQVVHELKNYLKSCG-------ADIHVIVKIESADSIPNLHSIITAS----DGAMVARGDL----GAELP 355 (506)
Q Consensus 291 D~IalSfV~saedV~~lr~~l~~~~-------~~i~IIaKIEt~~aveNldeIl~~s----DGImIaRGDL----gvelg 355 (506)
-||.+|.++++++++.+.+++.... ..+++.+.|||..|+-|++||+..+ -|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 5999999999999999988875332 4689999999999999999999774 5999999999 33332
Q ss_pred C-------C--c----HHHHHH---HHHHHHHHcCCcEEEEehhhhhh--hcCCCCChhh----cccHHHHHHhCcceeE
Q 010610 356 I-------E--E----VPLLQE---EIIRTCRSMGKAVIVATNMLESM--IVHPTPTRAE----VSDIAIAVREGADAVM 413 (506)
Q Consensus 356 ~-------e--~----V~~~Qk---~II~~c~~~GkPvivATqmLeSM--i~~~~PtRAE----v~Dvanav~dG~D~vm 413 (506)
. + . ++.++. .++.+|+++|...|-. |---+ .+.|.+.... ..|-.....+|+|+-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgG--M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGG--MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccccc--ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 1 1 2 444444 9999999999997642 22211 1122222211 3455668899999988
Q ss_pred ee
Q 010610 414 LS 415 (506)
Q Consensus 414 Ls 415 (506)
.-
T Consensus 371 Vi 372 (551)
T PLN02626 371 AA 372 (551)
T ss_pred ec
Confidence 74
No 38
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.12 E-value=0.00073 Score=77.68 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=100.4
Q ss_pred cCCcEEEEccCCCHHHHHHHHHHHHhc--------C---CCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcc-----
Q 010610 288 NKVDFYAVSFVKDAQVVHELKNYLKSC--------G---ADIHVIVKIESADSIPNLHSIITASDGAMVARGDLG----- 351 (506)
Q Consensus 288 ~gvD~IalSfV~saedV~~lr~~l~~~--------~---~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLg----- 351 (506)
.|-=.|++|||.+.+++.++++++.+. | .++.+=++||+|.|+--+|++++.+|.+=||-.||.
T Consensus 549 ~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la 628 (748)
T PRK11061 549 TGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLA 628 (748)
T ss_pred CCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence 455679999999999999999888631 2 236799999999999999999999999999988874
Q ss_pred cCCC-----------CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccC
Q 010610 352 AELP-----------IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 352 velg-----------~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~ 420 (506)
++=. .+-|....++++.+|+++||||.++.+|-. .|.. +.-.+..|.|.+-.+
T Consensus 629 ~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a~------dp~~-----~~~L~glGi~~lS~~----- 692 (748)
T PRK11061 629 VDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAG------DPMG-----ALLLIGLGYRHLSMN----- 692 (748)
T ss_pred hcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCccc------CHHH-----HHHHHHCCCcEEccC-----
Confidence 2211 125788889999999999999999988652 3443 457888898886554
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 010610 421 GKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 421 G~yPveaV~~m~~I~~~aE 439 (506)
| .++.-++++++...
T Consensus 693 ---~-~~i~~~k~~i~~~~ 707 (748)
T PRK11061 693 ---G-RSVARVKYLLRHID 707 (748)
T ss_pred ---h-HHHHHHHHHHHhCC
Confidence 2 34444555554443
No 39
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.99 E-value=0.0061 Score=64.79 Aligned_cols=121 Identities=26% Similarity=0.267 Sum_probs=76.0
Q ss_pred CHHHhHhhHhcCCcEEEEcc-------CCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEcCCC
Q 010610 278 DWDDIKFGVDNKVDFYAVSF-------VKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGD 349 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSf-------V~saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIaRGD 349 (506)
..+.++.+++.|+|+|.+.. ..+..+...+.+++++. +++||+ .|-|.+....+-+ .-+|+||+|+|-
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~ 218 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGP 218 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 34555677899999999954 23322455566666653 578888 8888887766554 358999999885
Q ss_pred cccCCCC--C--cHHHH--HHHHHHHHHHc-------CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 350 LGAELPI--E--EVPLL--QEEIIRTCRSM-------GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 350 Lgvelg~--e--~V~~~--Qk~II~~c~~~-------GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
=+..... . .+|.+ -.+....++++ +.|+|.+.-+-. -.|++.|+..|+|++|+
T Consensus 219 Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~------------~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 219 GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGT------------SGDIAKAIACGADAVML 284 (368)
T ss_pred CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC------------HHHHHHHHHcCCCeecc
Confidence 2111111 0 12211 11222222222 689998765432 25899999999999997
No 40
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.91 E-value=0.0041 Score=72.56 Aligned_cols=134 Identities=20% Similarity=0.180 Sum_probs=99.9
Q ss_pred CCCCCccCHHHhHhhHhc----CCc---EEEEccCCCHHHHHHHHHHHHhc--------C--CCceEEEecCChhhhhhH
Q 010610 271 LPSITEKDWDDIKFGVDN----KVD---FYAVSFVKDAQVVHELKNYLKSC--------G--ADIHVIVKIESADSIPNL 333 (506)
Q Consensus 271 lp~ltekD~~dI~~al~~----gvD---~IalSfV~saedV~~lr~~l~~~--------~--~~i~IIaKIEt~~aveNl 333 (506)
.|.|-+-..+.|..|... |.. -|++|||.+.+++..+|+.+.+. | .++.|-++||+|.|.-.+
T Consensus 669 ~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~a 748 (856)
T TIGR01828 669 YPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTA 748 (856)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHH
Confidence 354545555566444433 633 79999999999999999887632 2 246899999999999999
Q ss_pred HHHHHhCCEEEEcCCCccc------------CC------------CC-----CcHHHHHHHHHHHHHH--cCCcEEEEeh
Q 010610 334 HSIITASDGAMVARGDLGA------------EL------------PI-----EEVPLLQEEIIRTCRS--MGKAVIVATN 382 (506)
Q Consensus 334 deIl~~sDGImIaRGDLgv------------el------------g~-----e~V~~~Qk~II~~c~~--~GkPvivATq 382 (506)
|+|++.+|.+-||--||.- .+ |+ +-|....++++++|++ .|+||.++.+
T Consensus 749 d~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE 828 (856)
T TIGR01828 749 DKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGE 828 (856)
T ss_pred HHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCC
Confidence 9999999999999666421 11 22 3477888999999999 9999999987
Q ss_pred hhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 383 MLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 383 mLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
|- ..|.- +...+..|.|.+-.|
T Consensus 829 ~a------~dp~~-----i~~l~~~Gi~~~S~s 850 (856)
T TIGR01828 829 HG------GDPSS-----IEFCHKIGLNYVSCS 850 (856)
T ss_pred Cc------CCHHH-----HHHHHHCCCCEEEEC
Confidence 53 23433 557788899988776
No 41
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.72 E-value=0.0065 Score=67.32 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=98.8
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHh-------c----CCCceEEEecCChhhhhhHHHHHHhCCEEEEc
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-------C----GADIHVIVKIESADSIPNLHSIITASDGAMVA 346 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~-------~----~~~i~IIaKIEt~~aveNldeIl~~sDGImIa 346 (506)
..+.|..|-.+|-=.|++|+|-+.+++.++|+.+.+ . +.++.+=.+||.|.|.-.+|.+++.+|-+=||
T Consensus 374 QLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSIG 453 (574)
T COG1080 374 QLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSIG 453 (574)
T ss_pred HHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEeeec
Confidence 344455666788889999999999999999988752 1 23688899999999999999999999999999
Q ss_pred CCCcc-----cCCCC-----------CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcc
Q 010610 347 RGDLG-----AELPI-----------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGAD 410 (506)
Q Consensus 347 RGDLg-----velg~-----------e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D 410 (506)
-.||. ++=+- +-|....++++..++++||||+++..|- ..|.- +--.+..|.|
T Consensus 454 TNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElA------gD~~a-----~plLlGlGld 522 (574)
T COG1080 454 TNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELA------GDPAA-----TPLLLGLGLD 522 (574)
T ss_pred ccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhc------cChhh-----HHHHHhcCcc
Confidence 88863 22222 2588888999999999999999998654 22322 4457778877
Q ss_pred eeEee
Q 010610 411 AVMLS 415 (506)
Q Consensus 411 ~vmLs 415 (506)
-+-.|
T Consensus 523 ElSms 527 (574)
T COG1080 523 ELSMS 527 (574)
T ss_pred hhccC
Confidence 66554
No 42
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.56 E-value=0.036 Score=58.70 Aligned_cols=121 Identities=25% Similarity=0.357 Sum_probs=83.8
Q ss_pred ccCHHHhHhhHhcCCcEEEE--ccCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEcCCC---
Q 010610 276 EKDWDDIKFGVDNKVDFYAV--SFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGD--- 349 (506)
Q Consensus 276 ekD~~dI~~al~~gvD~Ial--SfV~saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIaRGD--- 349 (506)
+.|.+.++..++.|+|+|.+ ++..+...+..+++ +++...++.||+ .|-|.++.++|-+ .-+|+|-||=|-
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~-ik~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGsi 183 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKK-IKKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGSI 183 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHH-HHHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSSTT
T ss_pred HHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHH-HHHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCcc
Confidence 45677777888899999888 67777777776665 444455777777 8999999977543 238999998442
Q ss_pred ------cccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 350 ------LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 350 ------Lgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
+|+-.| -..+.-+..+.|+.+++|+|--..+= ---|++.|+..|+|+|||
T Consensus 184 CtTr~v~GvG~P---Q~tAv~~~a~~a~~~~v~iIADGGi~------------~sGDi~KAla~GAd~VMl 239 (352)
T PF00478_consen 184 CTTREVTGVGVP---QLTAVYECAEAARDYGVPIIADGGIR------------TSGDIVKALAAGADAVML 239 (352)
T ss_dssp BHHHHHHSBSCT---HHHHHHHHHHHHHCTTSEEEEESS-S------------SHHHHHHHHHTT-SEEEE
T ss_pred cccccccccCCc---HHHHHHHHHHHhhhccCceeecCCcC------------cccceeeeeeecccceee
Confidence 222222 44555677888899999998543221 246899999999999998
No 43
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.38 E-value=0.051 Score=56.80 Aligned_cols=123 Identities=27% Similarity=0.385 Sum_probs=78.5
Q ss_pred ccCHHHhHhhHhcCCcEEEEccCC-CHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHh-CCEEEEc--CCCc
Q 010610 276 EKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVA--RGDL 350 (506)
Q Consensus 276 ekD~~dI~~al~~gvD~IalSfV~-saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~-sDGImIa--RGDL 350 (506)
+++.+.++..++.|+|+|.+++-. +.+.+.++.+.+++...++.|++ .+.|.+...++ ++. +|+|.++ +|--
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l---~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL---IDAGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH---HhcCCCEEEECCCCCcC
Confidence 456777888899999999886532 23445555555555555678876 67666655444 344 8999984 3321
Q ss_pred ccC-----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 351 GAE-----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 351 gve-----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
+.. .+.. -..+...+.+.++..++|||-+..+- + -.|++.++..|+|++|+
T Consensus 170 ~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVIA~GGI~---------~---~~di~kAla~GA~~Vmi 225 (325)
T cd00381 170 CTTRIVTGVGVP-QATAVADVAAAARDYGVPVIADGGIR---------T---SGDIVKALAAGADAVML 225 (325)
T ss_pred cccceeCCCCCC-HHHHHHHHHHHHhhcCCcEEecCCCC---------C---HHHHHHHHHcCCCEEEe
Confidence 100 1111 22334566677778899998654322 2 25799999999999998
No 44
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.08 E-value=0.022 Score=62.71 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=79.4
Q ss_pred CCcEEEEccCCCHHHHHHHHHHHHhcCC-----------------------CceEEEecCChhhhhhHHHHHHh----CC
Q 010610 289 KVDFYAVSFVKDAQVVHELKNYLKSCGA-----------------------DIHVIVKIESADSIPNLHSIITA----SD 341 (506)
Q Consensus 289 gvD~IalSfV~saedV~~lr~~l~~~~~-----------------------~i~IIaKIEt~~aveNldeIl~~----sD 341 (506)
.+-.|++||.++++|+.++..+.++.+- .+.||.-+||.+++.|.++|+.. .+
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 4567999999999999999988876641 35799999999999999999986 11
Q ss_pred ----EEEEcCCCcccCCCCC----cHHHHHHHHHHHHHHcCCcEEEE
Q 010610 342 ----GAMVARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 342 ----GImIaRGDLgvelg~e----~V~~~Qk~II~~c~~~GkPvivA 380 (506)
-||+||.|=+.+.|+- .+-.+|.++.+.|+++|.++...
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pf 248 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPI 248 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 7899999999999973 68899999999999999997754
No 45
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.01 E-value=0.043 Score=58.47 Aligned_cols=121 Identities=22% Similarity=0.289 Sum_probs=70.4
Q ss_pred HHHhHhhHhcCCcEEEEc-------cCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEcCCCc
Q 010610 279 WDDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDL 350 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalS-------fV~saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIaRGDL 350 (506)
.+..+.+++.|+|+|++. |+....+-..+.+++++. +++||+ .|-|.+....+-+ .-+|+||+|||--
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~ 220 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGA 220 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCC
Confidence 345567789999999975 222222344455555443 577887 6766665544433 2489999998642
Q ss_pred ccCCCCC--cHH--HHHHHHHHHHH----Hc---CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 351 GAELPIE--EVP--LLQEEIIRTCR----SM---GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 351 gvelg~e--~V~--~~Qk~II~~c~----~~---GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
...-... .+| .+...+..+++ +. .+|||.+..+-. . .|++.++..|+|++|+.
T Consensus 221 ~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t---------g---~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 221 NTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET---------S---GDLVKAIACGADAVVLG 284 (369)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC---------H---HHHHHHHHcCCCEeeeH
Confidence 2111000 122 11122222222 12 389998765432 2 58999999999999984
No 46
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=95.64 E-value=0.042 Score=64.42 Aligned_cols=135 Identities=21% Similarity=0.175 Sum_probs=101.0
Q ss_pred CCCCCCccCHHHhHhhHh----cCCc---EEEEccCCCHHHHHHHHHHHH--------hcCC--CceEEEecCChhhhhh
Q 010610 270 TLPSITEKDWDDIKFGVD----NKVD---FYAVSFVKDAQVVHELKNYLK--------SCGA--DIHVIVKIESADSIPN 332 (506)
Q Consensus 270 ~lp~ltekD~~dI~~al~----~gvD---~IalSfV~saedV~~lr~~l~--------~~~~--~i~IIaKIEt~~aveN 332 (506)
..|.|.+-..+.|..|.. .|.+ -|++|||.+.++++.+++.+. +.|. +..|=.+||+|.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 446666666666654433 3643 499999999999999998663 2232 4689999999999999
Q ss_pred HHHHHHhCCEEEEcCCCccc------------CC------------CCC-----cHHHHHHHHHHHHHH--cCCcEEEEe
Q 010610 333 LHSIITASDGAMVARGDLGA------------EL------------PIE-----EVPLLQEEIIRTCRS--MGKAVIVAT 381 (506)
Q Consensus 333 ldeIl~~sDGImIaRGDLgv------------el------------g~e-----~V~~~Qk~II~~c~~--~GkPvivAT 381 (506)
+|+|++.+|.+=||--||.- -+ |+. -|....++.+++|++ .|+||+++.
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 99999999999999666531 11 222 477778899999998 799999997
Q ss_pred hhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 382 NMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 382 qmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
++- ..|.- +..++..|.|.+-.|
T Consensus 834 E~g------gdp~~-----i~~l~~lGld~vS~s 856 (879)
T PRK09279 834 EHG------GDPAS-----IEFCHKVGLDYVSCS 856 (879)
T ss_pred CCc------cCHHH-----HHHHHHCCCCEEEEC
Confidence 653 34443 667888899998877
No 47
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.39 E-value=0.19 Score=55.48 Aligned_cols=123 Identities=24% Similarity=0.324 Sum_probs=78.8
Q ss_pred ccCHHHhHhhHhcCCcEEEEccC--CCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHh-CCEEEEc--CCC
Q 010610 276 EKDWDDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVA--RGD 349 (506)
Q Consensus 276 ekD~~dI~~al~~gvD~IalSfV--~saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~-sDGImIa--RGD 349 (506)
+.+.+.++..++.|+|+|.+..- .+...+..++. +++.-.+..|++ -+-|++.... .+++ +|+|.+| +|-
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~~~~~v~aG~V~t~~~a~~---~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNYPHVDIIAGNVVTADQAKN---LIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhCCCceEEECCcCCHHHHHH---HHHcCCCEEEECCcCCc
Confidence 34567777888999999997754 34433333333 233334688888 5666655543 3344 8999864 552
Q ss_pred cc-----cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 350 LG-----AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 350 Lg-----velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
-+ ...|.+. ..+...+.+.|++.|.|+|...-+. | -.|++.|+..|+|++|+.
T Consensus 316 ~~~t~~~~~~g~p~-~~ai~~~~~~~~~~~v~vIadGGi~---------~---~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 316 ICITQEVCAVGRPQ-ASAVYHVARYARERGVPCIADGGIK---------N---SGDICKALALGADCVMLG 373 (495)
T ss_pred ccccchhccCCCCh-HHHHHHHHHHHhhcCCeEEecCCCC---------C---HHHHHHHHHcCCCEEEEC
Confidence 21 1223222 2344577788999999988754333 2 257999999999999983
No 48
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.30 E-value=0.077 Score=58.38 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=80.8
Q ss_pred hcCCcEEEEccCCCHHHHHHHHHHHHhcC--------------CCceEEEecCChhhhhhHHHHHHh--C--------CE
Q 010610 287 DNKVDFYAVSFVKDAQVVHELKNYLKSCG--------------ADIHVIVKIESADSIPNLHSIITA--S--------DG 342 (506)
Q Consensus 287 ~~gvD~IalSfV~saedV~~lr~~l~~~~--------------~~i~IIaKIEt~~aveNldeIl~~--s--------DG 342 (506)
...+-.+++||.++++|+.++..++++.+ ..+.||.-+||.+.+.|.++|++. . --
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 34566799999999999999988876654 147899999999999999999975 1 28
Q ss_pred EEEcCCCcccCCCCC----cHHHHHHHHHHHHHHcCCcEEEE
Q 010610 343 AMVARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 343 ImIaRGDLgvelg~e----~V~~~Qk~II~~c~~~GkPvivA 380 (506)
||+|+.|=+.+-|+- .+..+|.++.+.|+++|+++...
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~f 240 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPI 240 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999999973 78999999999999999997754
No 49
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.74 E-value=0.48 Score=51.68 Aligned_cols=126 Identities=22% Similarity=0.265 Sum_probs=80.7
Q ss_pred CccCHHHhHhhHhcCCcEEEEccCC-CHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEc--CCCc
Q 010610 275 TEKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVA--RGDL 350 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~IalSfV~-saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIa--RGDL 350 (506)
.+.+.+.++..++.|+|+|.+-... +...+.+..+.+++.-.++.|++ -+-|+++..++-+ .=+|+|-|| +|--
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~~ 299 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGSI 299 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCcC
Confidence 4556777778889999999886532 11233333333444334677777 6888877766544 238999866 5522
Q ss_pred ccC-----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 351 GAE-----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 351 gve-----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
... .|.+. ..+..++.+.|++.++|+|....+- + -.|++.|+..|+|++|+.
T Consensus 300 ~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vpviadGGi~---------~---~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 300 CTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIPVIADGGIR---------Y---SGDIVKALAAGADAVMLG 356 (450)
T ss_pred CccceecCCCccH-HHHHHHHHHHHhhcCCeEEEeCCCC---------C---HHHHHHHHHcCCCEEEEC
Confidence 111 22222 2455667788888999988654332 2 257999999999999973
No 50
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.58 E-value=0.44 Score=52.84 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=78.4
Q ss_pred CccCHHHhHhhHhcCCcEEEEccC--CCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHHhCCEEEEc--CCC
Q 010610 275 TEKDWDDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVA--RGD 349 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~IalSfV--~saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDGImIa--RGD 349 (506)
.+.+.+-++..++.|+|+|++--- .+...+.. .+.+++...+..||++ |-|++.-.++.+ .=+|+|.++ +|=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~-i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEM-IKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH-HHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 345677888889999999987543 22222222 2333333346778775 999988766654 348999986 442
Q ss_pred cccC-----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 350 LGAE-----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 350 Lgve-----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
-+.. .|.+.+ .....+-+.+++.++|||....+- + -.|++.|+..|+|++|+
T Consensus 323 ~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGGI~---------~---~~di~kAla~GA~~V~v 379 (505)
T PLN02274 323 ICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGGIS---------N---SGHIVKALTLGASTVMM 379 (505)
T ss_pred cccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCCCC---------C---HHHHHHHHHcCCCEEEE
Confidence 1111 122221 223335566777899999775433 2 25799999999999997
No 51
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=94.51 E-value=0.14 Score=57.11 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=101.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHhc-------C----CCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCc-----ccCCC
Q 010610 292 FYAVSFVKDAQVVHELKNYLKSC-------G----ADIHVIVKIESADSIPNLHSIITASDGAMVARGDL-----GAELP 355 (506)
Q Consensus 292 ~IalSfV~saedV~~lr~~l~~~-------~----~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDL-----gvelg 355 (506)
-|.+|+|.+.+++++.++++.+. + ....+=+++|-|..+..+|+++...|-|=||-.|| +++=+
T Consensus 561 ~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvDR~ 640 (756)
T COG3605 561 RILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVDRN 640 (756)
T ss_pred eeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHhcC
Confidence 58999999999999999988543 2 24568899999999999999999999999999996 34444
Q ss_pred CC-----------cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCH
Q 010610 356 IE-----------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (506)
Q Consensus 356 ~e-----------~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yP 424 (506)
-. .+..+-|+|.++|..+|+||-++.+|- ..|-- ..-.+..|++.+-.+ -|++|+
T Consensus 641 N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~-----A~~LigLGfrslSMn-~~~v~~-- 706 (756)
T COG3605 641 NTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLS-----AMALIGLGFRSLSMN-PRSVGP-- 706 (756)
T ss_pred CchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHH-----HHHHHhcCcCccccC-cccccc--
Confidence 32 467788999999999999999998765 34543 345678899998776 466665
Q ss_pred HHHHHHHHHHHHHHh
Q 010610 425 LKAVKVMHTVSLRTE 439 (506)
Q Consensus 425 veaV~~m~~I~~~aE 439 (506)
||+|-+=+..++
T Consensus 707 ---VK~ml~~ld~~~ 718 (756)
T COG3605 707 ---VKYLLRHLDLAE 718 (756)
T ss_pred ---HHHHHHhccHHH
Confidence 566655444333
No 52
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.51 E-value=0.63 Score=49.13 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=79.3
Q ss_pred CccCHHHhHhhHh--cCCcEEEE--ccCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEc--C
Q 010610 275 TEKDWDDIKFGVD--NKVDFYAV--SFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVA--R 347 (506)
Q Consensus 275 tekD~~dI~~al~--~gvD~Ial--SfV~saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIa--R 347 (506)
++.|.+-++..++ .|+|+|.+ ++=.|...+..+ +++++.-.++.||+ .+-|+++.++|-+ +-+|++-|| +
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~i-k~ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIGp 182 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFV-AKAREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIGP 182 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 4567777776676 49999875 343444444444 44555455667777 7999999877533 348999876 3
Q ss_pred CCcccC-----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 348 GDLGAE-----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 348 GDLgve-----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
|-.... +|.+ -..+..+..+.|+..|+|+|--.- .. ---|++.|+..|+|++||
T Consensus 183 GSiCtTr~vtGvG~P-QltAV~~~a~~a~~~gvpiIADGG---------i~---~sGDI~KAlaaGAd~VMl 241 (346)
T PRK05096 183 GSVCTTRVKTGVGYP-QLSAVIECADAAHGLGGQIVSDGG---------CT---VPGDVAKAFGGGADFVML 241 (346)
T ss_pred CccccCccccccChh-HHHHHHHHHHHHHHcCCCEEecCC---------cc---cccHHHHHHHcCCCEEEe
Confidence 322111 1111 233345677788889999884322 11 246899999999999998
No 53
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=94.38 E-value=0.19 Score=59.37 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=80.7
Q ss_pred CCcEEEEccCCCHHHHHHHHHHHHhcCC--------CceEEEecCChhhhhhHHHHHHh--C--------------CEEE
Q 010610 289 KVDFYAVSFVKDAQVVHELKNYLKSCGA--------DIHVIVKIESADSIPNLHSIITA--S--------------DGAM 344 (506)
Q Consensus 289 gvD~IalSfV~saedV~~lr~~l~~~~~--------~i~IIaKIEt~~aveNldeIl~~--s--------------DGIm 344 (506)
.+..+++|+.++++||.++-.++++.|- .+.|+.-.||.+.++|.++|++. . --||
T Consensus 486 ~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVM 565 (911)
T PRK00009 486 AIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVM 565 (911)
T ss_pred hhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEE
Confidence 5567899999999999999998887652 56899999999999999999986 1 1699
Q ss_pred EcCCCcccCCCCC----cHHHHHHHHHHHHHHcCCcEEEE
Q 010610 345 VARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 345 IaRGDLgvelg~e----~V~~~Qk~II~~c~~~GkPvivA 380 (506)
+|..|=+.+-|+- .+..+|+++.+.|+++|+++...
T Consensus 566 lGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~F 605 (911)
T PRK00009 566 LGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLF 605 (911)
T ss_pred eecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 9999999998873 79999999999999999998765
No 54
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.13 E-value=0.77 Score=47.65 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=69.3
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPI 356 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~ 356 (506)
..+.++..++.++++|.++|-...+.+++++ .. .+.+++.+=+.+ ......+. +|+|.+--.+-|-..+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk----~~--g~~v~~~v~s~~---~a~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLK----EN--GVKVIPVVASVA---LAKRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH----Hc--CCEEEEEcCCHH---HHHHHHHcCCCEEEEECcccCCCCCC
Confidence 3456778889999999998865544444443 33 477888886643 33333333 89998732233333332
Q ss_pred CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
..-....+++. +..++|+|.+..+- + -.|++.++..|+|++++
T Consensus 147 ~~~~~ll~~v~---~~~~iPviaaGGI~---------~---~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 147 LTTMALVPQVV---DAVSIPVIAAGGIA---------D---GRGMAAAFALGAEAVQM 189 (307)
T ss_pred CcHHHHHHHHH---HHhCCCEEEECCCC---------C---HHHHHHHHHcCCCEeec
Confidence 22223333333 34479999886443 2 34578888899999996
No 55
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.73 E-value=1.2 Score=43.78 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=47.8
Q ss_pred CccCHHH-hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEE----ecCChh-hhhhHHHHHHh-CCEEEEcC
Q 010610 275 TEKDWDD-IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV----KIESAD-SIPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 275 tekD~~d-I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIa----KIEt~~-aveNldeIl~~-sDGImIaR 347 (506)
+.+.++. .+.+.+.|+|||.++|..+.+.++++.+ .. .+++++ ++.|.+ .++|+.+.++. ++|+.+||
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~---~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKYTGDAESFKEVVE---GC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHh---cC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 3334443 4558899999999998765555544443 22 234433 233332 67889999988 89999998
Q ss_pred CCcccC
Q 010610 348 GDLGAE 353 (506)
Q Consensus 348 GDLgve 353 (506)
.=+..+
T Consensus 216 ~i~~~~ 221 (235)
T cd00958 216 NIFQRP 221 (235)
T ss_pred hhhcCC
Confidence 766444
No 56
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.42 E-value=0.71 Score=50.95 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=85.0
Q ss_pred CCCccCHHHhHhhHhcCCcEEEEccCC-CHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEc--CC
Q 010610 273 SITEKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVA--RG 348 (506)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~IalSfV~-saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIa--RG 348 (506)
.+++++.+.++..++.|+|.|++---. ....+.+..+.+++...+..||+ -|-|.++..++.+ .=+|+|-|| +|
T Consensus 223 ~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~g 300 (479)
T PRK07807 223 GINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGPG 300 (479)
T ss_pred ccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccCC
Confidence 345566777777888999998874221 13444454555666566789999 9999999988766 348998855 33
Q ss_pred CcccCCCCCc----HHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 349 DLGAELPIEE----VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 349 DLgvelg~e~----V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
-...--+... -..+..++.+.|+..|+|||-... ..+. .|++.++..|+|++|+
T Consensus 301 sictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~gg---------i~~~---~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 301 AMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGG---------VRHP---RDVALALAAGASNVMI 358 (479)
T ss_pred cccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCC---------CCCH---HHHHHHHHcCCCeeec
Confidence 3322222222 223335566666778999996643 2232 5799999999999996
No 57
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.39 E-value=1.4 Score=46.70 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=78.9
Q ss_pred CccCHHHhHhhHhc--CCcEEEEc--cCCCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHHhCCEEEEcCCC
Q 010610 275 TEKDWDDIKFGVDN--KVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVARGD 349 (506)
Q Consensus 275 tekD~~dI~~al~~--gvD~IalS--fV~saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDGImIaRGD 349 (506)
++.|.+-++..+++ ++|+|.+- +=.+...+..+ +++++.-.+..||+- |-|+++.+++-+ .-+|+|.|+=|-
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~i-k~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiGp 181 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFV-KLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIGP 181 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 45677778777777 49998753 33333333333 334444456788887 999999875543 348999987222
Q ss_pred cccCCCC--CcHH----HHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 350 LGAELPI--EEVP----LLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 350 Lgvelg~--e~V~----~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
=++..+- ..+. .+-.++.++++..++|+|.-.-+= .-.|++.|+..|+|++|+-
T Consensus 182 GSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr------------~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 182 GSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT------------CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC------------chhHHHHHHHcCCCEEEEC
Confidence 1222221 1222 333455566666688888643221 2378999999999999984
No 58
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.31 E-value=1.8 Score=42.18 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=75.0
Q ss_pred CHHHhHhhHhcCCcEEEEc--cCCCH--HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCccc
Q 010610 278 DWDDIKFGVDNKVDFYAVS--FVKDA--QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGA 352 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalS--fV~sa--edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgv 352 (506)
+.+.++.+.+.|+|+|.+- +..++ +.+.++.+.+++. ..+.+++.+-|.+-+ ....+. +|.+.+..+++..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~---~~a~~~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEG---LAAQKLGFDFIGTTLSGYTE 152 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHH---HHHHHcCCCEEEcCCceeec
Confidence 4567888999999977653 33233 6667777777664 566777755443322 222222 6888775444422
Q ss_pred CC--CCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHH
Q 010610 353 EL--PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (506)
Q Consensus 353 el--g~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~ 430 (506)
.- ....-...-+++.. ..++|++.+.. .-|. .|+..+...|+|++++.. ++-+ |.+..+.
T Consensus 153 ~~~~~~~~~~~~i~~i~~---~~~iPvia~GG---------I~t~---~~~~~~l~~GadgV~iGs--ai~~-~~~~~~~ 214 (221)
T PRK01130 153 ETKKPEEPDFALLKELLK---AVGCPVIAEGR---------INTP---EQAKKALELGAHAVVVGG--AITR-PEEITKW 214 (221)
T ss_pred CCCCCCCcCHHHHHHHHH---hCCCCEEEECC---------CCCH---HHHHHHHHCCCCEEEEch--HhcC-CHHHHHH
Confidence 11 11111222222222 33799997642 2222 457778889999999973 3333 4455555
Q ss_pred HHHH
Q 010610 431 MHTV 434 (506)
Q Consensus 431 m~~I 434 (506)
+.+.
T Consensus 215 ~~~~ 218 (221)
T PRK01130 215 FVDA 218 (221)
T ss_pred HHHH
Confidence 5443
No 59
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.30 E-value=1 Score=48.72 Aligned_cols=123 Identities=18% Similarity=0.271 Sum_probs=77.7
Q ss_pred ccCHHHhHhhHhcCCcEEE--EccCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEcCCCccc
Q 010610 276 EKDWDDIKFGVDNKVDFYA--VSFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLGA 352 (506)
Q Consensus 276 ekD~~dI~~al~~gvD~Ia--lSfV~saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIaRGDLgv 352 (506)
+.+.+.++..++.|+|+|+ .+.=. .+.+.++.+.+++.-.+..||+ -|-|.++..++.+. -+|+|.+|=|-=++
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~Gs~ 228 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPGSI 228 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCCcC
Confidence 4456778888899999999 44422 3445555555555444565655 78888888776552 48999987332111
Q ss_pred -------CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 353 -------ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 353 -------elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
..|.+.+ .+...+-+.++..+.|||....+ -+ -.|++.|+..|+|+||+
T Consensus 229 c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIAdGGI---------~~---~~Di~KALalGA~aVmv 284 (404)
T PRK06843 229 CTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIADGGI---------RF---SGDVVKAIAAGADSVMI 284 (404)
T ss_pred CcceeecCCCCChH-HHHHHHHHHHhhcCCeEEEeCCC---------CC---HHHHHHHHHcCCCEEEE
Confidence 1122221 12233445666779998866432 22 24799999999999996
No 60
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=92.73 E-value=0.42 Score=56.86 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=86.1
Q ss_pred cEEEEccCCCHHHHHHHHHHHHhcCC-----CceEEEecCChhhhhhHHHHHHh--C---------------CEEEEcCC
Q 010610 291 DFYAVSFVKDAQVVHELKNYLKSCGA-----DIHVIVKIESADSIPNLHSIITA--S---------------DGAMVARG 348 (506)
Q Consensus 291 D~IalSfV~saedV~~lr~~l~~~~~-----~i~IIaKIEt~~aveNldeIl~~--s---------------DGImIaRG 348 (506)
-.+++|+.++++||.++.-+.++.|. .+.|+.-.||.++++|.++|++. . --||+|..
T Consensus 547 g~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYS 626 (974)
T PTZ00398 547 GAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYS 626 (974)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecc
Confidence 34789999999999999988887542 47899999999999999999986 1 17999999
Q ss_pred CcccCCCCC----cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCCh
Q 010610 349 DLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR 395 (506)
Q Consensus 349 DLgvelg~e----~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtR 395 (506)
|=+.+-|+- .+..+|.++.+.|+++|+.+...=..=.|+-...-|+.
T Consensus 627 DS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~ 677 (974)
T PTZ00398 627 DSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQH 677 (974)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChH
Confidence 999999873 79999999999999999998876544444444455554
No 61
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=92.48 E-value=2.5 Score=42.01 Aligned_cols=140 Identities=11% Similarity=0.114 Sum_probs=87.8
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHH--HhCCEEEEcCCCcccCCCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSII--TASDGAMVARGDLGAELPI 356 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl--~~sDGImIaRGDLgvelg~ 356 (506)
...++...+.|+|+|.+-+--....+.+..+.+++.|..+.|-..-+| .++.+.+++ ...|.|++ ++++-|.
T Consensus 78 ~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~v~pG~ 151 (228)
T PTZ00170 78 EKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MTVEPGF 151 (228)
T ss_pred HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hhcccCC
Confidence 445667788999999886544433377888888888876666555555 688999998 66898876 7777666
Q ss_pred CcH---HHHHHHHHHHHHHcC-CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHH
Q 010610 357 EEV---PLLQEEIIRTCRSMG-KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 432 (506)
Q Consensus 357 e~V---~~~Qk~II~~c~~~G-kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~ 432 (506)
... +..-.++-+..+..+ ..+.++.. -.+. .+..++..|+|.+++..--..-+.|.++++.+.
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~~~~~I~VdGG--------I~~~-----ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRYPHLNIQVDGG--------INLE-----TIDIAADAGANVIVAGSSIFKAKDRKQAIELLR 218 (228)
T ss_pred CCcEecHHHHHHHHHHHHhcccCeEEECCC--------CCHH-----HHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHH
Confidence 422 222233322222222 22222211 1111 366788899999988544333456999998888
Q ss_pred HHHHH
Q 010610 433 TVSLR 437 (506)
Q Consensus 433 ~I~~~ 437 (506)
+.+.+
T Consensus 219 ~~~~~ 223 (228)
T PTZ00170 219 ESVQK 223 (228)
T ss_pred HHHHH
Confidence 76654
No 62
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=92.44 E-value=3.1 Score=39.58 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=78.1
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcH
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEV 359 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V 359 (506)
+.++.+.+.|+|+|.++--.+. +..+..+.+...+..+.+ -+......+.+.++...+|.+.++..+-|..=. ..
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~~-~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~--~~ 145 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEATD-HLHRTIQLIKELGMKAGV--ALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQ--KF 145 (211)
T ss_pred HHHHHHHHcCCCEEEECccchh-hHHHHHHHHHHCCCeEEE--EecCCCCHHHHHHHHhhCCEEEEEEECCCCCCc--cc
Confidence 3467778999999988876663 333444444444443333 343323466677777778988776443332111 11
Q ss_pred H-HHHHHHHHHHH-----HcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHH
Q 010610 360 P-LLQEEIIRTCR-----SMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (506)
Q Consensus 360 ~-~~Qk~II~~c~-----~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m 431 (506)
+ ...+.+-+.++ ....|++++..+ .| .++..++..|+|++.....-..-+.|.++++.+
T Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI--------~~-----env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 146 IPEVLEKIRKLRELIPENNLNLLIEVDGGI--------NL-----ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEECCC--------CH-----HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 1 11122211111 224788776421 11 347788889999999987766677788877754
No 63
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.42 E-value=1.2 Score=49.36 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=69.3
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHH--HHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEcCCCcccCCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQ--VVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLGAELP 355 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~sae--dV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIaRGDLgvelg 355 (506)
.+-++..++.|+|+|.+.-..-.. .++.++.+-...+..+.|++ .|.|+++.+.+-+ .=+|+|.||-|-=++-.-
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~c~t 321 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSICIT 321 (502)
T ss_pred HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcCccc
Confidence 455666788999999987211111 13333333233344467777 7899888765543 348999996443211111
Q ss_pred C--CcHHHHH----HHHHHHHH----HcC--CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 356 I--EEVPLLQ----EEIIRTCR----SMG--KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 356 ~--e~V~~~Q----k~II~~c~----~~G--kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
- -.+...| ..+.++++ +.| +|+|.-. ... .-.|++.|+..|+|++|+
T Consensus 322 r~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadg---------Gir---~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 322 REQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDG---------GIV---YDYHMTLALAMGADFIML 380 (502)
T ss_pred ccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcC---------CCC---chhHHHHHHHcCCCeeee
Confidence 1 0122222 23333333 237 7877543 221 247899999999999997
No 64
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.36 E-value=3.2 Score=41.46 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=79.9
Q ss_pred HHhHhhHhcCCcEEEEcc--CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEE---cCCCcccCC
Q 010610 280 DDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV---ARGDLGAEL 354 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSf--V~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImI---aRGDLgvel 354 (506)
+.++.+.+.|+|+|.++. ++..++..++.+.+++.|-+..+...=+|+ ++.+..+++.+|++++ -+|..+
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~g~--- 166 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPATGV--- 166 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCCCC---
Confidence 347778899999999985 566788999999999999888887777774 5778999999998873 334422
Q ss_pred CCCcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 355 PIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 355 g~e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
++..-...-++..++. .+|+.+-. ..=+. .++......|+|+++..
T Consensus 167 ---~~~~~~~~~i~~lr~~~~~~~i~v~g---------GI~~~---e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 167 ---PLPVSVERNIKRVRNLVGNKYLVVGF---------GLDSP---EDARDALSAGADGVVVG 214 (244)
T ss_pred ---CchHHHHHHHHHHHHhcCCCCEEEeC---------CcCCH---HHHHHHHHcCCCEEEEC
Confidence 2333344444555544 35755432 22232 35777788999998764
No 65
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.28 E-value=2.6 Score=41.14 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=68.7
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPI 356 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~ 356 (506)
..+.++.+.+.|+|+|.++.-.+.+.++.+++ ..+.++.++.+. +.+..+.+. +|+|.+....-+-..+.
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~------~~i~~i~~v~~~---~~~~~~~~~gad~i~~~~~~~~G~~~~ 139 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGPPAEVVERLKA------AGIKVIPTVTSV---EEARKAEAAGADALVAQGAEAGGHRGT 139 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH------cCCEEEEeCCCH---HHHHHHHHcCCCEEEEeCcCCCCCCCc
Confidence 45677788899999999998765554444443 246788888765 334444444 78887632221111111
Q ss_pred CcHHHHHHHHHHHHH-HcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 357 EEVPLLQEEIIRTCR-SMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 357 e~V~~~Qk~II~~c~-~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
.. ......++.++ ..++|++.+.- .-+ ..|+..++..|+|+|++.
T Consensus 140 ~~--~~~~~~i~~i~~~~~~Pvi~~GG---------I~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 140 FD--IGTFALVPEVRDAVDIPVIAAGG---------IAD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred cc--cCHHHHHHHHHHHhCCCEEEECC---------CCC---HHHHHHHHHcCCcEEEEc
Confidence 11 11233444444 34789987743 222 246788888999999986
No 66
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=92.11 E-value=0.74 Score=53.39 Aligned_cols=113 Identities=21% Similarity=0.163 Sum_probs=90.0
Q ss_pred cEEEEccCCCHHHHHHHHHHHH---hcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCccc------------CCC
Q 010610 291 DFYAVSFVKDAQVVHELKNYLK---SCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGA------------ELP 355 (506)
Q Consensus 291 D~IalSfV~saedV~~lr~~l~---~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgv------------elg 355 (506)
-.+++||+++..+...+. ... ..+++..+..+||.|.++-..|||++..|++=+|-.||.- +..
T Consensus 596 ~~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~ 674 (740)
T COG0574 596 VEIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDER 674 (740)
T ss_pred cEEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeeccccccccc
Confidence 468899999999988887 443 1112378999999999999999999999999999999752 222
Q ss_pred CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 356 IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 356 ~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
.+.|-...+..+..|+..++.+++++|.-+- |.- +..++..|.|+|.++
T Consensus 675 ~~~v~~li~~a~~~~~~~~~~~~icG~~~~~------p~~-----a~~~~e~Gi~~Vs~n 723 (740)
T COG0574 675 DPAVLKLIIIAIKAADSGGLLVGICGQAPSD------PHG-----AIFLVELGIDSVSLN 723 (740)
T ss_pred cccHHHHHHHHHhcccccCcEEEEeccCCCC------cHH-----HHHHHHcCCCeEecC
Confidence 3468888999999999999999999875432 333 345889999999976
No 67
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=92.05 E-value=1.4 Score=42.86 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=78.3
Q ss_pred HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhh----HHHHHHh-----CCEEEEcCCCcccC
Q 010610 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPN----LHSIITA-----SDGAMVARGDLGAE 353 (506)
Q Consensus 283 ~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveN----ldeIl~~-----sDGImIaRGDLgve 353 (506)
+.+.+.|+|+|.+..--..+.+..+.+++++.|..+.+..+.+++.+++. ++.++.. .||..+
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~-------- 145 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA-------- 145 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE--------
Confidence 55678999999999876566688888888887777777777777766664 3444332 244432
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHH
Q 010610 354 LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 433 (506)
Q Consensus 354 lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~ 433 (506)
+...+..+ +++-+ ..+.++.+.+.-+ +++-.++..++..|+|.+++..---..+-|.++++.|++
T Consensus 146 -~~~~~~~i-~~l~~---~~~~~~~ivdgGI----------~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 146 -PATRPERV-RYIRS---RLGDELKIISPGI----------GAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINE 210 (215)
T ss_pred -CCCcchhH-HHHHH---hcCCCcEEEeCCc----------CCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHH
Confidence 22222211 12211 2223322121111 222223677888999998876433234459999999987
Q ss_pred HHHH
Q 010610 434 VSLR 437 (506)
Q Consensus 434 I~~~ 437 (506)
.+++
T Consensus 211 ~~~~ 214 (215)
T PRK13813 211 EIRG 214 (215)
T ss_pred HHhc
Confidence 6654
No 68
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.92 E-value=8.5 Score=37.97 Aligned_cols=192 Identities=15% Similarity=0.090 Sum_probs=112.2
Q ss_pred CccCHH-HhHhhHhcCCcEEEEccCCCH------HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEc
Q 010610 275 TEKDWD-DIKFGVDNKVDFYAVSFVKDA------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVA 346 (506)
Q Consensus 275 tekD~~-dI~~al~~gvD~IalSfV~sa------edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIa 346 (506)
|..++. .++...+.|+|.|-+.|-... ++..++-+.+.+.+.+..+.+..=+ +.+.++...+. .|.|.+.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVRIF 94 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEEEE
Confidence 444443 455666789999999988877 6666666666666645555554433 24444555544 4666654
Q ss_pred CCCcccC--------CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeecc
Q 010610 347 RGDLGAE--------LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGE 417 (506)
Q Consensus 347 RGDLgve--------lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~E 417 (506)
= +. .+ .+.+.....-...++.++++|..+.+.+... ..+.-+..++.+++. +...|+|.+.|. +
T Consensus 95 ~-~~-s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~----~~~~~~~~~l~~~~~~~~~~g~~~i~l~-D 167 (265)
T cd03174 95 D-SA-SETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA----FGCKTDPEYVLEVAKALEEAGADEISLK-D 167 (265)
T ss_pred E-ec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee----cCCCCCHHHHHHHHHHHHHcCCCEEEec-h
Confidence 1 10 00 1222345556678889999999988875211 111134455555555 566799999985 7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCceEEEEcCCh
Q 010610 418 TAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTG 485 (506)
Q Consensus 418 TA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~Iiv~T~sG 485 (506)
|.=.-+|.+.-+.++.+...... ... .-...++.. +|.+-...|-..|+-+|=.|-.|
T Consensus 168 t~G~~~P~~v~~li~~l~~~~~~-~~~-------~~H~Hn~~g--la~an~laA~~aG~~~id~s~~G 225 (265)
T cd03174 168 TVGLATPEEVAELVKALREALPD-VPL-------GLHTHNTLG--LAVANSLAALEAGADRVDGSVNG 225 (265)
T ss_pred hcCCcCHHHHHHHHHHHHHhCCC-CeE-------EEEeCCCCC--hHHHHHHHHHHcCCCEEEecccc
Confidence 77778898888888777765542 111 111112222 33334455666777555455444
No 69
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.80 E-value=6.9 Score=37.17 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=77.0
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceE-EEecCChhhhhhHHHHHH-hCCEEEEcCCCcccCCCCCc
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHV-IVKIESADSIPNLHSIIT-ASDGAMVARGDLGAELPIEE 358 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~I-IaKIEt~~aveNldeIl~-~sDGImIaRGDLgvelg~e~ 358 (506)
.++.+.+.|+|+|.++.-...+...++.+++++.|..+.+ +..-.|+.-+. +++. -+|.+.+.++--+-..+.+.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~d~v~~~~~~~~~~~~~~~ 145 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGVDIVILHRGIDAQAAGGWW 145 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCCCEEEEcCcccccccCCCC
Confidence 4577889999999998876666777888888776644333 25666655443 2444 48998886542222222122
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHH
Q 010610 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 429 (506)
Q Consensus 359 V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~ 429 (506)
....-+++.+ ....|+.+... -+ ..++..+...|+|++.+.+--..-+-|.++++
T Consensus 146 ~~~~i~~~~~---~~~~~i~~~GG----------I~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 146 PEDDLKKVKK---LLGVKVAVAGG----------IT---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CHHHHHHHHh---hcCCCEEEECC----------cC---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 2222222222 25677766431 12 12477888999999998644333344655554
No 70
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.77 E-value=2.3 Score=44.82 Aligned_cols=127 Identities=18% Similarity=0.287 Sum_probs=75.7
Q ss_pred CccCHHHhHhhHhcCC--cEEEEccC-CCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHHhCCEEEEcCCCc
Q 010610 275 TEKDWDDIKFGVDNKV--DFYAVSFV-KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVARGDL 350 (506)
Q Consensus 275 tekD~~dI~~al~~gv--D~IalSfV-~saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDGImIaRGDL 350 (506)
++++.+-+...++.|+ |+|++--- -.-+.+.++-+.+++.-.+..||++ +-|.+...++.+ .=+|++.+|=|.=
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G 172 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPG 172 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCC
Confidence 4556677777788855 99988211 2233444445555555566889997 999888866654 2389999872211
Q ss_pred cc--C---CCCCcHHHHHHHHHHHH-HHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec
Q 010610 351 GA--E---LPIEEVPLLQEEIIRTC-RSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 351 gv--e---lg~e~V~~~Qk~II~~c-~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ 416 (506)
.. + .+. ..+.+|-..+..| +...+|+|-... .-+. .|++.++..|+|++|+.+
T Consensus 173 ~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIAdGG---------I~~~---~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 173 KVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGG---------IRTH---GDIAKSIRFGATMVMIGS 231 (326)
T ss_pred cccccccccCC-CCCccHHHHHHHHHHHcCCCEEEeCC---------CCCH---HHHHHHHHhCCCEEEech
Confidence 11 1 111 1222232223333 335788775543 2232 479999999999999753
No 71
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.46 E-value=3.8 Score=41.22 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=44.5
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecC--C-hhhhhhHHHHHHh-CCEEEEcCCCcc
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIE--S-ADSIPNLHSIITA-SDGAMVARGDLG 351 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIE--t-~~aveNldeIl~~-sDGImIaRGDLg 351 (506)
.+.+.+.|+|||..||.. ++..++++.+...-.+..+--|= | .++++|++++++. ++|+-++|.=+.
T Consensus 162 ~~~a~~~GADyikt~~~~---~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 162 ARLGAELGADIVKTPYTG---DIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred HHHHHHHCCCEEeccCCC---CHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 366778999999999875 44555555543222333333443 2 4568899999988 899999876553
No 72
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=90.94 E-value=7.2 Score=37.15 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=78.5
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccC---CCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAE---LPI 356 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgve---lg~ 356 (506)
+.++.+.+.|+|+|.+.--.+ ++.....+.++..+....+. ++.....+.+.++...+|++.+..-+-|.. .+.
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 146 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIP 146 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccH
Confidence 346677799999998875443 44555556666666655444 444445777888887789988764332221 111
Q ss_pred CcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHH
Q 010610 357 EEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~ 430 (506)
..+ ..-+++-+..+.. ++|+.++..+ .| ..+..++..|+|++.+......-+-|.++++.
T Consensus 147 ~~~-~~i~~i~~~~~~~~~~~~i~v~GGI--------~~-----env~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 147 DTL-EKIREVRKMIDENGLSILIEVDGGV--------ND-----DNARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred HHH-HHHHHHHHHHHhcCCCceEEEECCc--------CH-----HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 111 2223333333333 3577665421 11 34777889999999987655444457666653
No 73
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=90.63 E-value=7.6 Score=38.52 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=95.2
Q ss_pred CCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCC
Q 010610 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGD 349 (506)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGD 349 (506)
+.--+.+.=...++.-.+.|+|+|.+- ++...++.++-+++++.|.+..+..+=+| -++.++.++...|.|++
T Consensus 62 dvHLMv~~p~~~i~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv---- 134 (220)
T PRK08883 62 DVHLMVKPVDRIIPDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL---- 134 (220)
T ss_pred EEEeccCCHHHHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE----
Confidence 333344333455666678999988775 56667788888889999999999998888 57789999999998888
Q ss_pred cccCCCCC---cHHHHHHHHHH---HHHHcC--CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCC
Q 010610 350 LGAELPIE---EVPLLQEEIIR---TCRSMG--KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 421 (506)
Q Consensus 350 Lgvelg~e---~V~~~Qk~II~---~c~~~G--kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G 421 (506)
++++-|.. -++...++|-+ ...++| .|+.+...+ + ...+...+..|+|++...+---..
T Consensus 135 MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI----------~---~eni~~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGV----------K---VDNIREIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCC----------C---HHHHHHHHHcCCCEEEEeHHHhCC
Confidence 34444432 23323233222 222333 665444311 1 123667788999999886443334
Q ss_pred CCHHHHHHHHHHHHH
Q 010610 422 KFPLKAVKVMHTVSL 436 (506)
Q Consensus 422 ~yPveaV~~m~~I~~ 436 (506)
+-|.++++.+++...
T Consensus 202 ~d~~~~i~~l~~~~~ 216 (220)
T PRK08883 202 PDYKAVIDEMRAELA 216 (220)
T ss_pred CCHHHHHHHHHHHHH
Confidence 568899988887654
No 74
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=90.57 E-value=5 Score=36.59 Aligned_cols=116 Identities=21% Similarity=0.219 Sum_probs=69.7
Q ss_pred hHhhHhcCCcEEEEccCCC------HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCC
Q 010610 282 IKFGVDNKVDFYAVSFVKD------AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAEL 354 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~s------aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvel 354 (506)
.+++.+.|+|+|.+..-.- .+.++++++.+ .+..++.++......+... +.+. +|.+.+..+.-+-..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCC
Confidence 4678889999999987763 33444444433 3678888887655443211 2222 799999876554332
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 355 PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 355 g~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
... .+.....+....+..++|++.+..+- + -.++..++..|+|++++.
T Consensus 152 ~~~-~~~~~~~~~~~~~~~~~pi~~~GGi~---------~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 152 RDA-VPIADLLLILAKRGSKVPVIAGGGIN---------D---PEDAAEALALGADGVIVG 199 (200)
T ss_pred ccC-chhHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHhCCCEEEec
Confidence 211 11111223333456789999875321 1 135777888899999975
No 75
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=90.50 E-value=5.3 Score=42.07 Aligned_cols=126 Identities=17% Similarity=0.272 Sum_probs=75.4
Q ss_pred CCccCHHHhHhhHhcC--CcEEEEcc--CCCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHHhCCEEEEcCC
Q 010610 274 ITEKDWDDIKFGVDNK--VDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVARG 348 (506)
Q Consensus 274 ltekD~~dI~~al~~g--vD~IalSf--V~saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDGImIaRG 348 (506)
.+++|.+-+...++.| +|+|.+-- =.+...++.++. +++.-..+.||++ +-|.+....+.+ .-+|+|.|+=|
T Consensus 91 ~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~G 167 (321)
T TIGR01306 91 VKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGIG 167 (321)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECCC
Confidence 3677888888888888 69887643 333444444444 3333355678888 988887766554 23899998732
Q ss_pred Cccc-----CCCCCcHHHHH-HHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 349 DLGA-----ELPIEEVPLLQ-EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 349 DLgv-----elg~e~V~~~Q-k~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
==+. +.+. .++..| .-|...+.+..+|||.-..+- + -.|++.|+..|+|++|+.
T Consensus 168 ~G~~~~tr~~~g~-g~~~~~l~ai~ev~~a~~~pVIadGGIr---------~---~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 168 PGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR---------T---HGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCccccceeeecc-CCCchHHHHHHHHHHhcCCeEEEECCcC---------c---HHHHHHHHHcCCCEEeec
Confidence 1111 1111 111112 223333444578877543322 2 368999999999999973
No 76
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=90.48 E-value=7.8 Score=37.31 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=78.8
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCC-C-
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELP-I- 356 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg-~- 356 (506)
.+.++.+.+.|+|+|.+..-.+. +.....+.++..+.. ++.-+......+.+.++...+|.+.+..-+-|..-. +
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~~~--~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEASE-HIHRLLQLIKSAGIK--AGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccch-hHHHHHHHHHHcCCE--EEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence 44566677999999998887663 333444445444443 333443233467778888789988776433332221 1
Q ss_pred CcHHHHHHHHHHHHHHcCC-c-EEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHH
Q 010610 357 EEVPLLQEEIIRTCRSMGK-A-VIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 434 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~Gk-P-vivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I 434 (506)
+......+++...+..++. | +.++.. + .| .++......|+|++...+.-..-+-|.++++.+.++
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GG-I-------~~-----~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGG-I-------NA-----DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECC-C-------CH-----HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 1122222333333333333 3 334321 1 22 146666668999999876655446788888877665
No 77
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.35 E-value=11 Score=38.31 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=77.3
Q ss_pred HhhHhcCCcEEEEc------------cCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-----CCEEEE
Q 010610 283 KFGVDNKVDFYAVS------------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMV 345 (506)
Q Consensus 283 ~~al~~gvD~IalS------------fV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDGImI 345 (506)
+.+.+.|+|+|=+. +-.+++.+.++.+.+++. -+++|++|| ++ .++++.+|++. +|+|-+
T Consensus 109 ~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl-~~-~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 109 EKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKL-TP-NVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEe-CC-CchhHHHHHHHHHHcCCCEEEE
Confidence 45567789999773 345666666666666543 268899998 32 23345555442 688765
Q ss_pred c-----CC-Ccc-----------cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhC
Q 010610 346 A-----RG-DLG-----------AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG 408 (506)
Q Consensus 346 a-----RG-DLg-----------velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG 408 (506)
- +. |+. .--|....+...+.+-+..+..++|+|....+- + ..|+..++..|
T Consensus 186 ~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~---------~---~~da~~~l~~G 253 (296)
T cd04740 186 INTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA---------S---GEDALEFLMAG 253 (296)
T ss_pred ECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC---------C---HHHHHHHHHcC
Confidence 2 11 221 001111223333444444455689988765332 2 24788999999
Q ss_pred cceeEeeccccCCCCHHHHHHHHHHHHHHHhccc
Q 010610 409 ADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 409 ~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~ 442 (506)
+|+|++..---. -|- +..+|.+..+.++
T Consensus 254 Ad~V~igra~l~--~p~----~~~~i~~~l~~~~ 281 (296)
T cd04740 254 ASAVQVGTANFV--DPE----AFKEIIEGLEAYL 281 (296)
T ss_pred CCEEEEchhhhc--ChH----HHHHHHHHHHHHH
Confidence 999999744333 342 3344444444433
No 78
>PLN02334 ribulose-phosphate 3-epimerase
Probab=90.11 E-value=11 Score=37.26 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=84.5
Q ss_pred CCCCCCccCHHHhHhhHhcCCcEEEEccCC-CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh--CCEEEEc
Q 010610 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVA 346 (506)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~IalSfV~-saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDGImIa 346 (506)
+.+-+...=-..+..+.+.|+|+|.+..-+ .-+...+.-+.+...|..+.+...=.| -++.+.+++.. +|.|+++
T Consensus 69 ~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~ 146 (229)
T PLN02334 69 DCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVM 146 (229)
T ss_pred EEEeccCCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEE
Confidence 444444311234556688999999776653 223333333444445555555543223 35567788888 9999886
Q ss_pred CCCcccCCCCCcH-HHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCC
Q 010610 347 RGDLGAELPIEEV-PLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 423 (506)
Q Consensus 347 RGDLgvelg~e~V-~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~y 423 (506)
.-.=|..- +.. +.....+ +..++. ++|+.+...+ +. ..+......|+|++...+--..-+.
T Consensus 147 ~v~pg~~~--~~~~~~~~~~i-~~~~~~~~~~~I~a~GGI----------~~---e~i~~l~~aGad~vvvgsai~~~~d 210 (229)
T PLN02334 147 SVEPGFGG--QSFIPSMMDKV-RALRKKYPELDIEVDGGV----------GP---STIDKAAEAGANVIVAGSAVFGAPD 210 (229)
T ss_pred EEecCCCc--cccCHHHHHHH-HHHHHhCCCCcEEEeCCC----------CH---HHHHHHHHcCCCEEEEChHHhCCCC
Confidence 43322111 112 2222222 333332 4676554322 21 2477788899999998765444457
Q ss_pred HHHHHHHHHHHHHHH
Q 010610 424 PLKAVKVMHTVSLRT 438 (506)
Q Consensus 424 PveaV~~m~~I~~~a 438 (506)
|.++++.+.+.+.++
T Consensus 211 ~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 211 YAEVISGLRASVEKA 225 (229)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888776554
No 79
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.00 E-value=21 Score=36.25 Aligned_cols=151 Identities=11% Similarity=0.155 Sum_probs=94.2
Q ss_pred CCccCHHHhHhhH-hcCCcEEEEccCCCHHH----------HHHHHHHHHhcCCCceEEEecCChhh-hhhHHHHHHh-C
Q 010610 274 ITEKDWDDIKFGV-DNKVDFYAVSFVKDAQV----------VHELKNYLKSCGADIHVIVKIESADS-IPNLHSIITA-S 340 (506)
Q Consensus 274 ltekD~~dI~~al-~~gvD~IalSfV~saed----------V~~lr~~l~~~~~~i~IIaKIEt~~a-veNldeIl~~-s 340 (506)
+|..++..|...+ +.|+|+|=+.|....++ .+.++.+......+.++.+..-.... ++.++...+. .
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv 96 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVV 96 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCc
Confidence 3566666775544 58999998888755321 34555554432235667776655432 2223332222 4
Q ss_pred CEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeecccc
Q 010610 341 DGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETA 419 (506)
Q Consensus 341 DGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ETA 419 (506)
|.|.|+ .+...+ ...+++++.++++|..|.+.- ..+ .+-+..++.+.+. +...|+|.+.|. +|.
T Consensus 97 ~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~~--~~a----~~~~~~~~~~~~~~~~~~g~~~i~l~-DT~ 161 (266)
T cd07944 97 DMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFNL--MAI----SGYSDEELLELLELVNEIKPDVFYIV-DSF 161 (266)
T ss_pred CEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEEE--Eee----cCCCHHHHHHHHHHHHhCCCCEEEEe-cCC
Confidence 776664 344444 444677899999998877542 222 2334556666665 455699999995 899
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 010610 420 HGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 420 ~G~yPveaV~~m~~I~~~aE 439 (506)
=.-+|.+.-+.+..+.....
T Consensus 162 G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 162 GSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 89999998888888865443
No 80
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.71 E-value=4.8 Score=44.37 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=75.7
Q ss_pred cCHHHhHhhHhcCCcEEEEc--cCCCHHHHHHHHHHHHhcCCCce-EEEecCChhhhhhHHHHHHhCCEEEEcCCCcccC
Q 010610 277 KDWDDIKFGVDNKVDFYAVS--FVKDAQVVHELKNYLKSCGADIH-VIVKIESADSIPNLHSIITASDGAMVARGDLGAE 353 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalS--fV~saedV~~lr~~l~~~~~~i~-IIaKIEt~~aveNldeIl~~sDGImIaRGDLgve 353 (506)
.+.+.++..++.|+|.|++- +-++ +.+....+.++....+.. ++.-+-|.+...++-+. -+|+|-+|=|--+.+
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~ 304 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSIC 304 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCccc
Confidence 34677778889999988653 2222 344444555555444555 44678888877666542 379998763321211
Q ss_pred C-------CCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 354 L-------PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 354 l-------g~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
. |.+ -..+-.++.+.|++.|+|+|.-.. ..+ -.|++.|+..|+|++|+
T Consensus 305 ~~r~~~~~g~p-~~~~~~~~~~~~~~~~~~viadGG---------i~~---~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 305 TTRIVAGVGVP-QITAIADAAEAAKKYGIPVIADGG---------IRY---SGDIAKALAAGASAVML 359 (486)
T ss_pred cceeecCCCcC-HHHHHHHHHHHhccCCCeEEEcCC---------CCC---HHHHHHHHHhCCCEEEE
Confidence 1 111 223335566677778999886432 223 25799999999999997
No 81
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=89.59 E-value=11 Score=37.53 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=90.0
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCC-
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE- 357 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e- 357 (506)
...++.-.+.|+|+|.+-+ +...++.++-+++++.|....|..+-+| -++.+..++...|.|+| ++++-|+.
T Consensus 75 ~~~i~~~~~~gad~I~~H~-Ea~~~~~~~l~~Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~Vlv----MtV~PGf~G 147 (223)
T PRK08745 75 DRIVPDFADAGATTISFHP-EASRHVHRTIQLIKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLV----MSVNPGFGG 147 (223)
T ss_pred HHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEE----EEECCCCCC
Confidence 3456666788999997764 5556777888889999999999999988 47789999999999888 45555542
Q ss_pred --cHHHHHHHHH---HHHHHcCCcE--EEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHH
Q 010610 358 --EVPLLQEEII---RTCRSMGKAV--IVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (506)
Q Consensus 358 --~V~~~Qk~II---~~c~~~GkPv--ivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~ 430 (506)
-++..-++|- +...+++..+ -+... =+. ..+......|+|.+++.+=--..+-|.++++.
T Consensus 148 Q~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGG----------I~~---eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~ 214 (223)
T PRK08745 148 QAFIPSALDKLRAIRKKIDALGKPIRLEIDGG----------VKA---DNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQ 214 (223)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCeeEEEECC----------CCH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHH
Confidence 2232223322 2333445443 23221 111 12556788899998875322113358999999
Q ss_pred HHHHHHH
Q 010610 431 MHTVSLR 437 (506)
Q Consensus 431 m~~I~~~ 437 (506)
|++.+.+
T Consensus 215 lr~~~~~ 221 (223)
T PRK08745 215 MRAAVAA 221 (223)
T ss_pred HHHHHHh
Confidence 9877544
No 82
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=89.30 E-value=14 Score=40.38 Aligned_cols=301 Identities=15% Similarity=0.149 Sum_probs=151.3
Q ss_pred HHHHHHHHHhCCc-EEEEeCCCCC-h----HHHHHHHHH-HHHHHHhcCCceEEEEeecCCCeeEEeccCCCeEecCCCE
Q 010610 123 REMIWKLAEAGMN-VARLNMSHGD-H----ASHQKVIDL-VKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQE 195 (506)
Q Consensus 123 ~e~i~~li~aGm~-v~RiN~SHg~-~----e~~~~~i~~-ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~~i~Lk~G~~ 195 (506)
..+|+.|++.|.. |.= +||-. + +.. --++. ....++.++ ++|...-|.-||+.+- ..-.|++|+.
T Consensus 45 lpTI~~L~~~gak~vvl--~SHlGRP~g~~~~~-~SL~~va~~L~~lL~-~~V~fv~d~~g~~~~~----~i~~l~~GeV 116 (417)
T PTZ00005 45 LPTIKYLLEQGAKSVVL--MSHLGRPDGRRVEK-YSLKPVVPKLEELLG-KKVTFLNDCVGPEVEE----ACANAKNGSV 116 (417)
T ss_pred HHHHHHHHHCCCCEEEE--EecCCCCCCCcCcc-cCHHHHHHHHHHHHC-CCeEECCCCCCHHHHH----HHHcCCCCCE
Confidence 4589999999986 543 78832 2 111 11222 223344556 8888888999987541 1235888888
Q ss_pred EEEEEecCCCCceEEE--------eccc----hhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCccc
Q 010610 196 FTFTIQRGVGSAECVS--------VNYD----DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (506)
Q Consensus 196 v~lt~~~~~~~~~~i~--------v~~~----~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVn 263 (506)
+.|-.-+....++... -|.+ .|.+.+-.---||++|.-=... |+.-
T Consensus 117 lLLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~DiyVNDAFg~aH---------------------R~ha- 174 (417)
T PTZ00005 117 ILLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFGTAH---------------------RAHS- 174 (417)
T ss_pred EEEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCEEEecchhhhh---------------------hhcc-
Confidence 8776544322222111 1222 3666664444488888421100 0000
Q ss_pred cCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCC-ceEE--EecCChhhhhhHHHHHHhC
Q 010610 264 VRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD-IHVI--VKIESADSIPNLHSIITAS 340 (506)
Q Consensus 264 lp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~-i~II--aKIEt~~aveNldeIl~~s 340 (506)
++-.++.. ....-|.++ .++..+.+.+..-... +.|+ +|+.+.-++ |+.++..+
T Consensus 175 ------S~~gi~~~-~s~aG~lme--------------kEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~v--l~~Ll~k~ 231 (417)
T PTZ00005 175 ------SMVGVDLP-VKVAGFLMK--------------KELDYFSKALENPQRPFLAILGGAKVADKIQL--IKNLLDKV 231 (417)
T ss_pred ------cccccCCc-cchhhHHHH--------------HHHHHHHHHhcCCCCceEEEEcCccHHhHHHH--HHHHHHhc
Confidence 00011100 011112221 3555566655321111 2333 478776554 77778889
Q ss_pred CEEEEcCC--------CcccCCCC----CcHHHHHHHHHHHHHHcCCcEEEEehhhhhh-hcCCCCChhhcccHHHHHHh
Q 010610 341 DGAMVARG--------DLGAELPI----EEVPLLQEEIIRTCRSMGKAVIVATNMLESM-IVHPTPTRAEVSDIAIAVRE 407 (506)
Q Consensus 341 DGImIaRG--------DLgvelg~----e~V~~~Qk~II~~c~~~GkPvivATqmLeSM-i~~~~PtRAEv~Dvanav~d 407 (506)
|.|++|=| .-|.++|- ++....-++|+++|+..|+++++-+...-+= .....+ +.++.+ .+.+-+
T Consensus 232 D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~-~~~~~~-~~~ip~ 309 (417)
T PTZ00005 232 DEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNAN-TKVVTD-KEGIPD 309 (417)
T ss_pred CEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCC-eEEecC-ccCCCC
Confidence 99998732 34455553 3455556799999999999887543332100 000111 111101 111111
Q ss_pred CcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCCC--CCCCCcCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCC
Q 010610 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAM--PPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRT 484 (506)
Q Consensus 408 G~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~--~~~~~~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~s 484 (506)
|...|- +|. ++++...+++..++..+|.-.+ |+. ..+. .-+.+++.+...+. +.++ .||- .
T Consensus 310 --~~~~lD----IGp---~Ti~~~~~~i~~akTV~wNGP~GvFE~--~~F~-~GT~~i~~aia~~t-~~~a~sivG---G 373 (417)
T PTZ00005 310 --GWMGLD----AGP---KSIEEFAEAILRAKTIVWNGPQGVFEM--PNFA-KGSIAMLDAVVKAT-EKGAITIVG---G 373 (417)
T ss_pred --CCEEec----cCH---HHHHHHHHHHhhCCEEEEECCCccccC--Ccch-HHHHHHHHHHHHhc-cCCCEEEEe---C
Confidence 112232 443 7889999999999988886532 221 1111 23445555433322 2344 3332 4
Q ss_pred hHHHHHHHhh
Q 010610 485 GFMAILLSHY 494 (506)
Q Consensus 485 G~tA~~lS~~ 494 (506)
|.|+..+.+|
T Consensus 374 Gdt~aAi~~~ 383 (417)
T PTZ00005 374 GDTASLVEKT 383 (417)
T ss_pred cHHHHHHHHc
Confidence 6777766665
No 83
>PRK15452 putative protease; Provisional
Probab=89.22 E-value=3.1 Score=45.59 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=70.6
Q ss_pred cCHHHhHhhHhcCCcEEEEccC----------CCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHH----h-C
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFV----------KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIIT----A-S 340 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV----------~saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~----~-s 340 (506)
.+.+.++.|+++|||.|.+.+- =+.+|+.++.++..+.|.++.+..- |=..+-++.+.+.++ . .
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 5788999999999999999321 1448899999998888876554321 222334444444443 3 7
Q ss_pred CEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccc
Q 010610 341 DGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 418 (506)
Q Consensus 341 DGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ET 418 (506)
|||+|+ |+|+ +..+++. +.|+...||+-- .| . ..+-.+-..|++.+.||-|-
T Consensus 91 DgvIV~--d~G~--------------l~~~ke~~p~l~ih~stqlni---~N----~---~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 91 DALIMS--DPGL--------------IMMVREHFPEMPIHLSVQANA---VN----W---ATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred CEEEEc--CHHH--------------HHHHHHhCCCCeEEEEecccC---CC----H---HHHHHHHHCCCcEEEECCcC
Confidence 999995 3332 2333333 678998887631 11 0 11223444567777776553
No 84
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.04 E-value=6.3 Score=41.18 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=76.9
Q ss_pred HhhHhcCCcEEEEccCC--C-----HHHH-HHHHHHHHhc--CCCceEEEecCChhhhhhHHHHHHh-----CCEEEEcC
Q 010610 283 KFGVDNKVDFYAVSFVK--D-----AQVV-HELKNYLKSC--GADIHVIVKIESADSIPNLHSIITA-----SDGAMVAR 347 (506)
Q Consensus 283 ~~al~~gvD~IalSfV~--s-----aedV-~~lr~~l~~~--~~~i~IIaKIEt~~aveNldeIl~~-----sDGImIaR 347 (506)
+.+.+.|+|+|-+.+-. . ..+. ..+.++++.. ..+++|++|+ ++ .+.++.++++. +|||.+.-
T Consensus 121 ~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 121 RQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHHHHcCCCeEEEEC
Confidence 44456789999884321 1 1111 1122222221 2358999997 33 33344555443 68876632
Q ss_pred CCcccCCCC--------------CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeE
Q 010610 348 GDLGAELPI--------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVM 413 (506)
Q Consensus 348 GDLgvelg~--------------e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vm 413 (506)
.=.+..+.+ .-.+.+.+.+-...+..+.|+|-...+ -| ..|+..++..|+|+|+
T Consensus 199 ~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI---------~s---~~Da~e~l~aGA~~V~ 266 (334)
T PRK07565 199 RFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGV---------HD---AEDVIKMLLAGADVVM 266 (334)
T ss_pred CcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCC---------CC---HHHHHHHHHcCCCcee
Confidence 212222111 123455555555555567887755432 22 3579999999999999
Q ss_pred eeccccCCCCHHHHHHHHHHHHHHHhcccc
Q 010610 414 LSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (506)
Q Consensus 414 Ls~ETA~G~yPveaV~~m~~I~~~aE~~~~ 443 (506)
+..---.. -| +++.+|+++.+..+.
T Consensus 267 v~t~~~~~-g~----~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 267 IASALLRH-GP----DYIGTILRGLEDWME 291 (334)
T ss_pred eehHHhhh-Cc----HHHHHHHHHHHHHHH
Confidence 97433321 13 566677777776554
No 85
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.90 E-value=9.4 Score=35.42 Aligned_cols=118 Identities=20% Similarity=0.176 Sum_probs=67.7
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCC-CceEEEecCChh-------hhhhHHHHHHh-CCEEEEcCCCcc
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESAD-------SIPNLHSIITA-SDGAMVARGDLG 351 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~-~i~IIaKIEt~~-------aveNldeIl~~-sDGImIaRGDLg 351 (506)
.+++.++.|+|+|.+.- +-++.+++.. +. ++++++++=... .++..++-.+. +|++++..- ..
T Consensus 18 ~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~-~~ 89 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP----GYVRLAADAL---AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN-IG 89 (201)
T ss_pred HHHHHHHhCCcEEEECH----HHHHHHHHHh---CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc-HH
Confidence 34678889999998885 4444444443 44 688999986654 56666666655 899998521 11
Q ss_pred cCCC--CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCC--ChhhcccHHH-HHHhCcceeEee
Q 010610 352 AELP--IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTP--TRAEVSDIAI-AVREGADAVMLS 415 (506)
Q Consensus 352 velg--~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~P--tRAEv~Dvan-av~dG~D~vmLs 415 (506)
.... .+.+...-+.+.+.| ..+.|+++-. .|.- +-.++...+. +...|+|++=.+
T Consensus 90 ~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~--------~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 90 SLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL--------ETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred HHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE--------ECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 1111 233444444555555 4699988753 1211 2223333322 235789988654
No 86
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=88.80 E-value=7 Score=42.22 Aligned_cols=131 Identities=17% Similarity=0.168 Sum_probs=84.9
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceE-EEecCChhhhhhHHHHHHhCCEEEEcC-CCcc-cCCCCCc
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHV-IVKIESADSIPNLHSIITASDGAMVAR-GDLG-AELPIEE 358 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~I-IaKIEt~~aveNldeIl~~sDGImIaR-GDLg-velg~e~ 358 (506)
++.+.+.|+|++.+..--..+.+.+..+.+++.|..+.+ +...+| .++.++++....|.|++.+ -|=+ ..-++
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~t--p~e~i~~l~~~vD~Vllht~vdp~~~~~~~-- 318 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVED--PVKLLESLKVKPDVVELHRGIDEEGTEHAW-- 318 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCC--HHHHHHHhhCCCCEEEEccccCCCcccchH--
Confidence 556779999999999977777888888888887755444 444444 5566777766689888886 2322 11111
Q ss_pred HHHHHHHHHHHHHH--cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHH
Q 010610 359 VPLLQEEIIRTCRS--MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVS 435 (506)
Q Consensus 359 V~~~Qk~II~~c~~--~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~ 435 (506)
+ -++..++ .+.++.++..+ + ..++..++..|+|.+++..--..-+-|.++++.+.+.+
T Consensus 319 -----~-kI~~ikk~~~~~~I~VdGGI----------~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 319 -----G-NIKEIKKAGGKILVAVAGGV----------R---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred -----H-HHHHHHHhCCCCcEEEECCc----------C---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 1 2223333 24566666321 1 22367788899999887644333457999999887765
No 87
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.80 E-value=8.2 Score=39.70 Aligned_cols=125 Identities=20% Similarity=0.304 Sum_probs=74.9
Q ss_pred cCHHHh-HhhHhcCCcEEEE----ccC-----------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-
Q 010610 277 KDWDDI-KFGVDNKVDFYAV----SFV-----------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA- 339 (506)
Q Consensus 277 kD~~dI-~~al~~gvD~Ial----SfV-----------~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~- 339 (506)
.|+.+. +...+.|+|+|-+ |.. ++++.+.++.+.+++. .+++|++||- + .+.++.++++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~-~-~~~~~~~~a~~~ 189 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLT-P-NITDIREIARAA 189 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECC-C-CchhHHHHHHHH
Confidence 344433 3333458888765 222 4566666666666542 3589999995 2 44566666663
Q ss_pred ----CCEEEEc-----CCCc-----------------ccCCCCCcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCC
Q 010610 340 ----SDGAMVA-----RGDL-----------------GAELPIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHP 391 (506)
Q Consensus 340 ----sDGImIa-----RGDL-----------------gvelg~e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~ 391 (506)
+|||.+. |-++ +-=-|....+...+.|-+..+.. ..|+|-...+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~------- 262 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE------- 262 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-------
Confidence 6888742 1111 00011123456667666666666 68887665332
Q ss_pred CCChhhcccHHHHHHhCcceeEeec
Q 010610 392 TPTRAEVSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 392 ~PtRAEv~Dvanav~dG~D~vmLs~ 416 (506)
...|+..++..|+|+||+..
T Consensus 263 -----~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 263 -----SWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred -----CHHHHHHHHHcCCChheEce
Confidence 23589999999999999963
No 88
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.59 E-value=6.9 Score=38.13 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=68.4
Q ss_pred CHHHhHhhHhcCCcEEEE--ccCCCHH--HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCccc-
Q 010610 278 DWDDIKFGVDNKVDFYAV--SFVKDAQ--VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGA- 352 (506)
Q Consensus 278 D~~dI~~al~~gvD~Ial--SfV~sae--dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgv- 352 (506)
+.+.++.+.+.|+|+|.+ +..+.++ .+.++.+.+++.+ ++.+++.+.|++-.....+ .-+|.+.+...++.-
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~ 157 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEE 157 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHH--cCCCEEEccCcccccc
Confidence 456788899999998766 2332233 6666666666666 6788887766543322211 116887664322211
Q ss_pred --CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 353 --ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 353 --elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
......+ ..-+++. ...+.|++....+- + ..|+..++..|+|++++.
T Consensus 158 ~~~~~~~~~-~~l~~i~---~~~~ipvia~GGI~---------~---~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 158 TAKTEDPDF-ELLKELR---KALGIPVIAEGRIN---------S---PEQAAKALELGADAVVVG 206 (219)
T ss_pred ccCCCCCCH-HHHHHHH---HhcCCCEEEeCCCC---------C---HHHHHHHHHCCCCEEEEc
Confidence 1111111 2222222 23379998764321 2 246888899999999985
No 89
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=88.47 E-value=23 Score=33.82 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=78.0
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCCh-hhhhhHHHHHH-hCCEEEEcCCCcccCCCCCc
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESA-DSIPNLHSIIT-ASDGAMVARGDLGAELPIEE 358 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~-~aveNldeIl~-~sDGImIaRGDLgvelg~e~ 358 (506)
.++.+.+.|+|+|.+.+......+.++.+++++.| +++++-+-++ .-++.+....+ -+|.+-+.+|-=+-..+...
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~ 145 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNP 145 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCC
Confidence 57778899999999888776667788888887765 4555443222 12333444445 38988887653222222222
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHH
Q 010610 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 434 (506)
Q Consensus 359 V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I 434 (506)
+. .+-+..+....+.+.++- .. +. ..+..+...|+|++.+.+.--.-+-|.++++.++++
T Consensus 146 ~~----~i~~l~~~~~~~~i~v~G--------GI-~~---~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 146 FE----DLQTILKLVKEARVAVAG--------GI-NL---DTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HH----HHHHHHHhcCCCcEEEEC--------Cc-CH---HHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 21 222222222234443221 11 22 235577889999998854433335688888877654
No 90
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=88.42 E-value=9.5 Score=43.08 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=104.5
Q ss_pred CHHHhHhhHhcCCcEE--EEccCCCHHHHHHHHHHHHhcCCCceEEEecCC--hhhhhhHHHHHHhCCEEEEcCCCcccC
Q 010610 278 DWDDIKFGVDNKVDFY--AVSFVKDAQVVHELKNYLKSCGADIHVIVKIES--ADSIPNLHSIITASDGAMVARGDLGAE 353 (506)
Q Consensus 278 D~~dI~~al~~gvD~I--alSfV~saedV~~lr~~l~~~~~~i~IIaKIEt--~~aveNldeIl~~sDGImIaRGDLgve 353 (506)
..+.|....+.|+|+| +++-.+.|+.+..+++.|...|.+++++|-|== .-|+..+ +.+|.|-|-||.++--
T Consensus 47 tv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~----~~vdkiRINPGNi~~~ 122 (606)
T PRK00694 47 TVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVA----DFVDKVRINPGNYVDK 122 (606)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHH----HhcCceEECCcccCCc
Confidence 3444566678999986 555666677777777778888899999998742 2333322 2379999999999761
Q ss_pred ---------------CCCCcHHHHHHHHHHHHHHcCCcEEEEehh--hhh-hhcCCCCChhh-----cccHHHHHHhCcc
Q 010610 354 ---------------LPIEEVPLLQEEIIRTCRSMGKAVIVATNM--LES-MIVHPTPTRAE-----VSDIAIAVREGAD 410 (506)
Q Consensus 354 ---------------lg~e~V~~~Qk~II~~c~~~GkPvivATqm--LeS-Mi~~~~PtRAE-----v~Dvanav~dG~D 410 (506)
-.++++..--+.++.+|+++|+|+=+-++- |+. +.+.--+|..- +.-+--+-..|++
T Consensus 123 ~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~ 202 (606)
T PRK00694 123 RNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYR 202 (606)
T ss_pred cccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 123356667789999999999998776541 111 11111123211 2223335678999
Q ss_pred eeEeeccccCCCCHHHHHHHHHHHHHHHhcccc
Q 010610 411 AVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (506)
Q Consensus 411 ~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~ 443 (506)
=+.+| ..-..|...|+.-+.++.+.++.-|
T Consensus 203 diviS---~KsSnv~~mi~AyrlLa~~~d~eg~ 232 (606)
T PRK00694 203 DVVFS---MKSSNPKVMVAAYRQLAKDLDARGW 232 (606)
T ss_pred cEEEE---EEcCCHHHHHHHHHHHHHHhhccCC
Confidence 99998 4556677888887778777765433
No 91
>PRK15447 putative protease; Provisional
Probab=88.39 E-value=4.3 Score=41.99 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=75.7
Q ss_pred cCHHHhHhhH-hcCCcEEEEccCC-------CHHHHHHHHHHHHhcCCCceE-EEec-CChhhhhhHHHHHHh-CCEEEE
Q 010610 277 KDWDDIKFGV-DNKVDFYAVSFVK-------DAQVVHELKNYLKSCGADIHV-IVKI-ESADSIPNLHSIITA-SDGAMV 345 (506)
Q Consensus 277 kD~~dI~~al-~~gvD~IalSfV~-------saedV~~lr~~l~~~~~~i~I-IaKI-Et~~aveNldeIl~~-sDGImI 345 (506)
.+.+++-.++ +.|||.|-+.... +.+++.++.+++.++|.++.+ +..| -..+-++.+.++++. .|+|++
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 4677777776 5699999997432 669999999999999988776 3365 456667778888776 477777
Q ss_pred cCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccc
Q 010610 346 ARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 418 (506)
Q Consensus 346 aRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ET 418 (506)
+ |+|. +.. +++.|.|++..|||= +.| .. .+.-+-..|++.+.||-|-
T Consensus 95 ~--d~g~------l~~--------~~e~~~~l~~d~~ln---i~N---~~----a~~~l~~~G~~rv~ls~EL 141 (301)
T PRK15447 95 N--DLGA------VRL--------LAERGLPFVAGPALN---CYN---AA----TLALLARLGATRWCMPVEL 141 (301)
T ss_pred e--CHHH------HHH--------HHhcCCCEEEecccc---cCC---HH----HHHHHHHcCCcEEEECCcC
Confidence 3 3321 222 223499999988752 011 01 1223445578888888664
No 92
>PRK08227 autoinducer 2 aldolase; Validated
Probab=88.39 E-value=8.1 Score=39.60 Aligned_cols=148 Identities=19% Similarity=0.182 Sum_probs=83.0
Q ss_pred HHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCccee
Q 010610 333 LHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV 412 (506)
Q Consensus 333 ldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~v 412 (506)
+..|+.-+|+++.-+|=+....+ ...++|.|+-..-=.++. ...+...-+++|-.|+..|+|+|
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls~~t~~~-~~~~~~~l~~sVeeAvrlGAdAV 111 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRASGGNSIL-KELSNEAVAVDMEDAVRLNACAV 111 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEcCCCCCC-CCCCcccceecHHHHHHCCCCEE
Confidence 44444447888886554322111 223577776533212222 11234555888999999999999
Q ss_pred EeeccccCC-CCHHHHHHHHHHHHHHHhcc-ccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCceEEEEcCChHHHHH
Q 010610 413 MLSGETAHG-KFPLKAVKVMHTVSLRTEAT-ITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAIL 490 (506)
Q Consensus 413 mLs~ETA~G-~yPveaV~~m~~I~~~aE~~-~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~Iiv~T~sG~tA~~ 490 (506)
..+ ...| ++=-+.++.+.+|+++++++ ++---.++ .+... .+..+.++ .|+++|.++||-||=...+|.+-..
T Consensus 112 ~~~--v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~p-rG~~~-~~~~~~ia-~aaRiaaELGADiVK~~y~~~~f~~ 186 (264)
T PRK08227 112 AAQ--VFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTA-VGKDM-VRDARYFS-LATRIAAEMGAQIIKTYYVEEGFER 186 (264)
T ss_pred EEE--EecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEec-CCCCc-CchHHHHH-HHHHHHHHHcCCEEecCCCHHHHHH
Confidence 875 2344 33356777788888888875 11100111 11111 23445555 5679999999966555445744444
Q ss_pred HHhhCCCCeEEE
Q 010610 491 LSHYRPSGTIFA 502 (506)
Q Consensus 491 lS~~RP~~pIia 502 (506)
+-.--| +||+.
T Consensus 187 vv~a~~-vPVvi 197 (264)
T PRK08227 187 ITAGCP-VPIVI 197 (264)
T ss_pred HHHcCC-CcEEE
Confidence 444333 67763
No 93
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=88.30 E-value=3.8 Score=45.24 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=80.7
Q ss_pred CCCccCHHHhHhhHhcCCcEEEE--ccCCCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHHhCCEEEEcCC-
Q 010610 273 SITEKDWDDIKFGVDNKVDFYAV--SFVKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVARG- 348 (506)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~Ial--SfV~saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDGImIaRG- 348 (506)
.+.+.+.+-++..++.|+|.|++ ++-++ +.+.++.+.++....++.||+= +-|.++..++.+. =+|+|=||=|
T Consensus 221 ~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~--G~d~i~vg~g~ 297 (475)
T TIGR01303 221 GINGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA--GANIIKVGVGP 297 (475)
T ss_pred eeCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh--CCCEEEECCcC
Confidence 34555666677778899999875 45333 5555555666665567889996 7787777666542 3798876522
Q ss_pred -CcccCCCCCc----HHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 349 -DLGAELPIEE----VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 349 -DLgvelg~e~----V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
=-...=.+.. -..+--+..+.++..|+|+|--. ...+ -.|++.|+..|+|++|+.
T Consensus 298 Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG---------gi~~---~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 298 GAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG---------GVRH---PRDVALALAAGASNVMVG 357 (475)
T ss_pred CccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC---------CCCC---HHHHHHHHHcCCCEEeec
Confidence 1111101111 22333456666688899987543 2222 368999999999999984
No 94
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=88.29 E-value=0.69 Score=50.98 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=65.5
Q ss_pred cCCcEEEEccCCCHHHHHHHHHHHH----------------hcC-----CCceEEEecCChhhhhhHHHHHHh----C--
Q 010610 288 NKVDFYAVSFVKDAQVVHELKNYLK----------------SCG-----ADIHVIVKIESADSIPNLHSIITA----S-- 340 (506)
Q Consensus 288 ~gvD~IalSfV~saedV~~lr~~l~----------------~~~-----~~i~IIaKIEt~~aveNldeIl~~----s-- 340 (506)
..+-.|++||+.|++++..+.+++. +.+ +.+.||.-||+.+++-|+++|+.. -
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 3567899999999999999876552 111 368899999999999999999986 2
Q ss_pred C----EEEEcCCCcccCCCCC----cHHHHHHHHHHHHHHcCCcEE
Q 010610 341 D----GAMVARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVI 378 (506)
Q Consensus 341 D----GImIaRGDLgvelg~e----~V~~~Qk~II~~c~~~GkPvi 378 (506)
| -||+||.|=++..|+- -+-.+..++-+...+.|.|+.
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 2 7999999999999964 233445566666788999975
No 95
>PLN03034 phosphoglycerate kinase; Provisional
Probab=87.99 E-value=13 Score=41.13 Aligned_cols=303 Identities=17% Similarity=0.167 Sum_probs=159.8
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCChH----HHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCCCeEecCCCEEEE
Q 010610 123 REMIWKLAEAGMNVARLNMSHGDHA----SHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTF 198 (506)
Q Consensus 123 ~e~i~~li~aGm~v~RiN~SHg~~e----~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~~i~Lk~G~~v~l 198 (506)
..+|+.|++.|..|.= +||-..- ....+-.-....++.++ ++|...=|.-||+++- .--.|++|+.+.|
T Consensus 121 lpTI~~L~~~gakvVl--~SHlGRPkg~~~~~SL~pva~~Ls~lL~-~~V~fv~d~~G~~~~~----~i~~l~~GeVlLL 193 (481)
T PLN03034 121 IPTIKYLISNGAKVIL--SSHLGRPKGVTPKFSLAPLVPRLSELLG-IQVVKADDCIGPEVEK----LVASLPEGGVLLL 193 (481)
T ss_pred HHHHHHHHHCCCeEEE--EEecCCCCCCCcccCHHHHHHHHHHHhC-CCeEECCCCCCHHHHH----HHhcCCCCcEEEE
Confidence 3489999999998766 4875421 11111112223345566 8898888888887651 1125788888888
Q ss_pred EEecCCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCccccCCCccCCCCCCccC
Q 010610 199 TIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKD 278 (506)
Q Consensus 199 t~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlp~~~~~lp~ltekD 278 (506)
-.-+....++. |.++|.+.+-..-.||++|.-=... |..=.+ ..+|.+-+
T Consensus 194 ENvRF~~eE~~---nd~~fa~~LA~l~DiyVNDAFgtaH---------------------R~haS~----vGi~~~l~-- 243 (481)
T PLN03034 194 ENVRFYKEEEK---NEPEFAKKLASLADLYVNDAFGTAH---------------------RAHAST----EGVTKFLK-- 243 (481)
T ss_pred eccCcCccccc---CcHHHHHHHHhhCCEEEecchhhhH---------------------hcccch----hhhhhhcC--
Confidence 65544333322 5567888886655589998421100 000000 00110000
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCC-ceEE--EecCChhhhhhHHHHHHhCCEEEEcCC-------
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD-IHVI--VKIESADSIPNLHSIITASDGAMVARG------- 348 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~-i~II--aKIEt~~aveNldeIl~~sDGImIaRG------- 348 (506)
....-|.++ +++..+.+.+..-..- +.|+ +||.+.-++ |+.++..+|.+++|=|
T Consensus 244 ps~aG~Lme--------------kEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~v--i~~Ll~kvD~lliGG~ma~tFl~ 307 (481)
T PLN03034 244 PSVAGFLLQ--------------KELDYLVGAVSNPKRPFAAIVGGSKVSSKIGV--IESLLEKCDILLLGGGMIFTFYK 307 (481)
T ss_pred cchhhHHHH--------------HHHHHHHHHHcCCCCceEEEEcCccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHH
Confidence 001111111 2444555555322111 2233 488776555 7788888999999843
Q ss_pred CcccCCCCC----cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCH
Q 010610 349 DLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (506)
Q Consensus 349 DLgvelg~e----~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yP 424 (506)
-+|.++|.. +....-++|+.++++.|+.+++=....-.=-......+ .+.++ ..+-+ |...|- +|.
T Consensus 308 A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~-~~~~~-~~Ip~--~~~~lD----IGp-- 377 (481)
T PLN03034 308 AQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANS-KIVPA-SAIPD--GWMGLD----IGP-- 377 (481)
T ss_pred HcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCe-EEeeh-hcCCC--CCEEEe----cCH--
Confidence 356666642 45556679999999999987753322210000000011 11121 22332 233443 564
Q ss_pred HHHHHHHHHHHHHHhccccCCCC--CCCCCcCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCC
Q 010610 425 LKAVKVMHTVSLRTEATITGGAM--PPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRP 496 (506)
Q Consensus 425 veaV~~m~~I~~~aE~~~~~~~~--~~~~~~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~~RP 496 (506)
++++...+++.++...+|.-.+ |+. ..+. .-+.+++.+..++. ..++ .|| -.|.|+..+.+|-.
T Consensus 378 -~Ti~~~~~~i~~akTI~WNGPmGvFE~--~~Fa-~GT~~l~~aia~~~-~~~a~sIv---GGGDt~aAi~~~g~ 444 (481)
T PLN03034 378 -DSVKTFNEALDTTQTVIWNGPMGVFEF--EKFA-VGTEAVAKKLAELS-GKGVTTII---GGGDSVAAVEKVGV 444 (481)
T ss_pred -HHHHHHHHHHhhCCEEEEECCcccccC--Ccch-HHHHHHHHHHHHhh-cCCCeEEE---cCcHHHHHHHHcCC
Confidence 8899999999999988886543 331 1111 22345555433322 2344 222 25677777766543
No 96
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=87.93 E-value=24 Score=35.43 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=95.2
Q ss_pred CCCccCHHHhHhhHhcCCcEEEEccCCC-HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcc
Q 010610 273 SITEKDWDDIKFGVDNKVDFYAVSFVKD-AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLG 351 (506)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~IalSfV~s-aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLg 351 (506)
-+.+.=.+.|+.-.+.|+|+|.+-+ +. ..+...+-+++++.|....|..+-.|+ ++.++.++...|.|+| ++
T Consensus 66 LMv~~P~~~i~~~~~aGad~it~H~-Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLv----Ms 138 (229)
T PRK09722 66 LMVTDPQDYIDQLADAGADFITLHP-ETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITV----MT 138 (229)
T ss_pred EEecCHHHHHHHHHHcCCCEEEECc-cCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEE----EE
Confidence 3333334566667788999998764 53 356777778899999999999999985 6889999999999888 44
Q ss_pred cCCCCC---cHHHHHHHHH---HHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCC--CC
Q 010610 352 AELPIE---EVPLLQEEII---RTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KF 423 (506)
Q Consensus 352 velg~e---~V~~~Qk~II---~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G--~y 423 (506)
++-|+. -.+..-++|- +...++|..+.+.. .... +. .-+......|+|.+++.+=--.| +-
T Consensus 139 V~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeV-------DGGI-~~---~~i~~~~~aGad~~V~Gss~iF~~~~d 207 (229)
T PRK09722 139 VDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEV-------DGSC-NQ---KTYEKLMEAGADVFIVGTSGLFNLDED 207 (229)
T ss_pred EcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEE-------ECCC-CH---HHHHHHHHcCCCEEEEChHHHcCCCCC
Confidence 554442 2333333333 22334554443321 1111 11 12446778899998875321234 35
Q ss_pred HHHHHHHHHHHHHHHh
Q 010610 424 PLKAVKVMHTVSLRTE 439 (506)
Q Consensus 424 PveaV~~m~~I~~~aE 439 (506)
|.++++.|++...++.
T Consensus 208 ~~~~i~~l~~~~~~~~ 223 (229)
T PRK09722 208 IDEAWDIMTAQIEAAT 223 (229)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8899999998776654
No 97
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=87.84 E-value=3.6 Score=43.62 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=88.1
Q ss_pred ccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHH----------------HhcCCCceEEEecCChhhhhhHHHHHHh
Q 010610 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYL----------------KSCGADIHVIVKIESADSIPNLHSIITA 339 (506)
Q Consensus 276 ekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l----------------~~~~~~i~IIaKIEt~~aveNldeIl~~ 339 (506)
+.+++.+.-|++.|+|+|.+.- +|+..++++- ...+.....+.+|.+++..+.+.+....
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 6788889999999999998763 5555554321 2233466788899999999999999988
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecccc
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA 419 (506)
+|-++|--.|. --+|+|. +|.+..+.++ ++.. .-+-.|..-.+.....|+|+|+|..+
T Consensus 89 ~~~viv~~~dW-~iIPlEn-------lIA~~~~~~~-l~a~-----------v~~~~eA~~a~~~LE~G~dGVvl~~~-- 146 (344)
T PRK02290 89 VDYVIVEGRDW-TIIPLEN-------LIADLGQSGK-IIAG-----------VADAEEAKLALEILEKGVDGVLLDPD-- 146 (344)
T ss_pred CCEEEEECCCC-cEecHHH-------HHhhhcCCce-EEEE-----------eCCHHHHHHHHHHhccCCCeEEECCC--
Confidence 89888854444 2356655 3444423333 3322 22445666678899999999999755
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 010610 420 HGKFPLKAVKVMHTVSLR 437 (506)
Q Consensus 420 ~G~yPveaV~~m~~I~~~ 437 (506)
-| ..++-+...+.+
T Consensus 147 ---d~-~ei~~~~~~~~~ 160 (344)
T PRK02290 147 ---DP-NEIKAIVALIEE 160 (344)
T ss_pred ---CH-HHHHHHHHHHhc
Confidence 23 444555555544
No 98
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=87.68 E-value=13 Score=36.21 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=70.7
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEE---ec-----------CChhhhhhHHHHHHh-CCE
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV---KI-----------ESADSIPNLHSIITA-SDG 342 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIa---KI-----------Et~~aveNldeIl~~-sDG 342 (506)
+.++++..++.|+|.|++..-- .++...++++.+..+.+..+++ +. ...+.++.+..+.+. +|+
T Consensus 84 ~~e~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 162 (234)
T cd04732 84 SLEDIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred CHHHHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence 5677888889999998876432 2344445555555554222222 11 011222333334333 788
Q ss_pred EEEc-CCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCC
Q 010610 343 AMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 421 (506)
Q Consensus 343 ImIa-RGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G 421 (506)
+++- +.--+..-| .. .+.+-+.++....|++.... .-+. .|+..+...|+|++|+..---.|
T Consensus 163 iii~~~~~~g~~~g-~~----~~~i~~i~~~~~ipvi~~GG---------i~~~---~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 163 IIYTDISRDGTLSG-PN----FELYKELAAATGIPVIASGG---------VSSL---DDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred EEEEeecCCCccCC-CC----HHHHHHHHHhcCCCEEEecC---------CCCH---HHHHHHHHCCCCEEEEeHHHHcC
Confidence 8774 221222222 12 12233334556899998753 3333 34566666799999997666666
Q ss_pred CCHHH
Q 010610 422 KFPLK 426 (506)
Q Consensus 422 ~yPve 426 (506)
+++.+
T Consensus 226 ~~~~~ 230 (234)
T cd04732 226 KITLE 230 (234)
T ss_pred CCCHH
Confidence 66543
No 99
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=87.62 E-value=1.3 Score=51.59 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=89.9
Q ss_pred EeCCCCccccCCCccCCCCCCccCHHHhHhhH----hcCCcE---EEEccCCCHHHHHHHHHHHHhcCCC------ceEE
Q 010610 255 ELKSRRHLNVRGKSATLPSITEKDWDDIKFGV----DNKVDF---YAVSFVKDAQVVHELKNYLKSCGAD------IHVI 321 (506)
Q Consensus 255 ~L~s~KgVnlp~~~~~lp~ltekD~~dI~~al----~~gvD~---IalSfV~saedV~~lr~~l~~~~~~------i~II 321 (506)
+|.+++.+--|+.. ....|.+..+-++-+. +.|.|. .++|+.++++||.++-=++++.|-- +.|+
T Consensus 446 EL~s~RPL~p~~~~--~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~Vv 523 (910)
T COG2352 446 ELSSRRPLLPPFWQ--PSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVV 523 (910)
T ss_pred HhcCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccc
Confidence 45666666555533 3345555555544332 234443 5799999999999999999988744 8899
Q ss_pred EecCChhhhhhHHHHHHh-----------CC-----EEEEcCCCcccCCCCC----cHHHHHHHHHHHHHHcCCcEEE
Q 010610 322 VKIESADSIPNLHSIITA-----------SD-----GAMVARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIV 379 (506)
Q Consensus 322 aKIEt~~aveNldeIl~~-----------sD-----GImIaRGDLgvelg~e----~V~~~Qk~II~~c~~~GkPviv 379 (506)
.--||.+.++|...|+.. .+ -||+|-.|=.-+=|+- .+..+|+.++..|+++|+-.=.
T Consensus 524 PLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl 601 (910)
T COG2352 524 PLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRL 601 (910)
T ss_pred cccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE
Confidence 999999999999999884 11 5888877766665552 6899999999999999987543
No 100
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=87.60 E-value=16 Score=35.43 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=73.3
Q ss_pred HHhHhhHhcCCcEEEEccCC-CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIE 357 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~-saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e 357 (506)
..++.+.+.|+|+|.+.-.. ..++++++.+.....|-+ +++-+-+. +.+.++.+. +|.+.+..-|.... + .
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~--~~v~v~~~---~e~~~~~~~g~~~i~~t~~~~~~~-~-~ 157 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDDEQLKELYELARELGME--VLVEVHDE---EELERALALGAKIIGINNRDLKTF-E-V 157 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCe--EEEEECCH---HHHHHHHHcCCCEEEEeCCCcccc-C-c
Confidence 46888899999999854321 225555555544444433 34444333 334444444 78888886554322 2 1
Q ss_pred cHHHHHHHHHHHHHH--cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHH
Q 010610 358 EVPLLQEEIIRTCRS--MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 429 (506)
Q Consensus 358 ~V~~~Qk~II~~c~~--~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~ 429 (506)
.+ ..+.+.++. .++|++.... .=+. .|+..+...|+|++++..--.....|.++++
T Consensus 158 ~~----~~~~~l~~~~~~~~pvia~gG---------I~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 158 DL----NTTERLAPLIPKDVILVSESG---------ISTP---EDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred CH----HHHHHHHHhCCCCCEEEEEcC---------CCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 22 222223333 4678876542 2222 3577778889999998766556666777765
No 101
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=87.43 E-value=14 Score=37.39 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=61.6
Q ss_pred CCCCccCHHH-hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh----------hhHHHHHHh-
Q 010610 272 PSITEKDWDD-IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI----------PNLHSIITA- 339 (506)
Q Consensus 272 p~ltekD~~d-I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av----------eNldeIl~~- 339 (506)
|.-+..|.+. ++.+++.|+|.|+++- --+...+..+ +.++.++.+|++...+ ...++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 4446667554 4688999999999983 3333333323 3457788988853333 224555554
Q ss_pred CCEEEEc--CCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 340 SDGAMVA--RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 340 sDGImIa--RGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
+|.+.+- -|++ ..+++...-+++.+.|++.|.|+++-
T Consensus 107 ad~v~~~~~~g~~----~~~~~~~~~~~v~~~~~~~g~pl~vi 145 (267)
T PRK07226 107 ADAVSVHVNVGSE----TEAEMLEDLGEVAEECEEWGMPLLAM 145 (267)
T ss_pred CCEEEEEEecCCh----hHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 6755442 1221 13456777788999999999999874
No 102
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.40 E-value=10 Score=38.28 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=71.9
Q ss_pred HHhHhhHhcCCcEEEEccC-----------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-----CCEE
Q 010610 280 DDIKFGVDNKVDFYAVSFV-----------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGA 343 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV-----------~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDGI 343 (506)
+..+.+.+.|+|+|-+.+= ++++.+.++.+.+++. -+..|++|+-.-...+++.++++. +|+|
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i 193 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAERAGADGL 193 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3345666779999987542 2455666655555542 267899998765554455555543 6988
Q ss_pred EEcCCCccc--C------------CCCC---cHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHH
Q 010610 344 MVARGDLGA--E------------LPIE---EVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIA 404 (506)
Q Consensus 344 mIaRGDLgv--e------------lg~e---~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvana 404 (506)
.+.-+-.+. + -++. -.+...+.+-+.++.. ++|+|....+- + ..|+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~---------~---~~da~~~ 261 (289)
T cd02810 194 TAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID---------S---GEDVLEM 261 (289)
T ss_pred EEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC---------C---HHHHHHH
Confidence 875221111 0 0111 1222334444444455 68988765322 2 2468889
Q ss_pred HHhCcceeEee
Q 010610 405 VREGADAVMLS 415 (506)
Q Consensus 405 v~dG~D~vmLs 415 (506)
+..|+|+||+.
T Consensus 262 l~~GAd~V~vg 272 (289)
T cd02810 262 LMAGASAVQVA 272 (289)
T ss_pred HHcCccHheEc
Confidence 99999999986
No 103
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=87.39 E-value=1.4 Score=51.50 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=69.7
Q ss_pred cEEEEccCCCHHHHHHHHHHHHhcCC--------CceEEEecCChhhhhhHHHHHHh--C--------------CEEEEc
Q 010610 291 DFYAVSFVKDAQVVHELKNYLKSCGA--------DIHVIVKIESADSIPNLHSIITA--S--------------DGAMVA 346 (506)
Q Consensus 291 D~IalSfV~saedV~~lr~~l~~~~~--------~i~IIaKIEt~~aveNldeIl~~--s--------------DGImIa 346 (506)
.-.++|+.+++.||.++--+.++.|- .+.|+.-.||.+.++|..+|++. . --||+|
T Consensus 365 ~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlG 444 (794)
T PF00311_consen 365 GRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLG 444 (794)
T ss_dssp EEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEE
T ss_pred HHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEec
Confidence 35689999999999999888887664 37899999999999999999985 1 179999
Q ss_pred CCCcccCCCC----CcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 347 RGDLGAELPI----EEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 347 RGDLgvelg~----e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
-.|=+-+-|+ ..+..+|+.+.+.|+++|+.+.+.
T Consensus 445 YSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 445 YSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp CCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 8887777775 279999999999999999998765
No 104
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=87.26 E-value=3.5 Score=43.87 Aligned_cols=133 Identities=20% Similarity=0.284 Sum_probs=86.8
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHH----------------------HHHHhcCCCceEEEecCChhhhhhHHHH
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELK----------------------NYLKSCGADIHVIVKIESADSIPNLHSI 336 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr----------------------~~l~~~~~~i~IIaKIEt~~aveNldeI 336 (506)
++.+..|++.|+|+|.++- .+++.++++- +.+...+.++.....|.+++-++.+-+.
T Consensus 15 k~~vt~AlEsGvd~vv~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a~~~ 93 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDD-EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEACEL 93 (354)
T ss_pred HHHHHHHHHcCCCEEEECH-hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHHHHH
Confidence 7778899999999998874 2223332221 1112334566688999999999999999
Q ss_pred HHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec
Q 010610 337 ITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 337 l~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ 416 (506)
....|-+++--.|..+ +|+|.+ |.+....+.-++.. .-+-.|..-....+..|+|+|+|..
T Consensus 94 ~~~~~~~iv~~~Dw~i-IPlEnl-------iA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGVll~~ 154 (354)
T PF01959_consen 94 AKRADYVIVEFRDWTI-IPLENL-------IAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGVLLDP 154 (354)
T ss_pred hccCCeEEEEcCCCcE-ecHHHH-------HHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeEEECC
Confidence 8888888876555543 566653 33333344444433 2345566667889999999999975
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 010610 417 ETAHGKFPLKAVKVMHTVSLR 437 (506)
Q Consensus 417 ETA~G~yPveaV~~m~~I~~~ 437 (506)
+ -| ..++-+...+.+
T Consensus 155 ~-----d~-~ei~~~~~~~~~ 169 (354)
T PF01959_consen 155 D-----DP-AEIKALVALLKE 169 (354)
T ss_pred C-----CH-HHHHHHHHHHhh
Confidence 5 23 445555555555
No 105
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=87.26 E-value=11 Score=42.80 Aligned_cols=149 Identities=13% Similarity=0.169 Sum_probs=99.7
Q ss_pred HHHhHhhHhcCCcEEE--EccCCCHHHHHHHHHHHHhcCCCceEEEecCC--hhhhhhHHHHHHhCCEEEEcCCCcccC-
Q 010610 279 WDDIKFGVDNKVDFYA--VSFVKDAQVVHELKNYLKSCGADIHVIVKIES--ADSIPNLHSIITASDGAMVARGDLGAE- 353 (506)
Q Consensus 279 ~~dI~~al~~gvD~Ia--lSfV~saedV~~lr~~l~~~~~~i~IIaKIEt--~~aveNldeIl~~sDGImIaRGDLgve- 353 (506)
.+.|....+.|+|.|- ++-.+.|+.+..+++.+...|.+++++|-|-= .-|+..+ +.+|.|-|-||.++-.
T Consensus 44 v~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~----~~v~kiRINPGN~~~~~ 119 (611)
T PRK02048 44 VAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAA----QYAEKVRINPGNYVDPG 119 (611)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHH----HhhCCEEECCCcCCCcc
Confidence 4445666789999964 55566666667777777778889999997743 3333332 2389999999999773
Q ss_pred --C------------CCCcHHHHHHHHHHHHHHcCCcEEEEeh-------hhhhhhcCCCCChhh-----cccHHHHHHh
Q 010610 354 --L------------PIEEVPLLQEEIIRTCRSMGKAVIVATN-------MLESMIVHPTPTRAE-----VSDIAIAVRE 407 (506)
Q Consensus 354 --l------------g~e~V~~~Qk~II~~c~~~GkPvivATq-------mLeSMi~~~~PtRAE-----v~Dvanav~d 407 (506)
+ .++++..--+.++.+|+++|+|+=+-++ +|+.. -+|..- +.-+--+-..
T Consensus 120 k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y----g~tpe~mVeSAle~~~i~e~~ 195 (611)
T PRK02048 120 RTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY----GDTPEGMVESCMEFLRICVEE 195 (611)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCChHHHHHHHHHHHHHHHHC
Confidence 1 1235566667899999999999877654 23221 122211 1223335678
Q ss_pred CcceeEeeccccCCCCHHHHHHHHHHHH
Q 010610 408 GADAVMLSGETAHGKFPLKAVKVMHTVS 435 (506)
Q Consensus 408 G~D~vmLs~ETA~G~yPveaV~~m~~I~ 435 (506)
|++=+.+|--.+.-...+++.+.+..-+
T Consensus 196 ~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 196 HFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred CCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 9999999987777777766666665544
No 106
>PRK07695 transcriptional regulator TenI; Provisional
Probab=87.20 E-value=12 Score=36.08 Aligned_cols=132 Identities=11% Similarity=0.049 Sum_probs=77.2
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHH
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVP 360 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~ 360 (506)
...+++.++|+|-++.-. ..+..+++.+ .+..|.+.+.+.+- +.+..+. +|.+++++-.-...-+-....
T Consensus 66 ~~la~~~~~~gvHl~~~~--~~~~~~r~~~----~~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~~~ 136 (201)
T PRK07695 66 VDIALLLNIHRVQLGYRS--FSVRSVREKF----PYLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVPAR 136 (201)
T ss_pred HHHHHHcCCCEEEeCccc--CCHHHHHHhC----CCCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCCCC
Confidence 446778899999998632 2245555533 24456665554332 2333233 799998874333221100000
Q ss_pred HHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHH
Q 010610 361 LLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (506)
Q Consensus 361 ~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~ 436 (506)
-.+.+-+.+...++|++....+ +. .++..+...|+|++.+.+.-.....|.++++.+.++..
T Consensus 137 -g~~~l~~~~~~~~ipvia~GGI----------~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 137 -GLEELSDIARALSIPVIAIGGI----------TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred -CHHHHHHHHHhCCCCEEEEcCC----------CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 0122222334457999876532 22 34677788999999988776666789999998887653
No 107
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=87.11 E-value=2.9 Score=44.52 Aligned_cols=153 Identities=18% Similarity=0.283 Sum_probs=88.5
Q ss_pred HHhHhhHhcCCcEE--EEccCCCHHHHHHHHHHHHhcCCCceEEEec--CChhhhhhHHHHHHhCCEEEEcCCCcccCC-
Q 010610 280 DDIKFGVDNKVDFY--AVSFVKDAQVVHELKNYLKSCGADIHVIVKI--ESADSIPNLHSIITASDGAMVARGDLGAEL- 354 (506)
Q Consensus 280 ~dI~~al~~gvD~I--alSfV~saedV~~lr~~l~~~~~~i~IIaKI--Et~~aveNldeIl~~sDGImIaRGDLgvel- 354 (506)
+.|+...+.|+|.| ++|-.+.++.+.++++.|.+.|.+++++|-| .-.-|++.++ .+|.|-|-||.++-++
T Consensus 35 ~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~----~v~kiRINPGNi~~~~~ 110 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIE----AVDKIRINPGNIVDEFQ 110 (359)
T ss_dssp HHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHH----C-SEEEE-TTTSS----
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHH----HhCeEEECCCccccccc
Confidence 34555667999986 5666667777777778888889999999976 4555555433 3799999999996333
Q ss_pred -CCCcHHHHHHHHHHHHHHcCCcEEEEeh--hhhh-hhcCCCCChhh-----cccHHHHHHhCcceeEeeccccCCCCHH
Q 010610 355 -PIEEVPLLQEEIIRTCRSMGKAVIVATN--MLES-MIVHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPL 425 (506)
Q Consensus 355 -g~e~V~~~Qk~II~~c~~~GkPvivATq--mLeS-Mi~~~~PtRAE-----v~Dvanav~dG~D~vmLs~ETA~G~yPv 425 (506)
+...+..--+.++++|+++|+|+=+-.+ -|+. |...-.||..- +..+.-+-..|+|-+.+|- .-..+.
T Consensus 111 ~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSl---KsSdv~ 187 (359)
T PF04551_consen 111 EELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISL---KSSDVP 187 (359)
T ss_dssp SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEE---EBSSHH
T ss_pred ccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEE---EeCChH
Confidence 2235677889999999999999655432 2221 11111222211 2223345567899999984 444455
Q ss_pred HHHHHHHHHHHHHh
Q 010610 426 KAVKVMHTVSLRTE 439 (506)
Q Consensus 426 eaV~~m~~I~~~aE 439 (506)
.+|+.-+.+.++..
T Consensus 188 ~~i~ayr~la~~~d 201 (359)
T PF04551_consen 188 ETIEAYRLLAERMD 201 (359)
T ss_dssp HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcC
Confidence 66665555555444
No 108
>PRK06852 aldolase; Validated
Probab=87.03 E-value=18 Score=37.93 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=71.3
Q ss_pred cCCcEEEEehhhhhhhcC--CCCChhhcccHHHHHHhC------cceeEeeccccCC-CCHHHHHHHHHHHHHHHhcc-c
Q 010610 373 MGKAVIVATNMLESMIVH--PTPTRAEVSDIAIAVREG------ADAVMLSGETAHG-KFPLKAVKVMHTVSLRTEAT-I 442 (506)
Q Consensus 373 ~GkPvivATqmLeSMi~~--~~PtRAEv~Dvanav~dG------~D~vmLs~ETA~G-~yPveaV~~m~~I~~~aE~~-~ 442 (506)
..+|.|+-..-=.++..+ +.|...-+++|-.|+..| +|||..+ ...| .|=-+.++.+.+|+.+++++ +
T Consensus 91 ~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~--v~~Gs~~E~~ml~~l~~v~~ea~~~Gl 168 (304)
T PRK06852 91 PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYT--IYLGSEYESEMLSEAAQIIYEAHKHGL 168 (304)
T ss_pred CCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEE--EecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 357777653321122110 145555588899999999 8888765 2344 34457777888888888875 1
Q ss_pred cC-CCCCCCCCcC-cCCChHHHHHHHHHHHHhhcCceEEE--Ec-----CChHHHHHHHhhCCCCeEE
Q 010610 443 TG-GAMPPNLGQA-FKNHMSEMFAYHATMMSNTLGTSIVV--FT-----RTGFMAILLSHYRPSGTIF 501 (506)
Q Consensus 443 ~~-~~~~~~~~~~-~~~~~~~~ia~~av~~A~~~~a~Iiv--~T-----~sG~tA~~lS~~RP~~pIi 501 (506)
+- ...|+. +.. ......+.++. |+++|.++||-||= +| .+..+-+.+...-.++||+
T Consensus 169 Pll~~~ypr-G~~i~~~~~~~~ia~-aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVv 234 (304)
T PRK06852 169 IAVLWIYPR-GKAVKDEKDPHLIAG-AAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVV 234 (304)
T ss_pred cEEEEeecc-CcccCCCccHHHHHH-HHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEE
Confidence 10 011221 111 12223456665 56999999994443 55 2335666666666457755
No 109
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=86.96 E-value=3.5 Score=44.71 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=82.1
Q ss_pred CccCHHHhHhhHhcCCcEEEEc--cCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHhCCEEEEcCCCcc
Q 010610 275 TEKDWDDIKFGVDNKVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLG 351 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~IalS--fV~saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDGImIaRGDLg 351 (506)
.+.|+..+....+.|+|+|++- -=.|--++..+ +|+++.-.+..||+ .+=|.+=.+|| |.+-+||+-||=|-=+
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemi-k~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsGS 325 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMI-KYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSGS 325 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHH-HHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccCc
Confidence 3567888888899999999874 22333344333 67777777888887 45555444443 4445999999855433
Q ss_pred cCCCCC--cHH----HHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 352 AELPIE--EVP----LLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 352 velg~e--~V~----~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
+-+--+ .+- .+--++.+.|++.|.|||--. --.-+-+++.|+..|++.+|+
T Consensus 326 iCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADG------------Giq~~Ghi~KAl~lGAstVMm 382 (503)
T KOG2550|consen 326 ICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADG------------GIQNVGHVVKALGLGASTVMM 382 (503)
T ss_pred eeeeceeeeccCCcccchhhHHHHHHhcCCceeecC------------CcCccchhHhhhhcCchhhee
Confidence 333322 111 122467888999999998432 122366789999999999985
No 110
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=86.36 E-value=41 Score=35.75 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=95.1
Q ss_pred CCccCHHHhH-hhHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEE--cCC
Q 010610 274 ITEKDWDDIK-FGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMV--ARG 348 (506)
Q Consensus 274 ltekD~~dI~-~al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImI--aRG 348 (506)
+|..++..|. ...+.|+|.|=+.| +.+.++.+.++.+.+ .+.+..+.+-+-. -.+.++..++. .|.|.+ +=.
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~S 95 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKAIDCGVDSIHTFIATS 95 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEcCC
Confidence 3555655554 45578999997754 566777766666554 3556666665531 12334444443 565444 322
Q ss_pred Cccc----CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeeccccCCCC
Q 010610 349 DLGA----ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGKF 423 (506)
Q Consensus 349 DLgv----elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ETA~G~y 423 (506)
|+-. -...+++.......++.|+++|..|.+... ...+-+...+.+++. +...|+|.+.|. +|.=.-+
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~~~ 168 (363)
T TIGR02090 96 PIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEEAGADRINIA-DTVGVLT 168 (363)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCccC
Confidence 3211 122334566667889999999998876532 223334444555554 466799999995 7888889
Q ss_pred HHHHHHHHHHHHHHH
Q 010610 424 PLKAVKVMHTVSLRT 438 (506)
Q Consensus 424 PveaV~~m~~I~~~a 438 (506)
|.+.-+.+..+....
T Consensus 169 P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 169 PQKMEELIKKLKENV 183 (363)
T ss_pred HHHHHHHHHHHhccc
Confidence 999888888776443
No 111
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=85.88 E-value=14 Score=39.82 Aligned_cols=123 Identities=18% Similarity=0.268 Sum_probs=74.0
Q ss_pred CHHHhH-hhHhcCCcEEEEcc-----C----------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh--
Q 010610 278 DWDDIK-FGVDNKVDFYAVSF-----V----------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-- 339 (506)
Q Consensus 278 D~~dI~-~al~~gvD~IalSf-----V----------~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-- 339 (506)
++.+.. ..-+.|+|+|-+.+ + ++++.+.++.+.+.+. .+++|++||= + .+.++.+|++.
T Consensus 114 ~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~-p-~~~~~~~~a~~~~ 190 (420)
T PRK08318 114 EWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLT-P-NITDIREPARAAK 190 (420)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcC-C-CcccHHHHHHHHH
Confidence 344443 33456788876532 2 4556666666655543 3589999994 3 45567777664
Q ss_pred ---CCEEEE-----cCCC-----------c------ccCCCCCcHHHHHHHHHHHHHHc---CCcEEEEehhhhhhhcCC
Q 010610 340 ---SDGAMV-----ARGD-----------L------GAELPIEEVPLLQEEIIRTCRSM---GKAVIVATNMLESMIVHP 391 (506)
Q Consensus 340 ---sDGImI-----aRGD-----------L------gvelg~e~V~~~Qk~II~~c~~~---GkPvivATqmLeSMi~~~ 391 (506)
+|||.+ +|-+ | |-=-|....+...+.|-+..++. ..|+|-...+.
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~------- 263 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE------- 263 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC-------
Confidence 688883 2211 1 00012234555666666666655 57877654332
Q ss_pred CCChhhcccHHHHHHhCcceeEee
Q 010610 392 TPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 392 ~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
...|+..+++.|+|+||+.
T Consensus 264 -----s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 264 -----TWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred -----CHHHHHHHHHhCCChheee
Confidence 2358999999999999997
No 112
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=85.73 E-value=21 Score=34.36 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=74.8
Q ss_pred HHhHhhHhcCCcEEEE-----ccCCC----HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCC
Q 010610 280 DDIKFGVDNKVDFYAV-----SFVKD----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD 349 (506)
Q Consensus 280 ~dI~~al~~gvD~Ial-----SfV~s----aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGD 349 (506)
+.++.+.+.|+|+|-+ +|+.+ .+.++++++.+ .....+-.++-. ..+.++.+.+. +||+.+=-
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~-- 92 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT---KLPLDVHLMVEN--PDRYVPDFAKAGADIITFHV-- 92 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC---CCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEee--
Confidence 4567788899999999 98854 55555555433 212223344443 33355666655 79976631
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec--cccCC-CCHHH
Q 010610 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG--ETAHG-KFPLK 426 (506)
Q Consensus 350 Lgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~--ETA~G-~yPve 426 (506)
+.. ......++.+++.|..+++++. |. |..| ....+..++|.+++-+ .|..| .++.+
T Consensus 93 -----~~~---~~~~~~~~~~~~~~~~~g~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 152 (220)
T PRK05581 93 -----EAS---EHIHRLLQLIKSAGIKAGLVLN--------PA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIPE 152 (220)
T ss_pred -----ccc---hhHHHHHHHHHHcCCEEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccHH
Confidence 111 2234568999999999888641 11 2222 3445556688665532 23333 44556
Q ss_pred HHHHHHHHHHH
Q 010610 427 AVKVMHTVSLR 437 (506)
Q Consensus 427 aV~~m~~I~~~ 437 (506)
..+.++++...
T Consensus 153 ~~~~i~~~~~~ 163 (220)
T PRK05581 153 VLEKIRELRKL 163 (220)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 113
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.67 E-value=15 Score=35.06 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=68.6
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVARGDLGAELPIE 357 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e 357 (506)
+-++.+++.|+++|-+.+ ++......++.+.+..+ +..|-+ -|=+. +++++.++. +|+++.+-.|
T Consensus 20 ~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~~---~~~~~a~~~Ga~~i~~p~~~-------- 86 (190)
T cd00452 20 ALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLTP---EQADAAIAAGAQFIVSPGLD-------- 86 (190)
T ss_pred HHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCCH---HHHHHHHHcCCCEEEcCCCC--------
Confidence 334567789999999985 67777777777665543 333332 22223 455666666 7898754222
Q ss_pred cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 358 EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 358 ~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
..++..|+..|.|++.-. -|. +++..+...|+|.+.+.
T Consensus 87 ------~~~~~~~~~~~~~~i~gv-----------~t~---~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 ------PEVVKAANRAGIPLLPGV-----------ATP---TEIMQALELGADIVKLF 124 (190)
T ss_pred ------HHHHHHHHHcCCcEECCc-----------CCH---HHHHHHHHCCCCEEEEc
Confidence 468899999999977421 133 44778889999999984
No 114
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=85.62 E-value=17 Score=38.77 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=93.3
Q ss_pred EEEccCCCHHHHHHHHHHHHh----cCCCceEEEe---cCC--hh------hhhhHHHHHHh-----CCEEEEcCCCccc
Q 010610 293 YAVSFVKDAQVVHELKNYLKS----CGADIHVIVK---IES--AD------SIPNLHSIITA-----SDGAMVARGDLGA 352 (506)
Q Consensus 293 IalSfV~saedV~~lr~~l~~----~~~~i~IIaK---IEt--~~------aveNldeIl~~-----sDGImIaRGDLgv 352 (506)
++.+-=+++.-...+..++.. ...+..|++- +|. .. +++|.+.+++. +|+++.-+|=|..
T Consensus 38 ~~~~~~~~~~~~~rL~Rl~~~g~l~~tGr~vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~~G~l~~ 117 (348)
T PRK09250 38 VMIYSDRNPGVLRNLQRLLNHGRLAGTGYLSILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVASTLGVLEA 117 (348)
T ss_pred ccCcccCCHhHHHHHHHHhcccccCCCCCEEEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeCHHHHHh
Confidence 344444566666666666643 2223444441 222 11 66776666554 6888876443321
Q ss_pred -CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCC-CCHHHHHHH
Q 010610 353 -ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG-KFPLKAVKV 430 (506)
Q Consensus 353 -elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G-~yPveaV~~ 430 (506)
..+ -...+|.|+--.-=.++.....+...-+++|-.|+..|+|+|..+ ...| .+=-+.++.
T Consensus 118 ~~~~---------------~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~t--vy~Gs~~E~~ml~~ 180 (348)
T PRK09250 118 VARK---------------YAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGAT--IYFGSEESRRQIEE 180 (348)
T ss_pred cccc---------------ccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEE--EecCCHHHHHHHHH
Confidence 111 123478777643222221212345555888999999999999875 2344 333567777
Q ss_pred HHHHHHHHhcc-ccC-CCCCCC---CCcCcC-CChHHHHHHHHHHHHhhcCceEEE--EcCC
Q 010610 431 MHTVSLRTEAT-ITG-GAMPPN---LGQAFK-NHMSEMFAYHATMMSNTLGTSIVV--FTRT 484 (506)
Q Consensus 431 m~~I~~~aE~~-~~~-~~~~~~---~~~~~~-~~~~~~ia~~av~~A~~~~a~Iiv--~T~s 484 (506)
+.+|+.+++.+ ++- ...|+. +..... ....+.+|. |+++|.++||-||= +|.+
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~-AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQ-ANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHH-HHHHHHHHcCCEEEecCCCC
Confidence 88888888875 110 001111 111110 112466665 57899999994433 4543
No 115
>PRK08999 hypothetical protein; Provisional
Probab=85.42 E-value=18 Score=37.05 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcC
Q 010610 123 REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 164 (506)
Q Consensus 123 ~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~ 164 (506)
.+.+++++..|++.+-|-.-|.+.++..+.++.+++..++++
T Consensus 147 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~ 188 (312)
T PRK08999 147 LARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAG 188 (312)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 467889999999999999999999988999998988877665
No 116
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=85.39 E-value=36 Score=34.93 Aligned_cols=167 Identities=15% Similarity=0.048 Sum_probs=102.1
Q ss_pred CCccccCCCccCCCCCCccCHHHhHhhH-hc-CCcEEEEc-cCCCHHHHHHHHHHHHhcC-----CCceEEEecCChhhh
Q 010610 259 RRHLNVRGKSATLPSITEKDWDDIKFGV-DN-KVDFYAVS-FVKDAQVVHELKNYLKSCG-----ADIHVIVKIESADSI 330 (506)
Q Consensus 259 ~KgVnlp~~~~~lp~ltekD~~dI~~al-~~-gvD~IalS-fV~saedV~~lr~~l~~~~-----~~i~IIaKIEt~~av 330 (506)
|-|..-|+.. +|.+++..|...+ +. |+|.|=+. |.-+++|.+.++++.+... ....+++-+.+..++
T Consensus 6 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 80 (280)
T cd07945 6 RDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSV 80 (280)
T ss_pred CCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHH
Confidence 4455555553 3455666666664 55 99999775 5589988888877764321 135666666554443
Q ss_pred hhHHHHHHh-CCEEEEc--CCCcccC----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCC-CCChhhcccHH
Q 010610 331 PNLHSIITA-SDGAMVA--RGDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP-TPTRAEVSDIA 402 (506)
Q Consensus 331 eNldeIl~~-sDGImIa--RGDLgve----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~-~PtRAEv~Dva 402 (506)
+..++. .|.|-+. =.|.-.. ...++.....+++++.|+.+|..|.+.-.. ..+| +-+...+.+++
T Consensus 81 ---~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 81 ---DWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQLV 153 (280)
T ss_pred ---HHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHHH
Confidence 333333 5655443 1121111 123466666788899999999987765321 1122 11223355555
Q ss_pred H-HHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHH
Q 010610 403 I-AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 403 n-av~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~a 438 (506)
. +...|+|.+-|. +|.=.-.|.+.-+++..+....
T Consensus 154 ~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 154 DFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKRY 189 (280)
T ss_pred HHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhhC
Confidence 4 555699999995 8888889999988888886543
No 117
>PLN02591 tryptophan synthase
Probab=85.22 E-value=27 Score=35.52 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=77.7
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEE--EcCCCcccCCCCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM--VARGDLGAELPIE 357 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGIm--IaRGDLgvelg~e 357 (506)
+-++.+.+.|+|++.+|=.. .++..++++.+++.|-+. |.-+=--..-+.+..|.+.++|.+ |++ .|+.=.-.
T Consensus 97 ~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl~~--I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~ 171 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGIEL--VLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGARA 171 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCCeE--EEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCCc
Confidence 44677789999999999764 577888888887766543 333311112457899999987665 233 22221122
Q ss_pred cHHHHHHHHHHHHHH-cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 358 EVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 358 ~V~~~Qk~II~~c~~-~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
.++...+..++.+++ .++|+++-. ..=++ .|+......|+|+++..
T Consensus 172 ~~~~~~~~~i~~vk~~~~~Pv~vGF---------GI~~~---e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 172 SVSGRVESLLQELKEVTDKPVAVGF---------GISKP---EHAKQIAGWGADGVIVG 218 (250)
T ss_pred CCchhHHHHHHHHHhcCCCceEEeC---------CCCCH---HHHHHHHhcCCCEEEEC
Confidence 456666777777776 589988764 23233 25777888899999875
No 118
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=85.21 E-value=12 Score=37.48 Aligned_cols=100 Identities=22% Similarity=0.320 Sum_probs=57.9
Q ss_pred CCCCCCccCHHHhHhhHhcCCcEEEE--cc---CCCHHHHHHHH--------------HHHHhcC--CCceEEEecC-Ch
Q 010610 270 TLPSITEKDWDDIKFGVDNKVDFYAV--SF---VKDAQVVHELK--------------NYLKSCG--ADIHVIVKIE-SA 327 (506)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~Ial--Sf---V~saedV~~lr--------------~~l~~~~--~~i~IIaKIE-t~ 327 (506)
..|.+ +.-.+.++...+.|+|++=+ || +-+...|+.+- +.+++.. .+++++.+.. ++
T Consensus 9 G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 9 GDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 44554 33455567777789998654 45 44544554321 2222211 1455556555 43
Q ss_pred ---hhhhhHHH-HHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 328 ---DSIPNLHS-IITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 328 ---~aveNlde-Il~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
.|++++=+ ..+. +||+++- || |+| -.++++..|+++|...+++
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE
Confidence 24455433 3333 7999995 55 433 4678999999999977765
No 119
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=85.11 E-value=26 Score=37.86 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=82.8
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceE-EEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCc
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHV-IVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEE 358 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~I-IaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~ 358 (506)
+++.+.+.|+|+|.++.-.+...+.++.+++++.|..+.+ +.-.+ ..++.+.++.+. +|.|-+++|--+-..+..
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~--t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~- 149 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVP--DPVKRAVELEELGVDYINVHVGIDQQMLGKD- 149 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCC--CHHHHHHHHHhcCCCEEEEEeccchhhcCCC-
Confidence 7788899999999976433434566677777666554332 11222 235556666665 899988876432222221
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHH
Q 010610 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (506)
Q Consensus 359 V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~ 436 (506)
.....+++. ...+.|+.+...+ +. ..+..++..|+|++.+..--..-+-|.++++.+.+.+.
T Consensus 150 ~~~~l~~l~---~~~~iPI~a~GGI----------~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 150 PLELLKEVS---EEVSIPIAVAGGL----------DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred hHHHHHHHH---hhCCCcEEEECCC----------CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 122223332 2346888766421 21 23667889999999887655555568888887776654
No 120
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.05 E-value=26 Score=35.75 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=80.1
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcH
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEV 359 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V 359 (506)
+-++.+.+.|+|+|.++..- .++..++.+.+++.|-+.-.+..=.| -.+.+..|++.++|.+-.=.-.|+.=--..+
T Consensus 110 ~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~ 186 (263)
T CHL00200 110 KFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGVTGLKTEL 186 (263)
T ss_pred HHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCCCCCCccc
Confidence 45677889999999999875 57888888999888876555554445 3678999999999655431112221111245
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 360 PLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 360 ~~~Qk~II~~c~~~-GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
+.-.+.+++..+++ ++|+.+-- ..=+. .++......|+|+++.-
T Consensus 187 ~~~~~~~i~~ir~~t~~Pi~vGF---------GI~~~---e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 187 DKKLKKLIETIKKMTNKPIILGF---------GISTS---EQIKQIKGWNINGIVIG 231 (263)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEC---------CcCCH---HHHHHHHhcCCCEEEEC
Confidence 55556666666644 78877642 22222 24667777899999874
No 121
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=84.93 E-value=25 Score=36.11 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=95.1
Q ss_pred CCceEEE---ecCC---hhhhhhHHHHHHh-----CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh
Q 010610 316 ADIHVIV---KIES---ADSIPNLHSIITA-----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML 384 (506)
Q Consensus 316 ~~i~IIa---KIEt---~~aveNldeIl~~-----sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL 384 (506)
.++.+++ .+|. .++++|++.+++. +|+++.-+|=+..--+ --.+.+|.|+- |
T Consensus 22 G~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~--------------~y~~dvplivk---l 84 (265)
T COG1830 22 GRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARSVHR--------------GYAHDVPLIVK---L 84 (265)
T ss_pred CCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEecHhHHhhcCc--------------cccCCcCEEEE---e
Confidence 3455555 3555 2477777777664 5777766553321111 11235777763 4
Q ss_pred hhhhcCCCCC-hhh--cccHHHHHHhCcceeEeeccccCC-CCHHHHHHHHHHHHHHHhccc-cC-CCCCCCCCcCcC--
Q 010610 385 ESMIVHPTPT-RAE--VSDIAIAVREGADAVMLSGETAHG-KFPLKAVKVMHTVSLRTEATI-TG-GAMPPNLGQAFK-- 456 (506)
Q Consensus 385 eSMi~~~~Pt-RAE--v~Dvanav~dG~D~vmLs~ETA~G-~yPveaV~~m~~I~~~aE~~~-~~-~~~~~~~~~~~~-- 456 (506)
.++.+ ..|+ +-. +..+=.++..|+|++-.+ -.+| .+--+.++.+.++...+..+- +. ...|.. ....+
T Consensus 85 ~~~t~-l~~~~~~~~~~~~ve~ai~lgadAV~~~--Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpR-g~~~~~~ 160 (265)
T COG1830 85 NGSTS-LSPDPNDQVLVATVEDAIRLGADAVGAT--VYVGSETEREMIENISQVVEDAHELGMPLVAWAYPR-GPAIKDE 160 (265)
T ss_pred ccccc-cCCCcccceeeeeHHHHHhCCCcEEEEE--EecCCcchHHHHHHHHHHHHHHHHcCCceEEEEecc-CCccccc
Confidence 44422 2222 222 666778999999998642 1122 223678888888888888651 10 001110 11111
Q ss_pred -CChHHHHHHHHHHHHhhcCceEEE--EcCChHHHHHHHhhCCCCeEEE
Q 010610 457 -NHMSEMFAYHATMMSNTLGTSIVV--FTRTGFMAILLSHYRPSGTIFA 502 (506)
Q Consensus 457 -~~~~~~ia~~av~~A~~~~a~Iiv--~T~sG~tA~~lS~~RP~~pIia 502 (506)
....+.++. |.+++.++||-||= +|.+-.+-+++-++-| +||+-
T Consensus 161 ~~~d~~~v~~-aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~-vpVvi 207 (265)
T COG1830 161 YHRDADLVGY-AARLAAELGADIIKTKYTGDPESFRRVVAACG-VPVVI 207 (265)
T ss_pred ccccHHHHHH-HHHHHHHhcCCeEeecCCCChHHHHHHHHhCC-CCEEE
Confidence 234566665 56899999995544 6766699999999999 99873
No 122
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.87 E-value=9.2 Score=40.64 Aligned_cols=129 Identities=21% Similarity=0.241 Sum_probs=87.8
Q ss_pred ccCHHHhHhhHhcCCcEEEEccC----------CCHHHHHHHHHHHHhcCCCceEEEec-CChhh----hhhHHHHHHh-
Q 010610 276 EKDWDDIKFGVDNKVDFYAVSFV----------KDAQVVHELKNYLKSCGADIHVIVKI-ESADS----IPNLHSIITA- 339 (506)
Q Consensus 276 ekD~~dI~~al~~gvD~IalSfV----------~saedV~~lr~~l~~~~~~i~IIaKI-Et~~a----veNldeIl~~- 339 (506)
..++++++.+++.|+|.|-+.+= =+-+|+.+..+++.++|.+..+..-+ =.... .+-++...+.
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~G 92 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELG 92 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcC
Confidence 35789999999999999988844 56788999999999999876544421 11111 3334455444
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcC--CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecc
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMG--KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~G--kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~E 417 (506)
.|+|+++ |+| ++..+++.+ .|+.+.||+.= .| + ..+--+-..|+.-++|+-|
T Consensus 93 vDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~v---~N-----~--~~~~f~~~~G~~rvVl~rE 146 (347)
T COG0826 93 VDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQANV---TN-----A--ETAKFWKELGAKRVVLPRE 146 (347)
T ss_pred CCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEec---CC-----H--HHHHHHHHcCCEEEEeCcc
Confidence 7999995 554 477888888 99999998651 11 1 1133456669999999977
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q 010610 418 TAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 418 TA~G~yPveaV~~m~~I~~~a 438 (506)
.+ ...+.+|.+++
T Consensus 147 ls--------~~ei~~i~~~~ 159 (347)
T COG0826 147 LS--------LEEIKEIKEQT 159 (347)
T ss_pred CC--------HHHHHHHHHhC
Confidence 53 44455555554
No 123
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=84.32 E-value=38 Score=32.13 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=77.9
Q ss_pred HHhHhhHhcCCcEEEEc-----cCCC-HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCccc
Q 010610 280 DDIKFGVDNKVDFYAVS-----FVKD-AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGA 352 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-----fV~s-aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgv 352 (506)
++++.+.+.|+|.|-+- |+.+ ......++++-...+..+.+..+....+ +-++.+.+. +||+.+- +
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh-~---- 87 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVH-P---- 87 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEc-c----
Confidence 55677788899999883 7654 3223333333322222333446666543 446666655 7998873 1
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec--cccCC-CCHHHHHH
Q 010610 353 ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG--ETAHG-KFPLKAVK 429 (506)
Q Consensus 353 elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~--ETA~G-~yPveaV~ 429 (506)
... ......++.++++|..+++... +. |.. +....+..++|.+++-+ .+..| +++...++
T Consensus 88 --~~~---~~~~~~~~~~~~~g~~~~~~~~--------~~-t~~---e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~ 150 (210)
T TIGR01163 88 --EAS---EHIHRLLQLIKDLGAKAGIVLN--------PA-TPL---EFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLE 150 (210)
T ss_pred --CCc---hhHHHHHHHHHHcCCcEEEEEC--------CC-CCH---HHHHHHHhhCCEEEEEEEcCCCCcccccHHHHH
Confidence 111 1235677899999988777531 11 122 24455667889887632 12233 56677777
Q ss_pred HHHHHHHHHh
Q 010610 430 VMHTVSLRTE 439 (506)
Q Consensus 430 ~m~~I~~~aE 439 (506)
.++++.+...
T Consensus 151 ~i~~i~~~~~ 160 (210)
T TIGR01163 151 KIREVRKMID 160 (210)
T ss_pred HHHHHHHHHH
Confidence 7777765544
No 124
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=84.22 E-value=53 Score=35.12 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=93.0
Q ss_pred CCccCHHHhH-hhHhcCCcEEEEccCCC-HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEE--cCC
Q 010610 274 ITEKDWDDIK-FGVDNKVDFYAVSFVKD-AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMV--ARG 348 (506)
Q Consensus 274 ltekD~~dI~-~al~~gvD~IalSfV~s-aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImI--aRG 348 (506)
+|..++..|. ...+.|+|.|=+.|-.. .++.+.++.+. +.+.+..+++-.-. -.+.++..++. .|.|-+ .-.
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~S 99 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLGLNASILALNRA--VKSDIDASIDCGVDAVHIFIATS 99 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcCC
Confidence 3445555554 44578999987766443 34444555443 34555555554222 13344544444 464433 333
Q ss_pred Ccc----cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH-HHhCcceeEeeccccCCCC
Q 010610 349 DLG----AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGKF 423 (506)
Q Consensus 349 DLg----velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana-v~dG~D~vmLs~ETA~G~y 423 (506)
|+- .-...++.....++.++.|++.|..|.+.. ....+-+...+.+++.. ...|+|.+.|. +|.=.-+
T Consensus 100 d~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~~ 172 (378)
T PRK11858 100 DIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGILD 172 (378)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCCC
Confidence 321 112234556667788999999999887652 12333344455555554 55699999995 8988899
Q ss_pred HHHHHHHHHHHHHHH
Q 010610 424 PLKAVKVMHTVSLRT 438 (506)
Q Consensus 424 PveaV~~m~~I~~~a 438 (506)
|.+.-+.+..+.+..
T Consensus 173 P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 173 PFTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999998888887655
No 125
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=83.58 E-value=13 Score=36.22 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=66.1
Q ss_pred cCHHHhHhhHhcCCcEEEEcc--CCCHHHHHHHHHHHHhcCCC-ceEEEe-----cCC--------hhhhhhHHHHHHh-
Q 010610 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGAD-IHVIVK-----IES--------ADSIPNLHSIITA- 339 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSf--V~saedV~~lr~~l~~~~~~-i~IIaK-----IEt--------~~aveNldeIl~~- 339 (506)
.+.++++.+++.|+|.|.++- .++++.+ +++.++.+.+ +.+-.. +++ ..-++-+..+.+.
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~---~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPDLV---KELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHHHH---HHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 478899999999999887762 3445444 4445554532 321111 111 1112222223333
Q ss_pred CCEEEEcCCCccc---CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec
Q 010610 340 SDGAMVARGDLGA---ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 340 sDGImIaRGDLgv---elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ 416 (506)
+|++++. |+.. .-|. ++ +.+-+.++....|++.+.. .-+. .|+..+...|+|++|+..
T Consensus 159 ~~~ii~~--~~~~~g~~~g~-~~----~~i~~i~~~~~ipvia~GG---------i~~~---~di~~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 159 LEGIIYT--DISRDGTLSGP-NF----ELTKELVKAVNVPVIASGG---------VSSI---DDLIALKKLGVYGVIVGK 219 (230)
T ss_pred CCEEEEE--eecCCCCcCCC-CH----HHHHHHHHhCCCCEEEeCC---------CCCH---HHHHHHHHCCCCEEEEeH
Confidence 6888863 2222 2232 21 2222233446799998753 3333 456666678999999864
Q ss_pred cccCCCCH
Q 010610 417 ETAHGKFP 424 (506)
Q Consensus 417 ETA~G~yP 424 (506)
=--.|++|
T Consensus 220 a~~~~~~~ 227 (230)
T TIGR00007 220 ALYEGKIT 227 (230)
T ss_pred HHHcCCCC
Confidence 33334443
No 126
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.57 E-value=30 Score=34.37 Aligned_cols=144 Identities=11% Similarity=0.038 Sum_probs=89.8
Q ss_pred HHHhHhhHhcCCcEEEEccCC----------CHHHHHHHHHHHHhcCCCceEEE-------ec---C---ChhhhhhHHH
Q 010610 279 WDDIKFGVDNKVDFYAVSFVK----------DAQVVHELKNYLKSCGADIHVIV-------KI---E---SADSIPNLHS 335 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~----------saedV~~lr~~l~~~~~~i~IIa-------KI---E---t~~aveNlde 335 (506)
.+.++++.++|.|+|=+++.. +.+++.++++.+++.|-.+.-+. -+ + ..++++++..
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~ 98 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKK 98 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHH
Confidence 456788899999999887543 46789999999999886654332 01 1 1246777777
Q ss_pred HHHh-----CCEEEEcCCCcccCC----CCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHH
Q 010610 336 IITA-----SDGAMVARGDLGAEL----PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR 406 (506)
Q Consensus 336 Il~~-----sDGImIaRGDLgvel----g~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~ 406 (506)
.++. ++.|.+..++...+- .++++....+++...+.++|..+.+ |.|-.+-.++.++..++...+
T Consensus 99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v- 172 (284)
T PRK13210 99 AIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI- 172 (284)
T ss_pred HHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc-
Confidence 7765 567777544322111 1234455567788889999987664 333333355666666666665
Q ss_pred hCcceeEeecccc----CCCCHHHHHH
Q 010610 407 EGADAVMLSGETA----HGKFPLKAVK 429 (506)
Q Consensus 407 dG~D~vmLs~ETA----~G~yPveaV~ 429 (506)
+.+.+-+.-++. .|..|.+.++
T Consensus 173 -~~~~~~~~~D~~h~~~~~~~~~~~l~ 198 (284)
T PRK13210 173 -DSPWLTVYPDVGNLSAWGNDVWSELK 198 (284)
T ss_pred -CCCceeEEecCChhhhcCCCHHHHHH
Confidence 345555555552 3666766554
No 127
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=83.57 E-value=15 Score=34.85 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=66.5
Q ss_pred CccCHHHhHhhHhcCCcEEEE--ccCCC--HHHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHh-CCEEEEcC
Q 010610 275 TEKDWDDIKFGVDNKVDFYAV--SFVKD--AQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~Ial--SfV~s--aedV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDGImIaR 347 (506)
+..+...+..++..++++|=+ +|+.. .+.++.+++. ..+..+++ |+.+.. -.-+++..+. +|++.+-
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~----~~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h- 84 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREA----FPDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL- 84 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE-
Confidence 334444454455455898877 56532 2344444432 23455555 777663 1123555554 7888762
Q ss_pred CCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 348 GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 348 GDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
.+..+...+++++.|+++|++++++. + . .-|.. +...+...|+|.+.+.
T Consensus 85 --------~~~~~~~~~~~i~~~~~~g~~~~v~~--~----~--~~t~~---e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 --------GAAPLSTIKKAVKAAKKYGKEVQVDL--I----G--VEDPE---KRAKLLKLGVDIVILH 133 (202)
T ss_pred --------eeCCHHHHHHHHHHHHHcCCeEEEEE--e----C--CCCHH---HHHHHHHCCCCEEEEc
Confidence 12223456789999999999999741 0 0 11222 3445777899998873
No 128
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.52 E-value=47 Score=33.31 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCccCHHHh-HhhHhcCCcEEEEccCCCH-HHHHHHHHHHHhcCCCceEEEec-CChhhhhhHHHHHHh-CCEEEEc--C
Q 010610 274 ITEKDWDDI-KFGVDNKVDFYAVSFVKDA-QVVHELKNYLKSCGADIHVIVKI-ESADSIPNLHSIITA-SDGAMVA--R 347 (506)
Q Consensus 274 ltekD~~dI-~~al~~gvD~IalSfV~sa-edV~~lr~~l~~~~~~i~IIaKI-Et~~aveNldeIl~~-sDGImIa--R 347 (506)
+|..++..| +...+.|+|.|=+.|-... .+.+.++.+. +.+....+.+-. -+.+++ +...+. .|.|-+. -
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~-~~~~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~~~~ 92 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIV-ALGLPARLIVWCRAVKEDI---EAALRCGVTAVHISIPV 92 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEeccCCHHHH---HHHHhCCcCEEEEEEec
Confidence 444454444 4556789999977654433 3334454444 333445554432 233333 333333 4654442 1
Q ss_pred CCc----ccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH-HHhCcceeEeeccccCCC
Q 010610 348 GDL----GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGK 422 (506)
Q Consensus 348 GDL----gvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana-v~dG~D~vmLs~ETA~G~ 422 (506)
.|. -.....++.....+.+++.|+++|..|.+.. ....+-+..++.+++.. ...|+|.+.|. +|.=.-
T Consensus 93 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~ 165 (259)
T cd07939 93 SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVGIL 165 (259)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCCCC
Confidence 111 0011123344556789999999999876543 12234445566666664 45699999994 899899
Q ss_pred CHHHHHHHHHHHHHHH
Q 010610 423 FPLKAVKVMHTVSLRT 438 (506)
Q Consensus 423 yPveaV~~m~~I~~~a 438 (506)
+|.+.-+.+..+.+..
T Consensus 166 ~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 166 DPFTTYELIRRLRAAT 181 (259)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999888887777544
No 129
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.62 E-value=18 Score=34.48 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=72.2
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH----hCCEEEEcCCCcccCCC-
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT----ASDGAMVARGDLGAELP- 355 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~----~sDGImIaRGDLgvelg- 355 (506)
+++.+.+.|+|+|.++.-.. ....++.+. +....+-+-+- +.+++.+ -+|.|.+++-.=+..=+
T Consensus 73 ~~~~a~~~gad~vh~~~~~~--~~~~~~~~~---~~~~~~g~~~~------t~~e~~~a~~~gaD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 73 RVDLALAVGADGVHLGQDDL--PVADARALL---GPDAIIGLSTH------TLEEAAAALAAGADYVGVGPIFPTPTKKD 141 (212)
T ss_pred hHHHHHHcCCCEEecCcccC--CHHHHHHHc---CCCCEEEEeCC------CHHHHHHHhHcCCCEEEECCccCCCCCCC
Confidence 45678889999998875321 233333322 23333333332 3333333 37999987533222111
Q ss_pred CC-cH-HHHHHHHHHHHHHcC-CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHH
Q 010610 356 IE-EV-PLLQEEIIRTCRSMG-KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 432 (506)
Q Consensus 356 ~e-~V-~~~Qk~II~~c~~~G-kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~ 432 (506)
.. .. ....+++.+ ... .|++....+ +. .++..+...|+|++.+.+--..-+-|.++++.+.
T Consensus 142 ~~~~~g~~~~~~~~~---~~~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~ 205 (212)
T PRK00043 142 AKAPQGLEGLREIRA---AVGDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALL 205 (212)
T ss_pred CCCCCCHHHHHHHHH---hcCCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHH
Confidence 00 00 222222322 223 888876532 21 3577888899999998655444466999999888
Q ss_pred HHHHHH
Q 010610 433 TVSLRT 438 (506)
Q Consensus 433 ~I~~~a 438 (506)
+++.++
T Consensus 206 ~~~~~~ 211 (212)
T PRK00043 206 AAFRAA 211 (212)
T ss_pred HHHhhc
Confidence 776543
No 130
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=82.49 E-value=3 Score=44.41 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=42.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 108 r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
.+-.+-+.+||.-++.|..+.|+++|+|++=|.-+||..+...++++.+|+
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~ 145 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK 145 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH
Confidence 456688889999899999999999999999999999999877777776664
No 131
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=81.87 E-value=22 Score=41.11 Aligned_cols=155 Identities=17% Similarity=0.235 Sum_probs=96.8
Q ss_pred HHHhHhhHhcCCcEEE--EccCCCHHHHHHHHHHHHhcCCCceEEEecC--ChhhhhhHHHHHHhCCEEEEcCCCcccCC
Q 010610 279 WDDIKFGVDNKVDFYA--VSFVKDAQVVHELKNYLKSCGADIHVIVKIE--SADSIPNLHSIITASDGAMVARGDLGAEL 354 (506)
Q Consensus 279 ~~dI~~al~~gvD~Ia--lSfV~saedV~~lr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~sDGImIaRGDLgvel 354 (506)
.+.|+...+.|+|+|- ++-.+.|+.+..+++.|.+.|.+++++|-|- -.-|++ -++.+|.|-|-||.++-.-
T Consensus 113 v~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~----a~~~vdkiRINPGN~~~~~ 188 (733)
T PLN02925 113 VDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALR----VAECFDKIRVNPGNFADRR 188 (733)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHH----HHHhcCCeEECCcccCCcc
Confidence 4445666789999964 5556666666777777777888999999774 333443 2233899999999998762
Q ss_pred C---------------CCcHHHHHHHHHHHHHHcCCcEEEEehh--hhh-hhcCCCCChhh-----cccHHHHHHhCcce
Q 010610 355 P---------------IEEVPLLQEEIIRTCRSMGKAVIVATNM--LES-MIVHPTPTRAE-----VSDIAIAVREGADA 411 (506)
Q Consensus 355 g---------------~e~V~~~Qk~II~~c~~~GkPvivATqm--LeS-Mi~~~~PtRAE-----v~Dvanav~dG~D~ 411 (506)
- ++++..--..++.+|+++|+|+=+-++- |+. +...--+|..- +.-+--+-..|++-
T Consensus 189 k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~d 268 (733)
T PLN02925 189 AQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHN 268 (733)
T ss_pred ccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCc
Confidence 1 1233334457999999999998766541 110 01110112111 12233456788999
Q ss_pred eEeeccccCCCCHHHHHHHHHHHHHHHhc
Q 010610 412 VMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (506)
Q Consensus 412 vmLs~ETA~G~yPveaV~~m~~I~~~aE~ 440 (506)
+++| ..-..|...|...+.++.+.+.
T Consensus 269 iviS---~KsSn~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 269 FVFS---MKASNPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred EEEE---EEcCChHHHHHHHHHHHHHHHh
Confidence 9998 4555566777666666666443
No 132
>PRK04302 triosephosphate isomerase; Provisional
Probab=81.79 E-value=33 Score=33.69 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=76.7
Q ss_pred hHhhHhcCCcEEEEccCC---CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCC-CcccCCCC
Q 010610 282 IKFGVDNKVDFYAVSFVK---DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARG-DLGAELPI 356 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~---saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRG-DLgvelg~ 356 (506)
++...+.|+|+|.++.-+ ..+++.+..+...+. .+.+|.-+-+ .+.+..+.+. .|.|-+.+- -.|...+.
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~--Gl~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~~ 152 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL--GLESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIPV 152 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC--CCeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCCC
Confidence 566778999999999863 334444444444443 3444443333 3444444443 355544443 33433332
Q ss_pred C-cHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHH
Q 010610 357 E-EVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 432 (506)
Q Consensus 357 e-~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~ 432 (506)
. ..+...+++++..++. +.|++... ..=+ -.++..+...|+|+++..+-...-..|.+.++-+.
T Consensus 153 ~~~~~~~i~~~~~~ir~~~~~~pvi~Gg---------gI~~---~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 153 SKAKPEVVEDAVEAVKKVNPDVKVLCGA---------GIST---GEDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred CcCCHHHHHHHHHHHHhccCCCEEEEEC---------CCCC---HHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 1 2345556666777763 57887542 1212 23466777899999998776666666766665443
No 133
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=81.15 E-value=16 Score=38.84 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=95.1
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHH
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVP 360 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~ 360 (506)
.|+...+.|+|.|-+. |.+.++.+.++++.+ +.+++++|-|-=- =-..+.++.+-+|.+-|-||.+|- .
T Consensus 39 QI~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHFd-~~lAl~a~~~g~dkiRINPGNig~-------~ 107 (346)
T TIGR00612 39 QIRALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHFD-YRLAALAMAKGVAKVRINPGNIGF-------R 107 (346)
T ss_pred HHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCCC-cHHHHHHHHhccCeEEECCCCCCC-------H
Confidence 3455567999998887 678888888877664 5679999977431 112244555568999999999876 4
Q ss_pred HHHHHHHHHHHHcCCcEEEEeh--hhhh--hhcCCCCChhh-----cccHHHHHHhCcceeEeeccccCCCCHHHHHHHH
Q 010610 361 LLQEEIIRTCRSMGKAVIVATN--MLES--MIVHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (506)
Q Consensus 361 ~~Qk~II~~c~~~GkPvivATq--mLeS--Mi~~~~PtRAE-----v~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m 431 (506)
.--+.++++|+++|+|+=+-.+ -|+. |.++..||..- +..+.-+-..|++=+.+| .....+..+|+.-
T Consensus 108 e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS---~KsSdv~~~i~ay 184 (346)
T TIGR00612 108 ERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLS---MKASDVAETVAAY 184 (346)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHHHHH
Confidence 5568899999999999755432 2222 22333455432 222334566789989988 3445566666666
Q ss_pred HHHHHHHh
Q 010610 432 HTVSLRTE 439 (506)
Q Consensus 432 ~~I~~~aE 439 (506)
+.++++.+
T Consensus 185 r~la~~~d 192 (346)
T TIGR00612 185 RLLAERSD 192 (346)
T ss_pred HHHHhhCC
Confidence 65554443
No 134
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=80.68 E-value=52 Score=31.11 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=77.5
Q ss_pred HHhHhhHhcCCcEEEE-----ccCCCH----HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCC
Q 010610 280 DDIKFGVDNKVDFYAV-----SFVKDA----QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD 349 (506)
Q Consensus 280 ~dI~~al~~gvD~Ial-----SfV~sa----edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGD 349 (506)
+.++.+.+.|+|+|-+ +|+.+. +.++++++.. +....+-.++.++ .+.++.+.+. +||+.|-
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~--~~~~~~~~~~g~dgv~vh--- 87 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENP--ERYIEAFAKAGADIITFH--- 87 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCH--HHHHHHHHHcCCCEEEEC---
Confidence 3467788999999999 776544 4555555433 2233344666665 3346666665 7998763
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec--cccCC-CCHHH
Q 010610 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG--ETAHG-KFPLK 426 (506)
Q Consensus 350 Lgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~--ETA~G-~yPve 426 (506)
.+.. ....+.++.+++.|..+++.+. |+.. .+....+..++|.+++.+ .|..| .++..
T Consensus 88 ----~~~~---~~~~~~~~~~~~~~~~~g~~~~----------~~~~--~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 88 ----AEAT---DHLHRTIQLIKELGMKAGVALN----------PGTP--VEVLEPYLDEVDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred ----ccch---hhHHHHHHHHHHCCCeEEEEec----------CCCC--HHHHHHHHhhCCEEEEEEECCCCCCcccCHH
Confidence 1111 1224558889999998888642 1111 112344455578776532 13233 57777
Q ss_pred HHHHHHHHHHHHh
Q 010610 427 AVKVMHTVSLRTE 439 (506)
Q Consensus 427 aV~~m~~I~~~aE 439 (506)
..+.++++.+...
T Consensus 149 ~~~~i~~~~~~~~ 161 (211)
T cd00429 149 VLEKIRKLRELIP 161 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665553
No 135
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=80.52 E-value=12 Score=38.55 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=57.1
Q ss_pred HHhHhhHhcCCcEEEE-------ccCCCHHHHHHHHHHHHhcCCCceEEEecC--ChhhhhhHHHHHHh-CCEEEEcCCC
Q 010610 280 DDIKFGVDNKVDFYAV-------SFVKDAQVVHELKNYLKSCGADIHVIVKIE--SADSIPNLHSIITA-SDGAMVARGD 349 (506)
Q Consensus 280 ~dI~~al~~gvD~Ial-------SfV~saedV~~lr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~-sDGImIaRGD 349 (506)
+.++|.+++|+|+|++ +.....|-.+-++...+..+.++.||+-+- +.++++.....-+. +|++|+.+-.
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 3457889999999977 333444444445555566677788888773 22333333333333 7999998765
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 350 Lgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
+. ....+.+...-+. .|.+.+.|+++.
T Consensus 112 y~-~~~~~~i~~~f~~---va~~~~lpi~lY 138 (303)
T PRK03620 112 LT-EAPQEGLAAHVEA---VCKSTDLGVIVY 138 (303)
T ss_pred CC-CCCHHHHHHHHHH---HHHhCCCCEEEE
Confidence 43 1122233333333 455668898865
No 136
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=80.19 E-value=12 Score=38.06 Aligned_cols=97 Identities=9% Similarity=0.036 Sum_probs=58.6
Q ss_pred HHhHhhHhc-CCcEEEEc-------cCCCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhhHHHHHHh-CCEEEEcC
Q 010610 280 DDIKFGVDN-KVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 280 ~dI~~al~~-gvD~IalS-------fV~saedV~~lr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDGImIaR 347 (506)
+.+++.++. |+++|++. +....|-.+-++..++..+.++.||+.+- +.++++......+. +|++|+.+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 445788899 99998663 33334444444445555566789999885 45666666555555 89999865
Q ss_pred CCcccCCCCCcHHHHHHHHHHHHHHc-CCcEEEE
Q 010610 348 GDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVA 380 (506)
Q Consensus 348 GDLgvelg~e~V~~~Qk~II~~c~~~-GkPvivA 380 (506)
-...- ..-+++...-+ .-|.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~~~~---~v~~a~~~lpi~iY 134 (288)
T cd00954 105 PFYYK-FSFEEIKDYYR---EIIAAAASLPMIIY 134 (288)
T ss_pred CCCCC-CCHHHHHHHHH---HHHHhcCCCCEEEE
Confidence 43311 22233333333 345566 7898875
No 137
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.93 E-value=9.2 Score=37.84 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=66.2
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCC--------CcccCCCCC--cHHH
Q 010610 292 FYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG--------DLGAELPIE--EVPL 361 (506)
Q Consensus 292 ~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRG--------DLgvelg~e--~V~~ 361 (506)
.|++=...++++..++-+.+.+.|-++.=|. .-++++++.+.++.+..+.++||-| +.+.+.|.+ -.|.
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 3444455677777777666665554432222 5677777777777666555666644 112222211 1233
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
.-..+++.|++++.|.+=- .-|..| +..+...|+|.+=|
T Consensus 96 ~~~~vi~~a~~~~i~~iPG-----------~~TptE---i~~a~~~Ga~~vKl 134 (212)
T PRK05718 96 LTPPLLKAAQEGPIPLIPG-----------VSTPSE---LMLGMELGLRTFKF 134 (212)
T ss_pred CCHHHHHHHHHcCCCEeCC-----------CCCHHH---HHHHHHCCCCEEEE
Confidence 4458999999999998721 112333 78899999999988
No 138
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=79.87 E-value=37 Score=34.40 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=74.3
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCE-EEE-cCCCcccCCCCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDG-AMV-ARGDLGAELPIE 357 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDG-ImI-aRGDLgvelg~e 357 (506)
+.++.+.+.|+|+|.++..- .++..++.+.+++.|-....+..=.| ..+.+..|++.+|| |++ ++...+ |..
T Consensus 106 ~f~~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~T---G~~ 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADLP-LEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVT---GAR 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCC---CCc
Confidence 45677889999999999864 47788888888888776554444444 36788999999883 333 332111 111
Q ss_pred -cHHHHHHHHHHHHHH-cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 358 -EVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 358 -~V~~~Qk~II~~c~~-~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
.+..-....++..++ .++|+++-. ..=|. .++..+...|+|+++..
T Consensus 180 ~~~~~~~~~~i~~lr~~~~~pi~vgf---------GI~~~---e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 180 NRAASALNELVKRLKAYSAKPVLVGF---------GISKP---EQVKQAIDAGADGVIVG 227 (256)
T ss_pred ccCChhHHHHHHHHHhhcCCCEEEeC---------CCCCH---HHHHHHHHcCCCEEEEC
Confidence 122223344444443 467877653 22222 25778888999998874
No 139
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=79.44 E-value=12 Score=35.35 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=77.8
Q ss_pred eecCCCCccccccccccccccccccccccccccCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCCh---
Q 010610 70 VPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDH--- 146 (506)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~--- 146 (506)
+|++||....|+++|++|...+ ++..+.+-+| -+||+.
T Consensus 6 ~~lT~eg~~~L~~EL~~L~~~r-------------------------------~~i~~~i~~A--------r~~GDlsEN 46 (158)
T PRK05892 6 KGLAPAARDHLEAELARLRARR-------------------------------DRLAVEVNDR--------GMIGDHGDQ 46 (158)
T ss_pred CccCHHHHHHHHHHHHHHHHHh-------------------------------HHHHHHHHHH--------HhCCCcchh
Confidence 5799999999999999887421 2333444333 245542
Q ss_pred -------HHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCCCeEe--cCCCEEEEEEec---CCC---CceEEE
Q 010610 147 -------ASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITL--TSGQEFTFTIQR---GVG---SAECVS 211 (506)
Q Consensus 147 -------e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~~i~L--k~G~~v~lt~~~---~~~---~~~~i~ 211 (506)
+....+-..|++....+. +- .|. +...-+++.|.. +.| ..|++.++++-. ... ..+.|+
T Consensus 47 aey~aak~~q~~~e~RI~~L~~~L~-~A-~ii-~~~~~~V~~Gs~---Vtl~~~~g~~~~~~IVg~~e~d~~~~~~~~IS 120 (158)
T PRK05892 47 AEAIQRADELARLDDRINELDRRLR-TG-PTP-WSGSETLPGGTE---VTLRFPDGEVETMHVISVVEETPVGREAETLT 120 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-hC-EEe-cCCCCEEEcCcE---EEEEECCCCEEEEEEeCchhcCcccccCCEEc
Confidence 333344455666666654 21 222 666678888865 434 467776665441 111 245677
Q ss_pred eccc--hhhhhcCCCCEEEEe--CCeEEEEEEEEe
Q 010610 212 VNYD--DFVNDVEVGDMLLVD--GGMMSLLVKSKT 242 (506)
Q Consensus 212 v~~~--~l~~~v~~Gd~IliD--DG~i~l~V~~~~ 242 (506)
+..| .-+=.-++||.|-+. +|...++|+++.
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~g~~~~eI~~I~ 155 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQGPAQVELLAVK 155 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCCCcEEEEEEEEE
Confidence 6655 122345899999986 788899998875
No 140
>PRK00915 2-isopropylmalate synthase; Validated
Probab=79.40 E-value=81 Score=35.23 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=98.4
Q ss_pred CCccCHHHhH-hhHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh---C--C--EEE
Q 010610 274 ITEKDWDDIK-FGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA---S--D--GAM 344 (506)
Q Consensus 274 ltekD~~dI~-~al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~---s--D--GIm 344 (506)
+|..++..|. ...+.|+|.|=+.| .-++.|...++.+... ..+..+.+-.-.. .+.+|..++. + + .++
T Consensus 23 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~-~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIART-VKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhh-CCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEEE
Confidence 4556665554 44578999998877 5688888888776543 4455555544221 2334444432 2 2 355
Q ss_pred EcCCCccc----CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhh---cccHHHH-HHhCcceeEeec
Q 010610 345 VARGDLGA----ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE---VSDIAIA-VREGADAVMLSG 416 (506)
Q Consensus 345 IaRGDLgv----elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAE---v~Dvana-v~dG~D~vmLs~ 416 (506)
++-.|+-+ -...+++.....+.++.|+++|.-|.+... .-+|++ +.+++.+ ...|+|.+-|.
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e---------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~- 169 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE---------DATRTDLDFLCRVVEAAIDAGATTINIP- 169 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC---------CCCCCCHHHHHHHHHHHHHcCCCEEEEc-
Confidence 55455422 123346666778899999999998876532 233444 5555554 45699999985
Q ss_pred cccCCCCHHHHHHHHHHHHHHH
Q 010610 417 ETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 417 ETA~G~yPveaV~~m~~I~~~a 438 (506)
+|.=+-+|.+.-+++..+.+..
T Consensus 170 DTvG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 170 DTVGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred cCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999988888887554
No 141
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=79.32 E-value=40 Score=34.23 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|++.|.|+.+.. |..+...-+...-..|++.+...+... + ..-++++...++.++-+..++
T Consensus 67 alA~~a~~~G~~~~i~v-----------p~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~~~- 132 (291)
T cd01561 67 GLAMVAAAKGYRFIIVM-----------PETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPNAFW- 132 (291)
T ss_pred HHHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCCcEE-
Confidence 34568999999998873 333333445667778999877742211 1 135777776666544211111
Q ss_pred CCCCCCCCcCcCCChHHHHH-HHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFA-YHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia-~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
...|.+ ....+.-. .-+.++.++++ . .||+.+-+|.++ +.+..+.|...|+++-+
T Consensus 133 ~~~~~~------p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~ 195 (291)
T cd01561 133 LNQFEN------PANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDP 195 (291)
T ss_pred ecCCCC------chHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 111110 01112222 33567888886 3 899988888876 45555679999999875
No 142
>PRK09389 (R)-citramalate synthase; Provisional
Probab=79.02 E-value=1.1e+02 Score=34.06 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=95.5
Q ss_pred CccCHHHh-HhhHhcCCcEEEEc-cCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCE--EEEcCCC
Q 010610 275 TEKDWDDI-KFGVDNKVDFYAVS-FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDG--AMVARGD 349 (506)
Q Consensus 275 tekD~~dI-~~al~~gvD~IalS-fV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDG--ImIaRGD 349 (506)
|..++..| +...+.|+|.|=+. ++.+..|.+.++.+.+. +.+..|.+-.-.. .+.++..++. .|. ++++-.|
T Consensus 22 s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~-~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~Sd 98 (488)
T PRK09389 22 TPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE-GLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTSD 98 (488)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc-CCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccCH
Confidence 44455544 45567999999764 46788888888776543 4456666655442 2335555544 454 3333334
Q ss_pred cccC----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH-HHhCcceeEeeccccCCCCH
Q 010610 350 LGAE----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGKFP 424 (506)
Q Consensus 350 Lgve----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana-v~dG~D~vmLs~ETA~G~yP 424 (506)
+-.+ ...+++...-...++.|+++|..|.+... ...+-+...+.+++.+ ...|+|.+.|. +|.=.-.|
T Consensus 99 ~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e------d~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~~P 171 (488)
T PRK09389 99 LHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE------DASRADLDFLKELYKAGIEAGADRICFC-DTVGILTP 171 (488)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe------eCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCcCH
Confidence 3211 22335556667788999999988776532 2333334445556554 45699999995 89889999
Q ss_pred HHHHHHHHHHHH
Q 010610 425 LKAVKVMHTVSL 436 (506)
Q Consensus 425 veaV~~m~~I~~ 436 (506)
.+.-+.+..+..
T Consensus 172 ~~~~~lv~~l~~ 183 (488)
T PRK09389 172 EKTYELFKRLSE 183 (488)
T ss_pred HHHHHHHHHHHh
Confidence 998887777654
No 143
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=79.00 E-value=31 Score=37.70 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=70.8
Q ss_pred CHHHhHhhHhcCCcEEEEcc-CCCHHHHHHHHHH-H--HhcC---CCceEEEecCChhhhhh---------HHHHHHh--
Q 010610 278 DWDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNY-L--KSCG---ADIHVIVKIESADSIPN---------LHSIITA-- 339 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSf-V~saedV~~lr~~-l--~~~~---~~i~IIaKIEt~~aveN---------ldeIl~~-- 339 (506)
+.+.++..+++|+..|..|. ..-...+...+.. + ...+ ....|++|+-+++-... ++.+.+.
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 34567888999999998875 3322222222221 0 0000 11459999877644411 1222222
Q ss_pred --------------CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc--------CCcEEEEehhhhhhhcCCCCChhh
Q 010610 340 --------------SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM--------GKAVIVATNMLESMIVHPTPTRAE 397 (506)
Q Consensus 340 --------------sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~--------GkPvivATqmLeSMi~~~~PtRAE 397 (506)
+|.|.+. .|=|-+.+.......--.|.+.+.+. ..|||.|.-+- |.
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~---------tg-- 231 (418)
T cd04742 164 ITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG---------TP-- 231 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC---------CH--
Confidence 5888887 77777765432222333344333322 58999886543 33
Q ss_pred cccHHHHHHhCcceeEe
Q 010610 398 VSDIAIAVREGADAVML 414 (506)
Q Consensus 398 v~Dvanav~dG~D~vmL 414 (506)
.+++-+...|+|+|++
T Consensus 232 -~~vaAA~alGAd~V~~ 247 (418)
T cd04742 232 -EAAAAAFALGADFIVT 247 (418)
T ss_pred -HHHHHHHHcCCcEEee
Confidence 3588999999999986
No 144
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.81 E-value=44 Score=34.32 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCCCccCHHHh--------HhhHhcCCcEEEEccC-------------CCH----------------HHHHHHHHHHHhc
Q 010610 272 PSITEKDWDDI--------KFGVDNKVDFYAVSFV-------------KDA----------------QVVHELKNYLKSC 314 (506)
Q Consensus 272 p~ltekD~~dI--------~~al~~gvD~IalSfV-------------~sa----------------edV~~lr~~l~~~ 314 (506)
..+|..|++.+ +.+.+.|+|+|=+-.- +.. +-++++|+. .
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~---~ 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA---V 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH---c
Confidence 46777777776 4567899999866543 121 223333333 3
Q ss_pred CCCceEEEecCChh----------hhhhHHHHHHh-CCEEEEcCCCcccCCCC----CcHHHHHHHHHHH-HHHcCCcEE
Q 010610 315 GADIHVIVKIESAD----------SIPNLHSIITA-SDGAMVARGDLGAELPI----EEVPLLQEEIIRT-CRSMGKAVI 378 (506)
Q Consensus 315 ~~~i~IIaKIEt~~----------aveNldeIl~~-sDGImIaRGDLgvelg~----e~V~~~Qk~II~~-c~~~GkPvi 378 (506)
+.+..|..||--.+ +++-+..+.+. .|.|-+..|+..-.... ..-.......++. .+..++|++
T Consensus 206 g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi 285 (327)
T cd02803 206 GPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVI 285 (327)
T ss_pred CCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEE
Confidence 66788999886432 22223333333 69998887765321110 0001112222222 234578988
Q ss_pred EEehhhhhhhcCCCCChhhcccHHHHHHh-CcceeEee
Q 010610 379 VATNMLESMIVHPTPTRAEVSDIAIAVRE-GADAVMLS 415 (506)
Q Consensus 379 vATqmLeSMi~~~~PtRAEv~Dvanav~d-G~D~vmLs 415 (506)
....+- |. .++..++.. |+|.|++.
T Consensus 286 ~~Ggi~---------t~---~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 286 AVGGIR---------DP---EVAEEILAEGKADLVALG 311 (327)
T ss_pred EeCCCC---------CH---HHHHHHHHCCCCCeeeec
Confidence 765332 22 346677877 79999985
No 145
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=78.81 E-value=14 Score=37.59 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=57.1
Q ss_pred HHhHhhHhcCCcEEEEc-------cCCCHHHHHHHHHHHHhcCCCceEEEecCC---hhhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-------fV~saedV~~lr~~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDGImIaRG 348 (506)
+.+++.++.|+|+|++. +....|-.+-++...+..+.++.|++-+=. .++++.....-+. +|++|+.+-
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34578889999999874 333344444444455555667889998743 3444444444333 799999864
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
... ..+-+.+...-+.| |.+.+.|+++.
T Consensus 103 ~y~-~~~~~~i~~~~~~i---~~~~~~pi~lY 130 (285)
T TIGR00674 103 YYN-KPTQEGLYQHFKAI---AEEVDLPIILY 130 (285)
T ss_pred cCC-CCCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 432 11223444444444 44557888865
No 146
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=78.75 E-value=37 Score=35.55 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=37.0
Q ss_pred CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec---cccCCCCHHHHHHHHHHHHHHHhccc
Q 010610 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG---ETAHGKFPLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 374 GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~---ETA~G~yPveaV~~m~~I~~~aE~~~ 442 (506)
..|+|....+- .-.|++.++..|+|+++++. ..... =+..+++++..+..+....+
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m 313 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAM 313 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 68988776433 23589999999999999974 11222 24455567777776666543
No 147
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=78.70 E-value=24 Score=36.84 Aligned_cols=113 Identities=21% Similarity=0.255 Sum_probs=67.1
Q ss_pred CHHHhHhhHhcCCcEEEEccCCC-HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKD-AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELP 355 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~s-aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg 355 (506)
..+.+...++.++++|..+|=.- .+.++.+++ ..+.++.++-|.+... ..++. +|+|++-=.+=|-+.+
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~------~gi~v~~~v~s~~~A~---~a~~~G~D~iv~qG~eAGGH~g 172 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHA------AGIKVIPQVTSVREAR---KAAKAGADAIVAQGPEAGGHRG 172 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHH------TT-EEEEEESSHHHHH---HHHHTT-SEEEEE-TTSSEE--
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHH------cCCccccccCCHHHHH---HhhhcCCCEEEEeccccCCCCC
Confidence 45667888899999999998776 444444443 3578999887766553 33443 8998876445555555
Q ss_pred C-C-cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 356 I-E-EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 356 ~-e-~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
. . .......++.+. ..+|||.|.-+-+ -.+++.++..|+|++.+
T Consensus 173 ~~~~~~~~L~~~v~~~---~~iPViaAGGI~d------------g~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 173 FEVGSTFSLLPQVRDA---VDIPVIAAGGIAD------------GRGIAAALALGADGVQM 218 (330)
T ss_dssp -SSG-HHHHHHHHHHH----SS-EEEESS--S------------HHHHHHHHHCT-SEEEE
T ss_pred ccccceeeHHHHHhhh---cCCcEEEecCcCC------------HHHHHHHHHcCCCEeec
Confidence 1 1 244444455443 3499999976542 34688999999999986
No 148
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=78.65 E-value=31 Score=35.27 Aligned_cols=140 Identities=18% Similarity=0.214 Sum_probs=75.8
Q ss_pred HhhHhcC-CcEEEE------------ccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-----CCEEE
Q 010610 283 KFGVDNK-VDFYAV------------SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAM 344 (506)
Q Consensus 283 ~~al~~g-vD~Ial------------SfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDGIm 344 (506)
+.+.+.| +|+|=+ .+-++++-+.++.+.+++.- +++|++||=- .++++.++++. +|+|.
T Consensus 111 ~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~~~~~~~a~~l~~~G~d~i~ 187 (301)
T PRK07259 111 EKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NVTDIVEIAKAAEEAGADGLS 187 (301)
T ss_pred HHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--CchhHHHHHHHHHHcCCCEEE
Confidence 4455677 999855 22344555566555555432 6889999851 23344444432 68876
Q ss_pred E-----cCC-Ccc-------cCC----CCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHh
Q 010610 345 V-----ARG-DLG-------AEL----PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE 407 (506)
Q Consensus 345 I-----aRG-DLg-------vel----g~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~d 407 (506)
+ ++. |+- ... |....+...+.+-+..+..++|+|....+. + ..|+..++..
T Consensus 188 ~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~---------~---~~da~~~l~a 255 (301)
T PRK07259 188 LINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGIS---------S---AEDAIEFIMA 255 (301)
T ss_pred EEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCC---------C---HHHHHHHHHc
Confidence 5 211 221 011 111122333334344445589988765322 2 3467788899
Q ss_pred CcceeEeeccccCCCCHHHHHHHHHHHHHHHhcccc
Q 010610 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (506)
Q Consensus 408 G~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~ 443 (506)
|+|+|++..---.| | .+..+|.+..+.++.
T Consensus 256 GAd~V~igr~ll~~--P----~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 256 GASAVQVGTANFYD--P----YAFPKIIEGLEAYLD 285 (301)
T ss_pred CCCceeEcHHHhcC--c----HHHHHHHHHHHHHHH
Confidence 99999986332223 3 445555555555443
No 149
>TIGR03586 PseI pseudaminic acid synthase.
Probab=78.54 E-value=25 Score=37.15 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=43.5
Q ss_pred HHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHH-hCcc
Q 010610 333 LHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR-EGAD 410 (506)
Q Consensus 333 ldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~-dG~D 410 (506)
+|.+... +|.+=||-+|+.- -.+++++.+.||||++.|.| .|-.|+...+.++. .|.+
T Consensus 103 vd~l~~~~v~~~KI~S~~~~n-----------~~LL~~va~~gkPvilstG~---------~t~~Ei~~Av~~i~~~g~~ 162 (327)
T TIGR03586 103 VDFLESLDVPAYKIASFEITD-----------LPLIRYVAKTGKPIIMSTGI---------ATLEEIQEAVEACREAGCK 162 (327)
T ss_pred HHHHHHcCCCEEEECCccccC-----------HHHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHCCCC
Confidence 3444444 6899999888732 23466677889999999865 36789888888886 4663
Q ss_pred eeEe
Q 010610 411 AVML 414 (506)
Q Consensus 411 ~vmL 414 (506)
-++|
T Consensus 163 ~i~L 166 (327)
T TIGR03586 163 DLVL 166 (327)
T ss_pred cEEE
Confidence 3444
No 150
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=78.32 E-value=65 Score=32.86 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCcEEEEcc------------CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-----CCEEEEcC---C
Q 010610 289 KVDFYAVSF------------VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVAR---G 348 (506)
Q Consensus 289 gvD~IalSf------------V~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDGImIaR---G 348 (506)
++|+|-+.+ -.+++.+.++-+.+++. .+.+|++||- ..+++..++++. +|+|.+.- |
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~ 194 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRG 194 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCc
Confidence 378776643 24566666666666543 2578999995 133344444432 69998731 1
Q ss_pred ---Ccc-------cCC----CCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 349 ---DLG-------AEL----PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 349 ---DLg-------vel----g~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
|+. ... |....+...+.+-+..+..++|+|....+. + ..|+..++..|+|+||+
T Consensus 195 ~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~---------s---~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 195 MKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGIT---------S---FEDALEFLMAGASAVQV 262 (300)
T ss_pred cccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHcCCCceee
Confidence 211 010 111223334444445555689988765332 2 24678888999999998
Q ss_pred eccccCCCCHHHHHHHHHHHHHHHhccc
Q 010610 415 SGETAHGKFPLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 415 s~ETA~G~yPveaV~~m~~I~~~aE~~~ 442 (506)
..-. . ..| .+..+|.++.++.+
T Consensus 263 gr~~-l-~~p----~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 263 GTAV-Y-YRG----FAFKKIIEGLIAFL 284 (300)
T ss_pred cHHH-h-cCc----hHHHHHHHHHHHHH
Confidence 6332 1 234 34455555555444
No 151
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=78.27 E-value=9.6 Score=38.51 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 010610 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIV 379 (506)
Q Consensus 300 saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPviv 379 (506)
+.++..++.+++++.| +..++-.=+.++++-++++ -.+.+=||-+||. . -.+++.+.+.|||+|+
T Consensus 54 ~~e~~~~L~~~~~~~g--i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~------n-----~~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 54 SEEQHKELFEYCKELG--IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT------N-----LPLLEYIAKTGKPVIL 118 (241)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT------------HHHHHHHHTT-S-EEE
T ss_pred CHHHHHHHHHHHHHcC--CEEEECCCCHHHHHHHHHc--CCCEEEecccccc------C-----HHHHHHHHHhCCcEEE
Confidence 4456666666666543 4445533344444444333 2789999988885 2 2467788889999999
Q ss_pred EehhhhhhhcCCCCChhhcccHHHHH-HhCcceeEeeccccCCCCHH
Q 010610 380 ATNMLESMIVHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL 425 (506)
Q Consensus 380 ATqmLeSMi~~~~PtRAEv~Dvanav-~dG~D~vmLs~ETA~G~yPv 425 (506)
.|.|- |-+|+.+..+.+ ..|.+-+.|-. -+-.||.
T Consensus 119 STG~s---------tl~EI~~Av~~~~~~~~~~l~llH--C~s~YP~ 154 (241)
T PF03102_consen 119 STGMS---------TLEEIERAVEVLREAGNEDLVLLH--CVSSYPT 154 (241)
T ss_dssp E-TT-----------HHHHHHHHHHHHHHCT--EEEEE--E-SSSS-
T ss_pred ECCCC---------CHHHHHHHHHHHHhcCCCCEEEEe--cCCCCCC
Confidence 99765 779999999988 55555444321 2556774
No 152
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.10 E-value=43 Score=35.73 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=42.2
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcC
Q 010610 111 KIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 164 (506)
Q Consensus 111 KIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~ 164 (506)
.+..-..|...-.+.+.+++++|+..+-+..-+.+..+..+..+.+++..++++
T Consensus 148 ~LylIT~~~~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~ 201 (347)
T PRK02615 148 RLYLITSPSENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYG 201 (347)
T ss_pred CEEEEECCchhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 355444553223568999999999999999999999888888888888877765
No 153
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=77.90 E-value=44 Score=30.85 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=53.1
Q ss_pred ChhhcccHHHHHHhCcceeEeeccccCCCC----HHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHH
Q 010610 394 TRAEVSDIAIAVREGADAVMLSGETAHGKF----PLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATM 469 (506)
Q Consensus 394 tRAEv~Dvanav~dG~D~vmLs~ETA~G~y----PveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~ 469 (506)
++.-+..+..+...|+|++++..- .+.. +-+.++..+.|+..++..++.- .|.. +......+.+. ..++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~-iy~~---p~~~~~~~~~~-~~~~ 136 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAADGGLPLK-VILE---TRGLKTADEIA-KAAR 136 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHhcCCceEE-EEEE---CCCCCCHHHHH-HHHH
Confidence 444466677889999999998522 1111 4566788888888762222100 0000 00001223333 3356
Q ss_pred HHhhcCceEEEEcCC-------hHHHHHH-HhhCCCCeEEEEe
Q 010610 470 MSNTLGTSIVVFTRT-------GFMAILL-SHYRPSGTIFAFT 504 (506)
Q Consensus 470 ~A~~~~a~Iiv~T~s-------G~tA~~l-S~~RP~~pIia~T 504 (506)
++.+.|+..|-.+.. -...+.+ ..+.+++||+++.
T Consensus 137 ~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~g 179 (201)
T cd00945 137 IAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAG 179 (201)
T ss_pred HHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEEC
Confidence 667778843443322 1222333 3333367888765
No 154
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=77.47 E-value=35 Score=32.43 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=58.9
Q ss_pred HHHhHhhHhcCCcEEEEccCC--CHH---HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCccc
Q 010610 279 WDDIKFGVDNKVDFYAVSFVK--DAQ---VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGA 352 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~--sae---dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgv 352 (506)
.+.++.+++.|+|+|-+-.-. ..+ .++++++.... .++.++.. +.++...+. +||+.+.-.|+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-------~~~~~a~~~gad~vh~~~~~~-- 92 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRR--YGVPLIVN-------DRVDLALAVGADGVHLGQDDL-- 92 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH--hCCeEEEe-------ChHHHHHHcCCCEEecCcccC--
Confidence 456788899999999774322 112 23333333332 23445442 345555555 78887743321
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 353 ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 353 elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
+ ...++..+..++.+++++ +|..| +..+...|+|.+.++
T Consensus 93 --~--------~~~~~~~~~~~~~~g~~~-----------~t~~e---~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 93 --P--------VADARALLGPDAIIGLST-----------HTLEE---AAAALAAGADYVGVG 131 (212)
T ss_pred --C--------HHHHHHHcCCCCEEEEeC-----------CCHHH---HHHHhHcCCCEEEEC
Confidence 1 122344556777778764 34444 667888999999874
No 155
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=77.42 E-value=64 Score=32.65 Aligned_cols=67 Identities=9% Similarity=0.215 Sum_probs=44.1
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecC--C-hhhhhhHHHHHHh-CCEEEEcCCCcc
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIE--S-ADSIPNLHSIITA-SDGAMVARGDLG 351 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIE--t-~~aveNldeIl~~-sDGImIaRGDLg 351 (506)
.+.+.+.|+|||=.+|.. ++..++++++...-.+..+.-|= | .++++++.+.++. ++|+.++|.=+.
T Consensus 166 ~~~a~e~GAD~vKt~~~~---~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 166 ARVAAELGADIVKTNYTG---DPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred HHHHHHHCCCEEeeCCCC---CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 356778999999999875 44555555543222343444344 5 3677778888877 789998876553
No 156
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=77.08 E-value=4.9 Score=42.08 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=39.5
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHH
Q 010610 112 IVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEY 159 (506)
Q Consensus 112 Ii~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~ 159 (506)
+.+.+|+..+..+.++.++++|++++=+|++||..+.+.++++.+|+.
T Consensus 85 v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 85 VGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred EEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 445566655668899999999999999999999998888888888763
No 157
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=76.73 E-value=18 Score=36.65 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=58.1
Q ss_pred HHhHhhHhcCCcEEEEcc------CCCHHHHHHH-HHHHHhcCCCceEEEecCC---hhhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVSF------VKDAQVVHEL-KNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSf------V~saedV~~l-r~~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDGImIaRG 348 (506)
+.+++.++.|+|+|.+.= --|.++-+++ +...+..+.++.|++-+-. .++++......+. +|+||+.+-
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 446788999999998651 1233333333 3344444557889888864 4555555555444 799999865
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
... ..+-+.+...-+.|.+ +.+.|+++.
T Consensus 105 ~~~-~~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 105 YYN-KPSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred ccC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 442 1122344444455544 468998875
No 158
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.53 E-value=13 Score=36.70 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=65.2
Q ss_pred EccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCC--------cccCCCCC--cHHHHHH
Q 010610 295 VSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGD--------LGAELPIE--EVPLLQE 364 (506)
Q Consensus 295 lSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGD--------Lgvelg~e--~V~~~Qk 364 (506)
+=...++++..++-+.+-+.|-+ .+=.-.-|+.+++.|.++.+..+.++||-|= ..++.|.+ --|....
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~-~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~ 87 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLP-AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQ 87 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCC-EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCH
Confidence 33345566666666655554433 2222335666777776666555566666541 11222211 1234557
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~ 420 (506)
.+++.|+++|+|++=- -.-.+++..|...|+|.+=+=--...
T Consensus 88 ~vi~~a~~~~i~~iPG--------------~~TptEi~~A~~~Ga~~vK~FPa~~~ 129 (201)
T PRK06015 88 ELLAAANDSDVPLLPG--------------AATPSEVMALREEGYTVLKFFPAEQA 129 (201)
T ss_pred HHHHHHHHcCCCEeCC--------------CCCHHHHHHHHHCCCCEEEECCchhh
Confidence 8999999999998832 11234588999999999988533333
No 159
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=76.42 E-value=13 Score=37.22 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=71.8
Q ss_pred HHhHhhHhcCCcEEEE---------------ccCCCHHHHHHHHHHHHhcCC--CceEEEecCCh--------hhhhhHH
Q 010610 280 DDIKFGVDNKVDFYAV---------------SFVKDAQVVHELKNYLKSCGA--DIHVIVKIESA--------DSIPNLH 334 (506)
Q Consensus 280 ~dI~~al~~gvD~Ial---------------SfV~saedV~~lr~~l~~~~~--~i~IIaKIEt~--------~aveNld 334 (506)
+.++...+.|+++|.+ ..+...+.+..++......+. +..|+|..|.. ++++...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 3355667799999999 556666667777776665554 89999996653 4555555
Q ss_pred HHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCC-CChhhcccHHHHHHhCccee
Q 010610 335 SIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPT-PTRAEVSDIAIAVREGADAV 412 (506)
Q Consensus 335 eIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~-PtRAEv~Dvanav~dG~D~v 412 (506)
.-.++ +|++|+-.- . -.+++-+.+++...|+.+- +..++. ++ ....-..|+..+
T Consensus 168 ay~~AGAD~v~v~~~--------~----~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~------~~~l~~lG~~~v 223 (243)
T cd00377 168 AYAEAGADGIFVEGL--------K----DPEEIRAFAEAPDVPLNVN------MTPGGNLLT------VAELAELGVRRV 223 (243)
T ss_pred HHHHcCCCEEEeCCC--------C----CHHHHHHHHhcCCCCEEEE------ecCCCCCCC------HHHHHHCCCeEE
Confidence 55556 899998421 1 2256666677788998864 111121 23 334555688877
Q ss_pred Ee
Q 010610 413 ML 414 (506)
Q Consensus 413 mL 414 (506)
.+
T Consensus 224 ~~ 225 (243)
T cd00377 224 SY 225 (243)
T ss_pred EE
Confidence 66
No 160
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=76.35 E-value=77 Score=33.65 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=89.6
Q ss_pred CCccCHHHhH-hhHhcCCcEEEEccCCCH-HHHHHHHHHHHhcCCCceEEEec-CChhhhhhHHHHHHh-CCEEEE--cC
Q 010610 274 ITEKDWDDIK-FGVDNKVDFYAVSFVKDA-QVVHELKNYLKSCGADIHVIVKI-ESADSIPNLHSIITA-SDGAMV--AR 347 (506)
Q Consensus 274 ltekD~~dI~-~al~~gvD~IalSfV~sa-edV~~lr~~l~~~~~~i~IIaKI-Et~~aveNldeIl~~-sDGImI--aR 347 (506)
+|..++..|. ...+.|+|.|=+.|-... .+.+.++.+. +.+....+.+-. -+.+ .++..++. .|.|.+ +-
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~~~---di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRARDA---DIEAAARCGVDAVHISIPV 95 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCCHH---HHHHHHcCCcCEEEEEEcc
Confidence 4555555554 455789999977655433 3444454443 334445555543 2333 33444433 464443 32
Q ss_pred CCcccC----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeeccccCCC
Q 010610 348 GDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGK 422 (506)
Q Consensus 348 GDLgve----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ETA~G~ 422 (506)
.|+-.+ ...++.....++.++.++++|..|-+.. ...++-+...+.+++. +...|+|.+-|. +|.=.-
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G~~ 168 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAAEAGADRFRFA-DTVGIL 168 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCCCC
Confidence 331111 1123445555788899999998876642 1223333444555554 455699999885 888899
Q ss_pred CHHHHHHHHHHHHHHH
Q 010610 423 FPLKAVKVMHTVSLRT 438 (506)
Q Consensus 423 yPveaV~~m~~I~~~a 438 (506)
.|.+.-+.+..+....
T Consensus 169 ~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 169 DPFSTYELVRALRQAV 184 (365)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999888887654
No 161
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=76.30 E-value=11 Score=38.69 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=47.0
Q ss_pred cCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEcC
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIaR 347 (506)
.+.+++..+++.|+|+|.+.-+ ++++++++.+.++....+++++| --|+ +|+.++++. +|+|.++.
T Consensus 191 ~t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 191 DSLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAA----AGGINIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEE----ECCCCHHHHHHHHHcCCcEEEECh
Confidence 3457777888999999999765 45677777776654434555444 2334 788899888 89997763
No 162
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=76.26 E-value=30 Score=36.82 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=94.4
Q ss_pred CCCccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEE-ccCCCHH------HHHHHHHHHHhc-CCCceEEEecCChhh
Q 010610 258 SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAV-SFVKDAQ------VVHELKNYLKSC-GADIHVIVKIESADS 329 (506)
Q Consensus 258 s~KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~Ial-SfV~sae------dV~~lr~~l~~~-~~~i~IIaKIEt~~a 329 (506)
-|-|..-|+..++ ++.-.+.++...+.|++.|=+ ||| ++. |-.++.+.+... +..+..++ =+.++
T Consensus 54 lRDG~Q~~g~~~s----~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l~--~n~~d 126 (347)
T PLN02746 54 PRDGLQNEKNIVP----TSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVLT--PNLKG 126 (347)
T ss_pred CCccCcCCCCCCC----HHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEEc--CCHHH
Confidence 3445555665432 333344445556799999955 566 432 333333334332 22333333 24444
Q ss_pred hhhHHHHHHh-CCEEEEc--CCCccc----CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhc---c
Q 010610 330 IPNLHSIITA-SDGAMVA--RGDLGA----ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEV---S 399 (506)
Q Consensus 330 veNldeIl~~-sDGImIa--RGDLgv----elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv---~ 399 (506)
++. .++. .|.|.+. -.|+=. ....++.....+++++.|+++|..|...- .....+|.-+|++. .
T Consensus 127 ie~---A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i---s~~fg~p~~~r~~~~~l~ 200 (347)
T PLN02746 127 FEA---AIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV---SCVVGCPIEGPVPPSKVA 200 (347)
T ss_pred HHH---HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE---EeeecCCccCCCCHHHHH
Confidence 443 3333 5654432 222211 12345677777899999999999885211 00122455555543 3
Q ss_pred cHHH-HHHhCcceeEeeccccCCCCHHHHHHHHHHHHHH
Q 010610 400 DIAI-AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (506)
Q Consensus 400 Dvan-av~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~ 437 (506)
+++. +...|+|.|.|. +|.=--.|.+..+++..+..+
T Consensus 201 ~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 201 YVAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHh
Confidence 3333 778899999995 888888899999998888654
No 163
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=76.21 E-value=24 Score=36.56 Aligned_cols=126 Identities=19% Similarity=0.302 Sum_probs=84.3
Q ss_pred HHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh-
Q 010610 307 LKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML- 384 (506)
Q Consensus 307 lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL- 384 (506)
++.+.++.+..++|...+.+. .++.+.+.++. .+-||+--- ++|+++....-+++.+.|+.+|.++=..-.-+
T Consensus 67 ~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~ 141 (293)
T PRK07315 67 IENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIG 141 (293)
T ss_pred HHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCccc
Confidence 334444444467899999987 66666666655 789999744 45788888999999999999999984332222
Q ss_pred --hhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHH----HHHHHHHHHHHHH
Q 010610 385 --ESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL----KAVKVMHTVSLRT 438 (506)
Q Consensus 385 --eSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPv----eaV~~m~~I~~~a 438 (506)
|-++..... .....++..|+..|+|++-++-=|..|.||- --.+.+.+|.+..
T Consensus 142 g~ed~~~g~s~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~ 200 (293)
T PRK07315 142 GEEDGIIGKGE-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV 200 (293)
T ss_pred CcCccccCccC-CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc
Confidence 112111111 1223446678899999999998899999974 3355566665554
No 164
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=76.21 E-value=81 Score=30.85 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=75.5
Q ss_pred cCHHHhHhhHhcCCcEEEE-ccCCCHH------HHHHHHHHHHhcCCCceEEEec----------CChhhhhhHHHHHHh
Q 010610 277 KDWDDIKFGVDNKVDFYAV-SFVKDAQ------VVHELKNYLKSCGADIHVIVKI----------ESADSIPNLHSIITA 339 (506)
Q Consensus 277 kD~~dI~~al~~gvD~Ial-SfV~sae------dV~~lr~~l~~~~~~i~IIaKI----------Et~~aveNldeIl~~ 339 (506)
.....++.+++.|+|.|.+ -+..... ++.++++...+.+ +++|.-. -+.+-++..-.+...
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g--~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~ 154 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYG--LPLIAWMYPRGPAVKNEKDPDLIAYAARIGAE 154 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC--CCEEEEEeccCCcccCccCHHHHHHHHHHHHH
Confidence 3455678899999998733 2222222 4555555554433 4444421 112222221111211
Q ss_pred --CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhh-cccHHHHHHhCcceeEeec
Q 010610 340 --SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE-VSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 340 --sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAE-v~Dvanav~dG~D~vmLs~ 416 (506)
+|.|-+.. + ..+ ...+++ ++...+|++++.-+ ...|..+ ...+..+...|++++....
T Consensus 155 ~GaD~Ik~~~-------~-~~~-~~~~~i---~~~~~~pvv~~GG~-------~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 155 LGADIVKTKY-------T-GDA-ESFKEV---VEGCPVPVVIAGGP-------KKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred HCCCEEEecC-------C-CCH-HHHHHH---HhcCCCCEEEeCCC-------CCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 68888841 1 111 222333 34556898654310 1122222 3447788999999999877
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 010610 417 ETAHGKFPLKAVKVMHTVS 435 (506)
Q Consensus 417 ETA~G~yPveaV~~m~~I~ 435 (506)
-.-..+.|.++++.+++++
T Consensus 216 ~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 216 NIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred hhhcCCCHHHHHHHHHHHh
Confidence 7777778999999888764
No 165
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=75.79 E-value=35 Score=35.07 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=62.8
Q ss_pred HHhHhhHhcCCcEEEEccCCC-------HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEc-CCCc
Q 010610 280 DDIKFGVDNKVDFYAVSFVKD-------AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVA-RGDL 350 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~s-------aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIa-RGDL 350 (506)
+.++.+.+.|+|.|.+.+=.. .+.++++++.+ ..++++|.= ...+......+. +|+|.+. +|
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g-- 203 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG-- 203 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC--
Confidence 345666778999887754111 25666665543 367888831 223333334444 7998884 22
Q ss_pred ccCC--CCCcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec
Q 010610 351 GAEL--PIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 351 gvel--g~e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ 416 (506)
|..+ +... . ..+.+.++.. ..|+|....+- + -.|++.++..|+|+||+..
T Consensus 204 G~~~~~g~~~-~---~~l~~i~~~~~~~ipvia~GGI~---------~---~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 204 GRQLDGAPAT-I---DALPEIVAAVGGRIEVLLDGGIR---------R---GTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCCCCcCH-H---HHHHHHHHHhcCCCeEEEeCCCC---------C---HHHHHHHHHcCCCEEEEcH
Confidence 2222 2111 1 1122222223 48988765332 2 3579999999999999853
No 166
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=75.65 E-value=37 Score=32.44 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=65.7
Q ss_pred CCccCHHHhHhhHhcCCcEEEEc--cCCCHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHh-CCEEEEcCC
Q 010610 274 ITEKDWDDIKFGVDNKVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 274 ltekD~~dI~~al~~gvD~IalS--fV~saedV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDGImIaRG 348 (506)
.+.++...+-.+++.|+|+|=+. + .++.-...++++-+... +..+++ |+-++... .+++..+. +|.|.+--
T Consensus 9 ~~~~~a~~~~~~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~- 84 (206)
T TIGR03128 9 LDIEEALELAEKVADYVDIIEIGTPL-IKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY-EAEQAFAAGADIVTVLG- 84 (206)
T ss_pred CCHHHHHHHHHHcccCeeEEEeCCHH-HHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH-HHHHHHHcCCCEEEEec-
Confidence 34455555656668899998774 3 22222333333322222 223332 44454432 45665555 78776541
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
+.+ ....+++++.|+++|++++.+- ..|.. -..++..+...|+|.+.+.
T Consensus 85 ----~~~----~~~~~~~i~~~~~~g~~~~~~~---------~~~~t-~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 85 ----VAD----DATIKGAVKAAKKHGKEVQVDL---------INVKD-KVKRAKELKELGADYIGVH 133 (206)
T ss_pred ----cCC----HHHHHHHHHHHHHcCCEEEEEe---------cCCCC-hHHHHHHHHHcCCCEEEEc
Confidence 112 1234788999999999999751 01211 1234556666799988774
No 167
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=75.46 E-value=45 Score=33.07 Aligned_cols=131 Identities=12% Similarity=-0.006 Sum_probs=77.1
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhhHHHHHH-hCCEEEEcCCCcccCCCCCc
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIIT-ASDGAMVARGDLGAELPIEE 358 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaK--IEt~~aveNldeIl~-~sDGImIaRGDLgvelg~e~ 358 (506)
++.|++.|+|+|-++ ++-.++.++|+.+. .+ .+|.- .-+.+ ...+-.+ -+|.+.+|+- +.. .....
T Consensus 80 ~dlA~~~~adGVHLg--~~d~~~~~~r~~~~---~~-~iiG~s~~~s~~---~a~~A~~~gaDYv~~Gpv-~t~-tK~~~ 148 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLAALAEAIEKHA---PK-MIVGFGNLRDRH---GAMEIGELRPDYLFFGKL-GAD-NKPEA 148 (221)
T ss_pred HHHHHHhCCCEEEEC--ccccCHHHHHHhcC---CC-CEEEecCCCCHH---HHHHhhhcCCCEEEECCC-CCC-CCCCC
Confidence 556778899999888 22234666776652 22 22221 12222 2222212 2799999986 321 11111
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHH
Q 010610 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (506)
Q Consensus 359 V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~ 436 (506)
-+.-...+-+.|+...+||+--..+- ..++......|+|++-..+.--.-+.|.++++-+.+++.
T Consensus 149 ~p~gl~~l~~~~~~~~iPvvAIGGI~-------------~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 149 HPRNLSLAEWWAEMIEIPCIVQAGSD-------------LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred CCCChHHHHHHHHhCCCCEEEEeCCC-------------HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 11111112235667789988654321 224677888999999988777777889999998887764
No 168
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=75.35 E-value=31 Score=35.31 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=59.0
Q ss_pred HHhHhhHh-cCCcEEEEc------cCCCHHHHHH-HHHHHHhcCCCceEEEecC---ChhhhhhHHHHHHh-CCEEEEcC
Q 010610 280 DDIKFGVD-NKVDFYAVS------FVKDAQVVHE-LKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 280 ~dI~~al~-~gvD~IalS------fV~saedV~~-lr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDGImIaR 347 (506)
+.+++.++ .|+++|++. +.=|.++-.+ ++..++..+.++.||+.+- +.++++.....-+. +|++|+.+
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44578899 999998764 2223333333 3445555667789999984 45566655555554 89999986
Q ss_pred CCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 348 GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 348 GDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
..+-- ... ..+.+..-.-|.+.+.|+++.
T Consensus 108 P~y~~-~~~---~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 108 PFYYP-FSF---EEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred CcCCC-CCH---HHHHHHHHHHHHhCCCCEEEE
Confidence 54311 111 223333444455667898876
No 169
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=75.32 E-value=33 Score=36.27 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 010610 301 AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIV 379 (506)
Q Consensus 301 aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPviv 379 (506)
.++..++.++.++.| +..++ |+-..+.+|.+.+. +|.+=||-+|+.- -.+++.+.+.|||+|+
T Consensus 75 ~e~~~~L~~~~~~~G--i~~~s---tpfd~~svd~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 75 EEDHRELKEYCESKG--IEFLS---TPFDLESADFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVIL 138 (329)
T ss_pred HHHHHHHHHHHHHhC--CcEEE---EeCCHHHHHHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEEE
Confidence 344555555554433 23333 22233333444455 7899999888743 3456778889999999
Q ss_pred EehhhhhhhcCCCCChhhcccHHHHHHh-Ccc
Q 010610 380 ATNMLESMIVHPTPTRAEVSDIAIAVRE-GAD 410 (506)
Q Consensus 380 ATqmLeSMi~~~~PtRAEv~Dvanav~d-G~D 410 (506)
.|.|- |-.|+...+.++.. |.+
T Consensus 139 StGma---------tl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 139 STGMA---------TLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred ECCCC---------CHHHHHHHHHHHHHcCCC
Confidence 99762 67898888888874 554
No 170
>PLN02826 dihydroorotate dehydrogenase
Probab=75.29 E-value=51 Score=35.89 Aligned_cols=139 Identities=18% Similarity=0.239 Sum_probs=74.1
Q ss_pred HhcCCcEEEEcc----------CCCHHHHHHHHHHHHhc--------CCCceEEEecCChhhhhhHHHHHHh-----CCE
Q 010610 286 VDNKVDFYAVSF----------VKDAQVVHELKNYLKSC--------GADIHVIVKIESADSIPNLHSIITA-----SDG 342 (506)
Q Consensus 286 l~~gvD~IalSf----------V~saedV~~lr~~l~~~--------~~~i~IIaKIEt~~aveNldeIl~~-----sDG 342 (506)
+...+|++-+.. -+..+.+.++-+.+.+. +.+++|++||=--..-+.+++|++. +||
T Consensus 213 ~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dG 292 (409)
T PLN02826 213 LSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDG 292 (409)
T ss_pred HhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCE
Confidence 334599987542 23344444443333221 2358999999322222345555543 799
Q ss_pred EEEc-----C-CCcc-----cCCC-C---CcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHH
Q 010610 343 AMVA-----R-GDLG-----AELP-I---EEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAV 405 (506)
Q Consensus 343 ImIa-----R-GDLg-----velg-~---e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav 405 (506)
|.+. | +|+- .+.| + .-.+...+.+-...++. ..|+|-.+-+. ...|++.++
T Consensus 293 Ii~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~------------sg~Da~e~i 360 (409)
T PLN02826 293 LIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVS------------SGEDAYKKI 360 (409)
T ss_pred EEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCC------------CHHHHHHHH
Confidence 9775 3 3331 1111 1 12334444444444444 46777665433 245899999
Q ss_pred HhCcceeEeeccccC-CCCHHHHHHHHHHHHHHHhccc
Q 010610 406 REGADAVMLSGETAH-GKFPLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 406 ~dG~D~vmLs~ETA~-G~yPveaV~~m~~I~~~aE~~~ 442 (506)
..||++|.+-.--.. | | ..+.+|.++.+..+
T Consensus 361 ~AGAs~VQv~Ta~~~~G--p----~~i~~I~~eL~~~l 392 (409)
T PLN02826 361 RAGASLVQLYTAFAYEG--P----ALIPRIKAELAACL 392 (409)
T ss_pred HhCCCeeeecHHHHhcC--H----HHHHHHHHHHHHHH
Confidence 999999998521111 2 3 34556666666544
No 171
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.06 E-value=14 Score=38.23 Aligned_cols=66 Identities=3% Similarity=0.159 Sum_probs=50.3
Q ss_pred cCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhhHHHHHHh-CCEEEEcC
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDGImIaR 347 (506)
.+.+++..+++.|+|+|.+-. -++++++++...+++.+.++.+.| --| .+|+.++++. +|+|-++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~leA----sGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIEA----SGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEEch
Confidence 467888889999999999995 567889888888766555655444 333 4688888877 89999874
No 172
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=74.86 E-value=87 Score=30.57 Aligned_cols=194 Identities=16% Similarity=0.182 Sum_probs=107.1
Q ss_pred CCccCHHHh-HhhHhcCCcEEEEc-cCCCHHHHHHHHHHHHhcCC-CceEEEecCChhhhhh-HHHHHHh-CCEEEEc--
Q 010610 274 ITEKDWDDI-KFGVDNKVDFYAVS-FVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPN-LHSIITA-SDGAMVA-- 346 (506)
Q Consensus 274 ltekD~~dI-~~al~~gvD~IalS-fV~saedV~~lr~~l~~~~~-~i~IIaKIEt~~aveN-ldeIl~~-sDGImIa-- 346 (506)
++..++..| +...+.|+|.|=+. ..-+.++...++.+.+.... .+..+... ..+.++. ++.+... .|.+.+.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCRA-NEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEES-CHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeeee-hHHHHHHHHHhhHhccCCEEEecCc
Confidence 445555555 45567899999888 45667777777766543322 22233321 2222333 2222223 5655543
Q ss_pred CCCcccC----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHH-hCcceeEeeccccCC
Q 010610 347 RGDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHG 421 (506)
Q Consensus 347 RGDLgve----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~-dG~D~vmLs~ETA~G 421 (506)
-.|+-.. ...++......++++.++++|..+.+... ....-+..++.+.+..+. .|+|.+.|. +|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA-DTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee-CccCC
Confidence 3331111 11234566667889999999999976642 223455667777777655 499999995 88888
Q ss_pred CCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCceEEEEcCCh
Q 010610 422 KFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTG 485 (506)
Q Consensus 422 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~Iiv~T~sG 485 (506)
-.|.+.-+.++.+-+..-. .. +.-...++..-++ +.+.+|-+.|+-+|=.|-.|
T Consensus 163 ~~P~~v~~lv~~~~~~~~~-~~-------l~~H~Hnd~Gla~--An~laA~~aGa~~id~t~~G 216 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPD-IP-------LGFHAHNDLGLAV--ANALAALEAGADRIDGTLGG 216 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTT-SE-------EEEEEBBTTS-HH--HHHHHHHHTT-SEEEEBGGG
T ss_pred cCHHHHHHHHHHHHHhccC-Ce-------EEEEecCCccchh--HHHHHHHHcCCCEEEccCcc
Confidence 8998888777777665553 11 1111122333334 44567777888555555554
No 173
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.58 E-value=14 Score=38.04 Aligned_cols=65 Identities=9% Similarity=0.181 Sum_probs=47.0
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhhHHHHHHh-CCEEEEcC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDGImIaR 347 (506)
..+..+.++++|+|+|.+-.. ++++++++.++++....++.+.| --+ .+|+.++++. +|+|-+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieA----sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEA----SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 467788899999999999775 78888888887654344544444 333 3577777777 89999874
No 174
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=73.99 E-value=32 Score=35.67 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcC
Q 010610 122 TREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 164 (506)
Q Consensus 122 ~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~ 164 (506)
+.+.+++.+++|.+..-|..||.+.++..+.-+.+++....++
T Consensus 88 ~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~g 130 (293)
T PRK07315 88 HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKG 130 (293)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999887777777777776665
No 175
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=73.98 E-value=42 Score=35.88 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=58.7
Q ss_pred cCHH-HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh-----------hhHHHHHHh-CCEE
Q 010610 277 KDWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI-----------PNLHSIITA-SDGA 343 (506)
Q Consensus 277 kD~~-dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av-----------eNldeIl~~-sDGI 343 (506)
.|.+ .++.+.+.|+|.|+++ .-.++.+......++.+|.|+-....+ -..++-++. +|+|
T Consensus 91 ~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV 163 (348)
T PRK09250 91 FDPENIVKLAIEAGCNAVAST-------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAV 163 (348)
T ss_pred cCHHHHHHHHHhcCCCEEEeC-------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEE
Confidence 3555 5577888999999998 334444333334567899998875544 235555555 7765
Q ss_pred EEcCCCcccCCCC---CcHHHHHHHHHHHHHHcCCcEEE
Q 010610 344 MVARGDLGAELPI---EEVPLLQEEIIRTCRSMGKAVIV 379 (506)
Q Consensus 344 mIaRGDLgvelg~---e~V~~~Qk~II~~c~~~GkPviv 379 (506)
-+- +-+|- .+...--.++...|++.|.|++.
T Consensus 164 ~~t-----vy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 164 GAT-----IYFGSEESRRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEE-----EecCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 543 11221 13445557899999999999886
No 176
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=73.83 E-value=57 Score=33.05 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.++++.. |....-.-+...-..|++.+...+ +| -++++...+++++-. .++.
T Consensus 79 alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~~-~~~~~~a~~la~~~~-~~~~ 140 (304)
T cd01562 79 GVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----DF-DEAEAKARELAEEEG-LTFI 140 (304)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHhcC-CEEe
Confidence 45678999999999863 222222235567788999777653 34 466666666655422 2211
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHHhh----CCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLSHY----RPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-a-~Iiv~T~sG~tA~~lS~~----RP~~pIia~T~ 505 (506)
. .|.+ . .........+.++..+++ . .||+.+-||.|..-++++ .|...|+++.+
T Consensus 141 ~-~~~n---~---~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~ 200 (304)
T cd01562 141 H-PFDD---P---DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEP 200 (304)
T ss_pred C-CCCC---c---chhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 1 1111 0 111222334567777775 4 888888899887666554 78889998875
No 177
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=73.82 E-value=41 Score=35.12 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=77.3
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHH
Q 010610 294 AVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRS 372 (506)
Q Consensus 294 alSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~ 372 (506)
.+.-..++++|.++++.+ +++||+|+=.-- +...+.+.+. +|.| | ..+..-+ -...+...+.
T Consensus 56 g~~Rm~~p~~I~aIk~~V-----~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~K~ 118 (293)
T PRK04180 56 GVARMADPKMIEEIMDAV-----SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHIDKW 118 (293)
T ss_pred CeeecCCHHHHHHHHHhC-----CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHHHH
Confidence 345567899998888765 678887654322 5555555555 7877 4 2222211 1133333333
Q ss_pred -cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhcc
Q 010610 373 -MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEAT 441 (506)
Q Consensus 373 -~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~ 441 (506)
.+.|++.-. ..+.+.-+++..|+|.|--+||.-.|+ -+|+|+-|+.|..+.-..
T Consensus 119 ~f~~~fmad~--------------~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L 173 (293)
T PRK04180 119 DFTVPFVCGA--------------RNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRL 173 (293)
T ss_pred HcCCCEEccC--------------CCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHH
Confidence 477766432 234457789999999999999999998 589999999999887754
No 178
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=73.53 E-value=1.3e+02 Score=33.95 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=103.1
Q ss_pred CCccccCCCccCCCCCCccCHHHhH-hhHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCceEEEec-CChhhh--h--
Q 010610 259 RRHLNVRGKSATLPSITEKDWDDIK-FGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKI-ESADSI--P-- 331 (506)
Q Consensus 259 ~KgVnlp~~~~~lp~ltekD~~dI~-~al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i~IIaKI-Et~~av--e-- 331 (506)
|-|-.-|+.. +|..++..|. ...+.|+|.|=+.| .-++.|...++.+.+..-.+..|.+-. -..+.+ +
T Consensus 10 RDG~Q~~g~~-----~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d 84 (526)
T TIGR00977 10 RDGAQREGVS-----FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEED 84 (526)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchH
Confidence 3344445543 3455655554 44578999997764 456888988888765322345555544 112222 2
Q ss_pred -hHHHHHHh-CCEEEE--cCCCcccC----CCCCcHHHHHHHHHHHHHHcCCcEEE-EehhhhhhhcCCCCChhhcccHH
Q 010610 332 -NLHSIITA-SDGAMV--ARGDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVIV-ATNMLESMIVHPTPTRAEVSDIA 402 (506)
Q Consensus 332 -NldeIl~~-sDGImI--aRGDLgve----lg~e~V~~~Qk~II~~c~~~GkPviv-ATqmLeSMi~~~~PtRAEv~Dva 402 (506)
.++..+.. .+.|.+ .--|+-.+ ...+++.......++.++.+|..|.+ ++...+.. +-+...+.+++
T Consensus 85 ~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~ 160 (526)
T TIGR00977 85 KMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATL 160 (526)
T ss_pred HHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHH
Confidence 24444443 444333 32333222 22356777778889999999998854 44332221 11223355555
Q ss_pred HH-HHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHh
Q 010610 403 IA-VREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 403 na-v~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE 439 (506)
.+ ...|+|.+.|. +|.=+..|.+.-+.+..+.+...
T Consensus 161 ~~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 161 ATAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 54 55699999997 99999999999999888876543
No 179
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=73.20 E-value=98 Score=32.68 Aligned_cols=134 Identities=20% Similarity=0.205 Sum_probs=77.7
Q ss_pred CHHHhHhhHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-----CCEEEEcCCCcc
Q 010610 278 DWDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVARGDLG 351 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDGImIaRGDLg 351 (506)
+.+|++.+.++|+|+|-+.+ ...++.+.+.-++.++.|.++.+...--+....+.+.++++. +|.|-++ |
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~--D-- 165 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV--D-- 165 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC--C--
Confidence 35789999999999987764 444455555556667777654433222222233333333332 5666664 2
Q ss_pred cCCCCCcHHHHHHHHHHHHHHc---CCcEEEEehhhhhhhcCCCCChhhcccHHH---HHHhCcceeEee----ccccCC
Q 010610 352 AELPIEEVPLLQEEIIRTCRSM---GKAVIVATNMLESMIVHPTPTRAEVSDIAI---AVREGADAVMLS----GETAHG 421 (506)
Q Consensus 352 velg~e~V~~~Qk~II~~c~~~---GkPvivATqmLeSMi~~~~PtRAEv~Dvan---av~dG~D~vmLs----~ETA~G 421 (506)
..|. -.|.--.+++++.++. ..|+.+.++ ....-| ++| |+..|+|.+=-| || ..|
T Consensus 166 -T~G~-~~P~~v~~~v~~l~~~l~~~i~ig~H~H--------nnlGla----~ANslaAi~aGa~~iD~Sl~GlG~-~aG 230 (337)
T PRK08195 166 -SAGA-LLPEDVRDRVRALRAALKPDTQVGFHGH--------NNLGLG----VANSLAAVEAGATRIDGSLAGLGA-GAG 230 (337)
T ss_pred -CCCC-CCHHHHHHHHHHHHHhcCCCCeEEEEeC--------CCcchH----HHHHHHHHHhCCCEEEecChhhcc-ccc
Confidence 2222 4555556666666654 588998874 222222 444 677887754321 44 678
Q ss_pred CCHHHHHHH
Q 010610 422 KFPLKAVKV 430 (506)
Q Consensus 422 ~yPveaV~~ 430 (506)
+=|.|.+-.
T Consensus 231 N~~tE~lv~ 239 (337)
T PRK08195 231 NTPLEVLVA 239 (337)
T ss_pred CccHHHHHH
Confidence 999987643
No 180
>PRK07334 threonine dehydratase; Provisional
Probab=73.19 E-value=63 Score=34.68 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+++.. |..+.-..+...-..|++.++.. ...-++++...+++++.. .++.
T Consensus 85 alA~~a~~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~~-~~~~ 146 (403)
T PRK07334 85 GVAYHAQRLGIPATIVM-----------PRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEEG-LTFV 146 (403)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcC-CEec
Confidence 45568999999999863 22222234566778899998652 245577777777655422 2211
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHh----hCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSH----YRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA~~lS~----~RP~~pIia~T~ 505 (506)
. .|.+ ....+.....+.++.++++. .||+..-+|.|+--+++ ++|...|+++-+
T Consensus 147 ~-~~~~------~~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~ 206 (403)
T PRK07334 147 H-PYDD------PAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQT 206 (403)
T ss_pred C-CCCC------HHHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 1 1111 11223334456677777764 88888888887655544 589999999865
No 181
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=73.06 E-value=13 Score=37.84 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=54.5
Q ss_pred CccCHHHh-Hhh-HhcCCcEEEEccCCC-----HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcC
Q 010610 275 TEKDWDDI-KFG-VDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVAR 347 (506)
Q Consensus 275 tekD~~dI-~~a-l~~gvD~IalSfV~s-----aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaR 347 (506)
.+.+.++. +.+ -..++|+|++|=-.+ .+++.++|+.+ + ++|+ +=+---.+|+.++++.+||++||-
T Consensus 156 ~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~---~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS 228 (254)
T PF03437_consen 156 ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAV---P--VPVL--VGSGVTPENIAEYLSYADGAIVGS 228 (254)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcC---C--CCEE--EecCCCHHHHHHHHHhCCEEEEee
Confidence 34444444 334 356899999998774 45555555544 2 5555 445556789999999999999994
Q ss_pred -----CCcccCCCCCcHHHHHH
Q 010610 348 -----GDLGAELPIEEVPLLQE 364 (506)
Q Consensus 348 -----GDLgvelg~e~V~~~Qk 364 (506)
|+..-.+..+++....+
T Consensus 229 ~~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 229 YFKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred eeeeCCEeCCcCCHHHHHHHHH
Confidence 56666666666654443
No 182
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=72.51 E-value=1.1e+02 Score=31.92 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=85.9
Q ss_pred HHhHhhHhcCCcEEEE-----c---------cCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEE
Q 010610 280 DDIKFGVDNKVDFYAV-----S---------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAM 344 (506)
Q Consensus 280 ~dI~~al~~gvD~Ial-----S---------fV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGIm 344 (506)
+.-+.|-+.|+-.|++ + -.++++||+++++.+ +++||+++-.-- +...+++.+. +|.|
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI- 91 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI- 91 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE-
Confidence 3444556677777766 3 234667777776654 688888765433 6677777766 7877
Q ss_pred EcCCCcccCCCCCcHHHHHHHHHHHHHH-cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCC
Q 010610 345 VARGDLGAELPIEEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 423 (506)
Q Consensus 345 IaRGDLgvelg~e~V~~~Qk~II~~c~~-~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~y 423 (506)
| +.+-+-+ -..++...+. ++.|++.- . +.+.+.-+++..|+|.|=-+.|-..| +
T Consensus 92 ----D-aT~r~rP-----~~~~~~~iK~~~~~l~MAD-----------~---stleEal~a~~~Gad~I~TTl~gyT~-~ 146 (283)
T cd04727 92 ----D-ESEVLTP-----ADEEHHIDKHKFKVPFVCG-----------A---RNLGEALRRISEGAAMIRTKGEAGTG-N 146 (283)
T ss_pred ----e-ccCCCCc-----HHHHHHHHHHHcCCcEEcc-----------C---CCHHHHHHHHHCCCCEEEecCCCCCC-c
Confidence 4 3332222 2444444444 37776632 2 23445778999999999988887777 6
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 010610 424 PLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 424 PveaV~~m~~I~~~aE~~~ 442 (506)
-.|+|+-+++|-.++....
T Consensus 147 ~~~~~~~~~~i~~~i~~~~ 165 (283)
T cd04727 147 VVEAVRHMRAVNGEIRKLQ 165 (283)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7899999999998887543
No 183
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=72.45 E-value=86 Score=31.79 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=77.9
Q ss_pred HHhHhhHhcCCcEEEEccCC-CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIE 357 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~-saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e 357 (506)
..+..+.++|+|+|.+---- +.+++.++.++..+.| ..+++-+-|.+-++. ..+. +|.|.+..-||... ..
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~~~---A~~~gadiIgin~rdl~~~-~~- 196 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEELER---ALKLGAPLIGINNRNLKTF-EV- 196 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHH---HHHcCCCEEEECCCCcccc-cC-
Confidence 35788899999998775333 5678888888777654 345554445543322 2222 78888887677533 21
Q ss_pred cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHH
Q 010610 358 EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (506)
Q Consensus 358 ~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m 431 (506)
+ ...-.+++.... ...|+|.-. ..=|. .|+..+...|+|+++....-..-+.|.++++-+
T Consensus 197 d-~~~~~~l~~~~p-~~~~vIaeg---------GI~t~---ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 197 D-LETTERLAPLIP-SDRLVVSES---------GIFTP---EDLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred C-HHHHHHHHHhCC-CCCEEEEEe---------CCCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 2 222233333221 123555432 22232 357778888999998865555667788887754
No 184
>PLN02417 dihydrodipicolinate synthase
Probab=72.32 E-value=24 Score=35.98 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=57.4
Q ss_pred HHhHhhHhcCCcEEEEc-------cCCCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-------fV~saedV~~lr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDGImIaRG 348 (506)
+.++|.+++|+|+|++. .....|..+-++..++..+.+++||+-+= +.++++....--+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34578899999999773 22233333333444555566788998875 45666665555544 899999877
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
.+.- .+.+.+...-+.|.++ . |+++.
T Consensus 106 ~y~~-~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 106 YYGK-TSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred ccCC-CCHHHHHHHHHHHHhh----C-CEEEE
Confidence 6532 2223444444444442 3 88754
No 185
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=72.04 E-value=45 Score=36.78 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=70.2
Q ss_pred CHHHhHhhHhcCCcEEEEccC-C-CHHHHHHHHHH-H--HhcC---CCceEEEecCChhhhhh---------HHHHHHh-
Q 010610 278 DWDDIKFGVDNKVDFYAVSFV-K-DAQVVHELKNY-L--KSCG---ADIHVIVKIESADSIPN---------LHSIITA- 339 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV-~-saedV~~lr~~-l--~~~~---~~i~IIaKIEt~~aveN---------ldeIl~~- 339 (506)
+.+.++..+++++..|..|.- . ++..+ ..+.. + ...+ ....||+|+-+++-... ++.+.+.
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 455677788999999887732 2 22222 22210 0 0000 12479999887765543 1222221
Q ss_pred ---------------CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc--------CCcEEEEehhhhhhhcCCCCChh
Q 010610 340 ---------------SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM--------GKAVIVATNMLESMIVHPTPTRA 396 (506)
Q Consensus 340 ---------------sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~--------GkPvivATqmLeSMi~~~~PtRA 396 (506)
+|.|.+. .|=|-+.+-.........|++...+. .+|||.|.-+. |.
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~---------t~- 236 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG---------TP- 236 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC---------CH-
Confidence 5888877 77776665333333333444332222 46799887544 22
Q ss_pred hcccHHHHHHhCcceeEe
Q 010610 397 EVSDIAIAVREGADAVML 414 (506)
Q Consensus 397 Ev~Dvanav~dG~D~vmL 414 (506)
.+++-+...|+|+|.+
T Consensus 237 --~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 237 --EAAAAAFMLGADFIVT 252 (444)
T ss_pred --HHHHHHHHcCCcEEEe
Confidence 3588899999999985
No 186
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=72.04 E-value=36 Score=34.25 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=56.6
Q ss_pred HHhHhhHhcCCcEEEEc------cCCCHHHHHHH-HHHHHhcCCCceEEEecCCh---hhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHEL-KNYLKSCGADIHVIVKIESA---DSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS------fV~saedV~~l-r~~l~~~~~~i~IIaKIEt~---~aveNldeIl~~-sDGImIaRG 348 (506)
+.++|.++.|+|+|.+. +--+.++=.++ +...+..+.++.||+.+=.. ++++.....-+. +|++|+.+-
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 44578899999998754 22233443333 44445556678899987543 344433333333 799999865
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
.+.. .+-+.+...-+.|.+ +.+.|+++.
T Consensus 102 ~y~~-~~~~~~~~~~~~ia~---~~~~pi~iY 129 (281)
T cd00408 102 YYNK-PSQEGIVAHFKAVAD---ASDLPVILY 129 (281)
T ss_pred cCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 5433 222344444444444 468898864
No 187
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=71.97 E-value=45 Score=32.07 Aligned_cols=119 Identities=14% Similarity=0.182 Sum_probs=63.2
Q ss_pred cCHHHhHhhHhcCCcEEEEccCC-CHHHH--HHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh--CCEEEEcCCCcc
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFVK-DAQVV--HELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLG 351 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV~-saedV--~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDGImIaRGDLg 351 (506)
++.+|++.+++.|+|+|.+=|.. |+..+ ..++++.......+.-+.=+-+. -++.+.+++.. .|+|-++-.|
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg~e-- 83 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHGDE-- 83 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECCCC--
Confidence 36789999999999999998864 44444 22233332223222222223233 24555566654 5899887433
Q ss_pred cCCCCCcHHHHHHHHHHHHHH-cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecccc
Q 010610 352 AELPIEEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (506)
Q Consensus 352 velg~e~V~~~Qk~II~~c~~-~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA 419 (506)
+.+. ++..++ .|.+++.+-.+ .+..+ .+...+...|+|.+++-..|.
T Consensus 84 ---~~~~--------~~~l~~~~~~~~i~~i~~---------~~~~~-~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 84 ---SPEY--------CAQLRARLGLPVIKAIRV---------KDEED-LEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred ---CHHH--------HHHHHhhcCCcEEEEEec---------CChhh-HHHhhhccccCCEEEEcCCCC
Confidence 1111 222222 37777743211 11111 122456678999999855544
No 188
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=71.90 E-value=99 Score=29.89 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=81.5
Q ss_pred CccCHHHhH-hhHhcCCcEEEEc-----cCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhh---HHHHHHh-CCEEE
Q 010610 275 TEKDWDDIK-FGVDNKVDFYAVS-----FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPN---LHSIITA-SDGAM 344 (506)
Q Consensus 275 tekD~~dI~-~al~~gvD~IalS-----fV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveN---ldeIl~~-sDGIm 344 (506)
+..|..++. ...+.|++++.+. |-.+.++++.+++.. +++|+.| ..+.+ +++..+. +|++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 445666654 4567899999763 446778888888764 5677765 23332 4444444 89998
Q ss_pred EcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCH
Q 010610 345 VARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (506)
Q Consensus 345 IaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yP 424 (506)
++--||. . ..-+++++.++..|.-+++.+. +-. ++..+...|+|.+.+++.+ ...++
T Consensus 100 l~~~~~~----~----~~~~~~~~~~~~~g~~~~v~v~-----------~~~---e~~~~~~~g~~~i~~t~~~-~~~~~ 156 (217)
T cd00331 100 LIVAALD----D----EQLKELYELARELGMEVLVEVH-----------DEE---ELERALALGAKIIGINNRD-LKTFE 156 (217)
T ss_pred EeeccCC----H----HHHHHHHHHHHHcCCeEEEEEC-----------CHH---HHHHHHHcCCCEEEEeCCC-ccccC
Confidence 8644432 1 4557788888999999877652 222 3667788899999988543 12233
Q ss_pred HHHHHHHHHHHHH
Q 010610 425 LKAVKVMHTVSLR 437 (506)
Q Consensus 425 veaV~~m~~I~~~ 437 (506)
... ..+.+++..
T Consensus 157 ~~~-~~~~~l~~~ 168 (217)
T cd00331 157 VDL-NTTERLAPL 168 (217)
T ss_pred cCH-HHHHHHHHh
Confidence 222 444555443
No 189
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=71.73 E-value=27 Score=31.24 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
-+..+++.+.+.+....+.+--+.. .-++++++++-+|.|+.+-.+ ......+-+.|+++++|+|.+.
T Consensus 57 Ka~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 57 KAEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 5667788888888887776644443 457889999889988876333 4566778889999999999764
No 190
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=71.57 E-value=74 Score=33.79 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCCCcccCCCC-CcHHHHHHHHHHHHHHc
Q 010610 299 KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELPI-EEVPLLQEEIIRTCRSM 373 (506)
Q Consensus 299 ~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRGDLgvelg~-e~V~~~Qk~II~~c~~~ 373 (506)
.+.+++.++++.. +.+||.| ++.+.++...+ +|+|.|. +--|..+.. ..-..+...+....++.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 5567777777644 5688888 33445544443 7998886 222444321 12233344454444343
Q ss_pred --CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 374 --GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 374 --GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
..|+|....+- --.|++.++..|+|++.+.
T Consensus 269 ~~~~~vi~~GGIr------------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 269 FDKIEVYVDGGVR------------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCceEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 37888765332 2468999999999999874
No 191
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=71.24 E-value=32 Score=36.26 Aligned_cols=120 Identities=22% Similarity=0.240 Sum_probs=67.1
Q ss_pred hcCCcEEEEccC----------CCHHHHHHHHHHHHhcCC----CceEEEecCChhhhhhHHHHHHh-----CCEEEEcC
Q 010610 287 DNKVDFYAVSFV----------KDAQVVHELKNYLKSCGA----DIHVIVKIESADSIPNLHSIITA-----SDGAMVAR 347 (506)
Q Consensus 287 ~~gvD~IalSfV----------~saedV~~lr~~l~~~~~----~i~IIaKIEt~~aveNldeIl~~-----sDGImIaR 347 (506)
..++|++-+.|- ++.+.+.++-+.+++.-. +++|++||----..+++.++++. +|||.+-=
T Consensus 167 ~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 167 YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 346999877652 244455555444433212 48999999843223345555543 68887753
Q ss_pred CC-----ccc-----CC-CC---CcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcce
Q 010610 348 GD-----LGA-----EL-PI---EEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA 411 (506)
Q Consensus 348 GD-----Lgv-----el-g~---e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~ 411 (506)
+- +.. .. ++ ..-+...+.+-...++. +.|+|-...+. | ..|+..++..|+|+
T Consensus 247 t~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~---------s---~eda~e~l~aGAd~ 314 (344)
T PRK05286 247 TTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID---------S---AEDAYEKIRAGASL 314 (344)
T ss_pred CccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC---------C---HHHHHHHHHcCCCH
Confidence 21 100 00 11 12233444444444555 57888665433 2 35788899999999
Q ss_pred eEeeccc
Q 010610 412 VMLSGET 418 (506)
Q Consensus 412 vmLs~ET 418 (506)
|++..-.
T Consensus 315 V~v~~~~ 321 (344)
T PRK05286 315 VQIYSGL 321 (344)
T ss_pred HHHHHHH
Confidence 9997443
No 192
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=71.10 E-value=11 Score=36.14 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=48.2
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEc
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIa 346 (506)
.+.++.+++.|+|+|.+=.. ++++++++.+.++..+.+ ++||--.|+ +|+.++.+. +|+|-+|
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~----v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPR----VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTT----SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCc----EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 46677889999999999876 779999999988877777 455555554 688888887 6999886
No 193
>PLN02321 2-isopropylmalate synthase
Probab=71.02 E-value=1.4e+02 Score=34.51 Aligned_cols=155 Identities=17% Similarity=0.266 Sum_probs=94.3
Q ss_pred CCccCHHHh-HhhHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCc---eEEEecC-----ChhhhhhHHHHHHhCC--
Q 010610 274 ITEKDWDDI-KFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADI---HVIVKIE-----SADSIPNLHSIITASD-- 341 (506)
Q Consensus 274 ltekD~~dI-~~al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i---~IIaKIE-----t~~aveNldeIl~~sD-- 341 (506)
+|..++..| +...+.|+|.|=+.| .-++.|.+.++.+.+.....+ ..+++|= +.+.++..-+=+.-++
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 455555555 455678999998877 678888888777654422111 1122221 3333332222111111
Q ss_pred --EEEEcCCCccc----CCCCCcHHHHHHHHHHHHHHcCCc-EEEEehhhhhhhcCCCCChhh---cccHHH-HHHhCcc
Q 010610 342 --GAMVARGDLGA----ELPIEEVPLLQEEIIRTCRSMGKA-VIVATNMLESMIVHPTPTRAE---VSDIAI-AVREGAD 410 (506)
Q Consensus 342 --GImIaRGDLgv----elg~e~V~~~Qk~II~~c~~~GkP-vivATqmLeSMi~~~~PtRAE---v~Dvan-av~dG~D 410 (506)
.++++-.|+-+ -+..+++...-+.+++.|+.+|.. |.+.. +.-+|++ +.+++. ++..|+|
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~---------EDa~rtd~d~l~~~~~~a~~aGa~ 255 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSP---------EDAGRSDPEFLYRILGEVIKAGAT 255 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEec---------ccCCCCCHHHHHHHHHHHHHcCCC
Confidence 35555455422 233457788888999999999985 54432 1234444 444444 5567999
Q ss_pred eeEeeccccCCCCHHHHHHHHHHHHHHH
Q 010610 411 AVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 411 ~vmLs~ETA~G~yPveaV~~m~~I~~~a 438 (506)
.|.|. +|.=.-.|.+.-+++..+.+..
T Consensus 256 ~I~L~-DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 256 TLNIP-DTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred EEEec-ccccCCCHHHHHHHHHHHHHhc
Confidence 99995 9999999999988888887554
No 194
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.93 E-value=1.4e+02 Score=32.46 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCceEEEEeecCCCeeEEeccCCCeEecCCCEEEEEEecCCCCceEEEe--ccchhhhhcCCCCEEE
Q 010610 151 KVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSV--NYDDFVNDVEVGDMLL 228 (506)
Q Consensus 151 ~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~l~~~i~Lk~G~~v~lt~~~~~~~~~~i~v--~~~~l~~~v~~Gd~Il 228 (506)
++...|+..-+..- ..+.|-.++.+-+.+ ..-.++|+..+....-.++.- ++..+--.++.|+.|+
T Consensus 10 el~~~ik~~le~~~-~~v~v~gEis~~~~~-----------~sGH~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~ 77 (438)
T PRK00286 10 ELNRYVKSLLERDL-GQVWVRGEISNFTRH-----------SSGHWYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKVL 77 (438)
T ss_pred HHHHHHHHHHHhhC-CcEEEEEEeCCCeeC-----------CCCeEEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEEE
Confidence 44455555443321 456665555544432 222566776644322222222 2345556689999987
Q ss_pred Ee--------CCeEEEEEEEEeCCeEEEEEeeCcEeC----------CCCccccCCCccCCCCCCccCHHHhHhhHhcCC
Q 010610 229 VD--------GGMMSLLVKSKTEDSVKCEVVDGGELK----------SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKV 290 (506)
Q Consensus 229 iD--------DG~i~l~V~~~~~~~v~~~V~~gG~L~----------s~KgVnlp~~~~~lp~ltekD~~dI~~al~~gv 290 (506)
+. .|.++|.|.++++..+ |.|. ..+|+-=|....++|.+..
T Consensus 78 v~g~~~~y~~~g~~ql~v~~i~~~g~-------G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~-------------- 136 (438)
T PRK00286 78 VRGKVSLYEPRGDYQLIVEEIEPAGI-------GALAAAFEQLKEKLAAEGLFDPERKKPLPFFPK-------------- 136 (438)
T ss_pred EEEEEEEECCCCCEEEEEEEeeeCCc-------cHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCC--------------
Confidence 64 6888888887765542 2221 2345444445555665432
Q ss_pred cEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh--------CCEEEEcCCCcccCCCCCcH-HH
Q 010610 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--------SDGAMVARGDLGAELPIEEV-PL 361 (506)
Q Consensus 291 D~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--------sDGImIaRGDLgvelg~e~V-~~ 361 (506)
-|++=--.++.-++.+...+......+.+..-==+.+|-....+|+++ .|.|+|+||-=+.| ++ +.
T Consensus 137 -~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~e----DL~~F 211 (438)
T PRK00286 137 -RIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLE----DLWAF 211 (438)
T ss_pred -EEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHH----Hhhcc
Confidence 133333356666666666666554433322211122233333333332 39999999932211 21 11
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q 010610 362 LQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivAT 381 (506)
=...++++.-+...|||.|-
T Consensus 212 n~e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 212 NDEAVARAIAASRIPVISAV 231 (438)
T ss_pred CcHHHHHHHHcCCCCEEEec
Confidence 23566778888899999873
No 195
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=70.90 E-value=7.6 Score=42.45 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=40.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 110 TKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 110 tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
-.+=+.+|..-.+.+..+.|+++|++++-++.+||....+.+.|+.+|+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 3455578877778899999999999999999999988877777777764
No 196
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=70.88 E-value=29 Score=35.49 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=54.7
Q ss_pred HHhHhhHhcCCcEEEEc------cCCCHHHHHHH-HHHHHhcCCCceEEEecC--ChhhhhhHHHHHHh-CCEEEEcCCC
Q 010610 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHEL-KNYLKSCGADIHVIVKIE--SADSIPNLHSIITA-SDGAMVARGD 349 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS------fV~saedV~~l-r~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~-sDGImIaRGD 349 (506)
+.+++.++.|+|+|++. +.-|.++-.++ +..++..+.+++||+-+- |.++++.....-+. +|++|+.+--
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~ 104 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPY 104 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 34578889999998764 33344444444 444555566788888874 22333322222222 7999997654
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 350 Lgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
+.- .+.+.+...-+.| |.+.+.|+++.
T Consensus 105 y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 105 LTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 321 1223344433444 44567888876
No 197
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=70.87 E-value=55 Score=33.76 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=78.6
Q ss_pred ceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh---hhhhcCCCC
Q 010610 318 IHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML---ESMIVHPTP 393 (506)
Q Consensus 318 i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL---eSMi~~~~P 393 (506)
+++........-++.+.+-+.. .+-||+-.-+| |+++....-+++.+.|+.+|.+|-.....+ |.++....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7899998877666666565555 68899986655 777888889999999999998765333222 111111000
Q ss_pred ChhhcccHHHHHH-hCcceeEeeccccCCCC---HHHHHHHHHHHHHHHh
Q 010610 394 TRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVSLRTE 439 (506)
Q Consensus 394 tRAEv~Dvanav~-dG~D~vmLs~ETA~G~y---PveaV~~m~~I~~~aE 439 (506)
+--...++..++. .|+|.+-.+-=|..|.| |.--++.+.+|++...
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~ 200 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN 200 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC
Confidence 0112334567886 89999998877777777 5455777777776653
No 198
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=70.81 E-value=19 Score=35.47 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=58.9
Q ss_pred HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHH
Q 010610 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPL 361 (506)
Q Consensus 283 ~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~ 361 (506)
+..++.|+..|-++| +++.-.+.++++.++. .++.|-| =|.--.+..++.++. ++-+ |.|+
T Consensus 27 ~al~~~Gi~~iEit~-~t~~a~~~i~~l~~~~-~~~~vGA--GTVl~~~~a~~a~~aGA~Fi-vsP~------------- 88 (204)
T TIGR01182 27 KALIEGGLRVLEVTL-RTPVALDAIRLLRKEV-PDALIGA--GTVLNPEQLRQAVDAGAQFI-VSPG------------- 88 (204)
T ss_pred HHHHHcCCCEEEEeC-CCccHHHHHHHHHHHC-CCCEEEE--EeCCCHHHHHHHHHcCCCEE-ECCC-------------
Confidence 344566777777776 5565555555544433 2333322 122222333344433 3333 3332
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ 416 (506)
....+++.|+++|.|++--. -+| +++..|...|+|.+=+=-
T Consensus 89 ~~~~v~~~~~~~~i~~iPG~---------~Tp-----tEi~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 89 LTPELAKHAQDHGIPIIPGV---------ATP-----SEIMLALELGITALKLFP 129 (204)
T ss_pred CCHHHHHHHHHcCCcEECCC---------CCH-----HHHHHHHHCCCCEEEECC
Confidence 13489999999999988321 123 358899999999998843
No 199
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.81 E-value=66 Score=32.08 Aligned_cols=133 Identities=12% Similarity=0.033 Sum_probs=79.1
Q ss_pred HHHhHhhHhcCCcEEEEccCC----------CHHHHHHHHHHHHhcCCCceEEEe-----c--C------ChhhhhhHHH
Q 010610 279 WDDIKFGVDNKVDFYAVSFVK----------DAQVVHELKNYLKSCGADIHVIVK-----I--E------SADSIPNLHS 335 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~----------saedV~~lr~~l~~~~~~i~IIaK-----I--E------t~~aveNlde 335 (506)
.+.++.+.++|.|+|-++.-. +.+++.++++.+++.|-.+..+.- . - ..++++.+..
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 103 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRK 103 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 356778889999999887432 678899999999988776543321 1 1 1234555655
Q ss_pred HHHh-----CCEEEEcCCCcccCCCCC----cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHH
Q 010610 336 IITA-----SDGAMVARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR 406 (506)
Q Consensus 336 Il~~-----sDGImIaRGDLgvelg~e----~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~ 406 (506)
-++. ++.|.++.++...+.+.+ .+....+++...|.++|..+.+=+ +-.+..++-.+..++...+
T Consensus 104 ~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~-----~~~~~~~~~~~~~~ll~~v- 177 (283)
T PRK13209 104 AIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI-----MDTPFMNSISKALGYAHYL- 177 (283)
T ss_pred HHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee-----cCCcccCCHHHHHHHHHHh-
Confidence 5554 467766644333222222 334455778888889998777543 3233344444444444443
Q ss_pred hCcceeEeeccc
Q 010610 407 EGADAVMLSGET 418 (506)
Q Consensus 407 dG~D~vmLs~ET 418 (506)
|.+.+-+.-++
T Consensus 178 -~~~~lgl~~D~ 188 (283)
T PRK13209 178 -NSPWFQLYPDI 188 (283)
T ss_pred -CCCccceEecc
Confidence 34556565554
No 200
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=70.79 E-value=72 Score=29.42 Aligned_cols=125 Identities=18% Similarity=0.135 Sum_probs=65.4
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCC---cccCC-CC
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD---LGAEL-PI 356 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGD---Lgvel-g~ 356 (506)
++.+.+.|+|+|-++.-.. ....++... +....+-+-+.|.+ .+.+.... +|.|++++.. -.... +.
T Consensus 65 ~~~a~~~g~~~vh~~~~~~--~~~~~~~~~---~~~~~~g~~~~t~~---~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~ 136 (196)
T cd00564 65 VDLALAVGADGVHLGQDDL--PVAEARALL---GPDLIIGVSTHSLE---EALRAEELGADYVGFGPVFPTPTKPGAGPP 136 (196)
T ss_pred HHHHHHcCCCEEecCcccC--CHHHHHHHc---CCCCEEEeeCCCHH---HHHHHhhcCCCEEEECCccCCCCCCCCCCC
Confidence 4557889999998875322 233333332 22334444444442 23333332 8999997542 11111 11
Q ss_pred CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHH
Q 010610 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m 431 (506)
..+..+ ++ .+.....|++.+..+ +. .++..+...|+|++.+.+---.-.-|.++++.+
T Consensus 137 ~~~~~~-~~---~~~~~~~pv~a~GGi----------~~---~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 137 LGLELL-RE---IAELVEIPVVAIGGI----------TP---ENAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCHHHH-HH---HHHhCCCCEEEECCC----------CH---HHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 111111 22 223367898887532 22 246677778999998864333224477776654
No 201
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.60 E-value=20 Score=37.12 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=51.4
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEcC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIaR 347 (506)
..+++..+++.|+|.|.+=.. ++++++++.+++.+.+.+.. .+||---|+ +|+.++++. +|+|-+|.
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER--VKIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC--EEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 577888999999999999887 79999999999877652212 245555555 577888877 89998873
No 202
>PRK08227 autoinducer 2 aldolase; Validated
Probab=70.58 E-value=16 Score=37.51 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=79.1
Q ss_pred HHhHhhHhcCCcEEEEc-cCCCHHHHHHHH---HHHHhcC-CCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCC
Q 010610 280 DDIKFGVDNKVDFYAVS-FVKDAQVVHELK---NYLKSCG-ADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAEL 354 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-fV~saedV~~lr---~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvel 354 (506)
-+++.|+..|+|.|.+. |+-+..+-+.++ +...++. ..+++++-...-+.+.|=.++++.+- =+| .+||+++
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aa--Ria-aELGADi 174 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLAT--RIA-AEMGAQI 174 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHH--HHH-HHHcCCE
Confidence 34677999999998774 333433333333 3333332 23566663333333444333443321 111 2333332
Q ss_pred ---CCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHH
Q 010610 355 ---PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (506)
Q Consensus 355 ---g~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m 431 (506)
++.. ...+++++.| ..||++|.- ...+++.-+..+..++..|+-++..---.-.=+.|.+.++-+
T Consensus 175 VK~~y~~--~~f~~vv~a~---~vPVviaGG-------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al 242 (264)
T PRK08227 175 IKTYYVE--EGFERITAGC---PVPIVIAGG-------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAV 242 (264)
T ss_pred EecCCCH--HHHHHHHHcC---CCcEEEeCC-------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHH
Confidence 2222 4556666655 589999862 112334447778999999999988654444446788888888
Q ss_pred HHHH
Q 010610 432 HTVS 435 (506)
Q Consensus 432 ~~I~ 435 (506)
+.|+
T Consensus 243 ~~IV 246 (264)
T PRK08227 243 HAVV 246 (264)
T ss_pred HHHH
Confidence 8776
No 203
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=70.18 E-value=1e+02 Score=31.30 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=75.2
Q ss_pred CHHHhH-hhHhcCCcEEEE-----ccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCc
Q 010610 278 DWDDIK-FGVDNKVDFYAV-----SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDL 350 (506)
Q Consensus 278 D~~dI~-~al~~gvD~Ial-----SfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDL 350 (506)
|..++. ...+.|++.|.+ -|=.+.+|+..+++.. +++|+.|==-..-. .+++.... +|+|.+.-.+|
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRKDFIIDPY-QIYEARAAGADAILLIVAAL 144 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccC
Confidence 555554 345679999987 5778999999998864 56777541000011 24444444 79998875555
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecc
Q 010610 351 GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (506)
Q Consensus 351 gvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~E 417 (506)
. +..-+++++.|+..|.-+++-++ +.+| +..+...|+|.+.+++.
T Consensus 145 ~--------~~~l~~li~~a~~lGl~~lvevh-----------~~~E---~~~A~~~gadiIgin~r 189 (260)
T PRK00278 145 D--------DEQLKELLDYAHSLGLDVLVEVH-----------DEEE---LERALKLGAPLIGINNR 189 (260)
T ss_pred C--------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHH---HHHHHHcCCCEEEECCC
Confidence 3 24668899999999999887643 3333 45677889999998753
No 204
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=70.12 E-value=1e+02 Score=31.49 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCC-HHHHHHHHHHHHHHHhcccc
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVSLRTEATIT 443 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~y-PveaV~~m~~I~~~aE~~~~ 443 (506)
-+...|+.+|.|+.+. .|..+...-+...-..|++.+..- |.| -.++++...+++++...+++
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~ 135 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTP-----AEEGMKGAIDKAEELAAETNKYVM 135 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeC-----CCCChHHHHHHHHHHHhhCCCeEe
Confidence 3445899999998887 344444444666778899977653 233 24566655555443211111
Q ss_pred CCCCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
. ..|.+ ...+..-....+.++.++++ . .||+.+-+|.++ +.+..++|...|+++.+
T Consensus 136 ~-~~~~~-----~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~ 198 (299)
T TIGR01136 136 L-DQFEN-----PANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEP 198 (299)
T ss_pred c-CCCCC-----chhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEec
Confidence 1 11111 00111112334567888886 5 788888888877 55556679999999876
No 205
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=69.75 E-value=66 Score=32.04 Aligned_cols=135 Identities=13% Similarity=0.206 Sum_probs=72.4
Q ss_pred cCHHHhHhhHhcCCcEEEEcc--CCCHHHHHHHHHHHHhcCCCceE-------EEecCCh-hhhhhHHHHHH----h-CC
Q 010610 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHV-------IVKIESA-DSIPNLHSIIT----A-SD 341 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSf--V~saedV~~lr~~l~~~~~~i~I-------IaKIEt~-~aveNldeIl~----~-sD 341 (506)
.+.+|++..++.|+|.+.+.- +++++-+.++.+.. +.++.+ ..|+..- +.-.+..++++ . ++
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~---~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~ 161 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEH---GDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS 161 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHh---hhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC
Confidence 367899999999999876653 46666666665444 333221 1122100 01112233332 2 56
Q ss_pred EEEEc-CCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccC
Q 010610 342 GAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (506)
Q Consensus 342 GImIa-RGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~ 420 (506)
.+++- |.==|..-|+ ++..+ +++ ++....|+|.+..+ -+..++.+.......|+|++|+..=--.
T Consensus 162 ~iiv~~~~~~g~~~G~-d~~~i-~~i---~~~~~ipviasGGi---------~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 162 RYVVTDVTKDGTLTGP-NLELL-REV---CARTDAPVVASGGV---------SSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred EEEEEeecCCCCccCC-CHHHH-HHH---HhhCCCCEEEeCCC---------CCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 66653 2211222233 32222 333 44568999987643 2333333332223469999999877778
Q ss_pred CCCHHHHH
Q 010610 421 GKFPLKAV 428 (506)
Q Consensus 421 G~yPveaV 428 (506)
|+++++-.
T Consensus 228 g~~~~~~~ 235 (241)
T PRK14024 228 GAFTLPEA 235 (241)
T ss_pred CCCCHHHH
Confidence 88887754
No 206
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=69.64 E-value=30 Score=35.17 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=58.1
Q ss_pred HHhHhhHhcCCcEEEEc-------cCCCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-------fV~saedV~~lr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDGImIaRG 348 (506)
+.++|.++.|+|+|++. +....|-.+-++...+..+.++.||+-+= +.++++.....-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 44578899999999853 23334444444444555556788888774 44555555555444 799999765
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
.+.. .+-+.+...-+.| |.+.+.|+++.
T Consensus 106 ~~~~-~~~~~i~~~~~~i---a~~~~~pv~lY 133 (292)
T PRK03170 106 YYNK-PTQEGLYQHFKAI---AEATDLPIILY 133 (292)
T ss_pred cCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 5421 1223444444444 44457898875
No 207
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.56 E-value=65 Score=32.41 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=69.5
Q ss_pred CccCHHHhHhhHhcCCcEEEEc----------------cCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH
Q 010610 275 TEKDWDDIKFGVDNKVDFYAVS----------------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~IalS----------------fV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~ 338 (506)
|..+...+..-++.++|+|=+. ..++++.+.++.+.+.. ..++|.+||=--.--.+..++++
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~~PVsvKiR~~~~~~~~~~~a~ 155 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LNKPIFVKIRGNCIPLDELIDAL 155 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CCCcEEEEeCCCCCcchHHHHHH
Confidence 3445555544456688888775 34577777777777763 36789999864211112223333
Q ss_pred ----h-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc-C-CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcce
Q 010610 339 ----A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM-G-KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA 411 (506)
Q Consensus 339 ----~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~-G-kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~ 411 (506)
. +|+|-|--+. ..-+.+.-+.|+..+++ + +|+|-- +..-+. .|+..++..|+|+
T Consensus 156 ~l~~aGad~i~Vd~~~-------~g~~~a~~~~I~~i~~~~~~ipIIgN---------GgI~s~---eda~e~l~~GAd~ 216 (231)
T TIGR00736 156 NLVDDGFDGIHVDAMY-------PGKPYADMDLLKILSEEFNDKIIIGN---------NSIDDI---ESAKEMLKAGADF 216 (231)
T ss_pred HHHHcCCCEEEEeeCC-------CCCchhhHHHHHHHHHhcCCCcEEEE---------CCcCCH---HHHHHHHHhCCCe
Confidence 2 7999884221 11122344445555544 3 887753 333344 4667777789999
Q ss_pred eEee
Q 010610 412 VMLS 415 (506)
Q Consensus 412 vmLs 415 (506)
||+.
T Consensus 217 Vmvg 220 (231)
T TIGR00736 217 VSVA 220 (231)
T ss_pred EEEc
Confidence 9985
No 208
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=69.53 E-value=1e+02 Score=30.16 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=70.0
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+++.. |....-......-..|++.+...+. | -++.+...+++++-...++-
T Consensus 64 alA~~a~~~g~~~~v~~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~~~~~ 126 (244)
T cd00640 64 ALAAAAARLGLKCTIVM-----------PEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPGAYYV 126 (244)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCCCEec
Confidence 45568999999998863 3333334466677789987776432 4 46666666665542222211
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC---c-eEEEEcCChHHHHH----HHhhCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG---T-SIVVFTRTGFMAIL----LSHYRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~---a-~Iiv~T~sG~tA~~----lS~~RP~~pIia~T~ 505 (506)
.+ | ......+.....+.++.++++ . .|++.+-+|.|+-- +..+.|...|+++.+
T Consensus 127 ~~-~------~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 127 NQ-F------DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred CC-C------CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 11 1 111122333344556676665 4 78898889988764 445568888988753
No 209
>PLN02970 serine racemase
Probab=69.48 E-value=85 Score=32.71 Aligned_cols=151 Identities=14% Similarity=0.098 Sum_probs=86.3
Q ss_pred ceEEEecCChh---------hhhhHHHHHHh--CCEEEEc-CCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhh
Q 010610 318 IHVIVKIESAD---------SIPNLHSIITA--SDGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLE 385 (506)
Q Consensus 318 i~IIaKIEt~~---------aveNldeIl~~--sDGImIa-RGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLe 385 (506)
..|+.|.|... |..-+....+. ..+|+.+ .|..|. -+...|+.+|.|+.+..
T Consensus 42 ~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~------------alA~~a~~~G~~~~ivv---- 105 (328)
T PLN02970 42 RSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAA------------ALALAAKLRGIPAYIVV---- 105 (328)
T ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHH------------HHHHHHHHcCCCEEEEE----
Confidence 47999999875 22222222111 3344443 233333 34558999999998873
Q ss_pred hhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHH
Q 010610 386 SMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAY 465 (506)
Q Consensus 386 SMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~ 465 (506)
|..+.-..+.+.-..|++.+..-+ . .-++.+...+++++ ...++. ..|.+ ....+....
T Consensus 106 -------p~~~~~~k~~~~~~~GA~Vi~~~~-----~-~~~~~~~a~~la~~-~g~~~~-~~~~n------~~~~~g~~t 164 (328)
T PLN02970 106 -------PKNAPACKVDAVIRYGGIITWCEP-----T-VESREAVAARVQQE-TGAVLI-HPYND------GRVISGQGT 164 (328)
T ss_pred -------CCCCCHHHHHHHHhcCCEEEEeCC-----C-HHHHHHHHHHHHHh-cCCEEe-CCCCC------cchhhehHH
Confidence 222222235566778999876532 2 34566666666543 222221 11211 011122233
Q ss_pred HHHHHHhhcC-c-eEEEEcCChHHHHHHHhh----CCCCeEEEEeC
Q 010610 466 HATMMSNTLG-T-SIVVFTRTGFMAILLSHY----RPSGTIFAFTN 505 (506)
Q Consensus 466 ~av~~A~~~~-a-~Iiv~T~sG~tA~~lS~~----RP~~pIia~T~ 505 (506)
-+.++.++++ . .||+..-+|.+..-++++ .|...|+++-+
T Consensus 165 ~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep 210 (328)
T PLN02970 165 IALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEP 210 (328)
T ss_pred HHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4567777775 4 888888899887776665 89999999865
No 210
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=69.48 E-value=79 Score=31.92 Aligned_cols=140 Identities=21% Similarity=0.271 Sum_probs=91.1
Q ss_pred CccCHHH-hHhhHh-cCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHh-----CCEEEE
Q 010610 275 TEKDWDD-IKFGVD-NKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-----SDGAMV 345 (506)
Q Consensus 275 tekD~~d-I~~al~-~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-----sDGImI 345 (506)
+++++.+ |..+.+ +++|+|=+-+-..-+++.++.++..+.| .|++ --|.-...+++.+++.. +|-+=|
T Consensus 76 ~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKi 152 (231)
T COG0710 76 SEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKI 152 (231)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEE
Confidence 3444444 445555 4699999988777778888888776544 4444 24444455566666654 465555
Q ss_pred cCCCcccCCCC--CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCccee--EeeccccCC
Q 010610 346 ARGDLGAELPI--EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV--MLSGETAHG 421 (506)
Q Consensus 346 aRGDLgvelg~--e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~v--mLs~ETA~G 421 (506)
+ -+|- +++...-+.....-. +++|+++. ||-+...+|| +++.+. |.... .+..-||-|
T Consensus 153 A------vm~~~~~DvL~ll~~~~~~~~-~~~p~i~i-----~MG~~G~~SR-----v~~~~~-GS~~tya~~~~~sAPG 214 (231)
T COG0710 153 A------VMPQSKEDVLDLLEATREFKE-AEKPVITI-----SMGKTGKISR-----VAGPVF-GSPITYASLDKPSAPG 214 (231)
T ss_pred E------ecCCCHHHHHHHHHHHHhccc-cCCCEEEE-----ecCCCCchhh-----hhHhhh-CCceeEeecCCCCCCC
Confidence 4 3333 355555444443333 99999986 6999999999 777776 44444 366789999
Q ss_pred CCHHHHHHHHHHHH
Q 010610 422 KFPLKAVKVMHTVS 435 (506)
Q Consensus 422 ~yPveaV~~m~~I~ 435 (506)
..+++.++.+..+.
T Consensus 215 Qi~v~~l~~~~~~l 228 (231)
T COG0710 215 QISVDELRKILTLL 228 (231)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999888776654
No 211
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=69.44 E-value=55 Score=34.95 Aligned_cols=92 Identities=24% Similarity=0.335 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHHh-CCEEEEc-CCCcccCCCCCcHHHHHHHHHHHHHHc--C
Q 010610 300 DAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITA-SDGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSM--G 374 (506)
Q Consensus 300 saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~-sDGImIa-RGDLgvelg~e~V~~~Qk~II~~c~~~--G 374 (506)
+.+++.++++.. +.+|++| |-++ +......+. +|+|.|. -| |-.+. ..+.....+.+.+++. .
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~ld--~~~~~~~~l~~i~~a~~~~ 276 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQLD--GGPASFDSLPEIAEAVNHR 276 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccCC--CCchHHHHHHHHHHHhCCC
Confidence 677888888765 4689999 3222 223333333 7999984 12 22221 1111112222223333 4
Q ss_pred CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 375 KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 375 kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
.|+|....+- .-.|+..++..|+|+||+.
T Consensus 277 i~vi~dGGIr------------~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 277 VPIIFDSGVR------------RGEHVFKALASGADAVAVG 305 (351)
T ss_pred CeEEEECCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 8888765332 2468999999999999984
No 212
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=69.42 E-value=1.9e+02 Score=32.21 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=96.0
Q ss_pred CCccCHHHhHh-hHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCceEEEecC-ChhhhhhHHHHHHh-----CCE--E
Q 010610 274 ITEKDWDDIKF-GVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIE-SADSIPNLHSIITA-----SDG--A 343 (506)
Q Consensus 274 ltekD~~dI~~-al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i~IIaKIE-t~~aveNldeIl~~-----sDG--I 343 (506)
+|..|+..|.. ..+.|+|.|=+.| +.+..|.+.++.+... .....+.+-.- +.+.+ |.-++. .+. +
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~-~~~~~i~al~r~~~~di---d~a~~al~~~~~~~v~i 95 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIART-VKNPRVCGLARCVEKDI---DAAAEALKPAEKFRIHT 95 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHh-CCCCEEEEEcCCCHHhH---HHHHHhccccCCCEEEE
Confidence 45666666654 4568999997765 5678888888776543 34445555443 23333 333332 233 3
Q ss_pred EEcCCCcccC----CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhh---cccHHH-HHHhCcceeEee
Q 010610 344 MVARGDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE---VSDIAI-AVREGADAVMLS 415 (506)
Q Consensus 344 mIaRGDLgve----lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAE---v~Dvan-av~dG~D~vmLs 415 (506)
++.-.|+-.+ ...+++.....+.++.|+.+|.-|.+.. ...+|++ +.+++. +...|+|.+.|.
T Consensus 96 ~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~---------Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~ 166 (494)
T TIGR00973 96 FIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSC---------EDAGRTEIPFLARIVEAAINAGATTINIP 166 (494)
T ss_pred EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEc---------CCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3333333322 2234666777889999999999877653 2445555 444445 456699999994
Q ss_pred ccccCCCCHHHHHHHHHHHHHHH
Q 010610 416 GETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 416 ~ETA~G~yPveaV~~m~~I~~~a 438 (506)
+|.=+-.|.+.-+.+..+.+..
T Consensus 167 -DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 167 -DTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999888888887554
No 213
>PRK12483 threonine dehydratase; Reviewed
Probab=69.32 E-value=87 Score=35.23 Aligned_cols=152 Identities=11% Similarity=0.083 Sum_probs=90.6
Q ss_pred ceEEEecCChhhhhhHH---------HHHHh--CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhh
Q 010610 318 IHVIVKIESADSIPNLH---------SIITA--SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLES 386 (506)
Q Consensus 318 i~IIaKIEt~~aveNld---------eIl~~--sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeS 386 (506)
..|+.|.|+.+-.-.+. .+.+. ..||+-+ +-|- .=.-+...|+..|.|+.+.
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~a------SaGN-----ha~gvA~aA~~lGi~~~Iv------ 114 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA------SAGN-----HAQGVALAAARLGVKAVIV------ 114 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEE------CCCH-----HHHHHHHHHHHhCCCEEEE------
Confidence 36899999877553332 22211 3455433 2221 1224556899999999886
Q ss_pred hhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHH
Q 010610 387 MIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYH 466 (506)
Q Consensus 387 Mi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~ 466 (506)
.|..+....+...-..|++.++. |...-++++...+++++- ...+. ..|.+ ......-..-
T Consensus 115 -----mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e~-g~~~v-~pfdd------~~viaGqgTi 175 (521)
T PRK12483 115 -----MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEEE-GLTFV-PPFDD------PDVIAGQGTV 175 (521)
T ss_pred -----ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHhc-CCeee-CCCCC------hHHHHHHHHH
Confidence 34434444577788899986653 344568887777776542 22111 11111 1222222334
Q ss_pred HHHHHhhcC--c-eEEEEcCChHHHHHHHh----hCCCCeEEEEeC
Q 010610 467 ATMMSNTLG--T-SIVVFTRTGFMAILLSH----YRPSGTIFAFTN 505 (506)
Q Consensus 467 av~~A~~~~--a-~Iiv~T~sG~tA~~lS~----~RP~~pIia~T~ 505 (506)
+.++.++++ . .||+..-+|.+.--+++ ++|.+.|++|-+
T Consensus 176 g~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep 221 (521)
T PRK12483 176 AMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEP 221 (521)
T ss_pred HHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 667788775 5 89999888887665554 489999999865
No 214
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=69.29 E-value=9.4 Score=40.57 Aligned_cols=48 Identities=13% Similarity=0.246 Sum_probs=41.6
Q ss_pred eEEEecCCCCCCHHHHHHHHHh--CCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 111 KIVCTIGPSTNTREMIWKLAEA--GMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 111 KIi~TiGPss~~~e~i~~li~a--Gm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
.+..++|-..++.|.+++|+++ |+|+.=|..|||.-+...++|+.||+
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 4556889888999999999995 99999999999998888878777775
No 215
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=69.04 E-value=52 Score=35.30 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=92.6
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecC--ChhhhhhHHHHHHhCCEEEEcCCCcccCCCCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIE--SADSIPNLHSIITASDGAMVARGDLGAELPIE 357 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~sDGImIaRGDLgvelg~e 357 (506)
+.|+...+.|+|.|-+. |.+.++.+.++.+.++. +++++|-|- -.-|+ ..+=.-+|++-|-||.+ .
T Consensus 46 ~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHFd~~lAl---~a~~~G~~~iRINPGNi------g 113 (360)
T PRK00366 46 AQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHFDYRLAL---AAAEAGADALRINPGNI------G 113 (360)
T ss_pred HHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCCCHHHHH---HHHHhCCCEEEECCCCC------C
Confidence 33455567999998877 67778888877766543 689999763 33333 33323389999999998 3
Q ss_pred cHHHHHHHHHHHHHHcCCcEEEEe--hhhhhhhc--CCCCChhh-----cccHHHHHHhCcceeEeeccccCCCCHHHHH
Q 010610 358 EVPLLQEEIIRTCRSMGKAVIVAT--NMLESMIV--HPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAV 428 (506)
Q Consensus 358 ~V~~~Qk~II~~c~~~GkPvivAT--qmLeSMi~--~~~PtRAE-----v~Dvanav~dG~D~vmLs~ETA~G~yPveaV 428 (506)
....--+.++++|+++|+|+=+-. .-|+.-+. ...||-.- +..+.-+-..|++=+.+|- .-..+..+|
T Consensus 114 ~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~---KsS~v~~~i 190 (360)
T PRK00366 114 KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISV---KASDVQDLI 190 (360)
T ss_pred chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHH
Confidence 456677899999999999965543 22332222 22344321 2223345667999999984 445566666
Q ss_pred HHHHHHHHHH
Q 010610 429 KVMHTVSLRT 438 (506)
Q Consensus 429 ~~m~~I~~~a 438 (506)
+.-+.++++.
T Consensus 191 ~ayrlla~~~ 200 (360)
T PRK00366 191 AAYRLLAKRC 200 (360)
T ss_pred HHHHHHHhcC
Confidence 6666555443
No 216
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=68.98 E-value=28 Score=34.31 Aligned_cols=145 Identities=20% Similarity=0.229 Sum_probs=89.7
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhh----------hhhHHHHHHh-CCEEEEc-
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS----------IPNLHSIITA-SDGAMVA- 346 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~a----------veNldeIl~~-sDGImIa- 346 (506)
.+.++.+++.+++.|+++ +.-+...++.+...+..+.++.....-.. +...++.++. +|+|-+-
T Consensus 22 ~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi 97 (236)
T PF01791_consen 22 KKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVI 97 (236)
T ss_dssp HHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeec
Confidence 345578889999999887 34466666666544456788888775322 4445555554 6755442
Q ss_pred -CCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhh---------cccHHH-HHHhCcceeEee
Q 010610 347 -RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE---------VSDIAI-AVREGADAVMLS 415 (506)
Q Consensus 347 -RGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAE---------v~Dvan-av~dG~D~vmLs 415 (506)
.|-++-+- ...+..-.+++.+.|+.+|.|+|+- +.|+..| +...+. +...|+|.+=.+
T Consensus 98 ~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE----------~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~ 166 (236)
T PF01791_consen 98 NYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE----------PYLRGEEVADEKKPDLIARAARIAAELGADFVKTS 166 (236)
T ss_dssp EHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE----------ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred ccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE----------EecCchhhcccccHHHHHHHHHHHHHhCCCEEEec
Confidence 11111111 2356677789999999999999975 2444444 222332 577899998765
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHh
Q 010610 416 GETAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 416 ~ETA~G~yPveaV~~m~~I~~~aE 439 (506)
.=.. ...-.+.++.|.+++..+.
T Consensus 167 tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 167 TGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp -SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred CCcc-ccccHHHHHHHHHHHHhcC
Confidence 3223 4556788999988887654
No 217
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=68.92 E-value=79 Score=31.34 Aligned_cols=130 Identities=13% Similarity=0.201 Sum_probs=76.5
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhh-------hhhHHHHHH----hCCEEEEc
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS-------IPNLHSIIT----ASDGAMVA 346 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~a-------veNldeIl~----~sDGImIa 346 (506)
+.+|++..++.|++-|.+... ...+ ..+++.++..+.+ .+++-|....+ ..++.+.++ .++.+++.
T Consensus 89 ~~edv~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 165 (233)
T cd04723 89 SLENAQEWLKRGASRVIVGTE-TLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVL 165 (233)
T ss_pred CHHHHHHHHHcCCCeEEEcce-eccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEE
Confidence 478899999999998887643 3444 5666666665543 35554544333 122333333 35777764
Q ss_pred CCCcccCCCCC--cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCH
Q 010610 347 RGDLGAELPIE--EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (506)
Q Consensus 347 RGDLgvelg~e--~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yP 424 (506)
|+..+-... .+.. -+++ ++....|++.+.. .-+ ..|+..+...|+|++++..=--.|+++
T Consensus 166 --di~~~G~~~g~~~~~-~~~i---~~~~~ipvi~~GG---------i~s---~edi~~l~~~G~~~vivGsal~~g~~~ 227 (233)
T cd04723 166 --DIDRVGSGQGPDLEL-LERL---AARADIPVIAAGG---------VRS---VEDLELLKKLGASGALVASALHDGGLT 227 (233)
T ss_pred --EcCccccCCCcCHHH-HHHH---HHhcCCCEEEeCC---------CCC---HHHHHHHHHcCCCEEEEehHHHcCCCC
Confidence 333322111 2221 2333 4456899998863 223 345667777899999997666677777
Q ss_pred HHHH
Q 010610 425 LKAV 428 (506)
Q Consensus 425 veaV 428 (506)
.+.+
T Consensus 228 ~~~~ 231 (233)
T cd04723 228 LEDV 231 (233)
T ss_pred HHHH
Confidence 6544
No 218
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=68.91 E-value=57 Score=33.44 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=57.2
Q ss_pred HHHhHhhHhcC-CcEEEEc------cCCCHHHHHHHH-HHHHhcCCCceEEEecC---ChhhhhhHHHHHHh-CCEEEEc
Q 010610 279 WDDIKFGVDNK-VDFYAVS------FVKDAQVVHELK-NYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVA 346 (506)
Q Consensus 279 ~~dI~~al~~g-vD~IalS------fV~saedV~~lr-~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDGImIa 346 (506)
.+.+++.++.| +|+|.+. +.=+.++-.++- ...+..+.++.||+.+- +.++++....--+. +||+|+.
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~ 103 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV 103 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 34467888999 9999775 444555554444 44555566788999885 44555555554444 7999997
Q ss_pred CCCcccCCCCCcHHHHHHHHHHHHHHc-CCcEEEE
Q 010610 347 RGDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVA 380 (506)
Q Consensus 347 RGDLgvelg~e~V~~~Qk~II~~c~~~-GkPvivA 380 (506)
+-.+-- ...+++...-+.+ |.+. +.|+++-
T Consensus 104 ~P~y~~-~~~~~i~~yf~~v---~~~~~~lpv~lY 134 (290)
T TIGR00683 104 TPFYYK-FSFPEIKHYYDTI---IAETGGLNMIVY 134 (290)
T ss_pred CCcCCC-CCHHHHHHHHHHH---HhhCCCCCEEEE
Confidence 543211 1112333333333 3344 5787754
No 219
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=68.56 E-value=95 Score=31.87 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=85.0
Q ss_pred CCCccCHHHhHhhHhcCCcEEEEccCC-------------CHHHHHHHHHHHHhcCCCceEEEecC------Ch-hhhhh
Q 010610 273 SITEKDWDDIKFGVDNKVDFYAVSFVK-------------DAQVVHELKNYLKSCGADIHVIVKIE------SA-DSIPN 332 (506)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~IalSfV~-------------saedV~~lr~~l~~~~~~i~IIaKIE------t~-~aveN 332 (506)
-+|-+|.---+.+-+.|+|.|.+..-- +.+++...-+.+.+.-....|++=++ ++ ++++|
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHH
Confidence 446788888888888999999764210 12222222222222223446888775 22 46788
Q ss_pred HHHHHH-h-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEE----EEehhhhh----hhcCCCCChh-h-ccc
Q 010610 333 LHSIIT-A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI----VATNMLES----MIVHPTPTRA-E-VSD 400 (506)
Q Consensus 333 ldeIl~-~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvi----vATqmLeS----Mi~~~~PtRA-E-v~D 400 (506)
.-.+++ . ++||-|-=| ..+...|+++.++|+||+ +--|--.. .+......++ | +.+
T Consensus 99 a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~r 166 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLED 166 (264)
T ss_pred HHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHH
Confidence 888888 3 789998644 256677888889999996 21121111 1111112222 2 445
Q ss_pred HHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHh
Q 010610 401 IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 401 vanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE 439 (506)
.-.+...|+|+++|- |- |. +.+..|+++..
T Consensus 167 a~a~~eAGA~~i~lE-----~v-~~---~~~~~i~~~l~ 196 (264)
T PRK00311 167 AKALEEAGAFALVLE-----CV-PA---ELAKEITEALS 196 (264)
T ss_pred HHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 555668899999993 22 33 35666666554
No 220
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=68.49 E-value=1.2e+02 Score=30.98 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=67.7
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCH-HHHHHHHHHHHHHHhccccC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP-LKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yP-veaV~~m~~I~~~aE~~~~~ 444 (506)
+...|+.+|.|+.+.. |....-.-....-..|++.+..- |.|. .++++...++..+-...+.+
T Consensus 72 lA~~a~~~Gl~~~i~v-----------p~~~~~~k~~~~~~~GA~v~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (298)
T TIGR01139 72 LAMVAAARGYKLILTM-----------PETMSIERRKLLKAYGAELVLTP-----GAEGMKGAIAKAEEIAASTPNSYFM 135 (298)
T ss_pred HHHHHHHcCCeEEEEe-----------CCccCHHHHHHHHHcCCEEEEEC-----CCCCHHHHHHHHHHHHHhCCCcEEc
Confidence 4458999999998873 32222223556677899988663 3453 46666555554332111111
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
...|.+ +..+..-....+-++.++++ . .||+.+-+|.++ +.+..++|...|+++-+
T Consensus 136 ~~~~~n-----~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~ 198 (298)
T TIGR01139 136 LQQFEN-----PANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEP 198 (298)
T ss_pred ccccCC-----cccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEec
Confidence 111111 01111112233456767775 4 889998889765 45555679999999876
No 221
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=68.44 E-value=17 Score=38.77 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=56.8
Q ss_pred CHHHhHhhHhcCCcEEEEccC------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFV------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV------~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaR 347 (506)
..+|.+.+.+.|+|+|.+|.- ..+..+..+.++....+.++.||+- .||.+-.+|+++ +|++||||
T Consensus 231 ~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr 306 (351)
T cd04737 231 SPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGR 306 (351)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECH
Confidence 347788899999999999732 2223344455544444456777773 455555555554 89999999
Q ss_pred CCccc--CCCCC----cHHHHHHHHHHHHHHcCCc
Q 010610 348 GDLGA--ELPIE----EVPLLQEEIIRTCRSMGKA 376 (506)
Q Consensus 348 GDLgv--elg~e----~V~~~Qk~II~~c~~~GkP 376 (506)
.=|-. .-|-+ .+..+++++-......|..
T Consensus 307 ~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 307 PVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 54421 11222 3444555666666666644
No 222
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=68.37 E-value=70 Score=33.37 Aligned_cols=114 Identities=15% Similarity=0.244 Sum_probs=75.9
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHH-c
Q 010610 296 SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRS-M 373 (506)
Q Consensus 296 SfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~-~ 373 (506)
.-..++++|+++++.+ +++||+|+=--- +...+.+.+. +|.| | ..+..-+ -...+...+. .
T Consensus 51 ~R~~~p~~I~~I~~~V-----~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~~f 113 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKKKF 113 (287)
T ss_pred eecCCHHHHHHHHHhC-----CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHHHc
Confidence 3456777787777755 688998764322 5555555555 7877 4 2232222 2334444343 4
Q ss_pred CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhcc
Q 010610 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEAT 441 (506)
Q Consensus 374 GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~ 441 (506)
+.|++.-. ..+.+.-+++..|+|.|--++|--.| +-+|+|+-|+.+-.++...
T Consensus 114 ~vpfmad~--------------~~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 114 KVPFVCGA--------------RDLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCEEccC--------------CCHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 77866432 23445778999999999999998888 6799999999998888754
No 223
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.97 E-value=67 Score=32.78 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEeh
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATq 382 (506)
.++.++++.++. .+.+++-+-+.+.++-+. +.+|.+-||-+++-- ..+++++.+.||||++.|.
T Consensus 67 gl~~L~~~~~~~--Gl~~~Tev~d~~~v~~~~---e~vdilqIgs~~~~n-----------~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 67 GIRYLHEVCQEF--GLLSVSEIMSERQLEEAY---DYLDVIQVGARNMQN-----------FEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHHHc--CCCEEEeeCCHHHHHHHH---hcCCEEEECcccccC-----------HHHHHHHHccCCeEEEeCC
Confidence 355556655543 466777666666655544 468999999776643 5678888889999999875
Q ss_pred hhhhhhcCCCCChhhcccHHHHHH-hCcceeEee
Q 010610 383 MLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLS 415 (506)
Q Consensus 383 mLeSMi~~~~PtRAEv~Dvanav~-dG~D~vmLs 415 (506)
+ .+|-.|+...+..+. .|..-++|.
T Consensus 131 ~--------~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 131 L--------MATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred C--------CCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 2 457788888888777 476667775
No 224
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.97 E-value=42 Score=33.18 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=70.5
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhC-C--EEEEcCCC--------cccCCCCC--c
Q 010610 292 FYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITAS-D--GAMVARGD--------LGAELPIE--E 358 (506)
Q Consensus 292 ~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~s-D--GImIaRGD--------Lgvelg~e--~ 358 (506)
.|.+=...++++...+-+.|-+.|-... =.-.-|+.+++.+.++.+.. | .++||-|= ..++.|.+ -
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~i-Eit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAI-EVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEE-EEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 3455555688888888777766554322 22334788888888887764 2 47787662 11222211 1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 359 V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
-|.....+++.|+++|.|++=-+. | .+++..+...|+|.+-+-
T Consensus 94 sP~~~~~v~~~~~~~~i~~iPG~~-----------T---~~E~~~A~~~Gad~vklF 136 (213)
T PRK06552 94 SPSFNRETAKICNLYQIPYLPGCM-----------T---VTEIVTALEAGSEIVKLF 136 (213)
T ss_pred CCCCCHHHHHHHHHcCCCEECCcC-----------C---HHHHHHHHHcCCCEEEEC
Confidence 234457899999999999984321 2 234778889999999983
No 225
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=67.85 E-value=11 Score=40.07 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=42.2
Q ss_pred eEEEecCCCCCCHHHHHHHHHhC--CcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 111 KIVCTIGPSTNTREMIWKLAEAG--MNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 111 KIi~TiGPss~~~e~i~~li~aG--m~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
.+.+++|-..++.|.+++|+++| .|+.=|..|||..+...++|+.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 35558999989999999999996 9999999999999888888888875
No 226
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=67.67 E-value=57 Score=33.18 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 301 AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 301 aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
.+.++.++++.++. .+.+++-+-+...++-+.+ .+|.+-||-+++.- ..+++++.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVAE---YADILQIGARNMQN-----------FELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHHh---hCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 45677778877654 4678887777777666554 47999999776532 34788888999999999
Q ss_pred ehhhhhhhcCCCCChhhcccHHHHHH-hCcceeEee
Q 010610 381 TNMLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLS 415 (506)
Q Consensus 381 TqmLeSMi~~~~PtRAEv~Dvanav~-dG~D~vmLs 415 (506)
|.|. +|-.|+...+..+. .|.+-++|.
T Consensus 139 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 8654 35678777777775 577666664
No 227
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=67.62 E-value=20 Score=35.28 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=43.6
Q ss_pred EecCCCEEEEEEec--CCC---CceEEEeccchhh--hhcCCCCEEEEe--CCeEEEEEEEEeCCeEE
Q 010610 189 TLTSGQEFTFTIQR--GVG---SAECVSVNYDDFV--NDVEVGDMLLVD--GGMMSLLVKSKTEDSVK 247 (506)
Q Consensus 189 ~Lk~G~~v~lt~~~--~~~---~~~~i~v~~~~l~--~~v~~Gd~IliD--DG~i~l~V~~~~~~~v~ 247 (506)
-++.|+++++++.. .++ ......++-..|. ..+++|+.++.+ +|.+.++|++++++.|+
T Consensus 51 G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~ 118 (196)
T PRK10737 51 GHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVV 118 (196)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEE
Confidence 46899999998873 222 2335566666664 358999999874 78899999999998854
No 228
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=67.23 E-value=96 Score=29.76 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=65.7
Q ss_pred HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCC---Cc---ccCCCC
Q 010610 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG---DL---GAELPI 356 (506)
Q Consensus 283 ~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRG---DL---gvelg~ 356 (506)
+.+.+.++|+|-+..-++.+.+..+++.+ +..+.....+-+....+.....-..+|++++.-. +. |...++
T Consensus 67 ~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~---~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~ 143 (203)
T cd00405 67 EIAEELGLDVVQLHGDESPEYCAQLRARL---GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDW 143 (203)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceECh
Confidence 45678899999999877788888888765 3332211445444333322222234799988532 21 233343
Q ss_pred CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhC-cceeEeec--cccCCC
Q 010610 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLSG--ETAHGK 422 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG-~D~vmLs~--ETA~G~ 422 (506)
+.+..+ . ..+|++.|..+ .|. .+..++..| +|++-+++ |++-|.
T Consensus 144 ~~l~~~--------~-~~~PvilaGGI--------~~~-----Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 144 SLLRGL--------A-SRKPVILAGGL--------TPD-----NVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred HHhhcc--------c-cCCCEEEECCC--------ChH-----HHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 333211 1 56899998632 232 266666666 77776543 555564
No 229
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=67.02 E-value=72 Score=33.61 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=85.6
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHH--------------------------------------------HhcC
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYL--------------------------------------------KSCG 315 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l--------------------------------------------~~~~ 315 (506)
.-|.-+++.|+|+|.+. ++|+..++++= ...|
T Consensus 19 ~~it~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~G 94 (376)
T COG1465 19 KRITAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDRG 94 (376)
T ss_pred HHHHHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhcC
Confidence 45678899999998664 46666666421 1234
Q ss_pred CCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCCh
Q 010610 316 ADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR 395 (506)
Q Consensus 316 ~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtR 395 (506)
........|.+.+--+-..++..++|.+++---|.-+ +|+|.+.. . .++-+--++|. .-+-
T Consensus 95 ~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA-------~-l~~e~~kliA~----------V~sa 155 (376)
T COG1465 95 HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIA-------D-LQHEKVKLIAG----------VKSA 155 (376)
T ss_pred cceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHH-------H-hhccceEEEEE----------eccH
Confidence 4566778888888777777777778887776555543 56665321 1 11223333332 2234
Q ss_pred hhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhc
Q 010610 396 AEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (506)
Q Consensus 396 AEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~ 440 (506)
.|..-....+..|+|+++|.++ .| +-++-...+++++|+
T Consensus 156 eEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~ 194 (376)
T COG1465 156 EEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAES 194 (376)
T ss_pred HHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhcc
Confidence 4555566788999999999744 45 667778888888884
No 230
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=66.90 E-value=1.5e+02 Score=30.10 Aligned_cols=201 Identities=16% Similarity=0.124 Sum_probs=107.9
Q ss_pred CCCccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHH
Q 010610 258 SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHS 335 (506)
Q Consensus 258 s~KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNlde 335 (506)
-|-|...|+..++ ++.-.+.++...+.|+|.|=+.+ -.++++...++.+ ...+....+.+- .-+.++++.
T Consensus 8 LRDG~Q~~~~~~s----~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l-~~~~~~~~v~~~~r~~~~di~~--- 79 (262)
T cd07948 8 LREGEQFANAFFD----TEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAI-AKLGLKAKILTHIRCHMDDARI--- 79 (262)
T ss_pred CCCcCcCCCCCCC----HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHH-HhCCCCCcEEEEecCCHHHHHH---
Confidence 4556666665443 23234445566789999997743 3344444444443 333443444332 233333332
Q ss_pred HHHh-CCEEEEc--CCC------cccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHH
Q 010610 336 IITA-SDGAMVA--RGD------LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR 406 (506)
Q Consensus 336 Il~~-sDGImIa--RGD------Lgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~ 406 (506)
.++. .|.|.+- -.| ++ ...++.....+++++.++.+|..|.+.-. ++ . ..| ...+.+.+..+.
T Consensus 80 a~~~g~~~i~i~~~~S~~~~~~~~~--~~~~e~~~~~~~~i~~a~~~G~~v~~~~e--da--~-r~~-~~~l~~~~~~~~ 151 (262)
T cd07948 80 AVETGVDGVDLVFGTSPFLREASHG--KSITEIIESAVEVIEFVKSKGIEVRFSSE--DS--F-RSD-LVDLLRVYRAVD 151 (262)
T ss_pred HHHcCcCEEEEEEecCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHCCCeEEEEEE--ee--C-CCC-HHHHHHHHHHHH
Confidence 2322 4654442 111 11 22346677778899999999988776531 11 1 111 334556665544
Q ss_pred h-CcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCceEEEEcCCh
Q 010610 407 E-GADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTG 485 (506)
Q Consensus 407 d-G~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~Iiv~T~sG 485 (506)
+ |+|.+.| .+|.=.-+|.+.-+++..+-+..- .+ +.-...++..-++| -...|-+.|+-+|=.|-.|
T Consensus 152 ~~g~~~i~l-~Dt~G~~~P~~v~~~~~~~~~~~~--~~-------i~~H~Hn~~Gla~a--n~~~a~~aG~~~vd~s~~G 219 (262)
T cd07948 152 KLGVNRVGI-ADTVGIATPRQVYELVRTLRGVVS--CD-------IEFHGHNDTGCAIA--NAYAALEAGATHIDTTVLG 219 (262)
T ss_pred HcCCCEEEE-CCcCCCCCHHHHHHHHHHHHHhcC--Ce-------EEEEECCCCChHHH--HHHHHHHhCCCEEEEeccc
Confidence 4 9999888 488888999988888877754321 11 11111223323333 3445666677555455554
Q ss_pred H
Q 010610 486 F 486 (506)
Q Consensus 486 ~ 486 (506)
-
T Consensus 220 l 220 (262)
T cd07948 220 I 220 (262)
T ss_pred c
Confidence 3
No 231
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=66.65 E-value=1.5e+02 Score=29.87 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=84.1
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCC--CceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA--DIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~--~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~ 356 (506)
.+.++.-.+.|+|+|.+- +++..++.+.-+.+++.|. ...+..+=+| -++.++.++...|.|+| ++++=|+
T Consensus 81 ~~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi----MtV~PGf 153 (228)
T PRK08091 81 FEVAKACVAAGADIVTLQ-VEQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI----LTLDPRT 153 (228)
T ss_pred HHHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE----EEECCCC
Confidence 456666678999998776 4656677777788888898 7888888888 47889999999998888 3444443
Q ss_pred C---cHHHHHHHHHH---HHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccC-C-CCHHHHH
Q 010610 357 E---EVPLLQEEIIR---TCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH-G-KFPLKAV 428 (506)
Q Consensus 357 e---~V~~~Qk~II~---~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~-G-~yPveaV 428 (506)
. -.+..-++|-+ .-.++|.-+.+.. ... =+. .-+......|+|.+++. |++ | +-|.+.+
T Consensus 154 gGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV-------DGG-I~~---~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i 220 (228)
T PRK08091 154 GTKAPSDLILDRVIQVENRLGNRRVEKLISI-------DGS-MTL---ELASYLKQHQIDWVVSG--SALFSQGELKTTL 220 (228)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCceEEE-------ECC-CCH---HHHHHHHHCCCCEEEEC--hhhhCCCCHHHHH
Confidence 2 22223333322 2233443332221 111 111 12445678899988774 333 3 2467777
Q ss_pred HHHHHH
Q 010610 429 KVMHTV 434 (506)
Q Consensus 429 ~~m~~I 434 (506)
+.+++.
T Consensus 221 ~~l~~~ 226 (228)
T PRK08091 221 KEWKSS 226 (228)
T ss_pred HHHHHh
Confidence 777653
No 232
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=66.63 E-value=74 Score=32.46 Aligned_cols=146 Identities=17% Similarity=0.198 Sum_probs=84.5
Q ss_pred CCCccCHHHhHhhHhcCCcEEEEccCC-------------CHHHHHHHHHHHHhcCCCceEEEecC-------Chhhhhh
Q 010610 273 SITEKDWDDIKFGVDNKVDFYAVSFVK-------------DAQVVHELKNYLKSCGADIHVIVKIE-------SADSIPN 332 (506)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~IalSfV~-------------saedV~~lr~~l~~~~~~i~IIaKIE-------t~~aveN 332 (506)
-+|-+|.---+.+-+.|+|.|.+..-- +-+++..--+.+.+.-....|++=++ -.++++|
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~ 95 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN 95 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Confidence 346778777777788899999754210 11222222222222223344888776 1334777
Q ss_pred HHHHHH-h-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE----ehhhhhh----hcCCCCChhh--ccc
Q 010610 333 LHSIIT-A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA----TNMLESM----IVHPTPTRAE--VSD 400 (506)
Q Consensus 333 ldeIl~-~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA----TqmLeSM----i~~~~PtRAE--v~D 400 (506)
.-.+++ + ++||.|-=| ..+...|+++.++|+||+-. -|--..+ +..-...+++ +.+
T Consensus 96 a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 96 AARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred HHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Confidence 777777 4 789998644 25678889999999998811 1111111 1111122222 455
Q ss_pred HHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHh
Q 010610 401 IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 401 vanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE 439 (506)
.-.+...|+|+++|- |- |. +.+..|+++..
T Consensus 164 a~a~~~AGA~~i~lE-----~v-~~---~~~~~i~~~v~ 193 (254)
T cd06557 164 ALALEEAGAFALVLE-----CV-PA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 556778999999993 22 42 45667766664
No 233
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=66.29 E-value=87 Score=32.28 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=89.3
Q ss_pred CCccccCCCccCCCCCCccCHHHh-HhhHhcCCcEEEE-ccCCC-----HHHHHHHHHHHHhcCCCceEEEecCChhhhh
Q 010610 259 RRHLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAV-SFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIP 331 (506)
Q Consensus 259 ~KgVnlp~~~~~lp~ltekD~~dI-~~al~~gvD~Ial-SfV~s-----aedV~~lr~~l~~~~~~i~IIaKIEt~~ave 331 (506)
|-|-.-|+..+ +..++..| +...+.|+|.|=+ ||+.. ..|-.++-..+... ....+.+-.-+.++++
T Consensus 13 RDG~Q~~~~~~-----s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~ie 86 (287)
T PRK05692 13 RDGLQNEKRFI-----PTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGLE 86 (287)
T ss_pred CccccCcCCCc-----CHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHHH
Confidence 44444454433 34455544 4556789999966 45432 12223333333322 2334433333444443
Q ss_pred hHHHHHHh-CCEEEE--cCCCc----ccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChh---hcccH
Q 010610 332 NLHSIITA-SDGAMV--ARGDL----GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRA---EVSDI 401 (506)
Q Consensus 332 NldeIl~~-sDGImI--aRGDL----gvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRA---Ev~Dv 401 (506)
. -++. .|.|.+ .-.|+ -.....++.....+.+++.++++|..+...-.+ ....|.-+|. .+.++
T Consensus 87 ~---A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 87 A---ALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVADV 160 (287)
T ss_pred H---HHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHHH
Confidence 3 2222 454433 22222 111223355566688999999999987532110 0112222233 33333
Q ss_pred HH-HHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHH
Q 010610 402 AI-AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 402 an-av~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~a 438 (506)
+. +...|+|.|.|. +|.=--.|.++-+++..+.++.
T Consensus 161 ~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 161 AERLFALGCYEISLG-DTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred HHHHHHcCCcEEEec-cccCccCHHHHHHHHHHHHHhC
Confidence 33 667899999995 8888889999999888887543
No 234
>PRK08417 dihydroorotase; Provisional
Probab=66.08 E-value=1.7e+02 Score=31.09 Aligned_cols=128 Identities=9% Similarity=0.099 Sum_probs=69.2
Q ss_pred CCCCCCccCHHHh-HhhHhcCCcEEEE-----ccCCCHHHHHHHHHHHHhc-CCCceEEEecCChhhhhhHHHHHHh-CC
Q 010610 270 TLPSITEKDWDDI-KFGVDNKVDFYAV-----SFVKDAQVVHELKNYLKSC-GADIHVIVKIESADSIPNLHSIITA-SD 341 (506)
Q Consensus 270 ~lp~ltekD~~dI-~~al~~gvD~Ial-----SfV~saedV~~lr~~l~~~-~~~i~IIaKIEt~~aveNldeIl~~-sD 341 (506)
.-|..+..|.+.. +.|+..|+-.|+. |.+.+++.+....+..++. +..+....-....+.+..+++..+. ++
T Consensus 40 ~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~ 119 (386)
T PRK08417 40 KNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGKLSNIATLLKKGAK 119 (386)
T ss_pred CCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCccHHHHHHHHHCCCE
Confidence 3344443443333 4567788877655 3456666776666655432 1122222222344456666666543 55
Q ss_pred EEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhh-----hhc---------CCCCChhhcccHHHHHH
Q 010610 342 GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLES-----MIV---------HPTPTRAEVSDIAIAVR 406 (506)
Q Consensus 342 GImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeS-----Mi~---------~~~PtRAEv~Dvanav~ 406 (506)
++.+. + + .-.....++++.+++.|+|+.+..+--+- |-. ..+|..+|...+...+.
T Consensus 120 ~~k~~-~------~--~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~ 189 (386)
T PRK08417 120 ALELS-S------D--LDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKE 189 (386)
T ss_pred EEECC-C------C--CCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHH
Confidence 55542 1 1 12345677888899999999988754211 111 22577777666665443
No 235
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.01 E-value=82 Score=32.66 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=57.7
Q ss_pred HHhHhhHhcCCcEEEEc-------cCCCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-------fV~saedV~~lr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDGImIaRG 348 (506)
+.+++.+++|+++|++. .....|-.+-++...+..+.+++||+-+= +.++++....--+. +|++|+-+-
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 34568889999999862 23333444444555566677889999874 45666655555554 899999754
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHc-CCcEEEE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVA 380 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~-GkPvivA 380 (506)
..-. ..-+.+...-+ ..|.+. +.|+++.
T Consensus 113 ~y~~-~~~~~l~~yf~---~va~a~~~lPv~iY 141 (309)
T cd00952 113 MWLP-LDVDTAVQFYR---DVAEAVPEMAIAIY 141 (309)
T ss_pred cCCC-CCHHHHHHHHH---HHHHhCCCCcEEEE
Confidence 3210 11123333333 345556 5888875
No 236
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=65.58 E-value=64 Score=33.71 Aligned_cols=118 Identities=20% Similarity=0.209 Sum_probs=64.5
Q ss_pred cCCcEEEEcc----C------CCHHHHHHHHHHHHh----cCCCceEEEecCChhhhhhHHHHHHh-----CCEEEE-cC
Q 010610 288 NKVDFYAVSF----V------KDAQVVHELKNYLKS----CGADIHVIVKIESADSIPNLHSIITA-----SDGAMV-AR 347 (506)
Q Consensus 288 ~gvD~IalSf----V------~saedV~~lr~~l~~----~~~~i~IIaKIEt~~aveNldeIl~~-----sDGImI-aR 347 (506)
..+|+|-+.| + ++++.+.++-+.+++ .+.+++|++|+---...+++.++++. +|||-+ +|
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 3588887765 1 233455454443332 23458999999532222345455443 688874 32
Q ss_pred C----C-----cccCC----CCCcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCccee
Q 010610 348 G----D-----LGAEL----PIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV 412 (506)
Q Consensus 348 G----D-----Lgvel----g~e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~v 412 (506)
- + +.... |....+...+.+-...+.. ..|++...-+- | ..|+..++..|+|+|
T Consensus 239 ~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~---------t---~~da~e~l~aGAd~V 306 (327)
T cd04738 239 TISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS---------S---GEDAYEKIRAGASLV 306 (327)
T ss_pred cccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC---------C---HHHHHHHHHcCCCHH
Confidence 1 0 10001 1122344455555555555 57888665322 2 347888999999999
Q ss_pred Eeecc
Q 010610 413 MLSGE 417 (506)
Q Consensus 413 mLs~E 417 (506)
|+...
T Consensus 307 ~vg~~ 311 (327)
T cd04738 307 QLYTG 311 (327)
T ss_pred hccHH
Confidence 99643
No 237
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=65.55 E-value=11 Score=39.87 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=37.5
Q ss_pred EecCCCCCCHHHHHHHHHhCC--cEEEEeCCCCChHHHHHHHHHHHH
Q 010610 114 CTIGPSTNTREMIWKLAEAGM--NVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 114 ~TiGPss~~~e~i~~li~aGm--~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
+.+|...++.+.+.+|+++|+ |+.=|..+||.-+..+++|+.+|+
T Consensus 90 ~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 90 ISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 345555567799999999966 999999999998888888888875
No 238
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=65.16 E-value=1.8e+02 Score=30.37 Aligned_cols=144 Identities=20% Similarity=0.241 Sum_probs=78.8
Q ss_pred CHHHh-HhhHhcCCcEEEEccC--C-CH--------HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-----C
Q 010610 278 DWDDI-KFGVDNKVDFYAVSFV--K-DA--------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----S 340 (506)
Q Consensus 278 D~~dI-~~al~~gvD~IalSfV--~-sa--------edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----s 340 (506)
++.++ +.+.+.|+|+|-+.+= . +. +.+.++.+.+.+. .+++|++|+- + .+.++.++++. +
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~-p-~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKLS-P-FFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEcC-C-CccCHHHHHHHHHHcCC
Confidence 33444 3445678999876542 1 11 1122332333221 3589999984 3 24456666554 6
Q ss_pred CEEEEc-CCCcccCCC--------------CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHH
Q 010610 341 DGAMVA-RGDLGAELP--------------IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAV 405 (506)
Q Consensus 341 DGImIa-RGDLgvelg--------------~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav 405 (506)
|||.+. |. .+..+. ....+...+.+-+.++....|+|-...+. | ..|+..++
T Consensus 190 dgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~---------s---~~Da~e~l 256 (325)
T cd04739 190 DGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH---------D---AEDVVKYL 256 (325)
T ss_pred CeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC---------C---HHHHHHHH
Confidence 887663 32 111111 11234455555555566678887655333 2 35799999
Q ss_pred HhCcceeEeeccccC-CCCHHHHHHHHHHHHHHHhcccc
Q 010610 406 REGADAVMLSGETAH-GKFPLKAVKVMHTVSLRTEATIT 443 (506)
Q Consensus 406 ~dG~D~vmLs~ETA~-G~yPveaV~~m~~I~~~aE~~~~ 443 (506)
..|+|+|++..---. | | ..+.+|+++.+..+.
T Consensus 257 ~aGA~~Vqv~ta~~~~g--p----~~~~~i~~~L~~~l~ 289 (325)
T cd04739 257 LAGADVVMTTSALLRHG--P----DYIGTLLAGLEAWME 289 (325)
T ss_pred HcCCCeeEEehhhhhcC--c----hHHHHHHHHHHHHHH
Confidence 999999999732222 2 3 255666666665544
No 239
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=65.09 E-value=1.6e+02 Score=29.83 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=88.2
Q ss_pred CccCHHHh-HhhHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCceEEEecCC-hhhhh-----hHHHHHHh-CCEEEE
Q 010610 275 TEKDWDDI-KFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIES-ADSIP-----NLHSIITA-SDGAMV 345 (506)
Q Consensus 275 tekD~~dI-~~al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i~IIaKIEt-~~ave-----NldeIl~~-sDGImI 345 (506)
+..++..| +...+.|+|.|=+.| --++.++..++.+.+..-.+..+.+-.-. ..++. .++..++. .|.|.+
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i 97 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTI 97 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEE
Confidence 34444444 556679999998744 34677877776544332123333332211 11121 23334443 565544
Q ss_pred c--CCCcc----cCCCCCcHHHHHHHHHHHHHHcCCcEEEE-ehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeecc
Q 010610 346 A--RGDLG----AELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGE 417 (506)
Q Consensus 346 a--RGDLg----velg~e~V~~~Qk~II~~c~~~GkPvivA-TqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~E 417 (506)
- -.|+- .-...++.....++.++.++++|..|.+. +.+.+ ..+-+...+.+++. +...|+|.+.| .+
T Consensus 98 ~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~~~~~~~g~~~i~l-~D 172 (273)
T cd07941 98 FGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWLVL-CD 172 (273)
T ss_pred EEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHHHHHHhCCCCEEEE-ec
Confidence 2 22221 11223456666688999999999987663 21211 11212233444444 34569999887 48
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q 010610 418 TAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 418 TA~G~yPveaV~~m~~I~~~a 438 (506)
|.=...|.+.-+.+..+....
T Consensus 173 T~G~~~P~~v~~lv~~l~~~~ 193 (273)
T cd07941 173 TNGGTLPHEIAEIVKEVRERL 193 (273)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 888899998887777776543
No 240
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.03 E-value=21 Score=37.09 Aligned_cols=65 Identities=8% Similarity=0.052 Sum_probs=50.9
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEcC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIaR 347 (506)
..++...+++.|+|.|.+=... +++++++.+.++..+.++ +||---|+ +|+.++++. +|.|-+|.
T Consensus 208 tl~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 4667788899999999999876 889998888877665554 45655555 688888888 89998873
No 241
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=64.88 E-value=93 Score=31.84 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=74.4
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCC-CcH
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI-EEV 359 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~-e~V 359 (506)
-++.+.+.|+|++.+|=.- .|+-.++++.+.+.|-+ .|.-|=-...-+.+..|.+.++|++=.-.=.|+. |. ..+
T Consensus 107 F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~gl~--~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvT-G~~~~~ 182 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHGLD--LIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVT-GSRTEL 182 (259)
T ss_dssp HHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT-E--EEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSS-STTSSC
T ss_pred HHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcCCe--EEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCC-CCcccc
Confidence 4566778999999999876 35567778888776643 3433334455678999999988776543334442 32 356
Q ss_pred HHHHHHHHHHHHHcC-CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 360 PLLQEEIIRTCRSMG-KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 360 ~~~Qk~II~~c~~~G-kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
+.-.+..++..+++. +|+.+-= ..-+++ ++.... .|+|+++.-
T Consensus 183 ~~~l~~~i~~ik~~~~~Pv~vGF---------GI~~~e---~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 183 PDELKEFIKRIKKHTDLPVAVGF---------GISTPE---QAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHHTTSS-EEEES---------SS-SHH---HHHHHH-TTSSEEEES
T ss_pred hHHHHHHHHHHHhhcCcceEEec---------CCCCHH---HHHHHH-ccCCEEEEC
Confidence 666677777777766 8877642 233443 233434 999999974
No 242
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.47 E-value=1.2e+02 Score=30.14 Aligned_cols=148 Identities=8% Similarity=0.022 Sum_probs=86.0
Q ss_pred HHHhHhhHhcCCcEEEEcc------C--CCHHHHHHHHHHHHhcCCCceEEEe--------c------CChhhhhhHHHH
Q 010610 279 WDDIKFGVDNKVDFYAVSF------V--KDAQVVHELKNYLKSCGADIHVIVK--------I------ESADSIPNLHSI 336 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSf------V--~saedV~~lr~~l~~~~~~i~IIaK--------I------Et~~aveNldeI 336 (506)
.+.++.+.+.|+|+|=+.+ . -+..+++++++.+++.|-.+..+.- + +..++++.+...
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLA 95 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHH
Confidence 4567788899999998742 1 2345789999999887765433321 1 122345556555
Q ss_pred HHh-----CCEEEEcCCCcccCCCC----CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHh
Q 010610 337 ITA-----SDGAMVARGDLGAELPI----EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE 407 (506)
Q Consensus 337 l~~-----sDGImIaRGDLgvelg~----e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~d 407 (506)
++. ++.+.+.+|..+..-.. +.+....+++...|.++|..+.+=+. .-...+..+|.+++.++.+.+.
T Consensus 96 i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~--~~~~~~~~~t~~~~~~l~~~~~- 172 (275)
T PRK09856 96 MDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPL--TPYESNVVCNANDVLHALALVP- 172 (275)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC--CCCcccccCCHHHHHHHHHHcC-
Confidence 554 57888877765432221 24556668888999999987664321 0011233556666666666553
Q ss_pred CcceeEeecccc----CCCCHHHHHHH
Q 010610 408 GADAVMLSGETA----HGKFPLKAVKV 430 (506)
Q Consensus 408 G~D~vmLs~ETA----~G~yPveaV~~ 430 (506)
.+.+.+.-+|. .|.-|.+.++.
T Consensus 173 -~~~v~~~~D~~h~~~~~~~~~~~i~~ 198 (275)
T PRK09856 173 -SPRLFSMVDICAPYVQAEPVMSYFDK 198 (275)
T ss_pred -CCcceeEEeecchhcCCCCHHHHHHH
Confidence 23333333443 24445555544
No 243
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=64.41 E-value=74 Score=34.04 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 302 QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 302 edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
+....++++.++. .+.+++-+-+...++-+.+ .+|.+-||-+++.- ..+++.+.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 4566677776654 4567777777666655544 48999999777643 367788888999999988
Q ss_pred hhhhhhhcCCCCChhhcccHHHHHH-hCcceeEee
Q 010610 382 NMLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLS 415 (506)
Q Consensus 382 qmLeSMi~~~~PtRAEv~Dvanav~-dG~D~vmLs 415 (506)
.|. .|-.|+...++.+. .|.+-++|.
T Consensus 233 G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 GLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 653 46678888888776 577566665
No 244
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=64.39 E-value=11 Score=40.83 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=41.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 109 ~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
+-..-+.+|+.-.+.+.++.|+++|+|+.=|..+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 34567778887667799999999999999999999988777777777774
No 245
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=64.13 E-value=1.6e+02 Score=30.04 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=68.9
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+.+|.++++.. |..+........-..|++.+...++ +.| -++.+...++.++.... +..
T Consensus 74 lA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~~-~~~ 137 (290)
T TIGR01138 74 LAMIAALKGYRMKLLM-----------PDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEGK-LLD 137 (290)
T ss_pred HHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCCC-CCC
Confidence 4458999999999873 3333333456677889998776532 123 24555555554432221 111
Q ss_pred CCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
.|.+ . .++.--...-+.++.++++ . .||+.+-+|.|+ +.+..+.|.+.|+++-|
T Consensus 138 -~~~~----~-~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep 198 (290)
T TIGR01138 138 -QFNN----P-DNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQP 198 (290)
T ss_pred -ccCC----c-ccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 1111 0 1111112334567777775 4 788888888775 45555689999999876
No 246
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=64.07 E-value=22 Score=35.67 Aligned_cols=70 Identities=21% Similarity=0.158 Sum_probs=43.0
Q ss_pred HhhHhcCCcEEEEccCCCH---HHHHHHHHHHHhcCCCceEEEe--cCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCC
Q 010610 283 KFGVDNKVDFYAVSFVKDA---QVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVARGDLGAELPI 356 (506)
Q Consensus 283 ~~al~~gvD~IalSfV~sa---edV~~lr~~l~~~~~~i~IIaK--IEt~~aveNldeIl~~-sDGImIaRGDLgvelg~ 356 (506)
+.+.+.|+|+|.+.--... .+.+.++++-+.. ..++||+- |.|.+ ...+.+.. +||||||||=|.-.+.+
T Consensus 155 ~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~e---da~e~l~~GAd~VmvgR~~l~~~~~~ 230 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDIE---SAKEMLKAGADFVSVARAILKGNVEF 230 (231)
T ss_pred HHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCHH---HHHHHHHhCCCeEEEcHhhccCCcCc
Confidence 4567899999988532222 3566666654332 23778883 55543 33344444 89999999877655543
No 247
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=64.03 E-value=2.2e+02 Score=30.94 Aligned_cols=147 Identities=15% Similarity=0.248 Sum_probs=82.2
Q ss_pred CccCHHHhH-hhHhcCCcEEEEcc----C-----------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH
Q 010610 275 TEKDWDDIK-FGVDNKVDFYAVSF----V-----------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (506)
Q Consensus 275 tekD~~dI~-~al~~gvD~IalSf----V-----------~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~ 338 (506)
++.|+.++. ..-+.|+|+|-+.| . ++++-+.++-+.+++. .+++|++||= + -+.++.++++
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia~ 201 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPAR 201 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHHH
Confidence 556666664 44467899988765 2 4556666665555443 3589999996 2 2344666655
Q ss_pred h-----CCEEEEc-C--CCccc--C-------------CC-CC---cHHHHHHHHHHHHHHc------CCcEEEEehhhh
Q 010610 339 A-----SDGAMVA-R--GDLGA--E-------------LP-IE---EVPLLQEEIIRTCRSM------GKAVIVATNMLE 385 (506)
Q Consensus 339 ~-----sDGImIa-R--GDLgv--e-------------lg-~e---~V~~~Qk~II~~c~~~------GkPvivATqmLe 385 (506)
+ +|||..- + .=+++ + .| +. --|.+...+-+.+++. +.|++-.+-+.
T Consensus 202 aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~- 280 (385)
T PLN02495 202 VALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVE- 280 (385)
T ss_pred HHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCC-
Confidence 3 6877652 1 10111 1 00 11 1233444333333332 47776554322
Q ss_pred hhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCC-HHHHHHHHHHHHHHHhccc
Q 010610 386 SMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 386 SMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~y-PveaV~~m~~I~~~aE~~~ 442 (506)
-..|++.+++.|||+|.+. |+.=.+ | +.+.+|+++.+.++
T Consensus 281 -----------s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp----~vi~~i~~~L~~~m 321 (385)
T PLN02495 281 -----------TGGDAAEFILLGADTVQVC--TGVMMHGY----PLVKNLCAELQDFM 321 (385)
T ss_pred -----------CHHHHHHHHHhCCCceeEe--eeeeecCc----HHHHHHHHHHHHHH
Confidence 2458999999999999987 444444 4 34455555555544
No 248
>PRK07695 transcriptional regulator TenI; Provisional
Probab=64.02 E-value=20 Score=34.43 Aligned_cols=34 Identities=0% Similarity=-0.029 Sum_probs=28.4
Q ss_pred HHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 125 MIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 125 ~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
.+.+++++|++.+-|.--|.+.++..+.++.+++
T Consensus 19 ~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 19 AVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445899999999999999999988888877774
No 249
>PRK06381 threonine synthase; Validated
Probab=63.94 E-value=1.4e+02 Score=30.61 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+++.. |.......+...-..|++.+...+ .| -++++...+.+++ +..++.
T Consensus 77 alA~~aa~~G~~~~ivv-----------p~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~~~~~ 138 (319)
T PRK06381 77 SIAYFARLYGLKAVIFI-----------PRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NGIYDA 138 (319)
T ss_pred HHHHHHHHcCCcEEEEE-----------CCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cCcEec
Confidence 45568999999999873 222323345677789999888753 34 4677777776654 222111
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHHHHhh----------CCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAILLSHY----------RPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA~~lS~~----------RP~~pIia~T~ 505 (506)
.. +. ..+....+....-+.++.++++ . .||+.+-+|.|.--++++ .|...|+++.+
T Consensus 139 ~~-~~----~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~ 207 (319)
T PRK06381 139 NP-GS----VNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVST 207 (319)
T ss_pred CC-CC----CCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEee
Confidence 10 00 0000112334455667777776 4 899988899887776664 68888998865
No 250
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=63.57 E-value=13 Score=41.43 Aligned_cols=50 Identities=28% Similarity=0.443 Sum_probs=41.5
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 109 ~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
+=..=+.+|+.-+..|..+.|+++|+|+.=+..+||......++++.||+
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34455678988888999999999999999999999988766677777775
No 251
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=63.42 E-value=41 Score=31.32 Aligned_cols=91 Identities=19% Similarity=0.136 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEE-EeecCCCeeEEeccCCCeEec---CCCEEEEEE--ec-CCCCceEEEeccch--h
Q 010610 147 ASHQKVIDLVKEYNAQSKDNVIAI-MLDTKGPEVRSGDLPQPITLT---SGQEFTFTI--QR-GVGSAECVSVNYDD--F 217 (506)
Q Consensus 147 e~~~~~i~~ir~~~~~~~~~~i~I-l~DL~GPkIRtG~l~~~i~Lk---~G~~v~lt~--~~-~~~~~~~i~v~~~~--l 217 (506)
+....+-..+++..+++. +...+ .-+.++.+++.|.. +.|+ .|+..++++ .. .....+.|++..|- -
T Consensus 49 ~~~~~~e~ri~~L~~~L~-~a~iv~~~~~~~~~V~~Gs~---V~l~~~~~g~~~~~~lVgp~e~d~~~~~IS~~SPlG~A 124 (151)
T TIGR01462 49 EEQGFNEGRIAELEDLLA-NAQVIDDSKLSTDVVGFGST---VTIKDLDTGEEETYTIVGSWEADPKEGKISIDSPLGKA 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHH-hCcccCcccCCCCEEeeCCE---EEEEECCCCCEEEEEEECchhcCccCCeecCCCHHHHH
Confidence 444444555666665554 21111 12334458888865 4443 356444433 21 11233467665541 2
Q ss_pred hhhcCCCCEEEEe--CCeEEEEEEEE
Q 010610 218 VNDVEVGDMLLVD--GGMMSLLVKSK 241 (506)
Q Consensus 218 ~~~v~~Gd~IliD--DG~i~l~V~~~ 241 (506)
+=.-++||.|.+. +|...++|.++
T Consensus 125 LlG~~~Gd~v~v~~p~g~~~~~I~~I 150 (151)
T TIGR01462 125 LIGKKVGDVVEVQTPKGEKEYEILKI 150 (151)
T ss_pred HcCCCCCCEEEEEeCCCcEEEEEEEE
Confidence 2245899999875 88889998876
No 252
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=63.27 E-value=1.2e+02 Score=29.75 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=60.9
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChh---------------------hhhhHHHH
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESAD---------------------SIPNLHSI 336 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~---------------------aveNldeI 336 (506)
+.++++..++.|+|+|.+.- ..-++...++++.+..+.+. |+.-+.... .++-+...
T Consensus 85 ~~~d~~~~~~~G~~~vilg~-~~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (232)
T TIGR03572 85 SLEDAKKLLSLGADKVSINT-AALENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA 162 (232)
T ss_pred CHHHHHHHHHcCCCEEEECh-hHhcCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH
Confidence 56677777788999988762 12233344455554444432 333222111 22222333
Q ss_pred HHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEe
Q 010610 337 ITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVML 414 (506)
Q Consensus 337 l~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmL 414 (506)
.+. +|.+.+.- ...+-..+.. -.+.+-+.++..+.|++.+..+ -+. .|+.. .-..|+|++++
T Consensus 163 ~~~G~d~i~i~~--i~~~g~~~g~--~~~~~~~i~~~~~ipvia~GGi---------~s~---~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 163 EQLGAGEILLNS--IDRDGTMKGY--DLELIKTVSDAVSIPVIALGGA---------GSL---DDLVEVALEAGASAVAA 226 (232)
T ss_pred HHcCCCEEEEeC--CCccCCcCCC--CHHHHHHHHhhCCCCEEEECCC---------CCH---HHHHHHHHHcCCCEEEE
Confidence 222 68787752 2221111111 0222333344568999988643 233 35555 44569999998
Q ss_pred e
Q 010610 415 S 415 (506)
Q Consensus 415 s 415 (506)
.
T Consensus 227 g 227 (232)
T TIGR03572 227 A 227 (232)
T ss_pred e
Confidence 6
No 253
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=63.12 E-value=18 Score=30.71 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=33.6
Q ss_pred chhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeC
Q 010610 215 DDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (506)
Q Consensus 215 ~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~ 257 (506)
.++.+.+++||.|..-.|- .-+|.+++++.+..++..|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi-~G~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGGI-IGTVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCCe-EEEEEEEeCCEEEEEECCCeEEE
Confidence 5788999999999998884 45677899998888876666654
No 254
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=63.02 E-value=73 Score=32.00 Aligned_cols=71 Identities=10% Similarity=0.173 Sum_probs=58.4
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~ 356 (506)
...+..-.+.|+|+|.+= ++...++.++-+++++.|....+.-+=+|+ ++.++.++...|.|++ ++++=|+
T Consensus 74 ~~~i~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll----MsVnPGf 144 (220)
T COG0036 74 DRYIEAFAKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL----MSVNPGF 144 (220)
T ss_pred HHHHHHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE----EeECCCC
Confidence 345666678999999775 568889999999999999999999999997 6779999999999998 3444444
No 255
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=62.91 E-value=99 Score=32.21 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=78.3
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcC---CCcc
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR---GDLG 351 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaR---GDLg 351 (506)
....+...+.|+|+|..+...++ +.++...++..- +.+++|- +.+++|=+.. +| ||+- |.-+
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~-~~l~MAD------~stleEal~a~~~Gad--~I~TTl~gyT~ 145 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHKF-KVPFVCG------ARNLGEALRRISEGAA--MIRTKGEAGTG 145 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc-CCcEEcc------CCCHHHHHHHHHCCCC--EEEecCCCCCC
Confidence 45566667899999999998888 455555555433 6788884 4456655554 33 3321 1111
Q ss_pred c-----------------CCCCC--cHHH-------HHHHHHHHHHHcCCcEE-EEehhhhhhhcCCCCChhhcccHHHH
Q 010610 352 A-----------------ELPIE--EVPL-------LQEEIIRTCRSMGKAVI-VATNMLESMIVHPTPTRAEVSDIAIA 404 (506)
Q Consensus 352 v-----------------elg~e--~V~~-------~Qk~II~~c~~~GkPvi-vATqmLeSMi~~~~PtRAEv~Dvana 404 (506)
- ..++. ..+. -...+-+.++...+||+ +|- ...-|. .++..+
T Consensus 146 ~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAe--------GGI~Tp---ena~~v 214 (283)
T cd04727 146 NVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAA--------GGVATP---ADAALM 214 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEe--------CCCCCH---HHHHHH
Confidence 0 01110 0000 00112223334468987 341 122122 246677
Q ss_pred HHhCcceeEeeccccCCCCHHHHHHHHHHHHHH
Q 010610 405 VREGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (506)
Q Consensus 405 v~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~ 437 (506)
...|+|+++..+.-..-..|.+.++.+......
T Consensus 215 ~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 215 MQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred HHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 889999999986665567899999988776543
No 256
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=62.73 E-value=11 Score=41.99 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=37.9
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 114 CTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 114 ~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
+.+|..-++.+.++.|+++|+++.=++.+||......+.|+.+|+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 477876677899999999999999999999988776667776664
No 257
>PRK06815 hypothetical protein; Provisional
Probab=62.69 E-value=97 Score=32.03 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=69.0
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+..|.|+.+.. |..+.-..+...-..|++.+...+ + ..++.+...+++++-. .+ +.
T Consensus 83 lA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~V~~~~~-----~-~~~~~~~a~~~~~~~~-~~-~~ 143 (317)
T PRK06815 83 VALAAKLAGIPVTVYA-----------PEQASAIKLDAIRALGAEVRLYGG-----D-ALNAELAARRAAEQQG-KV-YI 143 (317)
T ss_pred HHHHHHHhCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECC-----C-HHHHHHHHHHHHHhcC-CE-Ee
Confidence 5678999999998873 222222335566778999888754 2 3466666655544321 11 11
Q ss_pred CCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
..|.+ ....+.....+.++.++++. .||+..-+|.|. +.+..+.|...|+++.+
T Consensus 144 ~~~~~------~~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep 203 (317)
T PRK06815 144 SPYND------PQVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWP 203 (317)
T ss_pred cCCCC------hhhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 11111 11122233346677777754 888888888765 44555668999999876
No 258
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=62.64 E-value=1.4e+02 Score=29.90 Aligned_cols=132 Identities=12% Similarity=0.091 Sum_probs=73.0
Q ss_pred HHhHhhHhcCCcEEEEc-cCCC---HH---HHHHHHHHHHhcCCCceEEEecCChhhh-------hhHHH---HHHh--C
Q 010610 280 DDIKFGVDNKVDFYAVS-FVKD---AQ---VVHELKNYLKSCGADIHVIVKIESADSI-------PNLHS---IITA--S 340 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-fV~s---ae---dV~~lr~~l~~~~~~i~IIaKIEt~~av-------eNlde---Il~~--s 340 (506)
..++.+++.|+|.|.+- +..+ .+ ++.++++.+.+.| +++++.++ ..|+ +.+.. +... +
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g--~~liv~~~-~~Gvh~~~~~~~~~~~~~~~a~~~GA 170 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWG--VPLLAMMY-PRGPHIDDRDPELVAHAARLGAELGA 170 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC--CCEEEEEe-ccCcccccccHHHHHHHHHHHHHHCC
Confidence 45778899999987662 2111 23 3333444444433 34444444 2221 12222 2211 6
Q ss_pred CEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCC---hhh-cccHHHHHHhCcceeEeec
Q 010610 341 DGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPT---RAE-VSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 341 DGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~Pt---RAE-v~Dvanav~dG~D~vmLs~ 416 (506)
|.|-+. + +. . ....+ +.++...+||..+. -++ ..+ ...+..++..|++++....
T Consensus 171 Dyikt~---~----~~-~-~~~l~---~~~~~~~iPVva~G----------Gi~~~~~~~~~~~i~~~~~aGa~Gia~g~ 228 (258)
T TIGR01949 171 DIVKTP---Y----TG-D-IDSFR---DVVKGCPAPVVVAG----------GPKTNSDREFLQMIKDAMEAGAAGVAVGR 228 (258)
T ss_pred CEEecc---C----CC-C-HHHHH---HHHHhCCCcEEEec----------CCCCCCHHHHHHHHHHHHHcCCcEEehhh
Confidence 888864 1 11 1 11222 23334578986653 222 222 3446677889999998887
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q 010610 417 ETAHGKFPLKAVKVMHTVSL 436 (506)
Q Consensus 417 ETA~G~yPveaV~~m~~I~~ 436 (506)
..-.-..|.++++.+.+++.
T Consensus 229 ~i~~~~dp~~~~~~l~~~i~ 248 (258)
T TIGR01949 229 NIFQHDDPVGITKAVCKIVH 248 (258)
T ss_pred HhhcCCCHHHHHHHHHHHHh
Confidence 77777889999998888763
No 259
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.62 E-value=1e+02 Score=31.65 Aligned_cols=105 Identities=14% Similarity=0.219 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 301 AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 301 aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
.+.++.++++.++. .+.+++-+-++..++-+.+ .+|.+-||-+++-- ..+++++.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~~---~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQN-----------FELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHHH---hCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 55677788887654 4678888888777766655 47999998666532 45777778899999998
Q ss_pred ehhhhhhhcCCCCChhhcccHHHHHH-hCcceeEe--eccccCCCCHHHHHH
Q 010610 381 TNMLESMIVHPTPTRAEVSDIAIAVR-EGADAVML--SGETAHGKFPLKAVK 429 (506)
Q Consensus 381 TqmLeSMi~~~~PtRAEv~Dvanav~-dG~D~vmL--s~ETA~G~yPveaV~ 429 (506)
|.|. .+-.|+-..+..+. .|..-++| .|=....+||.+.|.
T Consensus 141 ~G~~--------~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vd 184 (266)
T PRK13398 141 RGMS--------ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLD 184 (266)
T ss_pred CCCC--------CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHH
Confidence 7543 34567777776665 56654444 332144589966655
No 260
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=62.25 E-value=93 Score=31.98 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=58.2
Q ss_pred HHhHhhHhcCCcEEEEc-------cCCCHHHHHHHHHHHHhcCCCceEEEecCC---hhhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-------fV~saedV~~lr~~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDGImIaRG 348 (506)
+.++|.++.|+|+|++. .....|..+-++..++..+.++.||+-+-. .++++......+. +|++|+.+=
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 44578899999998754 223334444445555556677889988754 4555555554444 799999754
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHc-CCcEEEE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVA 380 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~-GkPvivA 380 (506)
.. .+. .=..+....-..|.+. +.|+++-
T Consensus 105 ~y---~~~-~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 105 YY---NKP-NQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred cC---CCC-CHHHHHHHHHHHHHhccCCCEEEE
Confidence 32 111 1133334444456666 7888865
No 261
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=62.04 E-value=1.3e+02 Score=31.70 Aligned_cols=117 Identities=9% Similarity=0.090 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhcccc
Q 010610 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (506)
Q Consensus 364 k~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~ 443 (506)
.-+...|+..|.|+.+. .|..+--..+...-..|++.++. + ...-++.+...+++.+-. . +
T Consensus 61 ~alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~-~-----~~~~~a~~~a~~~~~~~~-~-~ 121 (380)
T TIGR01127 61 QGVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILH-G-----DDYDEAYAFATSLAEEEG-R-V 121 (380)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhcC-C-E
Confidence 34566899999999886 23332233466677889987654 2 234577777777655522 2 1
Q ss_pred CCCCCCCCCcCcCCChHHHHHHHHHHHHhhcC-c-eEEEEcCChHHHH----HHHhhCCCCeEEEEeC
Q 010610 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAI----LLSHYRPSGTIFAFTN 505 (506)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-a-~Iiv~T~sG~tA~----~lS~~RP~~pIia~T~ 505 (506)
+-..|.+ .........-+.++.++++ . .||+..-+|.+.- .+..++|.+.|+++-+
T Consensus 122 ~~~~~~~------~~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~ 183 (380)
T TIGR01127 122 FVHPFDD------EFVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEA 183 (380)
T ss_pred ecCCCCC------hhhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 1111211 0111222334567777776 4 8888888887765 4444579999999876
No 262
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=62.00 E-value=1.6e+02 Score=30.77 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=76.4
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCC--EEEEcC-CCcccCC-
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASD--GAMVAR-GDLGAEL- 354 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sD--GImIaR-GDLgvel- 354 (506)
....+...+.|+|+|..|.+.++ ..++-...+..- +.++++ +..||+|=+...+ .=||+- |.-+..-
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~lrP--ade~~~~~K~~f-~vpfma------d~~~l~EAlrai~~GadmI~Tt~e~gTg~v 149 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVLTP--ADWTFHIDKKKF-KVPFVC------GARDLGEALRRINEGAAMIRTKGEAGTGNI 149 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCCCc--HHHHHHHHHHHc-CCCEEc------cCCCHHHHHHHHHCCCCEEeccccCCCccH
Confidence 44455556889999999999998 344444444322 566776 5556666665421 223321 1100000
Q ss_pred ---------------------CCCcHHHH------HHHHHHH-HHHcCCcEE-EEehhhhhhhcCCCCChhhcccHHHHH
Q 010610 355 ---------------------PIEEVPLL------QEEIIRT-CRSMGKAVI-VATNMLESMIVHPTPTRAEVSDIAIAV 405 (506)
Q Consensus 355 ---------------------g~e~V~~~------Qk~II~~-c~~~GkPvi-vATqmLeSMi~~~~PtRAEv~Dvanav 405 (506)
.-+++... --..++. ++....||+ +|- ...-|. .|++...
T Consensus 150 ~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAi--------GGI~TP---edAa~~m 218 (287)
T TIGR00343 150 VEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAA--------GGVATP---ADAALMM 218 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEecc--------CCCCCH---HHHHHHH
Confidence 00000000 0012222 333457877 221 122233 3577888
Q ss_pred HhCcceeEeeccccCCCCHHHHHHHHHHHHHH
Q 010610 406 REGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (506)
Q Consensus 406 ~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~ 437 (506)
..|+|+++..+.-.....|.+..+.+.+....
T Consensus 219 elGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 219 QLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred HcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 89999999987777777899988877766544
No 263
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=61.82 E-value=1.4e+02 Score=29.14 Aligned_cols=129 Identities=20% Similarity=0.286 Sum_probs=67.2
Q ss_pred cCHHHhHhhHhcCCcEEEEcc--CCCHHHHHHHHHHHHhcCCCceEEEecCC-------------h--hhhhhHHHHHHh
Q 010610 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIES-------------A--DSIPNLHSIITA 339 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSf--V~saedV~~lr~~l~~~~~~i~IIaKIEt-------------~--~aveNldeIl~~ 339 (506)
.+.++++.+++.|+|.|.+.- .++++-+.++.+. .+.+ .|++-|.. . .-++-...+...
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~---~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEE---FGSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHH---hCCC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 467888999999999987764 2334444444433 3332 12222211 0 112222222222
Q ss_pred -CCEEEEcCCCc-ccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecc
Q 010610 340 -SDGAMVARGDL-GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (506)
Q Consensus 340 -sDGImIaRGDL-gvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~E 417 (506)
+|.+++---+- |..-| ..+ +.+-+.++....|++.+..+- +. .|+..+...|+|++++..-
T Consensus 162 G~~~i~~~~~~~~g~~~g-~~~----~~i~~i~~~~~iPvia~GGI~---------~~---~di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 162 GAGSILFTNVDVEGLLEG-VNT----EPVKELVDSVDIPVIASGGVT---------TL---DDLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CCCEEEEEeecCCCCcCC-CCH----HHHHHHHHhCCCCEEEeCCCC---------CH---HHHHHHHHcCCCEEEEEHH
Confidence 57777632111 11111 122 123334555679999876432 23 3455667789999999765
Q ss_pred ccCCCCHHH
Q 010610 418 TAHGKFPLK 426 (506)
Q Consensus 418 TA~G~yPve 426 (506)
-..|.++++
T Consensus 225 ~~~~~~~~~ 233 (241)
T PRK13585 225 LYKGKFTLE 233 (241)
T ss_pred HhcCCcCHH
Confidence 555655533
No 264
>PRK15452 putative protease; Provisional
Probab=61.74 E-value=28 Score=38.29 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=54.7
Q ss_pred ceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCC---CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCC
Q 010610 318 IHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELP---IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTP 393 (506)
Q Consensus 318 i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg---~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~P 393 (506)
+.+.|...+.+++. .-+.. +|.|.+|-..++.-.. +. . .-.++.++.|+++|+.+.++++.+ |
T Consensus 4 peLlapag~~e~l~---aAi~~GADaVY~G~~~~~~R~~~~~f~-~-edl~eav~~ah~~g~kvyvt~n~i--------~ 70 (443)
T PRK15452 4 PELLSPAGTLKNMR---YAFAYGADAVYAGQPRYSLRVRNNEFN-H-ENLALGINEAHALGKKFYVVVNIA--------P 70 (443)
T ss_pred cEEEEECCCHHHHH---HHHHCCCCEEEECCCccchhhhccCCC-H-HHHHHHHHHHHHcCCEEEEEecCc--------C
Confidence 34566666655543 22333 8999999777775321 11 1 235678899999999999997533 4
Q ss_pred ChhhcccHHH----HHHhCcceeEee
Q 010610 394 TRAEVSDIAI----AVREGADAVMLS 415 (506)
Q Consensus 394 tRAEv~Dvan----av~dG~D~vmLs 415 (506)
...|+.+... ....|+|+++.+
T Consensus 71 ~e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 71 HNAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4445444443 345699999986
No 265
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=61.68 E-value=5.7 Score=29.35 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=19.5
Q ss_pred CcEEEEeCC-CCChHHHHHHHHHHH
Q 010610 134 MNVARLNMS-HGDHASHQKVIDLVK 157 (506)
Q Consensus 134 m~v~RiN~S-Hg~~e~~~~~i~~ir 157 (506)
+.|.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 679999998 999998888887764
No 266
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=61.57 E-value=1.2e+02 Score=32.33 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=74.7
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCCCcccCCCCC
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELPIE 357 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRGDLgvelg~e 357 (506)
+..|+..|+|+|-++.=. -.+..++.++ +.+..|-+-.- |++++..+ +|.|.+|+---...=+..
T Consensus 210 vdlAl~~~aDGVHLgq~d--l~~~~aR~ll---g~~~iIG~S~H------s~~e~~~A~~~GaDYI~lGPvf~T~tKp~~ 278 (347)
T PRK02615 210 VDIALAVDADGVHLGQED--LPLAVARQLL---GPEKIIGRSTT------NPEEMAKAIAEGADYIGVGPVFPTPTKPGK 278 (347)
T ss_pred HHHHHHcCCCEEEeChhh--cCHHHHHHhc---CCCCEEEEecC------CHHHHHHHHHcCCCEEEECCCcCCCCCCCC
Confidence 345677899999887421 1144555554 34434444333 44444443 799999875332211110
Q ss_pred cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHH
Q 010610 358 EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (506)
Q Consensus 358 ~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~ 437 (506)
. +.--+.+-..+.....||+....+ +. .++......|+|+|.+.+.-.....|.++++.+.....+
T Consensus 279 ~-~~Gle~l~~~~~~~~iPv~AiGGI----------~~---~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 279 A-PAGLEYLKYAAKEAPIPWFAIGGI----------DK---SNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred C-CCCHHHHHHHHHhCCCCEEEECCC----------CH---HHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 0 111122223344567897754321 11 235567778999999887766667899999888776543
No 267
>PRK06382 threonine dehydratase; Provisional
Probab=61.53 E-value=1.5e+02 Score=31.91 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=69.9
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+..|.++.+.. |..+-...+...-..|++.+ +.++ ..-++.+...+++++- ..++.
T Consensus 88 ~A~aa~~~G~~~~ivm-----------p~~~~~~k~~~~~~~GA~Vv-~~~~-----~~~~a~~~a~~la~~~-~~~~v- 148 (406)
T PRK06382 88 VAYAASINGIDAKIVM-----------PEYTIPQKVNAVEAYGAHVI-LTGR-----DYDEAHRYADKIAMDE-NRTFI- 148 (406)
T ss_pred HHHHHHHcCCCEEEEE-----------cCCCHHHHHHHHHHcCCEEE-EECC-----CHHHHHHHHHHHHHhc-CCEec-
Confidence 5678999999998873 33332233445667899876 4332 3456777666665542 22111
Q ss_pred CCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHh----hCCCCeEEEEeC
Q 010610 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSH----YRPSGTIFAFTN 505 (506)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA~~lS~----~RP~~pIia~T~ 505 (506)
..|.+ ....+....-+.++.++++. .||+..-+|.++--+++ +.|.+.|+++-+
T Consensus 149 ~~~~~------~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~ 208 (406)
T PRK06382 149 EAFND------RWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIES 208 (406)
T ss_pred CccCC------hHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11111 12223334456677888865 88888888887655544 489999999865
No 268
>PRK08005 epimerase; Validated
Probab=61.38 E-value=1.8e+02 Score=28.91 Aligned_cols=139 Identities=8% Similarity=0.048 Sum_probs=86.2
Q ss_pred CCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCccc
Q 010610 273 SITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGA 352 (506)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgv 352 (506)
-+.+.=...|+.-.+.|+|+|.+- ++...+..++-+++++.|.+..|-.+-+| -++.++.++...|.|+| +++
T Consensus 65 LMv~~P~~~i~~~~~~gad~It~H-~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~T--p~~~i~~~l~~vD~Vlv----MsV 137 (210)
T PRK08005 65 LMVSSPQRWLPWLAAIRPGWIFIH-AESVQNPSEILADIRAIGAKAGLALNPAT--PLLPYRYLALQLDALMI----MTS 137 (210)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEc-ccCccCHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHhcCEEEE----EEe
Confidence 333333456666678999988776 46556777788888999999999999998 47778899999999888 445
Q ss_pred CCCCC---cHHHHHHHHHHHHHHcCC-cEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHH
Q 010610 353 ELPIE---EVPLLQEEIIRTCRSMGK-AVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAV 428 (506)
Q Consensus 353 elg~e---~V~~~Qk~II~~c~~~Gk-PvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV 428 (506)
+-|+. -++..-++|-+..+.... .+-+-. .. +. .-+...+..|+|.+++..=--..+-|.+.+
T Consensus 138 ~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDG---------GI-~~---~~i~~l~~aGad~~V~GsaiF~~~d~~~~~ 204 (210)
T PRK08005 138 EPDGRGQQFIAAMCEKVSQSREHFPAAECWADG---------GI-TL---RAARLLAAAGAQHLVIGRALFTTANYDVTL 204 (210)
T ss_pred cCCCccceecHHHHHHHHHHHHhcccCCEEEEC---------CC-CH---HHHHHHHHCCCCEEEEChHhhCCCCHHHHH
Confidence 54443 355555555544332221 222111 10 11 114467888999888752211123466666
Q ss_pred HHH
Q 010610 429 KVM 431 (506)
Q Consensus 429 ~~m 431 (506)
+.|
T Consensus 205 ~~~ 207 (210)
T PRK08005 205 SQF 207 (210)
T ss_pred HHH
Confidence 655
No 269
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=61.25 E-value=72 Score=32.72 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=54.3
Q ss_pred HHhHhhHhcCCcEEEEc------cCCCHHHHHHH-HHHHHhcCCCceEEEecCChhhhhhHHHHHHh-----CCEEEEcC
Q 010610 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHEL-KNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVAR 347 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS------fV~saedV~~l-r~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDGImIaR 347 (506)
+.+++.++.|+|+|.+. +--|.++-.++ +...+..+.++.||+-+-. +.+..-+.++. +|++|+-+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECC
Confidence 34578889999999873 33344444444 4455555667889998742 23333333332 69999876
Q ss_pred CCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 348 GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 348 GDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
--+.- ...+.+...-+.| |.+.+.|+++.
T Consensus 108 P~y~~-~s~~~i~~~f~~v---~~a~~~pvilY 136 (296)
T TIGR03249 108 PYLIN-GEQEGLYAHVEAV---CESTDLGVIVY 136 (296)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhccCCCEEEE
Confidence 44311 1122344433444 44567898865
No 270
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=61.22 E-value=54 Score=32.98 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=52.7
Q ss_pred CCEEEEcCCCcc--cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeec
Q 010610 340 SDGAMVARGDLG--AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (506)
Q Consensus 340 sDGImIaRGDLg--velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ 416 (506)
+||+++. |--| ..+..++-..+.+.+.+.++ -..|+++.+ ..++-.|..+.+. +-..|+|++|+..
T Consensus 32 v~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 32 VDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGV---------GANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred CCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEec---------CCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 7999875 3222 22233343334444444432 246777654 2344456555554 5556999999975
Q ss_pred cccCCCCHHHHHHHHHHHHHHHh
Q 010610 417 ETAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 417 ETA~G~yPveaV~~m~~I~~~aE 439 (506)
=.-...-+-+.++....|+..+.
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCC
Confidence 54444446788899999987754
No 271
>PRK08638 threonine dehydratase; Validated
Probab=60.56 E-value=1.4e+02 Score=31.28 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+.+.. |...--..+...-..|++.++.. |. ..++++.+.+++++- ..++
T Consensus 89 alA~~aa~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~V~~~~-----~~-~~~~~~~a~~~a~~~-g~~~- 149 (333)
T PRK08638 89 GVALSCALLGIDGKVVM-----------PKGAPKSKVAATCGYGAEVVLHG-----DN-FNDTIAKVEEIVEEE-GRTF- 149 (333)
T ss_pred HHHHHHHHcCCCEEEEe-----------CCCCcHHHHHHHHHcCCEEEEEC-----cC-HHHHHHHHHHHHHhc-CCEE-
Confidence 44568999999999873 33222233555667899887652 33 467888887777653 2222
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHHhh----CCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLSHY----RPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-a-~Iiv~T~sG~tA~~lS~~----RP~~pIia~T~ 505 (506)
...|.+ + ...+....-+-++.++++ . .||+..-+|.|..-++++ .|.+.|+++=|
T Consensus 150 ~~~~~~---~---~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep 210 (333)
T PRK08638 150 IPPYDD---P---KVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQS 210 (333)
T ss_pred cCcCCC---c---chhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 111211 1 111222223456666664 4 888888889887777765 89999998854
No 272
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=60.53 E-value=15 Score=39.42 Aligned_cols=92 Identities=21% Similarity=0.191 Sum_probs=62.0
Q ss_pred CHHHhHhhHhcC-CcEEEEccCC-----------------CHHHHHHHHHHHHhcC--CCceEEEecCChhhhhhHHHHH
Q 010610 278 DWDDIKFGVDNK-VDFYAVSFVK-----------------DAQVVHELKNYLKSCG--ADIHVIVKIESADSIPNLHSII 337 (506)
Q Consensus 278 D~~dI~~al~~g-vD~IalSfV~-----------------saedV~~lr~~l~~~~--~~i~IIaKIEt~~aveNldeIl 337 (506)
+.+++..+++.+ +|+|.++--. +..-+.++++++...+ .++.||+ --|+.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 566777777776 9999998874 1223445566665443 3577777 34555555555
Q ss_pred Hh----CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEeh
Q 010610 338 TA----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 338 ~~----sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATq 382 (506)
++ +|++.+||.=|-.- + -...++|+.-.+|++++||
T Consensus 302 kalaLGAd~V~ig~~~l~al-~--------c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 302 KALALGADAVGIGTAALIAL-G--------CIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHcCCCeeeechHHHHhc-c--------hHHHHhcCCCCCCcccccC
Confidence 54 89999997655321 1 1234889999999999998
No 273
>PRK14057 epimerase; Provisional
Probab=60.46 E-value=2.1e+02 Score=29.41 Aligned_cols=142 Identities=10% Similarity=0.105 Sum_probs=89.1
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCC---------CceEEEecCChhhhhhHHHHHHhCCEEEEcCCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA---------DIHVIVKIESADSIPNLHSIITASDGAMVARGD 349 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~---------~i~IIaKIEt~~aveNldeIl~~sDGImIaRGD 349 (506)
...++.-.+.|+|+|.+- ++...++.+.-+++++.|. ...|..+-+| -++.++.++...|.|+|
T Consensus 88 ~~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv---- 160 (254)
T PRK14057 88 WTAAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL---- 160 (254)
T ss_pred HHHHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----
Confidence 345666678899988765 5655677777778888775 4778888888 57789999999999988
Q ss_pred cccCCCCC---cHHHHHHHHHHHH---HHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccC--C
Q 010610 350 LGAELPIE---EVPLLQEEIIRTC---RSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH--G 421 (506)
Q Consensus 350 Lgvelg~e---~V~~~Qk~II~~c---~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~--G 421 (506)
++++-|+. -++..-++|-+.. .++|..+.+.- .... +. .-+...+..|+|.+++. |++ .
T Consensus 161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeV-------DGGI-~~---~ti~~l~~aGad~~V~G--SalF~~ 227 (254)
T PRK14057 161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVI-------DGSL-TQ---DQLPSLIAQGIDRVVSG--SALFRD 227 (254)
T ss_pred EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEE-------ECCC-CH---HHHHHHHHCCCCEEEEC--hHhhCC
Confidence 45555543 3444444444322 23443332221 1110 11 12556788899988775 333 2
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 010610 422 KFPLKAVKVMHTVSLRTEA 440 (506)
Q Consensus 422 ~yPveaV~~m~~I~~~aE~ 440 (506)
..+.++++.|+++...+-.
T Consensus 228 ~d~~~~i~~l~~~~~~~~~ 246 (254)
T PRK14057 228 DRLVENTRSWRAMFKVAGD 246 (254)
T ss_pred CCHHHHHHHHHHHHhhcCC
Confidence 3578888888877655543
No 274
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=60.39 E-value=76 Score=32.33 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=72.6
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEE--EcCCCcccCCCC-
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM--VARGDLGAELPI- 356 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGIm--IaRGDLgvelg~- 356 (506)
+-++.+.+.|+|++.+|=.. .++..++.+.+++.|-+.-.+.- .-.--+.+..|.+.++|++ +++ .|+ -|.
T Consensus 108 ~f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~I~lva--p~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~ 181 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDLIFLVA--PTTTDERLKKIASHASGFVYYVSR--AGV-TGAR 181 (258)
T ss_pred HHHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeC--CCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcc
Confidence 44677889999999999765 47788888888776654333221 2222567888998888765 454 332 222
Q ss_pred CcHHHHHHHHHHHHHHc-CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 357 EEVPLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~-GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
...+......++.++++ ++|+++.. ..=+.. |+..+. .++|++...
T Consensus 182 ~~~~~~~~~~i~~vk~~~~~pv~vGf---------GI~~~e---~v~~~~-~~ADGviVG 228 (258)
T PRK13111 182 SADAADLAELVARLKAHTDLPVAVGF---------GISTPE---QAAAIA-AVADGVIVG 228 (258)
T ss_pred cCCCccHHHHHHHHHhcCCCcEEEEc---------ccCCHH---HHHHHH-HhCCEEEEc
Confidence 13344445566665554 89998864 233443 344444 358998874
No 275
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=60.37 E-value=1.9e+02 Score=29.07 Aligned_cols=191 Identities=14% Similarity=0.086 Sum_probs=105.8
Q ss_pred CccCHHHh-HhhHhcCCcEEEEc-cCCCHHHHHHHHHHHHhcCCCceEEEec-CChhhhhhHHHHHHh-----CCEEEEc
Q 010610 275 TEKDWDDI-KFGVDNKVDFYAVS-FVKDAQVVHELKNYLKSCGADIHVIVKI-ESADSIPNLHSIITA-----SDGAMVA 346 (506)
Q Consensus 275 tekD~~dI-~~al~~gvD~IalS-fV~saedV~~lr~~l~~~~~~i~IIaKI-Et~~aveNldeIl~~-----sDGImIa 346 (506)
+..++..| +...+.|++.|=+- |+.+++|.+.++.+. +...+..+.+-+ -+.+.+ +..++. .|.|-+.
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~-~~~~~~~~~~l~r~~~~~v---~~a~~~~~~~~~~~i~i~ 93 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIA-REVLNAEICGLARAVKKDI---DAAAEALKPAKVDRIHTF 93 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HhCCCCEEEEEccCCHhhH---HHHHHhCCCCCCCEEEEE
Confidence 44454444 55567899998764 455888876665554 333455555554 233343 333333 4544442
Q ss_pred --CCCcc----cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeecccc
Q 010610 347 --RGDLG----AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETA 419 (506)
Q Consensus 347 --RGDLg----velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ETA 419 (506)
-.|.- .....++....-+.+++.|++.|..|.+.. ...++-+...+.+++. +...|+|.+.|. +|.
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~ 166 (268)
T cd07940 94 IATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINIP-DTV 166 (268)
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEEC-CCC
Confidence 11111 011223344556688899999998766431 1223334555555555 455699999995 888
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc-ccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCceEEEEcCCh
Q 010610 420 HGKFPLKAVKVMHTVSLRTEAT-ITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTG 485 (506)
Q Consensus 420 ~G~yPveaV~~m~~I~~~aE~~-~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~Iiv~T~sG 485 (506)
=--+|.+.-+.++.+-+..... +. +.-...++..-++| -...|-+.|+.+|=.|-.|
T Consensus 167 G~~~P~~v~~lv~~l~~~~~~~~i~-------l~~H~Hn~~GlA~A--n~laAi~aG~~~iD~s~~G 224 (268)
T cd07940 167 GYLTPEEFGELIKKLKENVPNIKVP-------ISVHCHNDLGLAVA--NSLAAVEAGARQVECTING 224 (268)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcee-------EEEEecCCcchHHH--HHHHHHHhCCCEEEEEeec
Confidence 8889999988888887544320 11 11112223333333 3445556677555555554
No 276
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=60.36 E-value=64 Score=31.95 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=87.4
Q ss_pred CCCCccCHHHh-HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh--------CCE
Q 010610 272 PSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--------SDG 342 (506)
Q Consensus 272 p~ltekD~~dI-~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--------sDG 342 (506)
|..|+.|.+.+ +.+.++++..|++ ++..+..+++.|. +..+++.+=|==|.|-...+.-+.. +|.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdE 86 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCV----NPSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADE 86 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 67777776655 6788899998887 4778888898884 4567777777777776655443332 343
Q ss_pred EEEcCCCcccCCCC------CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEee
Q 010610 343 AMVARGDLGAELPI------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLS 415 (506)
Q Consensus 343 ImIaRGDLgvelg~------e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs 415 (506)
|= +-+.++. ..+..-.+.|.+.|. |+|+-+ +||. +.-+..|+..... ++..|+|.|=-|
T Consensus 87 iD-----vv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 87 VD-----MVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred EE-----eecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 32 2223332 234444455555564 788665 3432 2234456554444 777899987654
Q ss_pred ccccCCCC----HHHHHHHHHHHHH
Q 010610 416 GETAHGKF----PLKAVKVMHTVSL 436 (506)
Q Consensus 416 ~ETA~G~y----PveaV~~m~~I~~ 436 (506)
.|.. .++.|+.|.+++.
T Consensus 153 ----TGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 153 ----TGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred ----CCCCCCCCCHHHHHHHHHHhc
Confidence 4433 3588888887765
No 277
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=60.35 E-value=1.4e+02 Score=32.24 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=74.2
Q ss_pred hHhcCCcEEEE---ccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh--CCEEEEcCCCccc-------
Q 010610 285 GVDNKVDFYAV---SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLGA------- 352 (506)
Q Consensus 285 al~~gvD~Ial---SfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDGImIaRGDLgv------- 352 (506)
.+..|.|.+.- +...+++|+.++.+.+++.....+|+.|+=.....+.+...++. +|+|.|.=++=|.
T Consensus 179 ~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~ 258 (392)
T cd02808 179 GIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTF 258 (392)
T ss_pred CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccc
Confidence 44556666653 34678888888888887766657888887654344445555544 6999997554322
Q ss_pred --CCCCCcHHHHHHHHHHHHHHc----CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 353 --ELPIEEVPLLQEEIIRTCRSM----GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 353 --elg~e~V~~~Qk~II~~c~~~----GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
+.+++ ......++...+++. ..|++.+..+- --.|++.++..|+|++.+.
T Consensus 259 ~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 259 IDHVGLP-TELGLARAHQALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred cccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 12222 223444555555544 46777765432 2358999999999999874
No 278
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=60.22 E-value=57 Score=31.61 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 304 V~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
++.+++.+.+.|.++.+-+.-+... ++.++.+.-.|.|+.+..+ +..+..+-+.|+++|+|.+.+.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4566777888888877665544443 5567777788988877433 3566778899999999998763
No 279
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=60.18 E-value=49 Score=33.89 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=48.3
Q ss_pred CCccCHHH-hHhhHhcC-CcEEEEccCCCH--HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCC
Q 010610 274 ITEKDWDD-IKFGVDNK-VDFYAVSFVKDA--QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG 348 (506)
Q Consensus 274 ltekD~~d-I~~al~~g-vD~IalSfV~sa--edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRG 348 (506)
|.+.+.++ ++.++..+ +|.|++|=..+. -|...++.+-+.......+++ +--..+|+.++++.+||+.|+-+
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvllg---gGvt~eNv~e~l~~adGviVgS~ 229 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAG---SGVNLENVEELLSIADGVIVATT 229 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEE---CCCCHHHHHHHHhhCCEEEECCC
Confidence 66677655 45566666 999999987765 445555544322222233443 55567899999999999999853
No 280
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=60.16 E-value=42 Score=35.78 Aligned_cols=81 Identities=26% Similarity=0.318 Sum_probs=55.2
Q ss_pred hhhhhHHHHHHh-CCEEEEcCCCcccCCCCC--cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhh--cccHH
Q 010610 328 DSIPNLHSIITA-SDGAMVARGDLGAELPIE--EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE--VSDIA 402 (506)
Q Consensus 328 ~aveNldeIl~~-sDGImIaRGDLgvelg~e--~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAE--v~Dva 402 (506)
..++.+...++. +|+|.+|=-+++.-.... .... .+++++.|+++||-+.++.+++= .+..-| ...+.
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l~ 86 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYLD 86 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHHH
Confidence 344555555555 899999955676655542 2233 67899999999999999876551 222222 34566
Q ss_pred HHHHhCcceeEee
Q 010610 403 IAVREGADAVMLS 415 (506)
Q Consensus 403 nav~dG~D~vmLs 415 (506)
.++..|+|++.++
T Consensus 87 ~l~e~GvDaviv~ 99 (347)
T COG0826 87 RLVELGVDAVIVA 99 (347)
T ss_pred HHHHcCCCEEEEc
Confidence 7889999999996
No 281
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=60.08 E-value=3.1e+02 Score=31.37 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=82.2
Q ss_pred HhhHhcCCcEEEE----c----cCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccC
Q 010610 283 KFGVDNKVDFYAV----S----FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAE 353 (506)
Q Consensus 283 ~~al~~gvD~Ial----S----fV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgve 353 (506)
+.++..|+--++. | -+.+++.+....+..+...-+.....+.-+ ...+.+.+.++. +.|+-+- .|.+
T Consensus 149 ~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~~-s~~aeL~eli~aGA~GfKi~-ed~g-- 224 (569)
T PRK13308 149 DHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGNS-SKPAALIEQVEAGACGLKIH-EDWG-- 224 (569)
T ss_pred HHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCcc-cCHHHHHHHHHCCCCEEeec-CCCC--
Confidence 6788899988875 3 356677787776655543335556666433 334556666544 5566654 2332
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHH
Q 010610 354 LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (506)
Q Consensus 354 lg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~ 430 (506)
.-+....++++.|+++|+||.+.+.-|+.- .-+.+ ..+-..|...-+.=-|.|-|-+--+.+++
T Consensus 225 ----~t~~~i~~aL~~A~~~dv~VaiHadtlne~--------g~~E~-t~~a~~gr~iH~~H~egaggghapd~l~~ 288 (569)
T PRK13308 225 ----AMPAAIDTCLEVADEYDFQVQLHTDTLNES--------GFVED-TLAAIGGRTIHMYHTEGAGGGHAPDIIRV 288 (569)
T ss_pred ----CCHHHHHHHHHHHHhcCCEEEEeCCCcCcc--------hHHHH-HHHHhcCCeEEEEeccCCccCchhHHHHH
Confidence 245678888999999999999998776431 23444 44444577666665677777774455543
No 282
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=60.03 E-value=50 Score=31.98 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
-+..+.+.+.+.+..+.+-+.-++... +|++++++-+|.|+.+-.. +..+..+-+.|+++++|++.+.
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 445566667777777666554333332 5788888889988876322 3567788899999999998763
No 283
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=59.85 E-value=18 Score=38.19 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=40.9
Q ss_pred eEEEecCCCCCCHHHHHHHHHhC--CcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 111 KIVCTIGPSTNTREMIWKLAEAG--MNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 111 KIi~TiGPss~~~e~i~~li~aG--m~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
-..+++|-..++.|.+..|+++| .|+.=+..|||......++++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46777888888899999999999 6999999999988877777777765
No 284
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=59.75 E-value=36 Score=33.37 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=76.2
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCC-
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE- 357 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e- 357 (506)
...++.-.+.|+|+|.+. +++.+++.++-+++++.|.+..|..+-+| .++.++.++...|.|++ ++++-|..
T Consensus 70 ~~~i~~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~~G 142 (201)
T PF00834_consen 70 ERYIEEFAEAGADYITFH-AEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGFGG 142 (201)
T ss_dssp GGHHHHHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTTSS
T ss_pred HHHHHHHHhcCCCEEEEc-ccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCCCc
Confidence 346677788999988776 56778899999999999999999888888 57889999999999988 45555542
Q ss_pred -----cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCC-CCChhhcccHHHHHHhCcceeEee
Q 010610 358 -----EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP-TPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 358 -----~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~-~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
.+..-.+++-+...++|..+.+.. ... ... -+......|+|.+++.
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~v-------DGGI~~~-----~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEV-------DGGINEE-----NIKQLVEAGADIFVAG 194 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEE-------ESSESTT-----THHHHHHHT--EEEES
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEE-------ECCCCHH-----HHHHHHHcCCCEEEEC
Confidence 344444445555555555544321 111 111 2556777899987763
No 285
>PRK09224 threonine dehydratase; Reviewed
Probab=59.68 E-value=1.6e+02 Score=32.82 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+.+-. |..+.-.-+...-..|++.++.. +. .-++.+...+++++ +...+
T Consensus 82 avA~aa~~lGi~~~Ivm-----------P~~tp~~K~~~~r~~GA~Vi~~g-----~~-~~~a~~~a~~l~~~-~g~~~- 142 (504)
T PRK09224 82 GVALSAARLGIKAVIVM-----------PVTTPDIKVDAVRAFGGEVVLHG-----DS-FDEAYAHAIELAEE-EGLTF- 142 (504)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhCCCEEEEEC-----CC-HHHHHHHHHHHHHh-cCCEE-
Confidence 45668999999988762 22222223455667899876652 23 45777777766654 22221
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
-..|.+ ......-..-+.++.++++ . .|++..-+|.++ ..+..++|...|++|-+
T Consensus 143 v~~f~~------~~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~ 204 (504)
T PRK09224 143 IHPFDD------PDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEP 204 (504)
T ss_pred eCCCCC------cHHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 111211 1122222333567777774 4 788887777554 44566799999999875
No 286
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=59.53 E-value=1.9e+02 Score=28.75 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=72.0
Q ss_pred CHHHhHhhHhcCCcEEEEcc--CCCHHHHHHHHHHHHhcCCCceEEEecC---------------------ChhhhhhHH
Q 010610 278 DWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIE---------------------SADSIPNLH 334 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSf--V~saedV~~lr~~l~~~~~~i~IIaKIE---------------------t~~aveNld 334 (506)
+.+|++..++.|+|.|+++- .++++.+.++.+.. +.+ .+++-+. ....++-++
T Consensus 85 s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~---g~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (253)
T PRK02083 85 SVEDARRLLRAGADKVSINSAAVANPELISEAADRF---GSQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAK 160 (253)
T ss_pred CHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc---CCC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHH
Confidence 57788888889999987763 45666666665554 322 1222221 111122223
Q ss_pred HHHHh-CCEEEEcCCC-cccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHH-hCcce
Q 010610 335 SIITA-SDGAMVARGD-LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR-EGADA 411 (506)
Q Consensus 335 eIl~~-sDGImIaRGD-Lgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~-dG~D~ 411 (506)
++.+. +|++++-.-+ =|..-++ ++ ..+-+.++..+.|+|.+..+. ...|+..+.. .|+|+
T Consensus 161 ~~~~~g~~~ii~~~i~~~g~~~g~-d~----~~i~~~~~~~~ipvia~GGv~------------s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 161 EVEELGAGEILLTSMDRDGTKNGY-DL----ELTRAVSDAVNVPVIASGGAG------------NLEHFVEAFTEGGADA 223 (253)
T ss_pred HHHHcCCCEEEEcCCcCCCCCCCc-CH----HHHHHHHhhCCCCEEEECCCC------------CHHHHHHHHHhCCccE
Confidence 33333 6777663211 1122222 22 233334556789999886433 2346767775 59999
Q ss_pred eEeeccccCCCCHHHHH
Q 010610 412 VMLSGETAHGKFPLKAV 428 (506)
Q Consensus 412 vmLs~ETA~G~yPveaV 428 (506)
+|...=-..|.++.+-+
T Consensus 224 vivg~al~~~~~~~~~~ 240 (253)
T PRK02083 224 ALAASIFHFGEITIGEL 240 (253)
T ss_pred EeEhHHHHcCCCCHHHH
Confidence 99864444688877654
No 287
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=58.80 E-value=1.2e+02 Score=31.67 Aligned_cols=139 Identities=18% Similarity=0.180 Sum_probs=77.9
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhC--CEEEEc-CCCcccC--
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITAS--DGAMVA-RGDLGAE-- 353 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~s--DGImIa-RGDLgve-- 353 (506)
....+...+.|+|+|..|-+.++.| ++-...+.. -+.++++ +..|++|=+... -.=||+ -|+.|.-
T Consensus 86 ~~Ea~~L~~~GvDiID~Te~lrpad--~~~~~~K~~-f~~~fma------d~~~l~EAlrai~~GadmI~Ttge~gtg~v 156 (293)
T PRK04180 86 FVEAQILEALGVDYIDESEVLTPAD--EEYHIDKWD-FTVPFVC------GARNLGEALRRIAEGAAMIRTKGEAGTGNV 156 (293)
T ss_pred HHHHHHHHHcCCCEEeccCCCCchH--HHHHHHHHH-cCCCEEc------cCCCHHHHHHHHHCCCCeeeccCCCCCccH
Confidence 3444555688999999999999933 444444432 2677777 556666666552 122333 1221110
Q ss_pred -----------------CCCC--cHHHH------HHHHHHH-HHHcCCcEE-EEehhhhhhhcCCCCChhhcccHHHHHH
Q 010610 354 -----------------LPIE--EVPLL------QEEIIRT-CRSMGKAVI-VATNMLESMIVHPTPTRAEVSDIAIAVR 406 (506)
Q Consensus 354 -----------------lg~e--~V~~~------Qk~II~~-c~~~GkPvi-vATqmLeSMi~~~~PtRAEv~Dvanav~ 406 (506)
.++. .+... --.+++. ++....||+ +|- ...-|. .|+.....
T Consensus 157 ~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~Ae--------GGI~TP---edaa~vme 225 (293)
T PRK04180 157 VEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAA--------GGIATP---ADAALMMQ 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEe--------CCCCCH---HHHHHHHH
Confidence 0110 11100 0122333 334468887 331 122233 34777888
Q ss_pred hCcceeEeeccccCCCCHHHHHHHHHHHHHH
Q 010610 407 EGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (506)
Q Consensus 407 dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~ 437 (506)
.|+|++++.+.-.....|.+.++.+.+....
T Consensus 226 ~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 226 LGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred hCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 9999999987776677899988877765533
No 288
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=58.80 E-value=1.4e+02 Score=28.84 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCCCccCHHHh-HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhH-------HHHHHh-CCE
Q 010610 272 PSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNL-------HSIITA-SDG 342 (506)
Q Consensus 272 p~ltekD~~dI-~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNl-------deIl~~-sDG 342 (506)
|..|+.|.+.+ +.+.+.++|.|+++ +..+..+++.+.. ..+.+-+=+=.+.|-... ++-++. +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 66677776554 56778899999987 6777777777743 334444445444443333 333333 665
Q ss_pred EEEcCCCcccCC-C-CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEee-ccc
Q 010610 343 AMVARGDLGAEL-P-IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLS-GET 418 (506)
Q Consensus 343 ImIaRGDLgvel-g-~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs-~ET 418 (506)
|-+- -++|.-. + ++.+..-..++.+.|. |+|+.+ ++|. +.-+..++...+. ++..|+|.|=-| |=+
T Consensus 86 vdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKTsTG~~ 155 (203)
T cd00959 86 IDMV-INIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKTSTGFG 155 (203)
T ss_pred EEEe-ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 5542 1111100 1 1234444555566664 788754 2222 1113345555554 777899987653 222
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 010610 419 AHGKFPLKAVKVMHTVSL 436 (506)
Q Consensus 419 A~G~yPveaV~~m~~I~~ 436 (506)
+.|-- ++.|+.|.+++.
T Consensus 156 ~~~at-~~~v~~~~~~~~ 172 (203)
T cd00959 156 PGGAT-VEDVKLMKEAVG 172 (203)
T ss_pred CCCCC-HHHHHHHHHHhC
Confidence 23322 477888888776
No 289
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=58.69 E-value=41 Score=34.82 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=44.9
Q ss_pred HhHhhHhcCCcEEEE------------------ccCCCHHHHHHHHHHHHh-cCCCceEEEecCCh-------hhhhhHH
Q 010610 281 DIKFGVDNKVDFYAV------------------SFVKDAQVVHELKNYLKS-CGADIHVIVKIESA-------DSIPNLH 334 (506)
Q Consensus 281 dI~~al~~gvD~Ial------------------SfV~saedV~~lr~~l~~-~~~~i~IIaKIEt~-------~aveNld 334 (506)
.++...+.|+.+|.+ ..+...+.+..++..... .+.++.|+|..|.. ++++...
T Consensus 97 ~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ 176 (285)
T TIGR02320 97 LVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAE 176 (285)
T ss_pred HHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHH
Confidence 355667789999988 334444555566655544 36679999997764 5666666
Q ss_pred HHHHh-CCEEEEc
Q 010610 335 SIITA-SDGAMVA 346 (506)
Q Consensus 335 eIl~~-sDGImIa 346 (506)
.-.++ +|+||+-
T Consensus 177 ay~eAGAD~ifv~ 189 (285)
T TIGR02320 177 AYAEAGADGIMIH 189 (285)
T ss_pred HHHHcCCCEEEec
Confidence 66666 8999984
No 290
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=58.67 E-value=1.8e+02 Score=30.32 Aligned_cols=127 Identities=18% Similarity=0.230 Sum_probs=66.6
Q ss_pred CCCccCHHHh--------HhhHhcCCcEEEEcc-------------CCCH----------------HHHHHHHHHHHhcC
Q 010610 273 SITEKDWDDI--------KFGVDNKVDFYAVSF-------------VKDA----------------QVVHELKNYLKSCG 315 (506)
Q Consensus 273 ~ltekD~~dI--------~~al~~gvD~IalSf-------------V~sa----------------edV~~lr~~l~~~~ 315 (506)
.+|+.|++.+ +.+.+.|+|+|=+.. .+.. +-++.+|+. .|
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~---vG 219 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV---WP 219 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH---cC
Confidence 5777777766 466789999996642 2222 333344433 36
Q ss_pred CCceEEEecCC----------hhhhhhHHHHHHh-CCEEEEcCCCcccC--CCCCcHHHHHHHHHHHHHHcCCcEEEEeh
Q 010610 316 ADIHVIVKIES----------ADSIPNLHSIITA-SDGAMVARGDLGAE--LPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 316 ~~i~IIaKIEt----------~~aveNldeIl~~-sDGImIaRGDLgve--lg~e~V~~~Qk~II~~c~~~GkPvivATq 382 (506)
.+..|..||=- .++++-+..+-+. .|.|=|..|..... .+..... .....-...+...+||+....
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~-~~~~~~~ir~~~~iPVi~~G~ 298 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGY-QVPFAERIRQEAGIPVIAVGL 298 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccc-cHHHHHHHHhhCCCCEEEeCC
Confidence 77788888541 1222222222222 57777766544322 1221100 011111223345899886532
Q ss_pred hhhhhhcCCCCChhhcccHHHHHHhC-cceeEee
Q 010610 383 MLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (506)
Q Consensus 383 mLeSMi~~~~PtRAEv~Dvanav~dG-~D~vmLs 415 (506)
+ -|. .|...++..| +|+|++.
T Consensus 299 i---------~t~---~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 299 I---------TDP---EQAEAILESGRADLVALG 320 (336)
T ss_pred C---------CCH---HHHHHHHHcCCCCeehhh
Confidence 2 223 2455678887 9999874
No 291
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=58.62 E-value=2.8e+02 Score=30.33 Aligned_cols=155 Identities=21% Similarity=0.286 Sum_probs=99.0
Q ss_pred CCCccCHHHhHhhH-hcCCcEEEEccCCCHHHHHHHHHHHH-hcCCCceEEEecCCh-hhhh-hHHHHHHh-CC--EEEE
Q 010610 273 SITEKDWDDIKFGV-DNKVDFYAVSFVKDAQVVHELKNYLK-SCGADIHVIVKIESA-DSIP-NLHSIITA-SD--GAMV 345 (506)
Q Consensus 273 ~ltekD~~dI~~al-~~gvD~IalSfV~saedV~~lr~~l~-~~~~~i~IIaKIEt~-~ave-NldeIl~~-sD--GImI 345 (506)
++|-+|+..|...| +.|+|+|=+.|-.+.+...+..+.+. ..+. .+-+++-.. ..++ .++.++.. .| .+++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~ 97 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIEALLEAGVDRIHIFI 97 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--ccchhhhhhHHhHHhhHHHHHhCCCCEEEEEE
Confidence 34566777776555 58999997777654444444444443 2221 223333221 1222 45566655 56 5888
Q ss_pred cCCCcccCCCC----CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhh---cccHHHHHHh-CcceeEeecc
Q 010610 346 ARGDLGAELPI----EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE---VSDIAIAVRE-GADAVMLSGE 417 (506)
Q Consensus 346 aRGDLgvelg~----e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAE---v~Dvanav~d-G~D~vmLs~E 417 (506)
+-.|+.++.-+ +++...-+..++.++.+|..+.... |.+ +|.| +.+++.++.. |++.+-| .+
T Consensus 98 ~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~---Ed~------~rt~~~~l~~~~~~~~~~ga~~i~l-~D 167 (409)
T COG0119 98 ATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSA---EDA------TRTDPEFLAEVVKAAIEAGADRINL-PD 167 (409)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEe---ecc------ccCCHHHHHHHHHHHHHcCCcEEEE-CC
Confidence 88887776654 4677888899999999998877532 222 2444 4455555544 4999998 58
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh
Q 010610 418 TAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 418 TA~G~yPveaV~~m~~I~~~aE 439 (506)
|-=+-.|-+.-..+..+....-
T Consensus 168 TvG~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 168 TVGVATPNEVADIIEALKANVP 189 (409)
T ss_pred CcCccCHHHHHHHHHHHHHhCC
Confidence 8888899998888888877664
No 292
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=58.55 E-value=76 Score=29.17 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
...++++.|+++|+++++.|- . +..+...++..|+|+|+-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv----------n---~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV----------N---DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC----------C---CHHHHHHHHHCCCCEEec
Confidence 568999999999999999871 1 233567789999999874
No 293
>PRK07476 eutB threonine dehydratase; Provisional
Probab=58.43 E-value=1.6e+02 Score=30.53 Aligned_cols=116 Identities=9% Similarity=0.065 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+.+. .|..+.-.-+...-..|++.+... ...-++++...+++++-. ..+.
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~~~~~g-~~~~ 142 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVG------RSQDDAQAEVERLVREEG-LTMV 142 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC------CCHHHHHHHHHHHHHhcC-CEEe
Confidence 4556899999999886 233322234666778899966553 224577777766654422 1221
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC-c-eEEEEcCChHHHH----HHHhhCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAI----LLSHYRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-a-~Iiv~T~sG~tA~----~lS~~RP~~pIia~T~ 505 (506)
. .|.+ + ...+.....+.++.++++ . .||+.+-+|.++- .+-.+.|...|+++-+
T Consensus 143 ~-~~~n---~---~~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~ 202 (322)
T PRK07476 143 P-PFDD---P---RIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSM 202 (322)
T ss_pred C-CCCC---c---ceeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 1 1111 1 111222344567777775 4 7899888887754 4445688899999865
No 294
>PLN03013 cysteine synthase
Probab=58.42 E-value=1.6e+02 Score=32.38 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=68.0
Q ss_pred HHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCC
Q 010610 367 IRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGA 446 (506)
Q Consensus 367 I~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~ 446 (506)
...|+.+|.|+++. .|..+...-+...-..|++.++.-+. .| | ..+++...+++++....++..
T Consensus 191 A~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~-~-~~a~~~A~ela~~~~g~~~~~- 254 (429)
T PLN03013 191 AFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG-M-TGAVQKAEEILKNTPDAYMLQ- 254 (429)
T ss_pred HHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC-h-HHHHHHHHHHHhhcCCeEeCC-
Confidence 34799999999886 34444444466677789998776321 11 2 245666666554422222211
Q ss_pred CCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 447 MPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 447 ~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
.|.+ +..+..-..--+.++.++++ . .||+..-+|.|. +.+-.++|.+.|+++-|
T Consensus 255 qy~N-----p~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep 315 (429)
T PLN03013 255 QFDN-----PANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEP 315 (429)
T ss_pred CCCC-----HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEe
Confidence 1111 00111112223456777764 5 888888888655 55556689999999876
No 295
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=58.13 E-value=55 Score=32.26 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 360 PLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 360 ~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
..+...+++.++++|++|++.|- + + ..+...++..|+|+|+-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv------n----~---~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV------N----D---PEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC------C----C---HHHHHHHHHcCCCEEEc
Confidence 34567899999999999999871 1 1 23466788899999874
No 296
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=58.10 E-value=54 Score=35.27 Aligned_cols=92 Identities=18% Similarity=0.275 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHH---HHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc--
Q 010610 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHS---IITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM-- 373 (506)
Q Consensus 300 saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNlde---Il~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~-- 373 (506)
+-++++++++.. +.+|++| ++.+.++ ..+. +|+|.|+--- |-.+. ..+.....+.+...+.
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~--~~~a~~~~L~ei~~av~~ 282 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLD--GGPAAFDSLQEVAEAVDK 282 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCC--CCCcHHHHHHHHHHHhCC
Confidence 336777777654 4688888 3444333 3333 7999887321 33321 1111111222222233
Q ss_pred CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeec
Q 010610 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (506)
Q Consensus 374 GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ 416 (506)
.+|+|.-..+- .-.|+..++..|+|++|+..
T Consensus 283 ~i~vi~dGGIr------------~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 283 RVPIVFDSGVR------------RGQHVFKALASGADLVALGR 313 (367)
T ss_pred CCcEEeeCCcC------------CHHHHHHHHHcCCCEEEEcH
Confidence 37888754322 24689999999999999853
No 297
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=57.73 E-value=86 Score=31.93 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=49.5
Q ss_pred hHhhHhcCCcEEEEc------cCCCHHHHHHHH-HHHHhcCCCceEEEecCC---hhhhhhHHHHHHh-CCEEEEcCCCc
Q 010610 282 IKFGVDNKVDFYAVS------FVKDAQVVHELK-NYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARGDL 350 (506)
Q Consensus 282 I~~al~~gvD~IalS------fV~saedV~~lr-~~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDGImIaRGDL 350 (506)
++|.++.|+|+|++. +--|.++-.++- ...+..+ . ||+.+-+ .++++-...--+. +|++|+.+-.+
T Consensus 26 i~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y 102 (279)
T cd00953 26 CENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNLEESIELARAAKSFGIYAIASLPPYY 102 (279)
T ss_pred HHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 467889999999772 333444444443 3444433 2 6777653 3444444333333 79999865443
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 351 GAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 351 gvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
-.....+.+...-+.|.+ ..|+++.
T Consensus 103 ~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 103 FPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred CCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 211112334444444444 7888865
No 298
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=57.71 E-value=34 Score=36.30 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=61.7
Q ss_pred CHHHhHhhHhcCCcEEEEccC---------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEE
Q 010610 278 DWDDIKFGVDNKVDFYAVSFV---------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAM 344 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV---------~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGIm 344 (506)
+.+|.+.+.+.|+|+|.+|.- .+.+-+.++++.+...+.++.||+ -.||.|=.+|+++ +|+++
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~----~GGIr~G~Dv~kalaLGA~aV~ 298 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYV----DGGVRRGTDVLKALCLGAKAVG 298 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEE----eCCCCCHHHHHHHHHcCCCEEE
Confidence 367888899999999999863 334446666666555555677776 3466666666665 89999
Q ss_pred EcCCCcccCC--CCC----cHHHHHHHHHHHHHHcCCc
Q 010610 345 VARGDLGAEL--PIE----EVPLLQEEIIRTCRSMGKA 376 (506)
Q Consensus 345 IaRGDLgvel--g~e----~V~~~Qk~II~~c~~~GkP 376 (506)
|||.=|-.-. |.+ -+..+++++-......|..
T Consensus 299 iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 299 LGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred ECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987654322 333 2444555666666666643
No 299
>PLN02535 glycolate oxidase
Probab=57.69 E-value=23 Score=37.94 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=44.8
Q ss_pred CHHHhHhhHhcCCcEEEEccCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~------saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaR 347 (506)
+.+|.+.+.+.|+|+|.+|... ...-+..+.+..+..+.++.||+ -.||.|-.+|+++ +|+++|||
T Consensus 233 ~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~----dGGIr~g~Dv~KALalGA~aV~vGr 308 (364)
T PLN02535 233 TREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL----DGGVRRGTDVFKALALGAQAVLVGR 308 (364)
T ss_pred CHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe----eCCCCCHHHHHHHHHcCCCEEEECH
Confidence 4566788899999999998321 11123334443333344577775 3566667777665 89999998
Q ss_pred CCcc
Q 010610 348 GDLG 351 (506)
Q Consensus 348 GDLg 351 (506)
.=|-
T Consensus 309 ~~l~ 312 (364)
T PLN02535 309 PVIY 312 (364)
T ss_pred HHHh
Confidence 7663
No 300
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=57.64 E-value=34 Score=36.79 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=58.3
Q ss_pred HHHhHhhHhcCCcEEEEccCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG 348 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~------saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRG 348 (506)
.+|.+.+.+.|+|+|.+|-.- .+..+..+.+.....+.++.||+- .||.+-.+|+++ +|++||||-
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcHH
Confidence 678888999999999888632 223455555554444556778773 355555555554 899999997
Q ss_pred Cccc--CCCCC---c-HHHHHHHHHHHHHHcCCcE
Q 010610 349 DLGA--ELPIE---E-VPLLQEEIIRTCRSMGKAV 377 (506)
Q Consensus 349 DLgv--elg~e---~-V~~~Qk~II~~c~~~GkPv 377 (506)
=|-. .-|.+ + +...+.++-......|..-
T Consensus 315 ~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~ 349 (367)
T TIGR02708 315 VIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQT 349 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4422 11322 2 3345556656666666543
No 301
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=57.50 E-value=79 Score=32.38 Aligned_cols=115 Identities=17% Similarity=0.303 Sum_probs=68.5
Q ss_pred CHHHhHhhHhcCCcEEEE-ccCC-----------CHHHHHHHHHHHHhcCCCceEEEecCChhhh----hhHHHHHHh--
Q 010610 278 DWDDIKFGVDNKVDFYAV-SFVK-----------DAQVVHELKNYLKSCGADIHVIVKIESADSI----PNLHSIITA-- 339 (506)
Q Consensus 278 D~~dI~~al~~gvD~Ial-SfV~-----------saedV~~lr~~l~~~~~~i~IIaKIEt~~av----eNldeIl~~-- 339 (506)
-.+.+..|...|+|||-+ .|+. ++.++.+.|+.| +.+++|++-|--+.+. ..++|++..
T Consensus 91 ~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l---~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~ 167 (257)
T TIGR00259 91 AVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL---GSEVKILADIVVKHAVHLGNRDLESIALDTV 167 (257)
T ss_pred CHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc---CCCcEEEeceeecccCcCCCCCHHHHHHHHH
Confidence 355777888899999988 5542 344555555554 5688998866544443 467777662
Q ss_pred ----CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 340 ----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 340 ----sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
+||++|.=--=|.+..++.+..+- + ..-..|+++++.+ .|.- +..++.. +|++..+
T Consensus 168 ~~~~aDavivtG~~TG~~~d~~~l~~vr----~--~~~~~PvllggGv--------t~eN-----v~e~l~~-adGviVg 227 (257)
T TIGR00259 168 ERGLADAVILSGKTTGTEVDLELLKLAK----E--TVKDTPVLAGSGV--------NLEN-----VEELLSI-ADGVIVA 227 (257)
T ss_pred HhcCCCEEEECcCCCCCCCCHHHHHHHH----h--ccCCCeEEEECCC--------CHHH-----HHHHHhh-CCEEEEC
Confidence 799999743344443333332111 1 1235799998642 2322 4444443 8887774
No 302
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=57.48 E-value=77 Score=34.60 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=80.6
Q ss_pred EEEEEEecCCCCceEEEe--ccchhhhhcCCCCEEEEe--------CCeEEEEEEEEeCCeE----------EEEEeeCc
Q 010610 195 EFTFTIQRGVGSAECVSV--NYDDFVNDVEVGDMLLVD--------GGMMSLLVKSKTEDSV----------KCEVVDGG 254 (506)
Q Consensus 195 ~v~lt~~~~~~~~~~i~v--~~~~l~~~v~~Gd~IliD--------DG~i~l~V~~~~~~~v----------~~~V~~gG 254 (506)
.++|+..+....-.++.. .+..+.-.++.|+.|++- .|..+|.|.++++..+ +-+...-|
T Consensus 36 H~YFtLkD~~a~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~~G~G~l~~~~~~lk~~L~~eG 115 (432)
T TIGR00237 36 HWYFTLKDENAQVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQPAGEGLLQLAYEQLKEKLAAEG 115 (432)
T ss_pred eEEEEEEcCCcEEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEeccCChHHHHHHHHHHHHHHHHCC
Confidence 677777653322222222 223444457889998764 6888888888775442 11222334
Q ss_pred EeCCCCccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEE---EecCChhhhh
Q 010610 255 ELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVI---VKIESADSIP 331 (506)
Q Consensus 255 ~L~s~KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~II---aKIEt~~ave 331 (506)
.. =|..+.++|.++.+ |++==-.++.-++.+...+........++ +.+.-.+|..
T Consensus 116 lf-------d~~~k~~lP~~p~~---------------i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~ 173 (432)
T TIGR00237 116 LF-------DQEYKKPLPHFPKR---------------VGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQ 173 (432)
T ss_pred CC-------CchhcCCCCCCCCE---------------EEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHH
Confidence 43 34444455544321 11111134455555555555444322222 1333333322
Q ss_pred hHHHHHH------hCCEEEEcCCCcccCCCCCcH-HHHHHHHHHHHHHcCCcEEEEe
Q 010610 332 NLHSIIT------ASDGAMVARGDLGAELPIEEV-PLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 332 NldeIl~------~sDGImIaRGDLgvelg~e~V-~~~Qk~II~~c~~~GkPvivAT 381 (506)
.+-.=++ ..|.|+|+||-=+.| ++ +.=...++++.-+...|||.+-
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGGGs~e----DL~~Fn~e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGGGSLE----DLWSFNDEKVARAIFLSKIPIISAV 226 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCCCCHH----HhhhcCcHHHHHHHHcCCCCEEEec
Confidence 2111111 159999999942222 21 2223466777788899999873
No 303
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.44 E-value=55 Score=32.76 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=73.3
Q ss_pred cEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCC--------CcccCCCCC-
Q 010610 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG--------DLGAELPIE- 357 (506)
Q Consensus 291 D~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRG--------DLgvelg~e- 357 (506)
-.|.+=...++++...+-+.|-+.|-. .+=.-.-|+.+++.+.++.+. .+.++||-| +..++.|.+
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~~gGi~-~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACYDGGAR-VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF 94 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCC-EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE
Confidence 345555567888888877777665543 233345677888888877633 345777765 222222221
Q ss_pred -cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCC
Q 010610 358 -EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 421 (506)
Q Consensus 358 -~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G 421 (506)
--|..-..+++.|+++|.|++=- -.-.+++..|...|+|.+=|=--.+.|
T Consensus 95 iVsP~~~~~v~~~~~~~~i~~iPG--------------~~TpsEi~~A~~~Ga~~vKlFPA~~~G 145 (222)
T PRK07114 95 IVTPLFNPDIAKVCNRRKVPYSPG--------------CGSLSEIGYAEELGCEIVKLFPGSVYG 145 (222)
T ss_pred EECCCCCHHHHHHHHHcCCCEeCC--------------CCCHHHHHHHHHCCCCEEEECcccccC
Confidence 12334578999999999998832 122345889999999999885322444
No 304
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=57.34 E-value=1.6e+02 Score=31.93 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=70.3
Q ss_pred cCCCCCCccCHHH-hHhhHhcCCcEEEEccCC-CHHHHHHHHHHHHhcCCCceEEEecCChh-hhhhHHHHHHh-CCEEE
Q 010610 269 ATLPSITEKDWDD-IKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESAD-SIPNLHSIITA-SDGAM 344 (506)
Q Consensus 269 ~~lp~ltekD~~d-I~~al~~gvD~IalSfV~-saedV~~lr~~l~~~~~~i~IIaKIEt~~-aveNldeIl~~-sDGIm 344 (506)
+-+..++..+... ++.+++.|+|+|-+.+-. +.+..+.++++.+..+ ...++.-+.... +-..++..++. +|+|.
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~-~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~ 86 (430)
T PRK07028 8 VALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP-DHTIVADMKTMDTGAIEVEMAAKAGADIVC 86 (430)
T ss_pred EEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC-CCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence 3334444444433 455688999999764311 2445566666655433 334543322211 22356666655 79988
Q ss_pred E-cCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 345 V-ARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 345 I-aRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
+ +-.| . ...+++++.|+++|.++++-. + ..+|. +..+..+...|+|.+.+.
T Consensus 87 v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~------~--s~~t~--~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 87 ILGLAD--------D--STIEDAVRAARKYGVRLMADL------I--NVPDP--VKRAVELEELGVDYINVH 138 (430)
T ss_pred EecCCC--------h--HHHHHHHHHHHHcCCEEEEEe------c--CCCCH--HHHHHHHHhcCCCEEEEE
Confidence 6 3211 1 113678999999999998721 0 11222 223556777899999765
No 305
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=57.23 E-value=32 Score=31.80 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcC
Q 010610 123 REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 164 (506)
Q Consensus 123 ~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~ 164 (506)
.+.+++++++|++.+-|....++..++.+.++.+++.....+
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~ 56 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYG 56 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 577999999999999888888888888888888887655444
No 306
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=57.11 E-value=2e+02 Score=31.02 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=68.5
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+.+|.++.+.. |..+.-.-+...-..|++.+...+.. .-..+-..++...+++++.+..++ .
T Consensus 77 lA~~a~~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~~~~~-~ 143 (454)
T TIGR01137 77 LALVAAIKGYKCIIVL-----------PEKMSNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIPGAHI-L 143 (454)
T ss_pred HHHHHHHcCCeEEEEe-----------CCCcCHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCCCcEe-c
Confidence 4458999999998862 33332234566778899987764211 111222234445555544322211 1
Q ss_pred CCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHHHHh----hCCCCeEEEEeC
Q 010610 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAILLSH----YRPSGTIFAFTN 505 (506)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA~~lS~----~RP~~pIia~T~ 505 (506)
..|.+ ..++..-....+.++.++++ . .||+..-+|.|+--+++ ++|.+.|+++.+
T Consensus 144 ~~~~~-----~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~ 205 (454)
T TIGR01137 144 DQYNN-----PSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADP 205 (454)
T ss_pred ccCCC-----hhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEec
Confidence 11111 11111112334567777775 4 89998888887754444 679999999876
No 307
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=57.09 E-value=2e+02 Score=28.25 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=69.0
Q ss_pred CHHHhHhhHhcCCcEEEEcc--CCCHHHHHHHHHHHHhcCCC-ce--EEEec---------------CC-hhhhhhHHHH
Q 010610 278 DWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGAD-IH--VIVKI---------------ES-ADSIPNLHSI 336 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSf--V~saedV~~lr~~l~~~~~~-i~--IIaKI---------------Et-~~aveNldeI 336 (506)
+.+|++..++.|+|.|.+.. .++++.+.++.+.+ +.+ +. +=+|+ ++ .+.++-+.++
T Consensus 82 s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~---~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 158 (243)
T cd04731 82 SLEDARRLLRAGADKVSINSAAVENPELIREIAKRF---GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEV 158 (243)
T ss_pred CHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHc---CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHH
Confidence 45677777778999877753 45666666655444 322 11 11221 11 1122222333
Q ss_pred HHh-CCEEEEc-CCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHh-CcceeE
Q 010610 337 ITA-SDGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE-GADAVM 413 (506)
Q Consensus 337 l~~-sDGImIa-RGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~d-G~D~vm 413 (506)
.+. +|.+.+. +..=+..-|+ .+.. +-+.++..+.|++.+..+- +. .|+..+... |+|++|
T Consensus 159 ~~~G~d~i~v~~i~~~g~~~g~-~~~~----i~~i~~~~~~pvia~GGi~---------~~---~di~~~l~~~g~dgv~ 221 (243)
T cd04731 159 EELGAGEILLTSMDRDGTKKGY-DLEL----IRAVSSAVNIPVIASGGAG---------KP---EHFVEAFEEGGADAAL 221 (243)
T ss_pred HHCCCCEEEEeccCCCCCCCCC-CHHH----HHHHHhhCCCCEEEeCCCC---------CH---HHHHHHHHhCCCCEEE
Confidence 332 6888873 1111111111 2211 2222345689999875432 22 346666665 999999
Q ss_pred eeccccCCCCHHHHH
Q 010610 414 LSGETAHGKFPLKAV 428 (506)
Q Consensus 414 Ls~ETA~G~yPveaV 428 (506)
+..--..|.+..+.+
T Consensus 222 vg~al~~~~~~~~~~ 236 (243)
T cd04731 222 AASIFHFGEYTIAEL 236 (243)
T ss_pred EeHHHHcCCCCHHHH
Confidence 986666788876543
No 308
>PRK10717 cysteine synthase A; Provisional
Probab=56.96 E-value=2.1e+02 Score=29.64 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=67.4
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+.+|.++.+.. |....-.-+...-..|++.+...+. . ...|-..++...+++++.+......
T Consensus 79 lA~~a~~~G~~~~vv~-----------p~~~~~~k~~~~~~~GA~V~~~~~~-~-~~~~~~~~~~a~~~a~~~~~~~~~~ 145 (330)
T PRK10717 79 LALVAAARGYKTVIVM-----------PETQSQEKKDLLRALGAELVLVPAA-P-YANPNNYVKGAGRLAEELVASEPNG 145 (330)
T ss_pred HHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHHcCCEEEEeCCc-c-cccccchHHHHHHHHHHHHhhCCCC
Confidence 4458999999998873 2222222356677889998776421 1 1111223444455555443211111
Q ss_pred CCCCCCCcCcCCC--hHHHHHHHHHHHHhhcC--c-eEEEEcCChHHHH----HHHhhCCCCeEEEEeC
Q 010610 446 AMPPNLGQAFKNH--MSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAI----LLSHYRPSGTIFAFTN 505 (506)
Q Consensus 446 ~~~~~~~~~~~~~--~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA~----~lS~~RP~~pIia~T~ 505 (506)
..+.+ + +.+. ...-...-+.++.++++ . .||+..-+|.++- .+..++|.+.|+++-+
T Consensus 146 ~~~~~--~-~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep 211 (330)
T PRK10717 146 AIWAN--Q-FDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADP 211 (330)
T ss_pred eEecC--C-CCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 11111 0 1111 11112334667788886 5 8888887887655 4445679999999865
No 309
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=56.74 E-value=36 Score=38.27 Aligned_cols=118 Identities=14% Similarity=0.236 Sum_probs=74.3
Q ss_pred CCcEEEEccCCCHHHHHHHHHHHHh-------cCCCceEEEecCChhhhhhHHHHHHhC-C---EEEEcC----------
Q 010610 289 KVDFYAVSFVKDAQVVHELKNYLKS-------CGADIHVIVKIESADSIPNLHSIITAS-D---GAMVAR---------- 347 (506)
Q Consensus 289 gvD~IalSfV~saedV~~lr~~l~~-------~~~~i~IIaKIEt~~aveNldeIl~~s-D---GImIaR---------- 347 (506)
+--|+.+|.++++++++--.+.+.. ....+++.+.|||..|.-|++||+-+. | |+=.||
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 4458899999999999877665532 234689999999999999999999862 2 443333
Q ss_pred ------------CCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCCh-------hhcccH----HHH
Q 010610 348 ------------GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR-------AEVSDI----AIA 404 (506)
Q Consensus 348 ------------GDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtR-------AEv~Dv----ana 404 (506)
..++++-| -+....+..++.|++.|...+- .|- .-.|.+ ..+..| -.-
T Consensus 283 ~~~~~~~vlPdR~~v~m~~p--fm~aY~~llv~tch~Rga~a~g--Gma-----a~ip~~~d~~~~~~a~~~v~~dK~rE 353 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQP--FMRAYEDLLVRTCHRRGAHAMG--GMA-----AFIPIGKDPWANPDAMAKVRADKERE 353 (526)
T ss_dssp TCCGCCBB---GGGGGCGSH--HHHHHHHHHHHHHHHTT-HHHT--TCT-----TTSEEEEEEHHBTTCHHHHHHHTHHH
T ss_pred hhhCCCccccccccccccCH--HHHHHHHHHHHHHhhcCCcccc--CCc-----cccCCCCChhhhHHHHHHHHHHHHHH
Confidence 33333333 3778889999999999976531 111 113333 112222 236
Q ss_pred HHhCcceeEee
Q 010610 405 VREGADAVMLS 415 (506)
Q Consensus 405 v~dG~D~vmLs 415 (506)
+.+|+||-+..
T Consensus 354 ~~~G~dg~WVa 364 (526)
T PF01274_consen 354 AKAGFDGAWVA 364 (526)
T ss_dssp HHTT-SEEEES
T ss_pred HhcCCCccccc
Confidence 78999999884
No 310
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=56.64 E-value=33 Score=35.08 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=46.0
Q ss_pred cCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhhHHHHHHh-CCEEEEcC
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDGImIaR 347 (506)
.+.++++.+++.|+|+|.+.-+. +++++++.+.+. .++++.| --| .+|+.++++. +|+|-++.
T Consensus 190 ~s~eea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~---~~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 190 ETLEQLKEALEAGADIIMLDNMS-PEELREAVALLK---GRVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CCHHHHHHHHHcCCCEEEECCcC-HHHHHHHHHHcC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 45778888999999999999874 777777776653 2344333 334 4789999888 89998874
No 311
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=56.51 E-value=35 Score=35.12 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=41.7
Q ss_pred HHHhHhhHhcCCcEEEEccCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG 348 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~------saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRG 348 (506)
.++.+.+.+.|+|+|.++--. .......+.+..+..+.++.||+- .|+.+-.++++. +|+||+||.
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~ 258 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD----GGIRRGTDVLKALALGADAVLIGRP 258 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 466788889999999985421 122333344333333345778772 455555555554 899999985
Q ss_pred Cc
Q 010610 349 DL 350 (506)
Q Consensus 349 DL 350 (506)
-|
T Consensus 259 ~l 260 (299)
T cd02809 259 FL 260 (299)
T ss_pred HH
Confidence 44
No 312
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=56.47 E-value=1.5e+02 Score=28.99 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=66.7
Q ss_pred HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHH
Q 010610 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPL 361 (506)
Q Consensus 283 ~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~ 361 (506)
+.+++.|+..+-+.+ +++...+.++.+.++.+..+ +.-.=|.--.+.++..++. +|+++. | .
T Consensus 29 ~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~~--~iGaGTV~~~~~~~~a~~aGA~fivs---------p-----~ 91 (206)
T PRK09140 29 GALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDRA--LIGAGTVLSPEQVDRLADAGGRLIVT---------P-----N 91 (206)
T ss_pred HHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCCc--EEeEEecCCHHHHHHHHHcCCCEEEC---------C-----C
Confidence 456778888888885 77777777777766554332 2222233334455666655 677774 2 2
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
.-..+++.|+..|.+++..+. .| +++..+...|+|.+.+
T Consensus 92 ~~~~v~~~~~~~~~~~~~G~~---------t~-----~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 92 TDPEVIRRAVALGMVVMPGVA---------TP-----TEAFAALRAGAQALKL 130 (206)
T ss_pred CCHHHHHHHHHCCCcEEcccC---------CH-----HHHHHHHHcCCCEEEE
Confidence 234678899999999987642 22 3478899999999987
No 313
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=56.43 E-value=47 Score=33.24 Aligned_cols=87 Identities=16% Similarity=0.028 Sum_probs=52.7
Q ss_pred HHHhHhhHhcCCcEEEEccCCCH-----HHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHh--CCEEEEcCCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDA-----QVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA--SDGAMVARGD 349 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~sa-----edV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~--sDGImIaRGD 349 (506)
.+.++...+.|+|+|.++-+.+- -+...++++.+.. ++++|+ -|=+++-+ .+++.. +||+|+|+..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di---~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHF---YEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHH---HHHHHcCCcceeeEhHHH
Confidence 34456677899999988766541 1234444444332 456665 23333333 344432 7999999887
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHcCCcE
Q 010610 350 LGAELPIEEVPLLQEEIIRTCRSMGKAV 377 (506)
Q Consensus 350 Lgvelg~e~V~~~Qk~II~~c~~~GkPv 377 (506)
..-++++ +++.+.|+++|.|+
T Consensus 233 ~~~~~~~-------~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 233 HYREITI-------GEVKEYLAERGIPV 253 (254)
T ss_pred hCCCCCH-------HHHHHHHHHCCCcc
Confidence 6556553 35677788888875
No 314
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.38 E-value=1.7e+02 Score=30.32 Aligned_cols=117 Identities=20% Similarity=0.328 Sum_probs=73.8
Q ss_pred CCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcE-EEEehhh---hhhhcC
Q 010610 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAV-IVATNML---ESMIVH 390 (506)
Q Consensus 316 ~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPv-ivATqmL---eSMi~~ 390 (506)
.+++|...+....-++.+.+-++. .+.||+. |-.+|+++=...-+++++.|+.+|.+| .=-..+- +....+
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~ 148 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSE 148 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccc
Confidence 356777777777655555544444 6899994 345788777777899999999999998 2111111 000000
Q ss_pred CCCChhhcccHHHHHH-hCcceeEeeccccCCCC--HHHHHHHHHHHHHH
Q 010610 391 PTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF--PLKAVKVMHTVSLR 437 (506)
Q Consensus 391 ~~PtRAEv~Dvanav~-dG~D~vmLs~ETA~G~y--PveaV~~m~~I~~~ 437 (506)
.-...+..++..++. -|+|++-.+-=|+.|.| |---...+.+|...
T Consensus 149 -~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~ 197 (283)
T PRK07998 149 -ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEV 197 (283)
T ss_pred -ccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhh
Confidence 000112234456664 69999999999999999 44334566666544
No 315
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=56.36 E-value=1.2e+02 Score=31.42 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=57.9
Q ss_pred HHhHhhHhcCCcEEEEc------cCCCHHHHHHH-HHHHHhcCCCceEEEecC---ChhhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHEL-KNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS------fV~saedV~~l-r~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDGImIaRG 348 (506)
+.++|.++.|+|+|.+. +--|.++=.++ +...+..+.+++||+-+= |.++++....--+. +||+|+-+-
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34578899999998762 33344444444 444555677888999754 45566555544444 899998643
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
.+-- .+.+.+...-+.| |.+.+.|+|+-
T Consensus 109 yY~k-~~~~gl~~hf~~i---a~a~~lPvilY 136 (299)
T COG0329 109 YYNK-PSQEGLYAHFKAI---AEAVDLPVILY 136 (299)
T ss_pred CCcC-CChHHHHHHHHHH---HHhcCCCEEEE
Confidence 3211 1123444444444 44458998876
No 316
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=56.29 E-value=33 Score=35.48 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=49.0
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEc
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIa 346 (506)
..++.+.+++.|+|.|.+=. -+++++.++.+++++.+.++ +||=.-|+ +|+.++.+. +|.|.+|
T Consensus 197 tleea~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~~~~~----~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDK-FTPQQLHHLHERLKFFDHIP----TLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHHHHHHHcCcCEEEECC-CCHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 56778888999999999986 67899999988886545553 35555554 577777777 8988876
No 317
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=56.18 E-value=76 Score=30.71 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhh-hhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 304 VHELKNYLKSCGADIHVIVKIESADS-IPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 304 V~~lr~~l~~~~~~i~IIaKIEt~~a-veNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
++.+.+.+++.|.++.|.+.-|.... .++.++++...|.|+.+-. . ......+-+.|+++++|++.+.
T Consensus 77 a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~-~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 77 AAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEE---------N-YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCC---------C-HHHHHHHHHHHHHcCCCEEEEE
Confidence 45667778888998888776665542 4677888888998887622 1 4456668899999999999864
No 318
>PRK08198 threonine dehydratase; Provisional
Probab=56.13 E-value=2.4e+02 Score=30.12 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+.+.- |...-...+...-..|++.+.. + +.| -++++...+++++ +..++.
T Consensus 84 alA~~a~~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~Vi~~-~----~~~-~~~~~~a~~~~~~-~g~~~~ 145 (404)
T PRK08198 84 GVAYAASLLGIKATIVM-----------PETAPLSKVKATRSYGAEVVLH-G----DVY-DEALAKAQELAEE-TGATFV 145 (404)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhCCCEEEEE-C----CCH-HHHHHHHHHHHHh-cCCEec
Confidence 34567999999998862 2222222355666789988765 2 233 4777766666544 222211
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
..|.+ ....+.....+.++.++++- +||+..-+|.+. +.+-.+.|...|+++-+
T Consensus 146 -~~~~~------~~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~ 205 (404)
T PRK08198 146 -HPFDD------PDVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQA 205 (404)
T ss_pred -CCCCC------ccHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 11111 11222333445677777754 788887778754 55556789999999865
No 319
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=55.90 E-value=1.8e+02 Score=31.20 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=74.5
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCH---------------HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh---
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--- 339 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~sa---------------edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--- 339 (506)
..+|++.+++.|+|+|.+.+--|. +.+.+..++.++.|..+.+-+.-.+..-.+.+-++++.
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 577899999999999988875554 33444555666666654443333333334444444443
Q ss_pred --CCEEEEcCCC-cccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH---HHHhCcceeE
Q 010610 340 --SDGAMVARGD-LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI---AVREGADAVM 413 (506)
Q Consensus 340 --sDGImIaRGD-Lgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan---av~dG~D~vm 413 (506)
+|.|.++ | .|.-.| +++...-+.+. +..+.|+.+.++ ...--| +|| |+..|++.+=
T Consensus 157 ~Ga~~I~l~--DT~G~~~P-~~v~~lv~~l~---~~~~~~l~~H~H--------nd~GlA----~AN~laAv~aGa~~vd 218 (378)
T PRK11858 157 AGADRVRFC--DTVGILDP-FTMYELVKELV---EAVDIPIEVHCH--------NDFGMA----TANALAGIEAGAKQVH 218 (378)
T ss_pred CCCCEEEEe--ccCCCCCH-HHHHHHHHHHH---HhcCCeEEEEec--------CCcCHH----HHHHHHHHHcCCCEEE
Confidence 4666654 3 232222 23333333332 233788888874 222222 455 6788888654
Q ss_pred ee----ccccCCCCHHHHHHH
Q 010610 414 LS----GETAHGKFPLKAVKV 430 (506)
Q Consensus 414 Ls----~ETA~G~yPveaV~~ 430 (506)
-| || ..|+=|+|.|-+
T Consensus 219 ~tv~GlGe-raGNa~lE~vv~ 238 (378)
T PRK11858 219 TTVNGLGE-RAGNAALEEVVM 238 (378)
T ss_pred Eeeccccc-cccCccHHHHHH
Confidence 21 34 357777776543
No 320
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=55.78 E-value=1.1e+02 Score=32.31 Aligned_cols=126 Identities=19% Similarity=0.331 Sum_probs=79.8
Q ss_pred HHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE-ehh--h
Q 010610 309 NYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNM--L 384 (506)
Q Consensus 309 ~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA-Tqm--L 384 (506)
.+.++.+..++|...+.+..-++.+.+-++. .+-||+... .+|+++=...-+++++.|+.+|..|=-= ..+ .
T Consensus 77 ~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S----~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ 152 (321)
T PRK07084 77 EYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGS----HLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGV 152 (321)
T ss_pred HHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 3333333467888888888766666555555 679999744 4688888888899999999999886310 000 0
Q ss_pred hhhhcCCCCChhhcccHHHHHH-hCcceeEeeccccCCCCHH--------HHHHHHHHHHHHH
Q 010610 385 ESMIVHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL--------KAVKVMHTVSLRT 438 (506)
Q Consensus 385 eSMi~~~~PtRAEv~Dvanav~-dG~D~vmLs~ETA~G~yPv--------eaV~~m~~I~~~a 438 (506)
|--.....-......+...++. -|+|++-.+-=|+.|.|+- --...+.+|-..+
T Consensus 153 ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 153 EDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred cCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc
Confidence 1000000000111234556775 4999999999999999963 3455666665555
No 321
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=55.70 E-value=22 Score=34.74 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHh
Q 010610 121 NTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQ 162 (506)
Q Consensus 121 ~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~ 162 (506)
+-.+.|.+|.++|++.|||.+-.-+.++..++++..|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999987543
No 322
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=55.65 E-value=40 Score=34.43 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=47.3
Q ss_pred cCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEc
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIa 346 (506)
...+++..+++.|+|+|.+.-+ ++++++++.++++.. .+++ ||=--|+ +|+.++++. +|+|-++
T Consensus 189 ~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 189 ETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 4567788889999999999776 568888887777543 3333 3434444 789999888 8999875
No 323
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=55.58 E-value=2.4e+02 Score=28.93 Aligned_cols=86 Identities=26% Similarity=0.265 Sum_probs=56.5
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecccc
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA 419 (506)
+|.||.--...|-..|+.. +...+.|.+. .+.|||+-.. +-|. +|++.++..|+|++++..=-+
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~egG---------I~tp---eda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIVDAG---------IGTP---SDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEEeCC---------CCCH---HHHHHHHHcCCCEEEEChHhc
Confidence 4555542223333345544 5555555443 4789987642 3233 479999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc
Q 010610 420 HGKFPLKAVKVMHTVSLRTEAT 441 (506)
Q Consensus 420 ~G~yPveaV~~m~~I~~~aE~~ 441 (506)
.++.|..-.+.+..-++.-...
T Consensus 209 ~a~dP~~ma~af~~Av~aGr~a 230 (248)
T cd04728 209 KAKDPVAMARAFKLAVEAGRLA 230 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 8889988888887776555443
No 324
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=55.39 E-value=1.1e+02 Score=31.77 Aligned_cols=117 Identities=17% Similarity=0.237 Sum_probs=78.7
Q ss_pred CceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh----hhhhcCC
Q 010610 317 DIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML----ESMIVHP 391 (506)
Q Consensus 317 ~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL----eSMi~~~ 391 (506)
.++|...+....-++.+..-++. .+-||+. |-.+|+++=...-+++++.|+++|.+|=-==..+ +.....
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~- 151 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAE- 151 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccc-
Confidence 36899999988866666655555 6799997 4467888888888999999999999862100000 110000
Q ss_pred CCChhhcccHHHHHH-hCcceeEeeccccCCCC---HHHHHHHHHHHHHHH
Q 010610 392 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (506)
Q Consensus 392 ~PtRAEv~Dvanav~-dG~D~vmLs~ETA~G~y---PveaV~~m~~I~~~a 438 (506)
.-......+...|+. -|+|++-.|-=|+.|.| |---.+.+.+|....
T Consensus 152 ~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 152 GVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred cccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH
Confidence 000112234556665 59999999999999999 656667777776554
No 325
>PRK15447 putative protease; Provisional
Probab=55.09 E-value=58 Score=33.72 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=48.8
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
+|+|.+|-..++.-.++ -..-.+++++.|+++||.+.++|.-+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 89999996666654433 33556788899999999999987322 112457777888888888987753
No 326
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=54.99 E-value=98 Score=31.38 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHhHhhHhcCCcEEEEc------cCCC-HHHHHHHHHHHHhcCCCceEEEecCC---hhhhhhHHHHHHh-CCEEEEcCC
Q 010610 280 DDIKFGVDNKVDFYAVS------FVKD-AQVVHELKNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS------fV~s-aedV~~lr~~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDGImIaRG 348 (506)
+.+++.+++|+|++.+. +--| .|-.+-++..++..+.+++||+.+-. .++++.+...-+. +||+|+.+-
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 44578889999999874 2223 33333344445556778889998764 4555555544444 799998754
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
.+.. ...+++. +..-..|.+.+.|+++.-
T Consensus 106 ~~~~-~s~~~l~---~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 106 YYFK-PSQEELI---DYFRAIADATDLPIIIYN 134 (289)
T ss_dssp TSSS-CCHHHHH---HHHHHHHHHSSSEEEEEE
T ss_pred cccc-chhhHHH---HHHHHHHhhcCCCEEEEE
Confidence 3321 1222333 344444566888988753
No 327
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=54.67 E-value=1.6e+02 Score=28.28 Aligned_cols=101 Identities=9% Similarity=0.120 Sum_probs=56.3
Q ss_pred CHHHh-HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEec---CChh-hhhhHHHHHHh---CCEEEEcCCC
Q 010610 278 DWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKI---ESAD-SIPNLHSIITA---SDGAMVARGD 349 (506)
Q Consensus 278 D~~dI-~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKI---Et~~-aveNldeIl~~---sDGImIaRGD 349 (506)
|.+.+ +...+.|++.++++-. ++.+...+.+..++.+ ++....=| +... .-+.++++-+. .....| |.
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~~-~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i--GE 91 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVGT-DLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI--GE 91 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEecC-CHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--Ee
Confidence 45544 4556789998875533 3677888877776655 54433322 1111 12233444333 223344 66
Q ss_pred cccCCCCCcH-H----HHHHHHHHHHHHcCCcEEEEeh
Q 010610 350 LGAELPIEEV-P----LLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 350 Lgvelg~e~V-~----~~Qk~II~~c~~~GkPvivATq 382 (506)
.|.+.....- . .+-+.+++.|++.|+||.+.|.
T Consensus 92 iGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 92 TGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 6665532111 1 3335566778999999999874
No 328
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=54.33 E-value=71 Score=32.00 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
-+..+++.+.+.|.++.|-+--+.... +|+++++..+|.|+-+-. -+.....+-+.|+++++|++.+.
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D----------~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTD----------NVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCC----------CHHHHHHHHHHHHHcCCCEEEEE
Confidence 455566777777888776664443332 578888888898887622 23456778899999999999864
No 329
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=54.20 E-value=1.9e+02 Score=31.15 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+.+.. |..+--..+.+.-..|++.+... +. .-++++.+.+++++-. .++.
T Consensus 127 alA~~aa~~Gi~~~Ivv-----------P~~~~~~K~~~ir~~GAeVi~~~-----~~-~~~a~~~a~~~a~~~g-~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVYM-----------PKGSAQIRLENIRAEGAECTITD-----LN-YDDAVRLAWKMAQENG-WVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEEE-----------eCCCcHHHHHHHHhcCCEEEEEC-----CC-HHHHHHHHHHHHHhcC-cEee
Confidence 34568999999999872 22222234777788999877653 23 4578888887765522 1111
Q ss_pred CCC-CCCCCcCcCCChHHHHHHHHHHHHhhcC------c-eEEEEcCChHHHHHHHh-----hCCCCe-EEEEeC
Q 010610 445 GAM-PPNLGQAFKNHMSEMFAYHATMMSNTLG------T-SIVVFTRTGFMAILLSH-----YRPSGT-IFAFTN 505 (506)
Q Consensus 445 ~~~-~~~~~~~~~~~~~~~ia~~av~~A~~~~------a-~Iiv~T~sG~tA~~lS~-----~RP~~p-Iia~T~ 505 (506)
... ++... .......+-....+.++.++++ . .||+.+-+|.++--++. ++|..| |+++-|
T Consensus 189 ~~~~~~~~~-~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep 262 (396)
T TIGR03528 189 QDTAWEGYE-KIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEP 262 (396)
T ss_pred ccccccccc-cCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 100 00000 0011112223334556666664 3 78887777765544433 366665 787754
No 330
>PLN02565 cysteine synthase
Probab=53.93 E-value=2.1e+02 Score=29.90 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=70.7
Q ss_pred HHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCCC
Q 010610 367 IRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGA 446 (506)
Q Consensus 367 I~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~ 446 (506)
...|+.+|.|+.+. .|..+...-+...-..|++.++.-.+ . ..-++++...+++++....++ ..
T Consensus 83 A~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~--~~~~~~~~a~~l~~~~~~~~~-~~ 146 (322)
T PLN02565 83 AFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA--K--GMKGAVQKAEEILAKTPNSYI-LQ 146 (322)
T ss_pred HHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC--C--CcHHHHHHHHHHHHhCCCcEe-ec
Confidence 34899999999986 45555555677788899988765321 1 223566666666544212221 11
Q ss_pred CCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 447 MPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 447 ~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
.|.+. .++.--...-+.++.++++ . .||+..-+|.+. +.+..++|.+.|+++.+
T Consensus 147 q~~n~-----~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep 207 (322)
T PLN02565 147 QFENP-----ANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEP 207 (322)
T ss_pred ccCCH-----hHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 11110 0111112334456777775 4 888888888775 55555679999999976
No 331
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=53.85 E-value=67 Score=32.63 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHh-CCEEEEcCCCcc--cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcc-cHHHHHHhCc
Q 010610 334 HSIITA-SDGAMVARGDLG--AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVS-DIAIAVREGA 409 (506)
Q Consensus 334 deIl~~-sDGImIaRGDLg--velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~-Dvanav~dG~ 409 (506)
+.+++. +||+++. |--| ..+..++-..+.+..++.++ -..||+..+ ...+-.|.- -.-.|...|+
T Consensus 26 ~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~~a~~~Ga 94 (285)
T TIGR00674 26 DFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTKFAEDVGA 94 (285)
T ss_pred HHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHHHHHHcCC
Confidence 444443 7999984 2222 33344444444444444442 236777654 122233433 3445778899
Q ss_pred ceeEeeccccCCCCHHHHHHHHHHHHHHHhc
Q 010610 410 DAVMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (506)
Q Consensus 410 D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~ 440 (506)
|++|+..=.....-+-+.++....|+..++.
T Consensus 95 d~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 95 DGFLVVTPYYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred CEEEEcCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999986555544467788999999887753
No 332
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=53.72 E-value=58 Score=39.04 Aligned_cols=135 Identities=20% Similarity=0.184 Sum_probs=83.8
Q ss_pred CCCeeeecCCCCccccccccccccccccccccccccccCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCC
Q 010610 65 VEPEVVPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHG 144 (506)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg 144 (506)
.+.+.+++++|..+.|.++++||..... +++.+++-+| =+||
T Consensus 745 ~~~~~~~lT~eg~~kL~~EL~~L~~v~R------------------------------pei~~~I~~A--------r~~G 786 (906)
T PRK14720 745 VPEIGFLVTRRALNKKKKELEHLKDVEM------------------------------PENSKDIGEA--------QELG 786 (906)
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHHhhH------------------------------HHHHHHHHHH--------HhCC
Confidence 3444569999999999999999875431 3455555554 3566
Q ss_pred Ch----------HHHHHHHHHHHHHHHhcCCceEEEEee---cCCCeeEEeccCCCeEe---cCCCEEEEE--Ee-cCCC
Q 010610 145 DH----------ASHQKVIDLVKEYNAQSKDNVIAIMLD---TKGPEVRSGDLPQPITL---TSGQEFTFT--IQ-RGVG 205 (506)
Q Consensus 145 ~~----------e~~~~~i~~ir~~~~~~~~~~i~Il~D---L~GPkIRtG~l~~~i~L---k~G~~v~lt--~~-~~~~ 205 (506)
+. ++..++-..+++..+.+. . +-.+| .+..+++.|.. +.| ..|++.+++ .. +...
T Consensus 787 DLsENaEY~aAKe~q~~le~RI~eLe~~L~--~-A~IId~~~~~~d~V~~GS~---Vtl~d~d~~ee~ty~IVGp~EaD~ 860 (906)
T PRK14720 787 DLRENAEYKAAKEKQQQLQAALKRLEAEID--S-AKILDLTDVKTSKVGFGTK---VKLKNEDTGEEESYSILGPWESDP 860 (906)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHh--c-CEEeCcccCCCCEEEeCCE---EEEEECCCCCEEEEEEEChhhcCc
Confidence 63 345556666777777665 2 22233 33457777765 544 356754444 22 2223
Q ss_pred CceEEEeccch--hhhhcCCCCEEEEe--CCeEEEEEEEEeC
Q 010610 206 SAECVSVNYDD--FVNDVEVGDMLLVD--GGMMSLLVKSKTE 243 (506)
Q Consensus 206 ~~~~i~v~~~~--l~~~v~~Gd~IliD--DG~i~l~V~~~~~ 243 (506)
..+.|++..|- -.=.-++||.|-+. +|...++|.++..
T Consensus 861 ~~g~IS~~SPLGkALLGkkvGD~V~v~~P~g~~~yeIl~I~~ 902 (906)
T PRK14720 861 EEGIISYQSPLGKSLLGKKEGDSLEFVINDTETRYTVLKIER 902 (906)
T ss_pred CCCeECCCCHHHHHHcCCCCCCEEEEEECCceEEEEEEEEEe
Confidence 34567766551 22234899999875 8999999998864
No 333
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=53.71 E-value=1.4e+02 Score=32.04 Aligned_cols=141 Identities=9% Similarity=0.085 Sum_probs=78.0
Q ss_pred HhhHhcCCcEEE-------EccCCCHHHHHHHHHHHHhcC----CCceEEEec--CChhhhhhHHHHHHh-CCEEEEcCC
Q 010610 283 KFGVDNKVDFYA-------VSFVKDAQVVHELKNYLKSCG----ADIHVIVKI--ESADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 283 ~~al~~gvD~Ia-------lSfV~saedV~~lr~~l~~~~----~~i~IIaKI--Et~~aveNldeIl~~-sDGImIaRG 348 (506)
.+.++.|+|+|. .+|..-.+-+..+++.+++.+ ....+++-| .+.+.+++.+...+. +|++|+...
T Consensus 153 ~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 153 YELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred HHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 456678999984 245666666666666665444 556677776 346677777777766 899999744
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHH
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAV 428 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV 428 (506)
-. ++ ..+..+.+ ..+.|+...-.+.-.|..+|.=--....-.--+-+.|+|.++.. |..|+|+.. -
T Consensus 233 ~~----g~----~~~~~l~~---~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~--~~~gk~~~~-~ 298 (367)
T cd08205 233 LV----GL----DALRALAE---DPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFP--GPGGRFPFS-R 298 (367)
T ss_pred cc----cc----cHHHHHHh---cCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccC--CCccCcCCC-H
Confidence 22 11 12333333 23777776554444444333210000000111445788888775 457787533 3
Q ss_pred HHHHHHHHH
Q 010610 429 KVMHTVSLR 437 (506)
Q Consensus 429 ~~m~~I~~~ 437 (506)
+...++++.
T Consensus 299 ~~~~~la~~ 307 (367)
T cd08205 299 EECLAIARA 307 (367)
T ss_pred HHHHHHHHH
Confidence 334444443
No 334
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=53.68 E-value=2.1e+02 Score=29.45 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=79.5
Q ss_pred CCCCCccCHHHhHhhHhcCCcEEEEc---------c-----CCCHHHHHHHHHHHHhcCCCceEEEec------CChhhh
Q 010610 271 LPSITEKDWDDIKFGVDNKVDFYAVS---------F-----VKDAQVVHELKNYLKSCGADIHVIVKI------ESADSI 330 (506)
Q Consensus 271 lp~ltekD~~dI~~al~~gvD~IalS---------f-----V~saedV~~lr~~l~~~~~~i~IIaKI------Et~~av 330 (506)
+--+|-+|.---+.+-+.|+|.|.+. | |.--+-+..++... +.-.+..|++-+ .-.+++
T Consensus 17 i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~-rg~~~~~vv~DmPf~sy~~~e~a~ 95 (263)
T TIGR00222 17 IVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVK-RGAPNCLIVTDLPFMSYATPEQAL 95 (263)
T ss_pred EEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHH-hhCCCceEEeCCCcCCCCCHHHHH
Confidence 34557888888788888999999864 1 22222223333333 323455566322 245799
Q ss_pred hhHHHHHHh--CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEE-------EEehhhh-hhhcCCCCChhh--c
Q 010610 331 PNLHSIITA--SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI-------VATNMLE-SMIVHPTPTRAE--V 398 (506)
Q Consensus 331 eNldeIl~~--sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvi-------vATqmLe-SMi~~~~PtRAE--v 398 (506)
+|...+++. +|+|=|--| ..+-..++...+.|.||+ .....+- -.+....+.+++ +
T Consensus 96 ~na~rl~~eaGa~aVkiEgg------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i 163 (263)
T TIGR00222 96 KNAARVMQETGANAVKLEGG------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLL 163 (263)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHH
Confidence 999999984 788888643 223456689999999999 3222222 122222223333 4
Q ss_pred ccHHHHHHhCcceeEee
Q 010610 399 SDIAIAVREGADAVMLS 415 (506)
Q Consensus 399 ~Dvanav~dG~D~vmLs 415 (506)
.|.-.....|+|+++|-
T Consensus 164 ~~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 164 EDALALEEAGAQLLVLE 180 (263)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 45555668899999993
No 335
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=53.63 E-value=26 Score=35.76 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=45.0
Q ss_pred cCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhhHHHHHHh-CCEEEEc
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVA 346 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDGImIa 346 (506)
.+.+.++.+.+.|+|+|.+..+ ++++++++.+.+. ..+++.| --| .+|+.++++. +|+|-++
T Consensus 186 ~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~---~~ipi~A----sGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 186 ESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLK---GRVLLEA----SGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhc---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEeC
Confidence 4668888899999999999886 4577777776653 2233333 333 4788888888 8999984
No 336
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=53.55 E-value=1.6e+02 Score=31.92 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHc-CCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeecc
Q 010610 358 EVPLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGE 417 (506)
Q Consensus 358 ~V~~~Qk~II~~c~~~-GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~E 417 (506)
.-+..-++|++.+++. .+|+++= ..|.-.++.+++. +...|+|++.|.+=
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~vK----------LsPn~t~i~~ia~aa~~~Gadgi~liNT 216 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWAK----------MTPNITDITQPARVALKSGCEGVAAINT 216 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEEE----------eCCChhhHHHHHHHHHHhCCCEEEEecc
Confidence 3477778888888764 6898873 3566666777787 66788999998653
No 337
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.66 E-value=55 Score=33.79 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=47.2
Q ss_pred cCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhhHHHHHHh-CCEEEEcC
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDGImIaR 347 (506)
.+.++++.+++.|+|+|.+.. -++++++++.+.+. .++++.| --| .+|+.++++. +|+|-+|.
T Consensus 197 ~tleea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~---~~i~leA----sGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 197 ESLDELRQALAAGADIVMLDE-LSLDDMREAVRLTA---GRAKLEA----SGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred CCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEECh
Confidence 457888899999999999975 58888888887652 3444443 222 4788888888 89999874
No 338
>PRK07591 threonine synthase; Validated
Probab=52.47 E-value=2e+02 Score=31.22 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+++|.|+.+.. |..+.-..+...-..|++.+..- |.| -++++.+.+++++-+..++.
T Consensus 151 alA~~aa~~Gl~~~I~v-----------P~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~~~ 213 (421)
T PRK07591 151 SVAAHAARAGLDSCVFI-----------PADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWGFV 213 (421)
T ss_pred HHHHHHHHcCCCEEEEE-----------cCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEEEe
Confidence 34567899999999873 33333345677788999988763 455 46777777776543221111
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC---c-eEEEEcCChHHHHHHHh----h-------CCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG---T-SIVVFTRTGFMAILLSH----Y-------RPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~---a-~Iiv~T~sG~tA~~lS~----~-------RP~~pIia~T~ 505 (506)
.. +. .+. ..+...--+.++.++++ . .||+.+-+|.+..-+.+ + +|...|+++-+
T Consensus 214 n~-~~---~p~---~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~ 282 (421)
T PRK07591 214 NI-NL---RPY---YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQA 282 (421)
T ss_pred cC-CC---Ccc---cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEec
Confidence 10 00 001 11111222457777775 4 89999999988755554 3 67788888865
No 339
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=52.32 E-value=2.5e+02 Score=29.93 Aligned_cols=135 Identities=12% Similarity=0.090 Sum_probs=80.5
Q ss_pred CCCCCCccCHHHhHhhHhcCCcEEEEccC-------------CCHHHHHHHHHHHHhcCCCceEEEecC------C-hhh
Q 010610 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFV-------------KDAQVVHELKNYLKSCGADIHVIVKIE------S-ADS 329 (506)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~IalSfV-------------~saedV~~lr~~l~~~~~~i~IIaKIE------t-~~a 329 (506)
.+--+|-+|..--+.+-+.|+|.|.+.=- -+-+++..--+.+.+.-....+++=++ + .++
T Consensus 36 kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~a 115 (332)
T PLN02424 36 PITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQA 115 (332)
T ss_pred cEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHH
Confidence 35567888888878888899999987510 112233232233333344566775554 3 478
Q ss_pred hhhHHHHHHh--CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEE----EEehhhhhhhc---CCC-CChh-h-
Q 010610 330 IPNLHSIITA--SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI----VATNMLESMIV---HPT-PTRA-E- 397 (506)
Q Consensus 330 veNldeIl~~--sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvi----vATqmLeSMi~---~~~-PtRA-E- 397 (506)
++|...++.. +|+|=+--|. ...-.+|+..-++|+||+ +--|-...|-- ..+ ...+ +
T Consensus 116 v~nA~rl~~eaGa~aVKlEGg~-----------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~l 184 (332)
T PLN02424 116 VESAVRMLKEGGMDAVKLEGGS-----------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKV 184 (332)
T ss_pred HHHHHHHHHHhCCcEEEECCCc-----------HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHHHH
Confidence 9999999864 6888775332 222355566669999998 54454444421 221 1222 2
Q ss_pred cccHHHHHHhCcceeEee
Q 010610 398 VSDIAIAVREGADAVMLS 415 (506)
Q Consensus 398 v~Dvanav~dG~D~vmLs 415 (506)
+.|.--.-..|+++++|-
T Consensus 185 i~dA~ale~AGAf~ivLE 202 (332)
T PLN02424 185 VETALALQEAGCFAVVLE 202 (332)
T ss_pred HHHHHHHHHcCCcEEEEc
Confidence 344444557899999983
No 340
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=52.31 E-value=84 Score=31.30 Aligned_cols=149 Identities=21% Similarity=0.183 Sum_probs=84.2
Q ss_pred CCCCccCHHHh-HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-----CCEEEE
Q 010610 272 PSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMV 345 (506)
Q Consensus 272 p~ltekD~~dI-~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDGImI 345 (506)
|..|+.|.+.+ +.|.++++..|+++ +..+..+++.|. |..+.|.+=|==|.|....+.-+.. .||.--
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~E 90 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADE 90 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCce
Confidence 67777776655 67888999999887 778888888883 5567777777666666554443332 122100
Q ss_pred cCCCcccCCCC---CcHHHHHHHHHHHHHH-cCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeeccccC
Q 010610 346 ARGDLGAELPI---EEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETAH 420 (506)
Q Consensus 346 aRGDLgvelg~---e~V~~~Qk~II~~c~~-~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ETA~ 420 (506)
=|+-+.++. .++..+.++|...... .++++=+ + ++.+.-+..|+.++.. ++..|+|.|--|.=-..
T Consensus 91 --iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv---I----lEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~ 161 (221)
T PRK00507 91 --IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV---I----IETCLLTDEEKVKACEIAKEAGADFVKTSTGFST 161 (221)
T ss_pred --EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE---E----eecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 122223322 1344444444433332 2333211 1 2335556777777777 77789995544311111
Q ss_pred CCCHHHHHHHHHHHH
Q 010610 421 GKFPLKAVKVMHTVS 435 (506)
Q Consensus 421 G~yPveaV~~m~~I~ 435 (506)
|.--.+.|+.|.+.+
T Consensus 162 ~gat~~~v~~m~~~~ 176 (221)
T PRK00507 162 GGATVEDVKLMRETV 176 (221)
T ss_pred CCCCHHHHHHHHHHh
Confidence 222368888887654
No 341
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=52.09 E-value=1e+02 Score=33.30 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=38.4
Q ss_pred CceEEEecC-CCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeEEec
Q 010610 109 KTKIVCTIG-PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGD 183 (506)
Q Consensus 109 ~tKIi~TiG-Pss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIRtG~ 183 (506)
+..|.-+++ -++.+.|.|.+--..|.--|-| .-+.+.+ ...+.|+++++ .|.+-+.+-+|++-+--|--+
T Consensus 113 ~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQl-Y~~~dr~---~~~~ll~RA~~-aG~~alvlTVD~pv~g~Rerd 183 (383)
T cd03332 113 ELGVPYILSTASSSSIEDVAAAAGDAPRWFQL-YWPKDDD---LTESLLRRAEK-AGYRVLVVTLDTWSLGWRPRD 183 (383)
T ss_pred HcCCCeeecCCCCCCHHHHHhhcCCCCcEEEe-eCCCCHH---HHHHHHHHHHH-cCCCEEEEeCCCCCCCCchhh
Confidence 455566665 4667777776431123323333 2233444 44455566544 465778888998877655433
No 342
>PRK06801 hypothetical protein; Provisional
Probab=52.08 E-value=1.4e+02 Score=30.98 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=78.5
Q ss_pred CCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCC--C
Q 010610 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP--T 392 (506)
Q Consensus 316 ~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~--~ 392 (506)
..++|.....+..-++.+++-++. .+.||+.- -.+|+++-...-+++.+.|+.+|.+|=..-..+-..-..+ .
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~----S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDG----STLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcC----CCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 467888888888777777666665 78999943 2457778778889999999999998733222221110000 0
Q ss_pred C----ChhhcccHHHHH-HhCcceeEeeccccCCCCHH---HHHHHHHHHHHHH
Q 010610 393 P----TRAEVSDIAIAV-REGADAVMLSGETAHGKFPL---KAVKVMHTVSLRT 438 (506)
Q Consensus 393 P----tRAEv~Dvanav-~dG~D~vmLs~ETA~G~yPv---eaV~~m~~I~~~a 438 (506)
+ ......+...++ .-|+|++-.+-=|+.|+|+- .-...+..|....
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~ 202 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT 202 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc
Confidence 0 011223456677 78999999999999999954 3455666665443
No 343
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=51.99 E-value=36 Score=35.34 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=49.3
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEc
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIa 346 (506)
..++++.+++.|+|.|.+=. -++++++++.+++++.+.++ ++|---|+ +|+.++.+. +|.|.++
T Consensus 198 tleqa~ea~~agaDiI~LDn-~~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDK-FSPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 56788889999999999975 57999999999886544443 46655555 578888877 8998876
No 344
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.68 E-value=2.3e+02 Score=29.59 Aligned_cols=131 Identities=15% Similarity=0.256 Sum_probs=66.0
Q ss_pred CCCccCHHHh--------HhhHhcCCcEEEEc-------------cCCCH------------HHHHHHHHHHH-hcCCCc
Q 010610 273 SITEKDWDDI--------KFGVDNKVDFYAVS-------------FVKDA------------QVVHELKNYLK-SCGADI 318 (506)
Q Consensus 273 ~ltekD~~dI--------~~al~~gvD~IalS-------------fV~sa------------edV~~lr~~l~-~~~~~i 318 (506)
.+|+.|++.+ +.+.+.|+|+|-+. ..+.. .-+.++.+.++ ..|.+.
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~ 217 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGF 217 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5777776665 46678999999663 32221 11222222222 236778
Q ss_pred eEEEecC---------C-hhhhhhHHHHHHh-CCEEEEcCCCcccCC-------CCCcHHHHHHHHHHH-HHHcCCcEEE
Q 010610 319 HVIVKIE---------S-ADSIPNLHSIITA-SDGAMVARGDLGAEL-------PIEEVPLLQEEIIRT-CRSMGKAVIV 379 (506)
Q Consensus 319 ~IIaKIE---------t-~~aveNldeIl~~-sDGImIaRGDLgvel-------g~e~V~~~Qk~II~~-c~~~GkPviv 379 (506)
.|..||= + .++++-++.+-+. .|.|-|.-|-..-.. +...-...+....+. .+..+.||++
T Consensus 218 ~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 297 (338)
T cd04733 218 PVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMV 297 (338)
T ss_pred eEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEE
Confidence 8888883 1 1222223333332 577776655321000 000001111223322 2235899998
Q ss_pred EehhhhhhhcCCCCChhhcccHHHHHHhC-cceeEee
Q 010610 380 ATNMLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (506)
Q Consensus 380 ATqmLeSMi~~~~PtRAEv~Dvanav~dG-~D~vmLs 415 (506)
...+ -| ..+...++.+| +|.|++.
T Consensus 298 ~G~i---------~t---~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 298 TGGF---------RT---RAAMEQALASGAVDGIGLA 322 (338)
T ss_pred eCCC---------CC---HHHHHHHHHcCCCCeeeeC
Confidence 7532 12 23466788876 8999985
No 345
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=51.53 E-value=2.3e+02 Score=27.25 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=59.9
Q ss_pred HhhHhcCCcEEEEcc----------------CCCHHHHHHHHHHHHhcCCCceEEEecCC----h-hhhhhHHHHHHh-C
Q 010610 283 KFGVDNKVDFYAVSF----------------VKDAQVVHELKNYLKSCGADIHVIVKIES----A-DSIPNLHSIITA-S 340 (506)
Q Consensus 283 ~~al~~gvD~IalSf----------------V~saedV~~lr~~l~~~~~~i~IIaKIEt----~-~aveNldeIl~~-s 340 (506)
+.+.+.|+|+|-+.+ .++++-+.++.+.+.+.-. ..+.+|+-. . +.++-+..+.+. +
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~~~l~~~Gv 152 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELAKALEDAGA 152 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHHHHHHHhCC
Confidence 455567999997653 2355555555555543222 567777632 1 233333333332 5
Q ss_pred CEEEEcCCCccc-CCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHh-CcceeEee
Q 010610 341 DGAMVARGDLGA-ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE-GADAVMLS 415 (506)
Q Consensus 341 DGImIaRGDLgv-elg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~d-G~D~vmLs 415 (506)
|.|-+.-+.-.. ..+...+.. +-..++..+.|++.... .-+ ..|+..++.. |+|++|+.
T Consensus 153 d~i~v~~~~~~~~~~~~~~~~~----~~~i~~~~~ipvi~~Gg---------i~~---~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 153 SALTVHGRTREQRYSGPADWDY----IAEIKEAVSIPVIANGD---------IFS---LEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CEEEECCCCHHHcCCCCCCHHH----HHHHHhCCCCeEEEeCC---------CCC---HHHHHHHHHhcCCCEEEEc
Confidence 778665432100 111122222 22222345788887542 222 3356677776 89999995
No 346
>PRK11761 cysM cysteine synthase B; Provisional
Probab=51.52 E-value=2.4e+02 Score=28.91 Aligned_cols=118 Identities=11% Similarity=0.016 Sum_probs=66.3
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+.+|.|+.+.. |..+.-.-+...-..|++.+....+ |.| .++.+...++.++- ..++ .
T Consensus 78 lA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~~-~~~~-~ 140 (296)
T PRK11761 78 LAMIAAIKGYRMKLIM-----------PENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAEG-EGKV-L 140 (296)
T ss_pred HHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhcc-CCEe-c
Confidence 3458999999999873 2222223355566789999887532 333 34444444443321 1111 1
Q ss_pred CCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
..|.+ . ..+..-...-+.++.++++ . .||+.+-+|.+. +.+..++|...|+++-|
T Consensus 141 ~~~~n----~-~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep 202 (296)
T PRK11761 141 DQFAN----P-DNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQP 202 (296)
T ss_pred CCCCC----h-hhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 11111 0 0111111223456777774 4 788888888554 67777789999999876
No 347
>PRK08185 hypothetical protein; Provisional
Probab=51.49 E-value=2e+02 Score=29.90 Aligned_cols=118 Identities=17% Similarity=0.288 Sum_probs=80.8
Q ss_pred CCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCC-C-
Q 010610 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP-T- 392 (506)
Q Consensus 316 ~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~-~- 392 (506)
..++|...+.+..-++.+..-++. .+.||+---+ +|+++-...-+++++.|+.+|.+|=.-=..+-. .... .
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~-~e~~~~~ 141 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL----LPYEENVALTKEVVELAHKVGVSVEGELGTIGN-TGTSIEG 141 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccC-ccccccc
Confidence 468899999998877776666655 5789998555 488888889999999999999997322111100 0000 0
Q ss_pred -CC---hhhcccHHHHHHh-CcceeEeeccccCCCCHH-----HHHHHHHHHHHHH
Q 010610 393 -PT---RAEVSDIAIAVRE-GADAVMLSGETAHGKFPL-----KAVKVMHTVSLRT 438 (506)
Q Consensus 393 -Pt---RAEv~Dvanav~d-G~D~vmLs~ETA~G~yPv-----eaV~~m~~I~~~a 438 (506)
.. .....++..++.. |+|++-.|-=|+.|.||- --+..+.+|....
T Consensus 142 ~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 142 GVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred ccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 00 0112234778887 999999999999999964 3466777776554
No 348
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=51.26 E-value=79 Score=31.06 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
-+..+++.+.+.|.++.|-+--+.. .-+|+++++.-.|.|+.+-.+. .....+-+.|+++++|.+.+
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 4556677888888877665544433 3478888888899988873322 35667889999999999976
No 349
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=51.00 E-value=1.8e+02 Score=28.46 Aligned_cols=133 Identities=20% Similarity=0.146 Sum_probs=70.3
Q ss_pred HHHhHhhHhcCCcEEEEccCCC---------------HHHHHHHHHHHHhcCCCceEEEecCChhh----hhhHHHHHH-
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKD---------------AQVVHELKNYLKSCGADIHVIVKIESADS----IPNLHSIIT- 338 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~s---------------aedV~~lr~~l~~~~~~i~IIaKIEt~~a----veNldeIl~- 338 (506)
.++++.+.+.|+|.|.+++--+ .+.+.+..+++++.|. .+..-+|+.-. .+.+.++++
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~--~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL--EVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeecCCCCCHHHHHHHHHH
Confidence 5678888999999999998665 3344444455555554 45555544433 222222222
Q ss_pred ---h-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcC--CcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCccee
Q 010610 339 ---A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMG--KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV 412 (506)
Q Consensus 339 ---~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~G--kPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~v 412 (506)
. +|.|.++ |- .|. ..|.-..++++..++.- .|+.+.++ ...--|- .-...|+..|+|.|
T Consensus 155 ~~~~g~~~i~l~--Dt---~G~-~~P~~v~~li~~l~~~~~~~~~~~H~H--------n~~gla~-an~laA~~aG~~~i 219 (265)
T cd03174 155 LEEAGADEISLK--DT---VGL-ATPEEVAELVKALREALPDVPLGLHTH--------NTLGLAV-ANSLAALEAGADRV 219 (265)
T ss_pred HHHcCCCEEEec--hh---cCC-cCHHHHHHHHHHHHHhCCCCeEEEEeC--------CCCChHH-HHHHHHHHcCCCEE
Confidence 2 5777765 32 221 33444444455544332 67887763 2222221 11223778888765
Q ss_pred Eee----ccccCCCCHHHHHH
Q 010610 413 MLS----GETAHGKFPLKAVK 429 (506)
Q Consensus 413 mLs----~ETA~G~yPveaV~ 429 (506)
=-| || ..|+=|.|.+-
T Consensus 220 d~s~~G~G~-~~Gn~~~e~~~ 239 (265)
T cd03174 220 DGSVNGLGE-RAGNAATEDLV 239 (265)
T ss_pred Eeccccccc-cccCccHHHHH
Confidence 211 22 45666766654
No 350
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=51.00 E-value=79 Score=31.93 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=56.8
Q ss_pred HHHHHh-CCEEEEcCCCcc--cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcc
Q 010610 334 HSIITA-SDGAMVARGDLG--AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGAD 410 (506)
Q Consensus 334 deIl~~-sDGImIaRGDLg--velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D 410 (506)
+-+++. +||+++. |--| ..+..++-..+.+...+.+. -..|+++.+. ...|+.-+.-.-.+...|+|
T Consensus 28 ~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~--------~~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 28 EFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTG--------SNNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred HHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccC--------CccHHHHHHHHHHHHHcCCC
Confidence 333443 7999987 4322 23333444444444444432 2457765531 12233224445557888999
Q ss_pred eeEeeccccCCCCHHHHHHHHHHHHHHHh
Q 010610 411 AVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 411 ~vmLs~ETA~G~yPveaV~~m~~I~~~aE 439 (506)
++|+..-.....-+-+.++..+.|+..+.
T Consensus 98 ~v~~~~P~~~~~~~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 98 AALVVTPYYNKPSQEGLYAHFKAIAEATD 126 (284)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHhcCC
Confidence 99998766555556788999999988754
No 351
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=50.99 E-value=46 Score=32.37 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=40.0
Q ss_pred CHHHhHhhHhcCCcEEEEcc--------CCCHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHh-CCEEEEc
Q 010610 278 DWDDIKFGVDNKVDFYAVSF--------VKDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVA 346 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSf--------V~saedV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDGImIa 346 (506)
..++++.+.+.|+|+|.++. .....+...++++.+.. ++++++ -|-|+ +++.++++. +||+++|
T Consensus 128 t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~---~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 128 TLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP---EQAKKALELGAHAVVVG 202 (221)
T ss_pred CHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH---HHHHHHHHCCCCEEEEc
Confidence 34566788899999997631 12223344444443332 355555 34443 566777766 8999999
Q ss_pred CC
Q 010610 347 RG 348 (506)
Q Consensus 347 RG 348 (506)
+.
T Consensus 203 sa 204 (221)
T PRK01130 203 GA 204 (221)
T ss_pred hH
Confidence 65
No 352
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=50.87 E-value=56 Score=36.43 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=92.2
Q ss_pred eEEEEEeeCcEeCCCCccccCCCccCCCCCCccCHHHhHhhHhcCCcEEE---EccCCCHHHHHHHHHHHHhcCCCceEE
Q 010610 245 SVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYA---VSFVKDAQVVHELKNYLKSCGADIHVI 321 (506)
Q Consensus 245 ~v~~~V~~gG~L~s~KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~Ia---lSfV~saedV~~lr~~l~~~~~~i~II 321 (506)
.++.++-.|. ++..|=.||+.+++ + +...+ ....-|+|.|. ...+-|.+|+.++..-|++.+..-+|.
T Consensus 237 ~ieIKiaQGA--KPGeGG~Lpg~KV~-----~-~IA~~-R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~ 307 (485)
T COG0069 237 AIEIKIAQGA--KPGEGGQLPGEKVT-----P-EIAKT-RGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKIS 307 (485)
T ss_pred eEEEEeccCC--CCCCCCCCCCccCC-----H-HHHHh-cCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEE
Confidence 3344444433 23344556766653 1 11222 22344565553 224568899999988899988777799
Q ss_pred EecCChhhhhhHHH-HHHh-CCEEEEcCCCcccCCC-----------CC-cHHHHHHHHHHHHHHcCCcEEEEehhhhhh
Q 010610 322 VKIESADSIPNLHS-IITA-SDGAMVARGDLGAELP-----------IE-EVPLLQEEIIRTCRSMGKAVIVATNMLESM 387 (506)
Q Consensus 322 aKIEt~~aveNlde-Il~~-sDGImIaRGDLgvelg-----------~e-~V~~~Qk~II~~c~~~GkPvivATqmLeSM 387 (506)
+|+=...+++-+.. .+++ +|.|.|.=.|=|.-.. ++ -++.+++.+...-.+ .++.+.+.--|-
T Consensus 308 VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~Ggl~-- 384 (485)
T COG0069 308 VKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR-DKVKLIADGGLR-- 384 (485)
T ss_pred EEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc-ceeEEEecCCcc--
Confidence 99988888877766 4444 8999998666444322 11 466677766666555 555554443331
Q ss_pred hcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 388 IVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 388 i~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
| -.||+.|++.|+|.+=.
T Consensus 385 ------T---g~DVaka~aLGAd~v~~ 402 (485)
T COG0069 385 ------T---GADVAKAAALGADAVGF 402 (485)
T ss_pred ------C---HHHHHHHHHhCcchhhh
Confidence 2 24899999999998754
No 353
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.80 E-value=3.3e+02 Score=28.80 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=87.5
Q ss_pred CCccCHHHhHh-hHhcCCcEEEE---------ccC-C--CHHHHHHHHHHHHhcCCCceEEEec----CChhhhhhHHHH
Q 010610 274 ITEKDWDDIKF-GVDNKVDFYAV---------SFV-K--DAQVVHELKNYLKSCGADIHVIVKI----ESADSIPNLHSI 336 (506)
Q Consensus 274 ltekD~~dI~~-al~~gvD~Ial---------SfV-~--saedV~~lr~~l~~~~~~i~IIaKI----Et~~aveNldeI 336 (506)
++..++..|.. ..+.|+|.|=+ ||. . ...+.+.++.+... ..+.++.+.+ -+. +.++.-
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll~pg~~~~---~dl~~a 97 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALLLPGIGTV---DDLKMA 97 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEeccCcccH---HHHHHH
Confidence 34555555544 45689999977 443 1 11234444444333 2334444433 232 223333
Q ss_pred HHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH-HHhCcceeEe
Q 010610 337 ITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVML 414 (506)
Q Consensus 337 l~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana-v~dG~D~vmL 414 (506)
.+. .|.|-|+ ....+.. .-++.++.++++|.-|.+. +.. .+..+.+++.+.+.. ...|+|++-+
T Consensus 98 ~~~gvd~iri~-------~~~~e~~-~~~~~i~~ak~~G~~v~~~--l~~----a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 98 YDAGVRVVRVA-------THCTEAD-VSEQHIGLARELGMDTVGF--LMM----SHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HHcCCCEEEEE-------EecchHH-HHHHHHHHHHHCCCeEEEE--EEe----ccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 332 6777765 2333332 4588999999999887654 221 245566777777764 5569999888
Q ss_pred eccccCCCCHHHHHHHHHHHHHHH
Q 010610 415 SGETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 415 s~ETA~G~yPveaV~~m~~I~~~a 438 (506)
. +|+=.-+|.+.-+.+..+-.+.
T Consensus 164 ~-DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 164 V-DSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred C-CCCCCCCHHHHHHHHHHHHHhc
Confidence 4 9998999998888777776554
No 354
>PRK00208 thiG thiazole synthase; Reviewed
Probab=50.49 E-value=3e+02 Score=28.27 Aligned_cols=86 Identities=26% Similarity=0.261 Sum_probs=55.8
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecccc
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA 419 (506)
+|.||.--...|-..|+.. +...+.|.+. .+.|||+... +-|. +|++.++..|+|++++++=-+
T Consensus 145 ~~~vmPlg~pIGsg~gi~~-~~~i~~i~e~---~~vpVIveaG---------I~tp---eda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 145 CAAVMPLGAPIGSGLGLLN-PYNLRIIIEQ---ADVPVIVDAG---------IGTP---SDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---cCCeEEEeCC---------CCCH---HHHHHHHHcCCCEEEEChHhh
Confidence 4555441122223334444 5555555443 4789997642 3333 479999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc
Q 010610 420 HGKFPLKAVKVMHTVSLRTEAT 441 (506)
Q Consensus 420 ~G~yPveaV~~m~~I~~~aE~~ 441 (506)
..+.|..-.+.+..-++.-...
T Consensus 209 ka~dP~~ma~af~~Av~aGr~a 230 (250)
T PRK00208 209 VAGDPVAMARAFKLAVEAGRLA 230 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 8889988888777776555544
No 355
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=50.38 E-value=64 Score=34.76 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCCccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEc---cCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHH
Q 010610 258 SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVS---FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLH 334 (506)
Q Consensus 258 s~KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalS---fV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNld 334 (506)
...|=.||+.+++ + ++..+ +.+..|.|.+.-+ -+.|.+|+.++.+.|++.+...+|-.|+=.-..++.+.
T Consensus 148 pG~GG~Lp~~KV~-----~-~ia~~-R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~ 220 (368)
T PF01645_consen 148 PGEGGHLPGEKVT-----E-EIARI-RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIA 220 (368)
T ss_dssp TTT--EE-GGG-------H-HHHHH-HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHH
T ss_pred ccCcceechhhch-----H-HHHHH-hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHH
Confidence 3445667777653 1 22333 3456788877643 47788888888888988888889999987666665555
Q ss_pred HHHHh--CCEEEEcCCCccc---------CCCCCcHHHHHHHHHHHHHHcC---CcEEEEehhhhhhhcCCCCChhhccc
Q 010610 335 SIITA--SDGAMVARGDLGA---------ELPIEEVPLLQEEIIRTCRSMG---KAVIVATNMLESMIVHPTPTRAEVSD 400 (506)
Q Consensus 335 eIl~~--sDGImIaRGDLgv---------elg~e~V~~~Qk~II~~c~~~G---kPvivATqmLeSMi~~~~PtRAEv~D 400 (506)
..+.. +|.|.|.=++=|. +.|++ +.....++.+...+.| +..++++--| .--.|
T Consensus 221 ~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~sGgl-----------~t~~d 288 (368)
T PF01645_consen 221 AGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIASGGL-----------RTGDD 288 (368)
T ss_dssp HHHHHTT-SEEEEE-TT---SSEECCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEESS-------------SHHH
T ss_pred HhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEeCCc-----------cCHHH
Confidence 53322 7999998665443 22222 2233334444444444 3444444333 12358
Q ss_pred HHHHHHhCcceeEee
Q 010610 401 IAIAVREGADAVMLS 415 (506)
Q Consensus 401 vanav~dG~D~vmLs 415 (506)
++.++..|+|++-+.
T Consensus 289 v~kalaLGAD~v~ig 303 (368)
T PF01645_consen 289 VAKALALGADAVYIG 303 (368)
T ss_dssp HHHHHHCT-SEEE-S
T ss_pred HHHHHhcCCCeeEec
Confidence 999999999999774
No 356
>PRK08639 threonine dehydratase; Validated
Probab=50.21 E-value=2.8e+02 Score=29.99 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCccee--EeeccccCCCCHHHHHHHHHHHHHHHhccc
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV--MLSGETAHGKFPLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~v--mLs~ETA~G~yPveaV~~m~~I~~~aE~~~ 442 (506)
-+...|+..|.|+.+. .|..+-...+...-..|++.+ .+. |...-++++.-.+++++- . .
T Consensus 87 alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~~~-----g~~~~~a~~~a~~~a~~~-g-~ 148 (420)
T PRK08639 87 GVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIVLV-----GDTFDDSAAAAQEYAEET-G-A 148 (420)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEEEe-----CcCHHHHHHHHHHHHHhc-C-C
Confidence 4556899999999886 233332233556667899843 342 445567776666655442 2 1
Q ss_pred cCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcC----c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 443 TGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG----T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~----a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
++-..|.+ + ...+.-..-+.++.++++ . .||+..-+|.++ +.+-.++|.+.|+++-+
T Consensus 149 ~~~~~~~~---~---~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep 214 (420)
T PRK08639 149 TFIPPFDD---P---DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEP 214 (420)
T ss_pred cccCCCCC---h---hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 22111211 0 111111222456666663 6 788888888654 44445589999999865
No 357
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=50.20 E-value=4.2e+02 Score=29.85 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=93.0
Q ss_pred CCccCHHHh-HhhHhcCCcEEEEcc-CCCHHHHHHHHHHHHhcCCCceEEEecCC-hhhhh-----hHHHHHHh-CCE--
Q 010610 274 ITEKDWDDI-KFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIES-ADSIP-----NLHSIITA-SDG-- 342 (506)
Q Consensus 274 ltekD~~dI-~~al~~gvD~IalSf-V~saedV~~lr~~l~~~~~~i~IIaKIEt-~~ave-----NldeIl~~-sDG-- 342 (506)
++..++..| +...+.|+|.|=+.| .-++.|.+.++.+....-.+..+.+..=. ...+. .++..+.. .|.
T Consensus 24 ~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i~ 103 (524)
T PRK12344 24 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVVT 103 (524)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEEE
Confidence 344555555 445578999998866 55777877766655321123343332211 11221 22333333 453
Q ss_pred EEEcCCCccc----CCCCCcHHHHHHHHHHHHHHcCCcEEEEeh-hhhhhhcCCCCChhhcccHHH-HHHhCcceeEeec
Q 010610 343 AMVARGDLGA----ELPIEEVPLLQEEIIRTCRSMGKAVIVATN-MLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (506)
Q Consensus 343 ImIaRGDLgv----elg~e~V~~~Qk~II~~c~~~GkPvivATq-mLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ 416 (506)
+++.-.|+-. -+..+++...-++.++.++++|..|-+.+. +.+. .+-+...+.+++. +...|+|.+.| .
T Consensus 104 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da----~r~d~~~l~~~~~~~~~~Gad~i~l-~ 178 (524)
T PRK12344 104 IFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG----YKANPEYALATLKAAAEAGADWVVL-C 178 (524)
T ss_pred EEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc----ccCCHHHHHHHHHHHHhCCCCeEEE-c
Confidence 3433334321 122346777778899999999998765331 1111 1112222445554 44579999998 4
Q ss_pred cccCCCCHHHHHHHHHHHHHHH
Q 010610 417 ETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 417 ETA~G~yPveaV~~m~~I~~~a 438 (506)
+|.=.-+|.+.-+.+..+.+..
T Consensus 179 DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 179 DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred cCCCCcCHHHHHHHHHHHHHhc
Confidence 8988899999999888888765
No 358
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=50.15 E-value=95 Score=31.49 Aligned_cols=99 Identities=20% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHh-CCEEEEcC-CCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhccc-HHHHHHhCc
Q 010610 333 LHSIITA-SDGAMVAR-GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSD-IAIAVREGA 409 (506)
Q Consensus 333 ldeIl~~-sDGImIaR-GDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~D-vanav~dG~ 409 (506)
++-.++. .||++++- .-=+..|..++-..+.+.+++.+ .-..|+++.+. ..+-.|.-+ .-.+...|+
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~-~~~~~vi~gv~---------~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAA-AGRVPVIAGVG---------ANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHH-TTSSEEEEEEE---------SSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHc-cCceEEEecCc---------chhHHHHHHHHHHHhhcCc
Confidence 4445544 89999962 11122333334334444444433 23468887652 223334333 444778899
Q ss_pred ceeEeeccccCCCCHHHHHHHHHHHHHHHhcc
Q 010610 410 DAVMLSGETAHGKFPLKAVKVMHTVSLRTEAT 441 (506)
Q Consensus 410 D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~ 441 (506)
|++|+..=--...-+-+.+++.+.|+..++.-
T Consensus 98 d~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~p 129 (289)
T PF00701_consen 98 DAVLVIPPYYFKPSQEELIDYFRAIADATDLP 129 (289)
T ss_dssp SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSE
T ss_pred eEEEEeccccccchhhHHHHHHHHHHhhcCCC
Confidence 99998765455556778899999999666543
No 359
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=50.06 E-value=86 Score=29.68 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc-CCcEEEEe
Q 010610 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVAT 381 (506)
Q Consensus 304 V~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~-GkPvivAT 381 (506)
++.+++.+.+.+..+.+.+--+.... +|++++++-.|.|+.+-.+ +.....+...|.+. ++|++.+.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEEe
Confidence 66677788888887776654444433 6788888888887766222 34556677777776 99999874
No 360
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=49.95 E-value=1.4e+02 Score=29.73 Aligned_cols=95 Identities=25% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEecCC---hhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc
Q 010610 298 VKDAQVVHELKNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM 373 (506)
Q Consensus 298 V~saedV~~lr~~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~ 373 (506)
.++++.+.++.+.+++. +++|.+||=. .+.++-...+.+. +|+|-+--+.-+ +..++ ..++..+ .
T Consensus 122 l~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g---~~ad~-----~~I~~i~-~ 190 (233)
T cd02911 122 LKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPG---NHADL-----KKIRDIS-T 190 (233)
T ss_pred cCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCC---CCCcH-----HHHHHhc-C
Confidence 34566666666666553 6788888832 1222222222222 687765322222 11122 2334443 5
Q ss_pred CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 374 GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
++|||-.. ..-+ ..|+..++..|+|+||+.
T Consensus 191 ~ipVIgnG---------gI~s---~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 191 ELFIIGNN---------SVTT---IESAKEMFSYGADMVSVA 220 (233)
T ss_pred CCEEEEEC---------CcCC---HHHHHHHHHcCCCEEEEc
Confidence 78987543 2223 346777888999999996
No 361
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=49.60 E-value=3e+02 Score=27.95 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=52.0
Q ss_pred CceEEEec--CChhhhhhHHHHHHh--CCEEEEcCC-----CcccCCCCCcHHHHHHHHHHHHHHc-CCcEEEEehhhhh
Q 010610 317 DIHVIVKI--ESADSIPNLHSIITA--SDGAMVARG-----DLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVATNMLES 386 (506)
Q Consensus 317 ~i~IIaKI--Et~~aveNldeIl~~--sDGImIaRG-----DLgvelg~e~V~~~Qk~II~~c~~~-GkPvivATqmLeS 386 (506)
+.+++++| .+++...+.-..++. +|+|=+-=+ ..|.+++ .-+..-.+++++++++ ++|+++=
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vK------ 160 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVK------ 160 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEE------
Confidence 46788877 455555444444433 688866310 0012222 2245667788888887 8998863
Q ss_pred hhcCCCCChhhcccHHH-HHHhCcceeEee
Q 010610 387 MIVHPTPTRAEVSDIAI-AVREGADAVMLS 415 (506)
Q Consensus 387 Mi~~~~PtRAEv~Dvan-av~dG~D~vmLs 415 (506)
-.|+..|..+++. +...|+|++.+.
T Consensus 161 ----l~~~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 161 ----LTPNVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred ----eCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 1344446667666 556899999875
No 362
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=49.53 E-value=64 Score=27.19 Aligned_cols=55 Identities=22% Similarity=0.453 Sum_probs=38.4
Q ss_pred eEEEeccc-hhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEe-------eCcEeCCCCcccc
Q 010610 208 ECVSVNYD-DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNV 264 (506)
Q Consensus 208 ~~i~v~~~-~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~-------~gG~L~s~KgVnl 264 (506)
..+.+..+ ..+..+.+||.|-+|. +.|.|.++.++.+...+. +=|.++.+.-||+
T Consensus 20 ~~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 20 QRLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp EEEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred EEEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 34555555 7889999999999997 889999999998887663 3344444444554
No 363
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=49.52 E-value=2.3e+02 Score=26.66 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHH-----HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh--CCEEEEcCCCcc
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQ-----VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLG 351 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~sae-----dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDGImIaRGDLg 351 (506)
.+.++.+++.|+++|.+-.-...+ .+.+++.+++..+....+ .+--+++.. +||+-++.+|+.
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i----------~~~~~la~~~g~~GvHl~~~~~~ 85 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIV----------NDRVDLALALGADGVHLGQDDLP 85 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEE----------ECHHHHHHHcCCCEEecCcccCC
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeE----eeccccCCCCHHHH
Q 010610 352 AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVM----LSGETAHGKFPLKA 427 (506)
Q Consensus 352 velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vm----Ls~ETA~G~yPvea 427 (506)
....+.....++.+++.++=.+. +..+...|+|.++ +...|-.+..|..-
T Consensus 86 ------------~~~~r~~~~~~~~ig~s~h~~~e--------------~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g 139 (196)
T TIGR00693 86 ------------ASEARALLGPDKIIGVSTHNLEE--------------LAEAEAEGADYIGFGPIFPTPTKKDPAPPAG 139 (196)
T ss_pred ------------HHHHHHhcCCCCEEEEeCCCHHH--------------HHHHhHcCCCEEEECCccCCCCCCCCCCCCC
Q ss_pred HHHHHHHHHH
Q 010610 428 VKVMHTVSLR 437 (506)
Q Consensus 428 V~~m~~I~~~ 437 (506)
++.+..++..
T Consensus 140 ~~~l~~~~~~ 149 (196)
T TIGR00693 140 VELLREIAAT 149 (196)
T ss_pred HHHHHHHHHh
No 364
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=49.46 E-value=2.6e+02 Score=29.66 Aligned_cols=131 Identities=20% Similarity=0.158 Sum_probs=0.0
Q ss_pred CccCCCCCCccCHHHhHhhHh-cCCcEEEEccCC-----------CH----HHHHHHHHHHHhcCCCceEEEecC-Chhh
Q 010610 267 KSATLPSITEKDWDDIKFGVD-NKVDFYAVSFVK-----------DA----QVVHELKNYLKSCGADIHVIVKIE-SADS 329 (506)
Q Consensus 267 ~~~~lp~ltekD~~dI~~al~-~gvD~IalSfV~-----------sa----edV~~lr~~l~~~~~~i~IIaKIE-t~~a 329 (506)
.++..+.+..++.+++..+++ .++|.+.+-.-. +- +.++++++.+ +++|++|+= +...
T Consensus 125 aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-----~vPVivK~~g~g~s 199 (352)
T PRK05437 125 ANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-----PVPVIVKEVGFGIS 199 (352)
T ss_pred eecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-----CCCEEEEeCCCCCc
Q ss_pred hhhHHHHHHh-CCEEEEcCCCcc---------------cCCCCCcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCC
Q 010610 330 IPNLHSIITA-SDGAMVARGDLG---------------AELPIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHP 391 (506)
Q Consensus 330 veNldeIl~~-sDGImIaRGDLg---------------velg~e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~ 391 (506)
.+....+.+. +|+|-|+-.- | ..-...+.....-..+..++++ +.|+|...
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~G-Gt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~G---------- 268 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAG-GTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASG---------- 268 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCC-CCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEEC----------
Q ss_pred CCChhhcccHHHHHHhCcceeEee
Q 010610 392 TPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 392 ~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
--....|+..++..|+|++++.
T Consensus 269 --GI~~~~dv~k~l~~GAd~v~ig 290 (352)
T PRK05437 269 --GIRNGLDIAKALALGADAVGMA 290 (352)
T ss_pred --CCCCHHHHHHHHHcCCCEEEEh
No 365
>PRK07048 serine/threonine dehydratase; Validated
Probab=49.35 E-value=2.5e+02 Score=28.98 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+.+.. |..+.-.-+...-..|++.+...+ +.-++.+...++.++- ..++
T Consensus 86 alA~~a~~~G~~~~vvv-----------p~~~~~~k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~~--g~~~ 146 (321)
T PRK07048 86 AIALSARLLGIPATIVM-----------PQDAPAAKVAATRGYGGEVVTYDR------YTEDREEIGRRLAEER--GLTL 146 (321)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHhc--CCEE
Confidence 34568999999998763 221111235556678999777642 3345555444444331 1111
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHhh----CCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSHY----RPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA~~lS~~----RP~~pIia~T~ 505 (506)
...|.+ .+........+.++.++++. .||+..-+|.|.--++++ +|.+.|+++-+
T Consensus 147 ~~~~~~------~~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep 207 (321)
T PRK07048 147 IPPYDH------PHVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEP 207 (321)
T ss_pred ECCCCC------cchhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEee
Confidence 111111 01111112234566677754 889988899886555554 79999999875
No 366
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=49.10 E-value=30 Score=37.90 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=42.1
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHH
Q 010610 114 CTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEY 159 (506)
Q Consensus 114 ~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~ 159 (506)
+.||-.-++.+.+.-|.++|+|+.=|.-|.|+-.+..++|+.||+-
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5678888899999999999999999999999999999999999964
No 367
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=48.52 E-value=2.1e+02 Score=27.24 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=60.6
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCCCcccC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAE 353 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRGDLgve 353 (506)
+.++++.+++.|+|+|..|--. .+ +.++.+.. ...++. ++.+++|+.++ +|.|.+-+.+
T Consensus 65 ~~~~~~~a~~~Ga~~i~~p~~~--~~---~~~~~~~~--~~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~~---- 127 (190)
T cd00452 65 TPEQADAAIAAGAQFIVSPGLD--PE---VVKAANRA--GIPLLP------GVATPTEIMQALELGADIVKLFPAE---- 127 (190)
T ss_pred CHHHHHHHHHcCCCEEEcCCCC--HH---HHHHHHHc--CCcEEC------CcCCHHHHHHHHHCCCCEEEEcCCc----
Confidence 4567888899999999887432 23 33333332 345655 44466666554 7999885421
Q ss_pred CCCCcHHHHHHHHHHHHHHc-CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccc
Q 010610 354 LPIEEVPLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 418 (506)
Q Consensus 354 lg~e~V~~~Qk~II~~c~~~-GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ET 418 (506)
.. -+...+.+ +... +.|++.... . + ..++..+...|+|++..++-.
T Consensus 128 --~~-g~~~~~~l---~~~~~~~p~~a~GG---------I-~---~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 128 --AV-GPAYIKAL---KGPFPQVRFMPTGG---------V-S---LDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred --cc-CHHHHHHH---HhhCCCCeEEEeCC---------C-C---HHHHHHHHHCCCEEEEEchhc
Confidence 11 12222222 2222 467665432 1 1 235778999999999987443
No 368
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=48.43 E-value=3.1e+02 Score=27.88 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=79.4
Q ss_pred CccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEE---------------------ccCCCH----HHHHHHHHHHHh-
Q 010610 260 RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAV---------------------SFVKDA----QVVHELKNYLKS- 313 (506)
Q Consensus 260 KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~Ial---------------------SfV~sa----edV~~lr~~l~~- 313 (506)
+|+.|++--.--|.+..+..+.+++..+.|+++|.. .++++- .......+.+..
T Consensus 6 ~g~~l~npi~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~ 85 (300)
T TIGR01037 6 FGIRFKNPLILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPV 85 (300)
T ss_pred CCEECCCCCEeCCcCCCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHH
Confidence 356666543322323345666777777889999888 111110 012222222221
Q ss_pred -cCCCceEEEec--CChhhhhhHHHHHHh----CCEEEEcCCCcccCCCC--------CcHHHHHHHHHHHHHHc-CCcE
Q 010610 314 -CGADIHVIVKI--ESADSIPNLHSIITA----SDGAMVARGDLGAELPI--------EEVPLLQEEIIRTCRSM-GKAV 377 (506)
Q Consensus 314 -~~~~i~IIaKI--Et~~aveNldeIl~~----sDGImIaRGDLgvelg~--------e~V~~~Qk~II~~c~~~-GkPv 377 (506)
...+.+++++| .+++.+...-++++. +|+|=+. +.+|. ..-+..-.+|+++.++. ++|+
T Consensus 86 ~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN-----~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv 160 (300)
T TIGR01037 86 REEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELN-----LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPV 160 (300)
T ss_pred hccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEE-----CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCE
Confidence 12245799998 566666655555552 5776653 22222 12344557778777765 8898
Q ss_pred EEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeec
Q 010610 378 IVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (506)
Q Consensus 378 ivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ 416 (506)
.+=. .|+-.|..+++. +...|+|++.+++
T Consensus 161 ~vKi----------~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 161 FAKL----------SPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred EEEC----------CCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 8642 244455666665 4567999999863
No 369
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=48.42 E-value=2.3e+02 Score=29.46 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=76.0
Q ss_pred CceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh----hhhhcCC
Q 010610 317 DIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML----ESMIVHP 391 (506)
Q Consensus 317 ~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL----eSMi~~~ 391 (506)
.++|...+.....++.+..-++. .+-||+.. -.+|+++=...-+++++.|++.|.+|=-=-..+ +.....
T Consensus 77 ~vPV~lHLDHg~~~e~i~~ai~~GftSVM~Dg----S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~- 151 (286)
T PRK08610 77 TIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDA----SHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD- 151 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc-
Confidence 36888888888766555554444 57899973 346888888888999999999999862100000 100000
Q ss_pred CCChhhcccHHHHHHh-CcceeEeeccccCCCC---HHHHHHHHHHHHHHH
Q 010610 392 TPTRAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (506)
Q Consensus 392 ~PtRAEv~Dvanav~d-G~D~vmLs~ETA~G~y---PveaV~~m~~I~~~a 438 (506)
.-......+...|+.. |+|++-.|-=|+.|.| |--=.+.+.+|....
T Consensus 152 ~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 152 GIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred ccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
Confidence 0001122345567754 9999999999999999 544566677775544
No 370
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=48.40 E-value=2.9e+02 Score=27.47 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=74.4
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH---h-CCEEEEcCCCcccCCCC
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT---A-SDGAMVARGDLGAELPI 356 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~---~-sDGImIaRGDLgvelg~ 356 (506)
+++.|++.++|+|-++.- -..+..+++++. .+..|=. +..+++|..+ . +|.|.+|+=-=. +...
T Consensus 73 ~~dlA~~~~AdGVHlGq~--D~~~~~ar~~~~---~~~iIG~------S~h~~eea~~A~~~g~DYv~~GpifpT-~tK~ 140 (211)
T COG0352 73 RVDLALAVGADGVHLGQD--DMPLAEARELLG---PGLIIGL------STHDLEEALEAEELGADYVGLGPIFPT-STKP 140 (211)
T ss_pred cHHHHHhCCCCEEEcCCc--ccchHHHHHhcC---CCCEEEe------ecCCHHHHHHHHhcCCCEEEECCcCCC-CCCC
Confidence 345677889999999853 345556666653 2222212 2234444444 3 799999863111 1100
Q ss_pred CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHH
Q 010610 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~ 436 (506)
..-+.-.+.+-+..+...+|++.-.. -.|.+ +......|+|+|-+........-|-.+++-+.+...
T Consensus 141 ~~~~~G~~~l~~~~~~~~iP~vAIGG--------i~~~n-----v~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~ 207 (211)
T COG0352 141 DAPPLGLEGLREIRELVNIPVVAIGG--------INLEN-----VPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE 207 (211)
T ss_pred CCCccCHHHHHHHHHhCCCCEEEEcC--------CCHHH-----HHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHH
Confidence 01111111111233333499775542 23333 567788899999877666668888888888877664
Q ss_pred H
Q 010610 437 R 437 (506)
Q Consensus 437 ~ 437 (506)
.
T Consensus 208 ~ 208 (211)
T COG0352 208 D 208 (211)
T ss_pred h
Confidence 3
No 371
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=48.38 E-value=46 Score=33.22 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=38.1
Q ss_pred hHhhHhcCCcEEEEccCCC--HHHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHh-CCEEEEcCC
Q 010610 282 IKFGVDNKVDFYAVSFVKD--AQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVARG 348 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~s--aedV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDGImIaRG 348 (506)
.+...+.|+|+|.++--.. ..|...+++.- .+++||+ -|.|.+-. .+.+.. +|+|||||+
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~eda---~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIESA---KEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHHH---HHHHHcCCCEEEEcCC
Confidence 3556789999987653332 33555555542 3577887 46665443 334444 999999999
No 372
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=48.36 E-value=1.1e+02 Score=35.57 Aligned_cols=258 Identities=14% Similarity=0.171 Sum_probs=137.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCChH-HH---HHHHHHHH-HHHHhcCCceEEEEeecCCCeeEEeccCCCeEecCCCEEE
Q 010610 123 REMIWKLAEAGMNVARLNMSHGDHA-SH---QKVIDLVK-EYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFT 197 (506)
Q Consensus 123 ~e~i~~li~aGm~v~RiN~SHg~~e-~~---~~~i~~ir-~~~~~~~~~~i~Il~DL~GPkIRtG~l~~~i~Lk~G~~v~ 197 (506)
..+|+.|++.|..+.- +||-..- .. .--++.+- ..++.++ ++|...=|.-||+.+- .--.|++|+.+.
T Consensus 42 lpTI~~l~~~gakvvl--~SH~gRP~~~~~~~~SL~~va~~L~~~L~-~~V~f~~d~~g~~~~~----~i~~l~~GeilL 114 (645)
T PRK13962 42 LPTIKYLLDHGAKVIL--VSHLGRPKGEFDPKFSMAPVAKRLSELLG-KEVIFAKDVIGDDAKK----AVAQLKEGDVLL 114 (645)
T ss_pred HHHHHHHHhCCCeEEE--EEecCCCCCCcCccCCHHHHHHHHHHHHC-CCeEECCCCCCHHHHH----HHhcCCCCcEEE
Confidence 3489999999998765 5876431 10 11222222 2344456 8888888888876541 012578888887
Q ss_pred EEEecCCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCccccCCCccCCCCCCcc
Q 010610 198 FTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEK 277 (506)
Q Consensus 198 lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlp~~~~~lp~ltek 277 (506)
|-.-+....++. |.++|.+.+-.---||++|.-=... |+.-.+ ..+|.+-+
T Consensus 115 LEN~Rf~~~E~~---~d~~~~~~LA~l~DvyVNDAFg~aH---------------------R~haS~----~gi~~~lp- 165 (645)
T PRK13962 115 LENVRFHKEETK---NDPEFAKELASLADIYVNDAFGTAH---------------------RAHAST----AGVAEYLP- 165 (645)
T ss_pred EeccCcCccccc---CHHHHHHHHHHhCCEEEechhhhhh---------------------hcccch----hhhhhhhh-
Confidence 765543332221 4567877776644588888421000 000000 00111000
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCC-ceEE--EecCChhhhhhHHHHHHhCCEEEEcCC------
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD-IHVI--VKIESADSIPNLHSIITASDGAMVARG------ 348 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~-i~II--aKIEt~~aveNldeIl~~sDGImIaRG------ 348 (506)
...-+.+ ..++..+.+.+..-... +.|+ +|+.+.-.+ |+.++..+|.+++|=|
T Consensus 166 --~~aG~lm--------------ekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~v--l~~ll~~~D~iligG~ma~tFl 227 (645)
T PRK13962 166 --AVAGFLM--------------EKEIEFLGKALANPQRPFVAILGGAKVSDKIGV--IENLLEKVDKLLIGGGMAYTFL 227 (645)
T ss_pred --hhhhHHH--------------HHHHHHHHHHHcCCCCceEEEEcCccHHhHHHH--HHHHHHhCCEEEECcHHHHHHH
Confidence 0111222 24566666666432221 2233 488776555 7778888999999832
Q ss_pred -CcccCCCC----CcHHHHHHHHHHHHHHcCCcEEEEehhhhhh-hcCCCCChhhcccHHHHHHhCcceeEeeccccCCC
Q 010610 349 -DLGAELPI----EEVPLLQEEIIRTCRSMGKAVIVATNMLESM-IVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 422 (506)
Q Consensus 349 -DLgvelg~----e~V~~~Qk~II~~c~~~GkPvivATqmLeSM-i~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~ 422 (506)
-.|.++|. ++....-++|+.+++..|+.+++-+...-.= .+...++ +..++ +.+- .|...|- +|.
T Consensus 228 ~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~lPvD~~~~~~~~~~~~~--~~~~~-~~ip--~~~~~lD----IGp 298 (645)
T PRK13962 228 KAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEH--KVVPS-DAIP--EDWMGLD----IGP 298 (645)
T ss_pred HHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEECCcEEEeecccCCCCce--EEEec-ccCC--CCCEEEe----eCH
Confidence 23444443 2455566799999999999877433221000 0001111 11111 1122 1223332 443
Q ss_pred CHHHHHHHHHHHHHHHhccccCCC
Q 010610 423 FPLKAVKVMHTVSLRTEATITGGA 446 (506)
Q Consensus 423 yPveaV~~m~~I~~~aE~~~~~~~ 446 (506)
++++...+++..+...+|.-.
T Consensus 299 ---~Ti~~~~~~i~~akti~wNGP 319 (645)
T PRK13962 299 ---ETIELFAKKIADAKTIVWNGP 319 (645)
T ss_pred ---HHHHHHHHHHhhCCEEEEECC
Confidence 788899999999988888643
No 373
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=48.11 E-value=2.6e+02 Score=28.98 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChh---hcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhcc
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRA---EVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEAT 441 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRA---Ev~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~ 441 (506)
-+...|+..|.++++... ....+... .-......-..|+..+....+ .+..++.+ ..+++....
T Consensus 80 alA~~a~~~G~~~~i~vp------~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~----~~~~~~~~---~~a~~l~~~ 146 (331)
T PRK03910 80 QTAAAAAKLGLKCVLLLE------NPVPTEAENYLANGNVLLDDLFGAEIHVVPAG----TDMDAQLE---ELAEELRAQ 146 (331)
T ss_pred HHHHHHHHhCCcEEEEEc------CCCCcccccccCCCcHHHHHHcCCEEEEeCcc----chHHHHHH---HHHHHHHHc
Confidence 455689999999988631 11111110 012234566789998877643 33333322 222222211
Q ss_pred ccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcC-----c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 442 ITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-----T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-----a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
.+.....++ +.......+....-+.++.++++ . .||+..-+|.|+ +.+-.++|.++|+++-+
T Consensus 147 ~~~~~~~~~--~~~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 147 GRRPYVIPV--GGSNALGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred CCceEEECC--CCCCchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 100000000 00100111221123445656553 4 889998899987 55555679999999865
No 374
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=48.09 E-value=1.7e+02 Score=32.42 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcC-------C
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR-------G 348 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaR-------G 348 (506)
.+++.|++.|+|+|-++ +.--....+|..+ +....|=. +..+.+|+..+ +|.|.+|+ -
T Consensus 268 D~~dlAl~~gAdGVHLG--QeDL~~~~aR~il---g~~~iIGv------StHs~eEl~~A~~~gaDYI~lGPIFpT~TK~ 336 (437)
T PRK12290 268 DYWQLAIKHQAYGVHLG--QEDLEEANLAQLT---DAGIRLGL------STHGYYELLRIVQIQPSYIALGHIFPTTTKQ 336 (437)
T ss_pred CHHHHHHHcCCCEEEcC--hHHcchhhhhhhc---CCCCEEEE------ecCCHHHHHHHhhcCCCEEEECCccCCCCCC
Q ss_pred CcccCCCCCcHHHHHHHH--HHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHH
Q 010610 349 DLGAELPIEEVPLLQEEI--IRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLK 426 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~I--I~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPve 426 (506)
+-..-+|++.+..+++.+ +..++..++|++--..+=.+ ++......|+|++-....-..-+.|.+
T Consensus 337 ~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~-------------Ni~~vl~aGa~GVAVVSAI~~A~DP~a 403 (437)
T PRK12290 337 MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQS-------------NAEQVWQCGVSSLAVVRAITLAEDPQL 403 (437)
T ss_pred CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHH-------------HHHHHHHcCCCEEEEehHhhcCCCHHH
Q ss_pred HHHHHHHHHHH
Q 010610 427 AVKVMHTVSLR 437 (506)
Q Consensus 427 aV~~m~~I~~~ 437 (506)
+++.+.++...
T Consensus 404 a~~~l~~~~~~ 414 (437)
T PRK12290 404 VIEFFDQVMAE 414 (437)
T ss_pred HHHHHHHHHhh
No 375
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=48.08 E-value=69 Score=32.05 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
-++.+++.+.+.|.++.|.+.-+... -+|+++++.. .|.|+.+=. . ......+.+.|++.++|+|.+.
T Consensus 66 Kae~~~~~l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD---------~-~~~k~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 66 KVEVMAERIRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAID---------S-IRAKVALIAYCRKRKIPVISSM 134 (231)
T ss_pred HHHHHHHHHHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCC---------C-HHHHHHHHHHHHHhCCCEEEEe
Confidence 45566777888888776655433322 2578888753 687777622 2 3355678999999999999763
Q ss_pred hhhhhhhcCCCCChhhcccHHH
Q 010610 382 NMLESMIVHPTPTRAEVSDIAI 403 (506)
Q Consensus 382 qmLeSMi~~~~PtRAEv~Dvan 403 (506)
..-....||+-++.|++.
T Consensus 135 ----g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 135 ----GAGGKLDPTRIRVADISK 152 (231)
T ss_pred ----CCcCCCCCCeEEEccEec
Confidence 222345799999998855
No 376
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=47.99 E-value=3e+02 Score=27.49 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=64.0
Q ss_pred HHHhHhhHhcCCcEEEEccC----------CCHHHHHHHHHHHHhcCCCceEEEe-------cCC------hhhhhhHHH
Q 010610 279 WDDIKFGVDNKVDFYAVSFV----------KDAQVVHELKNYLKSCGADIHVIVK-------IES------ADSIPNLHS 335 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV----------~saedV~~lr~~l~~~~~~i~IIaK-------IEt------~~aveNlde 335 (506)
.+.++.+.+.|.|+|=++.- .+.+++.++++.+++.|-.+.-+.- +-+ .++++.+..
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~ 98 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEK 98 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHH
Confidence 34567888999999977521 1477889999999988876543320 111 134555655
Q ss_pred HHHh-----CCEEEEcCCCcccCCC----CCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 336 IITA-----SDGAMVARGDLGAELP----IEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 336 Il~~-----sDGImIaRGDLgvelg----~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
.++. ++.|.+.-++....-. ++.+....+++...|.++|..+.+=
T Consensus 99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 99 AIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 5554 5677665443221111 1245556678888999999987764
No 377
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=47.74 E-value=2.2e+02 Score=29.57 Aligned_cols=129 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEeh
Q 010610 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 304 V~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATq 382 (506)
+..++.+.++. .++|...+....-++.+..-++. .+-||+. |-.+|+++=...-+++++.|+..|..|=-==.
T Consensus 63 ~~~~~~~A~~~--~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG 136 (284)
T PRK09195 63 LAIVSAAAKQY--HHPLALHLDHHEKFDDIAQKVRSGVRSVMID----GSHLPFAQNISLVKEVVDFCHRFDVSVEAELG 136 (284)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Q ss_pred hhhhhhcC-----CCCChhhcccHHHHHHh-CcceeEeeccccCCCC---HHHHHHHHHHHHHHH
Q 010610 383 MLESMIVH-----PTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (506)
Q Consensus 383 mLeSMi~~-----~~PtRAEv~Dvanav~d-G~D~vmLs~ETA~G~y---PveaV~~m~~I~~~a 438 (506)
.+..-... ..-......+...|+.. |+|++-.|-=|+.|.| |---...+.+|.+..
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 137 RLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred cccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 378
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=47.63 E-value=1.1e+02 Score=30.12 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=41.7
Q ss_pred CHHHhHhhHhcCCcEEEEccCC---CHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEcCCC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVK---DAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVARGD 349 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~---saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIaRGD 349 (506)
..+++..+.+.|+|+|.+ |=. ..+.++.++..+ ..++++++- -|+ +|+.+.++. +|++-++.+=
T Consensus 113 t~~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~---~~~ipvvai----GGI~~~n~~~~~~aGa~~vav~s~l 182 (206)
T PRK09140 113 TPTEAFAALRAGAQALKL-FPASQLGPAGIKALRAVL---PPDVPVFAV----GGVTPENLAPYLAAGAAGFGLGSAL 182 (206)
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhc---CCCCeEEEE----CCCCHHHHHHHHHCCCeEEEEehHh
Confidence 346678889999999987 322 244444444433 224666652 233 899999988 8999887543
No 379
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=47.59 E-value=49 Score=34.67 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=39.7
Q ss_pred HhHhhHhcCCcEEEEccCCCH---------------HHHHHHHHHHHhcCCCceEEEe--cCChhhhhhHHHHHHhCCEE
Q 010610 281 DIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITASDGA 343 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~sa---------------edV~~lr~~l~~~~~~i~IIaK--IEt~~aveNldeIl~~sDGI 343 (506)
.++.+.+.|+|.|.+. -|++ -+...++++-+. -.+++||+- |.|.+ .+.+.+.-+|||
T Consensus 146 ~~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~-~~~ipVi~NGdI~s~~---da~~~l~g~dgV 220 (318)
T TIGR00742 146 FVEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKD-FPHLTIEINGGIKNSE---QIKQHLSHVDGV 220 (318)
T ss_pred HHHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHh-CCCCcEEEECCcCCHH---HHHHHHhCCCEE
Confidence 3455668899998665 4443 133444443322 235777773 55543 334455569999
Q ss_pred EEcCCCcc
Q 010610 344 MVARGDLG 351 (506)
Q Consensus 344 mIaRGDLg 351 (506)
|||||=|+
T Consensus 221 MigRgal~ 228 (318)
T TIGR00742 221 MVGREAYE 228 (318)
T ss_pred EECHHHHh
Confidence 99999886
No 380
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=47.48 E-value=55 Score=35.42 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=43.9
Q ss_pred CHHHhHhhHhcCCcEEEEccC---------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEE
Q 010610 278 DWDDIKFGVDNKVDFYAVSFV---------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAM 344 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV---------~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGIm 344 (506)
+.+|.+.+++.|+|+|.+|-- .+.+-+.++++.+ +.++.||+ -.||.|=.+|+++ +|+++
T Consensus 263 ~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~---~~~~~vi~----dGGIr~G~Dv~KALaLGA~~v~ 335 (383)
T cd03332 263 HPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV---GDRLTVLF----DSGVRTGADIMKALALGAKAVL 335 (383)
T ss_pred CHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh---cCCCeEEE----eCCcCcHHHHHHHHHcCCCEEE
Confidence 456777888999999998854 1333444444444 44566766 3466666666665 79999
Q ss_pred EcCCCc
Q 010610 345 VARGDL 350 (506)
Q Consensus 345 IaRGDL 350 (506)
+||.=|
T Consensus 336 iGr~~l 341 (383)
T cd03332 336 IGRPYA 341 (383)
T ss_pred EcHHHH
Confidence 998765
No 381
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=47.45 E-value=2.6e+02 Score=29.11 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|++.|.++.+... .+..+ +. .....-..|++..+...+...+ ..-.+.+....+..+-...++.
T Consensus 86 alA~~a~~~G~~~~ivvp------~~~~~---~~-~~~l~~~~Ga~v~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 154 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLR------GKEEL---KG-NYLLDKIMGIETRVYEAKDSFE-LMKYAEEVAEELKGEGRKPYII 154 (329)
T ss_pred HHHHHHHHcCCeEEEEEe------CCCCC---Cc-CHHHHHHCCCEEEEECCCcccc-hHHHHHHHHHHHHhcCCCEEEE
Confidence 456789999999887642 11111 11 1122235788877654221111 1123333333333221111111
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC-----c-eEEEEcCChHHHHHHHhh----CCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-----T-SIVVFTRTGFMAILLSHY----RPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-----a-~Iiv~T~sG~tA~~lS~~----RP~~pIia~T~ 505 (506)
. +.. ....-.......+.++.++++ . .||+.+-||.|+--++++ .|.+.|+++-+
T Consensus 155 p----~~~--~n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~ 219 (329)
T PRK14045 155 P----PGG--ASPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAV 219 (329)
T ss_pred C----CCC--CchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 1 100 111122333444457766653 4 799999999988655554 59999999865
No 382
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=47.42 E-value=1.1e+02 Score=31.21 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=53.1
Q ss_pred HHHHHHh--CCEEEEcCCCcc--cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhccc-HHHHHHh
Q 010610 333 LHSIITA--SDGAMVARGDLG--AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSD-IAIAVRE 407 (506)
Q Consensus 333 ldeIl~~--sDGImIaRGDLg--velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~D-vanav~d 407 (506)
++..++. +||+++. |=-| ..+..++-..+-+..++.+. -..|+|+-+ ...+-.|..+ ...+...
T Consensus 27 i~~l~~~~Gv~gi~~~-GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viagv---------~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 27 VDYLIEKQGVDGLYVN-GSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAHV---------GSLNLKESQELAKHAEEL 95 (288)
T ss_pred HHHHHhcCCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEecc---------CCCCHHHHHHHHHHHHHc
Confidence 3445555 7999886 2111 22222232223333333332 235777643 1223344444 4468889
Q ss_pred CcceeEeeccccCCCCHHHHHHHHHHHHHHH
Q 010610 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 408 G~D~vmLs~ETA~G~yPveaV~~m~~I~~~a 438 (506)
|+|++|+..--....-+-+.++....|+..+
T Consensus 96 Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 96 GYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999998655444444578899999998876
No 383
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=47.25 E-value=3.3e+02 Score=27.82 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.++.+... ..+. ......-.-..|++.++...+ .| .++.+...+++++.++....
T Consensus 72 alA~~a~~~G~~~~ivvp---------~~~~-~~~~~~~~~~~Ga~v~~v~~~----~~-~~~~~~~~~~~~~~~~~~~~ 136 (311)
T TIGR01275 72 ATALAAKKLGLDAVLVLR---------EKEE-LNGNLLLDKLMGAETRVYSAE----EY-FEIMKYAEELAEELEKEGRK 136 (311)
T ss_pred HHHHHHHHhCCceEEEec---------CCcc-CCCCHHHHHHcCCEEEEECch----hh-hhhHHHHHHHHHHHHhcCCC
Confidence 345689999999888631 1100 011122235789998877532 12 12234444555544332100
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC----c-eEEEEcCChHHHHHHHh----hCCCCeEEEEe
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG----T-SIVVFTRTGFMAILLSH----YRPSGTIFAFT 504 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~----a-~Iiv~T~sG~tA~~lS~----~RP~~pIia~T 504 (506)
...+++ +.....-.+.....+.++.++++ . .||+..-||.|+--+++ ++|.++|+++-
T Consensus 137 ~~~~p~--~~~~~~~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~ 203 (311)
T TIGR01275 137 PYVIPV--GGSNSLGTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVA 203 (311)
T ss_pred eEEECC--CCCcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 000010 10110111222223566777763 5 89999999988765544 48999999874
No 384
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=47.20 E-value=1e+02 Score=29.25 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCeeeecCCCCccccccccccccccccccccccccccCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCC
Q 010610 66 EPEVVPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGD 145 (506)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~ 145 (506)
.++-.|++|+..+.|+++|+||.. .|+.. -+||+
T Consensus 25 ~~~~~~lT~~G~~~L~~El~~L~~-----------------------------------~i~~A-----------r~~GD 58 (160)
T PRK06342 25 SPHPNLVTEAGLKALEDQLAQARA-----------------------------------AYEAA-----------QAIED 58 (160)
T ss_pred CCCCceECHHHHHHHHHHHHHHHH-----------------------------------HHHHH-----------HHCCC
Confidence 455578999999999999998861 11111 14444
Q ss_pred hH----HHHHHHHHHHHHHHhcCCceEEEEeecCCC--eeEEeccCCCeEe--cCCCEEEEEEe---cCCCCceEEEecc
Q 010610 146 HA----SHQKVIDLVKEYNAQSKDNVIAIMLDTKGP--EVRSGDLPQPITL--TSGQEFTFTIQ---RGVGSAECVSVNY 214 (506)
Q Consensus 146 ~e----~~~~~i~~ir~~~~~~~~~~i~Il~DL~GP--kIRtG~l~~~i~L--k~G~~v~lt~~---~~~~~~~~i~v~~ 214 (506)
.. ....+-..||+..+.+. + +-++|...| +++.|.. +.| ..|++.++++- ......+.|++..
T Consensus 59 lsEak~~~~~~e~rI~~L~~~L~-~--A~Ii~~~~~~d~V~~Gs~---V~l~~~~~~~~~~~IVg~~Ead~~~g~IS~~S 132 (160)
T PRK06342 59 VNERRRQMARPLRDLRYLAARRR-T--AQLMPDPASTDVVAFGST---VTFSRDDGRVQTYRIVGEDEADPKAGSISYVS 132 (160)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc-c--CEEECCCCCCCEEEeCcE---EEEEECCCCEEEEEEEChHHhCcCCCcccccC
Confidence 32 22333356777777765 2 334454433 6666654 333 45676666532 1112345677765
Q ss_pred ch--hhhhcCCCCEEEEeCCeEEEEEEEE
Q 010610 215 DD--FVNDVEVGDMLLVDGGMMSLLVKSK 241 (506)
Q Consensus 215 ~~--l~~~v~~Gd~IliDDG~i~l~V~~~ 241 (506)
|- -+-.-++||.|.+ |...++|.++
T Consensus 133 PlG~ALlGk~vGD~V~v--~~~~~eI~~I 159 (160)
T PRK06342 133 PVARALMGKAVGDVVSV--GGQELEIIAI 159 (160)
T ss_pred HHHHHHcCCCCCCEEEE--CCEEEEEEEe
Confidence 42 2224489999999 5677777765
No 385
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.15 E-value=2.5e+02 Score=28.70 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred cCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhhHHHHHHh---CCEEEEcCCCc
Q 010610 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA---SDGAMVARGDL 350 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~---sDGImIaRGDL 350 (506)
.|..+++++.+. +|++.++= ++.++..-++. +.. ...+|+.|== +.+-+.+.-+.+.. -+.+++=||--
T Consensus 99 ~d~~~~~~l~~~-vd~~kIga-~~~~n~~LL~~-~a~--~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~ 173 (266)
T PRK13398 99 MDTRDVEEVADY-ADMLQIGS-RNMQNFELLKE-VGK--TKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIR 173 (266)
T ss_pred CChhhHHHHHHh-CCEEEECc-ccccCHHHHHH-Hhc--CCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 466677777777 88877762 33333333332 232 2445665533 22233333333332 36788888864
Q ss_pred cc-CCCCCcHHHHHHHHHHHHH-HcCCcEEE-EehhhhhhhcCCCCChhh--cccHHHHHHhCcceeEe
Q 010610 351 GA-ELPIEEVPLLQEEIIRTCR-SMGKAVIV-ATNMLESMIVHPTPTRAE--VSDIAIAVREGADAVML 414 (506)
Q Consensus 351 gv-elg~e~V~~~Qk~II~~c~-~~GkPviv-ATqmLeSMi~~~~PtRAE--v~Dvanav~dG~D~vmL 414 (506)
.. .++.+ .+.-..+...+ ..+.||++ +++-. .+.| ......|+..|+|++|+
T Consensus 174 t~~~Y~~~---~vdl~~i~~lk~~~~~pV~~D~sHs~---------G~~~~v~~~~~aAva~Ga~Gl~i 230 (266)
T PRK13398 174 TFETYTRN---TLDLAAVAVIKELSHLPIIVDPSHAT---------GRRELVIPMAKAAIAAGADGLMI 230 (266)
T ss_pred CCCCCCHH---HHHHHHHHHHHhccCCCEEEeCCCcc---------cchhhHHHHHHHHHHcCCCEEEE
Confidence 34 33422 23333333333 45899998 66432 1111 22355689999999997
No 386
>PRK06110 hypothetical protein; Provisional
Probab=46.93 E-value=2.8e+02 Score=28.72 Aligned_cols=114 Identities=12% Similarity=-0.018 Sum_probs=66.5
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+..|.++.+.. |..+.. .-....-..|++.+.. |....++++...+..++- ..++..
T Consensus 85 lA~~a~~~G~~~~ivv---------p~~~~~--~k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~~-~~~~~~ 146 (322)
T PRK06110 85 VAFAARRHGLAATIVV---------PHGNSV--EKNAAMRALGAELIEH------GEDFQAAREEAARLAAER-GLHMVP 146 (322)
T ss_pred HHHHHHHcCCCEEEEE---------cCCCCH--HHHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHhc-CCEEcC
Confidence 3458999999998872 111111 1244566789997654 233456766655554431 111111
Q ss_pred CCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHH----hhCCCCeEEEEeC
Q 010610 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLS----HYRPSGTIFAFTN 505 (506)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA~~lS----~~RP~~pIia~T~ 505 (506)
.| .+...+....-+.++.++++. .||+..-+|.+.--++ .++|...|+++-+
T Consensus 147 -~~-------~~~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep 204 (322)
T PRK06110 147 -SF-------HPDLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVS 204 (322)
T ss_pred -CC-------CChHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEee
Confidence 11 112222333345677777754 7888888888766664 4689999999865
No 387
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=46.84 E-value=1.2e+02 Score=29.29 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=58.5
Q ss_pred CCChhhcccHHHHHHhCcceeEeecccc---CCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHH
Q 010610 392 TPTRAEVSDIAIAVREGADAVMLSGETA---HGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHAT 468 (506)
Q Consensus 392 ~PtRAEv~Dvanav~dG~D~vmLs~ETA---~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av 468 (506)
.++..-+..+-.|+.+|+|.+-..---. .|+| -+..+.+..+++.+. ....+-+++ .... + .+.+. .++
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~-g~~lkvI~e---~~~l-~-~~~i~-~a~ 137 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACG-GAPLKVILE---TGLL-T-DEEII-KAC 137 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcC-CCeEEEEEe---cCCC-C-HHHHH-HHH
Confidence 4445557778999999999988643322 3343 567777888877665 211111111 0011 1 24444 567
Q ss_pred HHHhhcCceEEEEcCChHH--------HHHHHhh-CCCCeEEE
Q 010610 469 MMSNTLGTSIVVFTRTGFM--------AILLSHY-RPSGTIFA 502 (506)
Q Consensus 469 ~~A~~~~a~Iiv~T~sG~t--------A~~lS~~-RP~~pIia 502 (506)
++|.++||-+|= |.||++ .+.+.+. +.++||.+
T Consensus 138 ria~e~GaD~IK-TsTG~~~~~at~~~v~~~~~~~~~~v~ik~ 179 (203)
T cd00959 138 EIAIEAGADFIK-TSTGFGPGGATVEDVKLMKEAVGGRVGVKA 179 (203)
T ss_pred HHHHHhCCCEEE-cCCCCCCCCCCHHHHHHHHHHhCCCceEEE
Confidence 899999995333 336644 3444444 35678765
No 388
>PTZ00344 pyridoxal kinase; Provisional
Probab=46.76 E-value=1.1e+02 Score=31.25 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCCCCCccCHHHhHhhH-----hcCCcEEEEccCCCHHHHHHHHHHHHh---cCCCceEEEe---------cCChhhhhh
Q 010610 270 TLPSITEKDWDDIKFGV-----DNKVDFYAVSFVKDAQVVHELKNYLKS---CGADIHVIVK---------IESADSIPN 332 (506)
Q Consensus 270 ~lp~ltekD~~dI~~al-----~~gvD~IalSfV~saedV~~lr~~l~~---~~~~i~IIaK---------IEt~~aveN 332 (506)
.-|.+++.+.+++...+ ..+.|+|...|+-+++.+..+.+++++ .+.++.++.= .-..+..+.
T Consensus 53 ~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 53 KGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred cCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 34666776676665544 336799999999999999999998863 2333344332 234566677
Q ss_pred HHHHHHhCCEEEEcCCCcccCCCCC--cHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 333 LHSIITASDGAMVARGDLGAELPIE--EVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 333 ldeIl~~sDGImIaRGDLgvelg~e--~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
+.+++..+|.+....-++..=.|.+ .... .++..++..+.|.+.++.|
T Consensus 133 ~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~-~~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 133 YRELIPYADVITPNQFEASLLSGVEVKDLSD-ALEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHhhhCCEEeCCHHHHHHHhCCCCCCHHH-HHHHHHHHHHhCCCEEEEE
Confidence 7788888999988877765444432 2222 2344444445576655555
No 389
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=46.70 E-value=45 Score=29.91 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=34.0
Q ss_pred chhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCC
Q 010610 215 DDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKS 258 (506)
Q Consensus 215 ~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s 258 (506)
.++.+.+++||+|..-.|.+ -+|.+++++.+..++-.|-.++=
T Consensus 33 ~~m~~~Lk~GD~VvT~gGi~-G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 33 IDLHESLQPGDRVHTTSGLQ-ATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred HHHHHhcCCCCEEEECCCeE-EEEEEEeCCEEEEEECCCeEEEE
Confidence 47889999999999998855 45778888888888766666663
No 390
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=46.55 E-value=3.2e+02 Score=27.39 Aligned_cols=141 Identities=12% Similarity=0.147 Sum_probs=96.4
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCC-
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE- 357 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e- 357 (506)
.+++..-.+.|++.+.+- ++-.++..++.+++++.|-...+-.|=+|+ |+.++..++..|-++| +.+|=|+-
T Consensus 77 eq~V~~~a~agas~~tfH-~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~--Ve~~~~~~~~~D~vLv----MtVePGFGG 149 (224)
T KOG3111|consen 77 EQWVDQMAKAGASLFTFH-YEATQKPAELVEKIREKGMKVGLALKPGTP--VEDLEPLAEHVDMVLV----MTVEPGFGG 149 (224)
T ss_pred HHHHHHHHhcCcceEEEE-EeeccCHHHHHHHHHHcCCeeeEEeCCCCc--HHHHHHhhccccEEEE----EEecCCCch
Confidence 355665567899987654 455567889999999999988898898885 6677777777787777 34555553
Q ss_pred -c-HHHHHHHHHHHHHHcCCcEE-EEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHH
Q 010610 358 -E-VPLLQEEIIRTCRSMGKAVI-VATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 434 (506)
Q Consensus 358 -~-V~~~Qk~II~~c~~~GkPvi-vATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I 434 (506)
+ ++....++-+.-.++..+.| +-. ...|. -+..+...|+++++-..-.---.-|-++++.|++.
T Consensus 150 QkFme~mm~KV~~lR~kyp~l~ievDG--------Gv~~~-----ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 150 QKFMEDMMPKVEWLREKYPNLDIEVDG--------GVGPS-----TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNS 216 (224)
T ss_pred hhhHHHHHHHHHHHHHhCCCceEEecC--------CcCcc-----hHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHH
Confidence 2 33344444444458888887 322 11233 26677788999887654444456689999999998
Q ss_pred HHHHh
Q 010610 435 SLRTE 439 (506)
Q Consensus 435 ~~~aE 439 (506)
++.+-
T Consensus 217 v~~a~ 221 (224)
T KOG3111|consen 217 VEKAA 221 (224)
T ss_pred Hhhhh
Confidence 87654
No 391
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=46.47 E-value=2.5e+02 Score=28.14 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHH
Q 010610 361 LLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (506)
Q Consensus 361 ~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m 431 (506)
......++.++++|++|++.|. ++. .-...+...++..|+|++.- +||-.+++++
T Consensus 210 ~~~~~~v~~~~~~Gl~v~~wT~--~~~-------~n~~~~~~~l~~~GvdgiiT-------D~p~~~~~~~ 264 (265)
T cd08564 210 FWTEEFVKKAHENGLKVMTYFD--EPV-------NDNEEDYKVYLELGVDCICP-------NDPVLLVNFL 264 (265)
T ss_pred hhhHHHHHHHHHcCCEEEEecC--CCC-------CCCHHHHHHHHHcCCCEEEc-------CCHHHHHHhh
Confidence 3568899999999999999972 111 01122355678889998754 5887776654
No 392
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=46.46 E-value=67 Score=26.81 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCc-eEEEEcCC---------hHHHHHHHhhCCCCeEEEE
Q 010610 463 FAYHATMMSNTLGT-SIVVFTRT---------GFMAILLSHYRPSGTIFAF 503 (506)
Q Consensus 463 ia~~av~~A~~~~a-~Iiv~T~s---------G~tA~~lS~~RP~~pIia~ 503 (506)
.+....+.+++.++ .||+-++. |.++..+.+.-| |||+.+
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred cchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 44455678899999 77776666 789999999877 999875
No 393
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=46.32 E-value=55 Score=34.36 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=38.4
Q ss_pred hHhhHhcCCcEEEEccCCCH---------------HHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHhCCEEE
Q 010610 282 IKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITASDGAM 344 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~sa---------------edV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~sDGIm 344 (506)
++...+.|+|+|.+. -++. .+...++++ .+...+++||+ -|-|++- +.++++.+||||
T Consensus 157 ~~~l~~aG~d~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~~i~~v-~~~~~~iPVI~nGgI~s~ed---a~~~l~~aDgVm 231 (333)
T PRK11815 157 VDTVAEAGCDTFIVH-ARKAWLKGLSPKENREIPPLDYDRVYRL-KRDFPHLTIEINGGIKTLEE---AKEHLQHVDGVM 231 (333)
T ss_pred HHHHHHhCCCEEEEc-CCchhhcCCCccccccCCCcCHHHHHHH-HHhCCCCeEEEECCcCCHHH---HHHHHhcCCEEE
Confidence 345567899999876 2321 123333332 22223577777 4666543 344455699999
Q ss_pred EcCCCcc
Q 010610 345 VARGDLG 351 (506)
Q Consensus 345 IaRGDLg 351 (506)
||||=|+
T Consensus 232 IGRa~l~ 238 (333)
T PRK11815 232 IGRAAYH 238 (333)
T ss_pred EcHHHHh
Confidence 9999664
No 394
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=46.28 E-value=60 Score=31.56 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHhHhhHhcCCcEEEEccC--------CCHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHh-CCEEEEcC
Q 010610 279 WDDIKFGVDNKVDFYAVSFV--------KDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV--------~saedV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDGImIaR 347 (506)
.+++..+.+.|+|+|.+... ....+...++++.+.. ++++++ -|-++ +++.+.++. +||+++|+
T Consensus 133 ~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~---~~~~~~l~~GadgV~vGs 207 (219)
T cd04729 133 LEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSP---EQAAKALELGADAVVVGS 207 (219)
T ss_pred HHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCH---HHHHHHHHCCCCEEEEch
Confidence 34567788899999965321 1122334444433322 355555 34333 566776666 89999996
Q ss_pred C
Q 010610 348 G 348 (506)
Q Consensus 348 G 348 (506)
.
T Consensus 208 a 208 (219)
T cd04729 208 A 208 (219)
T ss_pred H
Confidence 4
No 395
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=46.20 E-value=47 Score=36.72 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=40.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 109 ~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
+.++-+.+|+.-.+.+.++.|+++|++++-++-+||..+.+.+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45566677765567999999999999999999999998777777776664
No 396
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.03 E-value=3.9e+02 Score=28.25 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=85.2
Q ss_pred CCCccCHHHhHhh-HhcCCcEEEE---------ccCC---CHHHHHHHHHHHHhcCCCceEEEec----CChhhhhhHHH
Q 010610 273 SITEKDWDDIKFG-VDNKVDFYAV---------SFVK---DAQVVHELKNYLKSCGADIHVIVKI----ESADSIPNLHS 335 (506)
Q Consensus 273 ~ltekD~~dI~~a-l~~gvD~Ial---------SfV~---saedV~~lr~~l~~~~~~i~IIaKI----Et~~aveNlde 335 (506)
.++..++..|..+ -+.|+|.|=+ ||.. ...+.+.++...... ++.++.+.+ =+.+ .++.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~-~~~~~~~ll~pg~~~~~---dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV-KRAKVAVLLLPGIGTVH---DLKA 95 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC-CCCEEEEEeccCccCHH---HHHH
Confidence 3455566666544 4689999877 3331 112444444444332 233333332 2322 2333
Q ss_pred HHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH-HHhCcceeE
Q 010610 336 IITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVM 413 (506)
Q Consensus 336 Il~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana-v~dG~D~vm 413 (506)
-.+. .|.|-|+ ....+.. .-++.++.+++.|..+.+.- +.+ ..-+..++.+.+.. ...|+|++-
T Consensus 96 a~~~gvd~iri~-------~~~~e~d-~~~~~i~~ak~~G~~v~~~l--~~s----~~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 96 AYDAGARTVRVA-------THCTEAD-VSEQHIGMARELGMDTVGFL--MMS----HMTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred HHHCCCCEEEEE-------eccchHH-HHHHHHHHHHHcCCeEEEEE--Ecc----cCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3332 6777765 2333433 35789999999998876532 222 12344566666665 445999998
Q ss_pred eeccccCCCCHHHHHHHHHHHHHHH
Q 010610 414 LSGETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 414 Ls~ETA~G~yPveaV~~m~~I~~~a 438 (506)
+. +|+=.-+|.+.-+....+....
T Consensus 162 i~-DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 162 IV-DSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred Ec-cCCCCCCHHHHHHHHHHHHHhC
Confidence 85 8988899988877777776544
No 397
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=46.03 E-value=3.6e+02 Score=27.94 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+.+.. |..+.-..+...-..|++.+...+ .| -++.+...+++++- ..++.
T Consensus 81 alA~~a~~~G~~~~v~~-----------p~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~~-g~~~~ 142 (317)
T TIGR02991 81 ALAYAAAEEGVRATICM-----------SELVPQNKVDEIRRLGAEVRIVGR-----SQ-DDAQEEVERLVADR-GLTML 142 (317)
T ss_pred HHHHHHHHhCCCEEEEc-----------CCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHhc-CCEee
Confidence 45568999999998862 222222335566678999876642 33 45666666665432 11111
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHh----hCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSH----YRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA~~lS~----~RP~~pIia~T~ 505 (506)
. .|. .....+....-+.++.++++- .||+..-+|.|.--+++ ++|...|+++-+
T Consensus 143 ~-~~~------n~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep 202 (317)
T TIGR02991 143 P-PFD------HPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSM 202 (317)
T ss_pred C-CCC------ChHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 1 111 112223334456677777753 78888888887665555 468888998865
No 398
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.90 E-value=26 Score=31.10 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=24.4
Q ss_pred EeccchhhhhcCCCCEEEEeCCeEEEEEEEEe
Q 010610 211 SVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT 242 (506)
Q Consensus 211 ~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~ 242 (506)
-++++.. ..+++||+|.+..+++..+|+++.
T Consensus 25 Rl~d~kr-r~ik~GD~IiF~~~~l~v~V~~vr 55 (111)
T COG4043 25 RLADPKR-RQIKPGDKIIFNGDKLKVEVIDVR 55 (111)
T ss_pred EecCHhh-cCCCCCCEEEEcCCeeEEEEEEEe
Confidence 3445443 678999999999999999998753
No 399
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=45.89 E-value=1e+02 Score=30.85 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
-++.+++.+.+.|.++.|.+.-+... -+|++++++..|-|+.+-. =+.....+-+.|+++++|++.+
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D----------~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTD----------NVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHHHhCCEEEEe
Confidence 45566677777788877766443332 2578888888998887621 2245678889999999999876
No 400
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=45.75 E-value=45 Score=30.63 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=33.6
Q ss_pred EEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 342 GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 342 GImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
.+++|--|+....+.+++..-.+.+++.+++.|.++++.|
T Consensus 64 ~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 64 IIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred EEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4566677888777888899999999999999999988875
No 401
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=45.55 E-value=2.3e+02 Score=30.05 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=88.8
Q ss_pred ccCHHHhHhhHhcCCc--EEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH---h--C--CEEEEc
Q 010610 276 EKDWDDIKFGVDNKVD--FYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT---A--S--DGAMVA 346 (506)
Q Consensus 276 ekD~~dI~~al~~gvD--~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~---~--s--DGImIa 346 (506)
++|.+.|+.+++.--+ .+.-|- +.++.+++-.+..+.|. .+++.- +.-++-+.++.. . . +-|++.
T Consensus 136 ~kD~evleaale~~~g~~pLInSa--t~en~~~i~~lA~~y~~--~Vva~s--~~Dln~ak~L~~~l~~~Gi~~edIviD 209 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGSA--EEDNYKKIAAAAMAYGH--AVIAWS--PLDINLAKQLNILLTELGVPRERIVMD 209 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEEC--CHHHHHHHHHHHHHhCC--eEEEEc--HHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 5678888777764332 344442 35566666666655544 344432 222443333333 2 2 457888
Q ss_pred CCCcccCCCCCcHHHHHHHHHHHHHH----cCCcEEEEehh-----hhhhh---cC----CCCChh---hcccHHHHHHh
Q 010610 347 RGDLGAELPIEEVPLLQEEIIRTCRS----MGKAVIVATNM-----LESMI---VH----PTPTRA---EVSDIAIAVRE 407 (506)
Q Consensus 347 RGDLgvelg~e~V~~~Qk~II~~c~~----~GkPvivATqm-----LeSMi---~~----~~PtRA---Ev~Dvanav~d 407 (506)
++=.++..+.+.....+.+|=+.+-+ .|-|+|..+-. =|+.. .. ++-.|+ |+.-.+.++..
T Consensus 210 P~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ 289 (319)
T PRK04452 210 PTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLA 289 (319)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHh
Confidence 88888888888777777777666654 56686654321 02111 00 001122 56666778889
Q ss_pred CcceeEeeccccCCCCHHHHHHHHHHHHHHH
Q 010610 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 408 G~D~vmLs~ETA~G~yPveaV~~m~~I~~~a 438 (506)
|+|.++|. || ++|+++++++...
T Consensus 290 ga~i~vm~-------hp-~s~~~~~~~~~~l 312 (319)
T PRK04452 290 GADIFMMR-------HP-ESVKTLKEIIDTL 312 (319)
T ss_pred cCcEEEEe-------CH-HHHHHHHHHHHHH
Confidence 99999996 78 8999999887653
No 402
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=45.50 E-value=1.3e+02 Score=32.24 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEE
Q 010610 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI 378 (506)
Q Consensus 300 saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvi 378 (506)
+-++++.+++.. +.++|.| ...-.+.....++. +|||.|+ ..---.++..+..-..+.+.++..+.|||
T Consensus 224 ~w~~i~~ir~~~-----~~pviiK--gV~~~eda~~a~~~G~d~I~VS---nhGGrqld~~~~~~~~L~ei~~~~~~~vi 293 (361)
T cd04736 224 NWQDLRWLRDLW-----PHKLLVK--GIVTAEDAKRCIELGADGVILS---NHGGRQLDDAIAPIEALAEIVAATYKPVL 293 (361)
T ss_pred CHHHHHHHHHhC-----CCCEEEe--cCCCHHHHHHHHHCCcCEEEEC---CCCcCCCcCCccHHHHHHHHHHHhCCeEE
Q ss_pred EEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 379 VATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 379 vATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
... -----.|++.|+..|+|++|+
T Consensus 294 ~dG------------GIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 294 IDS------------GIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EeC------------CCCCHHHHHHHHHcCCCEEEE
No 403
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=45.34 E-value=47 Score=27.09 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCCEEEEEEecCCCCceEEEeccchhhhhcCCCCEEEE-eCCeEEE
Q 010610 192 SGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLV-DGGMMSL 236 (506)
Q Consensus 192 ~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~Ili-DDG~i~l 236 (506)
+|+...|-.++.. ..+.++-..|+..++.||.+.+ ++|.+.+
T Consensus 8 E~~~AVl~~~~~~---~~~~vp~~~LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 8 EGDYAVLELEDGE---KEIDVPRSRLPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred eCCEEEEEECCCe---EEEEEEHHHCCCCCCcccEEEECCCceEEE
Confidence 3666666554321 4677888889999999999999 7777654
No 404
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=45.34 E-value=1.8e+02 Score=26.44 Aligned_cols=44 Identities=30% Similarity=0.462 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHH---------HHHHHHHHHHH
Q 010610 118 PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQ---------KVIDLVKEYNA 161 (506)
Q Consensus 118 Pss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~---------~~i~~ir~~~~ 161 (506)
+...+.+.+++|.++|.+.+.+++-|++.+.+. ++++.++.+.+
T Consensus 95 ~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 95 PGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred cccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456689999999999999888888898876553 45566665543
No 405
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=45.32 E-value=51 Score=30.45 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=63.2
Q ss_pred hHhhHhcCCcEEEEccCCCH------HHHHHHHHHHHhcCCCceEEEe-cC-----------C---hhhhhhHHHHHHh-
Q 010610 282 IKFGVDNKVDFYAVSFVKDA------QVVHELKNYLKSCGADIHVIVK-IE-----------S---ADSIPNLHSIITA- 339 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~sa------edV~~lr~~l~~~~~~i~IIaK-IE-----------t---~~aveNldeIl~~- 339 (506)
++++.++|+|+|-+.+...- .++.++++++++.|-.+..+.- .. + ..+++.+.+.++.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 35677889999988776553 3478899999888766332221 11 1 2336667766665
Q ss_pred ----CCEEEEcCC--CcccCCCC----CcHHHHHHHHHHHHHHcCCcEEE
Q 010610 340 ----SDGAMVARG--DLGAELPI----EEVPLLQEEIIRTCRSMGKAVIV 379 (506)
Q Consensus 340 ----sDGImIaRG--DLgvelg~----e~V~~~Qk~II~~c~~~GkPviv 379 (506)
++.+.+..| +..-.... +.+....+++...|.+.|.-+.+
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 578888877 33333322 35666678888889999966553
No 406
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=45.26 E-value=1.4e+02 Score=25.88 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=38.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChH----------HHHHHHHHHHHHHH
Q 010610 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHA----------SHQKVIDLVKEYNA 161 (506)
Q Consensus 109 ~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e----------~~~~~i~~ir~~~~ 161 (506)
..+|..+..+...+.+.++.|.+.|++.+++++...+.+ .+.++++.++.+.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 138 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE 138 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 445555444444459999999999999999999999987 34555666666654
No 407
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.26 E-value=1.4e+02 Score=30.93 Aligned_cols=96 Identities=21% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHh-CCEEEEcC-CCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhccc-HHHHHHhCcc
Q 010610 334 HSIITA-SDGAMVAR-GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSD-IAIAVREGAD 410 (506)
Q Consensus 334 deIl~~-sDGImIaR-GDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~D-vanav~dG~D 410 (506)
+..++. +|||++.= --=+..|..++-..+.+..++.+ .-.+|||+-+- ..+-.|.-+ .-.|-..|+|
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~---------~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGAT---------TLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEec---------cCCHHHHHHHHHHHHHhCCC
Confidence 334444 79999851 11112333445444555555554 34478886641 112233333 3446777999
Q ss_pred eeEeeccccCCCCHHHHHHHHHHHHHHHh
Q 010610 411 AVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 411 ~vmLs~ETA~G~yPveaV~~m~~I~~~aE 439 (506)
++|+..=-....-+-+.++..+.|+..++
T Consensus 106 ~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 106 GTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99997543333334688899999998874
No 408
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=45.10 E-value=34 Score=37.93 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=41.2
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 109 ~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
+..+=+-+|.+.+..+.++.|+++|+++.=|..+||..+...++++.||+
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 44444556777788999999999999999999999998877777777775
No 409
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=45.05 E-value=3.5e+02 Score=29.21 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=56.7
Q ss_pred HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEc-CCCcccCC--CC
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVA-RGDLGAEL--PI 356 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIa-RGDLgvel--g~ 356 (506)
..+...+.+++.+ +++-+.++.+.+...+ +.+-..+......+-.+.++++ +|.|.|- |= -..+. +-
T Consensus 104 aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~--VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt-~~q~~~sg~ 174 (369)
T TIGR01304 104 ATRLLQELHAAPL------KPELLGERIAEVRDSG--VITAVRVSPQNAREIAPIVVKAGADLLVIQGTL-VSAEHVSTS 174 (369)
T ss_pred HHHHHHHcCCCcc------ChHHHHHHHHHHHhcc--eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccc-hhhhccCCC
Confidence 3334445566652 4555555545454433 3333334333444444555555 7888873 10 00000 11
Q ss_pred CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecc
Q 010610 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~E 417 (506)
.+ ...+.+.+++.++|||. .. ..| ..|+..++..|+|+|| -++
T Consensus 175 ~~----p~~l~~~i~~~~IPVI~-G~---------V~t---~e~A~~~~~aGaDgV~-~G~ 217 (369)
T TIGR01304 175 GE----PLNLKEFIGELDVPVIA-GG---------VND---YTTALHLMRTGAAGVI-VGP 217 (369)
T ss_pred CC----HHHHHHHHHHCCCCEEE-eC---------CCC---HHHHHHHHHcCCCEEE-ECC
Confidence 11 22566667778999985 22 223 2346677888999999 344
No 410
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=44.88 E-value=1.1e+02 Score=29.91 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc-CCcEEEEe
Q 010610 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVAT 381 (506)
Q Consensus 304 V~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~-GkPvivAT 381 (506)
+..+.+.+.+.|..+.+-+.-|.... +|++++++-.|.|+-+- +.. .....+...|.+. ++|++.++
T Consensus 83 a~~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~---------D~~-~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 83 VEALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAF---------DNA-ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECC---------CCH-HHHHHHHHHHHHhCCCCEEEee
Confidence 44666777777887777665555544 57888888788887651 222 3455778899998 99999874
No 411
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=44.87 E-value=4e+02 Score=29.08 Aligned_cols=259 Identities=15% Similarity=0.198 Sum_probs=134.8
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCC-hHHH--HHHHHHH-HHHHHhcCCceEEEEeecCCCeeEEeccCCCeEecCCCEEEE
Q 010610 123 REMIWKLAEAGMNVARLNMSHGD-HASH--QKVIDLV-KEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTF 198 (506)
Q Consensus 123 ~e~i~~li~aGm~v~RiN~SHg~-~e~~--~~~i~~i-r~~~~~~~~~~i~Il~DL~GPkIRtG~l~~~i~Lk~G~~v~l 198 (506)
..+|+.|++.|..|.- +||-. +... ..-++.+ ...++.++ ++|...-|.-||+.+- .--.|++|+.+.|
T Consensus 39 lpTI~~l~~~gakvvl--~sH~gRP~g~~~~~SL~~va~~L~~lL~-~~V~fv~d~~g~~~~~----~i~~l~~G~ilLL 111 (389)
T PRK00073 39 LPTIKYLLEKGAKVIL--LSHLGRPKGEDPEFSLAPVAKRLSELLG-KEVKFVDDCIGEEARE----AIAALKDGEVLLL 111 (389)
T ss_pred HHHHHHHHHCCCeEEE--EEecCCCCCCCCCcCHHHHHHHHHHHhC-CCeEECCCCCCHHHHH----HHhcCCCCcEEEE
Confidence 4589999999988765 47755 2100 0112222 22334455 7887777787876541 0135788888877
Q ss_pred EEecCCCCceEEEeccchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeCCCCccccCCCccCCCCCCccC
Q 010610 199 TIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKD 278 (506)
Q Consensus 199 t~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlp~~~~~lp~ltekD 278 (506)
-.-+....+.. +.++|.+.+-.--.||++|.-=... |+.-.+ ..+|.+-+
T Consensus 112 EN~Rf~~~E~~---~d~~~a~~LA~l~DiyVNDAFg~aH---------------------R~haS~----vgi~~~lp-- 161 (389)
T PRK00073 112 ENVRFNKGEEK---NDPELAKKLASLGDVFVNDAFGTAH---------------------RAHAST----VGIAKFLK-- 161 (389)
T ss_pred eccCcCccccc---CHHHHHHHHHHhCCEEEECchhhhh---------------------hcccch----hchhhhCc--
Confidence 65443322221 4467777776555588888421100 000000 01111000
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCC-ceEE--EecCChhhhhhHHHHHHhCCEEEEcC--------
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD-IHVI--VKIESADSIPNLHSIITASDGAMVAR-------- 347 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~-i~II--aKIEt~~aveNldeIl~~sDGImIaR-------- 347 (506)
....-+.+ .+++..+.+.+..-... +.|+ +|+.+.-.+ ++.++..+|.+++|-
T Consensus 162 ~~~aG~lm--------------ekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~v--i~~Ll~~~D~liigG~ma~tFl~ 225 (389)
T PRK00073 162 PAAAGFLM--------------EKELEALGKALENPERPFVAILGGAKVSDKIGV--LENLLEKVDKLIIGGGMANTFLK 225 (389)
T ss_pred hhhhhHHH--------------HHHHHHHHHHhcCCCCCeEEEEcCccHHhHHHH--HHHHHHhhhhheeChHHHHHHHH
Confidence 00111111 24566666666432221 2233 478776444 777778899999972
Q ss_pred ---CCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCH
Q 010610 348 ---GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (506)
Q Consensus 348 ---GDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yP 424 (506)
.+.|.++--++....-++|+.+|++.|+.+++-+...=.=.....++ ...++ ..+-+ |...|- +|.
T Consensus 226 A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~lPvD~vv~~~~~~~~~--~~~~~-~~ip~--~~~~lD----IGp-- 294 (389)
T PRK00073 226 AQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVVVAKEFSDAEA--TVVSV-DEIPD--DWMILD----IGP-- 294 (389)
T ss_pred HcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEECCCeeEEeeccCCCce--EEeEc-ccCCC--CCeeee----cCH--
Confidence 24554443345666778999999999998774332220000000110 11111 11211 122222 343
Q ss_pred HHHHHHHHHHHHHHhccccCCC
Q 010610 425 LKAVKVMHTVSLRTEATITGGA 446 (506)
Q Consensus 425 veaV~~m~~I~~~aE~~~~~~~ 446 (506)
++++...+++..++..+|.-.
T Consensus 295 -~Ti~~~~~~i~~akti~wNGP 315 (389)
T PRK00073 295 -KTIELFAEIIKDAKTIVWNGP 315 (389)
T ss_pred -HHHHHHHHHHhhCCEEEEECC
Confidence 789999999999999888653
No 412
>PRK08526 threonine dehydratase; Provisional
Probab=44.65 E-value=3.1e+02 Score=29.65 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.|+.+. .|..+-...+...-..|++.++. |...-++++...+++++-. . ++
T Consensus 82 avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~g-~-~~ 142 (403)
T PRK08526 82 GVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKENN-L-TF 142 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhcC-C-Ee
Confidence 4556899999998886 23333333455677789988764 3345677777666654422 1 11
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
-..|.+ .........-+.++.++++. .||+..-+|.++ +.+-.++|.+.|+++-+
T Consensus 143 v~p~~~------~~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep 203 (403)
T PRK08526 143 IHPFED------EEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGA 203 (403)
T ss_pred eCCCCC------HHHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 111111 01122223335677777754 888888787765 44555689999999865
No 413
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=44.62 E-value=4.1e+02 Score=28.34 Aligned_cols=83 Identities=24% Similarity=0.299 Sum_probs=55.6
Q ss_pred EEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCC
Q 010610 342 GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 421 (506)
Q Consensus 342 GImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G 421 (506)
.+|--+...|--.|+. =|...+.+++. ...||++.. .+-+. +|++.|+..|+|+++++.=-+..
T Consensus 221 avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdA---------GIg~~---sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDA---------GVGTA---SDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred EEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEeC---------CCCCH---HHHHHHHHcCCCEEEEcceeccC
Confidence 3444334444444544 34455555554 569999864 33333 58999999999999999888999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 010610 422 KFPLKAVKVMHTVSLRTEA 440 (506)
Q Consensus 422 ~yPveaV~~m~~I~~~aE~ 440 (506)
+.|+.--+.|+.-++.-..
T Consensus 285 ~dPv~Ma~A~~~av~aGr~ 303 (326)
T PRK11840 285 KNPVLMARAMKLAVEAGRL 303 (326)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9998877777665544443
No 414
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=44.55 E-value=51 Score=29.29 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=31.5
Q ss_pred chhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeC
Q 010610 215 DDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (506)
Q Consensus 215 ~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~ 257 (506)
.++.+.+++||+|..-.|- .-+|.+++++.+..++-.|..++
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi-~G~Vv~i~~~~v~lei~~g~~i~ 88 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGI-IGKVTKVSEDFVIIELNDDTEIK 88 (106)
T ss_pred HHHHHhcCCCCEEEECCCe-EEEEEEEeCCEEEEEECCCeEEE
Confidence 5788899999999888874 45667788888877775555554
No 415
>PLN02979 glycolate oxidase
Probab=44.33 E-value=1.5e+02 Score=32.04 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc--CC
Q 010610 300 DAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM--GK 375 (506)
Q Consensus 300 saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~--Gk 375 (506)
+-+|+..+|+.- +.+||+| |-+ .+......+. +|||.|+-.. |-.+ ...+....-+.+...+. ..
T Consensus 211 tW~dl~wlr~~~-----~~PvivKgV~~---~~dA~~a~~~Gvd~I~VsnhG-Grql--d~~p~t~~~L~ei~~~~~~~~ 279 (366)
T PLN02979 211 SWKDVQWLQTIT-----KLPILVKGVLT---GEDARIAIQAGAAGIIVSNHG-ARQL--DYVPATISALEEVVKATQGRI 279 (366)
T ss_pred CHHHHHHHHhcc-----CCCEEeecCCC---HHHHHHHHhcCCCEEEECCCC-cCCC--CCchhHHHHHHHHHHHhCCCC
Confidence 445666666532 4566666 222 1222222222 6888886321 1111 12222233333232332 37
Q ss_pred cEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 376 AVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 376 PvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
||+...-+= .-.|++.|+..|+|++++.
T Consensus 280 ~Vi~dGGIr------------~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 280 PVFLDGGVR------------RGTDVFKALALGASGIFIG 307 (366)
T ss_pred eEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
Confidence 888764322 3468999999999999974
No 416
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=44.00 E-value=52 Score=33.26 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=35.5
Q ss_pred CeEecCCCEEEEEEecCCCCceEEEeccchhh--------------hhcCCCCEEEEeCCeEEEEEEEE
Q 010610 187 PITLTSGQEFTFTIQRGVGSAECVSVNYDDFV--------------NDVEVGDMLLVDGGMMSLLVKSK 241 (506)
Q Consensus 187 ~i~Lk~G~~v~lt~~~~~~~~~~i~v~~~~l~--------------~~v~~Gd~IliDDG~i~l~V~~~ 241 (506)
...|+.||.++|+.-.+...-+.+..|..++. -.+++|+.++-|.|+..++|++-
T Consensus 14 s~~v~rGq~lri~d~~G~q~~d~~~~na~d~~Er~n~~dT~k~q~~~~l~~G~~L~Sd~gRpm~sIv~D 82 (233)
T TIGR03425 14 SKVLRRGTRLRLTDLEGGANVSLLLYNADAPLERYNMADTLKVQWTAYLTKGHVLLSDMGRVLASIVED 82 (233)
T ss_pred EEEECCCCEEEEEeCCCCeEeeeEEecCCCcccccCHHHHHHHhCCeeccCCCEeEeCCCcceEEEEcc
Confidence 46789999999875433222222222322221 14679999999999999998853
No 417
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=43.95 E-value=56 Score=35.52 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=62.0
Q ss_pred cCHHHhHhhHhcCCcEEEEc-------cCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCC
Q 010610 277 KDWDDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGD 349 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalS-------fV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGD 349 (506)
.|.-.|.+..+.|+.+|... -|-+.+++.+.|+.+..+|-+..+ ||+.. +.+-|..|.+
T Consensus 11 ~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL~~~v---vEs~p----------v~e~Ik~g~~- 76 (394)
T TIGR00695 11 NDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGLHWSV---VESVP----------VHEAIKTGTG- 76 (394)
T ss_pred CCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEE---EeCCC----------ccHHHHcCCC-
Confidence 56666667777899998843 378889999999999988865444 56532 2344555433
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 350 Lgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
+.++-....|+.|+..-++|+||++--
T Consensus 77 -----~rd~~Ienyk~~irNla~~GI~vicYN 103 (394)
T TIGR00695 77 -----NYGRWIENYKQTLRNLAQCGIKTVCYN 103 (394)
T ss_pred -----cHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 345677777899999999999999763
No 418
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=43.70 E-value=3.7e+02 Score=27.35 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHH
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~a 438 (506)
.-+..++.++++|+-+..+- +|...++.+...+.+++. +...|+|.+.|. +|.=.-.|.+.-+++..+.++.
T Consensus 119 ~~~~~i~~ak~~G~~v~~~i----~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 119 NLEVAIKAVKKAGKHVEGAI----CYTGSPVHTLEYYVKLAKELEDMGADSICIK-DMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred HHHHHHHHHHHCCCeEEEEE----EecCCCCCCHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhC
Confidence 45667788888897766421 233345556666666665 455699999995 8888889999988888887654
No 419
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=43.63 E-value=3.1e+02 Score=26.50 Aligned_cols=148 Identities=12% Similarity=0.204 Sum_probs=74.1
Q ss_pred CHHHh-HhhHhcCCcEEEEccC-----CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCc
Q 010610 278 DWDDI-KFGVDNKVDFYAVSFV-----KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDL 350 (506)
Q Consensus 278 D~~dI-~~al~~gvD~IalSfV-----~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDL 350 (506)
|..++ +...++|+|.+.+.-. ....+...+++..+..+-.+.+-.-|-+++- ++++++. +|.+++++.=|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~---~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLED---IERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHH---HHHHHHcCCCEEEECchHH
Confidence 54444 3445689998877633 2333455555555443333334346666544 4444544 79999986533
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHcCC-cEEEEehhhhh--hhcCC-CCChhhcccHHH-HHHhCcceeEeeccccCCCCHH
Q 010610 351 GAELPIEEVPLLQEEIIRTCRSMGK-AVIVATNMLES--MIVHP-TPTRAEVSDIAI-AVREGADAVMLSGETAHGKFPL 425 (506)
Q Consensus 351 gvelg~e~V~~~Qk~II~~c~~~Gk-PvivATqmLeS--Mi~~~-~PtRAEv~Dvan-av~dG~D~vmLs~ETA~G~yPv 425 (506)
++ +...+++ +++.|+ +++++-.+-.. +...- ..+.-+..+.+. +...|+|.+.+.+=+..|.+.-
T Consensus 107 ------~d-p~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g 176 (234)
T cd04732 107 ------KN-PELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG 176 (234)
T ss_pred ------hC-hHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC
Confidence 12 2233333 345566 55554221110 00000 011112223333 4556899999987666665533
Q ss_pred HHHHHHHHHHHHH
Q 010610 426 KAVKVMHTVSLRT 438 (506)
Q Consensus 426 eaV~~m~~I~~~a 438 (506)
.-.+.+.++++.+
T Consensus 177 ~~~~~i~~i~~~~ 189 (234)
T cd04732 177 PNFELYKELAAAT 189 (234)
T ss_pred CCHHHHHHHHHhc
Confidence 3345555555443
No 420
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=43.54 E-value=3.6e+02 Score=27.20 Aligned_cols=130 Identities=13% Similarity=0.159 Sum_probs=75.7
Q ss_pred CCCccCHHHhHhhHhcCCcEEEEccCC-------------CHHHHHHHHHHHHhcCCCceEEEecCCh------hhhhhH
Q 010610 273 SITEKDWDDIKFGVDNKVDFYAVSFVK-------------DAQVVHELKNYLKSCGADIHVIVKIESA------DSIPNL 333 (506)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~IalSfV~-------------saedV~~lr~~l~~~~~~i~IIaKIEt~------~aveNl 333 (506)
.++-+|.---+.+-+.|+|.|.+|=-- +.+++...-+.+.+.-..++|++=+|+- ++++|.
T Consensus 16 ~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~ 95 (240)
T cd06556 16 TLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELA 95 (240)
T ss_pred EecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHH
Confidence 345567666666677899988876210 1111111111222222347899999875 455566
Q ss_pred HHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcC-------CC--CChhh-cccHH
Q 010610 334 HSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVH-------PT--PTRAE-VSDIA 402 (506)
Q Consensus 334 deIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~-------~~--PtRAE-v~Dva 402 (506)
.++++. ++||-|-=+. -+-..+++.++++.||+--|...-+.... .+ ....| +.+.-
T Consensus 96 ~~l~~aGa~gv~iED~~------------~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------------WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred HHHHHcCCcEEEEcCcH------------HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 777776 7899985331 23345777888899999877663322110 00 11122 44444
Q ss_pred HHHHhCcceeEe
Q 010610 403 IAVREGADAVML 414 (506)
Q Consensus 403 nav~dG~D~vmL 414 (506)
-+...|+|++++
T Consensus 164 ay~~AGAd~i~~ 175 (240)
T cd06556 164 AYAPAGADLIVM 175 (240)
T ss_pred HHHHcCCCEEEE
Confidence 566889999999
No 421
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=43.54 E-value=3.7e+02 Score=27.39 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=90.7
Q ss_pred ccccCCCccCCCCCCccCHHHh-HhhHhcCCcEEEEc-cCCCH-----HHHHHHHHHHHhcCCCceEEEecCChhhhhhH
Q 010610 261 HLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVS-FVKDA-----QVVHELKNYLKSCGADIHVIVKIESADSIPNL 333 (506)
Q Consensus 261 gVnlp~~~~~lp~ltekD~~dI-~~al~~gvD~IalS-fV~sa-----edV~~lr~~l~~~~~~i~IIaKIEt~~aveNl 333 (506)
|..-|+..+ |.+++..| +...+.|+|.|=+. |+... .|..++...+... .+..+.+-.-+.+++
T Consensus 9 G~Q~~~~~~-----s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~dv--- 79 (274)
T cd07938 9 GLQNEKTFI-----PTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGA--- 79 (274)
T ss_pred CCcCCCCCc-----CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHHH---
Confidence 555555433 43454444 45567999999665 43322 3444555555432 244555544444443
Q ss_pred HHHHHh-CCE--EEEcCCCcc----cCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCC---ChhhcccHHH
Q 010610 334 HSIITA-SDG--AMVARGDLG----AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTP---TRAEVSDIAI 403 (506)
Q Consensus 334 deIl~~-sDG--ImIaRGDLg----velg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~P---tRAEv~Dvan 403 (506)
+..++. .|. +++.-.|+- .....++....-++.++.++.+|+-+.+.-.+- ...|.- +...+.+++.
T Consensus 80 ~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~---f~~~~~~~~~~~~~~~~~~ 156 (274)
T cd07938 80 ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTA---FGCPYEGEVPPERVAEVAE 156 (274)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeE---ecCCCCCCCCHHHHHHHHH
Confidence 333333 454 333333320 111223555666788999999999875432110 011221 2333445544
Q ss_pred -HHHhCcceeEeeccccCCCCHHHHHHHHHHHHHH
Q 010610 404 -AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (506)
Q Consensus 404 -av~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~ 437 (506)
+...|+|.+-|. +|.=.-.|.+.-+.+..+...
T Consensus 157 ~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 157 RLLDLGCDEISLG-DTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHcCCCEEEEC-CCCCccCHHHHHHHHHHHHHH
Confidence 566799999995 888888899988888777644
No 422
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.29 E-value=2e+02 Score=30.44 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCCCccCHHHh--------HhhHhcCCcEEEEcc-------------CCCH----------------HHHHHHHHHHHh-
Q 010610 272 PSITEKDWDDI--------KFGVDNKVDFYAVSF-------------VKDA----------------QVVHELKNYLKS- 313 (506)
Q Consensus 272 p~ltekD~~dI--------~~al~~gvD~IalSf-------------V~sa----------------edV~~lr~~l~~- 313 (506)
..||..|++.| +.+.+.|+|+|-+.+ .+.. |-++.+|+.+..
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 45787787776 456779999996643 2221 123333333320
Q ss_pred cCCCceEEEecCCh----------hhhhhHHHHHHh-CCEEEEcCCCcccCCCC-Cc-HHHHHHHHHHHHHHcCCcEEEE
Q 010610 314 CGADIHVIVKIESA----------DSIPNLHSIITA-SDGAMVARGDLGAELPI-EE-VPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 314 ~~~~i~IIaKIEt~----------~aveNldeIl~~-sDGImIaRGDLgvelg~-e~-V~~~Qk~II~~c~~~GkPvivA 380 (506)
...+..|..+|--. +.++-+..+-+. .|.|=|..|.....-.. .. -....+. ++++...++||+..
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~-ik~~~~~~iPVi~~ 290 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMEL-VKERIAGRLPLIAV 290 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHH-HHHHhCCCCCEEEE
Confidence 01466677776532 222222333222 68888877654321111 11 1111122 22222237898876
Q ss_pred ehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 381 TNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 381 TqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
..+- |.+ +...++..|+|+|++.
T Consensus 291 Ggi~---------t~e---~ae~~l~~gaD~V~~g 313 (353)
T cd04735 291 GSIN---------TPD---DALEALETGADLVAIG 313 (353)
T ss_pred CCCC---------CHH---HHHHHHHcCCChHHHh
Confidence 4321 222 3556777799999874
No 423
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=43.22 E-value=81 Score=32.40 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH-hCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~-~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivAT 381 (506)
-++.+++.+.+.|.++.|.+- +..---+|+++++. -.|.|+.+-++ +.....+.+.|+++++|+|.+.
T Consensus 85 Kve~~~~rl~~INP~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD~----------~~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVV-DDFITPDNVAEYMSAGFSYVIDAIDS----------VRPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEC
Confidence 455667777777877766542 32222457777774 36777766332 2345578899999999999774
Q ss_pred hhhhhhhcCCCCChhhcccHHHH
Q 010610 382 NMLESMIVHPTPTRAEVSDIAIA 404 (506)
Q Consensus 382 qmLeSMi~~~~PtRAEv~Dvana 404 (506)
- .-....||+-+++|++..
T Consensus 154 G----ag~k~dp~~~~~~di~~t 172 (268)
T PRK15116 154 G----AGGQIDPTQIQVVDLAKT 172 (268)
T ss_pred C----cccCCCCCeEEEEeeecc
Confidence 3 234569999999998763
No 424
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=42.87 E-value=63 Score=33.95 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=40.2
Q ss_pred HhHhhHhcCCcEEEEccCCCHHH-------HHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh--CCEEEEcCCCcc
Q 010610 281 DIKFGVDNKVDFYAVSFVKDAQV-------VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLG 351 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~saed-------V~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDGImIaRGDLg 351 (506)
..+.+.+.|++.+.+= .|++.+ ...++++-+.. .++.||+-= .....+...+.++. +||+|||||=|+
T Consensus 157 ia~~~~~~g~~~ltVH-gRtr~~~y~~~ad~~~I~~vk~~~-~~ipvi~NG-dI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 157 IARILEDAGADALTVH-GRTRAQGYLGPADWDYIKELKEAV-PSIPVIANG-DIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHHhcCCCEEEEe-cccHHhcCCCccCHHHHHHHHHhC-CCCeEEeCC-CcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 3345667889998773 455433 33333332222 227777731 01134556677776 799999999764
Q ss_pred c
Q 010610 352 A 352 (506)
Q Consensus 352 v 352 (506)
.
T Consensus 234 n 234 (323)
T COG0042 234 N 234 (323)
T ss_pred C
Confidence 3
No 425
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=42.64 E-value=49 Score=33.66 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCeeE
Q 010610 123 REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVR 180 (506)
Q Consensus 123 ~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkIR 180 (506)
.+..++|+++|.++.=+|+.-...++++++...|+.+.+..+ ++|.+|+.-|++-
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~---~plsIDT~~~~v~ 82 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVD---VPLCIDSPNPAAI 82 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCC---CCEEEeCCCHHHH
Confidence 456677899999999999986666778888888888876554 5689998777653
No 426
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=42.38 E-value=86 Score=31.54 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCcEEEEeCCCC--------ChHHHHHHHHHHHHHHHhcCCceEEEEeecCCCee
Q 010610 123 REMIWKLAEAGMNVARLNMSHG--------DHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEV 179 (506)
Q Consensus 123 ~e~i~~li~aGm~v~RiN~SHg--------~~e~~~~~i~~ir~~~~~~~~~~i~Il~DL~GPkI 179 (506)
.+..++|+++|.++.=+|+.-. ..++++++...|+.+.+..+ ++|.+|+.=|++
T Consensus 27 ~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~---~piSIDT~~~~v 88 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPD---VPISVDTFNAEV 88 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCC---CeEEEeCCcHHH
Confidence 3455779999999999997554 45778888888888765544 568999866653
No 427
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=42.25 E-value=1.1e+02 Score=30.11 Aligned_cols=46 Identities=35% Similarity=0.447 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCC
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 421 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G 421 (506)
.-.++++.|+++|.|++=-. -+| +++..|...|+|.+=+=--...|
T Consensus 89 ~~~~v~~~~~~~~i~~iPG~---------~Tp-----tEi~~A~~~G~~~vK~FPA~~~G 134 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIPGV---------MTP-----TEIMQALEAGADIVKLFPAGALG 134 (196)
T ss_dssp --HHHHHHHHHHTSEEEEEE---------SSH-----HHHHHHHHTT-SEEEETTTTTTT
T ss_pred CCHHHHHHHHHcCCcccCCc---------CCH-----HHHHHHHHCCCCEEEEecchhcC
Confidence 44789999999999988421 123 34889999999999884333333
No 428
>PRK05638 threonine synthase; Validated
Probab=42.16 E-value=2.7e+02 Score=30.37 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=63.9
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+++|.|+.+. .|..+....+...-..|++.+... |.| -++++...+++++ ...++.
T Consensus 127 lA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~~-~~~~~~a~~~~~~--~~~~~~ 187 (442)
T PRK05638 127 VAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ESV-DEAIEYAEELARL--NGLYNV 187 (442)
T ss_pred HHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CCH-HHHHHHHHHHHHh--CCeEec
Confidence 456789999999987 344444445677888899988773 444 5777777766433 111111
Q ss_pred CCCCCCCcCcCCChHHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHh
Q 010610 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSH 493 (506)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a-~Iiv~T~sG~tA~~lS~ 493 (506)
..+. .....+....-+.+++++++. .||+.+-+|.+..-+.+
T Consensus 188 ~~~~------np~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~ 230 (442)
T PRK05638 188 TPEY------NIIGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYK 230 (442)
T ss_pred CCCC------ChhHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHH
Confidence 1111 111222333345577888888 99999999998855544
No 429
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.10 E-value=3.7e+02 Score=26.94 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=84.0
Q ss_pred CccCHHHh-HhhHhcCCcEEEEccC------------CCHHHHHHHHHHHHhcCCCceEEEecCChhh-hhhHHHHHHh-
Q 010610 275 TEKDWDDI-KFGVDNKVDFYAVSFV------------KDAQVVHELKNYLKSCGADIHVIVKIESADS-IPNLHSIITA- 339 (506)
Q Consensus 275 tekD~~dI-~~al~~gvD~IalSfV------------~saedV~~lr~~l~~~~~~i~IIaKIEt~~a-veNldeIl~~- 339 (506)
+..++..| +...+.|+|.|=+.|. ....+.+.++.+.+. ....++.+.+...-+ .+.++..++.
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~~g 98 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLLLPGIGTVDDLKMAADLG 98 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEecCCccCHHHHHHHHHcC
Confidence 34444444 4556789999877532 112233333333332 233454444211010 2333333333
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHH-HHhCcceeEeeccc
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGET 418 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvana-v~dG~D~vmLs~ET 418 (506)
.|.+-|. .+..++. ..+..++.+++.|..+.+.-. +. ..=+..++.+.+.. ...|+|.+.| .+|
T Consensus 99 ~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~~~----~~--~~~~~~~~~~~~~~~~~~G~d~i~l-~DT 163 (263)
T cd07943 99 VDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGFLM----MS--HMASPEELAEQAKLMESYGADCVYV-TDS 163 (263)
T ss_pred CCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEEEE----ec--cCCCHHHHHHHHHHHHHcCCCEEEE-cCC
Confidence 5766553 3444444 346689999999998766531 11 12244666666665 4459999988 699
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q 010610 419 AHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 419 A~G~yPveaV~~m~~I~~~aE 439 (506)
.=.-+|.+.-+.+..+-+...
T Consensus 164 ~G~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 164 AGAMLPDDVRERVRALREALD 184 (263)
T ss_pred CCCcCHHHHHHHHHHHHHhCC
Confidence 989999888887777765443
No 430
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=42.10 E-value=1.5e+02 Score=23.56 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=41.6
Q ss_pred CCeEecCCCEEEEEEec-CCCCceEEEe-ccchhhhhcCCCCEEEEeCCeEEEEEEEEe---CCeEEEEEeeCc
Q 010610 186 QPITLTSGQEFTFTIQR-GVGSAECVSV-NYDDFVNDVEVGDMLLVDGGMMSLLVKSKT---EDSVKCEVVDGG 254 (506)
Q Consensus 186 ~~i~Lk~G~~v~lt~~~-~~~~~~~i~v-~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~---~~~v~~~V~~gG 254 (506)
..+.++.|+.++|...- +....+..|. +...+.. ...-.+..+++.-.|.+..+. .+...|.+.+.+
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 57899999999998762 2222233333 3222222 223355666788888888764 456899998863
No 431
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=42.07 E-value=3e+02 Score=28.66 Aligned_cols=129 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEeh
Q 010610 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 304 V~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATq 382 (506)
+..++.+.++. .++|...+.+...++.+..=++. .+-||+. |-.+|+++=...-+++++.|+.+|..|=-==.
T Consensus 63 ~~~~~~~a~~~--~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG 136 (286)
T PRK12738 63 YALCSAYSTTY--NMPLALHLDHHESLDDIRRKVHAGVRSAMID----GSHFPFAENVKLVKSVVDFCHSQDCSVEAELG 136 (286)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCeEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Q ss_pred hhhhhhcC-CCCC----hhhcccHHHHHHh-CcceeEeeccccCCCC---HHHHHHHHHHHHHHH
Q 010610 383 MLESMIVH-PTPT----RAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (506)
Q Consensus 383 mLeSMi~~-~~Pt----RAEv~Dvanav~d-G~D~vmLs~ETA~G~y---PveaV~~m~~I~~~a 438 (506)
.+..=... ..-. .....+...++.. |+|++-.+-=|+.|.| |---...+.+|....
T Consensus 137 ~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~ 201 (286)
T PRK12738 137 RLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV 201 (286)
T ss_pred eeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh
No 432
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=41.91 E-value=55 Score=41.09 Aligned_cols=136 Identities=14% Similarity=0.034 Sum_probs=87.8
Q ss_pred CccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEE---ccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHH
Q 010610 260 RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAV---SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSI 336 (506)
Q Consensus 260 KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~Ial---SfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeI 336 (506)
.|=.||+.++. .++..+ +.+..|+|.|.= .-+.|.+|+.++..-|++.+...+|-.|+=...++..+..-
T Consensus 943 ~GG~Lpg~KV~------~~IA~~-R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~g 1015 (1485)
T PRK11750 943 EGGQLPGDKVN------PLIARL-RYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATG 1015 (1485)
T ss_pred CCCcCccccCC------HHHHHH-cCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhC
Confidence 34456666653 112222 234457776643 34668889888888888888888999999887788776643
Q ss_pred -HHh-CCEEEEcCCCccc---------CCCCC---cHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHH
Q 010610 337 -ITA-SDGAMVARGDLGA---------ELPIE---EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIA 402 (506)
Q Consensus 337 -l~~-sDGImIaRGDLgv---------elg~e---~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dva 402 (506)
+++ +|.|.|.-+|=|. ..|++ -+..+++.+...-.+....+++..++. | -.|++
T Consensus 1016 vaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~---------t---~~Dv~ 1083 (1485)
T PRK11750 1016 VAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLK---------T---GLDVI 1083 (1485)
T ss_pred hhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcC---------C---HHHHH
Confidence 333 8999998665432 22222 366666666655555556666665543 1 25899
Q ss_pred HHHHhCcceeEe
Q 010610 403 IAVREGADAVML 414 (506)
Q Consensus 403 nav~dG~D~vmL 414 (506)
.|+..|||.+-.
T Consensus 1084 kA~aLGAd~~~~ 1095 (1485)
T PRK11750 1084 KAAILGAESFGF 1095 (1485)
T ss_pred HHHHcCCccccc
Confidence 999999998754
No 433
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=41.78 E-value=3.9e+02 Score=28.72 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEeh
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATq 382 (506)
.++.++++.++. .+.+++-+-+.+.++-+.+ .+|.+-||-+++-- -.+++++.+.||||++.|.
T Consensus 153 gl~~L~~~~~e~--Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~G 216 (352)
T PRK13396 153 ALELLAAAREAT--GLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHHHHHHHc--CCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeCC
Confidence 344455544443 4678887777777766655 47999999666532 3447888889999999875
Q ss_pred hhhhhhcCCCCChhhcccHHHHHHh-CcceeEeecc---ccCCCCHH
Q 010610 383 MLESMIVHPTPTRAEVSDIAIAVRE-GADAVMLSGE---TAHGKFPL 425 (506)
Q Consensus 383 mLeSMi~~~~PtRAEv~Dvanav~d-G~D~vmLs~E---TA~G~yPv 425 (506)
|. +|-.|+...+..+.. |.+-++|..= |-...||.
T Consensus 217 ~~--------~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~ 255 (352)
T PRK13396 217 MA--------ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTR 255 (352)
T ss_pred CC--------CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCC
Confidence 43 467888888887764 7766777533 33336773
No 434
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=41.77 E-value=3.4e+02 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
...+.++.++++|++|.+.| ..+.+ +.-.++..|+|+++-
T Consensus 189 ~~~~~v~~~~~~G~~v~~wT----------vn~~~---~~~~l~~~GVdgi~T 228 (233)
T cd08582 189 LNPAFIKALRDAGLKLNVWT----------VDDAE---DAKRLIELGVDSITT 228 (233)
T ss_pred CCHHHHHHHHHCCCEEEEEe----------CCCHH---HHHHHHHCCCCEEEc
Confidence 45688999999999999987 22233 356788899999763
No 435
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=41.74 E-value=4.2e+02 Score=27.94 Aligned_cols=118 Identities=16% Similarity=0.241 Sum_probs=79.0
Q ss_pred CceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE-ehh--h-hhhhcCC
Q 010610 317 DIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNM--L-ESMIVHP 391 (506)
Q Consensus 317 ~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA-Tqm--L-eSMi~~~ 391 (506)
.++|...+.+..-++.+.+-++. .+-||+. |-.+|+++=...-+++++.|+.+|..|=-= .++ - +......
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (307)
T PRK05835 74 HIPVALHLDHGTTFESCEKAVKAGFTSVMID----ASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE 149 (307)
T ss_pred CCeEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccc
Confidence 47899999998876666655555 6799997 446788888888899999999999886210 001 0 0000000
Q ss_pred C-CChhhcccHHHHHHh-CcceeEeeccccCCCCH-----HHHHHHHHHHHHHH
Q 010610 392 T-PTRAEVSDIAIAVRE-GADAVMLSGETAHGKFP-----LKAVKVMHTVSLRT 438 (506)
Q Consensus 392 ~-PtRAEv~Dvanav~d-G~D~vmLs~ETA~G~yP-----veaV~~m~~I~~~a 438 (506)
. -......+...++.. |+|++-.|-=|+.|.|+ .--...|.+|.+..
T Consensus 150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~ 203 (307)
T PRK05835 150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT 203 (307)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh
Confidence 0 001113346677864 99999999999999995 45566777776555
No 436
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=41.55 E-value=1.2e+02 Score=24.91 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=38.3
Q ss_pred CeEecCCCEEEEEEec-CCCCceEEEeccchhhhhcCCCCEEEEeCCeEEE-EEE-----EEeCCeEEEEEeeC--cEeC
Q 010610 187 PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSL-LVK-----SKTEDSVKCEVVDG--GELK 257 (506)
Q Consensus 187 ~i~Lk~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l-~V~-----~~~~~~v~~~V~~g--G~L~ 257 (506)
...+.+|+.++|...- +.......|.-....+..-..+....+.+|.+.+ .+. ..+.+...|.+.|+ |.+.
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 4567789999998762 1112233333222222211112244456665443 332 23456789999998 7776
Q ss_pred CC
Q 010610 258 SR 259 (506)
Q Consensus 258 s~ 259 (506)
++
T Consensus 88 s~ 89 (95)
T cd05722 88 SR 89 (95)
T ss_pred Ee
Confidence 54
No 437
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.51 E-value=74 Score=31.69 Aligned_cols=86 Identities=16% Similarity=0.063 Sum_probs=49.9
Q ss_pred HHHhHhhHhcCCcEEEEccCCC-----HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHH---HHh--CCEEEEcCC
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSI---ITA--SDGAMVARG 348 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~s-----aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeI---l~~--sDGImIaRG 348 (506)
.+.++...+.|++.+.+.-+.+ .-|...+++..+.. .+++|+- -++.+.+++ ++. +||+|+|+.
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~--~ipvia~----GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAV--NVPVIAS----GGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC--CCCEEEE----CCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 3455667788999887754432 22344444444322 4566662 234444444 432 799999988
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHHcCCcE
Q 010610 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAV 377 (506)
Q Consensus 349 DLgvelg~e~V~~~Qk~II~~c~~~GkPv 377 (506)
..--.+++++ +...|++.|.++
T Consensus 230 l~~~~~~~~~-------~~~~~~~~~~~~ 251 (253)
T PRK02083 230 FHFGEITIGE-------LKAYLAEQGIPV 251 (253)
T ss_pred HHcCCCCHHH-------HHHHHHHCCCcc
Confidence 7666666554 345555677765
No 438
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=41.33 E-value=1.2e+02 Score=31.43 Aligned_cols=112 Identities=15% Similarity=0.270 Sum_probs=67.0
Q ss_pred hHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHH
Q 010610 285 GVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQE 364 (506)
Q Consensus 285 al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk 364 (506)
++..|+|.+-+ |.+ .+-..-++.|. .+..|-.=.-...+++-++..+.-.+++.||+| ||-+ +.+....+
T Consensus 53 a~~~GaDL~Hi-FCe-~~Aa~vIKsYs----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~i~ 122 (306)
T KOG3974|consen 53 ALRVGADLSHI-FCE-PEAAVVIKSYS----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKEIA 122 (306)
T ss_pred HHHhccceeee-eec-hhHHHHHhhcC----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHHHH
Confidence 45567775432 222 22233344443 344444444445588888888888999999987 3331 35667778
Q ss_pred HHHHHHHHcCCcEEE-------EehhhhhhhcCC-----CCChhhcccHHHHHH
Q 010610 365 EIIRTCRSMGKAVIV-------ATNMLESMIVHP-----TPTRAEVSDIAIAVR 406 (506)
Q Consensus 365 ~II~~c~~~GkPviv-------ATqmLeSMi~~~-----~PtRAEv~Dvanav~ 406 (506)
.|++-|+..++|+.+ .+|-.|-|+..- +|.--|-..+..+++
T Consensus 123 ~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 123 KILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred HHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhh
Confidence 899999999999765 344444443321 455555444554444
No 439
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=41.33 E-value=3.4e+02 Score=28.19 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=76.5
Q ss_pred CCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh---hhh-hcC
Q 010610 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML---ESM-IVH 390 (506)
Q Consensus 316 ~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL---eSM-i~~ 390 (506)
..++|...+.....++.+.+=++. .+-||+.- -.+|+++=...-+++++.|+..|.+|=-==..+ |.- ...
T Consensus 76 ~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDg----S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~ 151 (288)
T TIGR00167 76 YGVPVALHLDHGASEEDCAQAVKAGFSSVMIDG----SHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVA 151 (288)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHcCCCEEEecC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccc
Confidence 367888998888765554444443 57899973 356888888888999999999999873210001 000 000
Q ss_pred CCC-ChhhcccHHHHHHh-CcceeEeeccccCCCC---HH-HHHHHHHHHHHHH
Q 010610 391 PTP-TRAEVSDIAIAVRE-GADAVMLSGETAHGKF---PL-KAVKVMHTVSLRT 438 (506)
Q Consensus 391 ~~P-tRAEv~Dvanav~d-G~D~vmLs~ETA~G~y---Pv-eaV~~m~~I~~~a 438 (506)
... ......+...|+.. |+|++-.+-=|+.|.| |. --...+.+|.+..
T Consensus 152 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v 205 (288)
T TIGR00167 152 DESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV 205 (288)
T ss_pred cccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 000 01112246667764 9999999999999999 44 4556666665555
No 440
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=41.29 E-value=3.4e+02 Score=26.34 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=36.6
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhh
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIP 331 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~ave 331 (506)
++...+.|+|++.+.-.-..+-++.+.+..++.|..+.+++..=++.+.+
T Consensus 69 ~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~ 118 (213)
T TIGR01740 69 YESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLD 118 (213)
T ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhh
Confidence 34456899999999987777778888888776665666777666665543
No 441
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=41.12 E-value=67 Score=34.72 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=51.0
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHH------HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQ------VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~sae------dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaR 347 (506)
+.+|.+.+++.|+|+|.+|...-.. -+..+.+..+..+.++.||+ -.|+.+=.+|+++ +|++|+||
T Consensus 255 s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~----dGGIr~g~Di~KALaLGA~~V~iGr 330 (381)
T PRK11197 255 DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILA----DSGIRNGLDVVRMIALGADTVLLGR 330 (381)
T ss_pred CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEe----eCCcCcHHHHHHHHHcCcCceeEhH
Confidence 4566778888999999888643221 12222222222334566666 2456666666554 78888887
Q ss_pred CCccc--CCCCC----cHHHHHHHHHHHHHHcCCc
Q 010610 348 GDLGA--ELPIE----EVPLLQEEIIRTCRSMGKA 376 (506)
Q Consensus 348 GDLgv--elg~e----~V~~~Qk~II~~c~~~GkP 376 (506)
.=|-. .-|.+ .+...++++-......|..
T Consensus 331 ~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 365 (381)
T PRK11197 331 AFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAK 365 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 64422 12322 2334444444444455544
No 442
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=41.03 E-value=2.2e+02 Score=28.55 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=74.6
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHH--------
Q 010610 292 FYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQ-------- 363 (506)
Q Consensus 292 ~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Q-------- 363 (506)
.|.+=-..+.++...+-+.|-+.|- ..|=.-.-|+.+.+-|.++.+....++||-|-. +..+.+..++
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~gGi-~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIEGGI-PAIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFIV 90 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCC-CeEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEEE
Confidence 4556666788888888777766443 245556789999999999999888888887743 3333333333
Q ss_pred -----HHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 364 -----EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 364 -----k~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
.++++.|+.+|.|++=-. -+| +++..|...|++++=+
T Consensus 91 sP~~~~ev~~~a~~~~ip~~PG~---------~Tp-----tEi~~Ale~G~~~lK~ 132 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPYIPGV---------ATP-----TEIMAALELGASALKF 132 (211)
T ss_pred CCCCCHHHHHHHHhCCCcccCCC---------CCH-----HHHHHHHHcChhheee
Confidence 689999999999987211 123 3477899999998765
No 443
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=40.92 E-value=58 Score=28.63 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=32.2
Q ss_pred cchhhhhcCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeC
Q 010610 214 YDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (506)
Q Consensus 214 ~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~~gG~L~ 257 (506)
+.++.+.+++||+|.--.| |.-+|+++.++.++.++-.+..++
T Consensus 37 ~~~ml~sL~kGD~VvT~gG-i~G~V~~v~d~~v~I~l~~~~~i~ 79 (97)
T COG1862 37 HQELLNSLKKGDEVVTIGG-IVGTVTKVGDDTVEIELGDGTKIK 79 (97)
T ss_pred HHHHHHhccCCCEEEEcCC-eEEEEEEEecCcEEEEECCCeEEE
Confidence 4578899999999999887 456788888887665555455554
No 444
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=40.80 E-value=1.6e+02 Score=28.63 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
+.+.+++.++++|+++++.| + -+..++..++..|+|+++-
T Consensus 188 ~~~~~i~~~~~~g~~v~~Wt------v-------n~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 188 LTEEVVEELKKRGIPVRLWT------V-------NEEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred cCHHHHHHHHHCCCEEEEEe------c-------CCHHHHHHHHHCCCCEEeC
Confidence 56889999999999999987 1 1224467888899999873
No 445
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=40.79 E-value=52 Score=28.16 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCCeEecCCCEEEEEEecCCCCceEEEeccchhhhhcCCCCE
Q 010610 185 PQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDM 226 (506)
Q Consensus 185 ~~~i~Lk~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~ 226 (506)
+..+.+++|+.++|+..+.......+.+..-++-..+.+|+.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~~~l~~g~~ 75 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGISKVLPPGET 75 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEEEEE-TT-E
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEECCCceEEEECCCCE
Confidence 457999999988887764433345666665555556666654
No 446
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=40.79 E-value=5.8e+02 Score=28.77 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=80.7
Q ss_pred CccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEc-cCCCHHHHHHHHHHHHhcCCCce-EE----EecCChhhhhhH
Q 010610 260 RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVS-FVKDAQVVHELKNYLKSCGADIH-VI----VKIESADSIPNL 333 (506)
Q Consensus 260 KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalS-fV~saedV~~lr~~l~~~~~~i~-II----aKIEt~~aveNl 333 (506)
+|-|++|.. +.| .+--..+++.+.++|+|++-+. .+++.+.++...+.+++.|.+.. -| +..=|.+-+.++
T Consensus 84 Rg~N~vGy~-~y~--ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~ 160 (499)
T PRK12330 84 RGQNLLGYR-HYE--DEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQ 160 (499)
T ss_pred cccccCCcc-Ccc--hhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHH
Confidence 467888764 223 1223568889999999987543 34555666666667777777542 11 112223332222
Q ss_pred -HHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc---CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhC
Q 010610 334 -HSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM---GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG 408 (506)
Q Consensus 334 -deIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~---GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG 408 (506)
.++.+. +|.|-|+ |-.-- -.|..-.+++++.++. +.|+.+.|+ ...--|-.+ ...|+..|
T Consensus 161 a~~l~~~Gad~I~Ik--DtaGl----l~P~~~~~LV~~Lk~~~~~~ipI~~H~H--------nt~GlA~An-~laAieAG 225 (499)
T PRK12330 161 AKRLLDMGADSICIK--DMAAL----LKPQPAYDIVKGIKEACGEDTRINLHCH--------STTGVTLVS-LMKAIEAG 225 (499)
T ss_pred HHHHHHcCCCEEEeC--CCccC----CCHHHHHHHHHHHHHhCCCCCeEEEEeC--------CCCCcHHHH-HHHHHHcC
Confidence 222222 5666663 43222 3444555556555554 589999874 233333222 22377888
Q ss_pred cceeEee----ccccCCCCHHHHHHH
Q 010610 409 ADAVMLS----GETAHGKFPLKAVKV 430 (506)
Q Consensus 409 ~D~vmLs----~ETA~G~yPveaV~~ 430 (506)
+|.+=-+ +|-+ |+=|.|.+-.
T Consensus 226 ad~vDtai~Glg~~a-Gn~atE~vv~ 250 (499)
T PRK12330 226 VDVVDTAISSMSLGP-GHNPTESLVE 250 (499)
T ss_pred CCEEEeecccccccc-cchhHHHHHH
Confidence 8865321 2322 5555555443
No 447
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=40.55 E-value=5e+02 Score=28.36 Aligned_cols=128 Identities=14% Similarity=0.211 Sum_probs=77.3
Q ss_pred hcCCcEEEEccCCC-HH-------HHHHHHHHHHhcCCCceEEEe-----cCChhhhhhHHHHHHhCCE--EEEcCCCcc
Q 010610 287 DNKVDFYAVSFVKD-AQ-------VVHELKNYLKSCGADIHVIVK-----IESADSIPNLHSIITASDG--AMVARGDLG 351 (506)
Q Consensus 287 ~~gvD~IalSfV~s-ae-------dV~~lr~~l~~~~~~i~IIaK-----IEt~~aveNldeIl~~sDG--ImIaRGDLg 351 (506)
+.|+|+|++-...+ ++ +..++.+-+.+ ..++++|.- -..+ +-+++.++++.| .+|....+
T Consensus 151 ~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~-av~vPLIL~gsg~~~kD~---eVLeaaLe~~~G~kpLL~SAt~- 225 (389)
T TIGR00381 151 EFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQ-AVDVPIVIGGSGNPEKDP---LVLEKAAEVAEGERCLLASANL- 225 (389)
T ss_pred HhCCCEEEEEecCCCccccccCHHHHHHHHHHHHH-hCCCCEEEeCCCCCcCCH---HHHHHHHHHhCCCCcEEEecCc-
Confidence 68999999998776 44 44444443322 123333322 2333 346777888766 67653332
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcEEEEeh----hhhhhhcCCCCChhhcccHHHHHHhCcc--eeEeeccc-cCCCCH
Q 010610 352 AELPIEEVPLLQEEIIRTCRSMGKAVIVATN----MLESMIVHPTPTRAEVSDIAIAVREGAD--AVMLSGET-AHGKFP 424 (506)
Q Consensus 352 velg~e~V~~~Qk~II~~c~~~GkPvivATq----mLeSMi~~~~PtRAEv~Dvanav~dG~D--~vmLs~ET-A~G~yP 424 (506)
++ --+.+...|+++|.|+++.+. ++-++.. .....|.. -+++-.=| +.|.=.
T Consensus 226 -----e~---Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~-------------kL~~~Gv~~eDIVlDP~t~alG~Gi 284 (389)
T TIGR00381 226 -----DL---DYEKIANAAKKYGHVVLSWTIMDINMQKTLNR-------------YLLKRGLMPRDIVMDPTTCALGYGI 284 (389)
T ss_pred -----hh---hHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHH-------------HHHHcCCCHHHEEEcCCCccccCCH
Confidence 21 467899999999999999872 2222111 14456776 66665444 345555
Q ss_pred HHHHHHHHHHHHHHhc
Q 010610 425 LKAVKVMHTVSLRTEA 440 (506)
Q Consensus 425 veaV~~m~~I~~~aE~ 440 (506)
..++.+|.+|-+.|=+
T Consensus 285 eya~s~~erIRraALk 300 (389)
T TIGR00381 285 EFSITNMERIRLSGLK 300 (389)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6788888887766654
No 448
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=40.35 E-value=1.2e+02 Score=31.05 Aligned_cols=84 Identities=26% Similarity=0.277 Sum_probs=54.3
Q ss_pred CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeecccc
Q 010610 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (506)
Q Consensus 340 sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA 419 (506)
+..+|---.-.|--.|+.. +...+.|++. ...|||+-. ..-+. +|++.+...|+|+|+++.-.|
T Consensus 145 caavMPlgsPIGSg~Gi~n-~~~l~~i~~~---~~vPvIvDA---------GiG~p---Sdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN-PYNLRIIIER---ADVPVIVDA---------GIGTP---SDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SST-HHHHHHHHHH---GSSSBEEES------------SH---HHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCC-HHHHHHHHHh---cCCcEEEeC---------CCCCH---HHHHHHHHcCCceeehhhHHh
Confidence 5577765444555555544 3445555444 489999864 23333 579999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 010610 420 HGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 420 ~G~yPveaV~~m~~I~~~aE 439 (506)
..+.|+.-.+-|+.-++.-.
T Consensus 209 ~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp TSSSHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999988887766554433
No 449
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=40.27 E-value=3.3e+02 Score=30.09 Aligned_cols=129 Identities=16% Similarity=0.076 Sum_probs=72.7
Q ss_pred HhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCCCcccCCC---
Q 010610 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELP--- 355 (506)
Q Consensus 283 ~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRGDLgvelg--- 355 (506)
+.|.+.|+|+|-++.= .-.+.++|+.+ +.+..|=. +..+++|+..+ +|.|.+|+-.=.-.=|
T Consensus 361 ~lA~~~~adGvHl~~~--d~~~~~~r~~~---~~~~~iG~------S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~ 429 (502)
T PLN02898 361 DVALACDADGVHLGQS--DMPVRLARSLL---GPGKIIGV------SCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNK 429 (502)
T ss_pred HHHHhcCCCEEEeChH--hcCHHHHHHhc---CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCC
Confidence 4667778899988741 11234455443 33322322 23455665554 6999988642211111
Q ss_pred CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcc---eeEeeccccCCCCHHHHHHHHH
Q 010610 356 IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGAD---AVMLSGETAHGKFPLKAVKVMH 432 (506)
Q Consensus 356 ~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D---~vmLs~ETA~G~yPveaV~~m~ 432 (506)
.-.+ ...+++ +.....||+....+ +. .++..+...|+| ++.+.+.-..=..|.++++.+.
T Consensus 430 ~~g~-~~~~~~---~~~~~~Pv~aiGGI----------~~---~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~ 492 (502)
T PLN02898 430 TIGL-DGLREV---CEASKLPVVAIGGI----------SA---SNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLH 492 (502)
T ss_pred CCCH-HHHHHH---HHcCCCCEEEECCC----------CH---HHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHH
Confidence 0011 112222 44567898765321 22 234566667777 9998777655577999999998
Q ss_pred HHHHHHh
Q 010610 433 TVSLRTE 439 (506)
Q Consensus 433 ~I~~~aE 439 (506)
+++.+..
T Consensus 493 ~~~~~~~ 499 (502)
T PLN02898 493 AILTEAL 499 (502)
T ss_pred HHHHHHh
Confidence 8876654
No 450
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=40.24 E-value=3e+02 Score=28.49 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=77.6
Q ss_pred CCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh---hhhhcCC
Q 010610 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML---ESMIVHP 391 (506)
Q Consensus 316 ~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL---eSMi~~~ 391 (506)
.+++|...+.+...++.+..-+.. .+.||+.-. .+|+++=...-+++++.|+++|..|=.==..+ |..+.+.
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~ 147 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGS----ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESE 147 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-T----TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSS
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCcccccccCC----cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccc
Confidence 368999999998887777666665 789999744 66888888889999999999998874211111 1111111
Q ss_pred CCChhhcc---cHHHHH-HhCcceeEeeccccCCCCHH-----HHHHHHHHHHHHH
Q 010610 392 TPTRAEVS---DIAIAV-REGADAVMLSGETAHGKFPL-----KAVKVMHTVSLRT 438 (506)
Q Consensus 392 ~PtRAEv~---Dvanav-~dG~D~vmLs~ETA~G~yPv-----eaV~~m~~I~~~a 438 (506)
.-+-+-.+ ++..++ .-|+|++-.|-=|+.|.|+- -=+..+.+|.+.+
T Consensus 148 ~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 148 EETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp TT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 10011123 344565 67999999999999999987 3467777777766
No 451
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=40.09 E-value=5.1e+02 Score=28.01 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcce--eEeeccccCCCCHHHHHHHHHHHHHHHhccc
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA--VMLSGETAHGKFPLKAVKVMHTVSLRTEATI 442 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~--vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~ 442 (506)
-+...|+..|.|+.+. .|..+...-+...-..|++. +.+.+ ...-++++...+++++-. .
T Consensus 78 a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~vv~v~~~g-----~~~~~a~~~a~~~~~~~g-~- 139 (409)
T TIGR02079 78 GFAYACRHLGVHGTVF-----------MPATTPKQKIDRVKIFGGEFIEIILVG-----DTFDQCAAAAREHVEDHG-G- 139 (409)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCCeeEEEEeC-----CCHHHHHHHHHHHHHhcC-C-
Confidence 4556799999999986 23333333355667789985 34433 233467666666654422 1
Q ss_pred cCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 443 TGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
++-..|.+ ....+....-+.++.++++ . .||+..-+|.+. +.+-.++|...|+++-|
T Consensus 140 ~~~~~~~~------~~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep 203 (409)
T TIGR02079 140 TFIPPFDD------PRIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEP 203 (409)
T ss_pred EEeCCCCC------HhHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 11111111 1122223334667788775 5 888888787765 44455689999999865
No 452
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=40.01 E-value=4.2e+02 Score=27.00 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=72.2
Q ss_pred HHHhHhhHhcCCcEEEEccCCCH---------------HHHHHHHHHHHhcCCCceEE------EecCChhhhhhHHHHH
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVI------VKIESADSIPNLHSII 337 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~sa---------------edV~~lr~~l~~~~~~i~II------aKIEt~~aveNldeIl 337 (506)
.+|++.+++.|+|.|.+.+--|. +.+.+..++.++.|..+.+- .-.++.--.+-+-+++
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~ 155 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVA 155 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHH
Confidence 56899999999999888876554 22333345556666543211 1122222233333333
Q ss_pred Hh-----CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHc--CCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcc
Q 010610 338 TA-----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGAD 410 (506)
Q Consensus 338 ~~-----sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~--GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D 410 (506)
+. +|.|-++ |= .|. -.|.--.++++..++. +.|+.+.++ ...--|-.+ ..-|+..|+|
T Consensus 156 ~~~~~~Ga~~i~l~--DT---~G~-~~P~~v~~lv~~l~~~~~~~~i~~H~H--------nd~GlA~AN-~laA~~aGa~ 220 (274)
T cd07938 156 ERLLDLGCDEISLG--DT---IGV-ATPAQVRRLLEAVLERFPDEKLALHFH--------DTRGQALAN-ILAALEAGVR 220 (274)
T ss_pred HHHHHcCCCEEEEC--CC---CCc-cCHHHHHHHHHHHHHHCCCCeEEEEEC--------CCCChHHHH-HHHHHHhCCC
Confidence 32 4555553 32 222 2344444455554443 478888874 333333111 2237888888
Q ss_pred eeEe--e--c------cccCCCCHHHHHHHH
Q 010610 411 AVML--S--G------ETAHGKFPLKAVKVM 431 (506)
Q Consensus 411 ~vmL--s--~------ETA~G~yPveaV~~m 431 (506)
.+=- + | | ..|+=|.|.+-++
T Consensus 221 ~id~t~~GlGgcpfa~e-raGN~~~E~lv~~ 250 (274)
T cd07938 221 RFDSSVGGLGGCPFAPG-ATGNVATEDLVYM 250 (274)
T ss_pred EEEEeccccCCCCCCCC-ccCCcCHHHHHHH
Confidence 6542 1 1 3 5788888866543
No 453
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=40.00 E-value=95 Score=32.97 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=39.4
Q ss_pred HhHhhHhcCCcEEEEccCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCC
Q 010610 281 DIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG 348 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~------saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRG 348 (506)
|.+.|+++|+++|.+|.-- .+.-|..+.+.++.-+.++.|+.- .||.+=-+|+++ +-||+|||-
T Consensus 236 DA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lD----GGVR~G~DVlKALALGAk~VfiGRP 309 (363)
T KOG0538|consen 236 DARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLD----GGVRRGTDVLKALALGAKGVFIGRP 309 (363)
T ss_pred HHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEe----cCcccchHHHHHHhcccceEEecCc
Confidence 4467888999999998642 234455555555555555555542 355555555554 678888874
No 454
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.95 E-value=69 Score=33.25 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=46.7
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hhHHHHHHh-CCEEEEcC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDGImIaR 347 (506)
..+++..+++.|+|.|.+=.. ++++++++.++++. ... ||---|+ +|+.++++. +|.|-+|.
T Consensus 203 tleea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~~---~~~----leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 203 TLDQLEEALELGVDAVLLDNM-TPDTLREAVAIVAG---RAI----TEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhCC---Cce----EEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 567788889999999999875 57888888777642 222 5666555 688888887 89998873
No 455
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=39.90 E-value=3.5e+02 Score=27.71 Aligned_cols=47 Identities=38% Similarity=0.441 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHH-cCCcEEEEehhhhhhhcCCCCChhhcccHHH-HHHhCcceeEeec
Q 010610 360 PLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (506)
Q Consensus 360 ~~~Qk~II~~c~~-~GkPvivATqmLeSMi~~~~PtRAEv~Dvan-av~dG~D~vmLs~ 416 (506)
+..-.+|++..++ .++|+.+= -.|.-.++.+++. +...|+|++.+++
T Consensus 153 ~~~~~~iv~~v~~~~~~Pv~vK----------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 153 PELVEEICRWVREAVKIPVIAK----------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred HHHHHHHHHHHHHhcCCCeEEE----------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 5556777777765 46898874 2454445556666 5567999998753
No 456
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=39.87 E-value=3.5e+02 Score=26.97 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=69.7
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH-hCCEEE-Ec-CCCcccCCCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT-ASDGAM-VA-RGDLGAELPI 356 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~-~sDGIm-Ia-RGDLgvelg~ 356 (506)
+.++.+.+.|+|++.++-.. .++...+.+.+++.|-+..++..=.| -.+.+..|++ ..|-|. ++ .|=.|..-++
T Consensus 95 ~fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYGLDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCC
Confidence 45677789999999996543 47888888889888876665555444 3566888888 345333 34 2333443332
Q ss_pred CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEee
Q 010610 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 357 e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs 415 (506)
. +...+.+-+..+...+|+.+-.. .=+.+ ++...... +|++...
T Consensus 172 ~--~~~~~~i~~lr~~~~~pI~vggG---------I~~~e---~~~~~~~~-ADgvVvG 215 (242)
T cd04724 172 P--DDLKELIKRIRKYTDLPIAVGFG---------ISTPE---QAAEVAKY-ADGVIVG 215 (242)
T ss_pred C--hhHHHHHHHHHhcCCCcEEEEcc---------CCCHH---HHHHHHcc-CCEEEEC
Confidence 1 22333333333334789887642 22222 34455555 8887763
No 457
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=39.83 E-value=66 Score=29.93 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=13.9
Q ss_pred CCeEecCCCEEEEEEec
Q 010610 186 QPITLTSGQEFTFTIQR 202 (506)
Q Consensus 186 ~~i~Lk~G~~v~lt~~~ 202 (506)
..+.+++||+|+++..+
T Consensus 61 ~~I~VkaGD~Vtl~vtN 77 (135)
T TIGR03096 61 EALVVKKGTPVKVTVEN 77 (135)
T ss_pred CEEEECCCCEEEEEEEe
Confidence 46899999999987653
No 458
>PF09347 DUF1989: Domain of unknown function (DUF1989); InterPro: IPR018959 This entry represents proteins that are functionally uncharacterised. ; PDB: 3ORU_A 3SIY_C 3DI4_A.
Probab=39.83 E-value=58 Score=31.10 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=32.4
Q ss_pred CeEecCCCEEEEEEecCCCCceEEEeccchhh--------------hhcCCCCEEEEeCCeEEEEEEEEe
Q 010610 187 PITLTSGQEFTFTIQRGVGSAECVSVNYDDFV--------------NDVEVGDMLLVDGGMMSLLVKSKT 242 (506)
Q Consensus 187 ~i~Lk~G~~v~lt~~~~~~~~~~i~v~~~~l~--------------~~v~~Gd~IliDDG~i~l~V~~~~ 242 (506)
...|++||.++|+.-++...-+.+..+.++.. -.+++||.++=|.|+..+++++-+
T Consensus 11 a~~v~rG~~lri~d~~G~q~~d~~~~~a~d~~Er~s~~~T~~~~~~~~l~~G~~L~S~~~rpm~tIv~Dt 80 (166)
T PF09347_consen 11 AFRVKRGQVLRITDPEGNQVVDLLAYNADDPSERLSMGDTRKAQHTIYLTTGDVLYSNMGRPMLTIVEDT 80 (166)
T ss_dssp EEEE-TT-EEEEEESSSS--EEEEEEETTEEEEEB-HHHHHHHHCBSC--TT-EEEBTTTSEEEEEEEET
T ss_pred EEEECCCCEEEEEeCCCCceeEEEEEecCCCcEEeCHHHHHHhhcccccCCCCEEEcCCCCeEEEEEccC
Confidence 46799999999986543322222333322211 146899999999999999998754
No 459
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=39.81 E-value=4.1e+02 Score=26.75 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=80.5
Q ss_pred HHHhHhhHhcC-CcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEec---CChhhhhhHHHHHHh-----CCEEEEcCCC
Q 010610 279 WDDIKFGVDNK-VDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKI---ESADSIPNLHSIITA-----SDGAMVARGD 349 (506)
Q Consensus 279 ~~dI~~al~~g-vD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKI---Et~~aveNldeIl~~-----sDGImIaRGD 349 (506)
.+.++.+++.| +|||=+-.-...+.+.++.+..++. ++++|+-- +.....+++.+++.. +|.+=|+
T Consensus 98 ~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~--~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia--- 172 (253)
T PRK02412 98 LALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEH--GVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIA--- 172 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHc--CCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEE---
Confidence 34457788888 8999988655556666666665443 34566543 333344455555554 4655544
Q ss_pred cccCCC--CCcHHHHHHHHHHHHHH--cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCccee--EeeccccCCCC
Q 010610 350 LGAELP--IEEVPLLQEEIIRTCRS--MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV--MLSGETAHGKF 423 (506)
Q Consensus 350 Lgvelg--~e~V~~~Qk~II~~c~~--~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~v--mLs~ETA~G~y 423 (506)
-++ ..++....+- ...++. .++|+|.. +|=.....|| +.+.+. |.-.. .+..++|-|.+
T Consensus 173 ---~~a~~~~D~~~ll~~-~~~~~~~~~~~P~i~~-----~MG~~G~~SR-----il~~~~-GS~~ty~~~~~~sAPGQ~ 237 (253)
T PRK02412 173 ---VMPQSEQDVLTLLNA-TREMKELYADQPLITM-----SMGKLGRISR-----LAGEVF-GSSWTFASLDKASAPGQI 237 (253)
T ss_pred ---ecCCCHHHHHHHHHH-HHHHHhcCCCCCEEEE-----eCCCCchHHH-----cchhhh-CCcceecCCCCCCCCCCC
Confidence 122 2344444432 233333 57898754 4666677788 666655 22222 26678999999
Q ss_pred HHHHHHHHHHHH
Q 010610 424 PLKAVKVMHTVS 435 (506)
Q Consensus 424 PveaV~~m~~I~ 435 (506)
+++-++.+-++.
T Consensus 238 ~~~el~~i~~~l 249 (253)
T PRK02412 238 SVEDLRRILEIL 249 (253)
T ss_pred CHHHHHHHHHHh
Confidence 988776655443
No 460
>PLN02979 glycolate oxidase
Probab=39.75 E-value=1.1e+02 Score=32.93 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=58.9
Q ss_pred CHHHhHhhHhcCCcEEEEccCCCHH------HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcC
Q 010610 278 DWDDIKFGVDNKVDFYAVSFVKDAQ------VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (506)
Q Consensus 278 D~~dI~~al~~gvD~IalSfV~sae------dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaR 347 (506)
+.+|.+.+.+.|+|+|.+|-..-.. -+..+.+.....+.++.||+- .||.+=-+|+++ +|++++||
T Consensus 233 ~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~d----GGIr~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 233 TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD----GGVRRGTDVFKALALGASGIFIGR 308 (366)
T ss_pred CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEe----CCcCcHHHHHHHHHcCCCEEEEcH
Confidence 4677889999999999998754221 133333333333456677762 355555555554 89999999
Q ss_pred CCc-ccCC-CCC----cHHHHHHHHHHHHHHcCCc
Q 010610 348 GDL-GAEL-PIE----EVPLLQEEIIRTCRSMGKA 376 (506)
Q Consensus 348 GDL-gvel-g~e----~V~~~Qk~II~~c~~~GkP 376 (506)
-=| +... |.+ .+...++++.......|..
T Consensus 309 p~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~ 343 (366)
T PLN02979 309 PVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCR 343 (366)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 877 4443 333 3455556666666666643
No 461
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=39.64 E-value=62 Score=35.73 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=44.5
Q ss_pred cCHHHhHhhHhcCCcEEEEcc------CCCHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHhCCEEEEcCC
Q 010610 277 KDWDDIKFGVDNKVDFYAVSF------VKDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITASDGAMVARG 348 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSf------V~saedV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~sDGImIaRG 348 (506)
++.++++.+++.|++.|.+.. --+.+.-.++..++ -.++.+|+ -|.|++-+..+. ..+||++||-.
T Consensus 167 h~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~i---p~~~~~vseSGI~t~~d~~~~~---~~~davLiG~~ 240 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLI---PADVIVISESGIYTHAQVRELS---PFANGFLIGSS 240 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC---CCCcEEEEeCCCCCHHHHHHHH---hcCCEEEECHH
Confidence 568889999999999999864 23333444444444 23455555 455555554443 23899999865
Q ss_pred CcccC
Q 010610 349 DLGAE 353 (506)
Q Consensus 349 DLgve 353 (506)
-+..+
T Consensus 241 lm~~~ 245 (454)
T PRK09427 241 LMAED 245 (454)
T ss_pred HcCCC
Confidence 55443
No 462
>PLN02535 glycolate oxidase
Probab=39.52 E-value=2.1e+02 Score=30.88 Aligned_cols=96 Identities=14% Similarity=0.202 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHH--cCC
Q 010610 300 DAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRS--MGK 375 (506)
Q Consensus 300 saedV~~lr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~--~Gk 375 (506)
+-++++.+++.. +.+||+| |-+++-. ....+. +|+|.+.-. -|-.++.. +.....+.+...+ ...
T Consensus 211 tW~~i~~lr~~~-----~~PvivKgV~~~~dA---~~a~~~GvD~I~vsn~-GGr~~d~~--~~t~~~L~ev~~av~~~i 279 (364)
T PLN02535 211 SWKDIEWLRSIT-----NLPILIKGVLTREDA---IKAVEVGVAGIIVSNH-GARQLDYS--PATISVLEEVVQAVGGRV 279 (364)
T ss_pred CHHHHHHHHhcc-----CCCEEEecCCCHHHH---HHHHhcCCCEEEEeCC-CcCCCCCC--hHHHHHHHHHHHHHhcCC
Confidence 556776666643 3567776 5444332 222233 788887511 02222221 1112222222222 258
Q ss_pred cEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccc
Q 010610 376 AVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 418 (506)
Q Consensus 376 PvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ET 418 (506)
|+|....+- --.|++.++..|+|++++..--
T Consensus 280 pVi~dGGIr------------~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 280 PVLLDGGVR------------RGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred CEEeeCCCC------------CHHHHHHHHHcCCCEEEECHHH
Confidence 888765322 2468999999999999985443
No 463
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=39.50 E-value=3.8e+02 Score=28.25 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCccCHHHh--------HhhHhcCCcEEEEccCC-------------------------CHHHHHHHHHHHHhc-CCCc
Q 010610 273 SITEKDWDDI--------KFGVDNKVDFYAVSFVK-------------------------DAQVVHELKNYLKSC-GADI 318 (506)
Q Consensus 273 ~ltekD~~dI--------~~al~~gvD~IalSfV~-------------------------saedV~~lr~~l~~~-~~~i 318 (506)
.+|..|++.+ +.+.+.|+|+|-+.+-. +..-+.++-+.+++. +.+
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d- 219 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD- 219 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-
Q ss_pred eEEEec-------------CChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh
Q 010610 319 HVIVKI-------------ESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML 384 (506)
Q Consensus 319 ~IIaKI-------------Et~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL 384 (506)
.|..|| .-.+.++-+..+.+. .|.|=|..|...-.. -.......-...+..++||+..
T Consensus 220 ~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~---- 291 (338)
T cd02933 220 RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAA---- 291 (338)
T ss_pred ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEE----
Q ss_pred hhhhcCCCCChhhcccHHHHHHhC-cceeEee
Q 010610 385 ESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (506)
Q Consensus 385 eSMi~~~~PtRAEv~Dvanav~dG-~D~vmLs 415 (506)
-+-...+...++.+| +|.|++.
T Consensus 292 ---------G~i~~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 292 ---------GGYDAESAEAALADGKADLVAFG 314 (338)
T ss_pred ---------CCCCHHHHHHHHHcCCCCEEEeC
No 464
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=39.42 E-value=1.4e+02 Score=30.05 Aligned_cols=84 Identities=11% Similarity=0.263 Sum_probs=51.8
Q ss_pred hhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHH
Q 010610 284 FGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQ 363 (506)
Q Consensus 284 ~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Q 363 (506)
.++..|+++|-+--.++. ...+...+.++ +..+++ +..+.+++++..+|.+.|+.| |+-. .. .
T Consensus 46 ~~~~~g~~~v~~~~~~~~------~~~i~~~~pe~-~~~~~~--~~~~~~~~~~~~~davvig~G-l~~~----~~---~ 108 (272)
T TIGR00196 46 AALRAGAGLVTVAAPENV------ITLINSVSPEL-IVHRLG--WKVDEDEELLERYDVVVIGPG-LGQD----PS---F 108 (272)
T ss_pred HHHHhCCCeEEEEEchhh------HHHHhhcCCEE-EEecch--hhHHHHHhhhccCCEEEEcCC-CCCC----HH---H
Confidence 445568888776544422 12233333332 223443 466777888778899999876 4332 22 5
Q ss_pred HHHHHHHHHcCCcEEEEehhh
Q 010610 364 EEIIRTCRSMGKAVIVATNML 384 (506)
Q Consensus 364 k~II~~c~~~GkPvivATqmL 384 (506)
.++++.+++.++|+++-+.-+
T Consensus 109 ~~l~~~~~~~~~pvVlDa~g~ 129 (272)
T TIGR00196 109 KKAVEEVLELDKPVVLDADAL 129 (272)
T ss_pred HHHHHHHHhcCCCEEEEhHHH
Confidence 678888888999998766433
No 465
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=39.41 E-value=2.2e+02 Score=28.30 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=62.5
Q ss_pred HHHhHhhHhcCCcEEEEccCC---------CHHHHHHHHHHHHhc-CCCceEEEe----c------CChhhhhhHHHHHH
Q 010610 279 WDDIKFGVDNKVDFYAVSFVK---------DAQVVHELKNYLKSC-GADIHVIVK----I------ESADSIPNLHSIIT 338 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~---------saedV~~lr~~l~~~-~~~i~IIaK----I------Et~~aveNldeIl~ 338 (506)
.+.++++.+.|.|+|-+.+-. +.+++.++++.+.+. +..+.+.+- . +...+++.+...++
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 92 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIE 92 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHH
Confidence 355788899999999664311 458999999999887 444443322 1 23346666666666
Q ss_pred h-----CCEEEEcCCCcccCCC----CCcHHHHHHHHHHHHHHcCCcEEE
Q 010610 339 A-----SDGAMVARGDLGAELP----IEEVPLLQEEIIRTCRSMGKAVIV 379 (506)
Q Consensus 339 ~-----sDGImIaRGDLgvelg----~e~V~~~Qk~II~~c~~~GkPviv 379 (506)
. ++.+.+-.|-... .+ ++.+....+++...+++.|..+.+
T Consensus 93 ~A~~lG~~~v~~~~g~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 93 RCEELGIRLLVFHPGSYLG-QSKEEGLKRVIEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHcCCCEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 5 5677775553221 11 124455566777777778877665
No 466
>PRK10425 DNase TatD; Provisional
Probab=39.32 E-value=3.9e+02 Score=27.00 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=58.8
Q ss_pred CHH-HhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCce----EEEe-c-C-ChhhhhhHHHHHHhCCEEEEcCCC
Q 010610 278 DWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIH----VIVK-I-E-SADSIPNLHSIITASDGAMVARGD 349 (506)
Q Consensus 278 D~~-dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~----IIaK-I-E-t~~aveNldeIl~~sDGImIaRGD 349 (506)
|.+ -++.+.+.|+..++..-+ +.++...+.++.+... .+. |-.. + | +.+.++.+++++..-. ++|=|.
T Consensus 16 d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~-~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~--~vaIGE 91 (258)
T PRK10425 16 DRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYP-SCWSTAGVHPHDSSQWQAATEEAIIELAAQPE--VVAIGE 91 (258)
T ss_pred cHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCC-CEEEEEEeCcCccccCCHHHHHHHHHhccCCC--EEEEee
Confidence 443 456777889887766655 4777877777765432 221 2110 1 2 2334555555554323 344466
Q ss_pred cccCCCCC-cHHHHHH----HHHHHHHHcCCcEEEEe
Q 010610 350 LGAELPIE-EVPLLQE----EIIRTCRSMGKAVIVAT 381 (506)
Q Consensus 350 Lgvelg~e-~V~~~Qk----~II~~c~~~GkPvivAT 381 (506)
.|.+.... .-...|+ +.++.|.++++|+++.+
T Consensus 92 iGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 92 CGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred eeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 66666532 2345564 55678999999999886
No 467
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=38.97 E-value=1.4e+02 Score=31.61 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
-+..+++.|.+.|..+.|-+--+... -+|..++++-.|.|+-+-.+ +..+..+-+.|+++++|++.+
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 45556778888888887766444433 25788888889988876433 244556778999999998875
No 468
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=38.94 E-value=96 Score=30.76 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=42.2
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHH--------HHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEE
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQV--------VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMV 345 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saed--------V~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImI 345 (506)
.+....|.+.|+||| .|||.+.+| +++++++++..+.+++|++ .++.|.+++++. +|.+=+
T Consensus 112 ~~Qa~~Aa~aGa~yi-spyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~~~~~G~d~vTi 184 (213)
T TIGR00875 112 AAQALLAAKAGATYV-SPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLEAALIGADIATM 184 (213)
T ss_pred HHHHHHHHHcCCCEE-EeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHHHHHcCCCEEEc
Confidence 344456777899977 789988877 6667777777777777766 467777777753 455543
No 469
>PRK14852 hypothetical protein; Provisional
Probab=38.84 E-value=1.1e+02 Score=37.07 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEeh
Q 010610 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 303 dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATq 382 (506)
.+..+++.+.+.|..+.|.+--|.. .-+|++++++-+|.|+=+-.++ -..+...+...|.+.|+|+|.++-
T Consensus 387 Kaevaa~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~--------~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 387 KLDVMTERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFF--------ALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCc--------cHHHHHHHHHHHHHcCCCEEEeec
Confidence 4455667777778877766644433 3379999999899888542222 123667888999999999998763
No 470
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=38.74 E-value=63 Score=32.62 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=53.1
Q ss_pred ccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhC
Q 010610 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITAS 340 (506)
Q Consensus 276 ekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~s 340 (506)
+.|.+.++.=++.|+||+.--++=+++.+.+..+.+++.|-.++|++-|=-.....++.-+...+
T Consensus 147 ~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~ 211 (274)
T cd00537 147 EEDIKRLKRKVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLC 211 (274)
T ss_pred HHHHHHHHHHHHCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhh
Confidence 45677788888999999999999999999999999988887888888776666666666665544
No 471
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.72 E-value=2.8e+02 Score=29.81 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=48.7
Q ss_pred ceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChh
Q 010610 318 IHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRA 396 (506)
Q Consensus 318 i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRA 396 (506)
+.+..++......+..+.++++ +|.|.+.-..-........= -...+.+.+++.++|||. .+ ..|..
T Consensus 132 V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~--~~~~i~~~ik~~~ipVIa-G~---------V~t~e 199 (368)
T PRK08649 132 VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG--EPLNLKEFIYELDVPVIV-GG---------CVTYT 199 (368)
T ss_pred EEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcC--CHHHHHHHHHHCCCCEEE-eC---------CCCHH
Confidence 4455566555677777888776 89998842111111111110 113356666678999875 22 33433
Q ss_pred hcccHHHHHHhCcceeEee
Q 010610 397 EVSDIAIAVREGADAVMLS 415 (506)
Q Consensus 397 Ev~Dvanav~dG~D~vmLs 415 (506)
+...++..|+|+||..
T Consensus 200 ---~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 200 ---TALHLMRTGAAGVLVG 215 (368)
T ss_pred ---HHHHHHHcCCCEEEEC
Confidence 4556777899999986
No 472
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=38.72 E-value=4.7e+02 Score=27.15 Aligned_cols=155 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcC------------------------------CCceEEEecCChh
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG------------------------------ADIHVIVKIESAD 328 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~------------------------------~~i~IIaKIEt~~ 328 (506)
++.|+.|.+.+.- |..-.|.+.+.++.+-+.-++.+ ..++|...+....
T Consensus 7 k~iL~~A~~~~ya-V~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 7 AELLKKAEKGGYA-VGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred HHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred hhhhHHHHHHh-CCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhh-----hhhhcCCCCChhhcccHH
Q 010610 329 SIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML-----ESMIVHPTPTRAEVSDIA 402 (506)
Q Consensus 329 aveNldeIl~~-sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmL-----eSMi~~~~PtRAEv~Dva 402 (506)
.++.+..-++. .+-||+. |-++|+++=...-+++++.|+..|..|=.==..+ .+......-......+..
T Consensus 86 ~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~ 161 (284)
T PRK12857 86 DFEQVMKCIRNGFTSVMID----GSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEAR 161 (284)
T ss_pred CHHHHHHHHHcCCCeEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHH
Q ss_pred HHHHh-CcceeEeeccccCCCC---HHHHHHHHHHHHHHH
Q 010610 403 IAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (506)
Q Consensus 403 nav~d-G~D~vmLs~ETA~G~y---PveaV~~m~~I~~~a 438 (506)
.|+.. |+|++-.|-=|+.|.| |---...+.+|....
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~ 201 (284)
T PRK12857 162 RFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV 201 (284)
T ss_pred HHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 473
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.59 E-value=51 Score=36.86 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=40.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEeCCCCChHHHHHHHHHHHH
Q 010610 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (506)
Q Consensus 108 r~tKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 158 (506)
.+-.+.+.+|+. +..+..+.|+++|+|+.=+.-+||..+...+.|+.+|+
T Consensus 230 grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 230 KRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred cCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 455567788875 56799999999999999999999987766677776665
No 474
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=38.55 E-value=45 Score=34.59 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHhHhhHhcCCcEEEEcc------CCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhhHHHHHHh--CCEEEEcCC
Q 010610 279 WDDIKFGVDNKVDFYAVSF------VKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA--SDGAMVARG 348 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSf------V~saedV~~lr~~l~~~~~~i~IIaK--IEt~~aveNldeIl~~--sDGImIaRG 348 (506)
.+-++...+.|+++|.+-- -+...|-..++.+.+.. .++||+- |.|.+ .+.++++. +||||||||
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~---d~~~~~~~tg~dgvMigRg 215 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPE---DAERMLEQTGADGVMIGRG 215 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHH---HHHHHCCCH-SSEEEESHH
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHH---HHHHHHHhcCCcEEEEchh
Confidence 4455667789999997742 12245555555544433 3888885 55543 33344444 899999998
Q ss_pred Ccc
Q 010610 349 DLG 351 (506)
Q Consensus 349 DLg 351 (506)
=|+
T Consensus 216 al~ 218 (309)
T PF01207_consen 216 ALG 218 (309)
T ss_dssp HCC
T ss_pred hhh
Confidence 664
No 475
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=38.37 E-value=45 Score=33.20 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=46.4
Q ss_pred HhHhhHhcCCcEEEEccCCC-----HHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHH-------hCCEEEEcCC
Q 010610 281 DIKFGVDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT-------ASDGAMVARG 348 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~s-----aedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~-------~sDGImIaRG 348 (506)
.++...+.|++.+.+--+.. .-|...+++..+. .++++|+ --++.+++++.+ -+||+|+||+
T Consensus 151 ~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~--~~ipvia----sGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 151 VLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR--TDAPVVA----SGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh--CCCCEEE----eCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 34556688999888776543 2245555554433 3567777 334555555543 2799999998
Q ss_pred CcccCCCCCcH
Q 010610 349 DLGAELPIEEV 359 (506)
Q Consensus 349 DLgvelg~e~V 359 (506)
=+.-.+++++.
T Consensus 225 ~~~g~~~~~~~ 235 (241)
T PRK14024 225 LYAGAFTLPEA 235 (241)
T ss_pred HHcCCCCHHHH
Confidence 77777776654
No 476
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=38.09 E-value=88 Score=33.59 Aligned_cols=90 Identities=26% Similarity=0.264 Sum_probs=54.0
Q ss_pred HHhHhhHhcCCcEEEE-----------ccCCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhhHHHHHHh--CCEEE
Q 010610 280 DDIKFGVDNKVDFYAV-----------SFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA--SDGAM 344 (506)
Q Consensus 280 ~dI~~al~~gvD~Ial-----------SfV~saedV~~lr~~l~~~~~~i~IIaK--IEt~~aveNldeIl~~--sDGIm 344 (506)
+-.+...+.|++++.+ ++.-+-+.++.+++.+ .++++||. |.+.+-+ +.+++. +||||
T Consensus 159 d~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~----~~ipviaNGnI~~~~d~---~~~~~~tG~dGVM 231 (358)
T KOG2335|consen 159 DYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV----PDIPVIANGNILSLEDV---ERCLKYTGADGVM 231 (358)
T ss_pred HHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhC----cCCcEEeeCCcCcHHHH---HHHHHHhCCceEE
Confidence 3344566789998876 2222333444444443 23888884 6665444 445553 89999
Q ss_pred EcCCCcccCCCC------CcHHHHHHHHHHHHHHcCCc
Q 010610 345 VARGDLGAELPI------EEVPLLQEEIIRTCRSMGKA 376 (506)
Q Consensus 345 IaRGDLgvelg~------e~V~~~Qk~II~~c~~~GkP 376 (506)
+|||=|-.-.=+ ......-.+-+..|.+.+-+
T Consensus 232 ~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~ 269 (358)
T KOG2335|consen 232 SARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGGL 269 (358)
T ss_pred ecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 999987543322 13445556667777777744
No 477
>PRK00865 glutamate racemase; Provisional
Probab=38.04 E-value=2.1e+02 Score=28.82 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=63.5
Q ss_pred hHhhHhcCCcEEEEccCCCHH--HHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCC--EEEEcCCCcccCCCCC
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQ--VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASD--GAMVARGDLGAELPIE 357 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~sae--dV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sD--GImIaRGDLgvelg~e 357 (506)
+++..+.|+|+|+++ +.++. -+.++|+.+ +++||- ||. ++...-.. .... ||+=.+ +--
T Consensus 60 ~~~L~~~g~d~iVIa-CNTa~~~~l~~lr~~~-----~iPvig-i~~--a~~~a~~~-~~~~~igVLaT~-------~Ti 122 (261)
T PRK00865 60 VEFLLEYGVKMLVIA-CNTASAVALPDLRERY-----DIPVVG-IVP--AIKPAAAL-TRNGRIGVLATP-------GTV 122 (261)
T ss_pred HHHHHhCCCCEEEEe-CchHHHHHHHHHHHhC-----CCCEEe-eHH--HHHHHHHh-cCCCeEEEEECH-------HHh
Confidence 356678999999888 45554 456777643 588999 873 44332211 0122 333211 101
Q ss_pred cHHHHHHHHHHHHHHcCCcE-EEEehhhhhhhcCCCCC----hhhcccHHHH-HHhCcceeEeeccccCCCCHH
Q 010610 358 EVPLLQEEIIRTCRSMGKAV-IVATNMLESMIVHPTPT----RAEVSDIAIA-VREGADAVMLSGETAHGKFPL 425 (506)
Q Consensus 358 ~V~~~Qk~II~~c~~~GkPv-ivATqmLeSMi~~~~Pt----RAEv~Dvana-v~dG~D~vmLs~ETA~G~yPv 425 (506)
+-...|+.+-+.. .+.-| .+.+.-+-.++++.... +..+....+. ..+|+|+++|. -..||.
T Consensus 123 ~s~~y~~~i~~~~--~~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILG----CTh~p~ 190 (261)
T PRK00865 123 KSAAYRDLIARFA--PDCQVESLACPELVPLVEAGILGGPVTLEVLREYLAPLLAAGIDTLVLG----CTHYPL 190 (261)
T ss_pred hchHHHHHHHHhC--CCCEEEEecCHHHHHHHhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEEC----CcCHHH
Confidence 2233443332221 12333 25555555566654432 2223333333 46799999995 889995
No 478
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=37.95 E-value=4.2e+02 Score=28.57 Aligned_cols=123 Identities=9% Similarity=0.122 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.++.+. .|..+.-..+.+.-..|++.+..- + ..-++++.+.+++++....+..
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~-----~-~~~~~~~~a~~~~~~~g~~~v~ 192 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITD-----G-NYDDSVRLAAQEAQENGWVVVQ 192 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeC-----C-CHHHHHHHHHHHHHHcCCEEec
Confidence 3456899999999987 343333345667788999966553 2 3457777777765542211111
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC-----c-eEEEEcCChHHHHHHHhh-----CC-CCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-----T-SIVVFTRTGFMAILLSHY-----RP-SGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-----a-~Iiv~T~sG~tA~~lS~~-----RP-~~pIia~T~ 505 (506)
...+..+.. .+....+-...-+.++.++++ . .||+.+-+|.++--++++ ++ ...|+++-|
T Consensus 193 ~~~~~~~~~-~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep 264 (399)
T PRK08206 193 DTAWEGYEE-IPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEP 264 (399)
T ss_pred CccccCccc-ccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECC
Confidence 100000000 011122223334556666653 4 788888888777655433 34 455888754
No 479
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=37.93 E-value=76 Score=33.13 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=38.7
Q ss_pred HhHhhHhcCCcEEEEccCCCH-----------HHHHHHHHHHHhcCCCceEEE--ecCChhhhhhHHHHHHh--CCEEEE
Q 010610 281 DIKFGVDNKVDFYAVSFVKDA-----------QVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA--SDGAMV 345 (506)
Q Consensus 281 dI~~al~~gvD~IalSfV~sa-----------edV~~lr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~--sDGImI 345 (506)
.++...+.|+|+|.+.- ++. +.+.++++. .+++||+ -|.|++ ...++++. +|||||
T Consensus 153 ~a~~l~~~Gvd~i~Vh~-Rt~~~~y~g~~~~~~~i~~ik~~-----~~iPVi~nGdI~t~~---da~~~l~~~g~DgVmi 223 (312)
T PRK10550 153 IADAVQQAGATELVVHG-RTKEDGYRAEHINWQAIGEIRQR-----LTIPVIANGEIWDWQ---SAQQCMAITGCDAVMI 223 (312)
T ss_pred HHHHHHhcCCCEEEECC-CCCccCCCCCcccHHHHHHHHhh-----cCCcEEEeCCcCCHH---HHHHHHhccCCCEEEE
Confidence 33455678999999852 222 223444432 2577777 466664 34555543 899999
Q ss_pred cCCCccc
Q 010610 346 ARGDLGA 352 (506)
Q Consensus 346 aRGDLgv 352 (506)
|||=|+-
T Consensus 224 GRg~l~n 230 (312)
T PRK10550 224 GRGALNI 230 (312)
T ss_pred cHHhHhC
Confidence 9996643
No 480
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=37.92 E-value=70 Score=25.16 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.6
Q ss_pred CCCCEEEEeCCeEEEEEEEEeCCeEEEEEe
Q 010610 222 EVGDMLLVDGGMMSLLVKSKTEDSVKCEVV 251 (506)
Q Consensus 222 ~~Gd~IliDDG~i~l~V~~~~~~~v~~~V~ 251 (506)
++|..|.|+| .|..+|.+++++.++.-+.
T Consensus 7 k~gE~I~Ig~-~I~I~Vl~i~~~~VklgI~ 35 (54)
T PF02599_consen 7 KVGESIVIGD-DIEITVLEISGGQVKLGID 35 (54)
T ss_dssp ETT-EEEETT-TEEEEEEEEETTEEEEEEE
T ss_pred cCCCEEEECC-CEEEEEEEEcCCEEEEEEE
Confidence 7899999987 8999999999988876544
No 481
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.84 E-value=4e+02 Score=26.11 Aligned_cols=133 Identities=8% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----CCEEEEcCCCcccCCC
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELP 355 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDGImIaRGDLgvelg 355 (506)
.+.+.+.+.++|+|-++ ++--.+.++++.+ +....|=+ +..|++++.++ +|.+++|+--=...=+
T Consensus 70 d~~~lA~~~~adGVHlg--~~d~~~~~~r~~~---~~~~~iG~------S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~ 138 (211)
T PRK03512 70 DYWRLAIKHQAYGVHLG--QEDLETADLNAIR---AAGLRLGV------STHDDMEIDVALAARPSYIALGHVFPTQTKQ 138 (211)
T ss_pred CHHHHHHHcCCCEEEcC--hHhCCHHHHHHhc---CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCccCCCCCC
Q ss_pred CCcHHHHHHHHHHHHHH-cCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHH
Q 010610 356 IEEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 434 (506)
Q Consensus 356 ~e~V~~~Qk~II~~c~~-~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I 434 (506)
-..-+.-...+.+.++. ..+||+.-..+-.. ++......|++++-+.+.--.-+-|.++++.+.++
T Consensus 139 ~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~-------------ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~ 205 (211)
T PRK03512 139 MPSAPQGLAQLARHVERLADYPTVAIGGISLE-------------RAPAVLATGVGSIAVVSAITQAADWRAATAQLLEL 205 (211)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCEEEECCCCHH-------------HHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHH
Q ss_pred HH
Q 010610 435 SL 436 (506)
Q Consensus 435 ~~ 436 (506)
..
T Consensus 206 ~~ 207 (211)
T PRK03512 206 AE 207 (211)
T ss_pred Hh
No 482
>PLN02334 ribulose-phosphate 3-epimerase
Probab=37.80 E-value=4e+02 Score=26.10 Aligned_cols=130 Identities=20% Similarity=0.234 Sum_probs=76.0
Q ss_pred HHhHhhHhcCCcEEEEc-----cCCCH----HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCC
Q 010610 280 DDIKFGVDNKVDFYAVS-----FVKDA----QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD 349 (506)
Q Consensus 280 ~dI~~al~~gvD~IalS-----fV~sa----edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGD 349 (506)
+.|+.+.+.|+++|-+- |+.+. +.+++++++. +..+.+-.+|.++.- .++..++. +|||.+=
T Consensus 24 ~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~---~~~~~vhlmv~~p~d--~~~~~~~~gad~v~vH--- 95 (229)
T PLN02334 24 EEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHT---DAPLDCHLMVTNPED--YVPDFAKAGASIFTFH--- 95 (229)
T ss_pred HHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcC---CCcEEEEeccCCHHH--HHHHHHHcCCCEEEEe---
Confidence 46778888999999873 33221 3455555442 222345556665443 45565555 7999442
Q ss_pred cccCCC--CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCC-ChhhcccHHHHHHhC--cceeEe-ecc--ccCC
Q 010610 350 LGAELP--IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTP-TRAEVSDIAIAVREG--ADAVML-SGE--TAHG 421 (506)
Q Consensus 350 Lgvelg--~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~P-tRAEv~Dvanav~dG--~D~vmL-s~E--TA~G 421 (506)
++ ..+ .-.+.++.++..|+-++++++ | |..| ....+..+ +|.+++ +-+ +...
T Consensus 96 ----~~q~~~d---~~~~~~~~i~~~g~~iGls~~----------~~t~~~---~~~~~~~~~~~Dyi~~~~v~pg~~~~ 155 (229)
T PLN02334 96 ----IEQASTI---HLHRLIQQIKSAGMKAGVVLN----------PGTPVE---AVEPVVEKGLVDMVLVMSVEPGFGGQ 155 (229)
T ss_pred ----eccccch---hHHHHHHHHHHCCCeEEEEEC----------CCCCHH---HHHHHHhccCCCEEEEEEEecCCCcc
Confidence 22 111 225788888999999998862 3 3222 33445455 998754 333 2334
Q ss_pred CCHHHHHHHHHHHHHH
Q 010610 422 KFPLKAVKVMHTVSLR 437 (506)
Q Consensus 422 ~yPveaV~~m~~I~~~ 437 (506)
+++...+..++++.+.
T Consensus 156 ~~~~~~~~~i~~~~~~ 171 (229)
T PLN02334 156 SFIPSMMDKVRALRKK 171 (229)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 5877788777776544
No 483
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=37.62 E-value=1.4e+02 Score=29.84 Aligned_cols=43 Identities=30% Similarity=0.288 Sum_probs=20.7
Q ss_pred CeEecCCCEEEEEEecC----CCCceEEEeccchhhhhcCCCCEEEE
Q 010610 187 PITLTSGQEFTFTIQRG----VGSAECVSVNYDDFVNDVEVGDMLLV 229 (506)
Q Consensus 187 ~i~Lk~G~~v~lt~~~~----~~~~~~i~v~~~~l~~~v~~Gd~Ili 229 (506)
.++.+.|++++||...- .+....-.-...-+.++|++||.|+.
T Consensus 68 ~i~te~g~~l~LTp~HLI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 68 VIETEDGRSLTLTPNHLIFVADCNGSESSNFRAVFASDVRVGDCVLV 114 (217)
T ss_dssp EEEETTS-EEEE-TT-EEEEEETTTTEE---EEEEGGG--TT-EEEE
T ss_pred EEEcCCCCeEEecCCcEEEEecCCCCcccccceeehhhCCCCCEEEE
Confidence 46677788888875520 01111110013457899999999999
No 484
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=37.41 E-value=2e+02 Score=29.30 Aligned_cols=96 Identities=17% Similarity=0.053 Sum_probs=56.3
Q ss_pred HHHHHH-h-CCEEEEcCCCc--ccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhc-ccHHHHHHh
Q 010610 333 LHSIIT-A-SDGAMVARGDL--GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEV-SDIAIAVRE 407 (506)
Q Consensus 333 ldeIl~-~-sDGImIaRGDL--gvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv-~Dvanav~d 407 (506)
++..++ . +|||+++ |-- +..|..++-..+.+..++.++ -.+||+..+ ..++-.|. .-.-.+...
T Consensus 30 i~~l~~~~Gv~gi~v~-GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------g~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 30 VRFNIEKQGIDGLYVG-GSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------GSVNTAEAQELAKYATEL 98 (293)
T ss_pred HHHHHhcCCCCEEEEC-CCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecC---------CCCCHHHHHHHHHHHHHc
Confidence 344444 3 7999986 211 123334454445555555553 236777654 22333443 334557889
Q ss_pred CcceeEeeccccCCCCHHHHHHHHHHHHHHHh
Q 010610 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (506)
Q Consensus 408 G~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE 439 (506)
|+|++|+..=--...-+-+.++....|+..+.
T Consensus 99 Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~ 130 (293)
T PRK04147 99 GYDAISAVTPFYYPFSFEEICDYYREIIDSAD 130 (293)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99999997544333335678888999988765
No 485
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=37.37 E-value=3.9e+02 Score=25.83 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=63.5
Q ss_pred cCHHHhHhhHhcCCcEEEEcc--CCCHHHHHHHHHHHHhcCCCceEEEec-------CCh--hhhhhHHHHHHh-----C
Q 010610 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKI-------ESA--DSIPNLHSIITA-----S 340 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSf--V~saedV~~lr~~l~~~~~~i~IIaKI-------Et~--~aveNldeIl~~-----s 340 (506)
.+.+|++.+++.|+|.|.+.. ..+++.+.++.+.. +.++.+-..+ ..- ..-.+..|+++. +
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~---~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~ 160 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF---PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGV 160 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh---CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCC
Confidence 367888888899999887754 34444555444433 2222211111 100 001122233222 5
Q ss_pred CEEEEc-CCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhC-cceeEeeccc
Q 010610 341 DGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLSGET 418 (506)
Q Consensus 341 DGImIa-RGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG-~D~vmLs~ET 418 (506)
|.+++- +.-=+..-|. ++ +.+-+.++....|+|.+..+ -+. .|+......| +|++|+..=-
T Consensus 161 ~~ii~~~~~~~g~~~G~-d~----~~i~~l~~~~~ipvia~GGi---------~~~---~di~~~~~~g~~~gv~vg~a~ 223 (233)
T PRK00748 161 KAIIYTDISRDGTLSGP-NV----EATRELAAAVPIPVIASGGV---------SSL---DDIKALKGLGAVEGVIVGRAL 223 (233)
T ss_pred CEEEEeeecCcCCcCCC-CH----HHHHHHHHhCCCCEEEeCCC---------CCH---HHHHHHHHcCCccEEEEEHHH
Confidence 766554 3211222231 22 22223344567999987533 333 4566666667 9999986333
Q ss_pred cCCCCH
Q 010610 419 AHGKFP 424 (506)
Q Consensus 419 A~G~yP 424 (506)
-.|+++
T Consensus 224 ~~~~~~ 229 (233)
T PRK00748 224 YEGKFD 229 (233)
T ss_pred HcCCcC
Confidence 344433
No 486
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=37.26 E-value=1.8e+02 Score=29.60 Aligned_cols=145 Identities=19% Similarity=0.324 Sum_probs=79.7
Q ss_pred cCHHHhHhhHhcCCcEEEEcc----CC-------CHHHHHHHHHHHHhcCCCceEEEecCC----hhhhhhHHHHHHh-C
Q 010610 277 KDWDDIKFGVDNKVDFYAVSF----VK-------DAQVVHELKNYLKSCGADIHVIVKIES----ADSIPNLHSIITA-S 340 (506)
Q Consensus 277 kD~~dI~~al~~gvD~IalSf----V~-------saedV~~lr~~l~~~~~~i~IIaKIEt----~~aveNldeIl~~-s 340 (506)
+|+..+...++.++|++=+.+ +. ..+...++.+.+++ -.++++++|+=- ..-..-+.+..+. .
T Consensus 112 ~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~-~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~ 190 (295)
T PF01180_consen 112 EDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVRE-AVDIPVFVKLSPNFTDIEPFAIAAELAADGA 190 (295)
T ss_dssp HHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHH-HHSSEEEEEE-STSSCHHHHHHHHHHHTHTE
T ss_pred HHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHh-ccCCCEEEEecCCCCchHHHHHHHHhhccce
Confidence 344444444568899986643 21 12223333333332 226899999854 2222223333222 6
Q ss_pred CEEE----EcCCC-cccCC-------------CCCcHHHHHHHHHHHHHHcC--CcEEEEehhhhhhhcCCCCChhhccc
Q 010610 341 DGAM----VARGD-LGAEL-------------PIEEVPLLQEEIIRTCRSMG--KAVIVATNMLESMIVHPTPTRAEVSD 400 (506)
Q Consensus 341 DGIm----IaRGD-Lgvel-------------g~e~V~~~Qk~II~~c~~~G--kPvivATqmLeSMi~~~~PtRAEv~D 400 (506)
|||. +..++ +-.+- |..--+.+.+.+-+.++..+ .|+|-.+-+. | ..|
T Consensus 191 ~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~---------s---~~d 258 (295)
T PF01180_consen 191 DGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIH---------S---GED 258 (295)
T ss_dssp CEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS-----------S---HHH
T ss_pred eEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcC---------C---HHH
Confidence 8887 44444 22221 11234777888877777777 8877665443 2 348
Q ss_pred HHHHHHhCcceeEeeccc-cCCCCHHHHHHHHHHHHHHHhc
Q 010610 401 IAIAVREGADAVMLSGET-AHGKFPLKAVKVMHTVSLRTEA 440 (506)
Q Consensus 401 vanav~dG~D~vmLs~ET-A~G~yPveaV~~m~~I~~~aE~ 440 (506)
+..+++.|||+|.+..-. -.|. ....+|+++.|.
T Consensus 259 a~e~l~aGA~~Vqv~Sal~~~Gp------~~~~~i~~~L~~ 293 (295)
T PF01180_consen 259 AIEFLMAGASAVQVCSALIYRGP------GVIRRINRELEE 293 (295)
T ss_dssp HHHHHHHTESEEEESHHHHHHGT------THHHHHHHHHHH
T ss_pred HHHHHHhCCCHheechhhhhcCc------HHHHHHHHHHHh
Confidence 999999999999996332 1133 234555555554
No 487
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=37.06 E-value=1.9e+02 Score=27.85 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 360 PLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 360 ~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
..+....++.++++|++|.+.| ++ +. .+...++..|+|+++-
T Consensus 176 ~~~~~~~v~~~~~~G~~v~~wt------vn----~~---~~~~~~~~~Gvd~i~T 217 (220)
T cd08579 176 STLNKEFIRQAHQNGKKVYVWT------VN----DP---DDMQRYLAMGVDGIIT 217 (220)
T ss_pred hhcCHHHHHHHHHCCCEEEEEc------CC----CH---HHHHHHHHcCCCEEeC
Confidence 3356789999999999999987 11 22 2356788889999863
No 488
>PLN02550 threonine dehydratase
Probab=36.93 E-value=4.9e+02 Score=29.96 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccC
Q 010610 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (506)
Q Consensus 365 ~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 444 (506)
-+...|+..|.++.+. .|..+-...+...-..|++.++. |...-++.+...+++++ +...+.
T Consensus 171 gvA~aA~~lGika~Iv-----------mP~~tp~~Kv~~~r~~GAeVvl~------g~~~dea~~~A~~la~e-~g~~fi 232 (591)
T PLN02550 171 GVALSAQRLGCDAVIA-----------MPVTTPEIKWQSVERLGATVVLV------GDSYDEAQAYAKQRALE-EGRTFI 232 (591)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEe------CCCHHHHHHHHHHHHHh-cCCEEE
Confidence 3455799999999886 23332233355566789977665 23344777777766654 222111
Q ss_pred CCCCCCCCcCcCCChHHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEeC
Q 010610 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTN 505 (506)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a-~Iiv~T~sG~tA----~~lS~~RP~~pIia~T~ 505 (506)
..|++ ......-..-+.++.++++ . .|||..-+|.+. ..+-.++|...|++|-+
T Consensus 233 -~pfdd------p~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp 293 (591)
T PLN02550 233 -PPFDH------PDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEP 293 (591)
T ss_pred -CCCCC------hHHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11111 1122233344667888875 4 889988888765 45555689999999865
No 489
>PRK06852 aldolase; Validated
Probab=36.83 E-value=83 Score=33.06 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=49.6
Q ss_pred HhhHhcCCcEEEEccC-----CCHHHHHHHHHHHHhcCCCceEEE---ecCChhhhhhHHHHHH-h-CCEEEEcCCCccc
Q 010610 283 KFGVDNKVDFYAVSFV-----KDAQVVHELKNYLKSCGADIHVIV---KIESADSIPNLHSIIT-A-SDGAMVARGDLGA 352 (506)
Q Consensus 283 ~~al~~gvD~IalSfV-----~saedV~~lr~~l~~~~~~i~IIa---KIEt~~aveNldeIl~-~-sDGImIaRGDLgv 352 (506)
+.|.+.|+|+|=+.|. .+++.++++.+. ++.-..+|+ |....+.++.+.+.++ . +-|+.+||-=+--
T Consensus 195 RiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~---~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~ 271 (304)
T PRK06852 195 GVAACLGADFVKVNYPKKEGANPAELFKEAVLA---AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQK 271 (304)
T ss_pred HHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHh---CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcC
Confidence 4678999999999998 666777666543 344445665 6655677888888877 3 6799999876544
Q ss_pred CCC
Q 010610 353 ELP 355 (506)
Q Consensus 353 elg 355 (506)
+-|
T Consensus 272 ~~p 274 (304)
T PRK06852 272 PLD 274 (304)
T ss_pred CCc
Confidence 443
No 490
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.76 E-value=1e+02 Score=31.76 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=46.4
Q ss_pred CccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhhHHHHHHh-CCEEEEcC
Q 010610 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (506)
Q Consensus 275 tekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDGImIaR 347 (506)
+-.+.++++.+.+.|+|||++.. -+.++++++++.+. ..+. +|-.-| .+|+.++++. +|+|-++.
T Consensus 194 sv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~---~~i~----i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLVP---SAIV----TEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC---CCce----EEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 44577888889999999999975 56777877776552 2333 222223 4688888887 89999874
No 491
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.71 E-value=1.3e+02 Score=25.83 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 010610 302 QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (506)
Q Consensus 302 edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~~Qk~II~~c~~~GkPvivA 380 (506)
--+..+++++++.|-+..+.+ -++.++++.+...|.|+++ +.+...++++-+.+...|+||.+-
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEEe
Confidence 345778888888777655433 2455566666667988886 368889999999999999999864
No 492
>PRK08329 threonine synthase; Validated
Probab=36.53 E-value=4.8e+02 Score=27.38 Aligned_cols=103 Identities=18% Similarity=0.093 Sum_probs=60.8
Q ss_pred HHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEeeccccCCCCHHHHHHHHHHHHHHHhccccCC
Q 010610 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (506)
Q Consensus 366 II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 445 (506)
+...|+++|.++.+. .|..+.-..+...-..|++.+... |.|. ++.+...++.++-+ .++.
T Consensus 119 lA~~aa~~G~~~~v~-----------vp~~~~~~k~~~~~~~GA~v~~v~-----~~~~-~~~~~a~~l~~~~~--~~~~ 179 (347)
T PRK08329 119 LALYSLSEGIKVHVF-----------VSYNASKEKISLLSRLGAELHFVE-----GDRM-EVHEEAVKFSKRNN--IPYV 179 (347)
T ss_pred HHHHHHHcCCcEEEE-----------ECCCChHHHHHHHHHcCCEEEEEC-----CCHH-HHHHHHHHHHHhcC--Ceec
Confidence 346789999999987 344444445777888999888774 3454 46665555544322 1121
Q ss_pred CCCCCCCcCcCCChHHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHh
Q 010610 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSH 493 (506)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a--~Iiv~T~sG~tA~~lS~ 493 (506)
..+.+ +. ..+.....+.++.++++. .||+.+-+|.+..-+++
T Consensus 180 ~~~~n---p~---~~eG~~t~~~Ei~eql~~pD~vvvpvG~Gg~l~Gi~~ 223 (347)
T PRK08329 180 SHWLN---PY---FLEGTKTIAYEIYEQIGVPDYAFVPVGSGTLFLGIWK 223 (347)
T ss_pred cCCCC---ch---hhccchhHHHHHHHHcCCCCEEEEeCCcHHHHHHHHH
Confidence 11111 11 112222334567777764 89999999988766554
No 493
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=36.06 E-value=3.7e+02 Score=25.72 Aligned_cols=99 Identities=11% Similarity=0.142 Sum_probs=52.7
Q ss_pred HHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecC-------ChhhhhhHHHHHHhCCEEEEcCCCccc
Q 010610 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIE-------SADSIPNLHSIITASDGAMVARGDLGA 352 (506)
Q Consensus 280 ~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIE-------t~~aveNldeIl~~sDGImIaRGDLgv 352 (506)
+.++...++|++.+++.=. ..++...+.++.+.. ..+....-+= +.+.++.+++.+..-....| |..|.
T Consensus 19 ~~l~~~~~~gv~~~v~~~~-~~~~~~~~~~la~~~-~~i~~~~G~hP~~~~~~~~~~~~~l~~~~~~~~~~~I--GeiGl 94 (251)
T cd01310 19 DVLARAREAGVIKIIVVGT-DLKSSKRALELAKKY-DNVYAAVGLHPHDADEHVDEDLDLLELLAANPKVVAI--GEIGL 94 (251)
T ss_pred HHHHHHHHcCCCEEEEeCC-CHHHHHHHHHHHHhC-CCeEEEEeeCcchhhcCCHHHHHHHHHHhcCCCEEEE--Eeeec
Confidence 4455566789887665533 356777777765543 3333222221 11224444444432223333 34444
Q ss_pred CCCCC-cHHHHH----HHHHHHHHHcCCcEEEEeh
Q 010610 353 ELPIE-EVPLLQ----EEIIRTCRSMGKAVIVATN 382 (506)
Q Consensus 353 elg~e-~V~~~Q----k~II~~c~~~GkPvivATq 382 (506)
+.... .-...| +.+++.|++.|+||.+.|.
T Consensus 95 d~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~ 129 (251)
T cd01310 95 DYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSR 129 (251)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 33211 112244 4568899999999999873
No 494
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=36.06 E-value=5.5e+02 Score=27.21 Aligned_cols=133 Identities=22% Similarity=0.167 Sum_probs=71.2
Q ss_pred HHHhHhhHhcCCcEEEEccCCCH---------------HHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh----
Q 010610 279 WDDIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA---- 339 (506)
Q Consensus 279 ~~dI~~al~~gvD~IalSfV~sa---------------edV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~---- 339 (506)
.+||+.+++.|+|.|.+.+--|. +.+.+..++.++.|..+.+-+--.+..-.+.+.++++.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 154 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEA 154 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHc
Confidence 67889999999999887765543 22223445555666554433322233334444444443
Q ss_pred -CCEEEEcCCC-cccCCCCCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHH---HHHhCcceeEe
Q 010610 340 -SDGAMVARGD-LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI---AVREGADAVML 414 (506)
Q Consensus 340 -sDGImIaRGD-Lgvelg~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvan---av~dG~D~vmL 414 (506)
+|.|-++ | .|.-.| +++...-+.+ ++..+.|+.+.++ ...--| +|| |+..|+|.+=-
T Consensus 155 Ga~~i~l~--DT~G~~~P-~~v~~lv~~l---~~~~~v~l~~H~H--------Nd~GlA----~ANalaA~~aGa~~vd~ 216 (365)
T TIGR02660 155 GADRFRFA--DTVGILDP-FSTYELVRAL---RQAVDLPLEMHAH--------NDLGMA----TANTLAAVRAGATHVNT 216 (365)
T ss_pred CcCEEEEc--ccCCCCCH-HHHHHHHHHH---HHhcCCeEEEEec--------CCCChH----HHHHHHHHHhCCCEEEE
Confidence 4554442 3 222222 2333333333 3344788888874 222222 445 77888886532
Q ss_pred e----ccccCCCCHHHHHHH
Q 010610 415 S----GETAHGKFPLKAVKV 430 (506)
Q Consensus 415 s----~ETA~G~yPveaV~~ 430 (506)
| || ..|+=|+|.|-+
T Consensus 217 tl~GiGe-raGN~~lE~lv~ 235 (365)
T TIGR02660 217 TVNGLGE-RAGNAALEEVAM 235 (365)
T ss_pred Eeecccc-ccccCCHHHHHH
Confidence 1 44 467778777654
No 495
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=36.01 E-value=3.6e+02 Score=27.71 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=86.5
Q ss_pred CCCCccCHHHh-HhhHh--cCCcEEEEccCCCHHHHHHHHHHHHhcCC-CceEEEecCChhhhhhHHHHHHhCC-EEEEc
Q 010610 272 PSITEKDWDDI-KFGVD--NKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITASD-GAMVA 346 (506)
Q Consensus 272 p~ltekD~~dI-~~al~--~gvD~IalSfV~saedV~~lr~~l~~~~~-~i~IIaKIEt~~aveNldeIl~~sD-GImIa 346 (506)
|..|+.|.+.+ +.|.+ .++..|+++ +..+..+++.|...+. ++++.+=|==|.|-...+..+..+. ++--|
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~G 96 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYG 96 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 66677775554 56777 477777664 6788899998864343 5777777777777666655544310 00000
Q ss_pred C--CCcccCCCC------CcHHHHHHHHHHHHHHcCCc--EEEEehhhhhhhcCCCCChhh-cccHH-HHHHhCcceeEe
Q 010610 347 R--GDLGAELPI------EEVPLLQEEIIRTCRSMGKA--VIVATNMLESMIVHPTPTRAE-VSDIA-IAVREGADAVML 414 (506)
Q Consensus 347 R--GDLgvelg~------e~V~~~Qk~II~~c~~~GkP--vivATqmLeSMi~~~~PtRAE-v~Dva-nav~dG~D~vmL 414 (506)
- =|+-+.++. +.+..-.+.+...|.. |+| ||+=|..| +..| +.... -++..|+|.|==
T Consensus 97 AdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt~~L---------~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 97 ADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVIIETGEL---------KDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred CCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEEecccc---------CCHHHHHHHHHHHHHhCCCEEEc
Confidence 0 022223332 2344444555555542 344 66666555 4453 55444 377889998764
Q ss_pred eccccCCCCH----HHHHHHHHHHHHH
Q 010610 415 SGETAHGKFP----LKAVKVMHTVSLR 437 (506)
Q Consensus 415 s~ETA~G~yP----veaV~~m~~I~~~ 437 (506)
+.|..| ++.|+.|.+.+++
T Consensus 167 ----STGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 167 ----STGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred ----CCCCCCCCCCHHHHHHHHHHHHh
Confidence 355543 6899999887765
No 496
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=35.91 E-value=2.2e+02 Score=23.69 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=38.9
Q ss_pred CCCCHHHHHH-HHHhCCcEEEEeCCCCChHHHHHHHHHHHHHHHhcCCceEEEEee
Q 010610 119 STNTREMIWK-LAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLD 173 (506)
Q Consensus 119 ss~~~e~i~~-li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~Il~D 173 (506)
.+.+=|.+.. +-..|+.++|-+-++|.....+++++.+++ | +.++|..|
T Consensus 18 ~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-----G-~~~~itpD 67 (74)
T PF04028_consen 18 RSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-----G-YSIAITPD 67 (74)
T ss_pred cCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-----C-CeEEEeCC
Confidence 3567777777 556899999999999988888888777662 3 78999988
No 497
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.87 E-value=5.9e+02 Score=27.46 Aligned_cols=207 Identities=17% Similarity=0.218 Sum_probs=120.4
Q ss_pred hHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHhCCEEEEcCCCcccCCCCCcHHH
Q 010610 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPL 361 (506)
Q Consensus 282 I~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDGImIaRGDLgvelg~e~V~~ 361 (506)
|+..-+.|+|.|-++ |.+.++...++++-++. ++++++-|-=.-=+ -++.+-..+|.+-|-||..|..=
T Consensus 42 I~~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~rl-a~~~~~~g~~k~RINPGNig~~~------- 110 (361)
T COG0821 42 IKALERAGCDIVRVT-VPDMEAAEALKEIKQRL--NVPLVADIHFDYRL-ALEAAECGVDKVRINPGNIGFKD------- 110 (361)
T ss_pred HHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhC--CCCEEEEeeccHHH-HHHhhhcCcceEEECCcccCcHH-------
Confidence 344456899998776 66666666666655443 78899977533100 11222122799999999876543
Q ss_pred HHHHHHHHHHHcCCcEEEE--ehhhhhhhc--CCCCChhhc-----ccHHHHHHhCcceeEeeccccCCCCHHHHHHHHH
Q 010610 362 LQEEIIRTCRSMGKAVIVA--TNMLESMIV--HPTPTRAEV-----SDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 432 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivA--TqmLeSMi~--~~~PtRAEv-----~Dvanav~dG~D~vmLs~ETA~G~yPveaV~~m~ 432 (506)
--+.++++|+++|||+=+- ..-||..+. -..||+.-+ ..+.-+-..|++=+.+| ....-|.+.|+.-+
T Consensus 111 ~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS---~K~Sdv~~~v~aYr 187 (361)
T COG0821 111 RVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVS---VKASDVQLMVAAYR 187 (361)
T ss_pred HHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHHHHHH
Confidence 4578999999999996443 333433222 225666432 22334667889999998 55666777777776
Q ss_pred HHHHHHhccccCCCCCCCCCcCcCCChHHHHHHHHHHHHhhcCceE-EEEcCC-------hHHHHHHHhhCCCCeEEEEe
Q 010610 433 TVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSI-VVFTRT-------GFMAILLSHYRPSGTIFAFT 504 (506)
Q Consensus 433 ~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~I-iv~T~s-------G~tA~~lS~~RP~~pIia~T 504 (506)
.++.+.+.-+. ... .+.+..++-....+++.+. .+++-+|-.| |-+|.. |+--..-..+|+..|-+.-|
T Consensus 188 ~lA~~~dyPLH-LGv-TEAG~~~~G~VkSa~alg~-LL~eGIGDTIRVSLt~~P~~EV~V~~eILqslglR~~~v~~iaC 264 (361)
T COG0821 188 LLAKRCDYPLH-LGV-TEAGMGFKGIVKSAAALGA-LLSEGIGDTIRVSLTADPVEEVKVAQEILQSLGLRSRGVEVIAC 264 (361)
T ss_pred HHHHhcCCCcc-cce-ecccCcccceehHHHHHHH-HHHhcCCceEEEecCCCchhhhHHHHHHHHHhCccccCceEEEC
Confidence 66665552110 000 0011112234456666654 4566666544 334533 33444556677777776666
Q ss_pred C
Q 010610 505 N 505 (506)
Q Consensus 505 ~ 505 (506)
|
T Consensus 265 P 265 (361)
T COG0821 265 P 265 (361)
T ss_pred C
Confidence 5
No 498
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=35.83 E-value=1.9e+02 Score=27.75 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeEe
Q 010610 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (506)
Q Consensus 362 ~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vmL 414 (506)
+....++.|+++|++|.+.|- + + ..+...++..|+|+++-
T Consensus 187 ~~~~~v~~~~~~g~~v~~wTv------n----~---~~~~~~~~~~gVdgiiT 226 (229)
T cd08562 187 LTEEQVKALKDAGYKLLVYTV------N----D---PARAAELLEWGVDAIFT 226 (229)
T ss_pred CCHHHHHHHHHCCCEEEEEeC------C----C---HHHHHHHHHCCCCEEEc
Confidence 346899999999999999872 1 1 23466788889999864
No 499
>PRK09989 hypothetical protein; Provisional
Probab=35.81 E-value=4.4e+02 Score=25.96 Aligned_cols=162 Identities=12% Similarity=0.051 Sum_probs=87.3
Q ss_pred CCccccCCCccCCCCCCccCHHHhHhhHhcCCcEEEEccCCCHHHHHHHHHHHHhcCCCceEEE----ecC--------C
Q 010610 259 RRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV----KIE--------S 326 (506)
Q Consensus 259 ~KgVnlp~~~~~lp~ltekD~~dI~~al~~gvD~IalSfV~saedV~~lr~~l~~~~~~i~IIa----KIE--------t 326 (506)
++++|+.-.-.++| -.+.|+.+.++|.|+|=+.+... .+..++++++++.|-.+..+. .+- .
T Consensus 3 ~~~~~~~~~~~~~~-----l~~~l~~~~~~Gfd~VEl~~~~~-~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~ 76 (258)
T PRK09989 3 RFAANLSMMFTEVP-----FIERFAAARKAGFDAVEFLFPYD-YSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSAL 76 (258)
T ss_pred ceeeehhhhhcCCC-----HHHHHHHHHHcCCCEEEECCccc-CCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCC
Confidence 44555544433322 13567888999999998876433 457788898988776554432 110 0
Q ss_pred ----hhhhhhHHHHHHh-----CCEEEEcCCCcccCCC----CCcHHHHHHHHHHHHHHcCCcEEEEehhhhhhh--cCC
Q 010610 327 ----ADSIPNLHSIITA-----SDGAMVARGDLGAELP----IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMI--VHP 391 (506)
Q Consensus 327 ----~~aveNldeIl~~-----sDGImIaRGDLgvelg----~e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi--~~~ 391 (506)
.+..+.++..++. ++.|.+..|-+.-... .+.+...-+++...|++.|..+.+-. |..+. ...
T Consensus 77 ~~~~~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~--l~~~~~~~~~ 154 (258)
T PRK09989 77 PGREHEARADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEA--LSPGVKPHYL 154 (258)
T ss_pred CccHHHHHHHHHHHHHHHHHhCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe--CCCCCCCCCc
Confidence 2234556666543 5677776665421111 11255556778888888898766431 11100 011
Q ss_pred CCChhhcccHHHHHHhCcceeEeecccc----CCCCHHHHHHH
Q 010610 392 TPTRAEVSDIAIAVREGADAVMLSGETA----HGKFPLKAVKV 430 (506)
Q Consensus 392 ~PtRAEv~Dvanav~dG~D~vmLs~ETA----~G~yPveaV~~ 430 (506)
..|.++..++...+ +.+.+.+.-+|. .|.-|.+.++.
T Consensus 155 ~~~~~~~~~ll~~v--~~~~v~l~lD~~h~~~~~~~~~~~i~~ 195 (258)
T PRK09989 155 FSSQYQALAIVEEV--ARDNVFIQLDTFHAQKVDGNLTHLIRD 195 (258)
T ss_pred cCCHHHHHHHHHHc--CCCCeEEEeehHhHHHcCCCHHHHHHH
Confidence 22333333333333 345565555552 34456666654
No 500
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=35.79 E-value=3.2e+02 Score=28.99 Aligned_cols=113 Identities=22% Similarity=0.221 Sum_probs=75.6
Q ss_pred CHHHhHhhHhc-CCcEEEEccCC-CHHHHHHHHHHHHhcCCCceEEEecCChhhhhhHHHHHHh-CCEEEEcCCCcccCC
Q 010610 278 DWDDIKFGVDN-KVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAEL 354 (506)
Q Consensus 278 D~~dI~~al~~-gvD~IalSfV~-saedV~~lr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDGImIaRGDLgvel 354 (506)
..+.....++. |+-.+..+|-. ..+++..++.+ .+.++.++=|..--.. -.+. .|+++.-..|=|-+.
T Consensus 92 ~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~------g~~v~~~v~~~~~A~~---~~~~G~d~vI~~g~eAGGH~ 162 (336)
T COG2070 92 AEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAA------GIKVIHSVITVREALK---AERAGADAVIAQGAEAGGHR 162 (336)
T ss_pred hHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHc------CCeEEEEeCCHHHHHH---HHhCCCCEEEecCCcCCCcC
Confidence 34444556666 99999999995 77777777662 3567776666532211 1122 799999887777777
Q ss_pred CC----CcHHHHHHHHHHHHHHcCCcEEEEehhhhhhhcCCCCChhhcccHHHHHHhCcceeE
Q 010610 355 PI----EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVM 413 (506)
Q Consensus 355 g~----e~V~~~Qk~II~~c~~~GkPvivATqmLeSMi~~~~PtRAEv~Dvanav~dG~D~vm 413 (506)
|. ........+|.+.++. .|||.|.-+-+. .+++.|...|+|++-
T Consensus 163 g~~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~dg------------~~i~AAlalGA~gVq 211 (336)
T COG2070 163 GGVDLEVSTFALVPEVVDAVDG--IPVIAAGGIADG------------RGIAAALALGADGVQ 211 (336)
T ss_pred CCCCCCccHHHHHHHHHHHhcC--CCEEEecCccCh------------HHHHHHHHhccHHHH
Confidence 62 3446666677766655 899999865543 357788888888764
Done!