BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010613
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/402 (26%), Positives = 175/402 (43%), Gaps = 61/402 (15%)
Query: 51 NGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAA-DGTNVLNLQGKVVVPGFIDSH 109
NG I+T + L + I +G+++ G+ +++ G +++L+GK V+P F DSH
Sbjct: 8 NGTIYTSFNPLKKVSGLVISHGKVIYAGDSEVAKKIVELSGGEIVDLKGKYVMPAFFDSH 67
Query: 110 VHFIPGGLQMARVKLRGVSHKDEFVRRVKEAV---------KNSKKGSWIXXXXXXXXXX 160
+H G+ + V LRG +E ++R+K + G W
Sbjct: 68 LHLDELGMSLEMVDLRGAKSIEELIQRLKRGKGRIIFGFGWDQDELGEW----------- 116
Query: 161 XXXXPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSE-DPNGGTIMKTSSG 219
P ++ I PV++ R H+ +AN L+L+ +T + D + G I + S
Sbjct: 117 ----PTRKELNAI--DKPVFIYRKCFHVAVANDKMLELLNLTPSKDFDEDTGIIKEKS-- 168
Query: 220 EPTGLLIDAAMKLILPWIPEVSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQLS 279
++ A K+I + ++V+ GV +V S
Sbjct: 169 ------LEEARKVINERV--LTVEDYVYYIKRAQEHLLDLGVKSV----------SFMSV 210
Query: 280 WEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGS 339
E + K+ I V + E L + G + + + GVK F DGS
Sbjct: 211 NEKALRALFYLEREGKLSINVFAYVTPEVLDKLESI--GLGRFQGNRLTIAGVKLFTDGS 268
Query: 340 LGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY 399
LG+ +AL +PY+D+P G VME E L+ +T + GL VAIHAIGD+A D+ LD++
Sbjct: 269 LGARTALLSKPYSDDPSTSGQLVMEREELIRITEKARSLGLDVAIHAIGDKALDVALDVF 328
Query: 400 KSVVVTTGKRDQRF--RIEHAQHLASGTAARFGDQGIVASMQ 439
+ TTG F RIEHA + R + + S+Q
Sbjct: 329 E----TTG-----FPGRIEHASLVRDDQLERVKNLKVRLSVQ 361
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 179/429 (41%), Gaps = 68/429 (15%)
Query: 51 NGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAA-DGTNVLNLQGKVVVPGFIDSH 109
NG I+T + + I N R++ G+ S ++A G +++L+GK V+P F DSH
Sbjct: 42 NGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSH 101
Query: 110 VHFIPGGLQMARVKLRGVSHKDEFVRRVKEAV---------KNSKKGSWIXXXXXXXXXX 160
+H G+ + V LRGV +E V RVK+ + G W
Sbjct: 102 LHLDELGMSLEMVDLRGVKSMEELVERVKKGRGRIIFGFGWDQDELGRW----------- 150
Query: 161 XXXXPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGE 220
P +D I PV+L R H+ + NS +++ + NL + E
Sbjct: 151 ----PTREDLDVID--RPVFLYRRCFHVAVMNS---KMIDLLNLKPSKD--------FDE 193
Query: 221 PTGLLIDAAMKLILPWIPE--VSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQL 278
TG++ + A++ I E ++V GV +V G GE
Sbjct: 194 STGIVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSV---GFMSVGEKA-- 248
Query: 279 SWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADL-INK-TGHVLSDWVYLGGVKAFA 336
+++ ++K+ V + E L +L + K G L W GV F
Sbjct: 249 ----LKALFELEREG-RLKMNVFAYLSPELLDKLEELNLGKFEGRRLRIW----GVXLFV 299
Query: 337 DGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVL 396
DGSLG+ +AL EPY D P G VM + ++ + + GL VA+HAIGD+A D+ L
Sbjct: 300 DGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLDVAVHAIGDKAVDVAL 359
Query: 397 DMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQ---VWTTFWQSIVNPLL 453
D ++ + RIEHA + R + + S Q + + +W IVN +
Sbjct: 360 DAFEEAEFSG-------RIEHASLVRDDQLERIKELKVRISAQPHFIVSDWW--IVNRVG 410
Query: 454 ISTDVWNFR 462
W +R
Sbjct: 411 EERAKWAYR 419
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 16/71 (22%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAAD-----GTNVLNLQGKV 100
DL++ NG+I T D ++A +A+ NG+ VQ +AA G+ V++ +G
Sbjct: 4 DLIIKNGIICTASD--IYAAEIAVNNGK---------VQLIAASIDPSLGSEVIDAEGAF 52
Query: 101 VVPGFIDSHVH 111
+ PG ID+HVH
Sbjct: 53 ITPGGIDAHVH 63
>pdb|3GGM|A Chain A, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|B Chain B, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|C Chain C, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|D Chain D, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
Length = 81
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D+++ NG I T D S ++AI +G I +VG + A + T ++L+ K +PG
Sbjct: 5 DMILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNS-ATEKTKKIDLKRKRAIPGL 63
Query: 106 IDSHVHFIPG 115
DSH+H I G
Sbjct: 64 NDSHIHVIRG 73
>pdb|1RJQ|A Chain A, The Crystal Structure Of The D-Aminoacylase Mutant D366a
pdb|1RJR|A Chain A, The Crystal Structure Of The D-Aminoacylase D366a Mutant
In Complex With 100mm Zncl2
pdb|1RK5|A Chain A, The D-Aminoacylase Mutant D366a In Complex With 100mm
Cucl2
Length = 496
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 22 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 76
Query: 106 IDSHVH 111
IDSH H
Sbjct: 77 IDSHTH 82
>pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 22 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 76
Query: 106 IDSHVH 111
IDSH H
Sbjct: 77 IDSHTH 82
>pdb|1RJP|A Chain A, Crystal Structure Of D-Aminoacylase In Complex With 100mm
Cucl2
pdb|1RK6|A Chain A, The Enzyme In Complex With 50mm Cdcl2
pdb|1V51|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 22 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 76
Query: 106 IDSHVH 111
IDSH H
Sbjct: 77 IDSHTH 82
>pdb|1M7J|A Chain A, Crystal Structure Of D-Aminoacylase Defines A Novel Subset
Of Amidohydrolases
Length = 484
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 10 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 64
Query: 106 IDSHVH 111
IDSH H
Sbjct: 65 IDSHTH 70
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQ 118
+ NG+I++V S + V++L G+++ PGFID HVH I GG Q
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGQ 77
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
++ NG I T D+ + + IK+G+I +G Q L G V++ +G V PG ID
Sbjct: 4 IIKNGTIVTATDT--YEAHLLIKDGKIAMIG-----QNLEEKGAEVIDAKGCYVFPGGID 56
Query: 108 SHVHFIPGGLQMARVKLRGVSHKDEF 133
H H + L G KD+F
Sbjct: 57 PHTHL--------DMPLGGTVTKDDF 74
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 55 FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI- 113
+ ++ + A + +++G+I V + + AD V+++ GK++ PG +D HVH
Sbjct: 10 YMNEEGKIVATDLLVQDGKIAKV-----AENITADNAEVIDVNGKLIAPGLVDVHVHLRE 64
Query: 114 PGG 116
PGG
Sbjct: 65 PGG 67
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ NG+I++V S + V++L G+++ PGFID HVH I GG
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG 75
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ NG+I++V S + V++L G+++ PGFID HVH I GG
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG 75
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ NG+I++V S + V++L G+++ PGFID HVH I GG
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG 75
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ NG+I++V S + V++L G+++ PGFID HVH I GG
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG 75
>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 570
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYS--------AVQQLAADGTNVLNLQ 97
DL++TN +I D + ++ + +K+G IV +G + T V+ +
Sbjct: 68 DLLLTNALIL--DYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAE 125
Query: 98 GKVVVPGFIDSHVHFI 113
GK+V G ID+HVHFI
Sbjct: 126 GKIVTAGGIDTHVHFI 141
>pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1S3T|C Chain C, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|C Chain C, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 570
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYS--------AVQQLAADGTNVLNLQ 97
DL++TN +I D + ++ + +K+G IV +G + T V+ +
Sbjct: 68 DLLLTNALIL--DYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAE 125
Query: 98 GKVVVPGFIDSHVHFI 113
GK+V G ID+HVHFI
Sbjct: 126 GKIVTAGGIDTHVHFI 141
>pdb|3QGA|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGK|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
Length = 568
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYS--------AVQQLAADGTNVLNLQ 97
DLV+TN +I D + ++ + IKNG+I +G + GT L +
Sbjct: 66 DLVITNALII--DYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGE 123
Query: 98 GKVVVPGFIDSHVHFI 113
G ++ G IDSH HF+
Sbjct: 124 GMIITAGGIDSHTHFL 139
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAAD-GTNVLNLQGKVVVPGF 105
L++ NG I T D S AD A + I +G Q L A GT V++ GK V PGF
Sbjct: 2 LLIKNGEIITAD-SRYKADIYA-EGETITRIG-----QNLEAPPGTEVIDATGKYVFPGF 54
Query: 106 IDSHVH-FIP 114
ID HVH ++P
Sbjct: 55 IDPHVHIYLP 64
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 52 GVIFTGD--DSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSH 109
G I +GD +L AD++ +++G I ++G ++ A D T +++ G V PG +D+H
Sbjct: 10 GKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKD-AGDAT-IIDAAGSTVTPGLLDTH 67
Query: 110 VHFIPGGLQMARVK 123
VH + GG R K
Sbjct: 68 VH-VSGGDYAPRQK 80
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ NG + +++ + +A+K G+I ++G Q D V + G VV PG
Sbjct: 24 DLIIKNGTVILENEARVV--DIAVKGGKIAAIG------QDLGDAKEVXDASGLVVSPGX 75
Query: 106 IDSHVHF 112
+D+H H
Sbjct: 76 VDAHTHI 82
>pdb|3GIP|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIP|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIQ|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate.
pdb|3GIQ|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate
Length = 480
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +T G I G + + +++GRI ++G A + + GK+V PGF
Sbjct: 8 DFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGA-----HPARHAWDASGKIVAPGF 62
Query: 106 IDSHVH 111
ID H H
Sbjct: 63 IDVHGH 68
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR--VKL 124
+ I +IV G A AD +++ G++V PG +D H H + GG + +KL
Sbjct: 40 VGIHEQKIVFAGQKGAEAGYEAD--EIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKL 97
Query: 125 RGVSHKD 131
+G+S+ D
Sbjct: 98 QGISYLD 104
>pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
pdb|3HPA|B Chain B, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
Length = 479
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
LV V+ T DD+ L + I++ RIV+VG + + + A + VL+L+G +V+PG
Sbjct: 32 LVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADE---VLDLRGHLVIPG 88
Query: 105 FIDSHVHF 112
+++H H
Sbjct: 89 LVNTHHHM 96
>pdb|1KRC|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1KRA|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
Length = 567
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 66 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 123
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 124 IVTAGGIDTHIHWI 137
>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
Length = 567
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|4EP8|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|C Chain C, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|C Chain C, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 566
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 66 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 123
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 124 IVTAGGIDTHIHWI 137
>pdb|1KRB|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
Length = 567
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
pdb|1EJX|C Chain C, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|C Chain C, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|2KAU|C Chain C, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
Length = 567
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 66 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 123
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 124 IVTAGGIDTHIHWI 137
>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 66 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 123
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 124 IVTAGGIDTHIHWI 137
>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
Length = 567
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+V NG + +L + ++NG+I + V + +++ +G +V PGFI
Sbjct: 4 LIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVPE-----AEIIDAKGLIVCPGFI 58
Query: 107 DSHVHF 112
D HVH
Sbjct: 59 DIHVHL 64
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+V NG + +L + ++NG+I + V + +++ +G +V PGFI
Sbjct: 49 LIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVPE-----AEIIDAKGLIVCPGFI 103
Query: 107 DSHVHF 112
D HVH
Sbjct: 104 DIHVHL 109
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVG-NYSAVQQLAADGTNVLNLQGKVVVPGFI 106
V+ G I T D L + + ++ GRIV +G N S G L+ G V+PG I
Sbjct: 4 VIKGGTIVTAD--LTYKADVKVEGGRIVEIGPNLS--------GAETLDATGCYVMPGGI 53
Query: 107 DSHVHF 112
D H H
Sbjct: 54 DPHTHL 59
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 15/63 (23%)
Query: 69 IKNGRIVSVGNYSA---------VQQLA-----ADGTNVLNLQGKVVVPGFIDSHVHFI- 113
IKNG+++ G ++Q+A ++G ++++ +G V PGF+D HVH
Sbjct: 4 IKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHLRE 63
Query: 114 PGG 116
PGG
Sbjct: 64 PGG 66
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D+++ NG I T D + AD + IK+G+I +G + D G+ V PG
Sbjct: 2 DIIIKNGTIVTAD-GISRAD-LGIKDGKITQIGGALGPAERTIDAA------GRYVFPGG 53
Query: 106 IDSHVH 111
ID H H
Sbjct: 54 IDVHTH 59
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 46 DLVVTNGVI--FTGDDSLLFADSMAIKNGRIVSVG--------NYSAVQQLAADGTNVLN 95
D V+TN VI +TG ++ AD + IK+G I S+G N + T V+
Sbjct: 338 DTVITNAVIIDYTG---IIKAD-IGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIA 393
Query: 96 LQGKVVVPGFIDSHVHFI 113
+G +V G ID HVH+I
Sbjct: 394 GEGLIVTAGAIDCHVHYI 411
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125
+A++NGRI G S + + + G+ + P ID H H + GG + ++R
Sbjct: 42 IAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMR 100
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125
+A++NGRI G S + + + G+ + P ID H H + GG + ++R
Sbjct: 44 IAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMR 102
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 46 DLVVTNGVI--FTGDDSLLFADSMAIKNGRIVSVG--------NYSAVQQLAADGTNVLN 95
D V+TN VI +TG ++ AD + IK+G I S+G N + T V+
Sbjct: 338 DTVITNAVIIDYTG---IIKAD-IGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIA 393
Query: 96 LQGKVVVPGFIDSHVHFI 113
+G +V G ID HVH+I
Sbjct: 394 GEGLIVTAGAIDCHVHYI 411
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 46 DLVVTNGVI--FTGDDSLLFADSMAIKNGRIVSVG--------NYSAVQQLAADGTNVLN 95
D V+TN VI +TG ++ AD + IK+G I S+G N + T V+
Sbjct: 338 DTVITNAVIIDYTG---IIKAD-IGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIA 393
Query: 96 LQGKVVVPGFIDSHVHFI 113
+G +V G ID HVH+I
Sbjct: 394 GEGLIVTAGAIDCHVHYI 411
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+ +G I + G Y + A G + +++ +++VPGFID H+H
Sbjct: 40 VTDGVIKAFGPYEKIAA-AHPGVEITHIKDRIIVPGFIDGHIHL 82
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
++ G DD AD + I+NG I VG + + G V++ GK+V+PG ID
Sbjct: 32 ILIKGGKVVNDDCTHEAD-VYIENGIIQQVGR----ELMIPGGAKVIDATGKLVIPGGID 86
Query: 108 SHVHF 112
+ HF
Sbjct: 87 TSTHF 91
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
++ G DD AD + I+NG I VG + + G V++ GK+V+PG ID
Sbjct: 11 ILIKGGKVVNDDCTHEAD-VYIENGIIQQVGR----ELMIPGGAKVIDATGKLVIPGGID 65
Query: 108 SHVHF 112
+ HF
Sbjct: 66 TSTHF 70
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDS 108
+ G + T D+ + + I+ R+V++G+ QL+ +G ++ G V+PG ID
Sbjct: 5 IRGGTVVTAADT--YQADVLIEGERVVAIGH-----QLSVNGAEEIDATGCYVIPGGIDP 57
Query: 109 HVHF 112
H H
Sbjct: 58 HTHL 61
>pdb|2OOF|A Chain A, The Crystal Structure Of 4-imidazolone-5-propanoate
Amidohydrolase From Environmental Sample
pdb|2Q09|A Chain A, Crystal Structure Of Imidazolonepropionase From
Environmental Sample With Bound Inhibitor
3-(2,5-Dioxo-Imidazolidin-4-Yl)-Propionic Acid
Length = 416
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 58 DDSLLFADSMAIKNGRIVSV-------GNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHV 110
D LL ++ + GRI ++ G Y A Q + +GK+V PG ID H
Sbjct: 23 DYGLLEPHALGVHEGRIHALVPXQDLKGPYPAHWQ---------DXKGKLVTPGLIDCHT 73
Query: 111 HFIPGGLQMARVKLR 125
H I G + +LR
Sbjct: 74 HLIFAGSRAEEFELR 88
>pdb|3MKV|A Chain A, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|B Chain B, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|C Chain C, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|D Chain D, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|E Chain E, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|F Chain F, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|G Chain G, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|H Chain H, Crystal Structure Of Amidohydrolase Eaj56179
Length = 426
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 51 NGVIFTGD-DSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSH 109
NG + D LL + I++G I V + + + + +V++++GK ++PG ID H
Sbjct: 10 NGALLDPDHPDLLQGFEILIEDGFIREVSD----KPIKSSNAHVIDVKGKTIMPGLIDLH 65
Query: 110 VHFIPGGLQMARVK--------LRGVSHKDEFVRRVKEAVKNSKKGSW 149
VH + + RV LR V +RR V+++ +
Sbjct: 66 VHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGY 113
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 60 SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVH 111
S F + + NG++ VG + + +++L GK + PGF+D+H H
Sbjct: 19 SRPFKGDVLVSNGKVEKVG-----ENIEDPDAEIVDLTGKFLFPGFVDAHSH 65
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
Length = 423
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 91 TNVLNLQGKVVVPGFIDSHVHFI 113
++++GK V+PGFID HVH +
Sbjct: 47 AQAIDVRGKTVMPGFIDCHVHVL 69
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 91 TNVLNLQGKVVVPGFIDSHVHFI 113
++++GK V+PGFID HVH +
Sbjct: 47 AQAIDVRGKTVMPGFIDCHVHVL 69
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D++V N + + D + AD + +K+G++ ++ ++ + + ++ GK V+PG
Sbjct: 3 DVIVKNCRLVS-SDGITEADIL-VKDGKVAAISADTS----DVEASRTIDAGGKFVMPGV 56
Query: 106 IDSHVHFI 113
+D HVH I
Sbjct: 57 VDEHVHII 64
>pdb|1FWI|C Chain C, Klebsiella Aerogenes Urease, H134a Variant
Length = 567
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+ +H+I
Sbjct: 125 IVTAGGIDTAIHWI 138
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV 101
++ +D ++ G DD +AD + +++G I +G + G + ++V
Sbjct: 22 SMTSDRLLIKGGKIVNDDQSFYAD-IYMEDGLIKQIGE----NLIVPGGVKTIEAHSRMV 76
Query: 102 VPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAV 141
+PG ID H F QM +G++ D+F + K A+
Sbjct: 77 IPGGIDVHTRF-----QMPD---QGMTSADDFFQGTKAAL 108
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
+++ NG + +D F + ++NG I + ++ G V++ K+++PG I
Sbjct: 10 ILIKNGTVV--NDDRYFKSDVLVENGIIKEISKNIEPKE----GIKVVDATDKLLLPGGI 63
Query: 107 DSHVHF 112
D+H HF
Sbjct: 64 DTHTHF 69
>pdb|3DUG|A Chain A, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|B Chain B, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|C Chain C, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|D Chain D, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|E Chain E, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|F Chain F, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|G Chain G, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|H Chain H, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
Length = 408
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+ + G + ++ AD + I+NG+I +G ++ V+++ +++PG +
Sbjct: 9 LIKSKGYLDIQTGEIIKAD-LLIRNGKIAEIG------KINTKDATVISIPDLILIPGLM 61
Query: 107 DSHVHFI 113
DSHVH +
Sbjct: 62 DSHVHIV 68
>pdb|3BE7|A Chain A, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|B Chain B, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|C Chain C, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|D Chain D, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|E Chain E, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|F Chain F, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|G Chain G, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|H Chain H, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
Length = 408
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+ + G + ++ AD + I+NG+I +G ++ V+++ +++PG +
Sbjct: 9 LIKSKGYLDIQTGEIIKAD-LLIRNGKIAEIG------KINTKDATVISIPDLILIPGLM 61
Query: 107 DSHVHFI 113
DSHVH +
Sbjct: 62 DSHVHIV 68
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L++ G + DD AD + +++G + ++G+ A G VL+ GK+V+PG I
Sbjct: 29 LLIRGGRVVN-DDFSEVADVL-VEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGI 86
Query: 107 DSHVHF 112
D+H H
Sbjct: 87 DTHTHM 92
>pdb|2OGJ|A Chain A, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|B Chain B, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|C Chain C, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|D Chain D, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|E Chain E, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|F Chain F, Crystal Structure Of A Dihydroorotase
Length = 417
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 43 LEADLVVTN--GVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKV 100
L+A +++TN V F S D + +G+I +VG SA+Q A T ++ +G
Sbjct: 13 LQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVG--SALQAPA--DTQRIDAKGAF 68
Query: 101 VVPGFIDSHVHFIPGGLQMA 120
+ PG++D HVH GG ++
Sbjct: 69 ISPGWVDLHVHIWHGGTDIS 88
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine Carboxypeptidase
Cc2672 From Caulobacter Crescentus Cb15 Complexed With
N-Methyl Phosphonate Derivative Of L-Arginine
Length = 403
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+ +GRI S+G G ++L G ++PG ID HVH
Sbjct: 27 VTDGRITSIGKKG---DAVPAGATAVDLPGVTLLPGLIDMHVHL 67
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDS 108
+ NG + T D+ + + I ++V++G+ L A V++ G ++PG ID
Sbjct: 5 IRNGTVVTASDT--YQADVLIDGEKVVAIGS-----DLQATDAEVIDATGYYLLPGGIDP 57
Query: 109 HVHF 112
H H
Sbjct: 58 HTHL 61
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 88 ADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVR 135
ADG N++N + +HVH +P +R V H+ +F R
Sbjct: 112 ADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFDIRFVQHEPDFTR 159
>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
Length = 381
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
+TN I+TG+D +L ++ I +I +V ++ L ++ NV++L G + PGFID
Sbjct: 7 LTNCKIYTGND-VLVKHAVIINGDKIEAV---CPIESLPSE-MNVVDLNGANLSPGFID 60
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 317 NKTGHVLSDWV--YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME-LESLLSMTM 373
N G +LSD +GG+ G++G +A+F + P G + ++LS M
Sbjct: 224 NLLGDILSDLAAGLMGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAM 283
Query: 374 ASDKSGLQVAIHAIGDRANDLVLD 397
D G + A + ++A DLVL+
Sbjct: 284 MLDYLGEKEAAKRV-EKAVDLVLE 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,929,035
Number of Sequences: 62578
Number of extensions: 535201
Number of successful extensions: 1139
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 85
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)