Query 010611
Match_columns 506
No_of_seqs 350 out of 1575
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:31:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 6.5E-26 2.2E-30 209.6 14.8 155 185-352 2-157 (163)
2 2jzx_A Poly(RC)-binding protei 99.9 3.4E-26 1.2E-30 210.9 12.4 156 184-351 3-159 (160)
3 2anr_A Neuro-oncological ventr 99.9 1.1E-25 3.8E-30 211.1 12.4 162 184-353 4-177 (178)
4 1j4w_A FUSE binding protein; s 99.9 1.1E-24 3.7E-29 203.8 12.8 158 185-349 2-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 3.7E-24 1.3E-28 197.6 12.7 156 186-352 2-161 (164)
6 3krm_A Insulin-like growth fac 99.8 1.5E-19 5.2E-24 166.8 11.2 119 278-505 3-121 (163)
7 2anr_A Neuro-oncological ventr 99.8 3.1E-19 1.1E-23 167.1 9.7 74 276-352 4-79 (178)
8 2jvz_A KH type-splicing, FAR u 99.8 9.6E-19 3.3E-23 161.2 11.0 73 278-352 2-74 (164)
9 1j4w_A FUSE binding protein; s 99.8 8.3E-19 2.9E-23 163.8 9.9 72 277-352 2-73 (174)
10 2jzx_A Poly(RC)-binding protei 99.7 1.6E-18 5.6E-23 159.4 8.7 123 276-505 3-125 (160)
11 2qnd_A FMR1 protein; KH domain 99.7 7.7E-18 2.6E-22 153.2 12.4 136 185-351 3-142 (144)
12 3n89_A Defective in GERM LINE 99.6 2.7E-15 9.3E-20 155.1 13.3 141 183-351 27-174 (376)
13 2e3u_A PH-DIM2P, hypothetical 99.6 1.2E-15 4.1E-20 147.7 9.3 150 185-353 33-193 (219)
14 2axy_A Poly(RC)-binding protei 99.5 4.4E-14 1.5E-18 113.8 7.0 70 276-351 3-72 (73)
15 2p2r_A Poly(RC)-binding protei 99.5 5.5E-14 1.9E-18 113.9 7.0 72 276-351 3-74 (76)
16 1zzk_A Heterogeneous nuclear r 99.5 1.1E-13 3.8E-18 113.9 8.8 74 275-352 4-77 (82)
17 1dtj_A RNA-binding neurooncolo 99.5 8.6E-14 3E-18 112.6 7.4 73 278-351 3-75 (76)
18 1wvn_A Poly(RC)-binding protei 99.5 9E-14 3.1E-18 114.3 7.5 74 275-352 3-76 (82)
19 1tua_A Hypothetical protein AP 99.5 1.4E-13 4.9E-18 130.4 9.8 145 188-351 6-160 (191)
20 3n89_A Defective in GERM LINE 99.5 2.8E-13 9.5E-18 140.1 12.3 211 82-349 36-259 (376)
21 1j5k_A Heterogeneous nuclear r 99.4 2.5E-13 8.6E-18 113.4 7.1 75 274-352 10-84 (89)
22 1ec6_A RNA-binding protein NOV 99.4 2.3E-13 7.9E-18 113.1 6.3 73 278-353 3-77 (87)
23 2hh2_A KH-type splicing regula 99.4 4.1E-13 1.4E-17 116.0 7.9 73 279-352 8-80 (107)
24 1x4n_A FAR upstream element bi 99.4 7E-13 2.4E-17 111.5 8.4 74 275-352 12-85 (92)
25 2axy_A Poly(RC)-binding protei 99.4 3.8E-13 1.3E-17 108.3 5.7 70 184-261 3-72 (73)
26 2opv_A KHSRP protein; KH domai 99.4 1.6E-12 5.5E-17 107.6 9.0 74 276-351 12-85 (85)
27 2dgr_A Ring finger and KH doma 99.4 4E-13 1.4E-17 111.0 5.1 70 275-351 7-76 (83)
28 2p2r_A Poly(RC)-binding protei 99.3 9.5E-13 3.2E-17 106.6 5.9 71 184-260 3-73 (76)
29 1x4m_A FAR upstream element bi 99.3 1.1E-12 3.9E-17 110.6 6.5 76 275-352 12-87 (94)
30 2qnd_A FMR1 protein; KH domain 99.3 1.6E-12 5.5E-17 118.1 7.9 58 277-343 3-62 (144)
31 1zzk_A Heterogeneous nuclear r 99.3 2.2E-12 7.5E-17 106.0 7.7 72 184-261 5-76 (82)
32 1wvn_A Poly(RC)-binding protei 99.3 1.7E-12 5.9E-17 106.6 6.3 71 184-260 4-74 (82)
33 2hh3_A KH-type splicing regula 99.3 2E-12 6.7E-17 111.6 6.8 71 278-352 11-81 (106)
34 1we8_A Tudor and KH domain con 99.3 2.6E-12 8.8E-17 110.4 7.3 77 275-353 12-88 (104)
35 1j5k_A Heterogeneous nuclear r 99.3 2.7E-12 9.2E-17 107.2 6.0 73 183-261 11-83 (89)
36 1dtj_A RNA-binding neurooncolo 99.2 6.3E-12 2.2E-16 101.5 5.7 68 185-258 2-72 (76)
37 2ctl_A Vigilin; K homology typ 99.2 8.7E-12 3E-16 105.9 6.8 73 277-352 16-88 (97)
38 1x4n_A FAR upstream element bi 99.2 1E-11 3.6E-16 104.3 6.1 71 184-260 13-83 (92)
39 1vig_A Vigilin; RNA-binding pr 99.2 1.3E-11 4.5E-16 98.8 6.3 67 277-349 4-70 (71)
40 2cte_A Vigilin; K homology typ 99.2 1.6E-11 5.5E-16 103.6 5.9 72 275-352 14-85 (94)
41 2e3u_A PH-DIM2P, hypothetical 99.2 2.7E-11 9.3E-16 117.2 8.1 65 277-350 33-102 (219)
42 1x4m_A FAR upstream element bi 99.2 3.8E-11 1.3E-15 101.2 7.8 73 183-261 12-86 (94)
43 1ec6_A RNA-binding protein NOV 99.2 1.6E-11 5.6E-16 101.8 5.3 69 186-260 3-74 (87)
44 2ctm_A Vigilin; K homology typ 99.2 3.1E-11 1.1E-15 102.0 7.1 75 274-353 13-87 (95)
45 2dgr_A Ring finger and KH doma 99.2 3.7E-11 1.3E-15 99.1 6.4 67 183-258 7-73 (83)
46 2opv_A KHSRP protein; KH domai 99.1 5.4E-11 1.8E-15 98.3 7.0 69 183-257 11-81 (85)
47 2hh3_A KH-type splicing regula 99.1 3.4E-11 1.2E-15 103.8 5.7 70 186-261 11-80 (106)
48 2hh2_A KH-type splicing regula 99.1 6.2E-11 2.1E-15 102.3 5.6 69 187-261 8-79 (107)
49 1we8_A Tudor and KH domain con 99.1 9.3E-11 3.2E-15 100.6 6.4 71 183-259 12-84 (104)
50 2ctk_A Vigilin; K homology typ 99.1 1E-10 3.5E-15 100.5 6.3 70 277-352 16-85 (104)
51 1tua_A Hypothetical protein AP 99.1 1.8E-10 6.2E-15 109.1 6.9 64 280-352 6-74 (191)
52 1vig_A Vigilin; RNA-binding pr 99.0 3.7E-10 1.2E-14 90.3 6.3 64 185-256 4-67 (71)
53 2ctl_A Vigilin; K homology typ 98.9 6.2E-10 2.1E-14 94.4 5.6 68 184-257 15-83 (97)
54 2cte_A Vigilin; K homology typ 98.9 4.9E-10 1.7E-14 94.4 4.6 69 183-259 14-82 (94)
55 2ctj_A Vigilin; K homology typ 98.9 9.7E-10 3.3E-14 92.9 5.4 72 275-352 14-86 (95)
56 2ctf_A Vigilin; K homology typ 98.9 2.4E-09 8.4E-14 91.6 7.4 68 277-353 26-94 (102)
57 2ctm_A Vigilin; K homology typ 98.8 3.2E-09 1.1E-13 89.7 5.0 68 183-257 14-81 (95)
58 2ctk_A Vigilin; K homology typ 98.8 3.2E-09 1.1E-13 91.1 5.0 66 185-258 16-81 (104)
59 2ctf_A Vigilin; K homology typ 98.8 4.3E-09 1.5E-13 90.1 4.3 74 131-241 4-78 (102)
60 2cpq_A FragIle X mental retard 98.7 1.4E-08 4.9E-13 84.8 5.9 69 275-352 12-82 (91)
61 2ctj_A Vigilin; K homology typ 98.5 4.6E-08 1.6E-12 82.6 4.4 69 182-258 13-82 (95)
62 2cpq_A FragIle X mental retard 98.4 1.7E-07 5.9E-12 78.3 3.8 52 183-239 12-64 (91)
63 1k1g_A SF1-BO isoform; splicin 98.4 9.2E-07 3.1E-11 78.9 8.2 76 276-351 5-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.3 2.4E-06 8.1E-11 74.9 8.8 76 276-351 10-99 (119)
65 2bl5_A MGC83862 protein, quaki 97.9 5.5E-06 1.9E-10 74.5 4.2 73 278-350 2-100 (140)
66 1k1g_A SF1-BO isoform; splicin 97.9 1.8E-05 6.1E-10 70.5 6.6 40 184-223 5-50 (131)
67 2yqr_A KIAA0907 protein; struc 97.8 4.4E-05 1.5E-09 66.8 7.5 40 184-223 10-56 (119)
68 2bl5_A MGC83862 protein, quaki 97.7 2.6E-05 8.8E-10 70.1 5.2 38 186-223 2-45 (140)
69 3u1k_A Polyribonucleotide nucl 97.6 6.5E-05 2.2E-09 82.9 7.4 64 276-349 565-629 (630)
70 3v69_A Protein filia; RNA-bind 97.5 0.00014 4.9E-09 64.5 6.7 69 279-352 57-125 (140)
71 2cxc_A NUSA; transcription ter 97.4 0.00012 3.9E-09 66.2 4.6 103 187-314 37-139 (144)
72 4aid_A Polyribonucleotide nucl 96.8 0.00071 2.4E-08 75.6 4.2 69 277-355 569-638 (726)
73 3u1k_A Polyribonucleotide nucl 96.7 0.00083 2.8E-08 74.1 4.3 50 184-239 565-614 (630)
74 3v69_A Protein filia; RNA-bind 96.7 0.0022 7.6E-08 56.9 6.0 52 188-240 58-109 (140)
75 2cxc_A NUSA; transcription ter 96.5 0.002 7E-08 58.0 4.5 37 278-314 36-72 (144)
76 2asb_A Transcription elongatio 95.6 0.018 6.3E-07 56.3 6.9 175 96-314 38-220 (251)
77 1k0r_A NUSA; two component arr 95.5 0.022 7.6E-07 58.6 7.4 94 195-314 249-343 (366)
78 4aid_A Polyribonucleotide nucl 93.8 0.011 3.8E-07 66.0 0.0 49 185-239 569-617 (726)
79 1hh2_P NUSA, N utilization sub 93.0 0.087 3E-06 53.9 5.2 94 195-314 245-339 (344)
80 2asb_A Transcription elongatio 93.0 0.12 4.2E-06 50.4 5.9 37 469-505 184-220 (251)
81 3cdi_A Polynucleotide phosphor 93.0 0.034 1.1E-06 62.3 2.2 66 277-352 559-625 (723)
82 1k0r_A NUSA; two component arr 92.6 0.14 4.8E-06 52.7 6.0 37 469-505 307-343 (366)
83 1e3p_A Guanosine pentaphosphat 92.3 0.023 7.8E-07 63.9 -0.4 62 278-349 598-660 (757)
84 3cdi_A Polynucleotide phosphor 83.1 0.23 8E-06 55.5 0.0 49 185-239 559-607 (723)
85 1e3p_A Guanosine pentaphosphat 80.1 0.2 7E-06 56.2 -1.8 47 186-238 598-644 (757)
86 2pt7_G HP1451, hypothetical pr 69.8 2.8 9.4E-05 37.8 3.1 30 187-216 34-63 (152)
87 1wh9_A 40S ribosomal protein S 68.9 2.3 8E-05 35.0 2.2 28 187-214 36-63 (92)
88 1hh2_P NUSA, N utilization sub 66.7 3.1 0.00011 42.4 3.1 37 469-505 303-339 (344)
89 1wh9_A 40S ribosomal protein S 50.3 5.5 0.00019 32.7 1.3 28 469-496 35-62 (92)
90 2pt7_G HP1451, hypothetical pr 43.6 12 0.0004 33.7 2.5 67 279-353 34-100 (152)
91 3j20_C 30S ribosomal protein S 36.8 13 0.00044 35.2 1.7 27 188-214 42-68 (210)
92 3u5c_D RP13, YS3, 40S ribosoma 36.5 13 0.00044 35.9 1.7 29 187-215 45-73 (240)
93 2xzm_C KH domain containing pr 35.0 17 0.00059 35.1 2.3 29 187-215 48-76 (243)
94 3gku_A Probable RNA-binding pr 34.3 15 0.00052 35.1 1.8 32 188-219 94-125 (225)
95 3iz6_B 40S ribosomal protein S 32.9 13 0.00045 35.6 1.1 29 187-215 45-73 (227)
96 3iev_A GTP-binding protein ERA 32.8 21 0.00073 34.9 2.7 38 185-222 239-285 (308)
97 2zkq_c 40S ribosomal protein S 30.1 16 0.00053 35.4 1.1 29 187-215 45-73 (243)
98 3r8n_C 30S ribosomal protein S 29.5 14 0.00048 34.8 0.7 27 188-214 63-89 (206)
99 3i1m_C 30S ribosomal protein S 26.9 16 0.00056 35.0 0.6 27 188-214 64-90 (233)
100 2ba0_A Archeal exosome RNA bin 26.2 93 0.0032 29.4 5.8 58 280-347 138-195 (229)
101 3iev_A GTP-binding protein ERA 25.8 25 0.00086 34.4 1.8 38 276-313 238-284 (308)
102 2vqe_C 30S ribosomal protein S 25.0 24 0.00082 34.0 1.4 26 189-214 65-90 (239)
103 3u5c_D RP13, YS3, 40S ribosoma 24.3 30 0.001 33.3 1.9 29 469-497 44-72 (240)
104 1wf3_A GTP-binding protein; GT 23.8 19 0.00066 35.3 0.5 33 190-222 234-275 (301)
105 3j20_C 30S ribosomal protein S 23.7 26 0.00088 33.1 1.3 27 470-496 41-67 (210)
106 3bbn_C Ribosomal protein S3; s 22.5 21 0.0007 33.9 0.4 28 188-215 72-99 (218)
107 2xzm_C KH domain containing pr 22.0 35 0.0012 32.9 1.9 29 469-497 47-75 (243)
108 3iz6_B 40S ribosomal protein S 21.7 30 0.001 33.1 1.3 28 469-496 44-71 (227)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=6.5e-26 Score=209.63 Aligned_cols=155 Identities=23% Similarity=0.402 Sum_probs=129.1
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCC-CCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhcc
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~-~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~ 263 (506)
+-+++|+||.+.+|.||||+|++||+|+++|||+|++.+. .+++.+|+|+|+|.++. +.+|..++.+.+.+..
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~------v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA------QFKAQGRIYGKLKEEN 75 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH------HHHHHHHHHHHHHHTT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHhccc
Confidence 3488999999999999999999999999999999999875 67899999999997653 5567777776655432
Q ss_pred cccCCCcCCCCCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHH
Q 010611 264 SEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343 (506)
Q Consensus 264 ~~~g~~~~~~~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~ 343 (506)
. +.+......+.+|.||.+++|+||||+|++|++|+++|||+|+|.++..|. ...++.|+|+|++++|++|+.
T Consensus 76 ~-----~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~--~~~~~~v~I~G~~~~v~~A~~ 148 (163)
T 3krm_A 76 F-----FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPD--ENDQVIVKIIGHFYASQMAQR 148 (163)
T ss_dssp S-----SCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCC--TTSEEEEEEEECHHHHHHHHH
T ss_pred c-----cccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCC--CCCceEEEEEeCHHHHHHHHH
Confidence 1 112233457889999999999999999999999999999999998655554 233458999999999999999
Q ss_pred HHHHHhhcc
Q 010611 344 NVTGRLRDN 352 (506)
Q Consensus 344 ~I~~~L~e~ 352 (506)
+|.+++++.
T Consensus 149 ~I~~~i~~~ 157 (163)
T 3krm_A 149 KIRDILAQV 157 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 2
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=3.4e-26 Score=210.92 Aligned_cols=156 Identities=29% Similarity=0.519 Sum_probs=128.5
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhcc
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~ 263 (506)
.+++++|+||.+.+|.||||+|++||+|+++|||+|+|.+ .++.+|.|+|+|..+. +.+|..++.+.+.+..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~--~~~~~r~v~I~G~~~~------v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNA------IFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEEC--CTTTEEEEEEEEEHHH------HHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcC--CCCCceEEEEEeCHHH------HHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999999987 3678999999998543 4566666666554421
Q ss_pred cccCCCc-CCCCCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHH
Q 010611 264 SEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342 (506)
Q Consensus 264 ~~~g~~~-~~~~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~ 342 (506)
. ..... .......++.+|.||.+++|+||||+|++|++|+++|||+|+|.++..|. +.++.|+|+|++++|.+|+
T Consensus 75 ~-~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~v~I~G~~~~v~~A~ 150 (160)
T 2jzx_A 75 S-SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECV 150 (160)
T ss_dssp T-SCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTT---CCEEEEEEEECHHHHHHHH
T ss_pred c-ccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCC---CCceEEEEEcCHHHHHHHH
Confidence 1 11110 01123458999999999999999999999999999999999998655554 6899999999999999999
Q ss_pred HHHHHHhhc
Q 010611 343 YNVTGRLRD 351 (506)
Q Consensus 343 ~~I~~~L~e 351 (506)
.+|.+++.|
T Consensus 151 ~~I~~~i~e 159 (160)
T 2jzx_A 151 KQICVVMLE 159 (160)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999876
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=1.1e-25 Score=211.09 Aligned_cols=162 Identities=22% Similarity=0.393 Sum_probs=127.4
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCC---CCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHh
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~---~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~ 260 (506)
.+++++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|.+++ +.+|..++.+.+.
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~------v~~A~~~I~~~~~ 77 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA------LNAVHGFIAEKIR 77 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH------HHHHHHHHHHHHT
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH------HHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999864 47889999999997553 4566666665544
Q ss_pred hccccc-C------CCc--CCCCCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEE
Q 010611 261 EGTSEK-G------LDF--SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331 (506)
Q Consensus 261 e~~~~~-g------~~~--~~~~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtI 331 (506)
+..... . +.+ ........+.+|+||.+++|+||||+|++|++|+++|||+|+|.++. .+..+.++.|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~--~~~~~~~~~v~I 155 (178)
T 2anr_A 78 EMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP--DGINLQNRVVTV 155 (178)
T ss_dssp CCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------CCEEEEEE
T ss_pred ccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC--CCCCCCceEEEE
Confidence 321100 0 000 00122347899999999999999999999999999999999998331 223367899999
Q ss_pred EeCHHHHHHHHHHHHHHhhccc
Q 010611 332 SGEFSKVKDAVYNVTGRLRDNH 353 (506)
Q Consensus 332 tGt~~~V~~A~~~I~~~L~e~~ 353 (506)
+|++++|.+|+.+|.++|++++
T Consensus 156 ~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 156 SGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp ESSHHHHHHHHHHHHHHHHSCC
T ss_pred EcCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998864
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=1.1e-24 Score=203.76 Aligned_cols=158 Identities=22% Similarity=0.347 Sum_probs=123.4
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhccc
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~~ 264 (506)
..+++|+||.+++|.||||+|++||+|+++|||+|+|.+..+++.+|+|+|+|.++. +.+|..++.+.+.+...
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR------AQHAAEIITDLLRSVQA 75 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH------HHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH------HHHHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999987667889999999998653 45666666554433210
Q ss_pred cc-C--------C-----CcC-CCCCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEE
Q 010611 265 EK-G--------L-----DFS-SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329 (506)
Q Consensus 265 ~~-g--------~-----~~~-~~~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~V 329 (506)
.. + + ++. .......+.+|.||.+++|+||||+|++|++|+++|||+|+|.++. +.+..+.++.|
T Consensus 76 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~~~~~~~~~v 154 (174)
T 1j4w_A 76 GNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-PPNADPNMKLF 154 (174)
T ss_dssp ----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-TTTSCTTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC-CCCCCCCceEE
Confidence 00 0 0 000 0012246889999999999999999999999999999999998433 23455778999
Q ss_pred EEEeCHHHHHHHHHHHHHHh
Q 010611 330 QISGEFSKVKDAVYNVTGRL 349 (506)
Q Consensus 330 tItGt~~~V~~A~~~I~~~L 349 (506)
+|+|++++|.+|+.+|.++|
T Consensus 155 ~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 155 TIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEECCHHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=197.56 Aligned_cols=156 Identities=21% Similarity=0.323 Sum_probs=123.7
Q ss_pred eEEEEEeecccccccccccchHHHHHHhhcCceEEEcCC--CCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhcc
Q 010611 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263 (506)
Q Consensus 186 vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~--~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~ 263 (506)
++++|+||.+++|.||||+|++||+|+++|||+|++.+. .+++.+|.|+|+|.++. +.+|..++.+.+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK------VQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH------HHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHHhcc
Confidence 688999999999999999999999999999999999754 35678999999997553 4567766766544321
Q ss_pred cccCCCcCCC--CCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHH
Q 010611 264 SEKGLDFSSN--KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341 (506)
Q Consensus 264 ~~~g~~~~~~--~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A 341 (506)
..++..... .....+.+|.||.+++|+||||+|++|++|+++|||+|+|.++. ..+.++.|+|+|++++|+.|
T Consensus 76 -~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~----~~~~~~~v~I~G~~~~v~~A 150 (164)
T 2jvz_A 76 -QGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----GTGPEKIAHIMGPPDRCEHA 150 (164)
T ss_dssp -SCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC----TTSSEEEEEEESCHHHHHHH
T ss_pred -CCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC----CCCCcEEEEEEcCHHHHHHH
Confidence 111111100 11134688999999999999999999999999999999998331 22568999999999999999
Q ss_pred HHHHHHHhhcc
Q 010611 342 VYNVTGRLRDN 352 (506)
Q Consensus 342 ~~~I~~~L~e~ 352 (506)
+.+|.+++++.
T Consensus 151 ~~~I~~~i~~~ 161 (164)
T 2jvz_A 151 ARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=166.82 Aligned_cols=119 Identities=24% Similarity=0.424 Sum_probs=101.1
Q ss_pred eEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhccccCCC
Q 010611 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357 (506)
Q Consensus 278 vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~~~~~~ 357 (506)
.+++|+||.+++|.||||+|++|++|+++|||+|+|..+..|. +.+|.|+|+|+++++.+|+.+|.+++.+..+..
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~- 78 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPD---SKVRMVIITGPPEAQFKAQGRIYGKLKEENFFG- 78 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTT---CSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSC-
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCC---CCceEEEEEcCHHHHHHHHHHHHHHHhcccccc-
Confidence 4789999999999999999999999999999999998544444 789999999999999999999999997642100
Q ss_pred ccccccCCCCCccccCCCCCCCCCCCCcCcCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccccCCCC
Q 010611 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGS 437 (506)
Q Consensus 358 ~~~~~~r~~~s~~~~~~py~~~~~p~~~g~~~~~g~~~~~~r~~~~~g~~~~~~s~~~~~p~~p~~~~~~~~~g~~~~~~ 437 (506)
|..
T Consensus 79 ---------------------------------------------------------------~~~-------------- 81 (163)
T 3krm_A 79 ---------------------------------------------------------------PKE-------------- 81 (163)
T ss_dssp ---------------------------------------------------------------SSC--------------
T ss_pred ---------------------------------------------------------------ccc--------------
Confidence 000
Q ss_pred CCCCCCCcCCCCCCCCCcccCCCCccccccceEEEEEeccccccccccCCCchHHHHHhhcCCeEEEe
Q 010611 438 SDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVSCILNVFA 505 (506)
Q Consensus 438 ~d~~~g~~~g~~~~~~g~~~~sg~~~a~vt~~T~eI~VP~~~vG~IIGkgG~~Ik~Irq~SGA~I~I~ 505 (506)
+ ...+.+|.||.+++|+|||++|++|++|++.|||+|.|.
T Consensus 82 -~---------------------------~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~ 121 (163)
T 3krm_A 82 -E---------------------------VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVP 121 (163)
T ss_dssp -C---------------------------CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECC
T ss_pred -C---------------------------CceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEEC
Confidence 0 024779999999999999999999999999999999873
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.78 E-value=3.1e-19 Score=167.13 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=66.6
Q ss_pred ceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEcc--CcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS--DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~--d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.. +..|+ +.+|.|+|+|++++|.+|+.+|.+++++.
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~---~~er~v~I~G~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG---TTERVCLIQGTIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT---SSEEEEEEEECHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC---CCCceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999999983 23444 67999999999999999999999999764
No 8
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.77 E-value=9.6e-19 Score=161.21 Aligned_cols=73 Identities=25% Similarity=0.443 Sum_probs=64.4
Q ss_pred eEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 278 vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
++.+|+||.+++|+||||+|++|++|+++|||+|++.++. .+.+..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~--~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG--SQNTNVDKPLRIIGDPYKVQQACEMVMDILRER 74 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT--TSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC--CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999997432 123367899999999999999999999999763
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.77 E-value=8.3e-19 Score=163.75 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=64.5
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
..+.+|+||.+++|+||||+|++|++|+++|||+|+|..+ .+ +..||.|+|+|++++|.+|+.+|.+++++.
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~ 73 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-DG---TTPERIAQITGPPDRAQHAAEIITDLLRSV 73 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECC-TT---SCSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecC-CC---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999732 12 367899999999999999999999999875
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=159.38 Aligned_cols=123 Identities=21% Similarity=0.402 Sum_probs=100.8
Q ss_pred ceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhccccC
Q 010611 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355 (506)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~~~~ 355 (506)
.+++++|+||.+.+|.||||+|++|++|+++|||+|+|..+ ++.+|.|+|+|++++|.+|+.+|.+++.+....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~ 76 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG------NCPERIITLAGPTNAIFKAFAMIIDKLEEDISS 76 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC------CCCceEEEEEeCHHHHHHHHHHHHHHHHhhccc
Confidence 46789999999999999999999999999999999999732 256899999999999999999999999774210
Q ss_pred CCccccccCCCCCccccCCCCCCCCCCCCcCcCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccccCC
Q 010611 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLR 435 (506)
Q Consensus 356 ~~~~~~~~r~~~s~~~~~~py~~~~~p~~~g~~~~~g~~~~~~r~~~~~g~~~~~~s~~~~~p~~p~~~~~~~~~g~~~~ 435 (506)
. + .. .. .
T Consensus 77 ~-------~-----------------------------------~~---~~---------~------------------- 83 (160)
T 2jzx_A 77 S-------M-----------------------------------TN---ST---------A------------------- 83 (160)
T ss_dssp C-------C-----------------------------------CS---SS---------C-------------------
T ss_pred c-------C-----------------------------------CC---Cc---------c-------------------
Confidence 0 0 00 00 0
Q ss_pred CCCCCCCCCcCCCCCCCCCcccCCCCccccccceEEEEEeccccccccccCCCchHHHHHhhcCCeEEEe
Q 010611 436 GSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQVSCILNVFA 505 (506)
Q Consensus 436 ~~~d~~~g~~~g~~~~~~g~~~~sg~~~a~vt~~T~eI~VP~~~vG~IIGkgG~~Ik~Irq~SGA~I~I~ 505 (506)
.. -...+.++.||.+++|+|||++|.+|++|++.|||+|.|.
T Consensus 84 ----------~~------------------~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~ 125 (160)
T 2jzx_A 84 ----------AS------------------RPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 125 (160)
T ss_dssp ----------CC------------------CCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCC
T ss_pred ----------CC------------------CCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEEC
Confidence 00 0125889999999999999999999999999999999874
No 11
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.74 E-value=7.7e-18 Score=153.24 Aligned_cols=136 Identities=20% Similarity=0.266 Sum_probs=99.2
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEec-cCCCCcCCChHHHHHHHHHHHHhhcc
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA-SEGPESRYSPAQKAVVLVFSRLIEGT 263 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG-~~~~i~~~s~a~~Av~~i~~~i~e~~ 263 (506)
.++.+|+||.+.+|++|||+|++|+.|++++|+.+.... ...++ +.+.| .++ ++..+.. +.+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~---~~~~~-~i~~~~~p~----------~v~~~~~-~l~-- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD---EDTCT-FHIYGEDQD----------AVKKARS-FLE-- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE---TTTTE-EEEEESSHH----------HHHHHHH-HHC--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC---CCchh-eeeccCCHH----------HHHHHHH-hhh--
Confidence 467899999999999999999999999999994433322 12333 44444 222 2222222 221
Q ss_pred cccCCCcCCCCCceeEEEEEeeccccceecccCcchHHhhhhhcCc-eEEEccCcccccCCCCCe--EEEEEeCHHHHHH
Q 010611 264 SEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGT-SIRIISDQLLKCISENDR--VVQISGEFSKVKD 340 (506)
Q Consensus 264 ~~~g~~~~~~~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA-~I~I~~d~~P~~~~s~eR--~VtItGt~~~V~~ 340 (506)
....++.||.+++|++|||+|++|+.|++.||| +|+|..+..+.. ..+++ .|+|+|++++|+.
T Consensus 66 -------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~-~~~~~~~~vtI~G~~~~v~~ 131 (144)
T 2qnd_A 66 -------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV-PQEEGMVPFVFVGTKDSIAN 131 (144)
T ss_dssp -------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC-CCCTTEEEEEEEEEHHHHHH
T ss_pred -------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc-cccCCeeEEEEEeCHHHHHH
Confidence 113889999999999999999999999999997 999983221111 12343 5899999999999
Q ss_pred HHHHHHHHhhc
Q 010611 341 AVYNVTGRLRD 351 (506)
Q Consensus 341 A~~~I~~~L~e 351 (506)
|+.+|.++|.+
T Consensus 132 Ak~li~~~l~~ 142 (144)
T 2qnd_A 132 ATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999965
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.61 E-value=2.7e-15 Score=155.12 Aligned_cols=141 Identities=8% Similarity=0.089 Sum_probs=96.3
Q ss_pred CCeeEEEEEeecccccccccccc--hHHHHHHhhcCceEEEcCCC-----CCCCcceEEEeccCCCCcCCChHHHHHHHH
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGG--TIIRALQSEAGAFISVGATM-----PECDERLITVTASEGPESRYSPAQKAVVLV 255 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgG--s~IK~IreeTGa~I~V~~~~-----p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i 255 (506)
...+|+.+-||...++.|||||| ++|++|+++|||+|++++.. +......|+|+|.+++ +.+|..++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~en------VE~AR~~I 100 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGD------VDRARMLM 100 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHH------HHHHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHH------HHHHHHHH
Confidence 46899999999999999999999 99999999999999998643 1234568999998765 34454444
Q ss_pred HHHHhhcccccCCCcCCCCCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCH
Q 010611 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335 (506)
Q Consensus 256 ~~~i~e~~~~~g~~~~~~~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~ 335 (506)
.+ + ..+++.+.+|...++. ...+..|.+ ++..|++|.+... |.-.+.....|+|+|..
T Consensus 101 ~~-l----------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~--~~~~~~~sd~V~IrG~~ 158 (376)
T 3n89_A 101 RR-N----------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDA--PEKNGIVTTYLRITARE 158 (376)
T ss_dssp HH-S----------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEE--C-----CEEEEEEEEEG
T ss_pred Hh-c----------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCc--ccccCCCCCEEEEEcCh
Confidence 32 1 2356666666643332 122345555 6789999998622 11111235679999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 010611 336 SKVKDAVYNVTGRLRD 351 (506)
Q Consensus 336 ~~V~~A~~~I~~~L~e 351 (506)
.++..|...+..+++.
T Consensus 159 ~nv~~akeA~~~Ll~~ 174 (376)
T 3n89_A 159 KNQHELIEAAKRLNEI 174 (376)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8777666666555543
No 13
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.60 E-value=1.2e-15 Score=147.74 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=107.1
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhccc
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~~ 264 (506)
+-+.++.||.+.+|.|||++|++||.|+++|||+|++.. .++.|+|.+.....+ ...+++|..+|.+.......
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d-~~~i~kA~~~I~~i~rg~~~ 106 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETED-PLAVWKARDIVLAIGRGFSP 106 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCS-HHHHHHHHHHHHHHHTTCCH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCC-HHHHHHHHHHHHHHhccCCc
Confidence 346689999999999999999999999999999999973 467899998652211 12356666666553311111
Q ss_pred ccCCCcCCCCCceeEEEEEee-----------ccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEe
Q 010611 265 EKGLDFSSNKGLLVNARLVVA-----------SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333 (506)
Q Consensus 265 ~~g~~~~~~~~~~vt~~l~VP-----------~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItG 333 (506)
+.+...-. .....-.+.++ ...+|+||||+|++|+.|++.|||+|.|. ++.|+|.|
T Consensus 107 e~g~~ll~--dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~-----------~~~v~i~G 173 (219)
T 2e3u_A 107 ERAFRLLN--EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY-----------GKTVAIIG 173 (219)
T ss_dssp HHHGGGGS--TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-----------TTEEEEEE
T ss_pred cccceecc--CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-----------CeEEEEEe
Confidence 10000000 11111112222 23689999999999999999999999994 35699999
Q ss_pred CHHHHHHHHHHHHHHhhccc
Q 010611 334 EFSKVKDAVYNVTGRLRDNH 353 (506)
Q Consensus 334 t~~~V~~A~~~I~~~L~e~~ 353 (506)
++++++.|..+|.++|...+
T Consensus 174 ~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 174 NPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999996644
No 14
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.48 E-value=4.4e-14 Score=113.80 Aligned_cols=70 Identities=23% Similarity=0.491 Sum_probs=64.6
Q ss_pred ceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhc
Q 010611 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (506)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e 351 (506)
..++++|+||.+++|+||||+|++|++|+++|||+|+|.++ +..+|.|+|+|+++++.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999743 25689999999999999999999999976
No 15
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.47 E-value=5.5e-14 Score=113.89 Aligned_cols=72 Identities=28% Similarity=0.557 Sum_probs=65.4
Q ss_pred ceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhc
Q 010611 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (506)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e 351 (506)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+ . +.++.+|.|+|+|+++++.+|+.+|.+++++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~-~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN-P---VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC-C---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC-C---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999999973 2 2347899999999999999999999999975
No 16
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.47 E-value=1.1e-13 Score=113.86 Aligned_cols=74 Identities=26% Similarity=0.581 Sum_probs=66.4
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.++ .| ++.+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC-CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999732 23 367899999999999999999999999874
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.46 E-value=8.6e-14 Score=112.55 Aligned_cols=73 Identities=29% Similarity=0.449 Sum_probs=63.4
Q ss_pred eEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhc
Q 010611 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (506)
Q Consensus 278 vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e 351 (506)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.++..+ +.++.+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF-LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC-STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC-CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999843111 1236789999999999999999999999865
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=9e-14 Score=114.32 Aligned_cols=74 Identities=28% Similarity=0.570 Sum_probs=65.4
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
+..++.+|.||.+++|+||||+|++|++|+++|||+|+|.++ +.++.+|.|+|+|+++++++|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999999999999999999732 23478999999999999999999999999775
No 19
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.46 E-value=1.4e-13 Score=130.38 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=103.4
Q ss_pred EEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhcccccC
Q 010611 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKG 267 (506)
Q Consensus 188 lrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~~~~g 267 (506)
++++||.+.+|.|||++|++++.|++.+|++|.+. ..++.|+|.......+ ...+++|...|.+-...-..+..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~d-p~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIP-PVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSC-HHHHHHHHHHHHHHHHTCCHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCC-HHHHHHHHHHHHHHHcCCCHHHh
Confidence 58999999999999999999999999999999997 3688899984432211 12355666555432211000000
Q ss_pred CCcCCCCCceeEEEEEee----------ccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHH
Q 010611 268 LDFSSNKGLLVNARLVVA----------SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337 (506)
Q Consensus 268 ~~~~~~~~~~vt~~l~VP----------~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~ 337 (506)
+.. . ......-.+.++ ...+|+||||+|.+|+.|++.|||+|.|. ++.|.|.|++++
T Consensus 80 ~~L-l-~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~-----------~~~v~i~G~~~~ 146 (191)
T 1tua_A 80 FRL-L-EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG-----------EYEVAIIGDYER 146 (191)
T ss_dssp GGG-G-STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC-----------SSEEEEEEEHHH
T ss_pred hhc-c-cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc-----------CCEEEEEeChHH
Confidence 000 0 111122223243 23689999999999999999999999994 347999999999
Q ss_pred HHHHHHHHHHHhhc
Q 010611 338 VKDAVYNVTGRLRD 351 (506)
Q Consensus 338 V~~A~~~I~~~L~e 351 (506)
++.|...|.++|..
T Consensus 147 i~~Ar~~i~~li~g 160 (191)
T 1tua_A 147 AMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999954
No 20
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.45 E-value=2.8e-13 Score=140.15 Aligned_cols=211 Identities=10% Similarity=-0.004 Sum_probs=147.4
Q ss_pred chHHHHHHHhhcCc--cccccccccccCCCCCCCCcceeeccCCC-------CceeeEeeccCchhHHHHhhhccccCCC
Q 010611 82 VPQEILWRSLESGP--QEILRRPLEVFAPESSHRSSEALSIETQH-------RLFGAVSQEILPDLHVDILSQRNSVLTT 152 (506)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~inis~~~-------~PeRivti~g~~~~i~~af~~i~~~l~~ 152 (506)
+++.....-|-+|+ .+|.+-+-+.-- .|.++|.+ .....|+|+|..+.+.+|..+|...+
T Consensus 36 Ip~~~Hs~IIGkgG~~sNIkkImeEtgv---------~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~-- 104 (376)
T 3n89_A 36 FESQYYSLMTSDNGDHENVASIMAETNT---------LIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC-- 104 (376)
T ss_dssp CCGGGHHHHHSCCSSSCSHHHHHHHHTC---------EEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC--
T ss_pred EchhhhhhhccCCChHHHHHHHHHHhCC---------eEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC--
Confidence 46677788899999 999999888755 88888876 24568999999999999999986422
Q ss_pred CCCCCCCcCCCCCCCCccccccccccccccCCeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCC--CCCCc
Q 010611 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM--PECDE 230 (506)
Q Consensus 153 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~--p~s~e 230 (506)
++++.+-+|...++. ...+..|.+ ++..+++|.+.... .+...
T Consensus 105 --------------------------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~s 149 (376)
T 3n89_A 105 --------------------------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVT 149 (376)
T ss_dssp --------------------------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CE
T ss_pred --------------------------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCC
Confidence 334444455433322 122344555 67899999985431 11235
Q ss_pred ceEEEeccCCCCcCCChHHHHHHHHHHHHhhcccccCCCcCCCCCceeEEEEEeeccccceecccCc--chHHhhhhhcC
Q 010611 231 RLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG--TIISEMRKVTG 308 (506)
Q Consensus 231 RvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~~~~g~~~~~~~~~~vt~~l~VP~~~vG~IIGkgG--~~IkeIr~~TG 308 (506)
..|+|+|.+.+++ .+.+|+..+++.+.+.. ......++..+.|+..++..||||+| ..|++|+++||
T Consensus 150 d~V~IrG~~~nv~---~akeA~~~Ll~~l~~~e--------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTG 218 (376)
T 3n89_A 150 TYLRITAREKNQH---ELIEAAKRLNEILFRES--------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETT 218 (376)
T ss_dssp EEEEEEEEGGGHH---HHHHHHHHHHHHHCC----------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHT
T ss_pred CEEEEEcChhhHH---HHHHHHHHHHHHHHhhh--------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhC
Confidence 6799999887532 34456655655543320 01234689999999999999999999 56799999999
Q ss_pred ceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHh
Q 010611 309 TSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349 (506)
Q Consensus 309 A~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L 349 (506)
|+|.++....+.........|+|+|+.++|.+|+.+|.++|
T Consensus 219 v~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 219 TIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp CEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred CEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 99999832211111123467999999999999999999988
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.41 E-value=2.5e-13 Score=113.45 Aligned_cols=75 Identities=25% Similarity=0.571 Sum_probs=67.2
Q ss_pred CCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
....++.+|.||.+++|+||||+|++|++|+++|||+|+|.+ ..| ++.+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~-~~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE-PLE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS-CCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC-CCC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999999999999973 223 367899999999999999999999999874
No 22
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=2.3e-13 Score=113.09 Aligned_cols=73 Identities=30% Similarity=0.481 Sum_probs=65.3
Q ss_pred eEEEEEeeccccceecccCcchHHhhhhhcCceEEEccC--cccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhccc
Q 010611 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD--QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (506)
Q Consensus 278 vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d--~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~~ 353 (506)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.++ ..| ++.+|.|+|+|+++++..|+.+|.+++.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~---g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---GTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBST---TSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999843 233 3688999999999999999999999997753
No 23
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.1e-13 Score=116.00 Aligned_cols=73 Identities=15% Similarity=0.287 Sum_probs=64.6
Q ss_pred EEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 279 t~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.++..+ ..+..+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999999854322 23357899999999999999999999999764
No 24
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.39 E-value=7e-13 Score=111.46 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=66.4
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|..+. .+..+|.|+|+|++++|++|+.+|.+++++.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS----GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999998431 2367899999999999999999999999874
No 25
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.37 E-value=3.8e-13 Score=108.27 Aligned_cols=70 Identities=30% Similarity=0.596 Sum_probs=60.4
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhh
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e 261 (506)
.+++++|+||.+.+|.||||||++||+|+++|||+|+|.+. ++.+|+|+|+|.++. +.+|..++.+.+.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~------v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA------IFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHH------HHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHH------HHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999873 678999999998653 56777777766543
No 26
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=107.57 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=65.1
Q ss_pred ceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhc
Q 010611 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (506)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e 351 (506)
.....+|.||.+++|+||||+|++|++|+++|||+|.|.++..+ ..+.+|.|+|+|+++++++|+.+|.++++|
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999854321 236799999999999999999999998864
No 27
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=110.97 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=62.9
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e 351 (506)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|++. ..++.|+|+|++++|++|+++|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 456889999999999999999999999999999999999732 2478999999999999999999998753
No 28
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.34 E-value=9.5e-13 Score=106.58 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=61.8
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHh
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~ 260 (506)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+++.+|.|+|+|.++. +.+|..++.+.+.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~------v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS------ISLAQYLINVRLS 73 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHH------HHHHHHHHHHHHT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHH------HHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999998778889999999998653 5567777766543
No 29
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.33 E-value=1.1e-12 Score=110.59 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=66.8
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.++..+ ....+|.|+|+|++++|++|+.+|.+++++.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ--NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC--SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 456899999999999999999999999999999999999844321 1247899999999999999999999999764
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.33 E-value=1.6e-12 Score=118.06 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=45.6
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhhcCceEEEc--cCcccccCCCCCeEEEEEeCHHHHHHHHH
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVY 343 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~--~d~~P~~~~s~eR~VtItGt~~~V~~A~~ 343 (506)
.++.+++||.+.+|.+||++|++|+.|++++| |.+. .+ ..++.+...++++.|.+|..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~-------~~~~~i~~~~~p~~v~~~~~ 62 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE-------DTCTFHIYGEDQDAVKKARS 62 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET-------TTTEEEEEESSHHHHHHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC-------CchheeeccCCHHHHHHHHH
Confidence 46789999999999999999999999999999 5443 21 34455555568999988854
No 31
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.33 E-value=2.2e-12 Score=106.04 Aligned_cols=72 Identities=26% Similarity=0.500 Sum_probs=61.7
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhh
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e 261 (506)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+++.+|.|+|+|.++. +.+|..++.+.+.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~------v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ------IQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHH------HHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHH------HHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999998777889999999997653 55676666665443
No 32
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=1.7e-12 Score=106.63 Aligned_cols=71 Identities=24% Similarity=0.411 Sum_probs=61.6
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHh
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~ 260 (506)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.+..+++.+|.|+|+|.++. +.+|..++.+.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAAS------ISLAQYLINARLS 74 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHH------HHHHHHHHHHHTC
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999998778889999999998653 5667777766543
No 33
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=2e-12 Score=111.62 Aligned_cols=71 Identities=18% Similarity=0.357 Sum_probs=63.4
Q ss_pred eEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 278 vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
.+.+|.||.+++|+||||+|++||+|+++|||+|+|.++. ..+.||.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----GTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC----SSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC----CCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999997432 2356899999999999999999999999774
No 34
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.31 E-value=2.6e-12 Score=110.40 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=66.5
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhccc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~~ 353 (506)
....+.+|.||.+++|+||||+|++|++|+++|||+|+|.++.. . ..+.++.|+|+|+.+++++|+.+|.+++.+.+
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~-~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G-TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C-SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C-CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 35678999999999999999999999999999999999983211 1 12368999999999999999999999997754
No 35
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.29 E-value=2.7e-12 Score=107.18 Aligned_cols=73 Identities=26% Similarity=0.489 Sum_probs=63.0
Q ss_pred CCeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhh
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e 261 (506)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.+..+++.+|.|+|+|.++. +++|..++.+.+.+
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~------v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ------IQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHH------HHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHH------HHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999998778889999999998654 55677666665443
No 36
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.24 E-value=6.3e-12 Score=101.51 Aligned_cols=68 Identities=29% Similarity=0.463 Sum_probs=57.5
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCC---CCCCCcceEEEeccCCCCcCCChHHHHHHHHHHH
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSR 258 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~---~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~ 258 (506)
..+++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .+++.+|.|+|+|.++. +.+|..++.+.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~------v~~A~~~I~~~ 72 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAA------TQAAQYLISQR 72 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHH------HHHHHHHHHHH
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHH------HHHHHHHHHHH
Confidence 3678999999999999999999999999999999999864 46788999999998553 45666666554
No 37
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.24 E-value=8.7e-12 Score=105.86 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=64.6
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
..+..|.||.+++|.||||+|++|++|+++|||+|.|+++..|. ..+|.|+|+|+.+++.+|+.+|..++.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~---~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN---QPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS---SCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC---CCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998443222 46899999999999999999999998763
No 38
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.22 E-value=1e-11 Score=104.25 Aligned_cols=71 Identities=24% Similarity=0.287 Sum_probs=61.1
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHh
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~ 260 (506)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.+..++..+|.|+|+|.++. +.+|..+|.+.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~------v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES------VQSAKRLLDQIVE 83 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHH------HHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHH------HHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999998767788999999998653 4567666665443
No 39
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.22 E-value=1.3e-11 Score=98.76 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=60.1
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHh
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L 349 (506)
..+..|.||.+++|.|||++|++|++|+++|||+|.|+.+. ..+|.|+|+|+.+++++|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999997431 35789999999999999999998764
No 40
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=1.6e-11 Score=103.56 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=64.1
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
...++.+|.||.+++|.|||++|++|++|+++|||+|.|+... ..++.|+|+|+++++.+|+.+|..++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 3568999999999999999999999999999999999997321 24678999999999999999999999775
No 41
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.19 E-value=2.7e-11 Score=117.23 Aligned_cols=65 Identities=25% Similarity=0.185 Sum_probs=57.7
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeC-----HHHHHHHHHHHHHHhh
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-----FSKVKDAVYNVTGRLR 350 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt-----~~~V~~A~~~I~~~L~ 350 (506)
+...++.||.+.+|.|||++|++|+.|+++|||+|+|. ..++.|+|.|+ ++++++|..+|..+.+
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~---------~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID---------SETGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC---------TTTCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 34679999999999999999999999999999999995 23567899886 6999999999999884
No 42
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.18 E-value=3.8e-11 Score=101.18 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=61.1
Q ss_pred CCeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCC--CCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHh
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM--PECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~--p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~ 260 (506)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.+.. ....+|.|+|+|.++. +.+|..+|.+.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYK------VQQAKEMVLELIR 85 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTT------HHHHHHHHHHHHC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHH------HHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999998752 2457999999997765 5677777766554
Q ss_pred h
Q 010611 261 E 261 (506)
Q Consensus 261 e 261 (506)
+
T Consensus 86 ~ 86 (94)
T 1x4m_A 86 D 86 (94)
T ss_dssp C
T ss_pred c
Confidence 3
No 43
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=1.6e-11 Score=101.85 Aligned_cols=69 Identities=30% Similarity=0.463 Sum_probs=58.5
Q ss_pred eEEEEEeecccccccccccchHHHHHHhhcCceEEEcCC---CCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHh
Q 010611 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (506)
Q Consensus 186 vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~---~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~ 260 (506)
++++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .+++.+|.|+|+|+++. +..|..++.+.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~------v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAA------TQAAQYLISQRVT 74 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHH------HHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999864 46788999999998653 4566666665543
No 44
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=3.1e-11 Score=102.04 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=66.2
Q ss_pred CCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhccc
Q 010611 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (506)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~~ 353 (506)
....++.+|.||.+++|.|||++|++|++|+++|||+|+|+.+. ...++.|+|+|++++|++|+.+|..++++..
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-----~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-----APDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-----CSCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-----CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999997331 1357899999999999999999999998764
No 45
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=3.7e-11 Score=99.14 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=57.2
Q ss_pred CCeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHH
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSR 258 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~ 258 (506)
...++++|.||.+++|.||||+|++||+|+++|||+|++.. ..++|+|+|+|.++. +++|..+|.+.
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~---~~~~~~v~ItG~~e~------v~~A~~~I~~~ 73 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPG---RDKEPVFAVTGMPEN------VDRAREEIEAH 73 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCC---SSSCCEEEEEECTTT------HHHHHHHHHHH
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecC---CCCCCeEEEEcCHHH------HHHHHHHHHHH
Confidence 35689999999999999999999999999999999999974 234799999999876 56777777664
No 46
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.15 E-value=5.4e-11 Score=98.34 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=56.9
Q ss_pred CCeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCC--CCCCCcceEEEeccCCCCcCCChHHHHHHHHHH
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPECDERLITVTASEGPESRYSPAQKAVVLVFS 257 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~--~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~ 257 (506)
....+.+|.||.+++|.||||+|++||+|+++|||+|+|.+. .+.+.+|.|+|+|.++. +.+|..++..
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~------v~~A~~~I~~ 81 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK------VQQACEMVMD 81 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHH------HHHHHHHHHH
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHH------HHHHHHHHHH
Confidence 456788999999999999999999999999999999999875 24678999999996543 4455555544
No 47
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=3.4e-11 Score=103.83 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=58.5
Q ss_pred eEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhh
Q 010611 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (506)
Q Consensus 186 vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e 261 (506)
-+++|+||.+++|.||||+|++||+|+++|||+|+|.++.+++.+|.|+|+|+++. +.+|..+|.+.+.+
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~------v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDR------CEHAARIINDLLQS 80 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHH------HHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHH------HHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999987667778999999998553 45666666654443
No 48
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=102.31 Aligned_cols=69 Identities=22% Similarity=0.427 Sum_probs=57.3
Q ss_pred EEEEEeecccccccccccchHHHHHHhhcCceEEEcCCC---CCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhh
Q 010611 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261 (506)
Q Consensus 187 tlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~---p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e 261 (506)
+++|+||.+++|.||||+|++||+|+++|||+|+|.+.. .+..+|.|+|+|+.+. +.+|+.+|.+.+.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~------v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQ------IDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHH------HHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHH------HHHHHHHHHHHHhc
Confidence 778999999999999999999999999999999998752 2457899999997653 55677777665443
No 49
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.10 E-value=9.3e-11 Score=100.64 Aligned_cols=71 Identities=24% Similarity=0.396 Sum_probs=58.4
Q ss_pred CCeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCC--CCcceEEEeccCCCCcCCChHHHHHHHHHHHH
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE--CDERLITVTASEGPESRYSPAQKAVVLVFSRL 259 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~--s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i 259 (506)
..+++++|+||.+++|.||||+|++||+|+++|||+|+|.+...+ ..+|.|+|+|..+. +.+|..+|...+
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~------v~~A~~~I~~~i 84 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE------VAAAKHLILEKV 84 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHH------HHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHH------HHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999875332 36899999998663 456666665544
No 50
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=1e-10 Score=100.48 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=62.5
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
+.+..|.||.+++|.|||+||++|++|+++|||+|.|+.+. ...+.|+|+|+.+++++|+.+|..++++.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 47899999999999999999999999999999999997431 23468999999999999999999998764
No 51
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.05 E-value=1.8e-10 Score=109.08 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=58.4
Q ss_pred EEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEE-----eCHHHHHHHHHHHHHHhhcc
Q 010611 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS-----GEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 280 ~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtIt-----Gt~~~V~~A~~~I~~~L~e~ 352 (506)
.++.||.+.+|.|||++|++++.|++.+|++|++. ..++.|+|. |++.++.+|..+|..+.+..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id---------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD---------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE---------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE---------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999995 347788998 99999999999999988653
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.01 E-value=3.7e-10 Score=90.29 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=52.9
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHH
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~ 256 (506)
..+..|.||.+++|.||||||++||+|+++|||+|++++ .+..+|.|+|+|..+. +.+|..++.
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~--~g~~~~~V~I~G~~~~------v~~A~~~I~ 67 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP--DSEKSNLIRIEGDPQG------VQQAKRELL 67 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCC--CCSSSEEEEEEESSHH------HHHHHHHHH
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECC--CCCcccEEEEEcCHHH------HHHHHHHHH
Confidence 467889999999999999999999999999999999986 3447789999998542 445554443
No 53
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=6.2e-10 Score=94.39 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=55.0
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCC-CCCCCcceEEEeccCCCCcCCChHHHHHHHHHH
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGPESRYSPAQKAVVLVFS 257 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~-~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~ 257 (506)
..+++.|.||.+.+|.||||+|++||+|+++|||+|+|++. .++..+|.|+|+|..+. +..|..+|..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~------v~~A~~~I~~ 83 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKN------TEAARDAILR 83 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHH------HHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHH------HHHHHHHHHH
Confidence 34789999999999999999999999999999999999864 34457899999997543 3445544444
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.94 E-value=4.9e-10 Score=94.43 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHH
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRL 259 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i 259 (506)
+..++.+|.||.+++|.||||||++||+|+++|||+|+|++ ++..++.|+|+|.++. +.+|..++...+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~--~~~~~~~V~I~G~~e~------v~~A~~~I~~i~ 82 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPR--PDDPSNQIKITGTKEG------IEKARHEVLLIS 82 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCC--TTSSCCEEEEEECHHH------HHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCC--CCCCCCeEEEEECHHH------HHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999975 2344689999998543 456666665543
No 55
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.91 E-value=9.7e-10 Score=92.88 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=64.2
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhc-CceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVT-GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~T-GA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
...++..|.||.++++.|||++|++|++|+++| ||+|.|+.+ ++..+.|+|+|+.++|++|+.+|..++.+.
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 456789999999999999999999999999999 999999743 245678999999999999999999999764
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.90 E-value=2.4e-09 Score=91.55 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=61.0
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhh-cCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhccc
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKV-TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~-TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~~ 353 (506)
.++.+|.||..+++.|||++|++|++|+++ ++++|.|++ .++.|+|+|+++.|.+|+.+|..++++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~---------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE---------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS---------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC---------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999996 599999863 35689999999999999999999997753
No 57
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.81 E-value=3.2e-09 Score=89.68 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=54.8
Q ss_pred CCeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHH
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~ 257 (506)
...+++.|.||.+++|.|||++|++||+|+++|||+|+|++.- ...+|.|+|+|.++. +.+|..++..
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~------v~~A~~~I~~ 81 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPEN------VEEAIDHILN 81 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHH------HHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHH------HHHHHHHHHH
Confidence 4578999999999999999999999999999999999997531 234789999998643 4455555544
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.80 E-value=3.2e-09 Score=91.13 Aligned_cols=66 Identities=27% Similarity=0.324 Sum_probs=53.8
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHH
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSR 258 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~ 258 (506)
+.+..|.||.+++|.|||+||++||+|+++|||+|+|++ .+...+.|+|+|..+. +.+|..++...
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~--~g~~~~~V~I~G~~e~------v~~A~~~I~~i 81 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPA--PELQSDIIAITGLAAN------LDRAKAGLLER 81 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCC--TTTTCCEEEEEECHHH------HHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecC--CCCCcceEEEEcCHHH------HHHHHHHHHHH
Confidence 578899999999999999999999999999999999986 3334579999998543 44555555543
No 59
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.76 E-value=4.3e-09 Score=90.05 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=61.0
Q ss_pred eeccCchhHHHHhhhccccCCCCCCCCCCcCCCCCCCCccccccccccccccCCeeEEEEEeecccccccccccchHHHH
Q 010611 131 SQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRA 210 (506)
Q Consensus 131 ti~g~~~~i~~af~~i~~~l~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~vtlrllIP~~~vG~IIGKgGs~IK~ 210 (506)
.++|+.+++.+|+.++..++ ...++.+|.||.+.++.|||++|++||+
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~--------------------------------~~~~t~~i~vp~~~h~~IIG~~G~~Ik~ 51 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKA--------------------------------NSFTVSSVAAPSWLHRFIIGKKGQNLAK 51 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCC--------------------------------CCCEEEEEECCSTTHHHHHTTTTCHHHH
T ss_pred ccCcCHHHHHHHHHHHHHHh--------------------------------cCeEEEEEEeCHHHHhhhcCCCCccHHH
Confidence 57888888888888874221 1127889999999999999999999999
Q ss_pred HHhh-cCceEEEcCCCCCCCcceEEEeccCCC
Q 010611 211 LQSE-AGAFISVGATMPECDERLITVTASEGP 241 (506)
Q Consensus 211 Iree-TGa~I~V~~~~p~s~eRvVtIsG~~~~ 241 (506)
|+++ ++++|+|++ .++.|+|.|.++.
T Consensus 52 i~~~~~~v~I~fp~-----~~~~ItI~G~~~~ 78 (102)
T 2ctf_A 52 ITQQMPKVHIEFTE-----GEDKITLEGPTED 78 (102)
T ss_dssp HHHHCSSSEEEECS-----SSCEEEEEECHHH
T ss_pred HHHHcCCcEEEeCC-----CCCEEEEECCHHH
Confidence 9997 599999975 5789999998764
No 60
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.71 E-value=1.4e-08 Score=84.84 Aligned_cols=69 Identities=25% Similarity=0.260 Sum_probs=59.9
Q ss_pred CceeEEEEEeeccccceecccCcchHHhhhhhcCce-EEEccCcccccCCCCCeEEEEEe-CHHHHHHHHHHHHHHhhcc
Q 010611 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTS-IRIISDQLLKCISENDRVVQISG-EFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~-I~I~~d~~P~~~~s~eR~VtItG-t~~~V~~A~~~I~~~L~e~ 352 (506)
...+...|.||.+++|.+||++|++|++|+++|||+ |.|. ..+..|+|.| +.+++++|+.+|..+-+..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~---------eddG~V~I~g~~~ea~~~A~~~I~~ie~~~ 82 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD---------EDTGTFRIYGESADAVKKARGFLEFVEDFI 82 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHSCCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE---------cCCCEEEEEECCHHHHHHHHHHHHhhheEE
Confidence 456788999999999999999999999999999998 9995 2357899999 8999999999987665443
No 61
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.54 E-value=4.6e-08 Score=82.57 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=56.0
Q ss_pred cCCeeEEEEEeecccccccccccchHHHHHHhhc-CceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHH
Q 010611 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEA-GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSR 258 (506)
Q Consensus 182 ~~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeT-Ga~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~ 258 (506)
....++..|.||.++++.|||++|++||+|+++| ||+|++++ .++..+.|+|+|.... +.+|..++...
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~--~g~~~~~V~I~G~~~~------v~~A~~~I~~i 82 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV--EGSGSDTVVIRGPSSD------VEKAKKQLLHL 82 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC--TTTTCCEEEEESCHHH------HHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC--CCCCcceEEEEcCHHH------HHHHHHHHHHH
Confidence 3456788999999999999999999999999999 99999986 4556778999997542 44555555543
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.38 E-value=1.7e-07 Score=78.28 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=46.2
Q ss_pred CCeeEEEEEeecccccccccccchHHHHHHhhcCce-EEEcCCCCCCCcceEEEeccC
Q 010611 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAF-ISVGATMPECDERLITVTASE 239 (506)
Q Consensus 183 ~~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~-I~V~~~~p~s~eRvVtIsG~~ 239 (506)
...+...|.||.+++|.|||++|++||+|+++|||+ |.+.+ ++..|+|.|..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~ 64 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGES 64 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESS
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECC
Confidence 456888899999999999999999999999999998 99974 35889999953
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.36 E-value=9.2e-07 Score=78.86 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=61.1
Q ss_pred ceeEEEEEeecc------ccceecccCcchHHhhhhhcCceEEEccCc-c-----------cccCCCCCeEEEEEe-CHH
Q 010611 276 LLVNARLVVASN------QVGCLLGKGGTIISEMRKVTGTSIRIISDQ-L-----------LKCISENDRVVQISG-EFS 336 (506)
Q Consensus 276 ~~vt~~l~VP~~------~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~-~-----------P~~~~s~eR~VtItG-t~~ 336 (506)
..++.+|.||.+ ++|.|||.+|.+||+|+++|||+|.|.... . +......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457889999987 899999999999999999999999997211 0 000112356799999 688
Q ss_pred HHHHHHHHHHHHhhc
Q 010611 337 KVKDAVYNVTGRLRD 351 (506)
Q Consensus 337 ~V~~A~~~I~~~L~e 351 (506)
++.+|+.+|..+|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=2.4e-06 Score=74.93 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=58.5
Q ss_pred ceeEEEEEeecc-------ccceecccCcchHHhhhhhcCceEEEccCcc------cccCCCCCeEEEEEe-CHHHHHHH
Q 010611 276 LLVNARLVVASN-------QVGCLLGKGGTIISEMRKVTGTSIRIISDQL------LKCISENDRVVQISG-EFSKVKDA 341 (506)
Q Consensus 276 ~~vt~~l~VP~~-------~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~------P~~~~s~eR~VtItG-t~~~V~~A 341 (506)
...+.+|+||-+ ++|.|||++|.+||+|+++|||+|.|..... ...+...+-.|.|.+ +.+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 456778888864 7899999999999999999999999962110 000112344688886 68999999
Q ss_pred HHHHHHHhhc
Q 010611 342 VYNVTGRLRD 351 (506)
Q Consensus 342 ~~~I~~~L~e 351 (506)
+.+|.++|.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999965
No 65
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.93 E-value=5.5e-06 Score=74.49 Aligned_cols=73 Identities=27% Similarity=0.272 Sum_probs=54.4
Q ss_pred eEEEEEeecc------ccceecccCcchHHhhhhhcCceEEEccCc-------------ccccC-CCCCeEEEEEeC-HH
Q 010611 278 VNARLVVASN------QVGCLLGKGGTIISEMRKVTGTSIRIISDQ-------------LLKCI-SENDRVVQISGE-FS 336 (506)
Q Consensus 278 vt~~l~VP~~------~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~-------------~P~~~-~s~eR~VtItGt-~~ 336 (506)
++.+++||.+ ++|.|||.+|.++|+|+++|||+|.|-... .|..+ ...+-.|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4668888854 599999999999999999999999998321 01110 122336889984 32
Q ss_pred -----HHHHHHHHHHHHhh
Q 010611 337 -----KVKDAVYNVTGRLR 350 (506)
Q Consensus 337 -----~V~~A~~~I~~~L~ 350 (506)
.+.+|+.+|..+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78999999999885
No 66
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.88 E-value=1.8e-05 Score=70.51 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=36.8
Q ss_pred CeeEEEEEeecc------cccccccccchHHHHHHhhcCceEEEcC
Q 010611 184 QEVSFRILCSND------KVGAVIGKGGTIIRALQSEAGAFISVGA 223 (506)
Q Consensus 184 ~~vtlrllIP~~------~vG~IIGKgGs~IK~IreeTGa~I~V~~ 223 (506)
..++.+|.||.+ .+|.|||++|++||+|+++|||+|.|..
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~Irg 50 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRG 50 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEE
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecC
Confidence 457889999988 8999999999999999999999999965
No 67
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=4.4e-05 Score=66.84 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=35.6
Q ss_pred CeeEEEEEeecc-------cccccccccchHHHHHHhhcCceEEEcC
Q 010611 184 QEVSFRILCSND-------KVGAVIGKGGTIIRALQSEAGAFISVGA 223 (506)
Q Consensus 184 ~~vtlrllIP~~-------~vG~IIGKgGs~IK~IreeTGa~I~V~~ 223 (506)
..++-+|.||.+ ++|.|||++|.+||+|+++|||+|.+..
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G 56 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRG 56 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEES
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEec
Confidence 457788999875 6999999999999999999999999974
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.74 E-value=2.6e-05 Score=70.13 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=34.4
Q ss_pred eEEEEEeeccc------ccccccccchHHHHHHhhcCceEEEcC
Q 010611 186 VSFRILCSNDK------VGAVIGKGGTIIRALQSEAGAFISVGA 223 (506)
Q Consensus 186 vtlrllIP~~~------vG~IIGKgGs~IK~IreeTGa~I~V~~ 223 (506)
++-|+.||.+. +|.|||++|.++|+|+++|||+|.|..
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrG 45 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRG 45 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEES
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEec
Confidence 56688888765 999999999999999999999999975
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.63 E-value=6.5e-05 Score=82.87 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=54.2
Q ss_pred ceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeC-HHHHHHHHHHHHHHh
Q 010611 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRL 349 (506)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt-~~~V~~A~~~I~~~L 349 (506)
.+....+.||.+.+|.|||+||++||+|+++|||+|.|. .+-.|.|.|+ .+++.+|+.+|..++
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 345778999999999999999999999999999999994 2457999995 678999999887654
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.53 E-value=0.00014 Score=64.52 Aligned_cols=69 Identities=20% Similarity=0.135 Sum_probs=59.5
Q ss_pred EEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhcc
Q 010611 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 279 t~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~ 352 (506)
...+.|.+.+++.|+|++|+.|++|+..|++.|++..- ..+..-.|+|.|++..-..|+.+|..+...+
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-----~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW-----GPERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC-----CTTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc-----CCCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999721 1145677999999999999999999887544
No 71
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.40 E-value=0.00012 Score=66.23 Aligned_cols=103 Identities=22% Similarity=0.324 Sum_probs=72.2
Q ss_pred EEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhccccc
Q 010611 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEK 266 (506)
Q Consensus 187 tlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~~~~ 266 (506)
.+.++|+...+|..||++|++|+.|+++.|-+|.+-. =+.++ ...+.+.+.......
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~-------------~s~d~----------~~fI~naLsPA~V~~ 93 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE-------------YSSDL----------ERIVKNLFPGVKIES 93 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE-------------CCSSH----------HHHHHHHSTTSCEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE-------------cCCCH----------HHHHHHhcCCceEEE
Confidence 5678999999999999999999999999999998853 11111 111222111110000
Q ss_pred CCCcCCCCCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEc
Q 010611 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (506)
Q Consensus 267 g~~~~~~~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~ 314 (506)
..... ........+.||.++.+..|||+|.+++-..+-||.+|.|.
T Consensus 94 -V~i~~-~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 94 -INVRE-RNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp -EEEEE-ETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred -EEEee-cCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 00000 02345788999999999999999999999999999988774
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.77 E-value=0.00071 Score=75.59 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=12.1
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEe-CHHHHHHHHHHHHHHhhccccC
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG-EFSKVKDAVYNVTGRLRDNHFS 355 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItG-t~~~V~~A~~~I~~~L~e~~~~ 355 (506)
+....+.||.+.++.|||+||++||+|+++||++|.|. .+-.|.|.+ +.+++++|+.+|..++.+....
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG 638 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN----------DDGVVKVSASDGAKIKAAIDWIKSITDEAEVG 638 (726)
T ss_dssp CC-----------------------------------------------------CCSCHHHHHHHHHC-----------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE----------CCceEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 34678899999999999999999999999999999984 234578877 4888999999999988765433
No 73
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.73 E-value=0.00083 Score=74.09 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=44.2
Q ss_pred CeeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccC
Q 010611 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239 (506)
Q Consensus 184 ~~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~ 239 (506)
-+-...+.||.+++|.|||+||++||+|+++|||+|.|.+ +-.|.|.|..
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~ 614 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPT 614 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESS
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCC
Confidence 3567789999999999999999999999999999999973 5679999853
No 74
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.71 E-value=0.0022 Score=56.90 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=44.2
Q ss_pred EEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccCC
Q 010611 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240 (506)
Q Consensus 188 lrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~~ 240 (506)
+.+.+.+..++.|+|++|+.|+.|+..|++.|+|....+ +.+--|+|.|.+.
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~ 109 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPP 109 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHH
Confidence 445778999999999999999999999999999986544 3566799999865
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.49 E-value=0.002 Score=58.04 Aligned_cols=37 Identities=24% Similarity=0.571 Sum_probs=34.6
Q ss_pred eEEEEEeeccccceecccCcchHHhhhhhcCceEEEc
Q 010611 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (506)
Q Consensus 278 vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~ 314 (506)
-...++|+...+|..||++|++|+.|+++.|-+|.|.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 3678999999999999999999999999999999997
No 76
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.63 E-value=0.018 Score=56.25 Aligned_cols=175 Identities=20% Similarity=0.217 Sum_probs=100.1
Q ss_pred cccccccccccCCCCCCCCcceee-----ccCCC-CceeeEeeccCchhHHHHhhhccccCCCCCCCCCCcCCCCCCCCc
Q 010611 96 QEILRRPLEVFAPESSHRSSEALS-----IETQH-RLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSL 169 (506)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~in-----is~~~-~PeRivti~g~~~~i~~af~~i~~~l~~~~~~~n~~~~~~~~~~~ 169 (506)
.|.+.-+-+..+ +-.|..+++|. +.++. .|-=+++ ...++.+-+.|.+=. |......-. ..
T Consensus 38 ~EgiLP~~Eqip-~E~~~~GDrIkayV~~V~~~~~gpqIiLS-Rt~p~lvk~Lfe~EV---PEI~dG~ve----I~---- 104 (251)
T 2asb_A 38 SEGVIPAAEQVP-GESYEHGNRLRCYVVGVTRGAREPLITLS-RTHPNLVRKLFSLEV---PEIADGSVE----IV---- 104 (251)
T ss_dssp EEEEECGGGSCT-TCCCCTTCEEEEEEEEEECCSSSCEEEEE-SSCHHHHHHHHHHHC---HHHHTTSEE----EE----
T ss_pred eEEEEcHHHcCC-CccCCCCCEEEEEEEEEEcCCCCCEEEEE-eccHHHHHHHHHhcc---hHhhcCeEE----EE----
Confidence 677777777765 45788888854 55553 4654444 455788888887622 211100000 00
Q ss_pred cccccccccccccCCeeEEEEEeec-ccccccccccchHHHHH-HhhcCceEEEcCCCCCCCcceEEEeccCCCCcCCCh
Q 010611 170 ESDRVATLDARTQQQEVSFRILCSN-DKVGAVIGKGGTIIRAL-QSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247 (506)
Q Consensus 170 ~~~~~~~~~~~~~~~~vtlrllIP~-~~vG~IIGKgGs~IK~I-reeTGa~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~ 247 (506)
.--+.| .....+-++-.-|. +-+|+-||++|++|+.| ++..|-+|.|-. =++++
T Consensus 105 ~iaRe~-----G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~-------------~s~dp------ 160 (251)
T 2asb_A 105 AVAREA-----GHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID-------------YDDDP------ 160 (251)
T ss_dssp EEEEET-----TTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE-------------CCSSH------
T ss_pred EEecCC-----CceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEE-------------ecCCH------
Confidence 000111 11111111111121 45999999999999999 777788887743 11221
Q ss_pred HHHHHHHHHHHHhhcccccCCCcCCCCCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEc
Q 010611 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (506)
Q Consensus 248 a~~Av~~i~~~i~e~~~~~g~~~~~~~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~ 314 (506)
...+...+.......-. . .+. ......+.||.++.+.-|||+|.+++-..+-||.+|.|.
T Consensus 161 ----~~fi~nalsPA~V~~V~-i-~~~-~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~ 220 (251)
T 2asb_A 161 ----ARFVANALSPAKVVSVS-V-IDQ-TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 220 (251)
T ss_dssp ----HHHHHHHTTTSCCSEEE-E-EET-TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred ----HHHHHhccCCcceEEEE-E-EcC-CCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecce
Confidence 12222222211110000 0 001 123688999999999999999999999999999999997
No 77
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.52 E-value=0.022 Score=58.58 Aligned_cols=94 Identities=27% Similarity=0.281 Sum_probs=64.8
Q ss_pred ccccccccccchHHHHHHhhc-CceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhcccccCCCcCCC
Q 010611 195 DKVGAVIGKGGTIIRALQSEA-GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273 (506)
Q Consensus 195 ~~vG~IIGKgGs~IK~IreeT-Ga~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~~~~g~~~~~~ 273 (506)
+-+|..||++|++|+.|.++. |-+|.|-. =++++ ...+.+.+.......- . ..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~-------------~s~dp----------~~fi~nalsPA~V~~V-~-~~- 302 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIID-------------YDDDP----------ARFVANALSPAKVVSV-S-VI- 302 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE-------------CCSSH----------HHHHHHHTTTSCCSEE-E-EE-
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEE-------------cCCCH----------HHHHHHhcCCcceeEE-E-EE-
Confidence 469999999999999999998 77777742 22221 1122222211111000 0 00
Q ss_pred CCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEc
Q 010611 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (506)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~ 314 (506)
........+.||.++.+..|||+|.+++-..+-||.+|.|.
T Consensus 303 ~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~ 343 (366)
T 1k0r_A 303 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 343 (366)
T ss_dssp ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEE
T ss_pred cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeee
Confidence 01134788999999999999999999999999999999997
No 78
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=93.78 E-value=0.011 Score=65.99 Aligned_cols=49 Identities=31% Similarity=0.519 Sum_probs=3.4
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccC
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~ 239 (506)
+-...+.||.+++|.|||+||.+||+|+++||++|.+.+ +-.|.|.+..
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~ 617 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASD 617 (726)
T ss_dssp CC-------------------------------------------------CCSC
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCC
Confidence 446678999999999999999999999999999999963 4567888753
No 79
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.04 E-value=0.087 Score=53.85 Aligned_cols=94 Identities=32% Similarity=0.384 Sum_probs=63.4
Q ss_pred ccccccccccchHHHHHHhhc-CceEEEcCCCCCCCcceEEEeccCCCCcCCChHHHHHHHHHHHHhhcccccCCCcCCC
Q 010611 195 DKVGAVIGKGGTIIRALQSEA-GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273 (506)
Q Consensus 195 ~~vG~IIGKgGs~IK~IreeT-Ga~I~V~~~~p~s~eRvVtIsG~~~~i~~~s~a~~Av~~i~~~i~e~~~~~g~~~~~~ 273 (506)
+-+|+.||.+|++|+.+.++. |-+|.+-. =++++ ...+...+....... -...
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~-------------~s~d~----------~~fi~nal~Pa~v~~---v~~~ 298 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLK-------------WSDDP----------KQLIANALAPATVIE---VEIL 298 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEE-------------CCSSH----------HHHHHHHTCSSCCSE---EEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEe-------------cCCCH----------HHHHHHhcCccEEEE---EEEE
Confidence 458999999999999999998 66666532 22221 122322221111000 0000
Q ss_pred CCceeEEEEEeeccccceecccCcchHHhhhhhcCceEEEc
Q 010611 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (506)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~ 314 (506)
........+.||.++.+.-|||+|.+++--.+-||.+|.|.
T Consensus 299 d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 299 DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp ETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred cCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 01124688999999999999999999999999999999986
No 80
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=92.96 E-value=0.12 Score=50.40 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=34.5
Q ss_pred eEEEEEeccccccccccCCCchHHHHHhhcCCeEEEe
Q 010611 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVSCILNVFA 505 (506)
Q Consensus 469 ~T~eI~VP~~~vG~IIGkgG~~Ik~Irq~SGA~I~I~ 505 (506)
.+..+.||.+..+.-|||+|.|++--.+.||-+|.|.
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~ 220 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 220 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecce
Confidence 3679999999999999999999999999999999884
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.96 E-value=0.034 Score=62.28 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=0.0
Q ss_pred eeEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEe-CHHHHHHHHHHHHHHhhcc
Q 010611 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG-EFSKVKDAVYNVTGRLRDN 352 (506)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItG-t~~~V~~A~~~I~~~L~e~ 352 (506)
+....+.||.+.++.+||+||.+|+.|.+++|+.|.|. .+..|.|.+ +...+++|..+|..++.+.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~----------~dg~v~I~~~~~~~~~~a~~~i~~i~~~~ 625 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE----------DDGTVKIAATDGEKAKHAIRRIEEITAEI 625 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEec----------CCccEEEecCCHHHHHHHHHHHHHHhhhh
Confidence 44667889999999999999999999999999998884 245677776 4567788888877776544
No 82
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=92.61 E-value=0.14 Score=52.68 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=34.8
Q ss_pred eEEEEEeccccccccccCCCchHHHHHhhcCCeEEEe
Q 010611 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVSCILNVFA 505 (506)
Q Consensus 469 ~T~eI~VP~~~vG~IIGkgG~~Ik~Irq~SGA~I~I~ 505 (506)
.+..+.||.+..+..|||+|.|++-..+.||.+|.|.
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~ 343 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 343 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEE
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeee
Confidence 4789999999999999999999999999999999884
No 83
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.27 E-value=0.023 Score=63.91 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=21.0
Q ss_pred eEEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEe-CHHHHHHHHHHHHHHh
Q 010611 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG-EFSKVKDAVYNVTGRL 349 (506)
Q Consensus 278 vt~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItG-t~~~V~~A~~~I~~~L 349 (506)
....+.||.+.+|.+||++|++||+|++++|+.|.|. .+..|.|.+ +....++|...|..+.
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~----------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE----------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEec----------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999884 245677776 4566677776766654
No 84
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=83.11 E-value=0.23 Score=55.51 Aligned_cols=49 Identities=35% Similarity=0.582 Sum_probs=0.0
Q ss_pred eeEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEeccC
Q 010611 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239 (506)
Q Consensus 185 ~vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~~ 239 (506)
+....+.||.++++.+||+||.+|+.|.++||++|.+.+ +..|.|.+..
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~ 607 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATD 607 (723)
T ss_dssp -------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCC
Confidence 456668899999999999999999999999999998863 4567777653
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=80.12 E-value=0.2 Score=56.24 Aligned_cols=47 Identities=28% Similarity=0.428 Sum_probs=16.8
Q ss_pred eEEEEEeecccccccccccchHHHHHHhhcCceEEEcCCCCCCCcceEEEecc
Q 010611 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238 (506)
Q Consensus 186 vtlrllIP~~~vG~IIGKgGs~IK~IreeTGa~I~V~~~~p~s~eRvVtIsG~ 238 (506)
....+.||.+++|.+||++|.+||+|+++||+.|.+.+ +..|.|++.
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~ 644 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAA 644 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC--------------CCCBS
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecC
Confidence 34457799999999999999999999999999999863 556777764
No 86
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=69.78 E-value=2.8 Score=37.83 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=24.9
Q ss_pred EEEEEeecccccccccccchHHHHHHhhcC
Q 010611 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAG 216 (506)
Q Consensus 187 tlrllIP~~~vG~IIGKgGs~IK~IreeTG 216 (506)
++.+-+-.+..|.||||.|.+++.||--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 445556678999999999999999998763
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=68.91 E-value=2.3 Score=35.02 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.0
Q ss_pred EEEEEeecccccccccccchHHHHHHhh
Q 010611 187 SFRILCSNDKVGAVIGKGGTIIRALQSE 214 (506)
Q Consensus 187 tlrllIP~~~vG~IIGKgGs~IK~Iree 214 (506)
..++.|....-|.||||+|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4567788888999999999999998875
No 88
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=66.72 E-value=3.1 Score=42.39 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=34.8
Q ss_pred eEEEEEeccccccccccCCCchHHHHHhhcCCeEEEe
Q 010611 469 TTVEIIVPENVIGSVYGENGSNLLRLRQVSCILNVFA 505 (506)
Q Consensus 469 ~T~eI~VP~~~vG~IIGkgG~~Ik~Irq~SGA~I~I~ 505 (506)
.+..+.||.+..+.-|||+|.|++--.+.||-+|.|.
T Consensus 303 ~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 4789999999999999999999999999999999884
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=50.30 E-value=5.5 Score=32.72 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccCCCchHHHHHh
Q 010611 469 TTVEIIVPENVIGSVYGENGSNLLRLRQ 496 (506)
Q Consensus 469 ~T~eI~VP~~~vG~IIGkgG~~Ik~Irq 496 (506)
..++|.|-...-|.|||++|..|++|++
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 3567888888889999999999988765
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=43.56 E-value=12 Score=33.68 Aligned_cols=67 Identities=9% Similarity=-0.000 Sum_probs=40.4
Q ss_pred EEEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHHHhhccc
Q 010611 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (506)
Q Consensus 279 t~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~~L~e~~ 353 (506)
++.+.+-.+..|.||||.|.+++.||--+.. .+.+. . ...-.+-|-|=.+.-++.+..+...+.+..
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~--~vn~~---~---~~~V~LDve~YRerReetL~~lA~~~A~kV 100 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFN--WIHPT---Y---GYSIRLEISTFLQNQEKVMDTQLQSVIMTV 100 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHH--HHHHH---H---SCEEEEEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHH--Hhhhc---C---CceEEEEhHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566677889999999999999999866522 11110 0 101123344444555666666666665554
No 91
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.83 E-value=13 Score=35.21 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=22.9
Q ss_pred EEEEeecccccccccccchHHHHHHhh
Q 010611 188 FRILCSNDKVGAVIGKGGTIIRALQSE 214 (506)
Q Consensus 188 lrllIP~~~vG~IIGKgGs~IK~Iree 214 (506)
.++.|....-|.|||++|..|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456777788999999999999998764
No 92
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=36.50 E-value=13 Score=35.92 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=24.5
Q ss_pred EEEEEeecccccccccccchHHHHHHhhc
Q 010611 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (506)
Q Consensus 187 tlrllIP~~~vG~IIGKgGs~IK~IreeT 215 (506)
-.++.|....-|.|||++|..|++|+...
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 35677888899999999999999988754
No 93
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=35.03 E-value=17 Score=35.12 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=24.8
Q ss_pred EEEEEeecccccccccccchHHHHHHhhc
Q 010611 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (506)
Q Consensus 187 tlrllIP~~~vG~IIGKgGs~IK~IreeT 215 (506)
-.++.|....-|.|||++|..|++|+...
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 45678888899999999999999988763
No 94
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=34.26 E-value=15 Score=35.09 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=25.6
Q ss_pred EEEEeecccccccccccchHHHHHHhhcCceE
Q 010611 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFI 219 (506)
Q Consensus 188 lrllIP~~~vG~IIGKgGs~IK~IreeTGa~I 219 (506)
+.+.+.....|.||||.|.+++.||.-+..-+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 34445677899999999999999999876443
No 95
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.89 E-value=13 Score=35.58 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.7
Q ss_pred EEEEEeecccccccccccchHHHHHHhhc
Q 010611 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (506)
Q Consensus 187 tlrllIP~~~vG~IIGKgGs~IK~IreeT 215 (506)
-.++.|....-|.|||++|..|++|+++.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 45678888999999999999999988753
No 96
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=32.77 E-value=21 Score=34.89 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=28.2
Q ss_pred eeEEEEEeec-ccccccccccchHHHHHHhh--------cCceEEEc
Q 010611 185 EVSFRILCSN-DKVGAVIGKGGTIIRALQSE--------AGAFISVG 222 (506)
Q Consensus 185 ~vtlrllIP~-~~vG~IIGKgGs~IK~Iree--------TGa~I~V~ 222 (506)
.+.-.++|.. ++.|-||||+|+.||+|..+ .|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 3555567764 68899999999999988664 56666653
No 97
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.09 E-value=16 Score=35.40 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.8
Q ss_pred EEEEEeecccccccccccchHHHHHHhhc
Q 010611 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (506)
Q Consensus 187 tlrllIP~~~vG~IIGKgGs~IK~IreeT 215 (506)
-.++.|....-|.|||++|..|++|+++.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 45677788899999999999999988764
No 98
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=29.52 E-value=14 Score=34.84 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=22.1
Q ss_pred EEEEeecccccccccccchHHHHHHhh
Q 010611 188 FRILCSNDKVGAVIGKGGTIIRALQSE 214 (506)
Q Consensus 188 lrllIP~~~vG~IIGKgGs~IK~Iree 214 (506)
+++.|....-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 345666778899999999999988764
No 99
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=26.94 E-value=16 Score=35.02 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=22.3
Q ss_pred EEEEeecccccccccccchHHHHHHhh
Q 010611 188 FRILCSNDKVGAVIGKGGTIIRALQSE 214 (506)
Q Consensus 188 lrllIP~~~vG~IIGKgGs~IK~Iree 214 (506)
+++.|....-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456667778899999999999988764
No 100
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=26.19 E-value=93 Score=29.41 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=42.9
Q ss_pred EEEEeeccccceecccCcchHHhhhhhcCceEEEccCcccccCCCCCeEEEEEeCHHHHHHHHHHHHH
Q 010611 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347 (506)
Q Consensus 280 ~~l~VP~~~vG~IIGkgG~~IkeIr~~TGA~I~I~~d~~P~~~~s~eR~VtItGt~~~V~~A~~~I~~ 347 (506)
.-+.++...+..++|+++..++.|.+.+++.|-+-. +- .|=|.++......+...|..
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~---------NG-~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ---------NG-LIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT---------TS-EEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC---------Cc-EEEEeCCchhHHHHHHHHHH
Confidence 345788999999999999999999999999998841 22 35588887655444444433
No 101
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.76 E-value=25 Score=34.40 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=28.4
Q ss_pred ceeEEEEEeec-cccceecccCcchHHhhhhh--------cCceEEE
Q 010611 276 LLVNARLVVAS-NQVGCLLGKGGTIISEMRKV--------TGTSIRI 313 (506)
Q Consensus 276 ~~vt~~l~VP~-~~vG~IIGkgG~~IkeIr~~--------TGA~I~I 313 (506)
..+...++|.. ++-+.||||+|+.||+|... .|++|.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 34667788876 47799999999999987543 5666555
No 102
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=25.02 E-value=24 Score=34.01 Aligned_cols=26 Identities=42% Similarity=0.668 Sum_probs=21.5
Q ss_pred EEEeecccccccccccchHHHHHHhh
Q 010611 189 RILCSNDKVGAVIGKGGTIIRALQSE 214 (506)
Q Consensus 189 rllIP~~~vG~IIGKgGs~IK~Iree 214 (506)
++.|-...-|.|||++|+.|++|+++
T Consensus 65 ~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 65 AVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEeCCCcceecCCchHHHHHHHH
Confidence 45566678899999999999998875
No 103
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=24.31 E-value=30 Score=33.34 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=23.6
Q ss_pred eEEEEEeccccccccccCCCchHHHHHhh
Q 010611 469 TTVEIIVPENVIGSVYGENGSNLLRLRQV 497 (506)
Q Consensus 469 ~T~eI~VP~~~vG~IIGkgG~~Ik~Irq~ 497 (506)
..++|.|-...-|.|||++|..|++|++.
T Consensus 44 ~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 44 TKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34677787888899999999999887643
No 104
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=23.77 E-value=19 Score=35.27 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=24.5
Q ss_pred EEee-cccccccccccchHHHHHHhh--------cCceEEEc
Q 010611 190 ILCS-NDKVGAVIGKGGTIIRALQSE--------AGAFISVG 222 (506)
Q Consensus 190 llIP-~~~vG~IIGKgGs~IK~Iree--------TGa~I~V~ 222 (506)
+.|. .++.+.||||+|+.||+|..+ .|++|.+.
T Consensus 234 i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 234 LYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 4444 367899999999999988664 56666653
No 105
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.72 E-value=26 Score=33.12 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=22.0
Q ss_pred EEEEEeccccccccccCCCchHHHHHh
Q 010611 470 TVEIIVPENVIGSVYGENGSNLLRLRQ 496 (506)
Q Consensus 470 T~eI~VP~~~vG~IIGkgG~~Ik~Irq 496 (506)
.++|.|-...-|.|||++|..|++|++
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 456777777889999999999988754
No 106
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.49 E-value=21 Score=33.95 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=22.5
Q ss_pred EEEEeecccccccccccchHHHHHHhhc
Q 010611 188 FRILCSNDKVGAVIGKGGTIIRALQSEA 215 (506)
Q Consensus 188 lrllIP~~~vG~IIGKgGs~IK~IreeT 215 (506)
+++.|....-|.||||+|..|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 3456667788999999999999988754
No 107
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=22.03 E-value=35 Score=32.93 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.3
Q ss_pred eEEEEEeccccccccccCCCchHHHHHhh
Q 010611 469 TTVEIIVPENVIGSVYGENGSNLLRLRQV 497 (506)
Q Consensus 469 ~T~eI~VP~~~vG~IIGkgG~~Ik~Irq~ 497 (506)
..++|.|-...-|.|||++|..|++|++.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 35678888888999999999999987763
No 108
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.68 E-value=30 Score=33.07 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.7
Q ss_pred eEEEEEeccccccccccCCCchHHHHHh
Q 010611 469 TTVEIIVPENVIGSVYGENGSNLLRLRQ 496 (506)
Q Consensus 469 ~T~eI~VP~~~vG~IIGkgG~~Ik~Irq 496 (506)
..++|.|-...-|.|||++|..|++|++
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3567888888889999999999988765
Done!