Your job contains 1 sequence.
>010611
MTGSRFNEANLQETIHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISH
ETIRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEALSI
ETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDAR
TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG
PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII
SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT
ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS
PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI
GSVYGENGSNLLRLRQVSCILNVFAY
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010611
(506 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 428 3.9e-40 1
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 326 6.7e-31 3
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 292 2.2e-24 2
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 299 9.0e-24 1
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 270 2.0e-21 2
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 263 4.8e-20 1
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 232 2.1e-18 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 223 5.7e-16 1
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 201 6.3e-16 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 184 9.2e-16 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 184 9.2e-16 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 220 1.2e-15 1
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 220 1.2e-15 1
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 220 1.2e-15 1
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 220 1.2e-15 1
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 219 8.6e-15 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 188 1.5e-14 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 210 2.0e-14 1
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 210 2.0e-14 1
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 185 4.4e-14 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 186 5.6e-14 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 182 6.5e-14 2
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 201 6.7e-14 1
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 185 8.4e-14 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 182 9.1e-14 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 179 1.7e-13 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 179 1.7e-13 2
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 182 2.8e-13 1
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 177 3.6e-13 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 177 3.8e-13 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 198 4.3e-13 1
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 179 5.9e-13 1
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 201 7.1e-13 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 196 8.0e-13 1
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 177 8.2e-13 2
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 176 8.9e-13 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 176 9.3e-13 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 177 9.4e-13 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 177 9.6e-13 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 177 9.6e-13 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 177 9.6e-13 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 177 9.6e-13 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 169 1.7e-12 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 190 2.1e-12 1
UNIPROTKB|F1M8T3 - symbol:F1M8T3 "Uncharacterized protein... 171 4.3e-12 1
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 167 8.4e-12 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 165 9.2e-12 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 190 1.1e-11 1
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 167 1.2e-11 1
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 166 1.5e-11 1
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 158 2.8e-11 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 161 3.8e-11 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 161 3.8e-11 2
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 160 6.1e-11 2
UNIPROTKB|K7GM69 - symbol:RFC4 "Uncharacterized protein" ... 160 6.7e-11 1
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 158 6.8e-11 2
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 158 7.0e-11 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 158 8.3e-11 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 158 8.3e-11 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 158 8.3e-11 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 158 8.4e-11 2
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 158 1.1e-10 1
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 170 7.7e-10 1
UNIPROTKB|F8VXH9 - symbol:PCBP2 "Poly(rC)-binding protein... 150 8.0e-10 1
UNIPROTKB|F8W1G6 - symbol:PCBP2 "Poly(rC)-binding protein... 149 1.0e-09 1
ASPGD|ASPL0000075803 - symbol:AN4546 species:162425 "Emer... 170 1.7e-09 1
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 145 2.1e-09 2
ZFIN|ZDB-GENE-080211-1 - symbol:nova2 "neuro-oncological ... 143 2.4e-09 3
TAIR|locus:2184362 - symbol:BTR1L "AT5G04430" species:370... 150 2.5e-09 2
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 143 2.7e-09 2
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 143 2.9e-09 2
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 144 2.9e-09 2
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 143 3.0e-09 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 145 3.1e-09 2
WB|WBGene00003978 - symbol:pes-4 species:6239 "Caenorhabd... 164 5.1e-09 1
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 138 1.0e-08 2
ZFIN|ZDB-GENE-070912-44 - symbol:igf2bp2a "insulin-like g... 163 1.2e-08 1
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 145 3.5e-08 2
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 107 4.1e-08 3
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 107 4.1e-08 3
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 106 4.1e-08 3
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 106 4.1e-08 3
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 144 4.4e-08 2
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 144 4.4e-08 2
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 144 4.4e-08 2
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 105 5.3e-08 3
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 142 6.4e-08 2
UNIPROTKB|I3LRF8 - symbol:PCBP3 "Uncharacterized protein"... 148 8.5e-08 1
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 98 9.0e-08 3
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 98 9.0e-08 3
TAIR|locus:2043530 - symbol:AT2G25970 "AT2G25970" species... 155 9.7e-08 1
RGD|1307004 - symbol:Fubp3 "far upstream element (FUSE) b... 146 1.0e-07 2
UNIPROTKB|G3V829 - symbol:Fubp3 "RCG45587" species:10116 ... 146 1.0e-07 2
UNIPROTKB|Q96I24 - symbol:FUBP3 "Far upstream element-bin... 147 2.1e-07 2
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 150 2.2e-07 1
UNIPROTKB|K7GQ87 - symbol:RFC4 "Uncharacterized protein" ... 150 2.4e-07 1
UNIPROTKB|K7GKD3 - symbol:RFC4 "Uncharacterized protein" ... 150 2.5e-07 1
UNIPROTKB|F1SFK0 - symbol:RFC4 "Uncharacterized protein" ... 150 2.6e-07 1
UNIPROTKB|F1PDI8 - symbol:IGF2BP2 "Uncharacterized protei... 150 2.6e-07 1
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 136 2.6e-07 2
WARNING: Descriptions of 95 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 428 (155.7 bits), Expect = 3.9e-40, P = 3.9e-40
Identities = 117/326 (35%), Positives = 170/326 (52%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
++EV+FR+LC DKVG++IGKGG ++RALQ+E+GA I V + +ER+I ++A E E
Sbjct: 273 EEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLE 332
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
R+S AQ V+ V +R++E + F + ++ ARL+V S +G LLGKGG +ISE
Sbjct: 333 RRHSLAQDGVMRVHNRIVE------IGFEPSAAVV--ARLLVHSPYIGRLLGKGGHLISE 384
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MR+ TG SIR+ + DQ K S++D +VQ+ G V+DA++ + RLR+ F G L
Sbjct: 385 MRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQ 444
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP--PLTQGMDH-LGLSH----S 414
PY + P FG A + P P + H G
Sbjct: 445 GMGGPPPPFM--GPYP--EPPPPFGPRQYPASPDRYHSPVGPFHERHCHGPGFDRPPGPG 500
Query: 415 LDCPSSPKLWTAQTVTGVHLRGS--SDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVE 472
D P SP WT Q H G DV G++ ++T+ VE
Sbjct: 501 FDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFA--------LRNEPIGSENPVMTSANVE 552
Query: 473 IIVPENVIGSVYGENGSNLLRLRQVS 498
I++P+ +G VYGEN SNL ++QVS
Sbjct: 553 IVIPQAYLGHVYGENCSNLNYIKQVS 578
Score = 165 (63.1 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 43/120 (35%), Positives = 68/120 (56%)
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSS-NKGLLVN-ARLVVASNQVGCLL 293
T+ E S AQ A++ VF R++ G +D +KG R++V NQV L+
Sbjct: 104 TSGGDDEEAPSSAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLM 163
Query: 294 GKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
KGG +I ++R+ +G +RI S DQ+ C D V+Q++G+FS VK A+ VT L+++
Sbjct: 164 SKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQES 223
Score = 124 (48.7 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 171 SDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP-ECD 229
S R AT T + V FR+LC + GA+IGKGG++IR LQS G+ I V +P +
Sbjct: 6 SKRPAT--TATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSE 63
Query: 230 ERLITVTASEG 240
ER++ + A G
Sbjct: 64 ERVVLIIAPSG 74
Score = 39 (18.8 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 7/38 (18%), Positives = 23/38 (60%)
Query: 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
N +V+ +G + G+ + ++ +++V+G ++ ++ D
Sbjct: 550 NVEIVIPQAYLGHVYGENCSNLNYIKQVSGANV-VVHD 586
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 326 (119.8 bits), Expect = 6.7e-31, Sum P(3) = 6.7e-31
Identities = 81/200 (40%), Positives = 123/200 (61%)
Query: 155 SSSISYVSAVRPLSLESDRVATLDA-RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQS 213
SSS+S + + + S+R D + +++V F+I+ ++ G +IGK GTIIRALQ+
Sbjct: 249 SSSLSNATEI----VASNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQN 304
Query: 214 EAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273
E GA ISVGA + ER++TV+A E ESRYS AQ A+ LVF+R +E EKGL +
Sbjct: 305 ETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFARSVEIDVEKGLRPGLH 364
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI-ISDQLLKCISENDRVVQIS 332
G +V +L+V S+ G G E TG + I + +Q+L+ ISEN+ V++I
Sbjct: 365 NGAIVKTKLLVPSHFANSFNGNGNR---EAIIATGADVHISVGNQVLEWISENEVVIEIK 421
Query: 333 GEFSKVKDAVYNVTGRLRDN 352
GE+S V+ A+ +V+ +LR+N
Sbjct: 422 GEYSHVQKALTHVSSKLREN 441
Score = 115 (45.5 bits), Expect = 6.6e-09, Sum P(4) = 6.6e-09
Identities = 30/108 (27%), Positives = 57/108 (52%)
Query: 246 SPAQKAVVLVFSRL-IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
S AQ A++ V R + ++ G + ++ NQ+G +LG GG + MR
Sbjct: 107 SAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMR 166
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+ +G IR++ + C ++ND ++QI+G+ VK A+ V+ +++N
Sbjct: 167 RNSGAMIRVLPPPI--CGTKNDELIQITGDVLAVKKALVMVSSYIQNN 212
Score = 69 (29.3 bits), Expect = 6.6e-09, Sum P(4) = 6.6e-09
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
E + R++C +G +IG G ++ L+ E G I + + D ++ + S
Sbjct: 24 ETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGS 77
Score = 67 (28.6 bits), Expect = 6.7e-31, Sum P(3) = 6.7e-31
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
V T+E+ V ++ +GS+YG +G+ + L+Q+S
Sbjct: 561 VRKITLELAVEKDALGSLYGRDGTGVDNLQQIS 593
Score = 41 (19.5 bits), Expect = 6.7e-31, Sum P(3) = 6.7e-31
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 402 LTQGMDHLGLSHSLDCPSSP 421
LTQGM L +S + D S P
Sbjct: 534 LTQGMKQLQMSSNGDVSSLP 553
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 292 (107.8 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 65/178 (36%), Positives = 104/178 (58%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV------T 236
+ + FR LC K+G+VIG+GG I++ L+++ + I +G +P CDER+IT+ T
Sbjct: 47 RDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDET 106
Query: 237 ASEGP-ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
+ G E SPAQ A+ + R++ + + S V A+L+V S+Q+GC+LG+
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRVVADDARS--EDSPEGEKQVTAKLLVPSDQIGCILGR 164
Query: 296 GGTIISEMRKVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
GG I+ +R TG IRI+ D+ + C +D ++QISGE VK A+ + RL +N
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222
Score = 287 (106.1 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 70/172 (40%), Positives = 105/172 (61%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E R++ + + +VIGKGG +I L+ E A I V ++ E ++ LIT++A E E
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISEM 303
YSP +AV+ RL S+K + GL+ RL+V S+++GC+LGKGG II+EM
Sbjct: 343 YSPTIEAVM----RLQPKCSDK---VERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEM 395
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R++T +IRI+ + L K S++D +VQISGE K+A+ +T RLR N F
Sbjct: 396 RRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 111 (44.1 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 34/114 (29%), Positives = 61/114 (53%)
Query: 172 DRVATLDARTQ-----QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GAT 224
DRV DAR++ +++V+ ++L +D++G ++G+GG I++ ++SE GA I +
Sbjct: 128 DRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRN 187
Query: 225 MPEC---DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKG 275
MP C + LI ++ +KA++ + SRL E S SS+ G
Sbjct: 188 MPLCALNSDELIQISGE------VLIVKKALLQIASRLHENPSRSQNLLSSSGG 235
Score = 51 (23.0 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++VP + IG + G+ G+ + +R+++
Sbjct: 371 TTRLLVPSSRIGCILGKGGAIITEMRRMT 399
Score = 45 (20.9 bits), Expect = 9.1e-24, Sum P(2) = 9.1e-24
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQ 496
T + ++ P I SV G+ G+ + +LRQ
Sbjct: 282 TEFFIRLVSPVENIASVIGKGGALINQLRQ 311
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 299 (110.3 bits), Expect = 9.0e-24, P = 9.0e-24
Identities = 80/230 (34%), Positives = 129/230 (56%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER-LITVTASE 239
++ ++++ +++CS+ K+G VIGKGG I+ ++ +G+ I V + D+ +ITVTA+E
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P+ S A +AV+L+ EK D +K V +L+V+S +GC++GK G+I
Sbjct: 372 SPDDLKSMAVEAVLLL--------QEKINDEDEDK---VKMQLLVSSKVIGCIIGKSGSI 420
Query: 300 ISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF---- 354
ISE+RK T I I + KC ND +V+ISGE S V+DA+ + RLRD+
Sbjct: 421 ISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRE 480
Query: 355 SGTLNTARTRS-TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT 403
+G+ N RS ++ + +S + L P SF S DF++ P T
Sbjct: 481 TGSRNQPPARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVDFNRRPET 530
Score = 161 (61.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 51/165 (30%), Positives = 82/165 (49%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT 224
R LS ES+ +D + V +RILC + +G+VIGK G +I ++ E A I V
Sbjct: 25 RRLSYESEE-KKIDNK-DDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDP 82
Query: 225 MPECDERLITVTAS----------EGPESRYS-P---AQKAVVLVFSRLIEGTSEKGLDF 270
P C ER+IT+ S E E YS P AQ A++ V ++ + +
Sbjct: 83 FPGCSERVITIFCSVSEKKDIVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENT 142
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
++ RL+V S+Q ++GK G+II +R T +++++S
Sbjct: 143 KIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVS 187
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 57/225 (25%), Positives = 92/225 (40%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
V +L+V+S +GC++GK G+IISE+RK T I I + + + E +
Sbjct: 399 VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKG------NNTPKCADPNDELVE 452
Query: 338 VKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSS---VAVS 394
+ V NV L + R R T S P +R ++ F SS +A+
Sbjct: 453 ISGEVSNVRDALIQIVLRLRDDVLRDRETGS---RNQPPARSENNNFFSSSSSNTGLALP 509
Query: 395 HDF-SQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXX 453
F S P +D + + SS + + G++ GS VG
Sbjct: 510 QSFMSSVPQVASVD---FNRRPETGSSMSMLPSSG--GIYGYGSFPVGN------TSYGS 558
Query: 454 XXXXXXXXXXAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+ +TT+E+ +P N +G V G G NL +R++S
Sbjct: 559 NSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRIS 603
Score = 45 (20.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
+++I + IG V G+ G + +RQ S
Sbjct: 319 IKVICSSSKIGRVIGKGGLTIKGIRQAS 346
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 270 (100.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 77/266 (28%), Positives = 135/266 (50%)
Query: 109 ESSHRSSEALS--IETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRP 166
ES HR + R F A + +P L Q + + ++ S
Sbjct: 251 ESQHRDRSNFQGRSHSPERSFAAAGDDYMPQLR----RQSSDRFPRGNFRNNNFSSRQSN 306
Query: 167 LSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP 226
+ E+ V + +E+ F+ILC DK+ V+G+ II LQ+E G + V +
Sbjct: 307 YAEEAPAVP-VGENVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVA 365
Query: 227 ECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVAS 286
DE++IT+++ E P+ + PAQ+A++ + +++I D +K L+ RL+V S
Sbjct: 366 GSDEQIITISSEEAPDDPFFPAQEALLHIQTQII--------DLIPDKDNLITTRLLVPS 417
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNV 345
CL GK G++ SE+ ++TGTS++I++ +++ +C S ND V+QI+GE ++A+ +
Sbjct: 418 RDSICLEGKAGSV-SEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVEL 476
Query: 346 TGRLRDNHFSGTLNTARTRSTSSVLT 371
T LR + F L+ T S+ T
Sbjct: 477 TLLLRSHMFK-ELSQKETPPASTSTT 501
Score = 225 (84.3 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 63/168 (37%), Positives = 94/168 (55%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE--GPESR 244
++RILC + K G VIGK GTII++++ GA+I+V +P ER+I ++ + P+ R
Sbjct: 69 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGR 128
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGL---------DFSSNK--GLLVNARLVVASNQVG 290
+SPAQ+A+ V R++E ++ G D+ + G V RLVV+ VG
Sbjct: 129 MPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 188
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKV 338
CLLGKGG II +MR T T IRI+ + S R V +S E ++
Sbjct: 189 CLLGKGGKIIEQMRIETKTHIRILPRE-----SNLPRCVSLSEEIVQI 231
Score = 188 (71.2 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGL---------DFSSNK--GLLVNARLVVASN 287
+G +SPAQ+A+ V R++E ++ G D+ + G V RLVV+
Sbjct: 126 DGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRM 185
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
VGCLLGKGG II +MR T T IRI+ L +C+S ++ +VQI GE + VK+A+ V
Sbjct: 186 HVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIV 245
Query: 346 TGRLRDN 352
+ RLR++
Sbjct: 246 SSRLRES 252
Score = 52 (23.4 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+VT +T+E+++PE V+ + ++ + L ++ + S
Sbjct: 573 LVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWS 606
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 263 (97.6 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 93/291 (31%), Positives = 143/291 (49%)
Query: 70 VPHDTIARPVEAVPQEILWRSLESGPQ-EILRRPLEVFAPESSHRSSEALSIETQHRLFG 128
VP D I + Q I ++ Q +++ L A SH E L I + +
Sbjct: 152 VPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSH--DELLLIIGEPLVVR 209
Query: 129 AVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAV-RPLSLESDR--VATLDARTQQQE 185
++ LH D S+ +L ++ SSS+ A+ +L S A +E
Sbjct: 210 EALYQVASLLH-DNPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDIADARE 268
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+C + VG VIGKGG I ++ E GA I V + + D+ +I +++ E E +
Sbjct: 269 FCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ- 327
Query: 246 SPAQKAVVLVFSRLIEGTSEK-GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA A + RL + SEK G D + L ++ RL+V+S+Q+GCL+GKGG +ISEMR
Sbjct: 328 SPAVNAAI----RLQQRCSEKVGKDAND---LAISTRLLVSSSQIGCLIGKGGAVISEMR 380
Query: 305 KVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
VT +IRI+ + + K E++ +VQI+G A+ V RLR N F
Sbjct: 381 SVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSF 431
Score = 256 (95.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 70/227 (30%), Positives = 116/227 (51%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASE-- 239
++ +R LC K G++IGKGG I + ++SE + + + +P C+ER++T+ T E
Sbjct: 42 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 101
Query: 240 --GPESRY-SPAQKAVVLVFSRLI-EGTSEKGLDFSSNKG--LLVNARLVVASNQVGCLL 293
G + PA A+ V ++ + + G D ++ G V R++V S+Q+GC++
Sbjct: 102 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 161
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRD 351
GKGG +I +R T IR+I D L C +D ++ I GE V++A+Y V L D
Sbjct: 162 GKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 221
Query: 352 NHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS 398
N S + + S+SS+ P + L A H + AV D +
Sbjct: 222 NP-SRFQHLLLSSSSSSM---HQPGAMLMSAALTSSHRNYAVRRDIA 264
Score = 40 (19.1 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQ 496
I P +G V G+ G + ++RQ
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQ 296
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 232 (86.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 62/188 (32%), Positives = 108/188 (57%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC--DERLITVTAS 238
++ +E+ F++LC + VIGKGG+ I+ ++ +G+ I V + +C DE +I VTA+
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
E P+ S A +AV+L+ + + +E V +L+V+S +GC++GK G+
Sbjct: 367 ESPDDMKSMAVEAVLLLQEYINDEDAEN-----------VKMQLLVSSKVIGCVIGKSGS 415
Query: 299 IISEMRKVTGTSIRIISDQLLKCISEN--DRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
+I+E+RK T +I CIS+ D +V++SGE S V+DA+ + RLR++ G
Sbjct: 416 VINEIRKRTNANI---------CISKGKKDDLVEVSGEVSSVRDALIQIVLRLREDVL-G 465
Query: 357 TLNTARTR 364
++ TR
Sbjct: 466 DKDSVATR 473
Score = 197 (74.4 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 60/184 (32%), Positives = 90/184 (48%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + + V +RILC D VG VIGK G +I A++ A I V + C +R+IT+
Sbjct: 28 DKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYC 87
Query: 238 S--EGPE------SRYSP---AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVAS 286
S E E S P AQ A++ V+ ++ E + ++ RL+V
Sbjct: 88 SVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPF 147
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIIS----DQLLKCISENDRVVQISGEFSKVKDAV 342
+Q L+GK G I +R+ T S++++S D C E D VV ISGE VK A+
Sbjct: 148 SQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQAL 207
Query: 343 YNVT 346
+ V+
Sbjct: 208 FAVS 211
Score = 64 (27.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+++ +EI++P + + V G+ G NL +R++S
Sbjct: 534 SSSALEILIPAHAMSKVMGKGGGNLENIRRIS 565
Score = 53 (23.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQ 496
N ++++V VIG V G++GS + +R+
Sbjct: 394 NVKMQLLVSSKVIGCVIGKSGSVINEIRK 422
Score = 43 (20.2 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS--CI 500
+++ P I V G+ GS + R+R+ S CI
Sbjct: 315 KVLCPLCNIMRVIGKGGSTIKRIREASGSCI 345
Score = 39 (18.8 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 473 IIVPENVIGSVYGENG 488
+IVP ++ SVY + G
Sbjct: 237 VIVPSDLSNSVYPQTG 252
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 223 (83.6 bits), Expect = 5.7e-16, P = 5.7e-16
Identities = 81/318 (25%), Positives = 146/318 (45%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
+SS + YS D ASF H+ S+ ++ D PPL + G +++ P
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFP-HTTPSMCLNPDLEGPPL-EAYTIQG-QYAIPQPDL 239
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVPENVI 480
KL + H + G+S + T T+ E+ +P ++I
Sbjct: 240 TKLHQL-AMQQSHFPMTHG-NTGFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLI 296
Query: 481 GSVYGENGSNLLRLRQVS 498
G + G G+ + +RQ+S
Sbjct: 297 GCIIGRQGAKINEIRQMS 314
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 201 (75.8 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 63/222 (28%), Positives = 110/222 (49%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPL 402
+SS + YS D ASF H+ S+ ++ D PPL
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFP-HTTPSMCLNPDLEGPPL 223
Score = 62 (26.9 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
A T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMS 301
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 184 (69.8 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 48/160 (30%), Positives = 84/160 (52%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG +++ D L + +R + I+G V + V +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 81 (33.6 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T TT E+ +P N+IG + G G+N+ +RQ+S
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMS 309
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 184 (69.8 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 48/160 (30%), Positives = 84/160 (52%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG +++ D L + +R + I+G V + V +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 81 (33.6 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T TT E+ +P N+IG + G G+N+ +RQ+S
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMS 309
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 220 (82.5 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 83/322 (25%), Positives = 144/322 (44%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS---GTLNTA- 361
TG +++ D L + +R + I+G V + V + + + G + T
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIP 182
Query: 362 -RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT----QGMDHLGLSHSLD 416
+ SS + R D A + H++ HD PPL QG + LD
Sbjct: 183 YQPMPASSPVICAGGQDRCSDAAGYP-HAT----HDLEGPPLDAYSIQGQHTIS---PLD 234
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVP 476
++ Q+ + + G G G++ + T TT E+ +P
Sbjct: 235 LAKLNQVARQQSHFAM-MHG----GTGFAGIDSSSPEVKGYWASLDAS--TQTTHELTIP 287
Query: 477 ENVIGSVYGENGSNLLRLRQVS 498
N+IG + G G+N+ +RQ+S
Sbjct: 288 NNLIGCIIGRQGANINEIRQMS 309
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 220 (82.5 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 83/322 (25%), Positives = 144/322 (44%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS---GTLNTA- 361
TG +++ D L + +R + I+G V + V + + + G + T
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIP 182
Query: 362 -RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT----QGMDHLGLSHSLD 416
+ SS + R D A + H++ HD PPL QG + LD
Sbjct: 183 YQPMPASSPVICAGGQDRCSDAAGYP-HAT----HDLEGPPLDAYSIQGQHTIS---PLD 234
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVP 476
++ Q+ + + G G G++ + T TT E+ +P
Sbjct: 235 LAKLNQVARQQSHFAM-MHG----GTGFAGIDSSSPEVKGYWASLDAS--TQTTHELTIP 287
Query: 477 ENVIGSVYGENGSNLLRLRQVS 498
N+IG + G G+N+ +RQ+S
Sbjct: 288 NNLIGCIIGRQGANINEIRQMS 309
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 220 (82.5 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 83/322 (25%), Positives = 144/322 (44%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS---GTLNTA- 361
TG +++ D L + +R + I+G V + V + + + G + T
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIP 182
Query: 362 -RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT----QGMDHLGLSHSLD 416
+ SS + R D A + H++ HD PPL QG + LD
Sbjct: 183 YQPMPASSPVICAGGQDRCSDAAGYP-HAT----HDLEGPPLDAYSIQGQHTIS---PLD 234
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVP 476
++ Q+ + + G G G++ + T TT E+ +P
Sbjct: 235 LAKLNQVARQQSHFAM-MHG----GTGFAGIDSSSPEVKGYWASLDAS--TQTTHELTIP 287
Query: 477 ENVIGSVYGENGSNLLRLRQVS 498
N+IG + G G+N+ +RQ+S
Sbjct: 288 NNLIGCIIGRQGANINEIRQMS 309
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 220 (82.5 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 83/322 (25%), Positives = 144/322 (44%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS---GTLNTA- 361
TG +++ D L + +R + I+G V + V + + + G + T
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIP 182
Query: 362 -RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT----QGMDHLGLSHSLD 416
+ SS + R D A + H++ HD PPL QG + LD
Sbjct: 183 YQPMPASSPVICAGGQDRCSDAAGYP-HAT----HDLEGPPLDAYSIQGQHTIS---PLD 234
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVP 476
++ Q+ + + G G G++ + T TT E+ +P
Sbjct: 235 LAKLNQVARQQSHFAM-MHG----GTGFAGIDSSSPEVKGYWASLDAS--TQTTHELTIP 287
Query: 477 ENVIGSVYGENGSNLLRLRQVS 498
N+IG + G G+N+ +RQ+S
Sbjct: 288 NNLIGCIIGRQGANINEIRQMS 309
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 219 (82.2 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 56/165 (33%), Positives = 91/165 (55%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVGA+IG+ G I+ + E A I V +R++ ++ E PE+ SP
Sbjct: 76 FRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSP 135
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA-RLVVASNQVGCLLGKGGTIISEMRKV 306
A AV+ VF R + G + D N G + ++ RL+VAS Q L+GK G++I + +
Sbjct: 136 AMDAVLRVFRR-VSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVEN 194
Query: 307 TGTSIRIISDQLLKCISEND-RVVQISGEFSKVKDAVYNVTGRLR 350
+G S+RI+S++ + D R+V + GE K+ A+ + G LR
Sbjct: 195 SGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLR 239
Score = 40 (19.1 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
A VT + + +P + + G G+N+ +R+ S
Sbjct: 336 AFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRRRS 370
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 188 (71.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 62/238 (26%), Positives = 104/238 (43%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + S V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 FKAFSMIALKFEEDINASMTNSTVTSKPP---VTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGV-HSSVAVSHDFSQ--PPLTQ-GMDHLGLSHSLDCPS 419
S+ + + + + H + H + PP T G G LD S
Sbjct: 183 ASAPIIFAGGQA-FTIQGQYAIPHPDLTKLHQLAMQHPPFTPLGQTTPGFPERLDATS 239
Score = 105 (42.0 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 80 (33.2 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ G+ I+E+R+++G I+I + +R V I+G + + A
Sbjct: 246 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAN----ATEGSAERQVTITGSPANISLA 301
Query: 342 VYNVTGR 348
Y + R
Sbjct: 302 QYLINAR 308
Score = 61 (26.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E+ +P ++IG + G GS + +RQ+S
Sbjct: 245 ELTIPNDLIGCIIGRQGSKINEIRQMS 271
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 210 (79.0 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 82/322 (25%), Positives = 144/322 (44%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPLTQGMDHLGLSHSLD 416
R + +SS + YS D ASF H+ S+ ++ D PPL + G +++
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFP-HTTPSMCLNPDLEGPPL-EAYTIQG-QYAIP 239
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVP 476
P KL + H + G+S A T+ E+ +P
Sbjct: 240 QPDLTKLHQL-AMQQSHFPMTHG-NTGFSGIESSSPEVKGYWGLDASA--QTTSHELTIP 295
Query: 477 ENVIGSVYGENGSNLLRLRQVS 498
++IG + G G+ + +RQ+S
Sbjct: 296 NDLIGCIIGRQGAKINEIRQMS 317
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 210 (79.0 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 82/322 (25%), Positives = 144/322 (44%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPLTQGMDHLGLSHSLD 416
R + +SS + YS D ASF H+ S+ ++ D PPL + G +++
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFP-HTTPSMCLNPDLEGPPL-EAYTIQG-QYAIP 239
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVP 476
P KL + H + G+S A T+ E+ +P
Sbjct: 240 QPDLTKLHQL-AMQQSHFPMTHG-NTGFSGIESSSPEVKGYWGLDASA--QTTSHELTIP 295
Query: 477 ENVIGSVYGENGSNLLRLRQVS 498
++IG + G G+ + +RQ+S
Sbjct: 296 NDLIGCIIGRQGAKINEIRQMS 317
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 185 (70.2 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 48/148 (32%), Positives = 77/148 (52%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + S V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 FKAFSMIALKFEEDINASMTNSTVTSKPP---VTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R V ISG
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISG 150
Score = 105 (42.0 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 82 (33.9 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD +S + L + ++ +GC++G+ G+ I+E+R+++G I+I + +
Sbjct: 237 GLDATSPTS---SHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAN----ATEGSAE 289
Query: 327 RVVQISGEFSKVKDAVYNVTGR 348
R V I+G + + A Y + R
Sbjct: 290 RQVTITGSPANISLAQYLINAR 311
Score = 61 (26.5 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E+ +P ++IG + G GS + +RQ+S
Sbjct: 248 ELTIPNDLIGCIIGRQGSKINEIRQMS 274
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 186 (70.5 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 68/251 (27%), Positives = 113/251 (45%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 70
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I EMR
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+ TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 127 ESTGAQVQVAGDMLP---NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPK 183
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT-QGM------DHLGLSHSLDC 417
S+ + + R A+ + S+ + H P T QG D L H L
Sbjct: 184 PASTPVIFSGGQVRADPLAASAANLSLLLQHQ-PLPAYTIQGQYAIPHPDQLTKLHQLAM 242
Query: 418 PSSPKLWTAQT 428
+P QT
Sbjct: 243 QQTPFTPLGQT 253
Score = 106 (42.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 27/98 (27%), Positives = 51/98 (52%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPES 243
I+ ++ GA + V G +P ER +T++ + PE+
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGT--PEA 156
Score = 97 (39.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++ SE R + I+G + + A
Sbjct: 271 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN--AMEGSSE--RQITITGTPANISLA 326
Query: 342 VYNVTGRLRD 351
Y + R RD
Sbjct: 327 QYLINARFRD 336
Score = 61 (26.5 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 267 STHELTIPNDLIGCIIGRQGTKINEIRQMS 296
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 182 (69.1 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 51/183 (27%), Positives = 93/183 (50%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSS 368
+SS
Sbjct: 183 SSS 185
Score = 62 (26.9 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
A T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMS 270
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 201 (75.8 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 63/222 (28%), Positives = 110/222 (49%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPL 402
+SS + YS D ASF H+ S+ ++ D PPL
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFP-HTTPSMCLNPDLEGPPL 223
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 185 (70.2 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 48/148 (32%), Positives = 77/148 (52%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTIT---GPTDAI 67
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + S V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 68 FKAFSMIALKFEEDINASMTNSTVTSKPP---VTLRLVVPASQCGSLIGKGGSKIKEIRE 124
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R V ISG
Sbjct: 125 STGAQVQVAGDMLP---NSTERAVTISG 149
Score = 111 (44.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 36/144 (25%), Positives = 69/144 (47%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ T + V+ R++ + G++IGKGG+
Sbjct: 58 VTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGS 117
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE 265
I+ ++ GA + V G +P ER +T++ + P++ K + +V + E +
Sbjct: 118 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT--PDAIIQ-CVKQICVVMLEVSEHSPP 174
Query: 266 KGLDFSSNKGLLVNARLVVASNQV 289
KG + +A ++ A QV
Sbjct: 175 KGATIPY-RPKPASAPIIFAGGQV 197
Score = 61 (26.5 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E+ +P ++IG + G GS + +RQ+S
Sbjct: 283 ELTIPNDLIGCIIGRQGSKINEIRQMS 309
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 182 (69.1 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 51/183 (27%), Positives = 93/183 (50%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSS 368
+SS
Sbjct: 183 SSS 185
Score = 62 (26.9 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
A T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 249 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMS 283
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 179 (68.1 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 46/148 (31%), Positives = 80/148 (54%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R + I+G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAG 150
Score = 62 (26.9 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
A T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 239 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMS 273
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 179 (68.1 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 46/148 (31%), Positives = 80/148 (54%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R + I+G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAG 150
Score = 62 (26.9 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
A T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 240 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMS 274
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 182 (69.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 51/183 (27%), Positives = 93/183 (50%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSS 368
+SS
Sbjct: 183 SSS 185
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 177 (67.4 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ TG +++ D L + +R V ISG
Sbjct: 125 ESTGAQVQVAGDMLP---NSTERAVTISG 150
Score = 104 (41.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 89 (36.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 246 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 301
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 302 QYLINARL 309
Score = 61 (26.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 242 STHELTIPNDLIGCIIGRQGTKINEIRQMS 271
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 177 (67.4 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 22 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 76
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 77 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 132
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ TG +++ D L + +R V ISG
Sbjct: 133 ESTGAQVQVAGDMLP---NSTERAVTISG 158
Score = 107 (42.7 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 30/118 (25%), Positives = 61/118 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 67 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 126
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQK-AVVLVFSRLIEG 262
I+ ++ GA + V G +P ER +T++ + P++ ++ VV++ + I+G
Sbjct: 127 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT--PDAIIQCVKQICVVMLEAYTIQG 182
Score = 89 (36.4 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 249 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 304
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 305 QYLINARL 312
Score = 61 (26.5 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 245 STHELTIPNDLIGCIIGRQGTKINEIRQMS 274
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 198 (74.8 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 81/322 (25%), Positives = 140/322 (43%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPLTQGMDHLGLSHSLD 416
R + +SS + YS D ASF H+ S+ ++ D PPL + G +++
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFP-HTTPSMCLNPDLEGPPL-EAYTIQG-QYAIP 239
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVP 476
P KL H Q A T+ E+ +P
Sbjct: 240 QPDLTKL---------HQLAMQ-------QSHFPMTHGNTGFSAGLDASAQTTSHELTIP 283
Query: 477 ENVIGSVYGENGSNLLRLRQVS 498
++IG + G G+ + +RQ+S
Sbjct: 284 NDLIGCIIGRQGAKINEIRQMS 305
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 179 (68.1 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 46/148 (31%), Positives = 80/148 (54%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R + I+G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAG 150
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 201 (75.8 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 49/167 (29%), Positives = 88/167 (52%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G +I+ + E A I + P ER + V+ E PES
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
P+ ++ V R+++G G + V+ RL+V ++Q G L+GK G + ++
Sbjct: 246 LPPSMDGLLRVHMRIVDGLD--GEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQ 303
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +R++ + L + ++DRVV++ GE + V A+ + LR
Sbjct: 304 EASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLR 350
Score = 44 (20.5 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+ T ++ +P + +V G +GSN+ R++S
Sbjct: 454 VAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLS 487
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 196 (74.1 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 77/316 (24%), Positives = 135/316 (42%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+ TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 125 ESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 181
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT-QGMDHLGLSHSLDCPSSPKL 423
S+ + R A+ + S+ + H P T QG + H D +L
Sbjct: 182 PASTPVIFAGGQVRADPLAASTANLSLLLQHP-PLPAYTIQGQ--YAIPHP-DLTKLHQL 237
Query: 424 WTAQT-VTGVHLRGSSDVGRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVPENVIGS 482
QT + + G A +T E+ +P ++IG
Sbjct: 238 AMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGC 297
Query: 483 VYGENGSNLLRLRQVS 498
+ G G+ + +RQ+S
Sbjct: 298 IIGRQGTKINEIRQMS 313
Score = 104 (41.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 89 (36.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 343
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 344 QYLINARL 351
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 177 (67.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ TG +++ D L + +R V ISG
Sbjct: 125 ESTGAQVQVAGDMLP---NSTERAVTISG 150
Score = 104 (41.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 89 (36.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 343
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 344 QYLINARL 351
Score = 61 (26.5 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 284 STHELTIPNDLIGCIIGRQGTKINEIRQMS 313
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 176 (67.0 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 48/148 (32%), Positives = 75/148 (50%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+ A I+V C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG--NCPERIVTIT---GPTDAI 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + F I + S V RLVV ++Q G L+GKGG+ I EMR+
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSQATSKPP---VTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R V ISG
Sbjct: 128 STGAQVQVAGDMLP---NSTERAVTISG 152
Score = 106 (42.4 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 27/98 (27%), Positives = 51/98 (52%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPES 243
I+ ++ GA + V G +P ER +T++ + PE+
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGT--PEA 156
Score = 103 (41.3 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
G+D SS L + ++ +GC++G+ GT I+E+R+++G I+I + +D
Sbjct: 259 GVDASSQAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSD 311
Query: 327 RVVQISGEFSKVKDAVYNVTGRLRD 351
R + I+G + + A Y + R RD
Sbjct: 312 RQITITGTPANISLAQYLINARFRD 336
Score = 61 (26.5 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 267 STHELTIPNDLIGCIIGRQGTKINEIRQMS 296
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 176 (67.0 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 45/148 (30%), Positives = 80/148 (54%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R + I+G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAG 150
Score = 98 (39.6 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
G+D S+ G + L + ++ +GC++G+ G I+E+R+++G I+I + +D
Sbjct: 233 GMDASAQTG---SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSSD 285
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 286 RQVTITGSPASISLAEYLINARL 308
Score = 98 (39.6 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 27/94 (28%), Positives = 50/94 (53%)
Query: 149 VLTTA-PSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGG 205
++T A P+++I ++ LE D +++ T + V+ RI+ + G++IGKGG
Sbjct: 58 IITLAGPTTAIFKAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGG 117
Query: 206 TIIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER IT+ +
Sbjct: 118 CKIKEIRESTGAQVQVAGDMLPNSTERAITIAGT 151
Score = 58 (25.5 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E+ +P ++IG + G G+ + +RQ+S
Sbjct: 244 ELTIPNDLIGCIIGRQGAKINEIRQMS 270
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 177 (67.4 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ TG +++ D L + +R V ISG
Sbjct: 157 ESTGAQVQVAGDMLP---NSTERAVTISG 182
Score = 104 (41.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 297 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 352
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 353 QYLINARL 360
Score = 61 (26.5 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 293 STHELTIPNDLIGCIIGRQGTKINEIRQMS 322
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 177 (67.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ TG +++ D L + +R V ISG
Sbjct: 157 ESTGAQVQVAGDMLP---NSTERAVTISG 182
Score = 104 (41.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 353
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 354 QYLINARL 361
Score = 61 (26.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 294 STHELTIPNDLIGCIIGRQGTKINEIRQMS 323
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 177 (67.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ TG +++ D L + +R V ISG
Sbjct: 157 ESTGAQVQVAGDMLP---NSTERAVTISG 182
Score = 104 (41.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 353
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 354 QYLINARL 361
Score = 61 (26.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 294 STHELTIPNDLIGCIIGRQGTKINEIRQMS 323
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 177 (67.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ TG +++ D L + +R V ISG
Sbjct: 157 ESTGAQVQVAGDMLP---NSTERAVTISG 182
Score = 104 (41.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 353
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 354 QYLINARL 361
Score = 61 (26.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 294 STHELTIPNDLIGCIIGRQGTKINEIRQMS 323
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 177 (67.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSR-LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A + F +I S +++K V RLVV ++Q G L+GKGG+ I E+R
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSP---ATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ TG +++ D L + +R V ISG
Sbjct: 157 ESTGAQVQVAGDMLP---NSTERAVTISG 182
Score = 104 (41.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 353
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 354 QYLINARL 361
Score = 61 (26.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 294 STHELTIPNDLIGCIIGRQGTKINEIRQMS 323
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 169 (64.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 44/138 (31%), Positives = 75/138 (54%)
Query: 196 KVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
+VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP + KA ++
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAIF---KAFAMI 56
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+L E S + ++ V RLVV ++Q G L+GKGG I E+R+ TG +++
Sbjct: 57 IDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 116
Query: 316 DQLLKCISENDRVVQISG 333
D L + +R + I+G
Sbjct: 117 DMLP---NSTERAITIAG 131
Score = 98 (39.6 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 33/124 (26%), Positives = 63/124 (50%)
Query: 149 VLTTA-PSSSISYVSAVRPLSLESDRVATLDART--QQQEVSFRILCSNDKVGAVIGKGG 205
++T A P+++I A+ LE D +++ T + V+ R++ + G++IGKGG
Sbjct: 39 IITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGG 98
Query: 206 TIIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264
I+ ++ GA + V G +P ER IT+ P+S ++ V++ L + +
Sbjct: 99 CKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI--PQSIIECVKQICVVMLETLSQ-SP 155
Query: 265 EKGL 268
KG+
Sbjct: 156 PKGV 159
Score = 92 (37.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ + L + ++ +GC++G+ G I+E+R+++G I+I + D
Sbjct: 216 GLDASAQT---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTD 268
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 269 RQVTITGSAASISLAQYLINVRL 291
Score = 62 (26.9 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
A T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 219 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMS 253
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 190 (71.9 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 65/236 (27%), Positives = 111/236 (47%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEVISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + D G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLDPPSKGVTIPYRPKP 182
Query: 366 TSSVL-----TETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
+SS + T Y+ + P +H F P+T G + G S SLD
Sbjct: 183 SSSPVIFAGGTIQGQYA-IPQPDLTKLHQLAMQQSHF---PMTHG--NTGFSGSLD 232
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 171 (65.3 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 45/148 (30%), Positives = 79/148 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA IS+ C ER+IT+ GP +
Sbjct: 4 LTIRLLMHGKEVGSIIGKDGESVKKMRKESGARISISEG--NCPERIITLA---GPTNF- 57
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
K+ ++ +L E S + ++ V LVV ++Q G L+GKGG I E+R+
Sbjct: 58 ----KSFAMIIDKLEEDISSSMTNSTAASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRE 113
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R + I+G
Sbjct: 114 STGVQVQVAGDMLP---NSTERAITIAG 138
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 167 (63.8 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 47/148 (31%), Positives = 78/148 (52%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G + + ++GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + F I T+ +++K V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 FKAFAMIAYKFEEDI--TNSMSNSTATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R V ISG
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISG 150
Score = 102 (41.0 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 89 (36.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 321
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 322 QYLINARL 329
Score = 61 (26.5 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+T E+ +P ++IG + G G+ + +RQ+S
Sbjct: 262 STHELTIPNDLIGCIIGRQGTKINEIRQMS 291
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 165 (63.1 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 59/230 (25%), Positives = 109/230 (47%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+ A I++ C ER+IT+T + E +
Sbjct: 27 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITITGAT--ECVF 82
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+A ++ +L E + + + V RLV+ ++Q G L+GKGG+ I E+R+
Sbjct: 83 ----RAFTMITIKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIRE 138
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG-TLNTARTR 364
TG +++ D LL + +R V ISG + V + + ++ G T+ +
Sbjct: 139 KTGAQVQVAGD-LLP--NSTERGVTISGSQDAIIQCVKLICTVILESPPKGATIPYRPSP 195
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
+ +VL + + AS + S D Q Q + G+ HS
Sbjct: 196 APGAVLLAGNQVFETSEFASHPLFSVAQGGLDLQQAYTVQ--NQYGIPHS 243
Score = 107 (42.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 44/157 (28%), Positives = 76/157 (48%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
G++ SS + L++ ++ +G ++G+ GT I+E+R+V+G I+I S QL S +D
Sbjct: 272 GIESSSQTA---SQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGS-QL---DSTSD 324
Query: 327 RVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFG 386
R V I+G + A Y +T L +TA++ S S+ + +++ PAS
Sbjct: 325 RHVTITGSPISINLAQYLITSCLET-----AKSTAQSSSMSTPVDLNMSFTQTAPPASSS 379
Query: 387 VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+++A P+ L LS L S P L
Sbjct: 380 A-AALAAMGGLPHAPILGAPYTLPLSSLLGIKSVPFL 415
Score = 99 (39.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 167 LSLESDRVATLDAR---TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-G 222
+ LE D +A L A T + V+ R++ + G++IGKGG+ I+ ++ + GA + V G
Sbjct: 90 IKLEED-LAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAG 148
Query: 223 ATMPECDERLITVTASE 239
+P ER +T++ S+
Sbjct: 149 DLLPNSTERGVTISGSQ 165
Score = 69 (29.3 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E+++P ++IGS+ G G+ + +RQVS
Sbjct: 283 ELLIPNDLIGSIIGRQGTKINEIRQVS 309
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 190 (71.9 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 74/316 (23%), Positives = 141/316 (44%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ C ER++TV+ +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGTTN----- 76
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A+ F+ LI E+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 77 -----AIFSAFT-LITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 130
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G T R
Sbjct: 131 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGA--TIPYRP 185
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
V T P L + +F + + AV + + ++ PL + LGL+ ++ S+ +
Sbjct: 186 KPQV---TGPVI-LANGQAFTIQGNYAVPTQEVAKNPLAS-LAALGLA-GMNPASTGGIN 239
Query: 425 TAQTVTGVHLRGSSDV--GRGWSQXXXXXXXXXXXXXXXXXAIVTNTTVEIIVPENVIGS 482
++ R +D G + E+ V ++IG
Sbjct: 240 HTGELSASAARCQTDFQSNLGSAPAALAALAGSQLRTANPANRAQQQQHEMTVSNDLIGC 299
Query: 483 VYGENGSNLLRLRQVS 498
+ G+ G+ + +RQ+S
Sbjct: 300 IIGKGGTKIAEIRQIS 315
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
+N+ + V+++ +GC++GKGGT I+E+R+++G IRI + + + DR + I
Sbjct: 280 ANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREG-GNTDRTITI 338
Query: 332 SGEFSKVKDAVY 343
SG V A Y
Sbjct: 339 SGNPDSVALAQY 350
Score = 79 (32.9 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM-PECDERLITVTAS 238
++ R++ + G++IGK G+ I+ ++ G I V + M P ER +T++ S
Sbjct: 102 QIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGS 156
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 167 (63.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 46/147 (31%), Positives = 77/147 (52%)
Query: 221 VGATMPECDERLITVTASEGPESRYS--------PAQKAVVLVFSRLIEGTSEKGLDFSS 272
V +P CDER++T+ ++ +R PA A+ V ++ + D++
Sbjct: 3 VNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDYND 62
Query: 273 N----KG-LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCIS--EN 325
N +G +V R++V S+Q+G L+GKGG II +R T IR+ +D L C +
Sbjct: 63 NDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCALALSH 122
Query: 326 DRVVQISGEFSKVKDAVYNVTGRLRDN 352
D ++QI G+ S V++A+Y V L +N
Sbjct: 123 DELLQIIGDPSAVREALYQVAFLLYNN 149
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 166 (63.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 53/207 (25%), Positives = 101/207 (48%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESR 244
++ R+L +VG++IGK G ++ ++ E+GA I++ + PE R++T+T + E
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSSPE---RIVTITGAS--EVI 71
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ KA ++ + E ++ + V RLV ++Q G L+GKGG+ I E+R
Sbjct: 72 F----KAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIR 127
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+ TG +++ D LL +R V ISG + V ++ + ++ G R +
Sbjct: 128 ESTGAQVQVAGD-LLP--DSTERAVTISGTPHAITQCVKHICTVMLESPPKGATIPYRPK 184
Query: 365 STS----SVLTETSPYSRLKDPASFGV 387
++ +VLT+ + P F +
Sbjct: 185 PSAGGGHTVLTQPHAATAFAIPGQFAI 211
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 158 (60.7 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 46/157 (29%), Positives = 81/157 (51%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D LL + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGD-LLP--NSTERAVTVSG----VPDAI 159
Score = 65 (27.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E +VP ++IG V G GS + +RQ+S
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMS 271
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 161 (61.7 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D LL + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGD-LLP--NSTERAVTVSG----VPDAI 159
Score = 65 (27.9 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E +VP ++IG V G GS + +RQ+S
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMS 271
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 161 (61.7 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D LL + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGD-LLP--NSTERAVTVSG----VPDAI 159
Score = 65 (27.9 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E +VP ++IG V G GS + +RQ+S
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMS 271
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 160 (61.4 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 65/252 (25%), Positives = 113/252 (44%)
Query: 154 PSSSISYVSAVRPLSLESDRVATLDARTQQQ-EVSFRILCSNDKVGAVIGKGGTIIRALQ 212
P S + S RPL + V T + T ++ E ++L + G++IGKGG I LQ
Sbjct: 62 PMESEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQ 121
Query: 213 SEAGAFISVGATM---PECDERLITVTAS-EGPESRYSPAQKAVVLVFSRLIEGTSEKGL 268
E GA I + + P ER+ V + E + +S + V + + + L
Sbjct: 122 KETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNIL 181
Query: 269 D--FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
+ N A+L+V ++ G ++GKGG + + + +G +++ Q + I+ +
Sbjct: 182 QPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQE 239
Query: 327 RVVQISGEFSKVKDAVYNVTGRLR-DNHFSGTLNTARTRSTSSVLTET---SPYSRLKD- 381
RVV +SGE +V AV + +++ D S LN + V SPY+ D
Sbjct: 240 RVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADV 299
Query: 382 -PASFGVHSSVA 392
PA+ ++ A
Sbjct: 300 LPAAAAASAAAA 311
Score = 69 (29.3 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 471 VEIAVPENLVGAILGKGGKTLVEYQELT 498
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 160 (61.4 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 53/182 (29%), Positives = 94/182 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 21 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 77
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 78 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 128
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF--SKVKD-AVYNVTGRLRDNHFSGT 357
E++ +T + + DQ EN+ V V+I G F S+ K + Y++T + + + +
Sbjct: 129 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHFFASQAKQCSEYHITQKEQKRNTQTS 185
Query: 358 LN 359
LN
Sbjct: 186 LN 187
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 158 (60.7 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 63/244 (25%), Positives = 110/244 (45%)
Query: 162 SAVRPLSLESDRVATLDARTQQQ-EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
S RPL + V T + T ++ E ++L + G++IGKGG I LQ E GA I
Sbjct: 8 SRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 67
Query: 221 VGATM---PECDERLITVTAS-EGPESRYSPAQKAVVLVFSRLIEGTSEKGLD--FSSNK 274
+ + P ER+ V + E + +S + V + + + L + N
Sbjct: 68 LSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNP 127
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
A+L+V ++ G ++GKGG + + + +G +++ Q + I+ +RVV +SGE
Sbjct: 128 DRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVTVSGE 185
Query: 335 FSKVKDAVYNVTGRLR-DNHFSGTLNTARTRSTSSVLTET---SPYSRLKD--PASFGVH 388
+V AV + +++ D S LN + V SPY+ D PA+
Sbjct: 186 PEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAAS 245
Query: 389 SSVA 392
++ A
Sbjct: 246 AAAA 249
Score = 69 (29.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 409 VEIAVPENLVGAILGKGGKTLVEYQELT 436
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 158 (60.7 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 61/228 (26%), Positives = 108/228 (47%)
Query: 162 SAVRPLSLESDRVATLDARTQQQ-EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
S RPL ++ +T + T ++ E ++L + G++IGKGG I LQ E GA I
Sbjct: 32 SRKRPLETPTEASSTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 91
Query: 221 VGATM---PECDER--LI--TVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273
+ + P ER LI TV A G + + + + S+ E S + N
Sbjct: 92 LSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVREMPQS-SQKTEPVSILQPQTTVN 150
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
+ A+L+V ++ G ++GKGG + + + +G +++ Q + I+ +RVV +SG
Sbjct: 151 PDRIKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVTVSG 208
Query: 334 EFSKVKDAVYNVTGRLR-DNHFSGTLNTARTRSTSSVLTET---SPYS 377
E + + AV + +++ D S LN + + T V SP++
Sbjct: 209 EPEQNRKAVEIIVQKIQEDPQSSSCLNISYSNITGPVANSNPTGSPFA 256
Score = 95 (38.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 50/235 (21%), Positives = 103/235 (43%)
Query: 53 RPLDTISH-ETIRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFAPESS 111
RPL+T + + +RS + + + +P + G Q I++ E A
Sbjct: 35 RPLETPTEASSTKRSNTGEEGEYFLKVL--IPSYAAGSIIGKGGQTIVQLQKETGATIKL 92
Query: 112 HRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLES 171
+S + T+ + E L +H + ++++ + P SS P+S+
Sbjct: 93 SKSKDFYPGTTERVCLIQGTVEALNGVH-NFIAEK---VREMPQSS----QKTEPVSILQ 144
Query: 172 DRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE---C 228
+ R +Q +++ N G +IGKGG ++A+ ++GA++ + + PE
Sbjct: 145 PQTTVNPDRIKQA----KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL-SQKPEGINL 199
Query: 229 DERLITVTASEGPESRYSPAQKAVVLVFSRLIE---GTSEKGLDFSSNKGLLVNA 280
ER++TV+ PE +KAV ++ ++ E +S + +S+ G + N+
Sbjct: 200 QERVVTVSGE--PEQN----RKAVEIIVQKIQEDPQSSSCLNISYSNITGPVANS 248
Score = 80 (33.2 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V N VG +LGKGG + E +++TG I+I S + +R V I+G + + A
Sbjct: 414 IAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFIPGTRNRKVTITGSPAATQAA 472
Query: 342 VYNVTGRL 349
Y ++ R+
Sbjct: 473 QYLISQRI 480
Score = 69 (29.3 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 412 VEIAVPENLVGAILGKGGKTLVEYQELT 439
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 158 (60.7 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 46/157 (29%), Positives = 81/157 (51%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D LL + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGD-LLP--NSTERAVTVSG----VPDAI 159
Score = 65 (27.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E +VP ++IG V G GS + +RQ+S
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMS 271
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 158 (60.7 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 46/157 (29%), Positives = 81/157 (51%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D LL + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGD-LLP--NSTERAVTVSG----VPDAI 159
Score = 65 (27.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E +VP ++IG V G GS + +RQ+S
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMS 271
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 158 (60.7 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 46/157 (29%), Positives = 81/157 (51%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D LL + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGD-LLP--NSTERAVTVSG----VPDAI 159
Score = 65 (27.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E +VP ++IG V G GS + +RQ+S
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMS 271
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 158 (60.7 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 46/157 (29%), Positives = 81/157 (51%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D LL + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGD-LLP--NSTERAVTVSG----VPDAI 159
Score = 65 (27.9 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E +VP ++IG V G GS + +RQ+S
Sbjct: 246 EFLVPNDLIGCVIGRQGSKISEIRQMS 272
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 158 (60.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 46/157 (29%), Positives = 81/157 (51%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D LL + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGD-LLP--NSTERAVTVSG----VPDAI 159
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 170 (64.9 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 50/181 (27%), Positives = 92/181 (50%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 38 DEEYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 97
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQVGCLLGKG 296
G E KA +V L+EG G+ SN G +L+++ NQ+G ++G+
Sbjct: 98 --GCEG----ISKAYAVVARALLEGAPSMGMGGVVSNNGTHP-IKLLISHNQMGTIIGRQ 150
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++ V+G +R+++ + + S +RVV++ G ++ AV+ + L D+ G
Sbjct: 151 GLKIKHIQDVSG--VRMVAQKEMLPQS-TERVVEVQGTPEGIQRAVWEICKCLIDDWQRG 207
Query: 357 T 357
T
Sbjct: 208 T 208
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 150 (57.9 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 41/132 (31%), Positives = 69/132 (52%)
Query: 202 GKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
GK G ++ ++ E+GA I++ C ER+IT+ GP + KA ++ +L E
Sbjct: 22 GKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAIF---KAFAMIIDKLEE 73
Query: 262 GTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKC 321
S + ++ V RLVV ++Q G L+GKGG I E+R+ TG +++ D L
Sbjct: 74 DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP-- 131
Query: 322 ISENDRVVQISG 333
+ +R + I+G
Sbjct: 132 -NSTERAITIAG 142
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 149 (57.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 39/120 (32%), Positives = 66/120 (55%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 11 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 65
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 66 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 122
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 170 (64.9 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 47/176 (26%), Positives = 90/176 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT +
Sbjct: 224 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGA---- 279
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
S +A LV L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 280 --LSGTARAYALVAKGLLEGAPQMGMGGIVSNNGTHP-IRLLISHNQMGTIIGRQGLKIK 336
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 337 HIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGT 389
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 145 (56.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 57/226 (25%), Positives = 102/226 (45%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITV 235
A ++ E ++L + G++IGKGG I LQ E GA I + + P ER+ V
Sbjct: 36 APAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLV 95
Query: 236 TAS-EGPESRYSPAQKAVVLVFSRLIEGTSEKGLD--FSSNKGLLVNARLVVASNQVGCL 292
+ E + +S + V + + + L + N A+L+V ++ G +
Sbjct: 96 QGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLI 155
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR-D 351
+GKGG + + + +G +++ Q + I+ +RVV +SGE +V AV + +++ D
Sbjct: 156 IGKGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQED 213
Query: 352 NHFSGTLNTARTRSTSSVLTET---SPYSRLKD--PASFGVHSSVA 392
S LN + V SPY+ D PA+ ++ A
Sbjct: 214 PQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAA 259
Score = 69 (29.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 419 VEIAVPENLVGAILGKGGKTLVEYQELT 446
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 143 (55.4 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 58/225 (25%), Positives = 105/225 (46%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTAS 238
++ E ++L + G++IGKGG I LQ E GA I + + P ER+ + +
Sbjct: 59 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 118
Query: 239 -EGPESRYS-PAQKAVVLVFS-RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
E + + A+K + S + E S + N + A+LVV ++ G ++GK
Sbjct: 119 VEALNNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLVVPNSTAGLIIGK 178
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR-DNHF 354
GG + + + +G +++ Q I+ +RVV ISGE + + AV + +++ D
Sbjct: 179 GGATVKAVMEQSGAWVQL--SQKPDGINLQERVVTISGEPEQNRKAVEIIVQKIQEDPQS 236
Query: 355 SGTLNTARTRSTSSVLTET---SPYSRLKD--PASFGVHSSVAVS 394
S LN + + + V SPY+ + PA+ ++ A S
Sbjct: 237 SSCLNISYSNISGPVANSNPTGSPYANSAEVMPAAAAAAAATASS 281
Score = 93 (37.8 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 42/205 (20%), Positives = 91/205 (44%)
Query: 82 VPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVD 141
+P + G Q I++ E A +S + T+ + E L ++H D
Sbjct: 69 IPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNNVH-D 127
Query: 142 ILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVI 201
++++ + P S+ P+S+ + R +Q +++ N G +I
Sbjct: 128 FIAEK---VREMPQSA----QKTEPVSILQPQTTVNPDRVKQA----KLVVPNSTAGLII 176
Query: 202 GKGGTIIRALQSEAGAFISVGATMPE---CDERLITVTASEGPESRYSPAQKAVVLVFSR 258
GKGG ++A+ ++GA++ + + P+ ER++T++ PE +KAV ++ +
Sbjct: 177 GKGGATVKAVMEQSGAWVQL-SQKPDGINLQERVVTISGE--PEQN----RKAVEIIVQK 229
Query: 259 LIE---GTSEKGLDFSSNKGLLVNA 280
+ E +S + +S+ G + N+
Sbjct: 230 IQEDPQSSSCLNISYSNISGPVANS 254
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRI 313
+ V N VG +LGKGG + E +++TG I+I
Sbjct: 421 IAVPENLVGAILGKGGKTLVEYQELTGARIQI 452
Score = 69 (29.3 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 419 VEIAVPENLVGAILGKGGKTLVEYQELT 446
Score = 39 (18.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 91 LESGPQEILRRPLEVFAPESS 111
+ES P + +RPLE SS
Sbjct: 10 MESDPPDSRKRPLETPTEASS 30
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 150 (57.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 51/189 (26%), Positives = 91/189 (48%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLIT 234
+A + ++ R L SN G+VIGKGG+ I Q+++GA I + P +R+I
Sbjct: 27 EADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIM 86
Query: 235 VTASEGPESRYSPAQKAVVLVFSRL-IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
++ S + L+ +L E +E G + + + RLVV ++ G ++
Sbjct: 87 ISGS------IKEVVNGLELILDKLHSELHAEDGNEVEPRRRI----RLVVPNSSCGGII 136
Query: 294 GKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RD 351
GKGG I + + I+I D +S DR+V +SG F + A+ + +L D
Sbjct: 137 GKGGATIKSFIEESKAGIKISPLDNTFYGLS--DRLVTLSGTFEEQMRAIDLILAKLTED 194
Query: 352 NHFSGTLNT 360
+H+S +++
Sbjct: 195 DHYSQNVHS 203
Score = 56 (24.8 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+TTV I V + IG V G G N++ + Q++
Sbjct: 254 STTVTIGVADEHIGLVLGRGGRNIMEITQMT 284
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 143 (55.4 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 56/223 (25%), Positives = 101/223 (45%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTAS 238
++ E ++L + G++IGKGG I LQ E GA I + + P ER+ V +
Sbjct: 1 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGT 60
Query: 239 -EGPESRYSPAQKAVVLVFSRLIEGTSEKGLD--FSSNKGLLVNARLVVASNQVGCLLGK 295
E + +S + V + + + L + N A+L+V ++ G ++GK
Sbjct: 61 AEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGK 120
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR-DNHF 354
GG + + + +G +++ Q + I+ +RVV +SGE +V AV + +++ D
Sbjct: 121 GGATVKAVMEQSGAWVQL--SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQS 178
Query: 355 SGTLNTARTRSTSSVLTET---SPYSRLKD--PASFGVHSSVA 392
S LN + V SPY+ D PA+ ++ A
Sbjct: 179 SSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAA 221
Score = 69 (29.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 381 VEIAVPENLVGAILGKGGKTLVEYQELT 408
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 143 (55.4 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 60/244 (24%), Positives = 109/244 (44%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGK 203
Q+N T P S RPL + +T T + F ++L + G++IGK
Sbjct: 7 QQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGK 66
Query: 204 GGTIIRALQSEAGAFISVGATM---PECDERLITVTAS-EGPESRYS-PAQKAVVLVFS- 257
GG I LQ E GA I + + P ER+ + + E + + A+K + +
Sbjct: 67 GGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNV 126
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
E S + N + +++V ++ G ++GKGG + + + +G +++ Q
Sbjct: 127 AKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQ 184
Query: 318 LLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET--- 373
I+ +RVV +SGE + + AV + +++++ SG+ LN + T V
Sbjct: 185 KPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTG 244
Query: 374 SPYS 377
SPY+
Sbjct: 245 SPYA 248
Score = 69 (29.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 399 VEIAVPENLVGAILGKGGKTLVEYQELT 426
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 144 (55.7 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 57/225 (25%), Positives = 101/225 (44%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVT 236
R + E ++L + G++IGKGG I LQ E GA I + + P ER+ V
Sbjct: 51 RGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQ 110
Query: 237 AS-EGPESRYSPAQKAVVLVFSRLIEGTSEKGLD--FSSNKGLLVNARLVVASNQVGCLL 293
+ E + +S + V + + + L + N A+L+V ++ G ++
Sbjct: 111 GTAEALNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLII 170
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR-DN 352
GKGG + + + +G +++ Q + I+ +RVV +SGE +V AV + +++ D
Sbjct: 171 GKGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDP 228
Query: 353 HFSGTLNTARTRSTSSVLTET---SPYSRLKD--PASFGVHSSVA 392
S LN + V SPY+ D PA+ ++ A
Sbjct: 229 QSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAA 273
Score = 69 (29.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 433 VEIAVPENLVGAILGKGGKTLVEYQELT 460
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 143 (55.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 60/244 (24%), Positives = 109/244 (44%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGK 203
Q+N T P S RPL + +T T + F ++L + G++IGK
Sbjct: 8 QQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGK 67
Query: 204 GGTIIRALQSEAGAFISVGATM---PECDERLITVTAS-EGPESRYS-PAQKAVVLVFS- 257
GG I LQ E GA I + + P ER+ + + E + + A+K + +
Sbjct: 68 GGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNV 127
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
E S + N + +++V ++ G ++GKGG + + + +G +++ Q
Sbjct: 128 AKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQ 185
Query: 318 LLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET--- 373
I+ +RVV +SGE + + AV + +++++ SG+ LN + T V
Sbjct: 186 KPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTG 245
Query: 374 SPYS 377
SPY+
Sbjct: 246 SPYA 249
Score = 69 (29.3 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 400 VEIAVPENLVGAILGKGGKTLVEYQELT 427
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 145 (56.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 57/226 (25%), Positives = 100/226 (44%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
V RLVV ++Q G L+GKGG I E+R+ TG +++ D L + +R + I+G
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP---NSTERAITIAGIPQS 115
Query: 338 VKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSP---YSRLKDPASFGVHS--SVA 392
+ + V + + ++ G R + +SS + YS D ASF H+ S+
Sbjct: 116 IIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFP-HTTPSMC 174
Query: 393 VSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXXXXXX 452
++ D PPL + G +++ P KL + H + G+S
Sbjct: 175 LNPDLEGPPL-EAYTIQG-QYAIPQPDLTKLHQL-AMQQSHFPMTHG-NTGFSGIESSSP 230
Query: 453 XXXXXXXXXXXAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+ T T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 231 EVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMS 275
Score = 92 (37.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ + L + ++ +GC++G+ G I+E+R+++G I+I + D
Sbjct: 238 GLDASAQT---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTD 290
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 291 RQVTITGSAASISLAQYLINVRL 313
Score = 84 (34.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITV 235
V+ R++ + G++IGKGG I+ ++ GA + V G +P ER IT+
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 109
Score = 60 (26.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSE---AGAFISVGATMPECDERLITVTASE 239
++ R+L +VG++IGK G ++ ++ E + S A+ P RL+ V AS+
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREEDISSSMTNSTAASRPPVTLRLV-VPASQ 69
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 164 (62.8 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 54/185 (29%), Positives = 93/185 (50%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G I+ ++ E+GA I++ C ER++T+T + G
Sbjct: 72 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTLGVIG-- 127
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA +V ++ E L S K + R++V + Q G L+GKGG+ I ++R+
Sbjct: 128 ----KAFNMVCNKFEEDMLL--LPNSVPKPP-ITMRVIVPATQCGSLIGKGGSKIKDIRE 180
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L +R V +SG + + V L + G+ T R +
Sbjct: 181 ATGASIQVASEMLPH---STERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITYRPKP 237
Query: 366 TSSVL 370
T + L
Sbjct: 238 TFNPL 242
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 138 (53.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 57/233 (24%), Positives = 105/233 (45%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGK 203
Q+N T P S RPL + +T T + F ++L + G++IGK
Sbjct: 7 QQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGK 66
Query: 204 GGTIIRALQSEAGAFISVGATM---PECDERLITVTAS-EGPESRYS-PAQKAVVLVFS- 257
GG I LQ E GA I + + P ER+ + + E + + A+K + +
Sbjct: 67 GGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNV 126
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
E S + N + +++V ++ G ++GKGG + + + +G +++ Q
Sbjct: 127 AKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQ 184
Query: 318 LLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT-LNTARTRSTSSV 369
I+ +RVV +SGE + + AV + +++++ SG+ LN + T V
Sbjct: 185 KPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPV 237
Score = 69 (29.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 399 VEIAVPENLVGAILGKGGKTLVEYQELT 426
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 163 (62.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ +R++ +T P
Sbjct: 432 EQEVVY-LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGP--P 488
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F++ + + + + V S+ G ++GKGG ++
Sbjct: 489 EAQF----KAQGRIFGKL----KEENF-FTAKEEVKLETHIKVPSSAAGRVIGKGGKTVN 539
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF-------SKVKDAVYNVTGRLRDNH 353
E++ +T + + DQ END V V+ISG F K+++ + V + H
Sbjct: 540 ELQNLTSAEVIVPRDQTP---DENDEVFVKISGHFFASQTAQRKIREIIQQVKQQ-EQKH 595
Query: 354 FSGTLNTARTR 364
G T R++
Sbjct: 596 QQGAPTTPRSK 606
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 145 (56.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 58/218 (26%), Positives = 107/218 (49%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS-E--GPE-SRYSPA-QKAVVL----VFSRL-I 260
+++ A +SV ++ PE R+++++A E G + P ++ + L S+L +
Sbjct: 69 RTDYNASVSVPDSSGPE---RILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPL 125
Query: 261 EGTSEKGLDFSSNKGLLVNA--RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQL 318
E + + L++ KG + RL++ + G ++G G I E+R+ T T+I++ +
Sbjct: 126 ESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC- 184
Query: 319 LKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
C DRVV I G+ +V + + + + ++ G
Sbjct: 185 --CPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKG 220
Score = 56 (24.8 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 417
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 107 (42.7 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 33/147 (22%), Positives = 74/147 (50%)
Query: 119 SIETQHRLFGAVSQEILPDLHVDIL-SQRNSVLTTAPSSSISYVSAVRPLSLESDRVATL 177
+IE + + G ++++I ++ ++ ++ S+L + + + P S + + +
Sbjct: 105 TIEALNAVHGFIAEKIR-EMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPS 163
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE---CDERLIT 234
D T + +I+ N G +IGKGG ++A+ ++GA++ + + P+ ER++T
Sbjct: 164 DPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL-SQKPDGINLQERVVT 222
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIE 261
V+ PE +KAV L+ ++ E
Sbjct: 223 VSGE--PEQN----RKAVELIIQKIQE 243
Score = 94 (38.1 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 232
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 233 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 273
Score = 84 (34.6 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 410 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 463
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 464 VPGTRN-RKVTITGTPAATQAAQYLITQRI 492
Score = 82 (33.9 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 28/95 (29%), Positives = 41/95 (43%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGK 203
Q+N T P S RPL + +T T + F ++L + G++IGK
Sbjct: 8 QQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGK 67
Query: 204 GGTIIRALQSEAGAFISVGATM---PECDERLITV 235
GG I LQ E GA I + + P ER+ +
Sbjct: 68 GGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 102
Score = 69 (29.3 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELT 451
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 71 PHDTIARPVEAVPQ 84
P D+ RP+EA P+
Sbjct: 22 PPDSRKRPLEAPPE 35
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 107 (42.7 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 33/147 (22%), Positives = 74/147 (50%)
Query: 119 SIETQHRLFGAVSQEILPDLHVDIL-SQRNSVLTTAPSSSISYVSAVRPLSLESDRVATL 177
+IE + + G ++++I ++ ++ ++ S+L + + + P S + + +
Sbjct: 105 TIEALNAVHGFIAEKIR-EMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPS 163
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE---CDERLIT 234
D T + +I+ N G +IGKGG ++A+ ++GA++ + + P+ ER++T
Sbjct: 164 DPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL-SQKPDGINLQERVVT 222
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIE 261
V+ PE +KAV L+ ++ E
Sbjct: 223 VSGE--PEQN----RKAVELIIQKIQE 243
Score = 94 (38.1 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 232
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 233 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 273
Score = 84 (34.6 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 410 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 463
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 464 VPGTRN-RKVTITGTPAATQAAQYLITQRI 492
Score = 82 (33.9 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 28/95 (29%), Positives = 41/95 (43%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGK 203
Q+N T P S RPL + +T T + F ++L + G++IGK
Sbjct: 8 QQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGK 67
Query: 204 GGTIIRALQSEAGAFISVGATM---PECDERLITV 235
GG I LQ E GA I + + P ER+ +
Sbjct: 68 GGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 102
Score = 69 (29.3 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELT 451
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 71 PHDTIARPVEAVPQ 84
P D+ RP+EA P+
Sbjct: 22 PPDSRKRPLEAPPE 35
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 106 (42.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 32/147 (21%), Positives = 74/147 (50%)
Query: 119 SIETQHRLFGAVSQEILPDLHVDIL-SQRNSVLTTAPSSSISYVSAVRPLSLESDRVATL 177
++E + + G ++++I ++ ++ ++ S+L + + + P S + + +
Sbjct: 105 TVEALNAVHGFIAEKIR-EMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPS 163
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE---CDERLIT 234
D T + +I+ N G +IGKGG ++A+ ++GA++ + + P+ ER++T
Sbjct: 164 DPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL-SQKPDGINLQERVVT 222
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIE 261
V+ PE +KAV L+ ++ E
Sbjct: 223 VSGE--PEQN----RKAVELIIQKIQE 243
Score = 94 (38.1 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 232
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 233 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 273
Score = 84 (34.6 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 410 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 463
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 464 VPGTRN-RKVTITGTPAATQAAQYLITQRI 492
Score = 82 (33.9 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 28/95 (29%), Positives = 41/95 (43%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGK 203
Q+N T P S RPL + +T T + F ++L + G++IGK
Sbjct: 8 QQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGK 67
Query: 204 GGTIIRALQSEAGAFISVGATM---PECDERLITV 235
GG I LQ E GA I + + P ER+ +
Sbjct: 68 GGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 102
Score = 69 (29.3 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELT 451
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 71 PHDTIARPVEAVPQ 84
P D+ RP+EA P+
Sbjct: 22 PPDSRKRPLEAPPE 35
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 106 (42.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 32/147 (21%), Positives = 74/147 (50%)
Query: 119 SIETQHRLFGAVSQEILPDLHVDIL-SQRNSVLTTAPSSSISYVSAVRPLSLESDRVATL 177
++E + + G ++++I ++ ++ ++ S+L + + + P S + + +
Sbjct: 105 TVEALNAVHGFIAEKIR-EMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPS 163
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE---CDERLIT 234
D T + +I+ N G +IGKGG ++A+ ++GA++ + + P+ ER++T
Sbjct: 164 DPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL-SQKPDGINLQERVVT 222
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIE 261
V+ PE +KAV L+ ++ E
Sbjct: 223 VSGE--PEQN----RKAVELIIQKIQE 243
Score = 94 (38.1 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 232
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 233 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 273
Score = 84 (34.6 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 410 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 463
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 464 VPGTRN-RKVTITGTPAATQAAQYLITQRI 492
Score = 82 (33.9 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 28/95 (29%), Positives = 41/95 (43%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGK 203
Q+N T P S RPL + +T T + F ++L + G++IGK
Sbjct: 8 QQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGK 67
Query: 204 GGTIIRALQSEAGAFISVGATM---PECDERLITV 235
GG I LQ E GA I + + P ER+ +
Sbjct: 68 GGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 102
Score = 69 (29.3 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELT 451
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 71 PHDTIARPVEAVPQ 84
P D+ RP+EA P+
Sbjct: 22 PPDSRKRPLEAPPE 35
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 144 (55.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 58/218 (26%), Positives = 107/218 (49%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS-E--GPE-SRYSPA-QKAVVL----VFSRL-I 260
+++ A +SV ++ PE R+++++A E G + P ++ + L S+L +
Sbjct: 69 RTDYNASVSVPDSSGPE---RILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPL 125
Query: 261 EGTSEKGLDFSSNKGLLVNA--RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQL 318
E + + L++ KG + RL++ + G ++G G I E+R+ T T+I++ +
Sbjct: 126 ESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC- 184
Query: 319 LKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
C DRVV I G+ +V + + + + ++ G
Sbjct: 185 --CPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKG 220
Score = 56 (24.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 417
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 144 (55.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 58/218 (26%), Positives = 107/218 (49%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS-E--GPE-SRYSPA-QKAVVL----VFSRL-I 260
+++ A +SV ++ PE R+++++A E G + P ++ + L S+L +
Sbjct: 69 RTDYNASVSVPDSSGPE---RILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPL 125
Query: 261 EGTSEKGLDFSSNKGLLVNA--RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQL 318
E + + L++ KG + RL++ + G ++G G I E+R+ T T+I++ +
Sbjct: 126 ESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC- 184
Query: 319 LKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
C DRVV I G+ +V + + + + ++ G
Sbjct: 185 --CPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKG 220
Score = 56 (24.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 417
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 144 (55.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 58/218 (26%), Positives = 107/218 (49%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS-E--GPE-SRYSPA-QKAVVL----VFSRL-I 260
+++ A +SV ++ PE R+++++A E G + P ++ + L S+L +
Sbjct: 69 RTDYNASVSVPDSSGPE---RILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPL 125
Query: 261 EGTSEKGLDFSSNKGLLVNA--RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQL 318
E + + L++ KG + RL++ + G ++G G I E+R+ T T+I++ +
Sbjct: 126 ESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC- 184
Query: 319 LKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
C DRVV I G+ +V + + + + ++ G
Sbjct: 185 --CPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKG 220
Score = 56 (24.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 417
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 105 (42.0 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 32/147 (21%), Positives = 74/147 (50%)
Query: 119 SIETQHRLFGAVSQEILPDLHVDIL-SQRNSVLTTAPSSSISYVSAVRPLSLESDRVATL 177
++E + + G ++++I ++ ++ ++ S+L + + + P S + + +
Sbjct: 108 TVEALNAVHGFIAEKIR-EMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPS 166
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE---CDERLIT 234
D T + +I+ N G +IGKGG ++A+ ++GA++ + + P+ ER++T
Sbjct: 167 DPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL-SQKPDGINLQERVVT 225
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIE 261
V+ PE +KAV L+ ++ E
Sbjct: 226 VSGE--PEQN----RKAVELIIQKIQE 246
Score = 94 (38.1 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 235
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 236 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 276
Score = 84 (34.6 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 413 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 466
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 467 VPGTRN-RKVTITGTPAATQAAQYLITQRI 495
Score = 81 (33.6 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGK 203
Q+N T P S RPL + +T T + F ++L + G++IGK
Sbjct: 8 QQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGK 67
Query: 204 GGTIIRALQSEAGAFISV 221
GG I LQ E GA I +
Sbjct: 68 GGQTIVQLQKETGATIKL 85
Score = 69 (29.3 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 427 VEIAVPENLVGAILGKGGKTLVEYQELT 454
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 71 PHDTIARPVEAVPQ 84
P D+ RP+EA P+
Sbjct: 22 PPDSRKRPLEAPPE 35
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 142 (55.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 56/205 (27%), Positives = 102/205 (49%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 25 RPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 84
Query: 224 TMPECDERLITVTAS-E--GPE-SRYSPA-QKAVVL----VFSRL-IEGTSEKGLDFSSN 273
+ PE R+++++A E G + P ++ + L S+L +E + + L++
Sbjct: 85 SGPE---RILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHY 141
Query: 274 KGLLVNA--RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
KG + RL++ + G ++G G I E+R+ T T+I++ + C DRVV I
Sbjct: 142 KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPQSTDRVVLI 198
Query: 332 SGEFSKVKDAVYNVTGRLRDNHFSG 356
G+ +V + + + + ++ G
Sbjct: 199 GGKPDRVVECIKIILDLISESPIKG 223
Score = 56 (24.8 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 370 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 398
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 148 (57.2 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 41/149 (27%), Positives = 75/149 (50%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 44 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
KA ++ + E + GL + + N + R++ VGC+LG+G ++
Sbjct: 99 F---KAFAMIAYKFEEVSRVSGLCEIAENAFGVWTQRVITLGVTVGCVLGQGPLCPPGLK 155
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R V ISG
Sbjct: 156 GSTGAQVQVAGDMLP---NSTERAVTISG 181
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 98 (39.6 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
QQ + R+L S+ GA+IGKGG I+ L++E A + V + ER+ TVTA E
Sbjct: 46 QQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTADE 101
Score = 76 (31.8 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCI-SENDRVVQISGEFSKVK 339
R++V + G L+G+ G+ I E+R+ ++I + C DRV+ SGE V
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG----CAPGSTDRVLITSGEQKNVL 183
Query: 340 DAVYNVTGRLRDNHFSGT 357
+ V L++ G+
Sbjct: 184 GIIEEVMKELKEIPIKGS 201
Score = 69 (29.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + A++ + S+ G ++G+GG I+ +R+ +G I + + +R++ I G
Sbjct: 314 GPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSN-----GQPERIITIKGT 368
Query: 335 FSKVKDAVY 343
++ A Y
Sbjct: 369 EQQIHSAQY 377
Score = 63 (27.2 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
TT ++ +P ++ G++ G G + R+RQ S
Sbjct: 317 TTAQVTIPSDLGGTIIGRGGERIARIRQES 346
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 98 (39.6 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
QQ + R+L S+ GA+IGKGG I+ L++E A + V + ER+ TVTA E
Sbjct: 46 QQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTADE 101
Score = 76 (31.8 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCI-SENDRVVQISGEFSKVK 339
R++V + G L+G+ G+ I E+R+ ++I + C DRV+ SGE V
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG----CAPGSTDRVLITSGEQKNVL 183
Query: 340 DAVYNVTGRLRDNHFSGT 357
+ V L++ G+
Sbjct: 184 GIIEEVMKELKEIPIKGS 201
Score = 69 (29.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + A++ + S+ G ++G+GG I+ +R+ +G I + + +R++ I G
Sbjct: 314 GPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSN-----GQPERIITIKGT 368
Query: 335 FSKVKDAVY 343
++ A Y
Sbjct: 369 EQQIHSAQY 377
Score = 63 (27.2 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
TT ++ +P ++ G++ G G + R+RQ S
Sbjct: 317 TTAQVTIPSDLGGTIIGRGGERIARIRQES 346
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 155 (59.6 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 55/186 (29%), Positives = 89/186 (47%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEG 240
Q + +I N +VG +IGKGG I+ LQ ++GA I V M P C R + +T G
Sbjct: 132 QGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLT---G 188
Query: 241 PESRYSPAQKAVVLVFSRLIEG-TSEKGLDFSSNKGLLVNAR---LVVASNQVGCLLGKG 296
+ S A++ + V G T+ G G A + + +N+VG ++GKG
Sbjct: 189 TPDQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIGKG 248
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA--VYN--VTG--RLR 350
G I M+ TG I++I L +R +QI G +++ A + N ++G R+R
Sbjct: 249 GETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQIEHAKQLVNEIISGENRMR 308
Query: 351 DNHFSG 356
++ G
Sbjct: 309 NSAMGG 314
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 146 (56.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 56/204 (27%), Positives = 94/204 (46%)
Query: 140 VDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT-LDARTQQQEVSFRILCSNDK-V 197
+D + N+ S Y RPL D V L A Q+ V DK V
Sbjct: 33 IDSIPHLNNSTPLVDPSVYGYGVQKRPLD---DGVGNQLGALVHQRAVITEEFKVPDKMV 89
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G +IG+GG I +Q+E+G I + + ER +T + PES A++ + +
Sbjct: 90 GFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRLLGQIVD 146
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
R G D N + L++ +++VG ++GKGG I ++++ TG + +I D
Sbjct: 147 RCRNGPGFHN-DIDGNSTI---QELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDG 202
Query: 318 LLKCISENDRVVQISGEFSKVKDA 341
L + D+ ++I+G+ KV+ A
Sbjct: 203 PLP--TGADKPLRITGDPFKVQQA 224
Score = 53 (23.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLR 495
++E+ VP V+G V G NG + +++
Sbjct: 255 SIEVSVPRFVVGIVIGRNGEMIKKIQ 280
Score = 42 (19.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VP + G V G+ G N+ + Q S
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQS 384
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 146 (56.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 56/204 (27%), Positives = 94/204 (46%)
Query: 140 VDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT-LDARTQQQEVSFRILCSNDK-V 197
+D + N+ S Y RPL D V L A Q+ V DK V
Sbjct: 33 IDSIPHLNNSTPLVDPSVYGYGVQKRPLD---DGVGNQLGALVHQRAVITEEFKVPDKMV 89
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G +IG+GG I +Q+E+G I + + ER +T + PES A++ + +
Sbjct: 90 GFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRLLGQIVD 146
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
R G D N + L++ +++VG ++GKGG I ++++ TG + +I D
Sbjct: 147 RCRNGPGFHN-DIDGNSTI---QELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDG 202
Query: 318 LLKCISENDRVVQISGEFSKVKDA 341
L + D+ ++I+G+ KV+ A
Sbjct: 203 PLP--TGADKPLRITGDPFKVQQA 224
Score = 53 (23.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLR 495
++E+ VP V+G V G NG + +++
Sbjct: 255 SIEVSVPRFVVGIVIGRNGEMIKKIQ 280
Score = 42 (19.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VP + G V G+ G N+ + Q S
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQS 384
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 147 (56.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 55/204 (26%), Positives = 95/204 (46%)
Query: 140 VDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT-LDARTQQQEVSFRILCSNDK-V 197
+D + N+ S Y RPL D V L A Q+ V DK V
Sbjct: 33 IDSIPHLNNSTPLVDPSVYGYGVQKRPLD---DGVGNQLGALVHQRTVITEEFKVPDKMV 89
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G +IG+GG I +Q+E+G I + + ER +T + PES A++ + +
Sbjct: 90 GFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRLLGQIVD 146
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
R G D SN + +++ +++VG ++G+GG I ++++ TG + +I D
Sbjct: 147 RCRNGPGFHN-DIDSNSTI---QEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDG 202
Query: 318 LLKCISENDRVVQISGEFSKVKDA 341
L + D+ ++I+G+ KV+ A
Sbjct: 203 PLP--TGADKPLRITGDAFKVQQA 224
Score = 49 (22.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLR 495
++E+ VP +G V G NG + +++
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Score = 42 (19.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VP + G V G+ G N+ + Q S
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQS 384
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 150 (57.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 304 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 360
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 361 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 411
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 412 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 443
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 150 (57.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 325 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 381
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 382 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 432
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 433 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 464
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 150 (57.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 347 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 403
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 404 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 454
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 455 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 486
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 150 (57.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 351 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 407
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 408 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 458
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 459 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 490
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 150 (57.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 358 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 414
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 415 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 465
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 466 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 497
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 136 (52.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 44/140 (31%), Positives = 71/140 (50%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTA 237
+R + V RIL + GAVIGKGG I+AL+++ A +SV ++ PE R+++V+A
Sbjct: 36 SRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPDSSGPE---RILSVSA 92
Query: 238 SEGPESRYSPAQKAVVL-VFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
P ++L + L E KG+DF LL++ L G ++G
Sbjct: 93 D-------IPTVAEILLKIIPTLEEYQHHKGVDFDCELRLLIHQSLA------GSIIGLK 139
Query: 297 GTIISEMRKVTGTSIRIISD 316
G I E+R T T+I++ +
Sbjct: 140 GAKIKELRDSTQTTIKLFQE 159
Score = 56 (24.8 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 355 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 383
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 150 (57.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 49/159 (30%), Positives = 81/159 (50%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTA 237
A+ +QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 373 AQLPEQEV-VNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITG 431
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
PE+++ KA +F +L E+ F+ + + + A + V S G ++GKGG
Sbjct: 432 P--PEAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIKVPSFAAGRVIGKGG 480
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
++E++ +T + + DQ EN+ V V+I G F
Sbjct: 481 KTVNELQNLTSAEVIVPRDQTP---DENEEVIVKIIGHF 516
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 143 (55.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 55/204 (26%), Positives = 94/204 (46%)
Query: 140 VDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT-LDARTQQQEVSFRILCSNDK-V 197
+D + N+ S Y RPL D V L A Q+ V DK V
Sbjct: 33 IDSVPHLNNSTPLVDPSVYGYGVQKRPLD---DGVGNQLGALVHQRAVITEEFKVPDKMV 89
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G +IG+GG I +Q+E+G I + + ER +T + PES A++ + +
Sbjct: 90 GFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRLLGQIVD 146
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
R G D N + +++ +++VG ++GKGG I ++++ TG + +I D
Sbjct: 147 RCRNGPGFHN-DIDGNSTI---QEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDG 202
Query: 318 LLKCISENDRVVQISGEFSKVKDA 341
L + D+ ++I+G+ KV+ A
Sbjct: 203 PLP--TGADKPLRITGDPFKVQQA 224
Score = 50 (22.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLR 495
A V ++E+ VP +G V G NG + +++
Sbjct: 249 ARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Score = 42 (19.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VP + G V G+ G N+ + Q S
Sbjct: 361 VPADKCGLVIGKGGDNIKSINQQS 384
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 150 (57.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 383 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 439
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 440 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 490
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 491 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 522
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 150 (57.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 49/156 (31%), Positives = 81/156 (51%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
+Q+ VS I VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 419 EQETVSLFI--PTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP-- 474
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG +
Sbjct: 475 PEAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTV 525
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+E++ +T + + DQ EN+ V V+I G F
Sbjct: 526 NELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 558
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 150 (57.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 49/156 (31%), Positives = 81/156 (51%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
+Q+ VS I VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 419 EQETVSLFI--PTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP-- 474
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG +
Sbjct: 475 PEAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTV 525
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+E++ +T + + DQ EN+ V V+I G F
Sbjct: 526 NELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 558
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 150 (57.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 565
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 150 (57.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 565
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 150 (57.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 432 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 488
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S+ G ++GKGG ++
Sbjct: 489 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 539
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 540 ELQNLTSAEVIVPRDQTP---DENEEVIVRIIGHF 571
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 148 (57.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 48/155 (30%), Positives = 81/155 (52%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 271 EQEVVY-LFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVIITGP--P 327
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA ++ +L E+ F++ + + + A + V S G ++GKGG ++
Sbjct: 328 EAQF----KAQGRIYGKL----KEENF-FTAKEEVKLEAHIKVPSTAAGRVIGKGGKTVN 378
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ END V V+I G F
Sbjct: 379 ELQNLTSAEVIVPRDQTP---DENDDVFVKIIGHF 410
Score = 125 (49.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 58/233 (24%), Positives = 108/233 (46%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE-CDERLITVTAS 238
R +QQE+ RIL VGA+IGK G I+ + + + + + E+ IT+ +S
Sbjct: 54 RQRQQELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGATEKAITIHSS 113
Query: 239 -EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
EG S A + ++ + + E K ++ V +++ ++ VG L+GK G
Sbjct: 114 KEG----CSQACRMILEIMEK--EANDTKIVEE-------VPLKILAHNSLVGRLIGKEG 160
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS-- 355
+ ++ + TGT I I + Q L ++ +R + + G + A + +LR+ H +
Sbjct: 161 RNLKKIEQDTGTKITISALQDLTVYNQ-ERTISVRGGVEECCKAEGEIMKKLREAHENDV 219
Query: 356 GTLNTARTRSTSSVLTETSPYSR---LKDPASFGVHSSVAVSHDFSQPPLTQG 405
++N L+ +S + PAS G+ S++ ++S PL QG
Sbjct: 220 ASVNQQTNMMAGLNLSALGIFSSGMSVLPPAS-GLRGSLSTPANYS--PLLQG 269
Score = 37 (18.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQVS 498
I VP G V G+ G + L+ ++
Sbjct: 359 IKVPSTAAGRVIGKGGKTVNELQNLT 384
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 143 (55.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 55/204 (26%), Positives = 94/204 (46%)
Query: 140 VDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT-LDARTQQQEVSFRILCSNDK-V 197
+D + N+ S Y RPL D V L A Q+ V DK V
Sbjct: 33 IDSVPHLNNSTPLVDPSVYGYGVQKRPLD---DGVGNQLGALVHQRAVITEEFKVPDKMV 89
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G +IG+GG I +Q+E+G I + + ER +T + PES A++ + +
Sbjct: 90 GFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRLLGQIVD 146
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
R G D N + +++ +++VG ++GKGG I ++++ TG + +I D
Sbjct: 147 RCRNGPGFHN-DIDGNSTI---QEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDG 202
Query: 318 LLKCISENDRVVQISGEFSKVKDA 341
L + D+ ++I+G+ KV+ A
Sbjct: 203 PLP--TGADKPLRITGDPFKVQQA 224
Score = 50 (22.7 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLR 495
A V ++E+ VP +G V G NG + +++
Sbjct: 249 ARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Score = 42 (19.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VP + G V G+ G N+ + Q S
Sbjct: 361 VPADKCGLVIGKGGDNIKSINQQS 384
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 143 (55.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 140 VDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT-LDARTQQQEVSFRILCSNDK-V 197
+D + N+ S Y RPL D V L A Q+ V DK V
Sbjct: 33 IDSIPHLNNSTPLVDPSVYGYGVQKRPLD---DGVGNQLGALVHQRAVITEEFKVPDKMV 89
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G +IG+GG I +Q+E+G I + + ER +T + PES A++ + +
Sbjct: 90 GFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRLLGQIVD 146
Query: 258 RLIEGTS-EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
R G +D SS + L+ AS +VG ++GKGG I ++++ TG + +I D
Sbjct: 147 RCRNGPGFHNDVDGSST----IQELLIPAS-KVGLVIGKGGETIKQLQERTGVKMVMIQD 201
Query: 317 QLLKCISENDRVVQISGEFSKVKDA 341
L + D+ ++I+G+ KV+ A
Sbjct: 202 GPLP--TGADKPLRITGDPFKVQQA 224
Score = 49 (22.3 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLR 495
++E+ VP +G V G NG + +++
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Score = 42 (19.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VP + G V G+ G N+ + Q S
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQS 384
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 146 (56.5 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 62/234 (26%), Positives = 101/234 (43%)
Query: 141 DILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVS----FRILCSNDK 196
D Q ++V+ AP +S ++ + + + + Q+ S R + S+ +
Sbjct: 59 DADGQGDTVVPDAPKGGVSETQPIQSTASHGEAAGNQSEQQRPQDESNWIHIRAVISSQE 118
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VIGKGG + ++ +GA +V ER++TV+ GP Q AV F
Sbjct: 119 AATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVS---GP-------QDAVAKAF 168
Query: 257 SRLIEGTSEKGLDFSSN-KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+I + + LD +S + RL++ +G ++GKGGT I E++ +G + S
Sbjct: 169 GLIIRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQDASGARLNA-S 227
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA-RTRS 365
D L +E V I G V A Y V L + F G +A TRS
Sbjct: 228 DACLPLSTERSLV--ILGVADAVHIATYYVAVTLVEQLTERFGGPAASAYATRS 279
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 147 (56.8 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 48/155 (30%), Positives = 79/155 (50%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 399 EQEV-VNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGP--P 455
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E+ F+ + + + A + V S G ++GKGG ++
Sbjct: 456 EAQF----KAQGRIFGKL----KEENF-FNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVN 506
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 507 ELQNLTSAEVIVPRDQTP---DENEEVIVKIIGHF 538
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 106 (42.4 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 32/147 (21%), Positives = 74/147 (50%)
Query: 119 SIETQHRLFGAVSQEILPDLHVDIL-SQRNSVLTTAPSSSISYVSAVRPLSLESDRVATL 177
++E + + G ++++I ++ ++ ++ S+L + + + P S + + +
Sbjct: 11 TVEALNAVHGFIAEKIR-EMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPS 69
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE---CDERLIT 234
D T + +I+ N G +IGKGG ++A+ ++GA++ + + P+ ER++T
Sbjct: 70 DPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL-SQKPDGINLQERVVT 128
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIE 261
V+ PE +KAV L+ ++ E
Sbjct: 129 VSGE--PEQN----RKAVELIIQKIQE 149
Score = 94 (38.1 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 81 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 138
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 139 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 179
Score = 84 (34.6 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 316 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 369
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 370 VPGTRN-RKVTITGTPAATQAAQYLITQRI 398
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 330 VEIAVPENLVGAILGKGGKTLVEYQELT 357
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 106 (42.4 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 32/147 (21%), Positives = 74/147 (50%)
Query: 119 SIETQHRLFGAVSQEILPDLHVDIL-SQRNSVLTTAPSSSISYVSAVRPLSLESDRVATL 177
++E + + G ++++I ++ ++ ++ S+L + + + P S + + +
Sbjct: 15 TVEALNAVHGFIAEKIR-EMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPS 73
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE---CDERLIT 234
D T + +I+ N G +IGKGG ++A+ ++GA++ + + P+ ER++T
Sbjct: 74 DPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL-SQKPDGINLQERVVT 132
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIE 261
V+ PE +KAV L+ ++ E
Sbjct: 133 VSGE--PEQN----RKAVELIIQKIQE 153
Score = 94 (38.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 85 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 142
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 143 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 183
Score = 84 (34.6 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 320 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 373
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 374 VPGTRN-RKVTITGTPAATQAAQYLITQRI 402
Score = 69 (29.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 334 VEIAVPENLVGAILGKGGKTLVEYQELT 361
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 144 (55.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 59/250 (23%), Positives = 114/250 (45%)
Query: 154 PSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQS 213
P+S + +SA P+ DA Q+++ R L S + G +IGK G + L+S
Sbjct: 71 PTSQVPPISAKPPMD---------DATYATQQLTLRALLSTREAGIIIGKAGKNVAELRS 121
Query: 214 EAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273
V +P +R++T++ GP A + ++ +F++ T+ G +N
Sbjct: 122 TTNVKAGVTKAVPNVHDRVLTIS---GPLENVVRAYRFIIDIFAK--NSTNPDGTPSDAN 176
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
+ RL++A + +G ++G+ G I ++ + I S +L +R V+I G
Sbjct: 177 TPRKL--RLLIAHSLMGSIIGRNGLRIKLIQDKCSCRM-IASKDMLP--QSTERTVEIHG 231
Query: 334 EFSKVKDAVYNVTGRLRDN--HFSGTL--N-TAR-TRSTSSVLTETSPYSRLKDPASFGV 387
+ A++ + L D+ +GT+ N +R T+ S+ + SP ++ PA+
Sbjct: 232 TVDNLHAAIWEIGKCLIDDWERGAGTVFYNPVSRLTQPLPSLASTASP-QQVSPPAAPST 290
Query: 388 HSSVAVSHDF 397
S A+ +F
Sbjct: 291 TSGEAIPENF 300
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 96 (38.9 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 22/82 (26%), Positives = 47/82 (57%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 321 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 376
Query: 335 FSKVKDAVYNVTGRLRDNHFSG 356
++++A Y + ++ +SG
Sbjct: 377 QDQIQNAQYLLQNSVKQ--YSG 396
Score = 93 (37.8 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTA 237
+R + V RIL + GAVIGKGG I+AL+++ A +SV ++ PE R+++++A
Sbjct: 10 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPE---RILSISA 66
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 129 (50.5 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 48/209 (22%), Positives = 93/209 (44%)
Query: 154 PSSSISYVSAVRPLSLESDRVATLDARTQQQE-VSFRILCSNDKVGAVIGKGGTIIRALQ 212
PSSS S V +S + +L ++ +++R+L S + G +IG G +I +++
Sbjct: 41 PSSSTLTTSIVD----QSSTLPSLQDKSNIDALINYRVLVSAKEAGCLIGTNGQVIDSIR 96
Query: 213 SEAGAFISVGATMPECDERLITVTAS-EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFS 271
+E + +P ER++TV+ + S +A++ K L +
Sbjct: 97 NETNTKAGISRLIPGSHERILTVSGKLDDCAKALSYFAQALINANIESYNYFPLKQLSST 156
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
N RL++ ++Q+G L+G G I +++ S+ I S L N+R+V++
Sbjct: 157 PNTEETTILRLLIPNSQMGTLIGSKGARIQQLQNNFNISM-IASKSFLP--GSNERLVEL 213
Query: 332 SGEFSKVKDAVYNVTGRLRDNHFSGTLNT 360
G + D++ + R FS + T
Sbjct: 214 QGTVDDLYDSL-RIISRCLIEDFSSIVGT 241
Score = 103 (41.3 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 28/125 (22%), Positives = 58/125 (46%)
Query: 218 FISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL 277
F S + PE ++ + + + + + L S + + ++ L SN L
Sbjct: 10 FTSENESKPEPTQQQQQQSTQQTSQQQQQQQPSSSTLTTSIVDQSSTLPSLQDKSNIDAL 69
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
+N R++V++ + GCL+G G +I +R T T I +L+ ++R++ +SG+
Sbjct: 70 INYRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGI--SRLIP--GSHERILTVSGKLDD 125
Query: 338 VKDAV 342
A+
Sbjct: 126 CAKAL 130
Score = 56 (24.8 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
TT I P +++G++ G+ GS + +R+VS
Sbjct: 287 TTDTISFPNDIVGALIGKRGSRIDGVRKVS 316
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 133 (51.9 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 58/224 (25%), Positives = 107/224 (47%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ + E+GA +++ C ER+IT+ GP +
Sbjct: 26 LTIRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEG--NCPERIITLA---GPTNA- 78
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + + S+ V +RLVV +Q G L+GKG I E+ +
Sbjct: 79 --TFKAFAMI--KLEEDRS-RSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGE 133
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV-TGRLRDNHF-SGTLNTART 363
TG +++ D L + +++ + I+ + + V + L H G
Sbjct: 134 TTGP-VQVAGDMLP---NSSEQAIPIASIPQSIIECVNQIGVVMLETQHSPKGVTIPYLP 189
Query: 364 RSTSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPL 402
+ +SS++ YS + SF H+ S+ ++ D +PPL
Sbjct: 190 KPSSSIVIFAGGQDRYSIGSNSVSFP-HTILSMYLNPDLERPPL 232
Score = 51 (23.0 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
TT + P ++IG + G G+ + + Q+S
Sbjct: 282 TTSHELTPNDLIGCIIGRQGAKINEIHQMS 311
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 103 (41.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 148 SVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTI 207
S+L + + + P S + + + D T + +I+ N G +IGKGG
Sbjct: 12 SILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGAT 71
Query: 208 IRALQSEAGAFISVGATMPE---CDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
++A+ ++GA++ + + P+ ER++TV+ PE +KAV L+ ++ E
Sbjct: 72 VKAIMEQSGAWVQL-SQKPDGINLQERVVTVSGE--PEQN----RKAVELIIQKIQE 121
Score = 94 (38.1 bits), Expect = 0.00038, Sum P(2) = 0.00037
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 110
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 111 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 151
Score = 84 (34.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 288 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 341
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 342 VPGTRN-RKVTITGTPAATQAAQYLITQRI 370
Score = 69 (29.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 302 VEIAVPENLVGAILGKGGKTLVEYQELT 329
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 48/164 (29%), Positives = 85/164 (51%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG---ATMP--ECDERLITVTAS 238
QE ++ + N+ VGA+IG G+ IR++ + A + + A P + ER +T+ +
Sbjct: 317 QETTY-LYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGT 375
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PE ++ KA ++F ++ E G D + + L+VAS+QVG ++GKGG
Sbjct: 376 --PEGQW----KAQYMIFEKMREEGFMCGTD-----DVRLTVELLVASSQVGRIIGKGGQ 424
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDA 341
+ E+++VTG+ I++ L ++ V I G F V+ A
Sbjct: 425 NVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSVQSA 468
Score = 118 (46.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 40/173 (23%), Positives = 85/173 (49%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASEG 240
+Q + RIL ++ VGA+IG+ G+ IR + ++ A + V E+ IT+ +
Sbjct: 89 RQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSLEKSITIYGN-- 146
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+ + A K ++ V + T++ L ++ L +++ +N +G ++GK G I
Sbjct: 147 PEN-CTNACKRILEVMQQEAISTNKGELSPECSEICL---KILAHNNLIGRIIGKSGNTI 202
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
+ + T T I + S + + +R++ + G + A ++ +LR ++
Sbjct: 203 KRIMQDTDTKITVSSINDINSFNL-ERIITVKGLIENMSRAENQISTKLRQSY 254
Score = 59 (25.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
TVE++V + +G + G+ G N+ L++V+
Sbjct: 405 TVELLVASSQVGRIIGKGGQNVRELQRVT 433
Score = 52 (23.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T + +P N +G++ G GS++ + + S
Sbjct: 319 TTYLYIPNNAVGAIIGTRGSHIRSIMRFS 347
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 102 (41.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 148 SVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTI 207
S+L + + + P S + + + D T + +I+ N G +IGKGG
Sbjct: 12 SILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGAT 71
Query: 208 IRALQSEAGAFISVGATMPE---CDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
++A+ ++GA++ + + P+ ER++TV+ PE +KAV L+ ++ E
Sbjct: 72 VKAVMEQSGAWVQL-SQKPDGINLQERVVTVSGE--PEQN----RKAVELIIQKIQE 121
Score = 94 (38.1 bits), Expect = 0.00038, Sum P(2) = 0.00037
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 110
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 111 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 151
Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 288 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 341
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 342 VPGTRN-RKVTITGTPAATQAAQYLITQRI 370
Score = 69 (29.3 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 302 VEIAVPENLVGAILGKGGKTLVEYQELT 329
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 139 (54.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 55/204 (26%), Positives = 93/204 (45%)
Query: 140 VDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVAT-LDARTQQQEVSFRILCSNDK-V 197
+D + N+ S Y RPL D V L A Q+ V DK V
Sbjct: 33 IDSIPHLNNSTPLVDPSVYGYGVQKRPLD---DGVGNQLGALVHQRAVITEEFKVPDKMV 89
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G +IG+GG I +Q+E+G I + + ER +T + PES A++ + +
Sbjct: 90 GFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRLLGQIVD 146
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
R G D N + + + +++VG ++GKGG I ++++ TG + +I D
Sbjct: 147 RCRNGPGFHN-DVDGNSTV---QEIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDG 202
Query: 318 LLKCISENDRVVQISGEFSKVKDA 341
L + D+ ++I+G+ KV+ A
Sbjct: 203 PLP--TGADKPLRITGDPFKVQQA 224
Score = 49 (22.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLR 495
++E+ VP +G V G NG + +++
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Score = 43 (20.2 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
V VP + G V G+ G N+ + Q S
Sbjct: 357 VTYTVPADKCGLVIGKGGENIKSINQQS 384
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 136 (52.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 52/200 (26%), Positives = 94/200 (47%)
Query: 170 ESDRVAT-LDARTQQQEVSFRILCSNDK-VGAVIGKGGTIIRALQSEAGAFISVGATMPE 227
+++R+ L A Q+ V DK VG +IG+GG I +Q E+G I +
Sbjct: 49 DTERIGNQLGALVHQRAVITEDFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGG 108
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASN 287
ER +T + PES A++ + + R G D N + +++ ++
Sbjct: 109 MPERPCVLTGT--PES-IEQAKRLLGQIVDRCRNGPGFHN-DVDGNSTI---QEILIPAS 161
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
+VG ++GKGG I ++++ TG + +I D + + D+ ++I+G+ KV+ A V
Sbjct: 162 KVGLVIGKGGETIKQLQERTGVKMIMIQDGPMP--TGADKPLRITGDAFKVQQAREMVLE 219
Query: 348 RLRDNH---FSGTLNTARTR 364
+R+ F G N +R
Sbjct: 220 IIREKDQADFRGVRNDFSSR 239
Score = 49 (22.3 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLR 495
++E+ VP +G V G NG + +++
Sbjct: 244 SIEVSVPRFAVGIVIGRNGEMIKKIQ 269
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VP + G V G+ G N+ + Q S
Sbjct: 350 VPADKCGLVIGKGGENIKSINQQS 373
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 56/227 (24%), Positives = 104/227 (45%)
Query: 162 SAVRPLSLESDRVATLDARTQQQEVSF-RILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
S RPL + +T T + F ++L + G++IGKGG I LQ E GA I
Sbjct: 8 SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 67
Query: 221 VGATM---PECDERLITVTAS-EGPESRYS-PAQKAVVLVFS-RLIEGTSEKGLDFSSNK 274
+ + P ER+ + + E + + A+K + + E S + N
Sbjct: 68 LSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNP 127
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
+ +++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE
Sbjct: 128 DRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGE 185
Query: 335 FSKVKDAVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
+ + AV + +++++ SG+ LN + T V SPY+
Sbjct: 186 PEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 232
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 127 (49.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 46/153 (30%), Positives = 75/153 (49%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ PE R+++++A E+ +K + L E KG DF LL++ L
Sbjct: 79 SGPE---RILSISADT--ETIGEILKK----IIPTLEEYQHYKGSDFDCELRLLIHQSLA 129
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
G ++G G I E+R+ T T+I++ +
Sbjct: 130 ------GGIIGVKGAKIKELRENTQTTIKLFQE 156
Score = 56 (24.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 381
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 127 (49.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 46/153 (30%), Positives = 75/153 (49%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ PE R+++++A E+ +K + L E KG DF LL++ L
Sbjct: 79 SGPE---RILSISADT--ETIGEILKK----IIPTLEEYQHYKGSDFDCELRLLIHQSLA 129
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
G ++G G I E+R+ T T+I++ +
Sbjct: 130 ------GGIIGVKGAKIKELRENTQTTIKLFQE 156
Score = 56 (24.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 381
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 127 (49.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 46/153 (30%), Positives = 75/153 (49%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ PE R+++++A E+ +K + L E KG DF LL++ L
Sbjct: 79 SGPE---RILSISADT--ETIGEILKK----IIPTLEEYQHYKGSDFDCELRLLIHQSLA 129
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
G ++G G I E+R+ T T+I++ +
Sbjct: 130 ------GGIIGVKGAKIKELRENTQTTIKLFQE 156
Score = 56 (24.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 381
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 136 (52.9 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 52/200 (26%), Positives = 94/200 (47%)
Query: 170 ESDRVAT-LDARTQQQEVSFRILCSNDK-VGAVIGKGGTIIRALQSEAGAFISVGATMPE 227
+++R+ L A Q+ V DK VG +IG+GG I +Q E+G I +
Sbjct: 78 DTERIGNQLGALVHQRAVITEDFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGG 137
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASN 287
ER +T + PES A++ + + R G D N + +++ ++
Sbjct: 138 MPERPCVLTGT--PES-IEQAKRLLGQIVDRCRNGPGFHN-DVDGNSTI---QEILIPAS 190
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
+VG ++GKGG I ++++ TG + +I D + + D+ ++I+G+ KV+ A V
Sbjct: 191 KVGLVIGKGGETIKQLQERTGVKMIMIQDGPMP--TGADKPLRITGDAFKVQQAREMVLE 248
Query: 348 RLRDNH---FSGTLNTARTR 364
+R+ F G N +R
Sbjct: 249 IIREKDQADFRGVRNDFSSR 268
Score = 49 (22.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLR 495
++E+ VP +G V G NG + +++
Sbjct: 273 SIEVSVPRFAVGIVIGRNGEMIKKIQ 298
Score = 42 (19.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VP + G V G+ G N+ + Q S
Sbjct: 379 VPADKCGLVIGKGGENIKSINQQS 402
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 141 (54.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 48/187 (25%), Positives = 91/187 (48%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGP 241
+QE+ ++ VGA+IGK G I+ L A A I + P+ R++ +T P
Sbjct: 404 EQEM-VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGP--P 460
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA ++ +L E+ F + + + + V ++ G ++GKGG ++
Sbjct: 461 EAQF----KAQGRIYGKL----KEENF-FGPKEEVKLETHIRVPASAAGRVIGKGGKTVN 511
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDA---VYNVTGRLRDNHFSGT 357
E++ +T + + DQ END+V V+I G F + A + ++ +++ H G
Sbjct: 512 ELQNLTAAEVVVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQVKQQHQKGQ 568
Query: 358 LNTARTR 364
N A+ R
Sbjct: 569 SNLAQAR 575
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 141 (54.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 48/187 (25%), Positives = 91/187 (48%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGP 241
+QE+ ++ VGA+IGK G I+ L A A I + P+ R++ +T P
Sbjct: 404 EQEM-VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGP--P 460
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA ++ +L E+ F + + + + V ++ G ++GKGG ++
Sbjct: 461 EAQF----KAQGRIYGKL----KEENF-FGPKEEVKLETHIRVPASAAGRVIGKGGKTVN 511
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDA---VYNVTGRLRDNHFSGT 357
E++ +T + + DQ END+V V+I G F + A + ++ +++ H G
Sbjct: 512 ELQNLTAAEVVVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQVKQQHQKGQ 568
Query: 358 LNTARTR 364
N A+ R
Sbjct: 569 SNQAQAR 575
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 134 (52.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 58/230 (25%), Positives = 99/230 (43%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
V RLVV ++Q G L+GKGG I E+R+ TG +++ D L + +R + I+G
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP---NSTERAITIAGIPQS 96
Query: 338 VKDAVYNVT----GRLRDNHFSGTLNTARTRSTSSVLTETSP---YSRLKDPASFGVHS- 389
+ + V + L + G R + +SS + YS D ASF H+
Sbjct: 97 IIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFP-HTT 155
Query: 390 -SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQXX 448
S+ ++ D PPL + G +++ P KL + H + G+S
Sbjct: 156 PSMCLNPDLEGPPL-EAYTIQG-QYAIPQPDLTKLHQL-AMQQSHFPMTHG-NTGFSGIE 211
Query: 449 XXXXXXXXXXXXXXXAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
+ T T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 212 SSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMS 260
Score = 92 (37.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ + L + ++ +GC++G+ G I+E+R+++G I+I + D
Sbjct: 223 GLDASAQT---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTD 275
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 276 RQVTITGSAASISLAQYLINVRL 298
Score = 88 (36.0 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTASEGPESR 244
V+ R++ + G++IGKGG I+ ++ GA + V G +P ER IT+ P+S
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI--PQSI 97
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGL 268
++ V++ L + + KG+
Sbjct: 98 IECVKQICVVMLETLSQ-SPPKGV 120
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 140 (54.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 48/187 (25%), Positives = 91/187 (48%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGP 241
+QE+ ++ VGA+IGK G I+ L A A I + P+ R++ +T P
Sbjct: 404 EQEM-VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP--P 460
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA ++ +L E+ F + + + + V ++ G ++GKGG ++
Sbjct: 461 EAQF----KAQGRIYGKL----KEENF-FGPKEEVKLETHIRVPASAAGRVIGKGGKTVN 511
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDA---VYNVTGRLRDNHFSGT 357
E++ +T + + DQ END+V V+I G F + A + ++ +++ H G
Sbjct: 512 ELQNLTAAEVVVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQVKQQHQKGQ 568
Query: 358 LNTARTR 364
N A+ R
Sbjct: 569 SNQAQAR 575
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 140 (54.3 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 44/141 (31%), Positives = 74/141 (52%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A P+ R++ +T PE+++ KA +
Sbjct: 421 VGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGP--PEAQF----KAQGRI 474
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ +L E+ F + + + A + V S G ++GKGG ++E++ +T + +
Sbjct: 475 YGKL----KEENF-FGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR 529
Query: 316 DQLLKCISENDRVV-QISGEF 335
DQ END+VV +I+G F
Sbjct: 530 DQTP---DENDQVVVKITGHF 547
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 44/141 (31%), Positives = 74/141 (52%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A P+ R++ +T PE+++ KA +
Sbjct: 429 VGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGP--PEAQF----KAQGRI 482
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ +L E+ F + + + A + V S G ++GKGG ++E++ +T + +
Sbjct: 483 YGKL----KEENF-FGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR 537
Query: 316 DQLLKCISENDRVV-QISGEF 335
DQ END+VV +I+G F
Sbjct: 538 DQTP---DENDQVVVKITGHF 555
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 125 (49.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 46/153 (30%), Positives = 75/153 (49%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ PE R+++++A E+ +K + L E KG DF LL++ L
Sbjct: 79 SGPE---RILSISADI--ETIGEILKK----IIPTLEEYQHYKGSDFDCELRLLIHQSLA 129
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
G ++G G I E+R+ T T+I++ +
Sbjct: 130 ------GGIIGVKGAKIKELRENTQTTIKLFQE 156
Score = 56 (24.8 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 352 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 380
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 97 (39.2 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 28/104 (26%), Positives = 53/104 (50%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
V+ P+S+ + R +Q +I+ N G +IGKGG ++A+ ++GA++
Sbjct: 33 VAKTEPVSILQPQTTVNPDRIKQ----VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQ 88
Query: 221 VGATMPE---CDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
+ + P+ ER++TV+ PE +KAV L+ ++ E
Sbjct: 89 L-SQKPDGINLQERVVTVSGE--PEQN----RKAVELIIQKIQE 125
Score = 96 (38.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 27/109 (24%), Positives = 56/109 (51%)
Query: 273 NKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS 332
N + +++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +S
Sbjct: 49 NPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVS 106
Query: 333 GEFSKVKDAVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
GE + + AV + +++++ SG+ LN + T V SPY+
Sbjct: 107 GEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 155
Score = 84 (34.6 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
I GT EK D S + + V N VG +LGKGG + E +++TG I+I
Sbjct: 292 ILGT-EKSTDGSKDV-----VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 345
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ N R V I+G + + A Y +T R+
Sbjct: 346 VPGTRN-RKVTITGTPAATQAAQYLITQRI 374
Score = 69 (29.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQVS 498
VEI VPEN++G++ G+ G L+ ++++
Sbjct: 306 VEIAVPENLVGAILGKGGKTLVEYQELT 333
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 135 (52.6 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 195 DK-VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVV 253
DK VG +IG+GG I +Q E+ I + A +R T+T + PES A++ +
Sbjct: 92 DKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTLTGT--PES-IEQAKRLLG 148
Query: 254 LVFSRLIEGTS-EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIR 312
+ R G +D SS V L+ AS +VG ++GKGG I ++++ TG +
Sbjct: 149 QIVDRCRNGPGFHSQMDGSS----AVQEILIPAS-KVGLVIGKGGDTIKQLQERTGVKMI 203
Query: 313 IISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+I D + + +D+ ++ISG+ KV+ A V +R+ G + R+
Sbjct: 204 MIQDDPMP--TGSDKPLRISGDPYKVQQARELVVEIIREKD-QGDFRSGRS 251
Score = 133 (51.9 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 52/177 (29%), Positives = 82/177 (46%)
Query: 190 ILCSNDKVGAVIGKGGTIIRALQSEAGA-FISV-GATMPECDERLITVTASEGPESRYSP 247
IL KVG VIGKGG I+ LQ G I + MP ++ + ++ G +
Sbjct: 173 ILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSDKPLRIS---GDPYKVQQ 229
Query: 248 AQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
A++ VV + +G G DF S G ++ + V VG ++G+ G +I +++
Sbjct: 230 ARELVVEIIREKDQGDFRSGRSDFGSRLGSSID--VAVPRFAVGIVIGRNGEMIKKIQND 287
Query: 307 TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV-----TGRLRDNHFSGTL 358
G I+ D IS DRV Q+ G+ + + AV+ + T + RD F G L
Sbjct: 288 AGVRIQFKPDD---GISP-DRVAQVMGQPERCQHAVHLINELVQTAQERDG-FGGPL 339
Score = 48 (22.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLR 495
+++++ VP +G V G NG + +++
Sbjct: 259 SSIDVAVPRFAVGIVIGRNGEMIKKIQ 285
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 133 (51.9 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 41/134 (30%), Positives = 63/134 (47%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG+++GK G R L E G I++ C ER+IT
Sbjct: 14 LTIRLLMHGKEVGSIMGKKGESARKLCEECGTLINI--LEENCLERIITFAGQR------ 65
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL-LVNARLVVASNQVGCLLGKGGTIISEMR 304
+ KA ++ +L EG + S+ VN LVV Q G L+GKGG I E+R
Sbjct: 66 NAIFKAFAMIIDKL-EGDLSSSIANSTAASRPSVNLCLVVPDCQCGSLIGKGGCKIKEIR 124
Query: 305 KVTGTSIRIISDQL 318
+ TG +++ L
Sbjct: 125 ENTGAQVQVAGHML 138
Score = 42 (19.8 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVSC 499
A T+ E+ VP ++IG + G+ + + Q +C
Sbjct: 248 ASAQTTSHELTVPNDLIGCIIRHQGAEINEVCQ-AC 282
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 126 (49.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 48/195 (24%), Positives = 92/195 (47%)
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVL 254
GA+IGKGG I +LQ + GA + + + P ER+ +T S +A+++
Sbjct: 111 GAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGST----------EAIMV 160
Query: 255 VFSRLIEGTSEK--------GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
V +++ EK D + +++V ++ G ++GKGG I ++++
Sbjct: 161 VMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEE 220
Query: 307 TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT-LNTARTRS 365
+G+ ++I Q +S +R + I G+ K+A + ++ ++ SGT LN +
Sbjct: 221 SGSYVQI--SQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCLNVSYADV 278
Query: 366 TSSV--LTET-SPYS 377
+ V T SPY+
Sbjct: 279 SGPVANFNPTGSPYA 293
Score = 106 (42.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 24/94 (25%), Positives = 52/94 (55%)
Query: 171 SDRVATLDAR-TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA--TMPE 227
++++ D++ TQ+++ +IL N G +IGKGG I+ ++ E+G+++ + T
Sbjct: 176 TNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVS 235
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
ER IT+ + E+ + A ++ S+++E
Sbjct: 236 LQERCITIIGDK--ENN----KNACKMILSKIVE 263
Score = 72 (30.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 289 VGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
+G +LG G + E++ V+G +++I + + N R+V I+G+ S + A Y + +
Sbjct: 528 IGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRN-RIVTITGQPSAIAKAQYLIEQK 586
Query: 349 LRD 351
+ +
Sbjct: 587 INE 589
Score = 57 (25.1 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 475 VPENVIGSVYGENGSNLLRLRQVS 498
VPE +IG++ G +G +L+ ++ VS
Sbjct: 523 VPEVIIGAILGPSGRSLVEIQHVS 546
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 123 (48.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 43/153 (28%), Positives = 73/153 (47%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V R+L + GAVIGKGG I+AL+++ A +SV +
Sbjct: 23 RPAEDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 82
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ PE R+++V+A + ++ + L E G DF LL++ L
Sbjct: 83 SGPE---RILSVSAD------IDTIGEILLKIIPTLEEYQHYSGTDFDCELRLLIHQSLA 133
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
G ++G G I E+R+ T T+I++ +
Sbjct: 134 ------GGIIGVKGAKIKELRENTQTTIKLFQE 160
Score = 56 (24.8 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 357 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 385
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 137 (53.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 48/187 (25%), Positives = 91/187 (48%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGP 241
+QE+ ++ VGA+IGK G I+ L A A I + P+ R++ +T P
Sbjct: 404 EQEM-VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP--P 460
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA ++ +L E+ F + + + + V ++ G ++GKGG ++
Sbjct: 461 EAQF----KAQGRIYGKL----KEENF-FGPKEEVKLETHIRVPASAAGRVIGKGGKTVN 511
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDA---VYNVTGRLRDNHFSGT 357
E++ +T + + DQ END+V V+I G F + A + ++ +++ H G
Sbjct: 512 ELQNLTAAEVVVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQVKQLHQKGQ 568
Query: 358 LNTARTR 364
N A+ R
Sbjct: 569 SNQAQAR 575
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 137 (53.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 48/187 (25%), Positives = 91/187 (48%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGP 241
+QE+ ++ VGA+IGK G I+ L A A I + P+ R++ +T P
Sbjct: 404 EQEM-VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP--P 460
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA ++ +L E+ F + + + + V ++ G ++GKGG ++
Sbjct: 461 EAQF----KAQGRIYGKL----KEENF-FGPKEEVKLETHIRVPASAAGRVIGKGGKTVN 511
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDA---VYNVTGRLRDNHFSGT 357
E++ +T + + DQ END+V V+I G F + A + ++ +++ H G
Sbjct: 512 ELQNLTAAEVVVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQVKQLHQKGQ 568
Query: 358 LNTARTR 364
N A+ R
Sbjct: 569 SNQAQAR 575
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 137 (53.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 48/187 (25%), Positives = 91/187 (48%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGP 241
+QE+ ++ VGA+IGK G I+ L A A I + P+ R++ +T P
Sbjct: 404 EQEM-VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP--P 460
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA ++ +L E+ F + + + + V ++ G ++GKGG ++
Sbjct: 461 EAQF----KAQGRIYGKL----KEENF-FGPKEEVKLETHIRVPASAAGRVIGKGGKTVN 511
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDA---VYNVTGRLRDNHFSGT 357
E++ +T + + DQ END+V V+I G F + A + ++ +++ H G
Sbjct: 512 ELQNLTAAEVVVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQVKQLHQKGQ 568
Query: 358 LNTARTR 364
N A+ R
Sbjct: 569 SNQAQAR 575
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 123 (48.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 66/321 (20%), Positives = 134/321 (41%)
Query: 31 VETILHETIRRPVDTIPHE---TIHRPL-DTISHETIRRSLEAVP-HDTI-ARPVEAVPQ 84
V+T + P++T+ H T+ R D +E +S + +DTI + ++ +
Sbjct: 13 VDTPDEPVLTPPIETVNHNITSTLKRKNEDADDNEGNEQSANSHSGNDTINSSSIKRIAL 72
Query: 85 EILWRSLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILS 144
+ L+ +E+ + + +SH +E+ ++ Q+ +QE L + S
Sbjct: 73 DSEQLDLQDKEEELQQTAPIITNNSTSHLETESEELDKQNEDANK-TQETLEPAYAPSES 131
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKG 204
T SSS +P+S DR D T + R+ C + ++G+
Sbjct: 132 DHADDQNTGSSSSS------KPVSNHRDR----DDPTF---IQLRMYCPVKEASTIVGRK 178
Query: 205 GTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264
G I L+ +A I+V + ER++ V +GP + +A L+ ++E
Sbjct: 179 GETINHLREKANVRITVSENLKGVPERIVAV---KGPAENVA---RAFGLITRVILEEPE 232
Query: 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE 324
++ +S + N +L++ +G ++GK G E+ + + ++ + L
Sbjct: 233 DEPASINSQQ---YNLKLLIPHPMIGFIIGKQGLKFREIEENSAAKLKAAENALPY---S 286
Query: 325 NDRVVQISGEFSKVKDAVYNV 345
DRV+ + G + AVY +
Sbjct: 287 TDRVLSVMGVGDAIHIAVYYI 307
Score = 57 (25.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
++ V + IGSV G+ G+N+ +R+ S
Sbjct: 445 DVFVANSSIGSVIGKRGNNIKHIRETS 471
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 143 (55.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 47/172 (27%), Positives = 85/172 (49%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+ VS + VG +IG+GG I LQ E+G I + +R +T+T S P++
Sbjct: 88 RSVSEEFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGS--PDA 145
Query: 244 RYSPAQKAVVLVFSRLIE-GTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+ A++ + S ++E G + G+ V+ ++ AS + G ++GKGG I +
Sbjct: 146 IMT-AKR----LLSEIVEKGRPSPAFHHNDGPGMSVHEMMIPAS-KAGLVIGKGGETIKQ 199
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
+++ G + +I D + D+ ++ISG+ KV+ A V +RD F
Sbjct: 200 LQERAGVKMVMIQDGPQN--TGADKPLRISGDPFKVQQAKDMVMDLIRDQGF 249
Score = 38 (18.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLR 495
++++ VP +G V G +G + +++
Sbjct: 269 SLDVPVPRFAVGIVIGRSGEMIKKIQ 294
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 49/183 (26%), Positives = 85/183 (46%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q + RI + KVG +IGKGG ++R LQ +GA I + + G S
Sbjct: 230 QSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVS 289
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
A+K + V + + G G+ + +G+ + V S++VG ++G+GG I M
Sbjct: 290 CIEKAEKLINAVIAEVEAG----GVPALAARGVPEQMEIKVPSDKVGVIIGRGGETIKNM 345
Query: 304 RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKV-------KDAVYNVTGRLRDNHFSG 356
+ + I++I + + +R V+ISG+ ++ KD +Y GR + +SG
Sbjct: 346 QTKSRARIQLIPQN--EGDASKERTVRISGDKRQIDIATALIKDVMYQ-DGR--PSPYSG 400
Query: 357 TLN 359
N
Sbjct: 401 GFN 403
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 135 (52.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 43/141 (30%), Positives = 72/141 (51%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A P+ R++ +T PE+++ KA +
Sbjct: 430 VGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGP--PEAQF----KAQGRI 483
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ +L E+ F + + + + V S G ++GKGG ++E++ +T + +
Sbjct: 484 YGKL----KEENF-FGPKEEVKLETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR 538
Query: 316 DQLLKCISENDRVV-QISGEF 335
DQ END VV +I+G F
Sbjct: 539 DQTP---DENDEVVVKITGHF 556
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 133 (51.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 43/141 (30%), Positives = 74/141 (52%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A + +R++ ++ PE+++ KA +
Sbjct: 420 VGAIIGKQGQHIKQLSRFAGASIKIAPADGIDAKQRMVIISGP--PEAQF----KAQGRI 473
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
F +L E+ F + + + A + V S G ++GKGG ++E++ +T + +
Sbjct: 474 FGKL----KEENF-FGPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVVVPR 528
Query: 316 DQLLKCISENDRVV-QISGEF 335
DQ END+VV +I+G F
Sbjct: 529 DQTP---DENDQVVVKITGHF 546
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 132 (51.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 43/141 (30%), Positives = 75/141 (53%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A P+ R++ +T PE+++ KA +
Sbjct: 417 VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP--PEAQF----KAQGRI 470
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ ++ E E + S + + + A + V S G ++GKGG ++E++ ++ + +
Sbjct: 471 YGKIKE---ENFV--SPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPR 525
Query: 316 DQLLKCISENDRVV-QISGEF 335
DQ END+VV +I+G F
Sbjct: 526 DQTP---DENDQVVVKITGHF 543
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 132 (51.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 43/141 (30%), Positives = 75/141 (53%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A P+ R++ +T PE+++ KA +
Sbjct: 417 VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP--PEAQF----KAQGRI 470
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ ++ E E + S + + + A + V S G ++GKGG ++E++ ++ + +
Sbjct: 471 YGKIKE---ENFV--SPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPR 525
Query: 316 DQLLKCISENDRVV-QISGEF 335
DQ END+VV +I+G F
Sbjct: 526 DQTP---DENDQVVVKITGHF 543
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 132 (51.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 43/141 (30%), Positives = 75/141 (53%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A P+ R++ +T PE+++ KA +
Sbjct: 417 VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP--PEAQF----KAQGRI 470
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ ++ E E + S + + + A + V S G ++GKGG ++E++ ++ + +
Sbjct: 471 YGKIKE---ENFV--SPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVVPR 525
Query: 316 DQLLKCISENDRVV-QISGEF 335
DQ END+VV +I+G F
Sbjct: 526 DQTP---DENDQVVVKITGHF 543
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 132 (51.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 43/141 (30%), Positives = 75/141 (53%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A P+ R++ +T PE+++ KA +
Sbjct: 418 VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP--PEAQF----KAQGRI 471
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ ++ E E + S + + + A + V S G ++GKGG ++E++ ++ + +
Sbjct: 472 YGKIKE---ENFV--SPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPR 526
Query: 316 DQLLKCISENDRVV-QISGEF 335
DQ END+VV +I+G F
Sbjct: 527 DQTP---DENDQVVVKITGHF 544
>UNIPROTKB|Q5T6W2 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00910458 SMR:Q5T6W2 Ensembl:ENST00000457156
Uniprot:Q5T6W2
Length = 379
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 48/166 (28%), Positives = 80/166 (48%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ PE R+++++A E+ +K + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGPE---RILSISADI--ETIGEILKK----IIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
LL++ L G ++G G I E+R+ T T+I++ +
Sbjct: 120 DCELRLLIHQSLA------GGIIGVKGAKIKELRENTQTTIKLFQE 159
>UNIPROTKB|D4ACH3 [details] [associations]
symbol:D4ACH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OrthoDB:EOG46WZ8K IPI:IPI00464805 Ensembl:ENSRNOT00000055302
Uniprot:D4ACH3
Length = 282
Score = 125 (49.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 58/227 (25%), Positives = 103/227 (45%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGT--SEKGLDFSSNKGLLVNARLVV--ASNQVGCLLGKGGTIIS 301
KA ++ +L E S K NK +L RL+ S + ++ G
Sbjct: 69 F---KAFAMIIDKLEEDKICSLKVRSICYNKKVLT-IRLIFFQPSLKANNIIYISGCREK 124
Query: 302 EM-RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT 360
E+ K TG +++ D L + +R + I+G + + V + + ++ G
Sbjct: 125 EVILKSTGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIP 181
Query: 361 ARTRSTSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPL 402
R + +SS + YS D ASF H+ S+ ++ D PPL
Sbjct: 182 YRPKPSSSPVIFAGGQDRYSTGSDSASFP-HTTPSMCLNPDLEGPPL 227
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 130 (50.8 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 48/191 (25%), Positives = 92/191 (48%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + A P+ R++ VT PE+++ KA +
Sbjct: 419 VGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGP--PEAQF----KAQGRI 472
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ +L E+ F + + + + VA+ G ++GKGG ++E++ +T + +
Sbjct: 473 YGKL----KEENF-FGPKEEVKLETHIKVAAAAAGRVIGKGGKTVNELQNLTAAEVVVPR 527
Query: 316 DQLLKCISENDRV-VQISGEF--SKVKDA-VYNVTGRLRDNHFSGTLNTARTRSTSSVLT 371
+Q E+D+V V+I G F S++ + ++ +++ G + T + +
Sbjct: 528 EQTP---DEHDQVIVKIIGHFYASQLAQRKIRDILTQVKQQQKGGGMGTPQGPHPQGMTE 584
Query: 372 ETSPYSRLKDP 382
SP ++P
Sbjct: 585 LGSPQGLAQEP 595
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 123 (48.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 40/185 (21%), Positives = 83/185 (44%)
Query: 156 SSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEA 215
S IS S P +D + V+ + VG VIG+GG+ I+ +Q++A
Sbjct: 40 SLISLFSDSLPAKRPADDTDLNPFMDDNEAVNEKYPIPESAVGIVIGRGGSEIQGIQAKA 99
Query: 216 GAFISVGATM-PECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK 274
G + + P R++T+ EG S A+ + V +R + G +
Sbjct: 100 GCRVQMSPDADPSSGVRMVTL---EGSRSNVETAKHLINEVVARSQNPRPQYGFPRAQT- 155
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
+ + N+ G ++GK G I ++++ +G + ++ D + +S+ + ++I+G+
Sbjct: 156 ----TIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDN--QSVSDQSKPLRITGD 209
Query: 335 FSKVK 339
K++
Sbjct: 210 PQKIE 214
Score = 52 (23.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 472 EIIVPENVIGSVYGENGSNLLRL 494
E++VP + +G + G+ G + RL
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRL 274
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 123 (48.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 40/185 (21%), Positives = 83/185 (44%)
Query: 156 SSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEA 215
S IS S P +D + V+ + VG VIG+GG+ I+ +Q++A
Sbjct: 40 SLISLFSDSLPAKRPADDTDLNPFMDDNEAVNEKYPIPESAVGIVIGRGGSEIQGIQAKA 99
Query: 216 GAFISVGATM-PECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK 274
G + + P R++T+ EG S A+ + V +R + G +
Sbjct: 100 GCRVQMSPDADPSSGVRMVTL---EGSRSNVETAKHLINEVVARSQNPRPQYGFPRAQT- 155
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
+ + N+ G ++GK G I ++++ +G + ++ D + +S+ + ++I+G+
Sbjct: 156 ----TIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDN--QSVSDQSKPLRITGD 209
Query: 335 FSKVK 339
K++
Sbjct: 210 PQKIE 214
Score = 52 (23.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 472 EIIVPENVIGSVYGENGSNLLRL 494
E++VP + +G + G+ G + RL
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRL 274
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 123 (48.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 41/166 (24%), Positives = 83/166 (50%)
Query: 185 EVSFRILCSNDKVGAVIG-KGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+V R+LC ++G KG TI R ++SE A I++ + ER++ V +
Sbjct: 66 DVHLRMLCLVKHASLIVGHKGATISR-IKSETSARINISNNIRGVPERIVYVRGT----- 119
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
KA ++ L+E E G + + + + ++ L++ + +GC++GK G+ + E+
Sbjct: 120 -CDDVAKAYGMIVRALLE---EHGNE-DNGEDIEISINLLIPHHLMGCIIGKRGSRLREI 174
Query: 304 RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
++ + +QLL +S NDR++ I+G + A + ++ L
Sbjct: 175 EDLSAAKLFASPNQLL--LS-NDRILTINGVPDAIHIATFYISQTL 217
Score = 46 (21.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQ 496
EI + E +G+V G++G ++ +++
Sbjct: 334 EIFIDEKFVGNVIGKDGKHINSVKE 358
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 114 (45.2 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 43/154 (27%), Positives = 74/154 (48%)
Query: 213 SEAGAFISVGAT----MPECDERLITVTASEGPES--RYSPAQKAVVLVFSRLIEGTSEK 266
S AGA I G M + ++V S+GPE + S ++ + + + +++ E+
Sbjct: 32 SIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEMLKYFEER 91
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTS-IRIISDQLLKCISEN 325
DF + RL++ + GC++GKGG I E+R G +++ S+ +
Sbjct: 92 DEDF--------DVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQ---ST 140
Query: 326 DRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLN 359
DRVVQ G+ S+V +AV V RD G ++
Sbjct: 141 DRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIH 174
Score = 58 (25.5 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
N + ++ +P+ + G++ G+ G + R+R S
Sbjct: 420 NNSTQVTIPKELAGAIIGKGGGRIRRIRNES 450
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 127 (49.8 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 160
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 161 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 219
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 220 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 252
Score = 46 (21.3 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 270 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 297
Score = 37 (18.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQS 401
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 127 (49.8 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 160
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 161 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 219
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 220 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 252
Score = 46 (21.3 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 270 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 297
Score = 37 (18.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQS 401
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 127 (49.8 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 165
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 166 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 224
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 225 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 257
Score = 46 (21.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 275 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 302
Score = 37 (18.1 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS 406
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 127 (49.8 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 165
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 166 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 224
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 225 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 257
Score = 46 (21.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 275 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 302
Score = 37 (18.1 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS 406
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 127 (49.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 165
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 166 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 224
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 225 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 257
Score = 46 (21.3 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 275 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 302
Score = 37 (18.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS 406
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 127 (49.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 161
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 162 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 220
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 221 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 253
Score = 46 (21.3 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 271 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 298
Score = 37 (18.1 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 378 IVPTGKTGLIIGKGGETIKSISQQS 402
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 127 (49.8 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 165
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 166 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 224
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 225 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 257
Score = 46 (21.3 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 275 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 302
Score = 37 (18.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQS 406
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 129 (50.5 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 40/160 (25%), Positives = 74/160 (46%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q ++G + + +R +++T GPE+ QKA +++
Sbjct: 118 VGLIIGRGGEQINKIQQDSGCKVQIAPDSGGLPDRSVSITG--GPEA----IQKAKMMLD 171
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ G S G +V+ + + G ++GKGG I ++++ G + +I D
Sbjct: 172 DIVSRGRGTPPSFHESTNGSGHMQEMVIPAGKAGLIIGKGGETIKQLQERAGVKMILIQD 231
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
D+ ++I G+ KV+ A V LR+ G
Sbjct: 232 ASQG--PNMDKPLRIIGDPYKVQQAREMVQEILRERDHPG 269
Score = 44 (20.5 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+E+ VP + +G V G +G + +++
Sbjct: 296 IEVPVPRHSVGVVIGRSGEMIKKIQ 320
Score = 37 (18.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 475 VPENVIGSVYGENGSNLLRLRQ 496
+P + G V G G N+ + Q
Sbjct: 409 IPAHKCGLVIGRGGENVKAINQ 430
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 127 (49.8 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 133 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 186
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 187 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 245
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 246 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 278
Score = 46 (21.3 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 296 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 323
Score = 37 (18.1 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 403 IVPTGKTGLIIGKGGETIKSISQQS 427
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 127 (49.8 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 135 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 188
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 189 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 247
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 248 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 280
Score = 46 (21.3 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 298 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 325
Score = 37 (18.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 405 IVPTGKTGLIIGKGGETIKSISQQS 429
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 48/184 (26%), Positives = 83/184 (45%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q + RI + KVG +IGKGG IR LQ +GA I + + G +
Sbjct: 174 QSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVA 233
Query: 244 RYSPAQKAVVLVFSRLIEGTSE----KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
A+K + V + G S +G + G+ + V +++VG ++G+GG
Sbjct: 234 CIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLIIGRGGET 293
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK---DAVYNVTGR-LRDNHFS 355
I M+ +G ++I Q + +R V+ISG+ ++ D + +V + R + +S
Sbjct: 294 IKNMQTRSGARTQLIP-QHAEGDGLKERTVRISGDKMQIDIATDMIKDVMNQNARPSSYS 352
Query: 356 GTLN 359
G N
Sbjct: 353 GGYN 356
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 127 (49.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 152 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 205
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 206 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 264
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 265 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 297
Score = 46 (21.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 315 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 342
Score = 37 (18.1 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 474 IVPENVIGSVYGENGSNLLRLRQVS 498
IVP G + G+ G + + Q S
Sbjct: 422 IVPTGKTGLIIGKGGETIKSISQQS 446
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 112 (44.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 46/166 (27%), Positives = 77/166 (46%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ PE R+++++A E+ +K + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGPE---RILSISADI--ETIGEILKK----IIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
LL++ L G ++G G I + T T+I++ +
Sbjct: 120 DCELRLLIHQSLA------GGIIGVKGAKIKKFGGNTQTTIKLFQE 159
Score = 56 (24.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ +P+++ GS+ G+ G + ++R S
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 393
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 50/216 (23%), Positives = 97/216 (44%)
Query: 154 PSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQS 213
P+SS +AV P A + ++ + + VGA+IGK G I+ L
Sbjct: 377 PASS----NAVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSR 432
Query: 214 EAGAFISVGAT-MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSS 272
A A I + P+ R++ +T PE+++ KA ++ +L E+ F
Sbjct: 433 FASASIKIAPPETPDSKVRMVVITGP--PEAQF----KAQGRIYGKL----KEENF-FGP 481
Query: 273 NKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRV-VQI 331
+ + + + V ++ G ++GKGG ++E++ +T + + DQ EN++V V+I
Sbjct: 482 KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP---DENEQVIVKI 538
Query: 332 SGEFSKVKDA---VYNVTGRLRDNHFSGTLNTARTR 364
G F + A + ++ +++ H G + R
Sbjct: 539 IGHFYASQMAQRKIRDILAQVKQQHQKGQSGQLQAR 574
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 121 (47.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTA 237
+R + V RIL + GAVIGKGG I+AL ++ A +SV ++ PE R+++++A
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSGPE---RILSISA 92
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
E+ +K + L E KG DF LL++ L G ++G G
Sbjct: 93 DI--ETIGEILKK----IIPTLEEYQHYKGSDFDCELRLLIHQSLA------GGIIGVKG 140
Query: 298 TIISEMRKVTGTSIRIISD 316
I E+R+ T T+I++ +
Sbjct: 141 AKIKELRENTQTTIKLFQE 159
Score = 46 (21.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T ++ + +++ GS+ G+ G + ++R S
Sbjct: 365 TTQVTISKDLAGSIIGKGGRRIKQVRHES 393
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 127 (49.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 44/155 (28%), Positives = 73/155 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q E+G I + ER +T + PES Q A L+
Sbjct: 109 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT--PES----VQSAKRLLD 162
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+ +G G G V ++ AS + G ++GKGG I ++++ G + +I D
Sbjct: 163 QIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMIQD 221
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+ D+ ++I+G+ KV+ A V +RD
Sbjct: 222 GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 254
Score = 43 (20.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLR 495
E+ +P +G V G NG + +++
Sbjct: 260 EVPIPRFAVGIVIGRNGEMIKKIQ 283
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 94 (38.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++V ++ G ++GKGG + + + +G +++ Q I+ +RVV +SGE + +
Sbjct: 134 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRK 191
Query: 341 AVYNVTGRLRDNHFSGT-LNTARTRSTSSVLTET---SPYS 377
AV + +++++ SG+ LN + T V SPY+
Sbjct: 192 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYA 232
Score = 67 (28.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITV 235
++L + G++IGKGG I LQ E GA I + + P ER+ +
Sbjct: 12 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 61
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 123 (48.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 44/157 (28%), Positives = 74/157 (47%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPE--CDERLITVTASEGPESRYSPAQKAVVL 254
VG +IG+GG I +Q E+G I + + ER +T + PES Q A L
Sbjct: 109 VGFIIGRGGEQISRIQQESGCKIQIAPALDSGGLPERSCMLTGT--PES----VQSAKRL 162
Query: 255 VFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314
+ + +G G G V ++ AS + G ++GKGG I ++++ G + +I
Sbjct: 163 LDQIVEKGRPAPGFHHGDGPGNAVQEIMIPAS-KAGLVIGKGGETIKQLQERAGVKMVMI 221
Query: 315 SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
D + D+ ++I+G+ KV+ A V +RD
Sbjct: 222 QDGPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 256
Score = 46 (21.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLR 495
N +++ +P +G V G NG + +++
Sbjct: 274 NEGIDVPIPRFAVGIVIGRNGEMIKKIQ 301
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 99 (39.9 bits), Expect = 0.00025, P = 0.00025
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C +R+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPKRIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASN 287
KA ++ +L E S + ++ + V +RLVV ++
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAARRPPVTSRLVVPAS 107
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 128 (50.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 45/180 (25%), Positives = 83/180 (46%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
RT E +R+ + VG +IG+GG I +Q ++G + + ER +++T +
Sbjct: 103 RTSMTE-EYRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGA- 158
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKG 296
PES QKA +++ + G F N N +++ + + G ++GKG
Sbjct: 159 -PES----VQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKG 213
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++++ G + +I D + D+ ++I G+ KV+ A V LR+ G
Sbjct: 214 GETIKQLQERAGVKMILIQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 271
Score = 41 (19.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+++ VP + +G V G +G + +++
Sbjct: 286 IDVPVPRHSVGVVIGRSGEMIKKIQ 310
Score = 37 (18.1 bits), Expect = 0.00074, Sum P(2) = 0.00073
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 475 VPENVIGSVYGENGSNLLRLRQ 496
+P + G V G G N+ + Q
Sbjct: 392 IPTHKCGLVIGRGGENVKAINQ 413
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 128 (50.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 45/180 (25%), Positives = 83/180 (46%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
RT E +R+ + VG +IG+GG I +Q ++G + + ER +++T +
Sbjct: 142 RTSMTE-EYRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGA- 197
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKG 296
PES QKA +++ + G F N N +++ + + G ++GKG
Sbjct: 198 -PES----VQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKG 252
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++++ G + +I D + D+ ++I G+ KV+ A V LR+ G
Sbjct: 253 GETIKQLQERAGVKMILIQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 310
Score = 41 (19.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+++ VP + +G V G +G + +++
Sbjct: 325 IDVPVPRHSVGVVIGRSGEMIKKIQ 349
Score = 37 (18.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 475 VPENVIGSVYGENGSNLLRLRQ 496
+P + G V G G N+ + Q
Sbjct: 431 IPTHKCGLVIGRGGENVKAINQ 452
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 128 (50.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 45/180 (25%), Positives = 83/180 (46%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
RT E +R+ + VG +IG+GG I +Q ++G + + ER +++T +
Sbjct: 143 RTSMTE-EYRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGA- 198
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKG 296
PES QKA +++ + G F N N +++ + + G ++GKG
Sbjct: 199 -PES----VQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKG 253
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++++ G + +I D + D+ ++I G+ KV+ A V LR+ G
Sbjct: 254 GETIKQLQERAGVKMILIQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 311
Score = 41 (19.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+++ VP + +G V G +G + +++
Sbjct: 326 IDVPVPRHSVGVVIGRSGEMIKKIQ 350
Score = 37 (18.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 475 VPENVIGSVYGENGSNLLRLRQ 496
+P + G V G G N+ + Q
Sbjct: 432 IPTHKCGLVIGRGGENVKAINQ 453
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 128 (50.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 45/180 (25%), Positives = 83/180 (46%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
RT E +R+ + VG +IG+GG I +Q ++G + + ER +++T +
Sbjct: 139 RTSMTE-EYRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGA- 194
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKG 296
PES QKA +++ + G F N N +++ + + G ++GKG
Sbjct: 195 -PES----VQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKG 249
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++++ G + +I D + D+ ++I G+ KV+ A V LR+ G
Sbjct: 250 GETIKQLQERAGVKMILIQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 307
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+++ VP + +G V G +G + +++
Sbjct: 322 IDVPVPRHSVGVVIGRSGEMIKKIQ 346
Score = 37 (18.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 475 VPENVIGSVYGENGSNLLRLRQ 496
+P + G V G G N+ + Q
Sbjct: 428 IPTHKCGLVIGRGGENVKAINQ 449
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 128 (50.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 45/180 (25%), Positives = 83/180 (46%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
RT E +R+ + VG +IG+GG I +Q ++G + + ER +++T +
Sbjct: 142 RTSMTE-EYRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGA- 197
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKG 296
PES QKA +++ + G F N N +++ + + G ++GKG
Sbjct: 198 -PES----VQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKG 252
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++++ G + +I D + D+ ++I G+ KV+ A V LR+ G
Sbjct: 253 GETIKQLQERAGVKMILIQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 310
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+++ VP + +G V G +G + +++
Sbjct: 325 IDVPVPRHSVGVVIGRSGEMIKKIQ 349
Score = 37 (18.1 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 475 VPENVIGSVYGENGSNLLRLRQ 496
+P + G V G G N+ + Q
Sbjct: 431 IPTHKCGLVIGRGGENVKAINQ 452
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 128 (50.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 45/180 (25%), Positives = 83/180 (46%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
RT E +R+ + VG +IG+GG I +Q ++G + + ER +++T +
Sbjct: 143 RTSMTE-EYRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGA- 198
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKG 296
PES QKA +++ + G F N N +++ + + G ++GKG
Sbjct: 199 -PES----VQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKG 253
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++++ G + +I D + D+ ++I G+ KV+ A V LR+ G
Sbjct: 254 GETIKQLQERAGVKMILIQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 311
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+++ VP + +G V G +G + +++
Sbjct: 326 IDVPVPRHSVGVVIGRSGEMIKKIQ 350
Score = 37 (18.1 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 475 VPENVIGSVYGENGSNLLRLRQ 496
+P + G V G G N+ + Q
Sbjct: 432 IPTHKCGLVIGRGGENVKAINQ 453
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 128 (50.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 42/163 (25%), Positives = 80/163 (49%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVL-- 254
VG +IG+GG I +Q ++G + + ER +++T S PE+ QKA ++
Sbjct: 220 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGS--PEA----VQKAKLMLD 273
Query: 255 -VFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI 313
+ SR G + D+++ + V +++ + + G ++GKGG I ++++ G +
Sbjct: 274 DIVSRGRGGPPGQFHDYANGQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIF 332
Query: 314 ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
I D + D+ ++I G+ KV+ A V LR+ G
Sbjct: 333 IQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 373
Score = 41 (19.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+++ VP + +G V G +G + +++
Sbjct: 388 IDVPVPRHSVGVVIGRSGEMIKKIQ 412
Score = 37 (18.1 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 475 VPENVIGSVYGENGSNLLRLRQ 496
+P + G V G G N+ + Q
Sbjct: 493 IPTHKCGLVIGRGGENVKAINQ 514
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 125 (49.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 41/163 (25%), Positives = 76/163 (46%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG +IG+GG I +Q ++G + + ER +++T + PES QKA +++
Sbjct: 12 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGA--PES----VQKAKMMLD 65
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI 313
+ G F N N +++ + + G ++GKGG I ++++ G + +
Sbjct: 66 DIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 125
Query: 314 ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
I D + D+ ++I G+ KV+ A V LR+ G
Sbjct: 126 IQDGSQN--TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 166
Score = 41 (19.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLR 495
+++ VP + +G V G +G + +++
Sbjct: 181 IDVPVPRHSVGVVIGRSGEMIKKIQ 205
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 98 (39.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 207 IIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEK 266
+I LQS A IS G+ C ER+ T+T S + AV ++ +L E
Sbjct: 7 LILYLQSSARITISEGS----CPERITTITGST------AAVFHAVSMIAFKLDEDLCAA 56
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
+ + V RLV+ ++Q G L+GK GT I E+R+V G
Sbjct: 57 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
Score = 65 (27.9 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQVS 498
E +VP ++IG V G GS + +RQ+S
Sbjct: 266 EFLVPNDLIGCVIGRQGSKISEIRQMS 292
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 100 (40.3 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 37/134 (27%), Positives = 64/134 (47%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++I K ++ LQ E A I++ C ER+IT+ GP +
Sbjct: 17 LTIRLLMHGKEVGSIIRKSRESVKKLQ-EKSARINISEG--NCPERIITLA---GPTN-- 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARL-VVASNQVGCLLGKGGTIISEMR 304
A+ F+ +I+ E +N + VV ++Q G L+GKG I E+R
Sbjct: 69 -----AIFKAFAMIIDKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIGKG--TIKEIR 121
Query: 305 KVTGTSIRIISDQL 318
+ TG ++ + L
Sbjct: 122 ESTGAQVQAAGNML 135
Score = 59 (25.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T+ E+ +P ++IG + G G+ + +RQ+S
Sbjct: 245 TSHELTLPNDLIGCIIGRQGAKINEIRQMS 274
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 96 (38.9 bits), Expect = 0.00053, P = 0.00053
Identities = 28/104 (26%), Positives = 53/104 (50%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
V+ P+S+ + R +Q +I+ N G +IGKGG ++A+ ++GA++
Sbjct: 5 VAKTEPVSILQPQTTVNPDRIKQ----VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQ 60
Query: 221 VGATMPE---CDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
+ + P+ ER++TV+ PE +KAV L+ ++ E
Sbjct: 61 L-SQKPDGINLQERVVTVSGE--PEQN----RKAVELIIQKIQE 97
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 105 (42.0 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 38/134 (28%), Positives = 65/134 (48%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++I K ++ LQ E GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIRKSRESVKKLQ-EKGARINISEG--NCPERIITLA---GPTN-- 65
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARL-VVASNQVGCLLGKGGTIISEMR 304
A+ F+ +I+ E +N + VV ++Q G L+GKG I E+R
Sbjct: 66 -----AIFKAFAMIIDKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIGKGK--IKEIR 118
Query: 305 KVTGTSIRIISDQL 318
+ TG ++ + L
Sbjct: 119 ESTGAQVQAAGNML 132
Score = 52 (23.4 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVS 498
T+ E+ +P ++IG + G + + +RQ+S
Sbjct: 234 TSHELTLPNDLIGCIIGRQDAKINEIRQMS 263
>UNIPROTKB|H3BND9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 GO:GO:0003723
EMBL:AC068889 EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2
Ensembl:ENST00000550585 Uniprot:H3BND9
Length = 112
Score = 81 (33.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 250 KAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 10 KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 65
Score = 40 (19.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 378 RLKDPASFGVH--SSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
++K+ GV S ++ + P L + HL L S DC P
Sbjct: 59 KIKEIREAGVQWRSHGSLQQNIDLPSLRRS-SHLSLPRSRDCRLPP 103
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 43/183 (23%), Positives = 87/183 (47%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA---TMPECDERLITVTASEGPE 242
+S +IL ++ VGA+IGKGG +R L+++ + + T P ER+ V +
Sbjct: 42 LSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLV------K 95
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKG-LDFSSNKGLLVNA--RLVVASNQVGCLLGKGGTI 299
R + + + ++ E +++G D +K A ++V+ + G ++GK G
Sbjct: 96 GRLNNIMAVIESIQDKIREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGAN 155
Query: 300 ISEMRKVTGTSIRIISDQ-LLKCISENDRVVQIS-GEFSKVKDAVYNVTGRLR-DNHFSG 356
I ++R+ G I++ ++ + +RVV ++ E S + A V ++ D H +
Sbjct: 156 IKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVAHDEASALLQAASRVLEKVASDPHHAS 215
Query: 357 TLN 359
+N
Sbjct: 216 EIN 218
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 43/183 (23%), Positives = 87/183 (47%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA---TMPECDERLITVTASEGPE 242
+S +IL ++ VGA+IGKGG +R L+++ + + T P ER+ V +
Sbjct: 42 LSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLV------K 95
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKG-LDFSSNKGLLVNA--RLVVASNQVGCLLGKGGTI 299
R + + + ++ E +++G D +K A ++V+ + G ++GK G
Sbjct: 96 GRLNNIMAVIESIQDKIREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGAN 155
Query: 300 ISEMRKVTGTSIRIISDQ-LLKCISENDRVVQIS-GEFSKVKDAVYNVTGRLR-DNHFSG 356
I ++R+ G I++ ++ + +RVV ++ E S + A V ++ D H +
Sbjct: 156 IKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVAHDEASALLQAASRVLEKVASDPHHAS 215
Query: 357 TLN 359
+N
Sbjct: 216 EIN 218
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 506 489 0.00082 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 195
No. of states in DFA: 608 (65 KB)
Total size of DFA: 252 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.39u 0.13s 42.52t Elapsed: 00:00:04
Total cpu time: 42.42u 0.13s 42.55t Elapsed: 00:00:04
Start: Fri May 10 20:26:36 2013 End: Fri May 10 20:26:40 2013
WARNINGS ISSUED: 1