Query 010613
Match_columns 506
No_of_seqs 267 out of 2761
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1574 Predicted metal-depend 100.0 2.6E-79 5.6E-84 644.5 39.4 444 43-500 3-452 (535)
2 cd01300 YtcJ_like YtcJ_like me 100.0 5.1E-69 1.1E-73 574.9 41.4 418 66-496 1-423 (479)
3 PF07969 Amidohydro_3: Amidohy 100.0 9.1E-44 2E-48 372.2 6.2 333 100-497 1-347 (404)
4 PRK15493 5-methylthioadenosine 100.0 4.1E-27 8.8E-32 248.4 29.9 301 45-496 1-319 (435)
5 PRK06687 chlorohydrolase; Vali 100.0 3E-27 6.5E-32 248.6 27.6 287 47-482 2-306 (419)
6 TIGR03314 Se_ssnA putative sel 99.9 1.1E-25 2.4E-30 237.9 30.6 306 47-498 1-324 (441)
7 PRK06038 N-ethylammeline chlor 99.9 2.3E-25 5E-30 234.9 29.2 300 45-497 2-313 (430)
8 PRK06380 metal-dependent hydro 99.9 2.4E-25 5.1E-30 234.2 28.4 293 45-497 1-310 (418)
9 PRK12393 amidohydrolase; Provi 99.9 2.4E-25 5.1E-30 236.4 27.3 316 44-497 1-341 (457)
10 PRK08203 hydroxydechloroatrazi 99.9 5.1E-25 1.1E-29 233.9 29.8 306 47-498 4-338 (451)
11 PRK07203 putative chlorohydrol 99.9 1.1E-24 2.3E-29 230.8 30.6 312 47-497 2-324 (442)
12 PRK09045 N-ethylammeline chlor 99.9 1.3E-25 2.9E-30 237.7 22.9 301 44-497 6-325 (443)
13 PRK07228 N-ethylammeline chlor 99.9 6.6E-25 1.4E-29 232.7 28.0 306 45-497 1-322 (445)
14 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.9 7.7E-25 1.7E-29 229.5 24.8 302 47-498 1-318 (411)
15 PRK06151 N-ethylammeline chlor 99.9 1E-24 2.2E-29 233.4 24.7 307 46-497 2-349 (488)
16 PRK08204 hypothetical protein; 99.9 3.9E-24 8.5E-29 227.1 28.5 301 45-499 2-318 (449)
17 PRK08418 chlorohydrolase; Prov 99.9 9.2E-24 2E-28 220.9 27.0 296 47-497 2-327 (408)
18 PRK08393 N-ethylammeline chlor 99.9 5.1E-24 1.1E-28 224.3 24.2 303 45-497 1-312 (424)
19 cd01303 GDEase Guanine deamina 99.9 9.6E-25 2.1E-29 230.1 18.3 299 56-499 16-335 (429)
20 TIGR02967 guan_deamin guanine 99.9 7.1E-24 1.5E-28 221.9 23.8 123 361-498 181-312 (401)
21 PRK14085 imidazolonepropionase 99.9 8.9E-24 1.9E-28 219.6 21.5 281 45-481 1-302 (382)
22 cd01313 Met_dep_hydrolase_E Me 99.9 1.3E-23 2.8E-28 220.8 21.6 120 361-498 202-327 (418)
23 PRK09228 guanine deaminase; Pr 99.9 8.5E-23 1.8E-27 215.3 25.9 123 361-498 206-337 (433)
24 cd01312 Met_dep_hydrolase_D Me 99.9 8.4E-23 1.8E-27 211.7 23.5 206 241-500 69-307 (381)
25 PRK07213 chlorohydrolase; Prov 99.9 3.1E-22 6.7E-27 207.5 27.4 291 47-499 2-301 (375)
26 PRK09230 cytosine deaminase; P 99.9 4.8E-22 1E-26 209.0 27.8 304 44-482 3-316 (426)
27 cd01293 Bact_CD Bacterial cyto 99.9 5.1E-22 1.1E-26 207.2 26.5 311 49-496 2-326 (398)
28 PRK09356 imidazolonepropionase 99.9 3.9E-22 8.4E-27 209.1 25.3 309 44-499 2-331 (406)
29 PRK09229 N-formimino-L-glutama 99.9 3.8E-22 8.2E-27 212.0 25.4 122 360-499 210-337 (456)
30 PRK05985 cytosine deaminase; P 99.9 8.3E-22 1.8E-26 205.5 26.9 301 44-497 1-313 (391)
31 COG0402 SsnA Cytosine deaminas 99.9 5E-22 1.1E-26 209.0 23.4 297 46-496 3-320 (421)
32 PRK07572 cytosine deaminase; V 99.9 3.4E-21 7.5E-26 202.9 26.2 298 45-482 2-312 (426)
33 TIGR02022 hutF formiminoglutam 99.9 1.4E-21 2.9E-26 207.5 22.7 120 361-498 211-336 (455)
34 TIGR01224 hutI imidazoloneprop 99.9 3E-21 6.6E-26 200.3 23.0 97 363-480 194-291 (377)
35 cd01296 Imidazolone-5PH Imidaz 99.8 1E-19 2.2E-24 188.5 22.5 192 239-480 84-287 (371)
36 cd01299 Met_dep_hydrolase_A Me 99.8 3.2E-20 6.9E-25 190.1 18.4 131 329-482 134-274 (342)
37 PRK07583 cytosine deaminase-li 99.8 5.2E-18 1.1E-22 179.4 28.0 115 364-482 210-334 (438)
38 PRK06846 putative deaminase; V 99.8 8.4E-17 1.8E-21 168.9 26.6 118 362-496 202-330 (410)
39 PLN02942 dihydropyrimidinase 99.8 6.2E-17 1.4E-21 173.2 25.7 279 43-483 3-323 (486)
40 cd01305 archeal_chlorohydrolas 99.8 8.6E-18 1.9E-22 165.9 16.7 193 239-499 44-238 (263)
41 TIGR02033 D-hydantoinase D-hyd 99.8 2E-16 4.3E-21 168.3 25.3 61 47-113 1-61 (454)
42 COG1228 HutI Imidazolonepropio 99.7 9.8E-18 2.1E-22 173.8 11.2 116 361-505 215-334 (406)
43 KOG3968 Atrazine chlorohydrola 99.7 4.4E-17 9.4E-22 162.6 14.6 119 362-498 216-342 (439)
44 PRK08323 phenylhydantoinase; V 99.7 4.3E-16 9.3E-21 166.0 23.0 59 45-113 1-59 (459)
45 PRK12394 putative metallo-depe 99.7 5.4E-16 1.2E-20 161.1 22.7 64 45-113 3-66 (379)
46 cd01314 D-HYD D-hydantoinases 99.7 1.6E-15 3.4E-20 161.1 24.6 61 47-113 1-61 (447)
47 PRK15446 phosphonate metabolis 99.7 5.3E-16 1.1E-20 161.0 19.2 281 44-480 1-306 (383)
48 PRK09357 pyrC dihydroorotase; 99.7 3.1E-15 6.7E-20 157.8 24.0 63 45-113 1-63 (423)
49 PRK06886 hypothetical protein; 99.7 6.2E-15 1.4E-19 148.8 19.6 227 237-497 59-300 (329)
50 TIGR02318 phosphono_phnM phosp 99.6 1.5E-14 3.1E-19 149.8 18.3 93 363-480 206-301 (376)
51 cd01297 D-aminoacylase D-amino 99.6 1.9E-14 4E-19 151.4 18.4 64 46-114 1-64 (415)
52 TIGR01975 isoAsp_dipep isoaspa 99.6 5.6E-14 1.2E-18 145.6 19.9 66 47-114 2-67 (389)
53 PRK13207 ureC urease subunit a 99.6 9.8E-14 2.1E-18 147.4 21.6 69 43-113 65-139 (568)
54 TIGR03178 allantoinase allanto 99.6 3.6E-13 7.8E-18 142.8 24.7 61 46-113 1-61 (443)
55 cd01315 L-HYD_ALN L-Hydantoina 99.6 7.2E-13 1.6E-17 140.8 26.7 62 46-113 1-62 (447)
56 PRK10657 isoaspartyl dipeptida 99.6 1.3E-13 2.8E-18 143.8 19.6 66 45-113 1-66 (388)
57 PRK13309 ureC urease subunit a 99.6 3.2E-13 6.9E-18 143.9 22.1 69 44-113 67-143 (572)
58 PRK13206 ureC urease subunit a 99.6 2.6E-13 5.6E-18 143.9 21.2 69 43-113 69-145 (573)
59 PRK06189 allantoinase; Provisi 99.6 1.5E-12 3.3E-17 138.3 26.7 63 44-113 2-64 (451)
60 PRK09236 dihydroorotase; Revie 99.5 5E-13 1.1E-17 141.8 20.7 65 44-114 1-65 (444)
61 PLN02795 allantoinase 99.5 6.5E-12 1.4E-16 134.9 26.5 84 26-113 22-109 (505)
62 PRK07627 dihydroorotase; Provi 99.5 6.5E-12 1.4E-16 132.2 23.2 66 45-114 1-66 (425)
63 PRK13404 dihydropyrimidinase; 99.5 6.2E-12 1.3E-16 134.4 22.7 61 45-113 4-64 (477)
64 PRK02382 dihydroorotase; Provi 99.5 1.8E-11 3.8E-16 129.9 25.2 64 44-113 1-64 (443)
65 PRK09237 dihydroorotase; Provi 99.5 2.7E-12 5.8E-17 133.5 18.5 63 47-113 1-63 (380)
66 PRK07575 dihydroorotase; Provi 99.4 2.5E-12 5.4E-17 136.1 17.7 65 44-113 2-66 (438)
67 TIGR01792 urease_alph urease, 99.4 1.3E-11 2.9E-16 131.5 20.8 68 43-112 64-137 (567)
68 cd01320 ADA Adenosine deaminas 99.4 6.3E-12 1.4E-16 127.9 17.0 212 240-498 66-289 (325)
69 PRK09059 dihydroorotase; Valid 99.4 3.1E-11 6.8E-16 127.2 21.9 69 44-113 2-70 (429)
70 PRK07369 dihydroorotase; Provi 99.4 7.2E-11 1.6E-15 124.0 24.5 67 44-113 1-67 (418)
71 PRK09060 dihydroorotase; Valid 99.4 4.7E-11 1E-15 126.6 23.3 63 44-113 4-66 (444)
72 cd00375 Urease_alpha Urease al 99.4 3.8E-11 8.2E-16 127.0 21.9 69 43-113 63-139 (567)
73 cd01309 Met_dep_hydrolase_C Me 99.4 6.3E-13 1.4E-17 137.1 8.4 100 367-482 181-282 (359)
74 PRK13308 ureC urease subunit a 99.4 7.1E-11 1.5E-15 125.0 22.8 70 43-113 66-143 (569)
75 COG0044 PyrC Dihydroorotase an 99.4 4.6E-11 1E-15 124.8 21.2 66 45-116 1-66 (430)
76 PRK09061 D-glutamate deacylase 99.4 2.9E-11 6.3E-16 130.0 19.3 64 44-113 18-81 (509)
77 PRK08044 allantoinase; Provisi 99.4 1.8E-10 3.9E-15 122.2 24.5 61 45-113 3-63 (449)
78 TIGR01178 ade adenine deaminas 99.3 2.3E-10 5E-15 123.6 21.8 60 46-113 1-60 (552)
79 PRK09358 adenosine deaminase; 99.3 4.7E-11 1E-15 122.3 13.1 119 363-500 179-300 (340)
80 PRK13985 ureB urease subunit b 99.3 3.1E-10 6.6E-15 119.8 19.0 70 42-113 62-139 (568)
81 cd01307 Met_dep_hydrolase_B Me 99.2 1.5E-10 3.3E-15 118.5 15.1 92 367-483 150-255 (338)
82 TIGR01430 aden_deam adenosine 99.2 4E-10 8.7E-15 114.7 17.3 214 240-500 65-290 (324)
83 cd01292 metallo-dependent_hydr 99.2 4.2E-10 9.2E-15 110.0 16.3 213 239-500 27-253 (275)
84 TIGR03121 one_C_dehyd_A formyl 99.2 2.1E-09 4.6E-14 114.2 21.4 65 47-117 2-67 (556)
85 KOG2584 Dihydroorotase and rel 99.2 1.2E-09 2.6E-14 109.5 16.7 65 45-115 14-78 (522)
86 COG3964 Predicted amidohydrola 99.1 1.9E-09 4E-14 103.7 16.5 68 44-116 3-70 (386)
87 cd00854 NagA N-acetylglucosami 99.1 3.5E-09 7.6E-14 109.9 19.0 61 47-113 1-61 (374)
88 PRK08417 dihydroorotase; Provi 99.1 4.5E-09 9.7E-14 109.5 17.7 40 67-113 1-40 (386)
89 cd01308 Isoaspartyl-dipeptidas 99.1 1.3E-08 2.8E-13 106.2 20.9 63 47-113 2-64 (387)
90 PLN02303 urease 99.1 8.1E-09 1.8E-13 113.1 19.2 68 44-113 333-408 (837)
91 PF13594 Amidohydro_5: Amidohy 99.1 1.5E-10 3.3E-15 89.7 4.2 44 67-113 1-44 (68)
92 TIGR00857 pyrC_multi dihydroor 99.0 3.3E-08 7.2E-13 103.9 23.0 46 63-113 4-49 (411)
93 PRK04250 dihydroorotase; Provi 99.0 4.5E-08 9.9E-13 102.2 21.7 56 50-113 2-57 (398)
94 cd01304 FMDH_A Formylmethanofu 99.0 2.3E-08 5E-13 105.9 18.7 62 49-117 1-63 (541)
95 COG1820 NagA N-acetylglucosami 99.0 2.4E-09 5.2E-14 108.0 10.1 121 47-175 2-157 (380)
96 TIGR00221 nagA N-acetylglucosa 98.9 6.6E-09 1.4E-13 107.6 12.0 66 45-115 3-68 (380)
97 PRK10027 cryptic adenine deami 98.9 1.1E-08 2.4E-13 110.9 12.9 75 39-117 24-98 (588)
98 PRK01211 dihydroorotase; Provi 98.9 1.3E-07 2.7E-12 99.1 19.2 55 51-115 4-58 (409)
99 cd01317 DHOase_IIa Dihydroorot 98.8 3.2E-07 6.9E-12 95.3 20.5 24 91-114 2-25 (374)
100 PRK00369 pyrC dihydroorotase; 98.8 5.3E-07 1.2E-11 93.9 21.7 46 64-115 13-59 (392)
101 cd01295 AdeC Adenine deaminase 98.8 1.1E-07 2.5E-12 100.2 16.7 93 364-481 119-212 (422)
102 TIGR03583 EF_0837 probable ami 98.8 8.7E-09 1.9E-13 106.7 6.5 61 45-115 1-62 (365)
103 PF01979 Amidohydro_1: Amidohy 98.8 8E-08 1.7E-12 97.5 13.2 118 361-481 139-283 (333)
104 COG3653 N-acyl-D-aspartate/D-g 98.7 1.3E-08 2.9E-13 102.0 5.3 67 45-114 6-72 (579)
105 PRK11170 nagA N-acetylglucosam 98.7 3E-08 6.5E-13 102.9 7.5 64 47-115 2-65 (382)
106 cd00443 ADA_AMPD Adenosine/AMP 98.7 6E-07 1.3E-11 90.6 16.1 203 241-484 40-258 (305)
107 cd01318 DHOase_IIb Dihydroorot 98.6 1.5E-06 3.2E-11 89.8 17.9 108 363-481 108-251 (361)
108 COG1001 AdeC Adenine deaminase 98.6 5.4E-08 1.2E-12 102.5 6.7 75 36-116 15-90 (584)
109 COG3454 Metal-dependent hydrol 98.6 5E-07 1.1E-11 88.1 11.2 57 47-111 1-57 (377)
110 cd01302 Cyclic_amidohydrolases 98.5 8.1E-06 1.8E-10 83.6 18.3 106 362-482 111-229 (337)
111 PTZ00124 adenosine deaminase; 98.4 3.8E-06 8.2E-11 86.3 13.7 198 241-483 100-313 (362)
112 cd01321 ADGF Adenosine deamina 98.2 2.3E-05 4.9E-10 80.3 13.9 103 364-483 177-289 (345)
113 COG0804 UreC Urea amidohydrola 98.2 8.3E-05 1.8E-09 74.7 16.1 70 42-113 64-139 (568)
114 PF00962 A_deaminase: Adenosin 98.1 2.3E-05 4.9E-10 80.0 12.3 201 241-483 72-284 (331)
115 COG1229 FwdA Formylmethanofura 98.0 1.5E-05 3.2E-10 80.1 6.7 65 45-115 3-68 (575)
116 COG1816 Add Adenosine deaminas 97.9 2.6E-05 5.6E-10 78.9 7.1 106 362-483 181-289 (345)
117 cd01306 PhnM PhnM is believed 97.9 0.00029 6.3E-09 71.4 14.7 97 362-481 159-256 (325)
118 cd01316 CAD_DHOase The eukaryo 97.9 0.00097 2.1E-08 68.4 18.4 63 373-445 119-186 (344)
119 cd00530 PTE Phosphotriesterase 97.4 0.0017 3.7E-08 64.9 12.5 113 363-485 133-250 (293)
120 TIGR01431 adm_rel adenosine de 97.4 0.00036 7.7E-09 74.4 7.2 103 364-483 304-415 (479)
121 KOG1097 Adenine deaminase/aden 96.5 0.0045 9.8E-08 63.2 6.3 100 365-483 226-332 (399)
122 KOG3892 N-acetyl-glucosamine-6 96.5 0.0048 1E-07 59.2 6.1 63 47-113 14-76 (407)
123 cd01294 DHOase Dihydroorotase 96.3 0.35 7.6E-06 49.4 18.9 165 248-445 18-197 (335)
124 PF13147 Amidohydro_4: Amidohy 95.6 0.004 8.8E-08 61.1 0.8 39 461-502 225-264 (304)
125 PF02126 PTE: Phosphotriestera 95.2 0.42 9.2E-06 48.2 13.7 162 246-438 37-212 (308)
126 TIGR00856 pyrC_dimer dihydroor 95.1 0.7 1.5E-05 47.4 15.2 171 247-445 17-200 (341)
127 TIGR00010 hydrolase, TatD fami 94.8 0.82 1.8E-05 44.2 14.4 70 364-441 106-175 (252)
128 TIGR01429 AMP_deaminase AMP de 94.3 0.078 1.7E-06 57.7 6.2 91 373-483 429-525 (611)
129 PLN02599 dihydroorotase 93.9 2.8 6.1E-05 43.3 16.5 78 364-445 134-222 (364)
130 PRK09875 putative hydrolase; P 93.8 0.77 1.7E-05 46.0 11.6 71 364-439 137-209 (292)
131 PLN03055 AMP deaminase; Provis 93.3 0.081 1.8E-06 57.4 4.1 90 374-483 408-503 (602)
132 cd01319 AMPD AMP deaminase (AM 93.1 0.11 2.4E-06 55.5 4.5 91 373-483 317-413 (496)
133 PF01026 TatD_DNase: TatD rela 92.1 0.54 1.2E-05 46.1 7.8 74 363-443 108-181 (255)
134 PF00449 Urease_alpha: Urease 91.7 0.4 8.7E-06 40.3 5.3 36 44-81 65-100 (121)
135 PRK10425 DNase TatD; Provision 91.4 0.8 1.7E-05 45.0 8.1 71 365-442 107-177 (258)
136 PLN02768 AMP deaminase 91.2 0.19 4.2E-06 55.9 3.8 88 376-483 643-736 (835)
137 COG1735 Php Predicted metal-de 90.8 11 0.00023 37.7 14.9 72 364-439 150-223 (316)
138 cd01310 TatD_DNAse TatD like p 90.8 1.3 2.8E-05 42.7 8.9 71 364-442 106-176 (251)
139 COG0084 TatD Mg-dependent DNas 90.3 1.2 2.6E-05 43.6 8.1 72 364-443 110-181 (256)
140 PRK11449 putative deoxyribonuc 90.0 1.2 2.5E-05 43.9 7.7 71 364-442 112-182 (258)
141 PTZ00310 AMP deaminase; Provis 88.9 0.39 8.5E-06 56.7 4.0 98 366-483 1093-1196(1453)
142 PRK10812 putative DNAse; Provi 88.3 2.4 5.3E-05 41.8 8.8 71 364-441 109-179 (265)
143 PF12890 DHOase: Dihydro-orota 88.0 0.18 3.9E-06 43.6 0.4 20 98-117 1-20 (142)
144 PTZ00310 AMP deaminase; Provis 80.5 1.8 3.9E-05 51.4 4.3 92 373-483 470-567 (1453)
145 COG0502 BioB Biotin synthase a 77.4 31 0.00066 35.2 11.4 72 360-435 81-156 (335)
146 COG0418 PyrC Dihydroorotase [N 75.1 23 0.0005 35.3 9.5 96 329-444 96-202 (344)
147 PRK05451 dihydroorotase; Provi 74.1 13 0.00028 38.1 8.1 79 364-446 116-204 (345)
148 COG1099 Predicted metal-depend 73.6 15 0.00031 35.1 7.4 72 364-442 112-188 (254)
149 PF04909 Amidohydro_2: Amidohy 65.3 15 0.00033 35.4 6.2 68 369-438 120-196 (273)
150 KOG3020 TatD-related DNase [Re 64.5 24 0.00051 35.3 7.2 72 365-442 134-205 (296)
151 cd01301 rDP_like renal dipepti 64.2 40 0.00086 34.1 9.0 64 366-440 154-227 (309)
152 cd01294 DHOase Dihydroorotase 58.2 6.2 0.00013 40.2 2.0 14 101-114 2-15 (335)
153 TIGR03550 F420_cofG 7,8-dideme 57.1 51 0.0011 33.4 8.4 75 361-440 33-127 (322)
154 TIGR01496 DHPS dihydropteroate 55.4 48 0.001 32.5 7.7 62 368-441 63-126 (257)
155 cd01317 DHOase_IIa Dihydroorot 55.0 17 0.00037 37.6 4.7 102 361-484 166-270 (374)
156 PRK07114 keto-hydroxyglutarate 52.0 68 0.0015 30.7 7.8 77 363-443 24-101 (222)
157 TIGR01182 eda Entner-Doudoroff 50.5 71 0.0015 30.2 7.6 73 363-443 17-90 (204)
158 PF05673 DUF815: Protein of un 48.6 2E+02 0.0043 28.1 10.4 85 332-430 127-223 (249)
159 PRK10076 pyruvate formate lyas 48.6 53 0.0012 31.2 6.6 32 359-390 47-78 (213)
160 PRK06015 keto-hydroxyglutarate 48.1 1E+02 0.0022 29.0 8.3 72 363-442 13-85 (201)
161 PRK08445 hypothetical protein; 47.8 26 0.00057 36.0 4.6 75 361-436 71-157 (348)
162 cd01311 PDC_hydrolase 2-pyrone 47.7 1E+02 0.0022 30.0 8.7 51 364-422 108-158 (263)
163 PRK09613 thiH thiamine biosynt 47.2 1.1E+02 0.0024 32.9 9.3 74 361-436 113-193 (469)
164 PRK06552 keto-hydroxyglutarate 45.7 1.3E+02 0.0028 28.6 8.7 76 363-443 22-98 (213)
165 KOG0207 Cation transport ATPas 45.4 1E+02 0.0023 35.4 9.0 51 88-143 431-481 (951)
166 PRK08508 biotin synthase; Prov 44.9 3.2E+02 0.0069 27.0 11.9 71 362-435 39-114 (279)
167 PRK15108 biotin synthase; Prov 44.6 1.2E+02 0.0026 31.1 8.9 69 362-435 75-148 (345)
168 PRK06256 biotin synthase; Vali 42.7 1.4E+02 0.003 30.3 9.0 71 362-436 90-165 (336)
169 COG0076 GadB Glutamate decarbo 41.0 97 0.0021 33.2 7.8 210 175-441 155-371 (460)
170 PRK14057 epimerase; Provisiona 40.7 2.6E+02 0.0057 27.4 10.0 85 324-442 46-143 (254)
171 COG2185 Sbm Methylmalonyl-CoA 40.4 1.6E+02 0.0034 26.2 7.6 76 363-443 50-125 (143)
172 PTZ00413 lipoate synthase; Pro 40.3 1.4E+02 0.003 31.1 8.4 72 361-436 175-255 (398)
173 COG0800 Eda 2-keto-3-deoxy-6-p 40.1 1.7E+02 0.0037 27.7 8.3 72 364-443 23-95 (211)
174 PRK09234 fbiC FO synthase; Rev 37.8 1.7E+02 0.0037 34.0 9.5 72 360-436 99-190 (843)
175 PRK09140 2-dehydro-3-deoxy-6-p 37.0 2E+02 0.0043 27.2 8.4 73 363-442 19-92 (206)
176 PRK09234 fbiC FO synthase; Rev 36.1 1.4E+02 0.003 34.7 8.4 71 360-436 554-641 (843)
177 PF07287 DUF1446: Protein of u 35.9 1.2E+02 0.0025 31.4 7.1 107 365-478 57-166 (362)
178 COG1856 Uncharacterized homolo 35.4 2E+02 0.0044 27.6 7.9 74 362-439 38-116 (275)
179 KOG2902 Dihydroorotase [Nucleo 35.1 81 0.0017 30.5 5.3 77 366-444 117-202 (344)
180 TIGR01235 pyruv_carbox pyruvat 35.0 8.5E+02 0.018 29.5 14.9 39 363-401 715-756 (1143)
181 PRK06233 hypothetical protein; 34.7 47 0.001 34.4 4.2 40 98-151 297-336 (372)
182 TIGR03551 F420_cofH 7,8-dideme 34.5 1.5E+02 0.0032 30.3 7.7 70 362-437 69-155 (343)
183 PRK09240 thiH thiamine biosynt 34.3 1.7E+02 0.0037 30.3 8.2 69 361-435 102-175 (371)
184 PRK13404 dihydropyrimidinase; 33.7 46 0.00099 35.8 4.0 97 364-482 219-320 (477)
185 cd07937 DRE_TIM_PC_TC_5S Pyruv 33.6 4.7E+02 0.01 25.7 15.3 39 363-401 175-216 (275)
186 PRK08444 hypothetical protein; 33.4 2.1E+02 0.0046 29.5 8.6 70 361-435 78-163 (353)
187 PF01081 Aldolase: KDPG and KH 33.4 1.1E+02 0.0024 28.7 6.0 72 364-443 18-90 (196)
188 PRK14042 pyruvate carboxylase 33.0 7.2E+02 0.016 27.6 14.5 120 247-401 96-221 (596)
189 PRK05718 keto-hydroxyglutarate 32.7 1.8E+02 0.0039 27.6 7.4 73 363-443 24-97 (212)
190 PRK12330 oxaloacetate decarbox 32.1 6.9E+02 0.015 27.1 14.3 39 363-401 181-224 (499)
191 TIGR00433 bioB biotin syntheta 31.7 2.7E+02 0.0059 27.4 9.0 71 362-436 61-136 (296)
192 PRK07360 FO synthase subunit 2 31.6 2.3E+02 0.005 29.3 8.6 70 362-437 90-177 (371)
193 PRK11858 aksA trans-homoaconit 31.3 6.1E+02 0.013 26.3 13.6 28 239-266 108-135 (378)
194 TIGR02351 thiH thiazole biosyn 30.1 1.9E+02 0.0041 29.9 7.7 69 361-435 101-174 (366)
195 TIGR00221 nagA N-acetylglucosa 29.9 6.2E+02 0.013 26.3 11.5 22 247-268 77-98 (380)
196 PF06415 iPGM_N: BPG-independe 29.7 96 0.0021 29.7 4.9 44 364-407 44-94 (223)
197 COG4954 Uncharacterized protei 29.4 89 0.0019 26.0 4.0 50 336-385 27-85 (135)
198 PF01244 Peptidase_M19: Membra 28.8 86 0.0019 31.8 4.8 69 367-441 161-234 (320)
199 PLN02428 lipoic acid synthase 28.6 3.6E+02 0.0077 27.8 9.2 70 362-436 129-208 (349)
200 COG5016 Pyruvate/oxaloacetate 28.1 5E+02 0.011 27.3 9.9 49 248-304 99-147 (472)
201 COG2355 Zn-dependent dipeptida 28.0 1.4E+02 0.003 30.2 6.0 70 368-442 151-226 (313)
202 PRK06245 cofG FO synthase subu 27.6 2.1E+02 0.0046 29.0 7.5 77 362-440 40-132 (336)
203 PRK13397 3-deoxy-7-phosphohept 26.1 5.1E+02 0.011 25.3 9.3 87 332-429 43-141 (250)
204 PLN02389 biotin synthase 25.8 3.9E+02 0.0084 27.8 9.1 70 361-435 114-190 (379)
205 PRK05927 hypothetical protein; 25.4 2.3E+02 0.0049 29.2 7.2 73 361-434 74-158 (350)
206 PRK14040 oxaloacetate decarbox 25.2 9.7E+02 0.021 26.6 14.5 39 363-401 181-222 (593)
207 PLN02460 indole-3-glycerol-pho 24.7 4.6E+02 0.01 26.8 9.0 78 362-439 213-316 (338)
208 TIGR00640 acid_CoA_mut_C methy 24.1 4.7E+02 0.01 22.6 8.2 76 363-443 40-115 (132)
209 PF01212 Beta_elim_lyase: Beta 23.3 72 0.0016 31.9 3.0 27 359-385 138-164 (290)
210 PRK05926 hypothetical protein; 23.3 4.1E+02 0.0089 27.5 8.7 70 360-436 96-182 (370)
211 PF13147 Amidohydro_4: Amidohy 23.3 2E+02 0.0044 27.3 6.3 17 95-111 1-17 (304)
212 TIGR02493 PFLA pyruvate format 23.2 1.5E+02 0.0032 28.2 5.1 30 359-388 74-103 (235)
213 TIGR02660 nifV_homocitr homoci 23.1 8.3E+02 0.018 25.1 13.7 26 240-265 106-131 (365)
214 TIGR03700 mena_SCO4494 putativ 22.9 4.1E+02 0.0089 27.2 8.6 70 362-436 78-163 (351)
215 PRK02308 uvsE putative UV dama 22.9 3.9E+02 0.0084 26.9 8.2 24 364-387 128-155 (303)
216 COG1168 MalY Bifunctional PLP- 22.6 99 0.0021 32.0 3.8 33 354-386 166-201 (388)
217 PRK14041 oxaloacetate decarbox 22.2 9.9E+02 0.022 25.7 13.6 39 363-401 179-220 (467)
218 PF13188 PAS_8: PAS domain; PD 22.1 73 0.0016 23.1 2.2 25 177-202 12-36 (64)
219 PF13426 PAS_9: PAS domain; PD 21.8 70 0.0015 24.9 2.2 26 178-203 3-28 (104)
220 COG0826 Collagenase and relate 21.7 4.4E+02 0.0095 27.1 8.4 26 361-386 44-69 (347)
221 COG0134 TrpC Indole-3-glycerol 21.6 7.5E+02 0.016 24.2 9.5 80 362-441 139-237 (254)
222 PLN03228 methylthioalkylmalate 21.5 1.1E+03 0.023 25.7 13.2 24 239-262 201-224 (503)
223 cd02072 Glm_B12_BD B12 binding 21.4 5.4E+02 0.012 22.3 7.7 72 363-442 37-117 (128)
224 cd03329 MR_like_4 Mandelate ra 21.2 5.2E+02 0.011 26.5 9.1 79 363-442 142-225 (368)
225 COG0036 Rpe Pentose-5-phosphat 20.8 7.5E+02 0.016 23.7 11.0 87 323-442 29-120 (220)
226 TIGR00262 trpA tryptophan synt 20.3 7.4E+02 0.016 24.1 9.4 71 364-442 70-151 (256)
227 PRK07094 biotin synthase; Prov 20.2 4.4E+02 0.0096 26.4 8.2 71 362-436 69-142 (323)
228 PRK12331 oxaloacetate decarbox 20.1 1.1E+03 0.023 25.2 13.8 39 363-401 180-221 (448)
No 1
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=2.6e-79 Score=644.51 Aligned_cols=444 Identities=34% Similarity=0.545 Sum_probs=392.1
Q ss_pred CcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccc
Q 010613 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (506)
Q Consensus 43 ~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~ 122 (506)
..+|+|++||+|||+++..+.+++|+|+||||++||+++++..+.++.+++||++|++|+|||||+|.|+..+|+....+
T Consensus 3 ~~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~~~~ 82 (535)
T COG1574 3 MAADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLEL 82 (535)
T ss_pred cccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHHhhhhhhcc
Confidence 45799999999999998899999999999999999999999988889999999999999999999999999999888778
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCeEEE--ecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcC
Q 010613 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILG--GGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (506)
Q Consensus 123 ~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g--~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~g 200 (506)
++.++.+.+++.+++++.++..++++|+.+ ++|+...|.++.|++.+||+++|++||++.+.|+|.+|+||+||+++|
T Consensus 83 ~~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~G 162 (535)
T COG1574 83 NLDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAG 162 (535)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcC
Confidence 888999999999999999999999987765 555666677779999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHH-HHHHHHhcCcceEEeCccCCCCCcccCc
Q 010613 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLR-ASNLALSRGVTTVVDFGRYYPGESVQLS 279 (506)
Q Consensus 201 i~~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~-~~~~~~~~GiTsv~d~~~~~~g~~~~~~ 279 (506)
|++.+|+|+||.|+||++|+|||+|.|.++.++...+|..+.++..+.... +++++++.|||+++||.. +. ..
T Consensus 163 i~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~-~~-----~~ 236 (535)
T COG1574 163 ITRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAG-YQ-----GY 236 (535)
T ss_pred CCCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccc-cc-----cc
Confidence 999999999999889999999999999999999999988777766655544 999999999999999984 10 11
Q ss_pred hHHHHHHHHHHHhcCCCeeEEEEccCccchhhHHHHHH-hcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCC
Q 010613 280 WEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLIN-KTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (506)
Q Consensus 280 ~~~~~~~~~~l~~~g~l~~Rv~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~ 358 (506)
..++ .+|+.+...|+|++|+..++....... +... ........+++.+++|+|.||+++++||++.+||.|.|+.+
T Consensus 237 ~~~~-~~~r~~~~~~~l~~rv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~ 313 (535)
T COG1574 237 YADY-EAYRALAAGGELPVRVALLLFTEDLKE--ERLDLLRQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPS 313 (535)
T ss_pred hhHH-HHHHHHHhcCcceEEEEeeccccchhh--HHHhhcccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCC
Confidence 2333 789999999999999998776544322 1111 11122357899999999999999999999999999999888
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEe
Q 010613 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASM 438 (506)
Q Consensus 359 G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~ 438 (506)
|.+.+++++|+++++.|.++|+++++||+||+|++.+|++||++.+++|..+.||+|+|+++++|++++||+++|+++++
T Consensus 314 G~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~sv 393 (535)
T COG1574 314 GELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASV 393 (535)
T ss_pred CCcccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEee
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cchhHh-hhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHHH
Q 010613 439 QVWTTF-WQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIFT 500 (506)
Q Consensus 439 ~P~~~~-~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~~ 500 (506)
||.|.+ |..++. +++|.++.+..+|+++|+++|+.|++| |+| +.++|||..++++++
T Consensus 394 QP~f~~~~~~~~~-~rlG~~r~~~~~p~~~ll~~G~~la~gSD~P----v~~~dP~~~i~~AVt 452 (535)
T COG1574 394 QPNFLFSDGEWYV-DRLGEERASRSYPFRSLLKAGVPLAGGSDAP----VEPYDPWLGIYAAVT 452 (535)
T ss_pred ccccccccchHHH-HhhhhhhhhccCcHHHHHHCCCeEeccCCCC----CCCCChHHHHHHHHc
Confidence 999975 333333 368988888999999999999999999 876 578899888755544
No 2
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=100.00 E-value=5.1e-69 Score=574.91 Aligned_cols=418 Identities=38% Similarity=0.589 Sum_probs=362.5
Q ss_pred EEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q 010613 66 SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSK 145 (506)
Q Consensus 66 av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l~~~~s~~~~~~~l~~~~~~~~ 145 (506)
+|+|+||||++||+..++.++.++.++++|++|++|+|||||+|+|+..++.....+++.++.|.+++++++++.++..+
T Consensus 1 a~~v~~g~i~~vg~~~~~~~~~~~~~~~~d~~~~~~~PGfiD~H~H~~~~~~~~~~~~l~~~~s~~e~~~~l~~~~~~~~ 80 (479)
T cd01300 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLSGVTSKEEALARIREDAAAAP 80 (479)
T ss_pred CeEEECCEEEEECCHHHHHhhcCCCcEEEECCCCEEccCcccccccchhhcccceeecCCCCCCHHHHHHHHHHHHHhCC
Confidence 58899999999999877776667788999999999999999999999988888888999999999999999999988889
Q ss_pred CCCeEEEecCCCCCcC-CCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCCCCCCCCCeeeeCCCCCcCEe
Q 010613 146 KGSWILGGGWNNDLWG-GDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGL 224 (506)
Q Consensus 146 ~~~wi~g~g~~~~~~~-~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~~~~p~gg~i~rd~~G~~tG~ 224 (506)
+++||+|+||++..++ ++.|++++||++++++||+|.+.|+|.+|+||+||+++||+.++++|.||.|+||++|+|||+
T Consensus 81 ~~~wi~~~g~~~~~~~~~~~p~~~~LD~~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~~~~~~~~~g~~~~~~~g~~tG~ 160 (479)
T cd01300 81 PGEWILGFGWDESLLGEGRYPTRAELDAVSPDRPVLLLRRDGHSAWVNSAALRLAGITRDTPDPPGGEIVRDADGEPTGV 160 (479)
T ss_pred CCCeEEECCcCHHHcCCCCCCCHHHHhcccCCCcEEEEccCchHHHHHHHHHHHcCCCCCCCCCCCCEEeeCCCCCccEE
Confidence 9999999999999885 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred EhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEcc
Q 010613 225 LIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFF 304 (506)
Q Consensus 225 l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~ 304 (506)
|.|.++..+...+|..+.+++.+.++.+++.++++|||+++|+... ....+++|+++.++|++++|+..+.
T Consensus 161 l~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiT~v~d~~~~---------~~~~~~~~~~l~~~~~l~~rv~~~~ 231 (479)
T cd01300 161 LVEAAAALVLEAVPPPTPEERRAALRAAARELASLGVTTVHDAGGG---------AADDIEAYRRLAAAGELTLRVRVAL 231 (479)
T ss_pred EeHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCC---------hhhHHHHHHHHHHCCCCeEEEEEEe
Confidence 9999988888888999999999999999999999999999998631 1121378999999999999988654
Q ss_pred Cccchh--hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeE
Q 010613 305 PLETWS--SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQV 382 (506)
Q Consensus 305 ~~~~~~--~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v 382 (506)
...... ...+.......+.+++++++++|+|+||+++++||+|.+||.+.++.+|.+.+++++++++++.|+++|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vKl~~DG~~~~~ta~l~~pY~~~~~~~g~~~~~~e~l~~~~~~a~~~g~~v 311 (479)
T cd01300 232 YVSPLAEDLLEELGARKNGAGDDRLRLGGVKLFADGSLGSRTAALSEPYLDSPGTGGLLLISPEELEELVRAADEAGLQV 311 (479)
T ss_pred ccccchhhhhhHHhhhccCCCCCcEEEeeEEEEEcCCCCcccccccCCcCCCCCCCCCccCCHHHHHHHHHHHHHCCCCE
Confidence 332211 111111112233468999999999999999999999999999988889999999999999999999999999
Q ss_pred EEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchhHhh-hhhcCccccccccccc
Q 010613 383 AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTTFW-QSIVNPLLISTDVWNF 461 (506)
Q Consensus 383 ~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~~~-~~~~~~~~~g~~~~~~ 461 (506)
++|++||++++.++++++++..+.|..+.|++|+||++++++++++|+++|+.+++||.+.++ ++......+|.++.++
T Consensus 312 ~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~P~~~~~~~~~~~~~~lg~~~~~~ 391 (479)
T cd01300 312 AIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNHLYSDGDAAEDRRLGEERAKR 391 (479)
T ss_pred EEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeCcccccCchHHHHHhcccHHHHhc
Confidence 999999999999999999998888888899999999999999999999999999999998642 2221100145555678
Q ss_pred cccccchhccccccccc-cccccccccCCCCCcchh
Q 010613 462 RYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFS 496 (506)
Q Consensus 462 ~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~ 496 (506)
.+|+++++++|+++++| |++.+ +.+||..+.
T Consensus 392 ~~p~~~~~~~Gv~v~lGSD~~~~----~~~p~~~~~ 423 (479)
T cd01300 392 SYPFRSLLDAGVPVALGSDAPVA----PPDPLLGIW 423 (479)
T ss_pred CchHHHHHHCCCeeeccCCCCCC----CCCHHHHHH
Confidence 89999999999999999 98643 456655543
No 3
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=100.00 E-value=9.1e-44 Score=372.20 Aligned_cols=333 Identities=37% Similarity=0.525 Sum_probs=272.6
Q ss_pred eeeccccccccccccccccc-ccccCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcC-CCCC-Chhhh--hhhC
Q 010613 100 VVVPGFIDSHVHFIPGGLQM-ARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWG-GDLP-MASWI--DDIT 174 (506)
Q Consensus 100 ~v~PGfiD~H~H~~~~g~~~-~~~~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~-~~~p-~~~~L--d~~~ 174 (506)
+|+|||||+|+|+...+... ..+++.+..|.+++.+.|+++.++ .|+||....+. ++.| ++++| |+++
T Consensus 1 ~v~PGfiD~H~H~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~-------~~~g~~~~~~~~~~~~~~~~~L~~D~~~ 73 (404)
T PF07969_consen 1 TVMPGFIDSHTHLDSAGLWDPRSVDLSGQGSIDEILCGIRAAAAK-------VGFGWDESLFPEGRLPPTREELPWDEAS 73 (404)
T ss_dssp EEEE-EEEEEEEHTTHHHHHTCSECHCTTTCCCCHHCCHHT-SSS-------EEEEEHHHHHCCSSTCTCHHHHHCTTSS
T ss_pred CCccChhHHhhChHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHh-------ccCCCCHHHhhcccccCCHHHhhhhhHh
Confidence 58999999999998877765 678888888999999999987654 88899888774 5677 99999 9999
Q ss_pred CCCeEEEEecCCchhhhcHHHHHHcCCCCCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCC--CCHHHHHHHHHHH
Q 010613 175 PHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPE--VSVDERREALLRA 252 (506)
Q Consensus 175 ~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~--~s~~~~~~~~~~~ 252 (506)
+++||++.+.++|.+|+||+||++ .+|.|||+|+|.++......+|. .+.+++++.++.+
T Consensus 74 ~~~Pv~~~~~~~h~~~~Ns~al~~------------------~~g~~~G~l~e~a~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (404)
T PF07969_consen 74 PDRPVFIRRFDGHSAWLNSAALEL------------------ADGEPTGILREAAMVLGWRAIPATAAELEEMREALREA 135 (404)
T ss_dssp SSSHEEEEECCCSEEEECHHHHHH------------------TEETTCCEEEHHHHHHCCHHHHHTHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCcChHHHHhHHHhhc------------------cccCCceeeehhhhhhHHhhCccccCCHHHHHHHHHHH
Confidence 999999999999999999999998 46899999999998767766665 6778888999999
Q ss_pred HHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEccCccchhhHHHHHHhcCCcCCCcEEEceE
Q 010613 253 SNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGV 332 (506)
Q Consensus 253 ~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 332 (506)
...+++.|||++.|+... .....+..+.++++.++++|++|+.++. +++++
T Consensus 136 ~~~~~a~GiTt~~d~~~~------~~~~~~~~~~~~~l~~~~~l~~rv~~~~-----------------------~~~~v 186 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYGGG------FASDPEDLEALRELAAEGGLPLRVHLYP-----------------------RIGGV 186 (404)
T ss_dssp HHHHCHTCEEEETTCECC------CGEHHHHHHHHHHHHHCTC--SEEEEEE-----------------------EEEEE
T ss_pred HHHhcCCCeEEecCCccc------cCCCHHHHHHHHHHhhhcCCCeeeeeec-----------------------ccCce
Confidence 999999999999998721 1123455588999999999999998654 67899
Q ss_pred EEeecCCcCcccccccCC-cCCCC----CCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcC
Q 010613 333 KAFADGSLGSNSALFHEP-YADEP----HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTG 407 (506)
Q Consensus 333 Kl~~DG~~~~~ta~l~~p-Y~d~~----~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g 407 (506)
|+|.||+.+++++++..| |.+.+ +++|...++++++.+.++.|++.|+++++|++||.+++.+++++++...+
T Consensus 187 k~~~dg~~~~~~a~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~~-- 264 (404)
T PF07969_consen 187 KIFADGSPGGRTALLEEPYYADEPGAPVHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARAR-- 264 (404)
T ss_dssp EEESSSSTTHHHHHHHHHHHHHHHTSEEEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTCC--
T ss_pred eeccccccccchhhhccccccCcccccccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhccc--
Confidence 999999999999999999 65543 45788899999999999999999999999999999999999999987543
Q ss_pred CCCCCceEeecccCChhHHHHHHhCCCEEEecchhH-hhhhhcCccccccccccccccccchhccccccccc-ccccccc
Q 010613 408 KRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTT-FWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYM 485 (506)
Q Consensus 408 ~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~-~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~ 485 (506)
.+++|++++++++++|++++|+.+++||.+. +|........++.++.+...|+++++++|++|++| |++.
T Consensus 265 -----~~i~h~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gsD~p~--- 336 (404)
T PF07969_consen 265 -----GRIEHAELIDPDDIERMAELGVTASVQPHFLFSWGGEWYEERLGPERARRIYPIRSLLDAGVRVALGSDAPV--- 336 (404)
T ss_dssp -----HEEEEHCBCCHHHHHHHHHHTTEEEECCTHHHHETEETHHHHHHHHCGGGBTHHHHHHHCTTEEEE--TTTT---
T ss_pred -----ceeeccccCCHHHHHHHHHhCCccccChhHhhhccchhhhhhhhhHHHHHHhHHHHHHhccCceecCcCCcc---
Confidence 2999999999999999999999999999664 33311111235656677889999999999999999 9774
Q ss_pred ccCCCCCcchhh
Q 010613 486 LVTCRPRNNFSY 497 (506)
Q Consensus 486 ~~~~~~~~~~~~ 497 (506)
.+.+||..+..
T Consensus 337 -~~~~P~~~~~~ 347 (404)
T PF07969_consen 337 -SPPNPFRGIWA 347 (404)
T ss_dssp -SSCCHHHHHHH
T ss_pred -cccCcchhhhh
Confidence 46677755433
No 4
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.96 E-value=4.1e-27 Score=248.39 Aligned_cols=301 Identities=15% Similarity=0.175 Sum_probs=197.4
Q ss_pred ccEEEEcCEEEeCCCCC--ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~--~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~ 122 (506)
++++|+|+.|+|+++.. ..+++|+|+||+|++||+..... ..+..++||++|++|||||||+|+|+.+...
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~--~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~----- 73 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFAS--DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLL----- 73 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccc--cCCCCeEEeCCCCEEccceeecccCccchhh-----
Confidence 46799999999987543 35779999999999999853221 1245789999999999999999999875421
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhh-CCCCeEEEEecCCchhhhcHHHHHHcCC
Q 010613 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDI-TPHNPVWLSRMDGHMGLANSVALQLVGI 201 (506)
Q Consensus 123 ~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~-~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi 201 (506)
+ |+ ....+...||... .|
T Consensus 74 --r----------------------------g~-----~~~~~l~~wl~~~~~~-------------------------- 92 (435)
T PRK15493 74 --R----------------------------GI-----GDDMLLQPWLETRIWP-------------------------- 92 (435)
T ss_pred --h----------------------------cc-----CCCCCHHHHHHhchhh--------------------------
Confidence 1 10 0112333444321 11
Q ss_pred CCCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchH
Q 010613 202 TNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWE 281 (506)
Q Consensus 202 ~~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~ 281 (506)
.-..+++++...+.+.++.++++.|+|++.|+.... + ...+
T Consensus 93 ----------------------------------~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~-~----~~~~ 133 (435)
T PRK15493 93 ----------------------------------LESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPI-G----VDQD 133 (435)
T ss_pred ----------------------------------chhcCCHHHHHHHHHHHHHHHHhCCccEEEcccccc-c----cCHH
Confidence 001346788888999999999999999999986210 0 0111
Q ss_pred HHHHHHHHHHhcCCCeeEEEEccCc------cchhh-HHHHHHhcCCcC--CCcEEEceEEEeecCCcCcccccccCCcC
Q 010613 282 DFADVYQWASYSEKMKIRVCLFFPL------ETWSS-LADLINKTGHVL--SDWVYLGGVKAFADGSLGSNSALFHEPYA 352 (506)
Q Consensus 282 ~~~~~~~~l~~~g~l~~Rv~~~~~~------~~~~~-~~~~~~~~~~~~--~~~l~~~gvKl~~DG~~~~~ta~l~~pY~ 352 (506)
.+.+.+.+ .++|..+.... +.... +.+......++. .++ ++.. ...+.|
T Consensus 134 ---~~~~a~~~---~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~---------~~~~~~-- 191 (435)
T PRK15493 134 ---AIMETVSR---SGMRAAVSRTLFSFGTKEDEKKAIEEAEKYVKRYYNESGM-----LTTM---------VAPHSP-- 191 (435)
T ss_pred ---HHHHHHHH---cCCcEEEeeeecCCCCCccHHHHHHHHHHHHHHhcCCCCC-----eEEE---------EeCCCC--
Confidence 23344433 56887654221 11111 111111000110 111 1111 111223
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchH-HHHHHHHH----HHHHHhcCCCCCCceEeecccCChhHHH
Q 010613 353 DEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAA 427 (506)
Q Consensus 353 d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~a-v~~~l~a~----e~~~~~~g~~~~r~~i~H~~~i~~~~i~ 427 (506)
..+|++.++++++.|+++|+++++|+.+... ++.+.+.+ -+...+.|..+.|..++||+++++++++
T Consensus 192 --------~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~ 263 (435)
T PRK15493 192 --------YTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERA 263 (435)
T ss_pred --------CcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHHH
Confidence 3689999999999999999999999987653 22222222 1234567888999999999999999999
Q ss_pred HHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchh
Q 010613 428 RFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFS 496 (506)
Q Consensus 428 r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~ 496 (506)
+|++.|+.+++||.++. +++ .+.+|+++++++|++|++| |+.++ .++.++|.+|+
T Consensus 264 ~la~~g~~v~~~P~sn~--------~l~----~g~~p~~~~~~~Gv~v~lGtD~~~~--~~~~d~~~~~~ 319 (435)
T PRK15493 264 FLAEHDVRVAHNPNSNL--------KLG----SGIANVKAMLEAGIKVGIATDSVAS--NNNLDMFEEMR 319 (435)
T ss_pred HHHHcCCeEEEChHHHH--------HHh----cCcccHHHHHHCCCeEEEccCcccc--CCCcCHHHHHH
Confidence 99999999999998742 232 4789999999999999999 98654 24455555554
No 5
>PRK06687 chlorohydrolase; Validated
Probab=99.96 E-value=3e-27 Score=248.64 Aligned_cols=287 Identities=21% Similarity=0.279 Sum_probs=192.4
Q ss_pred EEEEcCEEEeCCCCC--ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~--~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
.+|+|+.|+|+++.. ..+++|+|+||+|++||+..+.. .....++||++|++|+|||||+|+|+.+...
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~--~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~------- 72 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAF--LEQAEQIIDYQGAWIMPGLVNCHTHSAMTGL------- 72 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCccccc--ccccCeEEeCCCCEEccceeeeccCCCcccc-------
Confidence 378999999998643 35679999999999999864432 1234689999999999999999999875432
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhC-CCCeEEEEecCCchhhhcHHHHHHcCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDIT-PHNPVWLSRMDGHMGLANSVALQLVGITN 203 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~-~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~ 203 (506)
+|. + ...+..+||+... |.
T Consensus 73 rg~--------------------------~-------~~~~~~~wl~~~~~~~--------------------------- 92 (419)
T PRK06687 73 RGI--------------------------R-------DDSNLHEWLNDYIWPA--------------------------- 92 (419)
T ss_pred ccc--------------------------c-------CCCCHHHHHHhhhccc---------------------------
Confidence 110 0 0112234444321 10
Q ss_pred CCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHH
Q 010613 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (506)
Q Consensus 204 ~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~ 283 (506)
-..+++++.....+.++.++++.|+|++.|+... .+ ...+
T Consensus 93 ---------------------------------~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~-~~----~~~~-- 132 (419)
T PRK06687 93 ---------------------------------ESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNP-NG----VDIQ-- 132 (419)
T ss_pred ---------------------------------cccCCHHHHHHHHHHHHHHHHhcCcceeehhhcc-cc----ccHH--
Confidence 0123567777888999999999999999998521 00 1122
Q ss_pred HHHHHHHHhcCCCeeEEEEccCcc---c--h-h---hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCC
Q 010613 284 ADVYQWASYSEKMKIRVCLFFPLE---T--W-S---SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADE 354 (506)
Q Consensus 284 ~~~~~~l~~~g~l~~Rv~~~~~~~---~--~-~---~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~ 354 (506)
++++.+.+. ++|..+.+.+. . . + ....+.++......+. +|+++ ..+.|
T Consensus 133 -~~~~a~~~~---Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----i~~~~---------~~~~~---- 190 (419)
T PRK06687 133 -QIYQVVKTS---KMRCYFSPTLFSSETETTAETISRTRSIIDEILKYKNPN-----FKVMV---------APHSP---- 190 (419)
T ss_pred -HHHHHHHHh---CCceEeccccccCCcccHHHHHHHHHHHHHHHhccCCCc-----eEEEE---------eCCCC----
Confidence 344555443 46766543211 1 0 1 1112221100001111 22221 11223
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHHHH----HHHhcCCCCCCceEeecccCChhHHHHH
Q 010613 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKS----VVVTTGKRDQRFRIEHAQHLASGTAARF 429 (506)
Q Consensus 355 ~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~e~----~~~~~g~~~~r~~i~H~~~i~~~~i~r~ 429 (506)
..++++.++++++.|+++|+++++|+.++. ..+.+++.+.+ ...+.|..+.+..++||++++++++++|
T Consensus 191 ------~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~l 264 (419)
T PRK06687 191 ------YSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERL 264 (419)
T ss_pred ------CCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHH
Confidence 368999999999999999999999999876 44555544322 3456788899999999999999999999
Q ss_pred HhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccc
Q 010613 430 GDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLF 482 (506)
Q Consensus 430 a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a 482 (506)
++.|+.+++||..+. .+ ..+++|+++++++|++|++| |+.+
T Consensus 265 a~~g~~v~~~P~sn~--------~l----~~g~~p~~~~~~~Gv~v~lGtD~~~ 306 (419)
T PRK06687 265 ASSQVAIAHNPISNL--------KL----ASGIAPIIQLQKAGVAVGIATDSVA 306 (419)
T ss_pred HHcCCeEEECcHHhh--------hh----ccCCCcHHHHHHCCCeEEEeCCCCC
Confidence 999999999998642 12 24789999999999999999 9865
No 6
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.95 E-value=1.1e-25 Score=237.91 Aligned_cols=306 Identities=16% Similarity=0.144 Sum_probs=194.9
Q ss_pred EEEEcCEEEeCCCCC--ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~--~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
++|+|++|+|+++.. ....+|.|+||+|.+||+..+.... .+..+++|++|++|+|||||+|+|+.+....
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~-~~~~~~id~~g~~v~PG~vd~H~H~~~~~~r------ 73 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQK-YPEATFIDAKGKLIMPGFINTHNHFYSTFAR------ 73 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhccc-CCCCeEEeCCCCEEecCeeecccchhhhhhc------
Confidence 378999999986543 3466999999999999986443221 1356899999999999999999998643211
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~ 204 (506)
+. +.+ .. ...+..+||...
T Consensus 74 -g~--------------------------~~d--~~-~~~~~~~~l~~~------------------------------- 92 (441)
T TIGR03314 74 -GM--------------------------MAD--IP-PPPDFISILKNL------------------------------- 92 (441)
T ss_pred -cc--------------------------ccc--CC-CCCCHHHHHHHH-------------------------------
Confidence 00 000 00 000111222110
Q ss_pred CCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHH
Q 010613 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (506)
Q Consensus 205 ~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~ 284 (506)
.+..-+.++++++..+.+.++.++++.|+|++.|+.. .++.. ....+
T Consensus 93 ----------------------------~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~-~~~~~-~~~~~--- 139 (441)
T TIGR03314 93 ----------------------------WWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHA-SPNAI-TGSLS--- 139 (441)
T ss_pred ----------------------------HHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEeccc-ccccc-cchHH---
Confidence 0111124577888888899999999999999999853 11111 01111
Q ss_pred HHHHHHHhcCCCeeEEEEccCccc------hh-hHH---HHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCC
Q 010613 285 DVYQWASYSEKMKIRVCLFFPLET------WS-SLA---DLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADE 354 (506)
Q Consensus 285 ~~~~~l~~~g~l~~Rv~~~~~~~~------~~-~~~---~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~ 354 (506)
.+.+.+. ++++|..+.....+ .. .+. ++.+......++++++ .+
T Consensus 140 ~~~~a~~---~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~----------------~~------- 193 (441)
T TIGR03314 140 TIRKAAD---EAGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYLVEA----------------HI------- 193 (441)
T ss_pred HHHHHHH---HhCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCceEE----------------EE-------
Confidence 2344444 35588765432111 11 111 1111100000111111 00
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHH----HHHHHhcCCCCCCceEeecccCChhHHHHH
Q 010613 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (506)
Q Consensus 355 ~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~----e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~ 429 (506)
..++...+|++.+++..+.|+++|+++++|+.+.. .++.+.+.+ -+...+.|..+++..++||.+++++|+++|
T Consensus 194 -~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~l 272 (441)
T TIGR03314 194 -GAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELL 272 (441)
T ss_pred -ecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHH
Confidence 11233468999999999999999999999998754 333333222 123456789999999999999999999999
Q ss_pred HhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhH
Q 010613 430 GDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYI 498 (506)
Q Consensus 430 a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~ 498 (506)
++.|+.+++||.++ + ++ ..+++|+++++++||+|+|| ||.+ .++|.+|+..
T Consensus 273 a~~g~~v~~cP~sn----~----~l----~~G~~p~~~~~~~Gv~v~LGtD~~~------~d~~~em~~a 324 (441)
T TIGR03314 273 NETDTFVVHNPESN----M----GN----AVGYNPVLRMFKNGILLGLGTDGYT------SDMFESLKFA 324 (441)
T ss_pred HHcCCcEEECHHHH----h----hh----ccCCCCHHHHHHCCCEEEEcCCCCC------cCHHHHHHHH
Confidence 99999999999874 2 23 24789999999999999999 9853 3667666654
No 7
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.95 E-value=2.3e-25 Score=234.86 Aligned_cols=300 Identities=20% Similarity=0.266 Sum_probs=194.6
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
++++|+|++|+++++......+|.|+||+|.+||+... .+..++||+.|++|+|||||+|+|+.....
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~-----~~~~~~id~~g~~v~PG~vd~H~H~~~~~~------- 69 (430)
T PRK06038 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTP-----GDADTVIDAKGSVVMPGLVNTHTHAAMTLF------- 69 (430)
T ss_pred CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCC-----CCCCEEEeCCCCEEecCeeecccCcchhhh-------
Confidence 46899999999987544456799999999999997522 134589999999999999999999864311
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~ 204 (506)
.+. + ...|...|++...
T Consensus 70 ~g~--------------------------~-------~~~~~~~~~~~~~------------------------------ 86 (430)
T PRK06038 70 RGY--------------------------A-------DDLPLAEWLNDHI------------------------------ 86 (430)
T ss_pred hhc--------------------------c-------CCCCHHHHHHhhh------------------------------
Confidence 000 0 0123333343210
Q ss_pred CCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHH
Q 010613 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (506)
Q Consensus 205 ~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~ 284 (506)
.......+.++.....+.++.++++.|+|++.|+.. ..+
T Consensus 87 -----------------------------~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~---------~~~--- 125 (430)
T PRK06038 87 -----------------------------WPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYF---------YMD--- 125 (430)
T ss_pred -----------------------------hhchhcCCHHHHHHHHHHHHHHHHhcCceeEEcccc---------CHH---
Confidence 000113466777777788899999999999999862 011
Q ss_pred HHHHHHHhcCCCeeEEEEccCc-c--chhhHHHHHHhcCCcCCCcEEEceEEEee---cCCcCcccccccCCcCCCCCCC
Q 010613 285 DVYQWASYSEKMKIRVCLFFPL-E--TWSSLADLINKTGHVLSDWVYLGGVKAFA---DGSLGSNSALFHEPYADEPHNY 358 (506)
Q Consensus 285 ~~~~~l~~~g~l~~Rv~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~gvKl~~---DG~~~~~ta~l~~pY~d~~~~~ 358 (506)
...++..+ .++|..+.... + ..+...+.++... ++ +|.+. +|.+. ....| +
T Consensus 126 ~~~~a~~~---~GiR~~~~~~~~d~~~~~~~~~~l~~~~----~~-----i~~~~~~~~g~v~----~~~~~-------~ 182 (430)
T PRK06038 126 EVAKAVEE---SGLRAALSYGMIDLGDDEKGEAELKEGK----RF-----VKEWHGAADGRIK----VMYGP-------H 182 (430)
T ss_pred HHHHHHHH---hCCeEEEEchhccCCCccchHHHHHHHH----HH-----HHHhcCCCCCceE----EEEeC-------C
Confidence 22333333 35786643321 1 0011111111000 00 01110 11100 00001 2
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHH-----HHHHHhcCCCCCCceEeecccCChhHHHHHHhCC
Q 010613 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY-----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (506)
Q Consensus 359 G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~-----e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lg 433 (506)
+...+++++++++++.|+++|+++++|+.++.+...++.+. .+...++|..+.|+.++||++++++++++|+++|
T Consensus 183 ~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g 262 (430)
T PRK06038 183 APYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERG 262 (430)
T ss_pred cCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcC
Confidence 23468999999999999999999999999987654433321 1123567888999999999999999999999999
Q ss_pred CEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 434 IVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 434 v~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
+.+++||.++.+ + ..+.+|+++++++||+|++| |++++ ..+.|||.+|+.
T Consensus 263 ~~v~~~P~~n~~--------~----~~~~~p~~~~~~~Gv~v~lGtD~~~~--~~~~d~~~~~~~ 313 (430)
T PRK06038 263 VNVSHNPVSNMK--------L----ASGIAPVPKLLERGVNVSLGTDGCAS--NNNLDMFEEMKT 313 (430)
T ss_pred CEEEEChHHhhh--------h----ccCCCCHHHHHHCCCeEEEeCCCCcc--CCCcCHHHHHHH
Confidence 999999986421 2 24678999999999999999 97643 345666666654
No 8
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.94 E-value=2.4e-25 Score=234.23 Aligned_cols=293 Identities=16% Similarity=0.171 Sum_probs=192.5
Q ss_pred ccEEEEcCEEEeCCCCC-ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~-~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~ 123 (506)
|+++|+|++|+++++.. ...++|+|+||+|++||+..+ ...++||++|++|+|||||+|+|+.+...
T Consensus 1 m~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~------~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~------ 68 (418)
T PRK06380 1 MSILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE------EADYIIDATGKVVMPGLINTHAHVGMTAS------ 68 (418)
T ss_pred CeEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC------CCCEEEECCCCEEccCEEeeccCCCcccc------
Confidence 45789999999986432 346799999999999997532 24589999999999999999999865422
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCC
Q 010613 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (506)
Q Consensus 124 l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~ 203 (506)
++. + ...+..+|+....+.
T Consensus 69 -rg~--------------------------~-------~~~~l~~~~~~~~~~--------------------------- 87 (418)
T PRK06380 69 -KGL--------------------------F-------DDVDLEEFLMKTFKY--------------------------- 87 (418)
T ss_pred -CCc--------------------------c-------cCCCHHHHHHHHHhh---------------------------
Confidence 110 0 012223444332110
Q ss_pred CCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHH
Q 010613 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (506)
Q Consensus 204 ~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~ 283 (506)
-...+++++....+.++.++++.|+|++.|+.. ..+
T Consensus 88 ---------------------------------~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~---------~~~-- 123 (418)
T PRK06380 88 ---------------------------------DSKRTREGIYNSAKLGMYEMINSGITAFVDLYY---------SED-- 123 (418)
T ss_pred ---------------------------------hhcCCHHHHHHHHHHHHHHHHhcCCeEEEcccc---------ChH--
Confidence 013477888888999999999999999999862 012
Q ss_pred HHHHHHHHhcCCCeeEEEEccCccc--h--------hhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCC
Q 010613 284 ADVYQWASYSEKMKIRVCLFFPLET--W--------SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYAD 353 (506)
Q Consensus 284 ~~~~~~l~~~g~l~~Rv~~~~~~~~--~--------~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d 353 (506)
.+.+.+. ++++|.++.....+ + +...++.+... .++.++. .+
T Consensus 124 -~~~~a~~---~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~-----~~----------------- 175 (418)
T PRK06380 124 -IIAKAAE---ELGIRAFLSWAVLDEEITTQKGDPLNNAENFIREHR--NEELVTP-----SI----------------- 175 (418)
T ss_pred -HHHHHHH---HhCCeEEEecccccCCcccccchHHHHHHHHHHHhc--CCCCeEE-----EE-----------------
Confidence 2233333 34578766432111 0 01111111100 0111111 00
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHH----HHHHHhcCCCCCCceEeecccCChhHHHH
Q 010613 354 EPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAAR 428 (506)
Q Consensus 354 ~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~----e~~~~~~g~~~~r~~i~H~~~i~~~~i~r 428 (506)
+.+|...+++++++++++.|+++|+++++|+.+.. .+......+ -+...+.|..+.|..++||++++++++++
T Consensus 176 --~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~ 253 (418)
T PRK06380 176 --GVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKL 253 (418)
T ss_pred --ECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHH
Confidence 11234567899999999999999999999998753 222222111 01234567778899999999999999999
Q ss_pred HHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 429 FGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 429 ~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
+++.|+.+++||.++. +++. .+.+|+++++++||+|++| |+.++ .++.++|.+|+.
T Consensus 254 la~~g~~v~~~P~sn~--------~l~~---~g~~p~~~~~~~Gv~v~lGTD~~~~--~~~~d~~~~~~~ 310 (418)
T PRK06380 254 LSKNGVKVSWNSVSNF--------KLGT---GGSPPIPEMLDNGINVTIGTDSNGS--NNSLDMFEAMKF 310 (418)
T ss_pred HHHcCCEEEECHHHHH--------hhcc---CCCCcHHHHHHCCCeEEEcCCCCcC--CCCcCHHHHHHH
Confidence 9999999999998742 2321 2678999999999999999 98643 234555555543
No 9
>PRK12393 amidohydrolase; Provisional
Probab=99.94 E-value=2.4e-25 Score=236.40 Aligned_cols=316 Identities=20% Similarity=0.231 Sum_probs=193.4
Q ss_pred cccEEEEcCE-EEeCCCCC--ceec-EEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccccc
Q 010613 44 EADLVVTNGV-IFTGDDSL--LFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQM 119 (506)
Q Consensus 44 ~~~~ii~n~~-I~t~~~~~--~~~~-av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~ 119 (506)
+.+++|+|+. |+|+++.. ..++ +|+|+||+|++||+.. . .+..++||+.|++|+|||||+|+|+.+...
T Consensus 1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~---~--~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~-- 73 (457)
T PRK12393 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGALT---P--LPGERVIDATDCVVYPGWVNTHHHLFQSLL-- 73 (457)
T ss_pred CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEeccC---C--CCCCeEEeCCCCEEecCEeecccCcccccc--
Confidence 3578999996 78876542 2344 8999999999999731 1 246799999999999999999999875421
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHc
Q 010613 120 ARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLV 199 (506)
Q Consensus 120 ~~~~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~ 199 (506)
.|.. . ....+...|+....
T Consensus 74 -----rg~~--------------------------~-----~~~~~~~~wl~~~~------------------------- 92 (457)
T PRK12393 74 -----KGVP--------------------------A-----GINQSLTAWLAAVP------------------------- 92 (457)
T ss_pred -----cccc--------------------------c-----ccCCchHHHhhhCc-------------------------
Confidence 1110 0 00112223332110
Q ss_pred CCCCCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCC-CCCcccC
Q 010613 200 GITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY-PGESVQL 278 (506)
Q Consensus 200 gi~~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~-~g~~~~~ 278 (506)
+.....+++++.....+.++.++++.|+|++.|+...+ ++.
T Consensus 93 ----------------------------------~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~---- 134 (457)
T PRK12393 93 ----------------------------------YRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGM---- 134 (457)
T ss_pred ----------------------------------chhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhccccc----
Confidence 00001347788889999999999999999999985211 111
Q ss_pred chHHHHHHHHHHHhcCCCeeEEEEccCcc--------------chhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCccc
Q 010613 279 SWEDFADVYQWASYSEKMKIRVCLFFPLE--------------TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNS 344 (506)
Q Consensus 279 ~~~~~~~~~~~l~~~g~l~~Rv~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~t 344 (506)
.......+.++.. ++++|+.+..... ..+...+.+...... ++-+.++..+...
T Consensus 135 ~~~~~~~~~~a~~---~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~ 202 (457)
T PRK12393 135 PFDTGDILFDEAE---ALGMRFVLCRGGATQTRGDHPGLPTALRPETLDQMLADVERL---------VSRYHDASPDSLR 202 (457)
T ss_pred ccchHHHHHHHHH---HcCCeEEEEccccccccccCCCCCCcccccCHHHHHHHHHHH---------HHHhcCCCcCCce
Confidence 1111112333343 4568876542110 001111111100000 0000010000000
Q ss_pred ccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHHH----HHHHhcCCCCCCceEeecc
Q 010613 345 ALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYK----SVVVTTGKRDQRFRIEHAQ 419 (506)
Q Consensus 345 a~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~e----~~~~~~g~~~~r~~i~H~~ 419 (506)
.....|.. ....++++.++++++.|+++|+++++|+.+.. .++.+++.+. +...+.|..+.|+.++||+
T Consensus 203 ~~~~~~~~------~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~ 276 (457)
T PRK12393 203 RVVVAPTT------PTFSLPPELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLV 276 (457)
T ss_pred EEEEcCCC------CCCCcCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEe
Confidence 00011110 11367899999999999999999999997532 2333333221 1224567778899999999
Q ss_pred cCChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 420 HLASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 420 ~i~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
+++++|+++++++|+.+++||..+ . ++| .+.+|+++++++|++|++| |+++++ ++.|||.+|..
T Consensus 277 ~l~~~d~~~la~~g~~v~~~P~sn----~----~lg----~g~~~~~~~~~~Gv~v~lGtD~~~~~--~~~d~~~~~~~ 341 (457)
T PRK12393 277 KLDAEEIALLAQTGTGIAHCPQSN----G----RLG----SGIAPALAMEAAGVPVSLGVDGAASN--ESADMLSEAHA 341 (457)
T ss_pred cCCHHHHHHHHHcCCeEEECchhh----h----hhc----ccCCCHHHHHHCCCeEEEecCCcccC--CCccHHHHHHH
Confidence 999999999999999999999763 2 233 3689999999999999999 987642 35666666543
No 10
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.94 E-value=5.1e-25 Score=233.87 Aligned_cols=306 Identities=17% Similarity=0.208 Sum_probs=193.2
Q ss_pred EEEEcCEEEeCCCCC--ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~--~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
+++.++.|+|+++.. ...++|+|+||+|.+||+..+.+. ++.++||+.|++|||||||+|+|+......
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~---~~~~vID~~g~~v~PGlVn~H~H~~~~~~~------ 74 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQ---PADEVFDARGHVVTPGLVNTHHHFYQTLTR------ 74 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCC---CCCeEEeCCCCEEecceEeccccccchhcc------
Confidence 455667899998653 467899999999999998754321 357899999999999999999998643210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~ 204 (506)
+.. . + ...+...|+....
T Consensus 75 -g~~-----------------~-------~-------~~~~~~~~~~~~~------------------------------ 92 (451)
T PRK08203 75 -ALP-----------------A-------A-------QDAELFPWLTTLY------------------------------ 92 (451)
T ss_pred -ccc-----------------c-------c-------CCCcHHHHHHHHh------------------------------
Confidence 000 0 0 0001112221110
Q ss_pred CCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHH
Q 010613 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (506)
Q Consensus 205 ~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~ 284 (506)
.....+++++.....+.++.++++.|+|++.|+...++... ...++
T Consensus 93 ------------------------------~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~-~~~~~--- 138 (451)
T PRK08203 93 ------------------------------PVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGL-RDALD--- 138 (451)
T ss_pred ------------------------------HHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccc-cchHH---
Confidence 00113477888888999999999999999999863112111 00111
Q ss_pred HHHHHHHhcCCCeeEEEEccCc----------cc---hhhHHH-------HHHhcCC-cCCCcEEEceEEEeecCCcCcc
Q 010613 285 DVYQWASYSEKMKIRVCLFFPL----------ET---WSSLAD-------LINKTGH-VLSDWVYLGGVKAFADGSLGSN 343 (506)
Q Consensus 285 ~~~~~l~~~g~l~~Rv~~~~~~----------~~---~~~~~~-------~~~~~~~-~~~~~l~~~gvKl~~DG~~~~~ 343 (506)
.+.+... +.++|+.+.... .. .+...+ +++.... ...+++ |+.+ .
T Consensus 139 ~~~~a~~---~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i-----~~~~----~-- 204 (451)
T PRK08203 139 DQIEAAR---EIGMRFHATRGSMSLGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAML-----RIAL----A-- 204 (451)
T ss_pred HHHHHHH---HcCCeEEEecceeecCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeE-----EEEE----e--
Confidence 2233333 345787653211 00 001111 1111000 001222 2110 0
Q ss_pred cccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHH----HHHHHhcCCCCCCceEeec
Q 010613 344 SALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----KSVVVTTGKRDQRFRIEHA 418 (506)
Q Consensus 344 ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~----e~~~~~~g~~~~r~~i~H~ 418 (506)
| ++...+++++++++++.|+++|+++++|+.+.. ....+++.+ -+...+.|..++|++++||
T Consensus 205 ------~-------~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~ 271 (451)
T PRK08203 205 ------P-------CSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHC 271 (451)
T ss_pred ------c-------CCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEE
Confidence 1 122357899999999999999999999986432 333333322 1123567888999999999
Q ss_pred ccCChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 419 QHLASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 419 ~~i~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
++++++++++|+++|+.+++||.... +++ .+.+|+++++++|++|++| |++.++ ...+||.+++.
T Consensus 272 ~~l~~~~~~~la~~g~~v~~~P~~~~--------~l~----~~~~~~~~~~~~Gv~v~lGtD~~~~~--~~~~~~~~~~~ 337 (451)
T PRK08203 272 VHLDDAEIARLARTGTGVAHCPCSNM--------RLA----SGIAPVRELRAAGVPVGLGVDGSASN--DGSNLIGEARQ 337 (451)
T ss_pred eCCCHHHHHHHHhcCCeEEECcHHhh--------hhc----cCCCCHHHHHHCCCeEEEecCCCccC--CCcCHHHHHHH
Confidence 99999999999999999999998642 232 4678999999999999999 987543 35566666654
Q ss_pred H
Q 010613 498 I 498 (506)
Q Consensus 498 ~ 498 (506)
.
T Consensus 338 ~ 338 (451)
T PRK08203 338 A 338 (451)
T ss_pred H
Confidence 3
No 11
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.94 E-value=1.1e-24 Score=230.82 Aligned_cols=312 Identities=16% Similarity=0.153 Sum_probs=192.3
Q ss_pred EEEEcCEEEeCCCCC--ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~--~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
++|+|++|+++++.. ....+|.|+||+|++||+..+.... .+..++||++|++|+|||||+|+|+.++...
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~-~~~~~viD~~g~lv~PGfID~H~H~~~~~~r------ 74 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAK-YPDAEFIDAKGKLIMPGLINSHNHIYSGLAR------ 74 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccc-cCCCeEEeCCCCEEecceeeccccchhhhhc------
Confidence 479999999976433 2467999999999999975443221 1356899999999999999999998643210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~ 204 (506)
+. +.+.. ...+..+|+...
T Consensus 75 -g~--------------------------~~~~~---~~~~l~~~l~~~------------------------------- 93 (442)
T PRK07203 75 -GM--------------------------MANIP---PPPDFISILKNL------------------------------- 93 (442)
T ss_pred -cc--------------------------ccccC---CCCCHHHHHHhh-------------------------------
Confidence 10 00000 000001111110
Q ss_pred CCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHH
Q 010613 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (506)
Q Consensus 205 ~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~ 284 (506)
.+...+.++++++....+.++.++++.|+|++.|+... +. ..+...+
T Consensus 94 ----------------------------~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~-~~-~~~~~~~--- 140 (442)
T PRK07203 94 ----------------------------WWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHAS-PN-YIGGSLF--- 140 (442)
T ss_pred ----------------------------eehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccc-cc-cccchHH---
Confidence 01111245778888888899999999999999998521 10 0011111
Q ss_pred HHHHHHHhcCCCeeEEEEccCccc---hhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCccc
Q 010613 285 DVYQWASYSEKMKIRVCLFFPLET---WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (506)
Q Consensus 285 ~~~~~l~~~g~l~~Rv~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~ 361 (506)
.+.+... +.++|..+.....+ .+...+..+........ .+-..++.+ .++. ..++..
T Consensus 141 ~~~~a~~---~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~~~~------~~~~~~~~v--------~~~~---~p~~~~ 200 (442)
T PRK07203 141 TIADAAK---KVGLRAMLCYETSDRDGEKELQEGVEENIRFIKH------IDEAKDDMV--------EAMF---GLHASF 200 (442)
T ss_pred HHHHHHH---HhCCeEEEecccccCCcchhHHHHHHHHHHHHHH------hcCCCCCce--------EEEE---ccCCCc
Confidence 2233333 45588765432211 11111111110000000 000000000 0110 123344
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHH----HHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEE
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDM----YKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a----~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~ 436 (506)
.++++.+++..+.|+++|+++++|..+.. ....+++. .-+...+.|..++|..+.||.++++++++++++.|+.+
T Consensus 201 ~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v 280 (442)
T PRK07203 201 TLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFV 280 (442)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeE
Confidence 67899999999999999999999998644 33333331 11334667888999999999999999999999999999
Q ss_pred EecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 437 SMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 437 s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
++||.++ + ++ .++.+|+++++++||+|++| |+.+ .++|.+|+.
T Consensus 281 ~~~P~sn----~----~l----~~g~~p~~~~~~~Gv~v~lGtD~~~------~d~~~~~~~ 324 (442)
T PRK07203 281 VHNPESN----M----GN----AVGYNPVLEMIKNGILLGLGTDGYT------SDMFESYKV 324 (442)
T ss_pred EECchhh----h----hc----ccCCCCHHHHHHCCCeEEEcCCCCC------ccHHHHHHH
Confidence 9999874 2 23 34789999999999999999 9753 255555544
No 12
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.94 E-value=1.3e-25 Score=237.71 Aligned_cols=301 Identities=19% Similarity=0.223 Sum_probs=195.2
Q ss_pred cccEEEEcCEEEeCCCCC--ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR 121 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~--~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~ 121 (506)
+.|++|+|+.|+|++++. ..+.+|+|+||+|++||+..+... ..++.++||+.|++|||||||+|+|+.....
T Consensus 6 ~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~-~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~---- 80 (443)
T PRK09045 6 PVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARA-RYAAAETVELPDHVLIPGLINAHTHAAMSLL---- 80 (443)
T ss_pred cccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccc-cCCcceEEeCCCCEEecCEeccccChhhHhh----
Confidence 468999999999987433 356799999999999998654322 1135789999999999999999999864311
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhh-CCCCeEEEEecCCchhhhcHHHHHHcC
Q 010613 122 VKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDI-TPHNPVWLSRMDGHMGLANSVALQLVG 200 (506)
Q Consensus 122 ~~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~-~~~~Pv~i~~~~~H~~~~Ns~aL~~~g 200 (506)
.+. + ...+...|+... .+.
T Consensus 81 ---~g~--------------------------~-------~~~~~~~w~~~~~~~~------------------------ 100 (443)
T PRK09045 81 ---RGL--------------------------A-------DDLPLMTWLQDHIWPA------------------------ 100 (443)
T ss_pred ---hhc--------------------------c-------CCCCHHHHHHhhhhhh------------------------
Confidence 000 0 011222333221 000
Q ss_pred CCCCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCch
Q 010613 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (506)
Q Consensus 201 i~~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~ 280 (506)
.....++++.....+..+.++++.|+|++.|+.. .
T Consensus 101 -----------------------------------~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~-~--------- 135 (443)
T PRK09045 101 -----------------------------------EGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYF-F--------- 135 (443)
T ss_pred -----------------------------------hhccCCHHHHHHHHHHHHHHHHhcCCcEEEeccc-c---------
Confidence 0012366777888888999999999999999752 1
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEccCc---c-ch-hhHHHHHH----hcCCc-CCCcEEEceEEEeecCCcCcccccccCC
Q 010613 281 EDFADVYQWASYSEKMKIRVCLFFPL---E-TW-SSLADLIN----KTGHV-LSDWVYLGGVKAFADGSLGSNSALFHEP 350 (506)
Q Consensus 281 ~~~~~~~~~l~~~g~l~~Rv~~~~~~---~-~~-~~~~~~~~----~~~~~-~~~~l~~~gvKl~~DG~~~~~ta~l~~p 350 (506)
.+ ...+...+.| +|+...... . .+ ....+.++ ...++ ..++ +|+.+ ....|
T Consensus 136 ~~--~~~~~~~~~G---~R~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----i~~~~---------~~~~~ 196 (443)
T PRK09045 136 PE--AAAEAAHQAG---MRAQIGMPVLDFPTAWASDADEYLAKGLELHDQWRHHPL-----ISTAF---------APHAP 196 (443)
T ss_pred HH--HHHHHHHHcC---CeEEEecccccCCCccccCHHHHHHHHHHHHHHhcCCCc-----EEEEE---------eCCCC
Confidence 11 1234444445 677654321 1 00 11122211 11111 1223 33221 01112
Q ss_pred cCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccc-hHHHHHHHHH----HHHHHhcCCCCCCceEeecccCChhH
Q 010613 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGT 425 (506)
Q Consensus 351 Y~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd-~av~~~l~a~----e~~~~~~g~~~~r~~i~H~~~i~~~~ 425 (506)
..++++.++++++.|+++|+++++|+.+. ..++.+++.+ -+...+.|..+.|+.++||+++++++
T Consensus 197 ----------~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~ 266 (443)
T PRK09045 197 ----------YTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAE 266 (443)
T ss_pred ----------CCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHH
Confidence 35789999999999999999999999743 2333344321 11235678889999999999999999
Q ss_pred HHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 426 AARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 426 i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
+++++++|+.+++||..+. .+ ..+..|+++++++|++|++| |++.+ ..+.|+|.+++.
T Consensus 267 ~~~la~~g~~i~~~P~~~~--------~~----~~~~~~~~~l~~~Gv~v~lGtD~~~~--~~~~~~~~~~~~ 325 (443)
T PRK09045 267 IALLAETGCSVVHCPESNL--------KL----ASGFCPVAKLLQAGVNVALGTDGAAS--NNDLDLFGEMRT 325 (443)
T ss_pred HHHHHHcCCeEEECHHHHh--------hh----ccCCCcHHHHHHCCCeEEEecCCCCC--CCCccHHHHHHH
Confidence 9999999999999997632 12 23678999999999999999 98753 234566665554
No 13
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.94 E-value=6.6e-25 Score=232.70 Aligned_cols=306 Identities=18% Similarity=0.241 Sum_probs=192.8
Q ss_pred ccEEEEcCEEEeCCCCC-ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~-~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~ 123 (506)
|+++|+|+.|+|+++.. ...++|+|+||+|.+||+..+.. +..++||++|++|||||||+|+|+.....
T Consensus 1 ~~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~----~~~~vID~~G~~vlPGlId~H~H~~~~~~------ 70 (445)
T PRK07228 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLE----DYDDHIDATGKVVIPGLIQGHIHLCQTLF------ 70 (445)
T ss_pred CeEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccC----cCCeEEeCCCCEEecCEEecccCCccccc------
Confidence 56899999999987542 46789999999999999754321 25789999999999999999999864210
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCC
Q 010613 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (506)
Q Consensus 124 l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~ 203 (506)
.+. + ...+...|+.+.
T Consensus 71 -~g~--------------------------~-------~~~~~~~~~~~~------------------------------ 86 (445)
T PRK07228 71 -RGI--------------------------A-------DDLELLDWLKDR------------------------------ 86 (445)
T ss_pred -eec--------------------------c-------CCCCHHHHHHhh------------------------------
Confidence 000 0 001111222110
Q ss_pred CCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHH
Q 010613 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (506)
Q Consensus 204 ~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~ 283 (506)
+......+++++.....+.++.++++.|+||+.|+.... ..+
T Consensus 87 -----------------------------~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~-------~~~-- 128 (445)
T PRK07228 87 -----------------------------IWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVH-------HTD-- 128 (445)
T ss_pred -----------------------------hhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEcccccc-------ChH--
Confidence 000011346777888888999999999999999986210 011
Q ss_pred HHHHHHHHhcCCCeeEEEEccCccc---------hhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCC
Q 010613 284 ADVYQWASYSEKMKIRVCLFFPLET---------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADE 354 (506)
Q Consensus 284 ~~~~~~l~~~g~l~~Rv~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~ 354 (506)
..++.+.+.| +|.......-+ .+...+.+++.. ++ +|.+ +|...+.... .+
T Consensus 129 -~~~~a~~~~g---~r~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~----~~-----i~~~-~g~~~~~~~~---~~--- 188 (445)
T PRK07228 129 -SAFEAAGESG---IRAVLGKVMMDYGDDVPEGLQEDTEASLAESV----RL-----LEKW-HGADNGRIRY---AF--- 188 (445)
T ss_pred -HHHHHHHHcC---CeEEEecceecCCcCCCccccccHHHHHHHHH----HH-----HHHh-cCCCCCceEE---EE---
Confidence 3455555545 57544211100 011111111100 00 1111 1111000000 01
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHH-HHH----HHHHhcCCCCCCceEeecccCChhHHHHH
Q 010613 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD-MYK----SVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (506)
Q Consensus 355 ~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~-a~e----~~~~~~g~~~~r~~i~H~~~i~~~~i~r~ 429 (506)
..+....++++.++++++.|+++|+++++|+.++......+. ... +...+.|..+.|+.++||+++++++++++
T Consensus 189 -~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~ 267 (445)
T PRK07228 189 -TPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLDEEEREIL 267 (445)
T ss_pred -eCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHH
Confidence 011234678999999999999999999999998764322221 110 12344677788999999999999999999
Q ss_pred HhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 430 GDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 430 a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
+++|+.+++||..++ .+ ..+..|+++++++|+++++| |++.++ .+.+||.+++.
T Consensus 268 ~~~g~~v~~~P~~~~--------~~----~~~~~p~~~~~~~Gv~v~lGtD~~~~~--~~~~~~~~~~~ 322 (445)
T PRK07228 268 AETGTHVTHCPSSNL--------KL----ASGIAPVPDLLERGINVALGADGAPCN--NTLDPFTEMRQ 322 (445)
T ss_pred HHcCCeEEEChHHhh--------hc----ccccCcHHHHHHCCCeEEEcCCCCccC--CCccHHHHHHH
Confidence 999999999998642 12 24678999999999999999 986542 23456666544
No 14
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.94 E-value=7.7e-25 Score=229.50 Aligned_cols=302 Identities=20% Similarity=0.234 Sum_probs=191.3
Q ss_pred EEEEcCEEEeCCCCC-ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccCC
Q 010613 47 LVVTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~-~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l~ 125 (506)
++|+|++|+++++.. ....+|+|+||||.+||+..+.+. .+..++||++|++|+|||||+|+|+......
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~--~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~------- 71 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPA--YPADEVIDAKGKVVMPGLVNTHTHLAMTLLR------- 71 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCcccccc--CCcCeEEeCCCCEEccCccccccchhhHHhh-------
Confidence 478999999986433 356799999999999997643211 1357899999999999999999998632110
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCCC
Q 010613 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (506)
Q Consensus 126 ~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~~ 205 (506)
+. + ...+..++|.....
T Consensus 72 ~~--------------------------~-------~~~~~~~~l~~~~~------------------------------ 88 (411)
T cd01298 72 GL--------------------------A-------DDLPLMEWLKDLIW------------------------------ 88 (411)
T ss_pred cc--------------------------c-------CCCCHHHHHHhhhh------------------------------
Confidence 00 0 00011111211100
Q ss_pred CCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHH
Q 010613 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFAD 285 (506)
Q Consensus 206 ~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~ 285 (506)
..-...+.+++....+.++.++++.|+|++.|+... + .+ .
T Consensus 89 -----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-~-------~~---~ 128 (411)
T cd01298 89 -----------------------------PLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFF-Y-------PD---A 128 (411)
T ss_pred -----------------------------hhhhcCCHHHHHHHHHHHHHHHHhcCccEEECcccc-c-------hH---H
Confidence 000123567778888889999999999999998631 0 01 2
Q ss_pred HHHHHHhcCCCeeEEEEccCccc--------hh-hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCC
Q 010613 286 VYQWASYSEKMKIRVCLFFPLET--------WS-SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPH 356 (506)
Q Consensus 286 ~~~~l~~~g~l~~Rv~~~~~~~~--------~~-~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~ 356 (506)
..+.+.+ .++|+........ .. ..++......+.... ..+.+|+++... .|
T Consensus 129 ~~~~~~~---~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~~~~~~---------~~------ 188 (411)
T cd01298 129 VAEAAEE---LGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGA--ADGRIRVALAPH---------AP------ 188 (411)
T ss_pred HHHHHHH---hCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCC--CCCceEEEEeCC---------CC------
Confidence 2333333 3467654322111 01 111111110000000 123456554311 12
Q ss_pred CCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHHHH----HHHhcCCCCCCceEeecccCChhHHHHHHh
Q 010613 357 NYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKS----VVVTTGKRDQRFRIEHAQHLASGTAARFGD 431 (506)
Q Consensus 357 ~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~e~----~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~ 431 (506)
..+++++++++++.|+++|+++++|+.++. +.+.+++.+.. ...+.+..+.|++++|++++++++++++++
T Consensus 189 ----~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~ 264 (411)
T cd01298 189 ----YTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAE 264 (411)
T ss_pred ----ccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHH
Confidence 246899999999999999999999998775 44444433211 123456667899999999999999999999
Q ss_pred CCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhH
Q 010613 432 QGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYI 498 (506)
Q Consensus 432 lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~ 498 (506)
.|+.+++||.+.+ .++ .+.+|+++++++|+++++| |++.++ .+.++|.+++..
T Consensus 265 ~gi~~~~~p~~~~--------~~~----~~~~~~~~~~~~Gv~~~~GsD~~~~~--~~~~~~~~~~~~ 318 (411)
T cd01298 265 TGTGVAHNPASNM--------KLA----SGIAPVPEMLEAGVNVGLGTDGAASN--NNLDMFEEMRLA 318 (411)
T ss_pred cCCeEEEChHHhh--------hhh----hCCCCHHHHHHCCCcEEEeCCCCccC--CCcCHHHHHHHH
Confidence 9999999998642 122 2468999999999999999 987532 345666665543
No 15
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.93 E-value=1e-24 Score=233.42 Aligned_cols=307 Identities=17% Similarity=0.194 Sum_probs=191.2
Q ss_pred cEEEEcCEEEeCCCCC---ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccc
Q 010613 46 DLVVTNGVIFTGDDSL---LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (506)
Q Consensus 46 ~~ii~n~~I~t~~~~~---~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~ 122 (506)
.++|+|+.|+|.++.. ...++|+|+||+|++||+... .+..++||+.|++|||||||+|+|+.+.....
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~-----~~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~--- 73 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFD-----GEVDRVIDAGNALVGPGFIDLDALSDLDTTIL--- 73 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEecCEEeeecccchhhhhc---
Confidence 5789999999877532 356799999999999997532 12468999999999999999999985321100
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCC
Q 010613 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (506)
Q Consensus 123 ~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~ 202 (506)
+. .. ...|+.+ ..++.. + +
T Consensus 74 ---~~--------------~~--~~~~~~~-------------------~~~~~~------------~-----~------ 92 (488)
T PRK06151 74 ---GL--------------DN--GPGWAKG-------------------RVWSRD------------Y-----V------ 92 (488)
T ss_pred ---cc--------------cc--chhHHhc-------------------ccCchh------------h-----h------
Confidence 00 00 0011100 000000 0 0
Q ss_pred CCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHH
Q 010613 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (506)
Q Consensus 203 ~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~ 282 (506)
+. .....+++++.....+.++.++++.|+|++.|+...+.. .....+..
T Consensus 93 ------------------------~~------~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~-~~~~~~~~ 141 (488)
T PRK06151 93 ------------------------EA------GRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYR-QWAETYAE 141 (488)
T ss_pred ------------------------hc------chhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhcc-ccccccch
Confidence 00 000145788888889999999999999999997531110 00011111
Q ss_pred HHHHHHHHHhcCCCeeEEEEccCccc--------------------hhhHH---HHHHhcCCcCCCcEEEceEEEeecCC
Q 010613 283 FADVYQWASYSEKMKIRVCLFFPLET--------------------WSSLA---DLINKTGHVLSDWVYLGGVKAFADGS 339 (506)
Q Consensus 283 ~~~~~~~l~~~g~l~~Rv~~~~~~~~--------------------~~~~~---~~~~~~~~~~~~~l~~~gvKl~~DG~ 339 (506)
..++.+... ++.+|+.+...... .+.+. ++.+.......++ +|...
T Consensus 142 ~~~~~~a~~---~~GiR~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-----i~~~~--- 210 (488)
T PRK06151 142 FAAAAEAAG---RLGLRVYLGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGL-----VRGML--- 210 (488)
T ss_pred HHHHHHHHH---HcCCeEEecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCc-----eEEEE---
Confidence 212333333 34577765431100 00011 1111111111122 33110
Q ss_pred cCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeec-cchHHHHHHHHHH----HHHHhcCCCCCCce
Q 010613 340 LGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYK----SVVVTTGKRDQRFR 414 (506)
Q Consensus 340 ~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~-Gd~av~~~l~a~e----~~~~~~g~~~~r~~ 414 (506)
. | .....+++++++++++.|+++|+++++|+. |+.+++.+.+.+. +...+.|..+.|++
T Consensus 211 -~--------p-------~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~ 274 (488)
T PRK06151 211 -A--------P-------DRIETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLL 274 (488)
T ss_pred -c--------C-------CCCCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcE
Confidence 0 1 122358999999999999999999999996 6666655554332 23456788889999
Q ss_pred EeecccCCh---------hHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccc
Q 010613 415 IEHAQHLAS---------GTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCY 484 (506)
Q Consensus 415 i~H~~~i~~---------~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~ 484 (506)
++||+++++ +++++|+++|+.+++||... . ++| .+.+|+++++++|++|++| |+.
T Consensus 275 l~H~~~l~~~~~~~~~~~~~~~~la~~g~~v~~~P~~~----~----~~g----~~~~p~~~l~~~Gv~v~lGtD~~--- 339 (488)
T PRK06151 275 IPHATYISGSPRLNYSGGDDLALLAEHGVSIVHCPLVS----A----RHG----SALNSFDRYREAGINLALGTDTF--- 339 (488)
T ss_pred EEEEEEcCCccccccCCHHHHHHHHhcCCEEEECchhh----h----hhc----cccccHHHHHHCCCcEEEECCCC---
Confidence 999999999 99999999999999999753 1 233 3678999999999999999 963
Q ss_pred cccCCCCCcchhh
Q 010613 485 MLVTCRPRNNFSY 497 (506)
Q Consensus 485 ~~~~~~~~~~~~~ 497 (506)
+.+||.+++.
T Consensus 340 ---~~~~~~~~~~ 349 (488)
T PRK06151 340 ---PPDMVMNMRV 349 (488)
T ss_pred ---CccHHHHHHH
Confidence 2366655544
No 16
>PRK08204 hypothetical protein; Provisional
Probab=99.93 E-value=3.9e-24 Score=227.08 Aligned_cols=301 Identities=17% Similarity=0.147 Sum_probs=187.8
Q ss_pred ccEEEEcCEEEeCCCC--CceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~--~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~ 122 (506)
..++|+|++|+++++. .....+|+|+||+|++||+..+. +..++||++|++|+|||||+|+|+......
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~-----~~~~viD~~g~~v~PGlId~H~H~~~~~~~---- 72 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEA-----PDAEVVDARGMIVMPGLVDTHRHTWQSVLR---- 72 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCC-----CCCeEEeCCCCEEecCEEeeeeccchhhhc----
Confidence 4578999999997753 34577999999999999986331 256899999999999999999998543210
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCC
Q 010613 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (506)
Q Consensus 123 ~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~ 202 (506)
+.. ++.+..+++....
T Consensus 73 ---~~~---------------------------------~~~~~~~~~~~~~---------------------------- 88 (449)
T PRK08204 73 ---GIG---------------------------------ADWTLQTYFREIH---------------------------- 88 (449)
T ss_pred ---ccc---------------------------------CCCcHHHHHHhhc----------------------------
Confidence 000 0011111221110
Q ss_pred CCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHH
Q 010613 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (506)
Q Consensus 203 ~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~ 282 (506)
...-+..++++.....+.++.++++.|+|++.|++... . . ...
T Consensus 89 -------------------------------~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~-~-~----~~~ 131 (449)
T PRK08204 89 -------------------------------GNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHIN-N-S----PEH 131 (449)
T ss_pred -------------------------------ccccccCCHHHHHHHHHHHHHHHHhcCCeEEeeccccc-C-C----hhH
Confidence 00012345666677777888899999999999976311 0 0 011
Q ss_pred HHHHHHHHHhcCCCeeEEEEccCccc-------------hhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccC
Q 010613 283 FADVYQWASYSEKMKIRVCLFFPLET-------------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHE 349 (506)
Q Consensus 283 ~~~~~~~l~~~g~l~~Rv~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~ 349 (506)
....++.+.+.| +|..+...... .+....+.++.....+..++. . ..
T Consensus 132 ~~~~~~~~~~~G---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~--- 191 (449)
T PRK08204 132 ADAAIRGLAEAG---IRAVFAHGSPGPSPYWPFDSVPHPREDIRRVKKRYFSSDDGLLTL-----G---------LA--- 191 (449)
T ss_pred HHHHHHHHHHcC---CeEEEEccccCCCCCCCcchhhhhHHHHHHHHHhhccCCCCceEE-----E---------Ee---
Confidence 113445554444 56554221100 011111111100000111110 0 00
Q ss_pred CcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHH
Q 010613 350 PYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (506)
Q Consensus 350 pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~ 429 (506)
..+..++++|.+++.++.|+++|+++++|+.++... ...+.++.+ .+.|..+.|+.++||++++++++++|
T Consensus 192 -------~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~-~~~~~~~~l-~~~g~~~~~~~i~H~~~~~~~~~~~l 262 (449)
T PRK08204 192 -------IRGPEFSSWEVARADFRLARELGLPISMHQGFGPWG-ATPRGVEQL-HDAGLLGPDLNLVHGNDLSDDELKLL 262 (449)
T ss_pred -------cCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcc-cCCCHHHHH-HHCCCCCCCeEEEecCCCCHHHHHHH
Confidence 012234688999999999999999999999765321 111222222 33577788999999999999999999
Q ss_pred HhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHH
Q 010613 430 GDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIF 499 (506)
Q Consensus 430 a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~ 499 (506)
++.|+.+++||.+..+ +| .+.+|+++++++||+|++| |+++ .++.|||.+|+...
T Consensus 263 a~~g~~v~~~P~~~~~--------~g----~~~~~~~~~~~~Gv~v~lGtD~~~---~~~~~~~~~~~~a~ 318 (449)
T PRK08204 263 ADSGGSFSVTPEIEMM--------MG----HGYPVTGRLLAHGVRPSLGVDVVT---STGGDMFTQMRFAL 318 (449)
T ss_pred HHcCCCEEEChHHHhh--------hc----CCCCcHHHHHhcCCceeeccccCC---CCCcCHHHHHHHHH
Confidence 9999999999976421 22 3678999999999999999 9753 34567776665543
No 17
>PRK08418 chlorohydrolase; Provisional
Probab=99.93 E-value=9.2e-24 Score=220.90 Aligned_cols=296 Identities=15% Similarity=0.216 Sum_probs=183.9
Q ss_pred EEEEcCEEEeCCCC--CceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 47 LVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 47 ~ii~n~~I~t~~~~--~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
++|+|+.|+|+++. ...+.+|+|+ |+|++||+..+.... .+..++||++|++|+|||||+|+|+.+...
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~-~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~------- 72 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKK-YPNAKIQFFKNSVLLPAFINPHTHLEFSAN------- 72 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhh-CCCCcEEecCCcEEccCccccccchhhhhh-------
Confidence 47889999998743 2356789999 999999986544321 134568999999999999999999864321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~ 204 (506)
++. . ...+...||..+...
T Consensus 73 rg~-------------~--------------------~~~~~~~wl~~~~~~---------------------------- 91 (408)
T PRK08418 73 KTT-------------L--------------------DYGDFIPWLGSVINH---------------------------- 91 (408)
T ss_pred ccc-------------c--------------------CCCchHHHHHHHhhh----------------------------
Confidence 000 0 001112333221100
Q ss_pred CCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHH
Q 010613 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (506)
Q Consensus 205 ~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~ 284 (506)
. ...+.+......+.++.++++.|+|++.|+... ..
T Consensus 92 -----------------------------~---~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~----------~~-- 127 (408)
T PRK08418 92 -----------------------------R---EDLLEKCKGALIQQAINEMLKSGVGTIGAISSF----------GI-- 127 (408)
T ss_pred -----------------------------h---hhcCHHHHHHHHHHHHHHHHhcCceEEEEeecc----------hh--
Confidence 0 012445556778889999999999999998621 11
Q ss_pred HHHHHHHhcCCCeeEEEEccCccc-----h-hhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCC
Q 010613 285 DVYQWASYSEKMKIRVCLFFPLET-----W-SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (506)
Q Consensus 285 ~~~~~l~~~g~l~~Rv~~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~ 358 (506)
..+.+. +.++|+.++..... . ....++....... +-+.++.+.. .-+.+
T Consensus 128 -~~~a~~---~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~aph---------- 182 (408)
T PRK08418 128 -DLEICA---KSPLRVVFFNEILGSNASAVDELYQDFLARFEES----------KKFKSKKFIP-AIAIH---------- 182 (408)
T ss_pred -hHHHHH---hcCCeEEEEeeeeCCCccchhhhHHHHHHHHHhh----------hcccCCceeE-EEeCC----------
Confidence 122333 45688765422110 0 1111111110000 0001111100 00112
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEeeccchH-HHHHHHHHH--------------------HHHHhcCCCCCCceEee
Q 010613 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYK--------------------SVVVTTGKRDQRFRIEH 417 (506)
Q Consensus 359 G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~a-v~~~l~a~e--------------------~~~~~~g~~~~r~~i~H 417 (506)
+...+|++.++++.+.|+++|+++++|+.+.+. ++.+.+... +.....+ +.+..++|
T Consensus 183 ~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g--~~~~~~~H 260 (408)
T PRK08418 183 SPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFK--GLRTLFTH 260 (408)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhC--CCCeEEEe
Confidence 334689999999999999999999999987542 222221100 0112222 46899999
Q ss_pred cccCChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchh
Q 010613 418 AQHLASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFS 496 (506)
Q Consensus 418 ~~~i~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~ 496 (506)
|.+++++|++++++.|+.+++||.++. ++| .+.+|+++++++|++|+|| |+.++| ++.++|.+|+
T Consensus 261 ~~~~~~~di~~la~~g~~v~~cP~sn~--------~lg----~g~~p~~~~~~~Gi~v~lGtD~~~~~--~~~~~~~em~ 326 (408)
T PRK08418 261 CVYASEEELEKIKSKNASITHCPFSNR--------LLS----NKALDLEKAKKAGINYSIATDGLSSN--ISLSLLDELR 326 (408)
T ss_pred cccCCHHHHHHHHHcCCcEEECHhHHH--------Hhc----CCCccHHHHHhCCCeEEEeCCCCCCC--CCcCHHHHHH
Confidence 999999999999999999999998742 233 3679999999999999999 987643 4556666665
Q ss_pred h
Q 010613 497 Y 497 (506)
Q Consensus 497 ~ 497 (506)
.
T Consensus 327 ~ 327 (408)
T PRK08418 327 A 327 (408)
T ss_pred H
Confidence 4
No 18
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.92 E-value=5.1e-24 Score=224.33 Aligned_cols=303 Identities=16% Similarity=0.188 Sum_probs=191.8
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
++++|+|++|+++++......+|.|+||+|++|++... .+..++||+.|++|+|||||+|+|+.....
T Consensus 1 ~~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~-----~~~~~~id~~~~~v~Pg~vd~H~H~~~~~~------- 68 (424)
T PRK08393 1 MSILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNIN-----KPADTVIDASGSVVSPGFINAHTHSPMVLL------- 68 (424)
T ss_pred CeEEEECcEEEeCCCCceecceEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEccCeeeeccCcchHhh-------
Confidence 46899999999987544456789999999999987432 134579999999999999999999864311
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~ 204 (506)
.+. + +..+..+||+....
T Consensus 69 rg~--------------------------~-------~~~~l~~~l~~~~~----------------------------- 86 (424)
T PRK08393 69 RGL--------------------------A-------DDVPLMEWLQNYIW----------------------------- 86 (424)
T ss_pred hhc--------------------------c-------CCCCHHHHHHhhhc-----------------------------
Confidence 000 0 01222333432110
Q ss_pred CCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHH
Q 010613 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (506)
Q Consensus 205 ~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~ 284 (506)
......++++++...+.++.++++.|+|++.|+.. ..+
T Consensus 87 ------------------------------~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~---------~~~--- 124 (424)
T PRK08393 87 ------------------------------PRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYF---------HME--- 124 (424)
T ss_pred ------------------------------cccccCCHHHHHHHHHHHHHHHHhcCceEEecccc---------CHH---
Confidence 00013467788888999999999999999999862 112
Q ss_pred HHHHHHHhcCCCeeEEEEccCc---cchhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCccc
Q 010613 285 DVYQWASYSEKMKIRVCLFFPL---ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (506)
Q Consensus 285 ~~~~~l~~~g~l~~Rv~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~ 361 (506)
+..+.+.+ .++|....... .......+.+....+.. ++ +|-..++.+. ..... +...
T Consensus 125 ~~~~a~~~---~G~r~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-----~~~~~~~~v~-~~~~p----------~~~~ 184 (424)
T PRK08393 125 EVAKATLE---VGLRGYLSYGMVDLGDEEKREKEIKETEKLM-EF-----IEKLNSPRVH-FVFGP----------HAPY 184 (424)
T ss_pred HHHHHHHH---hCCeEEEeceEecCCCccchHHHHHHHHHHH-HH-----HhcCCCCceE-EEEeC----------CcCC
Confidence 23333333 34676543211 11111111111000000 00 1101111100 00011 1223
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHH----HHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEE
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~----e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~ 436 (506)
.++++.++++++.|+++|+++++|+.+.. .+..+.+.+ .+...+.|..+.|..++||++++++++++|++.|+.+
T Consensus 185 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v 264 (424)
T PRK08393 185 TCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTV 264 (424)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEE
Confidence 57899999999999999999999997533 333333221 1223556888899999999999999999999999999
Q ss_pred EecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 437 SMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 437 s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
++||..+. .++ .+.+|+++++++|++|++| |++.+ ..+.+++.+|+.
T Consensus 265 ~~~P~sn~--------~lg----~g~~~~~~~~~~Gv~v~lGtD~~~~--~~~~d~~~~~~~ 312 (424)
T PRK08393 265 AHNPASNM--------KLG----SGVMPLRKLLNAGVNVALGTDGAAS--NNNLDMLREMKL 312 (424)
T ss_pred EECHHHHH--------hhc----cCCCCHHHHHHCCCcEEEecCCCcc--CCchhHHHHHHH
Confidence 99997632 232 3678999999999999999 98753 234566666654
No 19
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.92 E-value=9.6e-25 Score=230.05 Aligned_cols=299 Identities=16% Similarity=0.209 Sum_probs=183.0
Q ss_pred eCCCCC--ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccCCCCCCHHHH
Q 010613 56 TGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEF 133 (506)
Q Consensus 56 t~~~~~--~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l~~~~s~~~~ 133 (506)
|+|... ..+++|+|+||+|++||+..++..-..+..++||++|++|||||||+|+|+.+... .|.
T Consensus 16 ~~d~~~~~~~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~-------rg~------ 82 (429)
T cd01303 16 LVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYAN-------IGS------ 82 (429)
T ss_pred ccCCcEEEECCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeeccccccc-------ccc------
Confidence 455432 35679999999999999865542111245789999999999999999999854321 110
Q ss_pred HHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhh-CCCCeEEEEecCCchhhhcHHHHHHcCCCCCCCCCCCCe
Q 010613 134 VRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDI-TPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGT 212 (506)
Q Consensus 134 ~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~-~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~~~~p~gg~ 212 (506)
+. ..+..+|+.+. .|. +
T Consensus 83 --------------------~~-------~~~l~~wl~~~~~~~--------------------e--------------- 100 (429)
T cd01303 83 --------------------GL-------GEPLLDWLETYTFPE--------------------E--------------- 100 (429)
T ss_pred --------------------cC-------CCcHHHHHHhhhhHH--------------------H---------------
Confidence 00 11222233210 000 0
Q ss_pred eeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHh
Q 010613 213 IMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASY 292 (506)
Q Consensus 213 i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~ 292 (506)
.. ..+.++.....+.++.++++.|+|++.|+....+ ..++ ...+++.+
T Consensus 101 ----------------------~~--~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~-----~~~~---~~~~a~~~ 148 (429)
T cd01303 101 ----------------------AK--FADPAYAREVYGRFLDELLRNGTTTACYFATIHP-----ESTE---ALFEEAAK 148 (429)
T ss_pred ----------------------Hh--cCCHHHHHHHHHHHHHHHHhCCceEEEeecccCh-----hHHH---HHHHHHHH
Confidence 00 1245666677888999999999999999752110 1112 33444433
Q ss_pred cCCCeeEEEEccCcc----c---hhhHHHHHHhcCCcCCCcEEEceEEEee--cCCcCcccccccCCcCCCCCCCcccCC
Q 010613 293 SEKMKIRVCLFFPLE----T---WSSLADLINKTGHVLSDWVYLGGVKAFA--DGSLGSNSALFHEPYADEPHNYGLQVM 363 (506)
Q Consensus 293 ~g~l~~Rv~~~~~~~----~---~~~~~~~~~~~~~~~~~~l~~~gvKl~~--DG~~~~~ta~l~~pY~d~~~~~G~~~~ 363 (506)
.++|+.+..... . .....+....... + +|.+. +|.+. .++ .| ++...+
T Consensus 149 ---~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----i~~~~~~~~~v~---~~~-~p-------~~~~~~ 205 (429)
T cd01303 149 ---RGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKR----L-----IERWHGKSGRVK---PAI-TP-------RFAPSC 205 (429)
T ss_pred ---hCCeEEEeeeeecCCCCcccccCHHHHHHHHHH----H-----HHHHhCcCCceE---EEE-ec-------CcCCcC
Confidence 447876532110 0 0111111110000 0 00010 01110 000 01 122357
Q ss_pred CHHHHHHHHHHHHHCC-CeEEEeeccch-HHHHHHHHHH------HHHHhcCCCCCCceEeecccCChhHHHHHHhCCCE
Q 010613 364 ELESLLSMTMASDKSG-LQVAIHAIGDR-ANDLVLDMYK------SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g-~~v~iHa~Gd~-av~~~l~a~e------~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~ 435 (506)
+++.++++++.|+++| +++++|+.+.. .++.+.+.+. +...+.|..+.|..++||++++++++++|++.|+.
T Consensus 206 s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~ 285 (429)
T cd01303 206 SEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGAS 285 (429)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCE
Confidence 8999999999999999 99999997644 3333333211 33456788889999999999999999999999999
Q ss_pred EEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHH
Q 010613 436 ASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIF 499 (506)
Q Consensus 436 ~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~ 499 (506)
+++||.++. +++ .+.+|+++++++|++|++| |++++ ++.+||.+|+...
T Consensus 286 v~~~P~sn~--------~l~----~g~~~~~~~~~~Gv~v~lGtD~~~~---~~~d~~~~~~~~~ 335 (429)
T cd01303 286 VAHCPTSNL--------FLG----SGLFDVRKLLDAGIKVGLGTDVGGG---TSFSMLDTLRQAY 335 (429)
T ss_pred EEECccchh--------hhc----cCCCCHHHHHHCCCeEEEeccCCCC---CCccHHHHHHHHH
Confidence 999998742 232 4788999999999999999 98753 3456666665443
No 20
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.92 E-value=7.1e-24 Score=221.85 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=96.8
Q ss_pred cCCCHHHHHHHHHHHHHC-CCeEEEeeccc-hHHHHHHHHH------HHHHHhcCCCCCCceEeecccCChhHHHHHHhC
Q 010613 361 QVMELESLLSMTMASDKS-GLQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ 432 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~-g~~v~iHa~Gd-~av~~~l~a~------e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~l 432 (506)
..+++++++++++.|+++ |+++++|+.+. ..++.+++.+ -+...+.|..+.|..++||.++++++++++++.
T Consensus 181 ~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~ 260 (401)
T TIGR02967 181 PTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAET 260 (401)
T ss_pred CcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHHc
Confidence 457899999999999999 99999999754 3555554432 223456788899999999999999999999999
Q ss_pred CCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhH
Q 010613 433 GIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYI 498 (506)
Q Consensus 433 gv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~ 498 (506)
|+.+++||.++++ ++ .+.+|+++++++|++|++| |+++. ++.+++.+|+.+
T Consensus 261 g~~v~~~P~~~~~--------~~----~g~~~~~~~~~~Gv~v~lGtD~~~~---~~~~~~~~~~~~ 312 (401)
T TIGR02967 261 GAAIAHCPTSNLF--------LG----SGLFNLKKALEHGVRVGLGTDVGGG---TSFSMLQTLREA 312 (401)
T ss_pred CCeEEEChHHHHH--------hc----cCCCCHHHHHHCCCeEEEecCCCCC---CCcCHHHHHHHH
Confidence 9999999987431 22 3678999999999999999 97642 244556555543
No 21
>PRK14085 imidazolonepropionase; Provisional
Probab=99.92 E-value=8.9e-24 Score=219.62 Aligned_cols=281 Identities=21% Similarity=0.287 Sum_probs=174.7
Q ss_pred ccEEEEc-CEEEeCCCCC-------ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccc
Q 010613 45 ADLVVTN-GVIFTGDDSL-------LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116 (506)
Q Consensus 45 ~~~ii~n-~~I~t~~~~~-------~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g 116 (506)
++++|+| +.|+|+++.. ..+.+|+|+||||++||+..+.+ ...++||++|++|||||||+|+|+...+
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~----~~~~~iD~~g~~v~PGlId~H~Hl~~~~ 76 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAP----AADERVDAGGRAVLPGFVDSHSHLVFAG 76 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCC----CCCeEEeCCCCEEecCeEecCcCccccC
Confidence 4689999 5999997543 45679999999999999863322 3568999999999999999999986432
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHH
Q 010613 117 LQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVAL 196 (506)
Q Consensus 117 ~~~~~~~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL 196 (506)
.. + ..+.. |..+..|.
T Consensus 77 ~r-------~-----------~~~~~------~~~~~~~~---------------------------------------- 92 (382)
T PRK14085 77 DR-------S-----------AEFAA------RMAGEPYS---------------------------------------- 92 (382)
T ss_pred Ch-------h-----------HHHHh------hhcCCCcc----------------------------------------
Confidence 10 0 00000 00000000
Q ss_pred HHcCCCCCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcc
Q 010613 197 QLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESV 276 (506)
Q Consensus 197 ~~~gi~~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~ 276 (506)
.++ +..........+.+++.......++++++.|+|++.|++. + +.
T Consensus 93 ------------~~~------------------i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~-~-~~-- 138 (382)
T PRK14085 93 ------------AGG------------------IRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTG-Y-GL-- 138 (382)
T ss_pred ------------CCC------------------hHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCc-C-CC--
Confidence 000 0000111124578888899999999999999999999762 1 11
Q ss_pred cCchHHHHHHHHHHHhcC-CCe-eEEEEccCc--cchhhHHHH-----HHhcCCcCCCcEEEceEEEeecCCcCcccccc
Q 010613 277 QLSWEDFADVYQWASYSE-KMK-IRVCLFFPL--ETWSSLADL-----INKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (506)
Q Consensus 277 ~~~~~~~~~~~~~l~~~g-~l~-~Rv~~~~~~--~~~~~~~~~-----~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l 347 (506)
...+..+..+...+.. ... .+....... .+.+...+. ...... ....+|++.+|.
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~idi~~~~~-------- 202 (382)
T PRK14085 139 --TVEDEARSARIAAEFTDEVTFLGAHVVPPEYAGDADEYVDLVCGPMLDAVAP------HARWIDVFCERG-------- 202 (382)
T ss_pred --CHHHHHHHHHHHHHhhhcceeeccccCCcccCCCHHHHHHHHHHHHHHHHHH------hCCeEEEEecCC--------
Confidence 1122112222211100 011 111111110 000111000 000000 122357776652
Q ss_pred cCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch---HHHHHHHHHHHHHHhcCCCCCCceEeecccCChh
Q 010613 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASG 424 (506)
Q Consensus 348 ~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~---av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~ 424 (506)
.+++++++++++.|+++|+++++|+.|.. +++.+++ .| ..+++||++++++
T Consensus 203 --------------~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~--------~g----~~~i~H~~~l~~~ 256 (382)
T PRK14085 203 --------------AFDEDQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVE--------LG----AASVDHCTYLTDA 256 (382)
T ss_pred --------------CCCHHHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHH--------cC----CCcHHHhCCCCHH
Confidence 35789999999999999999999998632 3444332 23 3479999999999
Q ss_pred HHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-ccc
Q 010613 425 TAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGL 481 (506)
Q Consensus 425 ~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~ 481 (506)
++++|++.|+.+++||.+++. . ..+.+|+++++++||+|++| |++
T Consensus 257 ~~~~la~~gv~~~~~P~~~~~--------~----~~~~~~~~~l~~aGv~v~lgsD~~ 302 (382)
T PRK14085 257 DVDALAGSGTVATLLPGAEFS--------T----RQPYPDARRLLDAGVTVALASDCN 302 (382)
T ss_pred HHHHHHHcCCEEEECcHHHHh--------c----CCCCchHHHHHHCCCcEEEEeCCC
Confidence 999999999999999987421 1 13568999999999999999 974
No 22
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.92 E-value=1.3e-23 Score=220.80 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=91.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeeccchH-HHHHHHHH----HHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCE
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~a-v~~~l~a~----e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~ 435 (506)
..++++.++++++.|++ |+++++|+.+... ++.+.+.+ -+...+.|..++|+.++||++++++++++|+++|+.
T Consensus 202 ~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~ 280 (418)
T cd01313 202 RAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAV 280 (418)
T ss_pred CCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCE
Confidence 36799999999999999 9999999975432 22222111 112345678899999999999999999999999999
Q ss_pred EEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhH
Q 010613 436 ASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYI 498 (506)
Q Consensus 436 ~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~ 498 (506)
+++||.++. +++ .+.+|+++++++||+|++| |+.. +.+++++|+.+
T Consensus 281 v~~~P~sn~--------~lg----~g~~p~~~l~~~Gv~v~lGtD~~~-----~~d~~~~~~~~ 327 (418)
T cd01313 281 VGLCPTTEA--------NLG----DGIFPAAALLAAGGRIGIGSDSNA-----RIDLLEELRQL 327 (418)
T ss_pred EEECCCchh--------hcc----CCCCCHHHHHHCCCcEEEecCCCC-----CcCHHHHHHHH
Confidence 999998742 233 4789999999999999999 9642 24555555443
No 23
>PRK09228 guanine deaminase; Provisional
Probab=99.91 E-value=8.5e-23 Score=215.34 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=96.1
Q ss_pred cCCCHHHHHHHHHHHHHC-CCeEEEeeccch-HHHHHHHHH------HHHHHhcCCCCCCceEeecccCChhHHHHHHhC
Q 010613 361 QVMELESLLSMTMASDKS-GLQVAIHAIGDR-ANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ 432 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~-g~~v~iHa~Gd~-av~~~l~a~------e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~l 432 (506)
..++++.+++..+.|+++ |+++++|..+.. ..+.+.+.+ .+...+.|..+.|+.++||++++++++++|++.
T Consensus 206 ~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~ 285 (433)
T PRK09228 206 PTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAET 285 (433)
T ss_pred CcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHc
Confidence 357899999999999998 999999997533 334443322 233566788899999999999999999999999
Q ss_pred CCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhH
Q 010613 433 GIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYI 498 (506)
Q Consensus 433 gv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~ 498 (506)
|+.+++||.++. +++ .+.+|+++++++|++|++| |+++. ++++++.+|+..
T Consensus 286 g~~v~~~P~sn~--------~lg----~g~~~~~~~~~~Gv~v~lGtD~~~~---~~~d~~~~~~~~ 337 (433)
T PRK09228 286 GAAIAFCPTSNL--------FLG----SGLFDLKRADAAGVRVGLGTDVGGG---TSFSMLQTMNEA 337 (433)
T ss_pred CCeEEECCccHH--------hhc----CCCcCHHHHHHCCCeEEEecCCCCC---CCCCHHHHHHHH
Confidence 999999998742 232 3689999999999999999 98642 345566555443
No 24
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.91 E-value=8.4e-23 Score=211.70 Aligned_cols=206 Identities=12% Similarity=0.108 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEccCccc-----hh-hHHH
Q 010613 241 SVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLET-----WS-SLAD 314 (506)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~~~~~-----~~-~~~~ 314 (506)
++++.+.+.+.++.++++.|+|++.|++.. . +..+.+. +.++|..++....+ +. ...+
T Consensus 69 ~~e~~~~~a~~~~~E~l~~G~Tt~~d~~~~----------~---~~~~a~~---~~GiR~~~~~~~~~~~~~~~~~~~~~ 132 (381)
T cd01312 69 LKQPWEEAIRQGIRQMLESGTTSIGAISSD----------G---SLLPALA---SSGLRGVFFNEVIGSNPSAIDFKGET 132 (381)
T ss_pred ChHHHHHHHHHHHHHHHHhCCeEEEEecCC----------H---HHHHHHH---HcCCcEEEEEeeECCCCchhhhhHHH
Confidence 566777889999999999999999998620 1 1334443 35688766432211 11 1111
Q ss_pred HHHhc---CCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchH
Q 010613 315 LINKT---GHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA 391 (506)
Q Consensus 315 ~~~~~---~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~a 391 (506)
..... .++.++++++ . -..+ +...++++.++++.+.|+++|+++++|+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~v~~-----~---------~~p~----------a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~ 188 (381)
T cd01312 133 FLERFKRSKSFESQLFIP-----A---------ISPH----------APYSVHPELAQDLIDLAKKLNLPLSTHFLESKE 188 (381)
T ss_pred HHHHHHHhhccCccceEE-----E---------ECCC----------CCcccCHHHHHHHHHHHHHcCCeEEEEecCcHH
Confidence 11110 0001111111 0 0112 233678999999999999999999999986542
Q ss_pred H-HHHHHH----------H------------HHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchhHhhhhh
Q 010613 392 N-DLVLDM----------Y------------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTTFWQSI 448 (506)
Q Consensus 392 v-~~~l~a----------~------------e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~~~~~~ 448 (506)
- ..+.+. + -+...+.|..++|..++||++++++++++|++.|+.+++||.++ +
T Consensus 189 e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P~sn----~ 264 (381)
T cd01312 189 EREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHCVYANLEEAEILASRGASIALCPRSN----R 264 (381)
T ss_pred HHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEECCcCCHHHHHHHHHcCCeEEECcchh----h
Confidence 2 221111 0 12345678889999999999999999999999999999999863 2
Q ss_pred cCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHHH
Q 010613 449 VNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIFT 500 (506)
Q Consensus 449 ~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~~ 500 (506)
+++ .+.+|+++++++|++|++| |+++++ +..+++.+|+.+..
T Consensus 265 ----~lg----~g~~p~~~~~~~Gv~v~lGtD~~~~~--~~~d~~~~~~~~~~ 307 (381)
T cd01312 265 ----LLN----GGKLDVSELKKAGIPVSLGTDGLSSN--ISLSLLDELRALLD 307 (381)
T ss_pred ----hhc----CCCcCHHHHHHCCCcEEEeCCCCccC--CCCCHHHHHHHHHH
Confidence 233 3678999999999999999 987643 34566666655443
No 25
>PRK07213 chlorohydrolase; Provisional
Probab=99.91 E-value=3.1e-22 Score=207.47 Aligned_cols=291 Identities=19% Similarity=0.234 Sum_probs=184.6
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccCCC
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l~~ 126 (506)
++|+|++|++++.......+|+|++|+|.+||+.. +..++||+.|++| |||||+|+|+..... ++
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~-------~~~~~id~~g~~v-PGlvd~H~H~~~~~~-------rg 66 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV-------HEGNVIDAKGLVI-PPLINAHTHIGDSSI-------KD 66 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC-------CCCeEEeCCCCEe-cceeeeccccCchhh-------hc
Confidence 57899999997644446678999999999998641 3458999999999 999999999864311 00
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCCCC
Q 010613 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSE 206 (506)
Q Consensus 127 ~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~~~ 206 (506)
.++ ..+..+++..
T Consensus 67 --------------------------~~~-------~~~l~~~~~~---------------------------------- 79 (375)
T PRK07213 67 --------------------------IGI-------GKSLDELVKP---------------------------------- 79 (375)
T ss_pred --------------------------CCC-------CCCHHHHccC----------------------------------
Confidence 010 0111111100
Q ss_pred CCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHH
Q 010613 207 DPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV 286 (506)
Q Consensus 207 ~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~ 286 (506)
.+| +.. . .....+++++....+.++.++++.|+|++.|+.. . ....+ ++
T Consensus 80 --~~~------------~~~-----~---~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~--~------~~~~~-~~ 128 (375)
T PRK07213 80 --PNG------------LKH-----K---FLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFRE--G------GIKGI-NL 128 (375)
T ss_pred --CCc------------chH-----H---HHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhh--c------ChhHH-HH
Confidence 000 000 0 0124578888999999999999999999999641 0 11111 22
Q ss_pred HHHHHhcCCCeeEEEEc-cCcc-chhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCC
Q 010613 287 YQWASYSEKMKIRVCLF-FPLE-TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME 364 (506)
Q Consensus 287 ~~~l~~~g~l~~Rv~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s 364 (506)
++++. .++++|..+. .... ..+.+.+.... ++ + ..||. +..+...++
T Consensus 129 ~~~a~--~~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~-----~-~~~g~----------------~~~~~~~~s 177 (375)
T PRK07213 129 LKKAS--SDLPIKPIILGRPTEADENELKKEIRE-------IL-----K-NSDGI----------------GLSGANEYS 177 (375)
T ss_pred HHHHH--HcCCCceEEecCCCcccchhhHHHHHH-------HH-----H-hcccc----------------cccccccCC
Confidence 33332 2567777532 1111 01111111111 01 1 01221 112334578
Q ss_pred HHHHHHHHHHHHHCCCeEEEeeccchH-HHHHHHH-----HHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEe
Q 010613 365 LESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDM-----YKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASM 438 (506)
Q Consensus 365 ~e~l~~~~~~a~~~g~~v~iHa~Gd~a-v~~~l~a-----~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~ 438 (506)
+++++++++.|+++|+++++|+.+... ...+.+. ++. ..+.|.. ++ .++||++++++++++|++.|+.+++
T Consensus 178 ~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~-~~~~G~~-~~-~i~H~~~~~~~~i~~la~~g~~v~~ 254 (375)
T PRK07213 178 DEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIER-LINLGFK-PD-FIVHATHPSNDDLELLKENNIPVVV 254 (375)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHH-HHhcCCC-CC-EEEECCCCCHHHHHHHHHcCCcEEE
Confidence 999999999999999999999976442 2222221 222 2345664 45 6999999999999999999999999
Q ss_pred cchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHH
Q 010613 439 QVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIF 499 (506)
Q Consensus 439 ~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~ 499 (506)
||.++.+ ++ .+.+|+++++++||+|++| |+.++ ++.+++.+|+.+.
T Consensus 255 ~P~sn~~--------l~----~g~~~v~~l~~~Gv~v~lGTD~~~~---~~~~~~~e~~~~~ 301 (375)
T PRK07213 255 CPRANAS--------FN----VGLPPLNEMLEKGILLGIGTDNFMA---NSPSIFREMEFIY 301 (375)
T ss_pred CCcchhh--------hc----cCCccHHHHHHCCCEEEEeeCCCCC---chHhHHHHHHHHH
Confidence 9987432 22 3689999999999999999 98654 3456676766553
No 26
>PRK09230 cytosine deaminase; Provisional
Probab=99.90 E-value=4.8e-22 Score=209.00 Aligned_cols=304 Identities=13% Similarity=0.157 Sum_probs=183.1
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~ 123 (506)
.++++|+|+++++.. . ..+|.|+||+|.+||+..+.. .+..++||++|++|+|||||+|+|+...-.
T Consensus 3 ~~~~li~~~~~~~~~--~--~~~i~i~~g~I~~i~~~~~~~---~~~~~~id~~g~~v~PGlid~H~H~~~~~~------ 69 (426)
T PRK09230 3 NALMTIKNARLPGKE--G--LWQITIEDGKISAIEPQSEAS---LEAGEVLDAEGGLAIPPFIEPHIHLDTTQT------ 69 (426)
T ss_pred CceEEEECcEEcCCC--e--eEEEEEECCEEEEecCCCCCC---CCCCceEeCCCCEeccceeEEEEcccccee------
Confidence 367899999998743 2 258999999999999863321 135689999999999999999999864211
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCC
Q 010613 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (506)
Q Consensus 124 l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~ 203 (506)
.+.. -|. ...+..++|+..
T Consensus 70 -~~~~-------------------------~~~-----~~~~l~~~i~~~------------------------------ 88 (426)
T PRK09230 70 -AGEP-------------------------NWN-----QSGTLFEGIERW------------------------------ 88 (426)
T ss_pred -cCCC-------------------------ccC-----CCCCHHHHHHHH------------------------------
Confidence 0000 000 001111222110
Q ss_pred CCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHH
Q 010613 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (506)
Q Consensus 204 ~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~ 283 (506)
.......+.+++......++.++++.|+|++.++.. .. ......++.+
T Consensus 89 ------------------------------~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d-~~-~~~~~~~~a~ 136 (426)
T PRK09230 89 ------------------------------AERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVD-VS-DPTLTALKAM 136 (426)
T ss_pred ------------------------------HHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccc-cC-CcchhHHHHH
Confidence 000113477888999999999999999999999863 11 0100112222
Q ss_pred HHHHHHHHhcCCCeeEEEEccCccchhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCC
Q 010613 284 ADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVM 363 (506)
Q Consensus 284 ~~~~~~l~~~g~l~~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~ 363 (506)
.++.++....-++.+|........+.+...+..+...+...+ ++ |. ..+.||. ..+
T Consensus 137 ~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~a~~~~~~--------~v--g~------~p~~~~~--------~~~ 192 (426)
T PRK09230 137 LEVKEEVAPWVDLQIVAFPQEGILSYPNGEALLEEALRLGAD--------VV--GA------IPHFEFT--------REY 192 (426)
T ss_pred HHHHHHhhCcceEEEEeccCccccCCccHHHHHHHHHHcCCC--------EE--eC------CCCcccc--------chh
Confidence 233333333344555543221111111111222211111001 11 11 1122332 124
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHHHHHHHhcCCCCCCceEeecccC-------ChhHHHHHHhCCCE
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL-------ASGTAARFGDQGIV 435 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i-------~~~~i~r~a~lgv~ 435 (506)
+++.++++.+.|+++|+++++|+.+.. ..+.......+...+.| .+.|..+.||.++ ++++++++++.|+.
T Consensus 193 ~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~ 271 (426)
T PRK09230 193 GVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGIN 271 (426)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCe
Confidence 689999999999999999999997522 11222222334445567 5889999999999 58899999999999
Q ss_pred EEecchhHhhhh-hcCccccccccccccccccchhccccccccc-cccc
Q 010613 436 ASMQVWTTFWQS-IVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLF 482 (506)
Q Consensus 436 ~s~~P~~~~~~~-~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a 482 (506)
+++||.++++.. ... ..-+.++++|+++|+++||+|++| |+..
T Consensus 272 vv~cP~sn~~l~~~~~----~~p~~~g~~pi~~l~~aGv~V~lGTD~~~ 316 (426)
T PRK09230 272 FVANPLVNIHLQGRFD----TYPKRRGITRVKEMLEAGINVCFGHDDVF 316 (426)
T ss_pred EEECcchhhhhcCCCC----CCCCCCCCcCHHHHHHCCCeEEEecCCCC
Confidence 999999864311 100 000135789999999999999999 9765
No 27
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.90 E-value=5.1e-22 Score=207.17 Aligned_cols=311 Identities=18% Similarity=0.208 Sum_probs=176.6
Q ss_pred EEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccCCCCC
Q 010613 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVS 128 (506)
Q Consensus 49 i~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l~~~~ 128 (506)
|+|++|+++. ....+|+|+||+|++||+..+. .+..++||++|++|+|||||+|+|+...-. .+.
T Consensus 2 ~~~~~~~~~~---~~~~~v~I~~g~I~~Vg~~~~~----~~~~~vID~~g~~v~PGlId~H~H~~~~~~-------~~~- 66 (398)
T cd01293 2 LRNARLADGG---TALVDIAIEDGRIAAIGPALAV----PPDAEEVDAKGRLVLPAFVDPHIHLDKTFT-------GGR- 66 (398)
T ss_pred eeeeEEeCCC---ceEEEEEEECCEEEEEecCCCC----CCCCceEeCCCCEEccCEeeeeeccCcccc-------cCC-
Confidence 6799999973 3567899999999999976442 246789999999999999999999853211 000
Q ss_pred CHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCCCCCC
Q 010613 129 HKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDP 208 (506)
Q Consensus 129 s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~~~~p 208 (506)
+. ......++..+
T Consensus 67 --------------------------~~------~~~~~~~~~~~----------------------------------- 79 (398)
T cd01293 67 --------------------------WP------NNSGGTLLEAI----------------------------------- 79 (398)
T ss_pred --------------------------CC------CCCccccHHHH-----------------------------------
Confidence 00 00000000000
Q ss_pred CCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHH
Q 010613 209 NGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQ 288 (506)
Q Consensus 209 ~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~ 288 (506)
..........++++.....+..+.++++.|+|++.++....+... ...++.+.++.+
T Consensus 80 ----------------------~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~-~~~~~~~~~~~~ 136 (398)
T cd01293 80 ----------------------IAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAG-LKALEALLELRE 136 (398)
T ss_pred ----------------------HHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeeccccccc-chHHHHHHHHHH
Confidence 000000123477888888899999999999999988652111000 011222222222
Q ss_pred HHHhcCCCeeEEEEccCcc--chhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHH
Q 010613 289 WASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELE 366 (506)
Q Consensus 289 ~l~~~g~l~~Rv~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e 366 (506)
.+. ..+......+.... ..+...+++++..+...+. ++ |. ++. +...++++
T Consensus 137 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-----~~----~~----------~~~------~~~~~s~e 189 (398)
T cd01293 137 EWA--DLIDLQIVAFPQHGLLSTPGGEELMREALKMGADV-----VG----GI----------PPA------EIDEDGEE 189 (398)
T ss_pred Hhh--ccceEEEEeccCccccCCCCHHHHHHHHHHhCCCE-----Ee----CC----------CCC------cCCccHHH
Confidence 221 11212111111110 0012222222111100000 00 10 111 12356899
Q ss_pred HHHHHHHHHHHCCCeEEEeecc--chHHHHHHHHHHHHHHhcCCCCCCceEeecccCCh-------hHHHHHHhCCCEEE
Q 010613 367 SLLSMTMASDKSGLQVAIHAIG--DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARFGDQGIVAS 437 (506)
Q Consensus 367 ~l~~~~~~a~~~g~~v~iHa~G--d~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~-------~~i~r~a~lgv~~s 437 (506)
+++++++.|+++|+++++|+.+ +.........++.+ .+.|.. .|+.++||.++++ +.+++|++.|+.++
T Consensus 190 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~-~~~g~~-~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~ 267 (398)
T cd01293 190 SLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEA-ERRGMQ-GRVTCSHATALGSLPEAEVSRLADLLAEAGISVV 267 (398)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHH-HHhCCC-CCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEE
Confidence 9999999999999999999853 33222222223322 344654 6889999999873 45999999999999
Q ss_pred ecchhHhhhhhcCccccccccccccccccchhccccccccc-ccccc--ccccCCCCCcchh
Q 010613 438 MQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC--YMLVTCRPRNNFS 496 (506)
Q Consensus 438 ~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~--~~~~~~~~~~~~~ 496 (506)
+||.++++.... ...++ ...+.+|+++++++||+|++| |++.. ++.++.+++..|.
T Consensus 268 ~~p~s~~~l~~~-~~~~~--~~~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~~~~~~~~~~ 326 (398)
T cd01293 268 SLPPINLYLQGR-EDTTP--KRRGVTPVKELRAAGVNVALGSDNVRDPWYPFGSGDMLEVAN 326 (398)
T ss_pred eCCCcchhhccc-ccCCC--CCCCCCcHHHHHHCCCeEEECCCCCCCCCcCCCCCCHHHHHH
Confidence 999875321110 00111 134678999999999999999 98532 1233445555444
No 28
>PRK09356 imidazolonepropionase; Validated
Probab=99.90 E-value=3.9e-22 Score=209.08 Aligned_cols=309 Identities=22% Similarity=0.256 Sum_probs=180.6
Q ss_pred cccEEEEcCEEEeCCCC------CceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDS------LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGL 117 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~------~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~ 117 (506)
+++++|+|++|++++.. ....++|+|+||||.+||+..+.+. ....++||++|++|||||||+|+|+...+.
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~--~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~ 79 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA--AYAAEVIDAGGKLVTPGLIDCHTHLVFGGN 79 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc--ccCceEEECCCCEEeeceEecCCCcccCCC
Confidence 47899999999998743 2346799999999999998644321 123689999999999999999999864321
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHH
Q 010613 118 QMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQ 197 (506)
Q Consensus 118 ~~~~~~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~ 197 (506)
...+ . .... ...+ +.+.+.+
T Consensus 80 ----------~~~~-~-----~~~~-------------------~~~~---~~~~~~~---------------------- 99 (406)
T PRK09356 80 ----------RANE-F-----ELRL-------------------QGVS---YEEIAAQ---------------------- 99 (406)
T ss_pred ----------cHHH-H-----HHHH-------------------CCCc---HHHHHHh----------------------
Confidence 0000 0 0000 0000 0000000
Q ss_pred HcCCCCCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCccc
Q 010613 198 LVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQ 277 (506)
Q Consensus 198 ~~gi~~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~ 277 (506)
.|| +. .. .......+.+++....+.++.++++.|+|++.|+.. + +...+
T Consensus 100 -----------~~~------------~~-----~~-~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~-~-~~~~~ 148 (406)
T PRK09356 100 -----------GGG------------IL-----ST-VRATRAASEEELFAQALPRLDALLAEGVTTVEIKSG-Y-GLDLE 148 (406)
T ss_pred -----------cCC------------hH-----HH-HHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeecc-C-CCCHH
Confidence 000 00 00 001113467788888899999999999999998642 1 11110
Q ss_pred CchHHHHHHHHHHHhcCCCeeEEEEccC----c-cch-hh----HHH----HHHhcCCcCCCcEEEceEEEeecCCcCcc
Q 010613 278 LSWEDFADVYQWASYSEKMKIRVCLFFP----L-ETW-SS----LAD----LINKTGHVLSDWVYLGGVKAFADGSLGSN 343 (506)
Q Consensus 278 ~~~~~~~~~~~~l~~~g~l~~Rv~~~~~----~-~~~-~~----~~~----~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ 343 (506)
.....+++++.+..+. ++|+..... . ... .. +.. +.+.... .. .+.++|.+.
T Consensus 149 -~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~i~~~~------- 214 (406)
T PRK09356 149 -TELKMLRVARRLGEEH--PVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAE--EG--LADAVDVFC------- 214 (406)
T ss_pred -HHHHHHHHHHHHhhhC--CCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHh--cC--CcceEEEEe-------
Confidence 0111224444443322 344332111 0 000 01 111 1111000 00 122233221
Q ss_pred cccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCCh
Q 010613 344 SALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS 423 (506)
Q Consensus 344 ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~ 423 (506)
+...+++++++++++.|+++|+++++|+.+...... ++.+. +.+ +..++||+++++
T Consensus 215 ---------------~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~----~~~~~-~~~----~~~~~H~~~~~~ 270 (406)
T PRK09356 215 ---------------ETGAFSVEQSERVLEAAKALGLPVKIHAEQLSNLGG----AELAA-EYG----ALSADHLEYLDE 270 (406)
T ss_pred ---------------cCCCCCHHHHHHHHHHHHHCCCCEEEEEecccCCCH----HHHHH-HcC----CcEehHhhcCCH
Confidence 112468999999999999999999999975332111 11111 122 568999999999
Q ss_pred hHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHH
Q 010613 424 GTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIF 499 (506)
Q Consensus 424 ~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~ 499 (506)
+++++++++|+.+++||.++++ ++ ..+..|+++++++|+++++| |+.. ..+|+..|...+
T Consensus 271 ~~~~~la~~g~~~~~~P~~~~~--------l~---~~~~~~~~~l~~~Gi~v~lgtD~~~-----~~~~~~~~~~~~ 331 (406)
T PRK09356 271 AGIAAMAEAGTVAVLLPGAFYF--------LR---ETQYPPARLLRDAGVPVALATDFNP-----GSSPTESLLLAM 331 (406)
T ss_pred HHHHHHHHhCCEEEECccchhh--------cC---cccCchHHHHHHCCCeEEEeCCCCC-----CCChhHHHHHHH
Confidence 9999999999999999987531 21 12578999999999999999 9742 124555555444
No 29
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.90 E-value=3.8e-22 Score=212.04 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=95.2
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEeeccc-hHHHHHHHHHH----HHHHhcCCCCCCceEeecccCChhHHHHHHhCCC
Q 010613 360 LQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGI 434 (506)
Q Consensus 360 ~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd-~av~~~l~a~e----~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv 434 (506)
...++++.++++++.| ++|+++++|+.+. ..+..+++.+. +...+.|..+.|+.++||++++++++++|+++|+
T Consensus 210 ~~~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~ 288 (456)
T PRK09229 210 LRAVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGA 288 (456)
T ss_pred CCCCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCC
Confidence 3468999999999999 9999999999763 33343333221 1234578889999999999999999999999999
Q ss_pred EEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHH
Q 010613 435 VASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIF 499 (506)
Q Consensus 435 ~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~ 499 (506)
.+++||.++ . ++| ++.+|+++++++|++|++| |++. +.++|.+|+.+.
T Consensus 289 ~v~~~P~sn----~----~lg----~g~~p~~~l~~~Gv~v~lGtD~~~-----~~d~~~~~~~~~ 337 (456)
T PRK09229 289 VAGLCPTTE----A----NLG----DGIFPAVDYLAAGGRFGIGSDSHV-----SIDLVEELRLLE 337 (456)
T ss_pred eEEECchhh----h----hhc----CCCCCHHHHHHCCCeEEEecCCCC-----CCCHHHHHHHHH
Confidence 999999863 2 233 4789999999999999999 9642 346666665544
No 30
>PRK05985 cytosine deaminase; Provisional
Probab=99.90 E-value=8.3e-22 Score=205.52 Aligned_cols=301 Identities=19% Similarity=0.190 Sum_probs=180.9
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~ 123 (506)
+++++|+|++|+++. ..+|.|+||+|.+|++..+.. ++.++||++|++|+|||||+|+|+...+...
T Consensus 1 ~~~~~i~~~~i~~~~-----~~~v~i~~g~i~~i~~~~~~~----~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~---- 67 (391)
T PRK05985 1 MTDLLFRNVRPAGGA-----AVDILIRDGRIAAIGPALAAP----PGAEVEDGGGALALPGLVDGHIHLDKTFWGD---- 67 (391)
T ss_pred CCCEEEECcEECCCC-----eeEEEEECCEEEEecCCCCCC----CCCcEEECCCCEEecceEeeEEccCccccCC----
Confidence 367899999999864 358999999999999864321 3567999999999999999999996432110
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCC
Q 010613 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (506)
Q Consensus 124 l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~ 203 (506)
.|... ...++..
T Consensus 68 ------------------------------~~~~~---~~~~~~~----------------------------------- 79 (391)
T PRK05985 68 ------------------------------PWYPN---EPGPSLR----------------------------------- 79 (391)
T ss_pred ------------------------------ccccC---CCCCCHH-----------------------------------
Confidence 00000 0000000
Q ss_pred CCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHH
Q 010613 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (506)
Q Consensus 204 ~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~ 283 (506)
+. +..-.. ....+.+++.......++++++.|+|++.|+....++... ..++++
T Consensus 80 -----------------------~~-i~~~~~-~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~-~~~~~~ 133 (391)
T PRK05985 80 -----------------------ER-IANERR-RRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGL-RHLEAV 133 (391)
T ss_pred -----------------------HH-HHHHHH-hhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCccc-chHHHH
Confidence 00 000000 0022556667778888999999999999997632221111 123333
Q ss_pred HHHHHHHHhcCCCeeEEEEccCccchh--hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCccc
Q 010613 284 ADVYQWASYSEKMKIRVCLFFPLETWS--SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (506)
Q Consensus 284 ~~~~~~l~~~g~l~~Rv~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~ 361 (506)
.++.+.. ++.+.+.+..+.+..... ...+++++.-+ .+ .|. ++.. .|+ ...
T Consensus 134 ~~~~~~~--~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~-------~g-----~~~-~gg~-----~p~-------~~~ 186 (391)
T PRK05985 134 LAARETL--RGLIDIQIVAFPQSGVLSRPGTAELLDAALR-------AG-----ADV-VGGL-----DPA-------GID 186 (391)
T ss_pred HHHHHHh--hCcccEEEEeccCccccCCcCHHHHHHHHHH-------cC-----CCE-EeCC-----CCC-------CcC
Confidence 2332221 234555555443211111 11222221100 00 110 1110 121 122
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEee--ccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCC-------hhHHHHHHhC
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHA--IGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-------SGTAARFGDQ 432 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa--~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~-------~~~i~r~a~l 432 (506)
..+++.++++++.|+++|+++++|+ .+|.+...+...++.+. +.|.. .|..++|+..++ ++.++++++.
T Consensus 187 ~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~-~~g~~-~~~~i~H~~~l~~~~~~~~~~~i~~lae~ 264 (391)
T PRK05985 187 GDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTR-ALGMQ-GRVAVSHAFCLGDLPEREVDRLAERLAEA 264 (391)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHH-HhCCC-CCEehhhhhhhhcCCHHHHHHHHHHHHHc
Confidence 4678999999999999999987775 56766666666666554 34543 378999998774 3568999999
Q ss_pred CCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhh
Q 010613 433 GIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSY 497 (506)
Q Consensus 433 gv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~ 497 (506)
|+.+++||.. .++++|+++++++|++|++| |++.+ +.++++..++++.
T Consensus 265 g~~v~~~~~~----------------~~~~~~~~~l~~~Gv~v~lGtD~~~~-~~~p~~~~~~~~~ 313 (391)
T PRK05985 265 GVAIMTNAPG----------------SVPVPPVAALRAAGVTVFGGNDGIRD-TWWPYGNGDMLER 313 (391)
T ss_pred CCeEEEeCCC----------------CCCCCCHHHHHHCCCeEEEecCCCCC-CCcCCCCCcHHHH
Confidence 9999988531 24689999999999999999 98764 2333333444443
No 31
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.90 E-value=5e-22 Score=208.97 Aligned_cols=297 Identities=20% Similarity=0.221 Sum_probs=192.9
Q ss_pred cEEEEcCEEEeCCCCC-ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 46 DLVVTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 46 ~~ii~n~~I~t~~~~~-~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
.+++.+..+++.++.. ...+++.|+||||+.||...+.. ++.+++|++|++|+|||||+|+|+.++...
T Consensus 3 ~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~----~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~------ 72 (421)
T COG0402 3 MLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGP----PDEEVIDAKGKLVLPGFVNAHTHLDQTLLR------ 72 (421)
T ss_pred ceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCC----CCceeecCCCCEeccCccccccchHHHHHh------
Confidence 3578888888875433 25689999999999999875432 467899999999999999999997654321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhh-hCCCCeEEEEecCCchhhhcHHHHHHcCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDD-ITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~-~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~ 203 (506)
... ...+...||++ +.+...
T Consensus 73 --------------g~~--------------------~~~~l~~wl~~~~~~~~~------------------------- 93 (421)
T COG0402 73 --------------GLA--------------------DDLPLLEWLERYVWPREA------------------------- 93 (421)
T ss_pred --------------hhh--------------------cccchHHHHHHHHhHHHh-------------------------
Confidence 000 01223445543 222100
Q ss_pred CCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHH
Q 010613 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (506)
Q Consensus 204 ~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~ 283 (506)
-..++++.+...+.++.+++++|+|++..... ..+...+
T Consensus 94 ----------------------------------~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~-----~~~~~~~-- 132 (421)
T COG0402 94 ----------------------------------RLLTEEDLYARALLALLEMLRNGTTTARTHVD-----VVAESAD-- 132 (421)
T ss_pred ----------------------------------hcCCHHHHHHHHHHHHHHHHhcCccccccccc-----hhhhhHH--
Confidence 02467888999999999999999999443321 1111111
Q ss_pred HHHHHHHHhcCCCeeEEEEccCccc------h---hh----HHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCC
Q 010613 284 ADVYQWASYSEKMKIRVCLFFPLET------W---SS----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEP 350 (506)
Q Consensus 284 ~~~~~~l~~~g~l~~Rv~~~~~~~~------~---~~----~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~p 350 (506)
.+++++. ++.+|+.....+.. . .. ..+++++ +.+.+.+++. +. |
T Consensus 133 -~~~~a~~---~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~----------p 189 (421)
T COG0402 133 -AAFEAAL---EVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLRE-------AHGLGRDVVG--LA----------P 189 (421)
T ss_pred -HHHHHHH---HhCCeeEeeeccccCCCCcccccchHHHHHHHHHHHH-------HhcCCCeeEE--Ee----------c
Confidence 2344443 34466654432111 0 01 1122221 1111111111 00 1
Q ss_pred cCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHH----HHHHHHHhcCCCCCCceEeecccCChhH
Q 010613 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLD----MYKSVVVTTGKRDQRFRIEHAQHLASGT 425 (506)
Q Consensus 351 Y~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~----a~e~~~~~~g~~~~r~~i~H~~~i~~~~ 425 (506)
+....++++.++.+.+.++++|.++++|+.+.. .+..+.+ ..-+...+.|..+.|..+.||+++++++
T Consensus 190 -------~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e 262 (421)
T COG0402 190 -------HFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEE 262 (421)
T ss_pred -------CCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHH
Confidence 222367999999999999999999999998643 4444443 1112234678888999999999999999
Q ss_pred HHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchh
Q 010613 426 AARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFS 496 (506)
Q Consensus 426 i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~ 496 (506)
++++++.|+.+++||.++ + +++ ++++|++++++.|++|++| |+.++| ++++||.+|.
T Consensus 263 ~~~l~~~g~~v~~cP~sN----~----~L~----sG~~p~~~~~~~gv~v~~gTD~~~~~--~~~d~l~~~~ 320 (421)
T COG0402 263 LELLAESGASVVHCPRSN----L----KLG----SGIAPVRRLLERGVNVALGTDGAASN--NVLDMLREMR 320 (421)
T ss_pred HHHHhhCCCeEEECcchh----c----ccc----CCCCCHHHHHHcCCCEEEecCCcccc--ChHHHHHHHH
Confidence 999999999999999874 3 343 4789999999999999999 998764 3344444443
No 32
>PRK07572 cytosine deaminase; Validated
Probab=99.89 E-value=3.4e-21 Score=202.95 Aligned_cols=298 Identities=17% Similarity=0.200 Sum_probs=179.6
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccccC
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l 124 (506)
++++|+|++|+++. ...+|.|+||+|.+|++..+. ...+++|++|++|+|||||+|+|+.....
T Consensus 2 ~~~~i~~~~i~~~~----~~~~i~i~~g~I~~v~~~~~~-----~~~~~id~~g~~~~PG~id~h~h~~~~~~------- 65 (426)
T PRK07572 2 FDLIVRNANLPDGR----TGIDIGIAGGRIAAVEPGLQA-----EAAEEIDAAGRLVSPPFVDPHFHMDATLS------- 65 (426)
T ss_pred CcEEEECeEECCCC----eeEEEEEECCEEEEecCCCCC-----CcCceEeCCCCEEcccceehhhCcchhhc-------
Confidence 56789999998854 245899999999999975321 24579999999999999999999863210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCCC
Q 010613 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (506)
Q Consensus 125 ~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~ 204 (506)
.+. + ..
T Consensus 66 ~~~-------------------------------------~------~~------------------------------- 71 (426)
T PRK07572 66 YGL-------------------------------------P------RV------------------------------- 71 (426)
T ss_pred cCC-------------------------------------C------CC-------------------------------
Confidence 000 0 00
Q ss_pred CCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHH
Q 010613 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (506)
Q Consensus 205 ~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~ 284 (506)
...|.+.| ++.......+..+.++++...+.+++++++.|+|+++|+.. . +.. ....+
T Consensus 72 ---------------~~~g~l~e-~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d-~-~~~---~~~~~- 129 (426)
T PRK07572 72 ---------------NASGTLLE-GIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVD-V-CDP---RLLAV- 129 (426)
T ss_pred ---------------CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccc-c-CCC---cccHH-
Confidence 00111222 11112222345688999999999999999999999999752 1 001 11111
Q ss_pred HHHHHHHh--cCCCeeEEEEccCccch--hhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcc
Q 010613 285 DVYQWASY--SEKMKIRVCLFFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360 (506)
Q Consensus 285 ~~~~~l~~--~g~l~~Rv~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~ 360 (506)
+.+.++.. ...+.+-+..+.....+ ....+...+. ++ .|+.++ |. .|+.+..
T Consensus 130 ~a~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~~~~-------l~-~g~d~i--Gg---------~p~~~~~----- 185 (426)
T PRK07572 130 EALLEVRERVAPYLDLQLVAFPQDGVLRSPGAVDNLERA-------LD-MGVDVV--GG---------IPHFERT----- 185 (426)
T ss_pred HHHHHHHHHhhccceEEEEeccChhhccCccHHHHHHHH-------HH-cCCCEE--eC---------CCCCccc-----
Confidence 22222221 11122112111110000 0011111110 11 011111 11 0332110
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeec-cchHHHHHHHHHHHHHHhcCCCCCCceEeecccCCh-------hHHHHHHhC
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARFGDQ 432 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~-Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~-------~~i~r~a~l 432 (506)
...+.|+++.+++.|+++|+++++|+. ++..+...++.+.+...+.|..+ +..++||..+++ +++++|++.
T Consensus 186 ~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~ 264 (426)
T PRK07572 186 MADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEA 264 (426)
T ss_pred cchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHc
Confidence 113459999999999999999999994 45555666665555556778766 899999988776 569999999
Q ss_pred CCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccc
Q 010613 433 GIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLF 482 (506)
Q Consensus 433 gv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a 482 (506)
|+.+++||..+.+... . ..+.-..++..|+++++++||+|++| |++.
T Consensus 265 g~~vv~~P~~n~~l~~--~-~~~~~~~~g~~~v~~l~~~GV~v~lGtD~~~ 312 (426)
T PRK07572 265 GVNAIANPLINITLQG--R-HDTYPKRRGMTRVPELMAAGINVAFGHDCVM 312 (426)
T ss_pred CCeEEECchhhhhhcC--C-CCCCCCCCCCcCHHHHHHCCCcEEEecCCCC
Confidence 9999999976432110 0 00000124788999999999999999 9863
No 33
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.89 E-value=1.4e-21 Score=207.48 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=92.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHHH----HHHHhcCCCCCCceEeecccCChhHHHHHHhCCCE
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~e----~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~ 435 (506)
..++++.++++.+ ++++|+++++|+.+.. .+..+.+.+. +...+.|..+.|+.++||+++++++++++++.|+.
T Consensus 211 ~~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~ 289 (455)
T TIGR02022 211 RAVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAV 289 (455)
T ss_pred CcCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCe
Confidence 4679999999999 8899999999997432 2232222111 22456788899999999999999999999999999
Q ss_pred EEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhH
Q 010613 436 ASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYI 498 (506)
Q Consensus 436 ~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~ 498 (506)
+++||.++ + ++| ++.+|+++|+++|++|++| |+.. +.++|++|+.+
T Consensus 290 v~~~P~sn----~----~lg----~g~~pi~~l~~~Gv~v~lGTD~~~-----~~d~~~~m~~a 336 (455)
T TIGR02022 290 AGLCPTTE----A----NLG----DGIFPAVDFVAAGGRFGIGSDSHV-----VIDVAEELRQL 336 (455)
T ss_pred EEEChhhh----c----ccc----CCCCCHHHHHHCCCeEEEECCCCC-----CCCHHHHHHHH
Confidence 99999873 2 233 4789999999999999999 9632 45666666544
No 34
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.88 E-value=3e-21 Score=200.34 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
++.++++++++.|+++|+++++|+.+..... .++.+.+ .| +.+++||++++++++++|+++|+.+++||.+
T Consensus 194 ~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~----~~~~~~~-~g----~~~~~H~~~~~~~~l~~la~~g~~~~~~P~~ 264 (377)
T TIGR01224 194 FSVEQSRRILQAAQEAGLPVKLHAEELSNLG----GAELAAK-LG----AVSADHLEHASDAGIKALAEAGTVAVLLPGT 264 (377)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEecCCCCCC----HHHHHHH-cC----CCccHHHhcCCHHHHHHHHhcCCEEEECchH
Confidence 4678999999999999999999998754322 2222222 23 5679999999999999999999999999997
Q ss_pred HhhhhhcCccccccccccccccccchhccccccccc-cc
Q 010613 443 TFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DG 480 (506)
Q Consensus 443 ~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~ 480 (506)
+++ ++ .+.+|+++++++|++|++| |+
T Consensus 265 ~~~--------l~----~~~~p~~~l~~~Gv~v~lgTD~ 291 (377)
T TIGR01224 265 TFY--------LR----ETYPPARQLIDYGVPVALATDL 291 (377)
T ss_pred HHh--------cC----CcCccHHHHHHCCCCEEEECCC
Confidence 532 22 2578999999999999999 96
No 35
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.85 E-value=1e-19 Score=188.54 Aligned_cols=192 Identities=19% Similarity=0.156 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEc----cCccch--hh-
Q 010613 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLF----FPLETW--SS- 311 (506)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~----~~~~~~--~~- 311 (506)
.++++++......++.++++.|+|++.+... .+...+.. .+.+++++++.+++.+.+.+... ++.... ..
T Consensus 84 ~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~--~~~~~~~~-~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 160 (371)
T cd01296 84 AASEDELFASALRRLARMLRHGTTTVEVKSG--YGLDLETE-LKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY 160 (371)
T ss_pred hCCHHHHHHHHHHHHHHHHHCCceEEEeccc--CCCCHHHH-HHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence 4578889999999999999999999998421 11111111 12335556655555566554332 111010 01
Q ss_pred ----HHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeec
Q 010613 312 ----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI 387 (506)
Q Consensus 312 ----~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~ 387 (506)
..++.+.... .. ...++|++..+ ..++.+++++.++.|+++|+++++|+.
T Consensus 161 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~----------------------~~~~~~~~~~~~~~A~~~g~~v~~H~~ 214 (371)
T cd01296 161 IDLVIEEVLPAVAE--EN--LADFCDVFCEK----------------------GAFSLEQSRRILEAAKEAGLPVKIHAD 214 (371)
T ss_pred HHHHHHHHHHHHHH--hC--CCCEEEEeecC----------------------CccCHHHHHHHHHHHHHCCCeEEEEEc
Confidence 1122211000 01 12345543211 124689999999999999999999998
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccc
Q 010613 388 GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGP 467 (506)
Q Consensus 388 Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~ 467 (506)
+...... ++.+. +.| +.+++|++.++++++++++++|+.+++||.++++ ++ .+..|+++
T Consensus 215 e~~~~~~----~~~~~-~~g----~~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~--------l~----~~~~~~~~ 273 (371)
T cd01296 215 ELSNIGG----AELAA-ELG----ALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFS--------LR----ETYPPARK 273 (371)
T ss_pred CcCCCCH----HHHHH-HcC----CCeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHH--------hC----CCCCCHHH
Confidence 6532211 11111 223 4579999999999999999999999999987532 21 23689999
Q ss_pred hhccccccccc-cc
Q 010613 468 IHIIAVLVSIF-DG 480 (506)
Q Consensus 468 ~~~~Gv~V~lG-D~ 480 (506)
++++|+++++| |+
T Consensus 274 l~~~Gv~v~lgsD~ 287 (371)
T cd01296 274 LIDAGVPVALGTDF 287 (371)
T ss_pred HHHCCCcEEEecCC
Confidence 99999999999 96
No 36
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.85 E-value=3.2e-20 Score=190.09 Aligned_cols=131 Identities=22% Similarity=0.149 Sum_probs=98.1
Q ss_pred EceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCC
Q 010613 329 LGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGK 408 (506)
Q Consensus 329 ~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~ 408 (506)
.+.||+|+||.....+. ..+...+++++++++++.|+++|+++++|+.++..++.++++ |
T Consensus 134 ~~~iK~~~~g~~~~~~~-----------~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~--------G- 193 (342)
T cd01299 134 ADQIKIMATGGVLSPGD-----------PPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRA--------G- 193 (342)
T ss_pred CCEEEEeccCCcCCCCC-----------CCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------C-
Confidence 45689999997654331 124457899999999999999999999999998877766642 3
Q ss_pred CCCCceEeecccCChhHHHHHHhCCCEEEecchhHhhh--hhcCc-------cccccccccccccccchhccccccccc-
Q 010613 409 RDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTTFWQ--SIVNP-------LLISTDVWNFRYTIGPIHIIAVLVSIF- 478 (506)
Q Consensus 409 ~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~~~~--~~~~~-------~~~g~~~~~~~~pi~~~~~~Gv~V~lG- 478 (506)
..+|+|+..++++++++|+++|+.++.||.+.+.. ..... .++..++..+..|+++++++||+|++|
T Consensus 194 ---~~~i~H~~~~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GT 270 (342)
T cd01299 194 ---VDTIEHGFLIDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGT 270 (342)
T ss_pred ---CCEEeecCCCCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEec
Confidence 35899999999999999999999999999864311 00000 000001234568999999999999999
Q ss_pred cccc
Q 010613 479 DGLF 482 (506)
Q Consensus 479 D~~a 482 (506)
|++.
T Consensus 271 D~~~ 274 (342)
T cd01299 271 DAGF 274 (342)
T ss_pred CCCC
Confidence 9764
No 37
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.82 E-value=5.2e-18 Score=179.44 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeec--cchHHHHHHHHHHHHHHhcCCCCCCceEeecccCC-------hhHHHHHHhCCC
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAI--GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-------SGTAARFGDQGI 434 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~--Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~-------~~~i~r~a~lgv 434 (506)
+.+.+.++++.|+++|+++++|+. ++.+.. .++.+.+...+.|. ..+++++||..++ ++++++|++.|+
T Consensus 210 ~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~-~l~~~~~~~~~~G~-~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv 287 (438)
T PRK07583 210 LDAQLDRLFRLARERGLDLDLHVDETGDPASR-TLKAVAEAALRNGF-EGKVTCGHCCSLAVQPEEQAQATIALVAEAGI 287 (438)
T ss_pred HHHHHHHHHHHHHHhCCCcEEeECCCCCchHH-HHHHHHHHHHHhCC-CCCEEEEeccchhcCCHHHHHHHHHHHHHcCC
Confidence 568999999999999999999994 444433 24444444444565 4479999999987 478999999999
Q ss_pred EEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccc
Q 010613 435 VASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLF 482 (506)
Q Consensus 435 ~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a 482 (506)
.+++||.++++....... ...++++..|+++++++||+|++| |+..
T Consensus 288 ~vv~~P~~~~~l~~~~~~--~~p~~~~~~~v~~l~~aGV~valGtD~~~ 334 (438)
T PRK07583 288 AIVSLPMCNLYLQDRQPG--RTPRWRGVTLVHELKAAGIPVAVASDNCR 334 (438)
T ss_pred eEEECcchhhhhcCCCcC--CCCCCCCcchHHHHHHCCCeEEEEeCCCC
Confidence 999999986432110000 012345788999999999999999 9854
No 38
>PRK06846 putative deaminase; Validated
Probab=99.77 E-value=8.4e-17 Score=168.88 Aligned_cols=118 Identities=19% Similarity=0.084 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHHHHHHHhcCCCCCCceEeecccC---ChhHHH----HHHhCC
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL---ASGTAA----RFGDQG 433 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i---~~~~i~----r~a~lg 433 (506)
..++++++++++.|+++|+++++|+.+.. .....++.+-+...+.|..+ |..+.||..+ ++++++ ++++.|
T Consensus 202 ~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g 280 (410)
T PRK06846 202 GAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQWKG-KVTISHAFALGDLNEEEVEELAERLAAQG 280 (410)
T ss_pred cCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCCCC-CEEEEecchhhcCCHHHHHHHHHHHHHcC
Confidence 45789999999999999999999986422 12222233333344557656 8999999975 777755 799999
Q ss_pred CEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-ccccc--ccccCCCCCcchh
Q 010613 434 IVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC--YMLVTCRPRNNFS 496 (506)
Q Consensus 434 v~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~--~~~~~~~~~~~~~ 496 (506)
+.+++++. + .++.+|+++++++|++|++| |++.+ ++....|+|.+|.
T Consensus 281 ~~v~~~~~------------~----~~g~~p~~~l~~~Gv~v~lGtD~~~~~~~p~~~~d~~~~~~ 330 (410)
T PRK06846 281 ISITSTVP------------I----GRLHMPIPLLHDKGVKVSLGTDSVIDHWSPFGTGDMLEKAN 330 (410)
T ss_pred CeEEEeCC------------C----CCCCCCHHHHHhCCCeEEEecCCCCCCCcCCCCCCHHHHHH
Confidence 99986532 2 23689999999999999999 98742 3333444555544
No 39
>PLN02942 dihydropyrimidinase
Probab=99.77 E-value=6.2e-17 Score=173.20 Aligned_cols=279 Identities=17% Similarity=0.168 Sum_probs=163.7
Q ss_pred CcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccccccccc
Q 010613 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (506)
Q Consensus 43 ~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~ 122 (506)
++.|++|+|++|++++. ....+|+|+||+|++||+..+.. ...++||++|++|+|||||+|+|+.+...
T Consensus 3 ~~~~lli~~~~v~~~~~--~~~~~i~I~~g~I~~i~~~~~~~----~~~~~iD~~g~~v~PG~ID~H~H~~~~~~----- 71 (486)
T PLN02942 3 SSTKILIKGGTVVNAHH--QELADVYVEDGIIVAVAPNLKVP----DDVRVIDATGKFVMPGGIDPHTHLAMPFM----- 71 (486)
T ss_pred CCCcEEEECcEEEcCCC--CeEeEEEEECCEEEEEcCCCCCC----CCCeEEECCCCEEecCEeeeeeccCcccC-----
Confidence 35788999999999763 24569999999999998753211 25689999999999999999999863210
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCC
Q 010613 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (506)
Q Consensus 123 ~l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~ 202 (506)
+
T Consensus 72 -----------------------------------------------------------------------------~-- 72 (486)
T PLN02942 72 -----------------------------------------------------------------------------G-- 72 (486)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred CCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHH
Q 010613 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (506)
Q Consensus 203 ~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~ 282 (506)
....+ .+..+.+.+++.|||++.||.. +. . ....+
T Consensus 73 ------------------------------------~~~~e----d~~s~s~aAl~gGvTTv~D~~~--~~-~--~~~~~ 107 (486)
T PLN02942 73 ------------------------------------TETID----DFFSGQAAALAGGTTMHIDFVI--PV-N--GNLLA 107 (486)
T ss_pred ------------------------------------Ccccc----hHHHHHHHHHcCCCeEEEeCCC--CC-C--CCHHH
Confidence 00001 1222345568999999999852 11 1 11122
Q ss_pred HHHHHHHHHhcCCCeeEEEEccCccchh--hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcc
Q 010613 283 FADVYQWASYSEKMKIRVCLFFPLETWS--SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360 (506)
Q Consensus 283 ~~~~~~~l~~~g~l~~Rv~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~ 360 (506)
.++.++.... +..+.+........+. ...+....... ..+.++|+|++.. +.
T Consensus 108 ~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~e~~~l~~~-----~gv~~~k~~~~~~-------------------~~ 161 (486)
T PLN02942 108 GYEAYEKKAE--KSCMDYGFHMAITKWDDTVSRDMETLVKE-----KGINSFKFFMAYK-------------------GS 161 (486)
T ss_pred HHHHHHHHHh--hcCCCEEEEEEecCCcHhHHHHHHHHHHh-----CCCceEEEEEecC-------------------CC
Confidence 2233332222 2234433322211111 11222111011 1234578775211 11
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHH------------------------HHHHHHhcCCCCCCceEe
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM------------------------YKSVVVTTGKRDQRFRIE 416 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a------------------------~e~~~~~~g~~~~r~~i~ 416 (506)
..++.+.+.+.++.+++.|..+++|+....-++...+. ++++..-.+..+.|..+.
T Consensus 162 ~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~ 241 (486)
T PLN02942 162 LMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVV 241 (486)
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEE
Confidence 23578999999999999999999996432222221111 111111223346789999
Q ss_pred ecccCCh-hHHHHHHhCCCEEEecch--hHhhhhh-cCc--ccccccccccccccc---------chhccccccccc-cc
Q 010613 417 HAQHLAS-GTAARFGDQGIVASMQVW--TTFWQSI-VNP--LLISTDVWNFRYTIG---------PIHIIAVLVSIF-DG 480 (506)
Q Consensus 417 H~~~i~~-~~i~r~a~lgv~~s~~P~--~~~~~~~-~~~--~~~g~~~~~~~~pi~---------~~~~~Gv~V~lG-D~ 480 (506)
|+...+. ++|+++++.|+.++++|. +.++... +.. .+++. .+.-.+|++ ++++.|+.+++| |.
T Consensus 242 H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~-~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh 320 (486)
T PLN02942 242 HVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIAS-KYVMSPPIRPAGHGKALQAALSSGILQLVGTDH 320 (486)
T ss_pred ECCCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCc-ceEECCCCCCHHHHHHHHHHhcCCceEEEECCC
Confidence 9999999 999999999977766555 3322211 100 01111 112246875 899999999999 97
Q ss_pred ccc
Q 010613 481 LFC 483 (506)
Q Consensus 481 ~a~ 483 (506)
.+.
T Consensus 321 ~p~ 323 (486)
T PLN02942 321 CPF 323 (486)
T ss_pred CCC
Confidence 654
No 40
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.77 E-value=8.6e-18 Score=165.89 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEccCccch-hhHHHHHH
Q 010613 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETW-SSLADLIN 317 (506)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~~~~~~-~~~~~~~~ 317 (506)
.++++++....+.++.++++.|+|++.|+.. ........+.+.+. ++.+|....+..... +...++
T Consensus 44 ~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~--------~~~~~~~a~~~a~~---~~g~r~~~~~~~~~~~~~~~~~-- 110 (263)
T cd01305 44 QADDRELAEAMRKVLRDMRETGIGAFADFRE--------GGVEGIELLRRALG---KLPVPFEVILGRPTEPDDPEIL-- 110 (263)
T ss_pred hCCHHHHHHHHHHHHHHHHhcCCeEEEEccC--------cchhHHHHHHHHHH---hcCCCceEEeccCCcchHHHHH--
Confidence 4588888999999999999999999999752 01122212233333 345664222211111 111110
Q ss_pred hcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHH
Q 010613 318 KTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD 397 (506)
Q Consensus 318 ~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~ 397 (506)
+-..|+ ++ ...|+ .++ ++++++.|+++|+++++|+.++.... -..
T Consensus 111 ---------------~~~~~~-~~-----~~~~~----------~~~---l~~~~~~A~~~g~~v~~H~~e~~~~~-g~~ 155 (263)
T cd01305 111 ---------------LEVADG-LG-----LSSAN----------DVD---LEDILELLRRRGKLFAIHASETRESV-GMT 155 (263)
T ss_pred ---------------Hhhccc-cc-----CCCCC----------ccC---HHHHHHHHHHCCCeeEEecCCCCCCC-Cch
Confidence 001121 11 11122 233 99999999999999999998765410 011
Q ss_pred HHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhcccccccc
Q 010613 398 MYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSI 477 (506)
Q Consensus 398 a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~l 477 (506)
.++.+.+ .+ . .+++||++++++++++|++.|+.+++||.++.+ ++ .+.+|+++++++||+|++
T Consensus 156 ~i~~~~~-~~---~-~~i~H~~~l~~~~~~~la~~g~~v~~~P~sn~~--------l~----~g~~p~~~l~~~Gv~v~l 218 (263)
T cd01305 156 DIERALD-LE---P-DLLVHGTHLTDEDLELVRENGVPVVLCPRSNLY--------FG----VGIPPVAELLKLGIKVLL 218 (263)
T ss_pred hHHHHHh-CC---C-CEEEEcCCCCHHHHHHHHHcCCcEEEChhhHHH--------hC----CCCCCHHHHHHCCCcEEE
Confidence 1222221 12 2 368999999999999999999999999987432 22 367899999999999999
Q ss_pred c-cccccccccCCCCCcchhhHH
Q 010613 478 F-DGLFCYMLVTCRPRNNFSYIF 499 (506)
Q Consensus 478 G-D~~a~~~~~~~~~~~~~~~~~ 499 (506)
| |+++. ++.+++.+|+...
T Consensus 219 GtD~~~~---~~~~~~~~~~~~~ 238 (263)
T cd01305 219 GTDNVMV---NEPDMWAEMEFLA 238 (263)
T ss_pred ECCCCcc---CCCCHHHHHHHHH
Confidence 9 98653 3567777766544
No 41
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=99.75 E-value=2e-16 Score=168.31 Aligned_cols=61 Identities=33% Similarity=0.612 Sum_probs=50.1
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
++|+|++|++++. ....+|.|+||||.+||+.... .+..++||++|++|+|||||+|+|+.
T Consensus 1 ~li~n~~vv~~~~--~~~~~V~I~dg~I~~Ig~~~~~----~~~~~vIDa~G~~vlPGlID~H~H~~ 61 (454)
T TIGR02033 1 KLIRGGTVVNADD--VFQADVLIEGGKIVAVGRNLSP----PDAVEEIDATGKYVMPGGIDVHTHLE 61 (454)
T ss_pred CEEECcEEEcCCC--ceEEEEEEECCEEEEecCCCCC----CCCCcEEECCCCEEecCEecceeccC
Confidence 3789999999874 2457999999999999875321 12458999999999999999999985
No 42
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=9.8e-18 Score=173.79 Aligned_cols=116 Identities=21% Similarity=0.162 Sum_probs=88.3
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHh--CCC-EEE
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGD--QGI-VAS 437 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~--lgv-~~s 437 (506)
..++++++++++..|.++|+++.+|+.+..++..+++. + ...++|+.+++++.++.|++ .|+ .++
T Consensus 215 ~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~~~A~~~--------g----~~s~~H~~~ld~~~~~~~a~~~~g~~~~~ 282 (406)
T COG1228 215 GQFSPEEIRAVLAAALKAGIPVKAHAHGADGIKLAIRL--------G----AKSAEHGTLLDHETAALLAEKGAGTPVPV 282 (406)
T ss_pred cccCHHHHHHHHHHHHHCCCceEEEecccchHHHHHHh--------C----cceehhhhhcCHhHHHHHhhccCCCcccc
Confidence 46899999999999999999999999987755554433 2 35999999999999999999 776 466
Q ss_pred ecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHHHhhhhc
Q 010613 438 MQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIFTIFMKR 505 (506)
Q Consensus 438 ~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~~~~~~~ 505 (506)
+.|...+. +. .....|++.++++||+|++| |.+..+. ...+++.|..++|.
T Consensus 283 l~p~~~~~--------l~---e~~~~~~~~l~~~GV~vai~TD~~~~~~------~~~l~~~m~l~~~~ 334 (406)
T COG1228 283 LLPRTKFE--------LR---ELDYKPARKLIDAGVKVAIGTDHNPGTS------HGSLALEMALAVRL 334 (406)
T ss_pred ccchhhhh--------hh---cccchhHHHHHHCCCEEEEEcCCCCCch------hhHHHHHHHHHHHc
Confidence 66665321 11 12356799999999999999 8654211 66777777777764
No 43
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=4.4e-17 Score=162.56 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccch-HHHHHHHHHHH------HHHhcCCCCCCceEeecccCChhHHHHHHhCCC
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKS------VVVTTGKRDQRFRIEHAQHLASGTAARFGDQGI 434 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av~~~l~a~e~------~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv 434 (506)
.|+.+.+.+.-+.|+.+.+.+++|-.... .+..+.+-+.+ +....+.+.....++|++++++++++.|++.|.
T Consensus 216 ~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~ 295 (439)
T KOG3968|consen 216 SCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGC 295 (439)
T ss_pred CCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCC
Confidence 46778888888888889999999976543 34444443332 223456777788999999999999999999999
Q ss_pred EEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhH
Q 010613 435 VASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYI 498 (506)
Q Consensus 435 ~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~ 498 (506)
.+++||.+++ .+ .+|++|++++++.||.|++| |..+ ++.++.+++.
T Consensus 296 svshCP~Sn~--------~L----~sG~~~vr~lL~~~v~VgLGtDv~~------~s~l~a~r~A 342 (439)
T KOG3968|consen 296 SVSHCPTSNS--------IL----GSGIPRVRELLDIGVIVGLGTDVSG------CSILNALRQA 342 (439)
T ss_pred ceEECCcchh--------hh----ccCCccHHHHHhcCceEeecCCccc------cccHHHHHHH
Confidence 9999999853 23 35899999999999999999 8643 4445554443
No 44
>PRK08323 phenylhydantoinase; Validated
Probab=99.73 E-value=4.3e-16 Score=166.02 Aligned_cols=59 Identities=34% Similarity=0.660 Sum_probs=50.5
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
+|++|+|++|++++. ....+|.|+||||.+||+. +..++||+.|++|+|||||+|+|+.
T Consensus 1 ~d~li~n~~v~~~~~--~~~~~v~I~~g~I~~i~~~--------~~~~viD~~g~~v~PGlID~H~H~~ 59 (459)
T PRK08323 1 MSTLIKNGTVVTADD--TYKADVLIEDGKIAAIGAN--------LGDEVIDATGKYVMPGGIDPHTHME 59 (459)
T ss_pred CcEEEECCEEEcCCC--ceEEEEEEECCEEEEEecC--------CCceEEECCCCEEeccEEeeeeccc
Confidence 468999999999763 3457899999999999864 2458999999999999999999974
No 45
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.72 E-value=5.4e-16 Score=161.12 Aligned_cols=64 Identities=31% Similarity=0.552 Sum_probs=52.5
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
++++|+|++|++.........+|.|+||+|.+|++... .+..++||++|++|+|||||+|+|+.
T Consensus 3 ~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~-----~~~~~viD~~g~~v~PGliD~H~H~~ 66 (379)
T PRK12394 3 NDILITNGHIIDPARNINEINNLRIINDIIVDADKYPV-----ASETRIIHADGCIVTPGLIDYHAHVF 66 (379)
T ss_pred ccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCC-----CCCCeEEECCCCEEECCEEEeeecCC
Confidence 57899999999876444455689999999999987421 13458999999999999999999985
No 46
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=99.71 E-value=1.6e-15 Score=161.15 Aligned_cols=61 Identities=38% Similarity=0.697 Sum_probs=49.8
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
++|+|++|++++. ....+|+|+||||.+||+.... ..+.++||++|++|+|||||+|+|+.
T Consensus 1 lli~~~~v~~~~~--~~~~~i~I~~g~I~~ig~~~~~----~~~~~viD~~g~~vlPGlID~H~H~~ 61 (447)
T cd01314 1 LIIKNGTIVTADG--SFKADILIEDGKIVAIGPNLEA----PGGVEVIDATGKYVLPGGIDPHTHLE 61 (447)
T ss_pred CEEECCEEECCCC--ceeeeEEEECCEEEEeeCCCCC----CCCceEEECCCCEEecCEEecccccc
Confidence 3789999999764 3457999999999999875321 12468999999999999999999985
No 47
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.70 E-value=5.3e-16 Score=160.99 Aligned_cols=281 Identities=15% Similarity=0.100 Sum_probs=160.1
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~ 123 (506)
+++++|+|++|++.++ ....+|.|+||||++||+... +..++||++|++|+|||||+|+|......
T Consensus 1 ~~~~~i~~~~v~~~~~--~~~~~i~i~~g~I~~i~~~~~------~~~~~iDa~g~~v~PG~ID~H~h~~~~~~------ 66 (383)
T PRK15446 1 MMEMILSNARLVLPDE--VVDGSLLIEDGRIAAIDPGAS------ALPGAIDAEGDYLLPGLVDLHTDNLEKHL------ 66 (383)
T ss_pred CccEEEECcEEEcCCC--ceeeeEEEECCEEEEecCCCC------CCCceEeCCCCEEEeCeEEcccCCccccc------
Confidence 3679999999999764 236799999999999997432 13478999999999999999997541100
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCeEEEecCCCCCcCCCCCChhhhhhhCCCCeEEEEecCCchhhhcHHHHHHcCCCC
Q 010613 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (506)
Q Consensus 124 l~~~~s~~~~~~~l~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~Ld~~~~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~ 203 (506)
.|
T Consensus 67 ----------------------------------------~p-------------------------------------- 68 (383)
T PRK15446 67 ----------------------------------------AP-------------------------------------- 68 (383)
T ss_pred ----------------------------------------CC--------------------------------------
Confidence 00
Q ss_pred CCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCC--C--CCcccCc
Q 010613 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY--P--GESVQLS 279 (506)
Q Consensus 204 ~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~--~--g~~~~~~ 279 (506)
.++. ..+ ..+.+....+.+++.|+||+.|+.... + +......
T Consensus 69 -----~~~~--------------------------~~~---~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~ 114 (383)
T PRK15446 69 -----RPGV--------------------------DWP---ADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDL 114 (383)
T ss_pred -----CCCC--------------------------ccc---hHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHH
Confidence 0000 000 012344455778899999999974211 1 0000000
Q ss_pred hHHHHHHHHHHHhcCCCeeEEEEccCcc--chhhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCC----
Q 010613 280 WEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYAD---- 353 (506)
Q Consensus 280 ~~~~~~~~~~l~~~g~l~~Rv~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d---- 353 (506)
...+.+.++....++++-++..+..... ..+.+.++.+... -.+.+.|.|+|.+++...--...+|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~~------~g~~~~k~fm~~~p~~~~~~~~~~~~~~~~~ 188 (383)
T PRK15446 115 ARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALLA------HPRVDLVSLMDHTPGQRQFRDLEKYREYYAG 188 (383)
T ss_pred HHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHhc------CCCcCEEEEeCCCCccccccCHHHHHHHHHh
Confidence 0112122332223355444443322221 1122333322110 123457999998754210000001100
Q ss_pred CCC-------------CCcccCCCHHHHHHHHHHHHHCCCeEEEee-ccchHHHHHHHHHHHHHHhcCCCCCCceEeecc
Q 010613 354 EPH-------------NYGLQVMELESLLSMTMASDKSGLQVAIHA-IGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ 419 (506)
Q Consensus 354 ~~~-------------~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa-~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~ 419 (506)
.-+ ..-...++.++++++++.|+++|+++..|+ .+...++. +.+ .|. ..++|
T Consensus 189 ~~g~~~~e~~~~~~~~~~~~~~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~-------a~~-~Gv----~~~e~-- 254 (383)
T PRK15446 189 KYGLSDEEFDAFVEERIALSARYAPPNRRAIAALARARGIPLASHDDDTPEHVAE-------AHA-LGV----AIAEF-- 254 (383)
T ss_pred hcCCCHHHHHHHHHHHHHhHhhcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHH-------HHH-cCC----ceeeC--
Confidence 000 001234688999999999999999999998 45443332 222 233 24565
Q ss_pred cCChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchhccccccccc-cc
Q 010613 420 HLASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DG 480 (506)
Q Consensus 420 ~i~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~ 480 (506)
..+.+.++++++.|+.+.+++... + +-+. ..+..++.+++++|+.+++| |.
T Consensus 255 ~~~~e~~~~~~~~g~~v~~~~p~~----~----r~~~--~~~~~~~~~~~~~Gv~~~lgSD~ 306 (383)
T PRK15446 255 PTTLEAARAARALGMSVLMGAPNV----V----RGGS--HSGNVSALDLAAAGLLDILSSDY 306 (383)
T ss_pred CCcHHHHHHHHHCCCEEEeCCccc----c----cCCc--ccchHhHHHHHHCCCcEEEEcCC
Confidence 457888999999999987754311 1 1110 12457888999999999999 85
No 48
>PRK09357 pyrC dihydroorotase; Validated
Probab=99.69 E-value=3.1e-15 Score=157.76 Aligned_cols=63 Identities=30% Similarity=0.583 Sum_probs=51.5
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|+++|+|++|++++ ......+|.|+||+|.+||+... .+..++||++|++|+|||||+|+|+.
T Consensus 1 ~~~~i~~~~v~~~~-~~~~~~~I~I~dg~I~~i~~~~~-----~~~~~~iD~~g~~v~PG~ID~H~H~~ 63 (423)
T PRK09357 1 MMILIKNGRVIDPK-GLDEVADVLIDDGKIAAIGENIE-----AEGAEVIDATGLVVAPGLVDLHVHLR 63 (423)
T ss_pred CcEEEEeEEEECCC-CCcceeeEEEECCEEEEeeCCCC-----CCCCeEEECCCCEEeCCEEecccccC
Confidence 35799999999875 34456799999999999986411 13568999999999999999999964
No 49
>PRK06886 hypothetical protein; Validated
Probab=99.65 E-value=6.2e-15 Score=148.81 Aligned_cols=227 Identities=14% Similarity=0.079 Sum_probs=142.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHh--cCCCeeEEEEccCccch--hhH
Q 010613 237 IPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASY--SEKMKIRVCLFFPLETW--SSL 312 (506)
Q Consensus 237 ~p~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~--~g~l~~Rv~~~~~~~~~--~~~ 312 (506)
-+.++.+++++...++++.+.++|+|.+.-.-...+. ..-..| +++.++.+ ++.+.+.++.++ .+.+ ...
T Consensus 59 k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~-~~l~~~----~a~~~~r~~~~~~idlq~vafP-q~g~~~~~~ 132 (329)
T PRK06886 59 KRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPI-CEDRAI----IAAHKAREVYKHDIILKFANQT-LKGVIEPTA 132 (329)
T ss_pred hccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCC-ccccHH----HHHHHHHHHhcCcceEEEEecC-hhhccCccH
Confidence 3466889999999999999999999999865321110 111233 33333322 466777776543 2211 111
Q ss_pred HHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-H
Q 010613 313 ADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-A 391 (506)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-a 391 (506)
.++..+. +++ +| .+++. ||.+.. ....+.+.++.+++.|+++|+++++|+.+.. .
T Consensus 133 ~~l~~~a------------l~~-ad-vvGGi------P~~~~~----~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~ 188 (329)
T PRK06886 133 KKWFDIG------------SEM-VD-MIGGL------PYRDEL----DYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTP 188 (329)
T ss_pred HHHHHHH------------HHh-CC-EEeCc------cCCcCC----CCCCCHHHHHHHHHHHHHcCCCeEEeECCCCch
Confidence 1222111 111 11 11211 665321 1235789999999999999999999997521 2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEeecccCChhH-------HHHHHhCCCEEEecchhHhhhhhcCcccccccccccccc
Q 010613 392 NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT-------AARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYT 464 (506)
Q Consensus 392 v~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~-------i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~p 464 (506)
....++.+.+.-.+.|..+ |+.+.||+.+++.+ ++++++.|+.+++||..+.+.+... ... -..++++|
T Consensus 189 ~~~~le~l~~~~~~~Gl~g-rV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~~P~snl~l~~~~-~~~--p~~rGv~p 264 (329)
T PRK06886 189 KEKETEQLCDKTIEHGMQG-RVVAIHGISIGAHSKEYRYRLYQKMREADMMVIACPMAWIDSNRKE-DLM--PFHNALTP 264 (329)
T ss_pred hHHHHHHHHHHHHHcCCCC-CEEEEEeccccCcChhhHHHHHHHHHHcCCeEEECchhhhhhcccc-ccC--cCCCCCCC
Confidence 2333444444344678755 89999999999876 9999999999999998742111100 001 12468999
Q ss_pred ccchhccccccccc-ccccc--ccccCCCCCcchhh
Q 010613 465 IGPIHIIAVLVSIF-DGLFC--YMLVTCRPRNNFSY 497 (506)
Q Consensus 465 i~~~~~~Gv~V~lG-D~~a~--~~~~~~~~~~~~~~ 497 (506)
+++|+++||+|++| |+..+ +++++.|||+.+..
T Consensus 265 v~eL~~aGV~V~lGtDnv~D~~~p~g~~Dmle~~~l 300 (329)
T PRK06886 265 ADEMIPEGITVALGTDNICDYMVPLCEGDMWQELSL 300 (329)
T ss_pred HHHHHHCCCeEEEecCCCcccCCCCCCCCHHHHHHH
Confidence 99999999999999 99865 34555555555544
No 50
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=99.62 E-value=1.5e-14 Score=149.83 Aligned_cols=93 Identities=12% Similarity=-0.016 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeec-cchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEec-c
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQ-V 440 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~-Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~-P 440 (506)
++.+.++++++.|++.|++++.|+. +... ++++.+. |. ..++|. ++.+..+.+++.|+.++.+ |
T Consensus 206 ~~~e~i~~~v~~A~~~G~~v~sH~~~~~e~-------i~~a~~~-Gv----~~~E~~--~t~e~a~~~~~~G~~v~~~~p 271 (376)
T TIGR02318 206 YGLANRSEIAALARARGIPLASHDDDTPEH-------VAEAHDL-GV----TISEFP--TTLEAAKEARSLGMQILMGAP 271 (376)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEecCCCHHH-------HHHHHHC-CC----ChhccC--CCHHHHHHHHHcCCeEEECCc
Confidence 3679999999999999999999984 3222 2233222 33 355665 7899999999999998766 3
Q ss_pred hhHhhhhhcCccccccccccccccccchhccccccccc-cc
Q 010613 441 WTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DG 480 (506)
Q Consensus 441 ~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~ 480 (506)
+.. +-+. ..+..++.++++.|+..+++ |.
T Consensus 272 ~~~---------r~~~--~~~~~~l~~~~~~G~~~~l~SD~ 301 (376)
T TIGR02318 272 NIV---------RGGS--HSGNLSARELAHEGLLDVLASDY 301 (376)
T ss_pred ccc---------cccc--ccchHHHHHHHHCCCcEEEEcCC
Confidence 211 1110 12456788999999999999 86
No 51
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=99.61 E-value=1.9e-14 Score=151.36 Aligned_cols=64 Identities=36% Similarity=0.706 Sum_probs=53.4
Q ss_pred cEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccc
Q 010613 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (506)
Q Consensus 46 ~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~ 114 (506)
|++|+|++|+++.+......+|.|+||||++||+..+ ....++||++|++|+|||||+|+|+..
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~-----~~~~~~iD~~G~~v~PG~iD~H~H~~~ 64 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS-----TSAREVIDAAGLVVAPGFIDVHTHYDG 64 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCC-----CCCCeEEECCCCEEccCEeeeeecCCc
Confidence 5789999999987544566799999999999986432 135689999999999999999999864
No 52
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.60 E-value=5.6e-14 Score=145.58 Aligned_cols=66 Identities=24% Similarity=0.462 Sum_probs=50.7
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~ 114 (506)
++|+|++||+++. ....+|+|+||||++||+..+.........+++|++|++|+|||||+|+|+.+
T Consensus 2 ~li~n~~v~~~~~--~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~ 67 (389)
T TIGR01975 2 TLLKGAEVYAPEY--IGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIG 67 (389)
T ss_pred EEEECcEEEcCCc--CcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhcccc
Confidence 4899999999864 24579999999999999875432111123345667999999999999999864
No 53
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.59 E-value=9.8e-14 Score=147.43 Aligned_cols=69 Identities=36% Similarity=0.559 Sum_probs=53.9
Q ss_pred CcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhh--h----hhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAV--Q----QLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 43 ~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~--~----~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
..+|++|+|++|++.. .....+|.|+||||++||+.... . ...++.+++||++|++|+|||||+|+|+.
T Consensus 65 ~~mDlVI~Na~Vvd~~--gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~ 139 (568)
T PRK13207 65 GAVDTVITNALILDHW--GIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFI 139 (568)
T ss_pred ccCCEEEECeEEECCC--CeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCc
Confidence 4579999999999864 23567999999999999964211 0 01124679999999999999999999964
No 54
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=99.58 E-value=3.6e-13 Score=142.84 Aligned_cols=61 Identities=26% Similarity=0.563 Sum_probs=51.1
Q ss_pred cEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 46 ~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|++|+|++|+++++. ...+|.|+||+|++|++... .+..++||++|++|+|||||+|+|+.
T Consensus 1 dl~i~~~~v~~~~~~--~~~~v~i~dg~I~~i~~~~~-----~~~~~~id~~g~~v~PG~ID~H~H~~ 61 (443)
T TIGR03178 1 DLIIRGGRVILPNGE--READVGVKGGKIAAIGPDIL-----GPAAKIIDAGGLVVFPGVVDTHVHIN 61 (443)
T ss_pred CEEEECcEEECCCCc--eEEEEEEECCEEEEeeCCCC-----CCCCeEEECCCCEEeccEeccccccC
Confidence 578999999997642 45799999999999987521 13568999999999999999999975
No 55
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=99.58 E-value=7.2e-13 Score=140.78 Aligned_cols=62 Identities=39% Similarity=0.676 Sum_probs=51.6
Q ss_pred cEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 46 ~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|++|+|++|++++. ....+|+|+||||++||+.... .+..++||++|++|+|||||+|+|+.
T Consensus 1 dl~i~~~~v~~~~~--~~~~~v~I~~g~I~~i~~~~~~----~~~~~~iDa~G~~v~PG~ID~H~H~~ 62 (447)
T cd01315 1 DLVIKNGRVVTPDG--VREADIAVKGGKIAAIGPDIAN----TEAEEVIDAGGLVVMPGLIDTHVHIN 62 (447)
T ss_pred CEEEECCEEECCCC--ceEeEEEEECCEEEEEeCCCCC----CCCCeEEECCCCEEeccEeeceeccC
Confidence 67999999999753 3457999999999999975321 13578999999999999999999974
No 56
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.57 E-value=1.3e-13 Score=143.82 Aligned_cols=66 Identities=29% Similarity=0.593 Sum_probs=52.6
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|+++|+|++|+|++. ....+|+|+||+|++||+..+... ..+..++||++|++|+|||||+|+|+.
T Consensus 1 ~~~~i~~~~v~~~~~--~~~~~i~i~~g~I~~v~~~~~~~~-~~~~~~~id~~g~~v~PG~id~H~H~~ 66 (388)
T PRK10657 1 MFTLLKNAHVYAPED--LGKKDILIAGGKIIAIADNINIPD-IVPDIEVIDASGKILVPGFIDQHVHII 66 (388)
T ss_pred CeEEEEccEEECCCC--CcceEEEEECCEEEEecCCccccc-cCCCCeEEECCCCEEcccceeeeeCcc
Confidence 468999999999863 345799999999999987543211 113568999999999999999999985
No 57
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=99.56 E-value=3.2e-13 Score=143.86 Aligned_cols=69 Identities=25% Similarity=0.429 Sum_probs=53.8
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhh--h------hhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ--Q------LAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~--~------~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
..|++|+|++|+++... ....+|.|+||||++||+..... . ..++.+++||++|++|+|||||+|+|+.
T Consensus 67 ~~DlVI~Ng~ViD~~~g-i~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~ 143 (572)
T PRK13309 67 VLDLVITNVTIVDARLG-VIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLI 143 (572)
T ss_pred cCCEEEECeEEEcCCCC-EEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccC
Confidence 56899999999986533 35679999999999999642110 0 0123579999999999999999999964
No 58
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.56 E-value=2.6e-13 Score=143.91 Aligned_cols=69 Identities=30% Similarity=0.556 Sum_probs=54.0
Q ss_pred CcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchh--hh------hhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA--VQ------QLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 43 ~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~--~~------~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
...|++|+|++|++..+ ....+|.|+||||++||+... .. ...++.+++||++|++|+|||||+|+|+.
T Consensus 69 ~~~DlVI~Na~IiD~~g--i~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~ 145 (573)
T PRK13206 69 GAPDTVITGAVILDHWG--IVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFI 145 (573)
T ss_pred CCCCEEEECeEEECCCC--eEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccC
Confidence 35689999999998553 356799999999999997421 10 01124579999999999999999999974
No 59
>PRK06189 allantoinase; Provisional
Probab=99.55 E-value=1.5e-12 Score=138.29 Aligned_cols=63 Identities=30% Similarity=0.612 Sum_probs=52.4
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
++|++|+|++|++++. ....+|.|+||+|.+||+..+ .+..++||++|++|+|||||+|+|+.
T Consensus 2 ~~~~~i~~~~v~~~~~--~~~~~v~i~~G~I~~i~~~~~-----~~~~~~iD~~g~~vlPG~ID~H~H~~ 64 (451)
T PRK06189 2 MYDLIIRGGKVVTPEG--VYRADIGIKNGKIAEIAPEIS-----SPAREIIDADGLYVFPGMIDVHVHFN 64 (451)
T ss_pred CccEEEECCEEEcCCC--cEEEEEEEECCEEEEecCCCC-----CCCCeEEECCCCEEecCEEEeeeccC
Confidence 3688999999998764 346799999999999986532 13568999999999999999999974
No 60
>PRK09236 dihydroorotase; Reviewed
Probab=99.53 E-value=5e-13 Score=141.75 Aligned_cols=65 Identities=26% Similarity=0.558 Sum_probs=51.9
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~ 114 (506)
|.+++|+|++|++.+. ....+|.|+||+|.+|++.... .+..++||++|++|+|||||+|+|+..
T Consensus 1 ~~~~~i~~~~v~~~~~--~~~~~i~i~~g~I~~i~~~~~~----~~~~~~id~~g~~v~PG~ID~HvH~~~ 65 (444)
T PRK09236 1 MKRILIKNARIVNEGK--IFEGDVLIENGRIAKIASSISA----KSADTVIDAAGRYLLPGMIDDQVHFRE 65 (444)
T ss_pred CccEEEECCEEEcCCC--ceEeEEEEECCEEEEecCCCCC----CCCCeEEECCCCEECCCEEEccccccc
Confidence 3568999999998642 3457899999999999864211 135689999999999999999999753
No 61
>PLN02795 allantoinase
Probab=99.50 E-value=6.5e-12 Score=134.91 Aligned_cols=84 Identities=25% Similarity=0.407 Sum_probs=60.3
Q ss_pred hhhhccCccccccccCC----CcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCee
Q 010613 26 FYLLKLTPATTTTTTTN----LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV 101 (506)
Q Consensus 26 ~~~~~~~~~~~~~~~~~----~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v 101 (506)
|.+||-.+.-+ |..+. .+.|++|+|++|++.+. ....+|.|+||+|.+||+..+... ..+..+++|++|++|
T Consensus 22 ~~~~~~~~~~~-~~~~~~~~~~~~~~vi~~~~vv~~~~--~~~~~v~i~dG~I~~I~~~~~~~~-~~~~~~~ida~G~~v 97 (505)
T PLN02795 22 FFFLFAPALPL-QGRDRCSLLPWPHFVLYSKRVVTPAG--VIPGAVEVEGGRIVSVTKEEEAPK-SQKKPHVLDYGNAVV 97 (505)
T ss_pred HHHHhcccccc-ccccccccccccceEEECCEEEECCC--eEEEEEEEECCEEEEecCcccccc-ccCCCEEEECCCCEE
Confidence 45555444444 43332 24599999999999753 345799999999999997532110 012468999999999
Q ss_pred eccccccccccc
Q 010613 102 VPGFIDSHVHFI 113 (506)
Q Consensus 102 ~PGfiD~H~H~~ 113 (506)
+|||||+|+|+.
T Consensus 98 ~PG~ID~H~H~~ 109 (505)
T PLN02795 98 MPGLIDVHVHLN 109 (505)
T ss_pred ecCEEecccCcC
Confidence 999999999974
No 62
>PRK07627 dihydroorotase; Provisional
Probab=99.47 E-value=6.5e-12 Score=132.18 Aligned_cols=66 Identities=15% Similarity=0.331 Sum_probs=53.7
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~ 114 (506)
||++|+|++|+++........+|+|+||||++||+.... .++.++||++|++|+|||||+|+|+..
T Consensus 1 m~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~----~~~~~~iDa~g~~vlPG~iD~H~H~~~ 66 (425)
T PRK07627 1 MKIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAG----FNADKTIDASGLIVCPGLVDLSARLRE 66 (425)
T ss_pred CeEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcC----CCCCeEEECCCCEEeccEEeccccccC
Confidence 478999999998765444567999999999999874211 135789999999999999999999853
No 63
>PRK13404 dihydropyrimidinase; Provisional
Probab=99.47 E-value=6.2e-12 Score=134.36 Aligned_cols=61 Identities=34% Similarity=0.647 Sum_probs=51.5
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
+|++|+|++|++.+. ....+|.|+||+|.+|++.. + ...++||++|++|+|||||+|+|+.
T Consensus 4 ~d~~i~~~~v~~~~~--~~~~~i~I~dg~I~~i~~~~--~----~~~~~iD~~G~~v~PG~ID~H~H~~ 64 (477)
T PRK13404 4 FDLVIRGGTVVTATD--TFQADIGIRGGRIAALGEGL--G----PGAREIDATGRLVLPGGVDSHCHID 64 (477)
T ss_pred CcEEEECCEEEcCCC--ceEEEEEEECCEEEEecCCC--C----CCCeEEECCCCEEecCEEEeEEcCC
Confidence 578999999999764 34579999999999998642 1 3568999999999999999999985
No 64
>PRK02382 dihydroorotase; Provisional
Probab=99.46 E-value=1.8e-11 Score=129.89 Aligned_cols=64 Identities=28% Similarity=0.543 Sum_probs=51.6
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|.|++|+|++|++.+. ....+|.|+||||++|++.... .+..++||++|++|+|||||+|+|+.
T Consensus 1 ~~dl~i~n~~v~~~~~--~~~~~v~I~dg~I~~i~~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~ 64 (443)
T PRK02382 1 MRDALLKDGRVYYNNS--LQPRDVRIDGGKITAVGKDLDG----SSSEEVIDARGMLLLPGGIDVHVHFR 64 (443)
T ss_pred CceEEEECCEEEeCCC--ceEEEEEEECCEEEEecCCCCC----CCCCeEEECCCCEEcCCEeeeeeecc
Confidence 4688999999998542 3467999999999999854221 13468999999999999999999974
No 65
>PRK09237 dihydroorotase; Provisional
Probab=99.45 E-value=2.7e-12 Score=133.52 Aligned_cols=63 Identities=29% Similarity=0.480 Sum_probs=52.1
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
++|+|++|+++........+|+|+||||++|++..+.. +..++||++|++|+|||||+|+|+.
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~----~~~~~iD~~g~~v~PG~iD~H~H~~ 63 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGS----QAKKVIDLSGLYVSPGWIDLHVHVY 63 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCC----CCCeEEECCCCEEecCEEEeeecCC
Confidence 37899999997655455679999999999998753321 3568999999999999999999975
No 66
>PRK07575 dihydroorotase; Provisional
Probab=99.44 E-value=2.5e-12 Score=136.12 Aligned_cols=65 Identities=25% Similarity=0.474 Sum_probs=52.3
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
+++++|+|++|++.++ .....+|.|+||||.+||+..+. ....++||++|++|+|||||+|+|+.
T Consensus 2 ~~~~~i~~~~i~~~~~-~~~~~~I~I~dg~I~~ig~~~~~----~~~~~vid~~g~~v~PG~ID~H~H~~ 66 (438)
T PRK07575 2 MMSLLIRNARILLPSG-ELLLGDVLVEDGKIVAIAPEISA----TAVDTVIDAEGLTLLPGVIDPQVHFR 66 (438)
T ss_pred cceEEEECCEEECCCC-CEEeeeEEEECCEEEEecCCCCC----CCCCeEEECCCCEEcccEEEeeeccC
Confidence 4678999999998753 33567999999999999875321 11358999999999999999999964
No 67
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.42 E-value=1.3e-11 Score=131.48 Aligned_cols=68 Identities=35% Similarity=0.610 Sum_probs=53.8
Q ss_pred CcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhh--h----hhcCCCeEEEcCCCeeecccccccccc
Q 010613 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ--Q----LAADGTNVLNLQGKVVVPGFIDSHVHF 112 (506)
Q Consensus 43 ~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~--~----~~~~~~~viD~~g~~v~PGfiD~H~H~ 112 (506)
..+|++|+|++|++..+ ....+|.|+||||++||+..+.. . ..++.+++||++|++|+|||||+|+|+
T Consensus 64 ~~MDlVIkNg~VID~~g--i~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~ 137 (567)
T TIGR01792 64 GVLDLVITNALILDWTG--IYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHY 137 (567)
T ss_pred ccCcEEEECeEEECCCC--eEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCC
Confidence 46789999999998542 45679999999999999753211 0 012457999999999999999999997
No 68
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=99.41 E-value=6.3e-12 Score=127.94 Aligned_cols=212 Identities=14% Similarity=0.084 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCC--cccCchHHHH----HHHHHHHhcCCCeeEEEEccCcc---chh
Q 010613 240 VSVDERREALLRASNLALSRGVTTVVDFGRYYPGE--SVQLSWEDFA----DVYQWASYSEKMKIRVCLFFPLE---TWS 310 (506)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~--~~~~~~~~~~----~~~~~l~~~g~l~~Rv~~~~~~~---~~~ 310 (506)
.+++++....+.++.++++.||| ..|+.+. |.. ....++++.. +++++..+ ++++|+.+.+... ..+
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt-~~E~~~~-p~~~~~~~~~~~~~~~~~~~ai~~~~~--~~gi~~~l~~~~~~~~~~~ 141 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVV-YAEIRFS-PQLHTRRGLSFDEVVEAVLRGLDEAEA--EFGIKARLILCGLRHLSPE 141 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCE-EEEEEeC-chhhccCCCCHHHHHHHHHHHHHHHHH--hcCCeEEEEEEecCCCCHH
Confidence 57899999999999999999998 5665421 100 0011223322 33333333 4566665433211 112
Q ss_pred hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch
Q 010613 311 SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR 390 (506)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~ 390 (506)
...+..+...++..+. +.|+-+. |. ....+.+++.++++.|+++|+++++|+.++.
T Consensus 142 ~~~~~~~~~~~~~~~~--vvg~~l~--~~--------------------~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~ 197 (325)
T cd01320 142 SAQETLELALKYRDKG--VVGFDLA--GD--------------------EVGFPPEKFVRAFQRAREAGLRLTAHAGEAG 197 (325)
T ss_pred HHHHHHHHHHhccCCC--EEEeecC--CC--------------------CCCCCHHHHHHHHHHHHHCCCceEEeCCCCC
Confidence 2333332211111111 1111100 00 0123788999999999999999999998876
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEeecccC--ChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccch
Q 010613 391 ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPI 468 (506)
Q Consensus 391 av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i--~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~ 468 (506)
+.+.+.++++.. |. .++.||..+ +++++++|++.|+.+++||..+. .++........|++++
T Consensus 198 ~~~~~~~a~~~~----g~----~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~sn~--------~l~~~~~~~~~p~~~l 261 (325)
T cd01320 198 GPESVRDALDLL----GA----ERIGHGIRAIEDPELVKRLAERNIPLEVCPTSNV--------QTGAVKSLAEHPLREL 261 (325)
T ss_pred CHHHHHHHHHHc----CC----cccchhhccCccHHHHHHHHHcCCeEEECCCccc--------cccccCCcccChHHHH
Confidence 555555555433 32 379999999 46789999999999999998642 1222112246899999
Q ss_pred hccccccccc-cccccccccCCCCCcchhhH
Q 010613 469 HIIAVLVSIF-DGLFCYMLVTCRPRNNFSYI 498 (506)
Q Consensus 469 ~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~ 498 (506)
+++||+|++| |+++.+ ..+.+.++..+
T Consensus 262 ~~~Gv~v~lgTD~~~~~---~~~~~~e~~~~ 289 (325)
T cd01320 262 LDAGVKVTINTDDPTVF---GTYLTDEYELL 289 (325)
T ss_pred HHCCCEEEECCCCCccc---CCCHHHHHHHH
Confidence 9999999999 987543 23444444443
No 69
>PRK09059 dihydroorotase; Validated
Probab=99.40 E-value=3.1e-11 Score=127.21 Aligned_cols=69 Identities=26% Similarity=0.432 Sum_probs=54.0
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
+.+++|+|++|+++++......+|+|+||||.+||+...... .....++||++|++|+|||||+|+|+.
T Consensus 2 ~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~-~~~~~~viDa~G~~v~PG~ID~HvH~~ 70 (429)
T PRK09059 2 MRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQG-APEGAEIVDCAGKAVAPGLVDARVFVG 70 (429)
T ss_pred CcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCcccccc-CCCCCeEEECCCCEEeccEEecccccC
Confidence 467899999999987544346799999999999986421110 113568999999999999999999984
No 70
>PRK07369 dihydroorotase; Provisional
Probab=99.39 E-value=7.2e-11 Score=124.01 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=54.0
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|.+++|+|++|+++.+......+|.|+||+|.+|++.... .....++||++|++|+|||||.|+|+.
T Consensus 1 ~~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~---~~~~~~~iDa~G~~vlPG~ID~H~H~~ 67 (418)
T PRK07369 1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDP---IPPDTQIIDASGLILGPGLVDLYSHSG 67 (418)
T ss_pred CCCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCccc---CCCCCEEEECCCCEEecCEEecccccC
Confidence 4578999999998654445667999999999999864321 013578999999999999999999975
No 71
>PRK09060 dihydroorotase; Validated
Probab=99.39 E-value=4.7e-11 Score=126.57 Aligned_cols=63 Identities=35% Similarity=0.648 Sum_probs=51.9
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
.+|++|+|++|++.+.. ...+|.|+||+|.+|++... .+..++||++|++|+|||||+|+|+.
T Consensus 4 ~~d~~i~~~~v~~~~~~--~~~~i~i~~g~I~~i~~~~~-----~~~~~~iD~~G~~v~PG~ID~HvH~~ 66 (444)
T PRK09060 4 TFDLILKGGTVVNPDGE--GRADIGIRDGRIAAIGDLSG-----ASAGEVIDCRGLHVLPGVIDSQVHFR 66 (444)
T ss_pred cCcEEEECCEEECCCCC--eeeEEEEECCEEEEecCCCC-----CCCceEEECCCCEEccCEEecccccc
Confidence 36889999999997642 45799999999999986432 13468999999999999999999974
No 72
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.39 E-value=3.8e-11 Score=127.03 Aligned_cols=69 Identities=38% Similarity=0.612 Sum_probs=54.2
Q ss_pred CcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhh--h------hhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAV--Q------QLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 43 ~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~--~------~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
..+|++|+|++|++..+ ....+|.|+||||++||+..+. . ...+..+++||++|++|+|||||+|+|+.
T Consensus 63 ~~~DlVI~Na~IiD~~g--i~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~ 139 (567)
T cd00375 63 DVLDLVITNALIIDYTG--IYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFI 139 (567)
T ss_pred ccCCEEEECeEEECCCC--cEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCC
Confidence 35689999999998652 3467999999999999975321 0 11234679999999999999999999974
No 73
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.39 E-value=6.3e-13 Score=137.05 Aligned_cols=100 Identities=19% Similarity=0.102 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchhHhhh
Q 010613 367 SLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTTFWQ 446 (506)
Q Consensus 367 ~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~~~~ 446 (506)
.++.+...++.. +++.+|+.++..++.+++..++ .+ .+.+++||... .+.+++|++.|+.++++|.+....
T Consensus 181 ~l~~l~~~~~~~-~~v~vHa~~~~~i~~~l~~~~e----~g---~~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~ 251 (359)
T cd01309 181 KLEALLPVLKGE-IPVRIHAHRADDILTAIRIAKE----FG---IKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPK 251 (359)
T ss_pred cHHHHHHHHcCC-eeEEEEeCCHHHHHHHHHHHHH----cC---CCEEEECchhH-HHHHHHHHHcCCCEEECccccccc
Confidence 344555544433 9999999998888877776544 33 36899999988 889999999999999999863211
Q ss_pred hhcCccccccccccccccccchhccc-cccccc-cccc
Q 010613 447 SIVNPLLISTDVWNFRYTIGPIHIIA-VLVSIF-DGLF 482 (506)
Q Consensus 447 ~~~~~~~~g~~~~~~~~pi~~~~~~G-v~V~lG-D~~a 482 (506)
. . ..+..+..++++++++| |+|++| |++.
T Consensus 252 ~------~-~~~~~~~~~~~~l~~aGGv~valgsD~~~ 282 (359)
T cd01309 252 K------V-EEVNDAIDTNAYLLKKGGVAFAISSDHPV 282 (359)
T ss_pred c------H-HHhhcchhhHHHHHHcCCceEEEECCCCC
Confidence 1 0 11234667889999998 999999 9864
No 74
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.37 E-value=7.1e-11 Score=125.02 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=54.8
Q ss_pred CcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhh--hh------hhcCCCeEEEcCCCeeeccccccccccc
Q 010613 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAV--QQ------LAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 43 ~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~--~~------~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
...|++|+|++|+++... ....+|.|+||||++||+..+. .. ..++.+++||++|++|+|||||+|+|+.
T Consensus 66 ~~~DlVItNa~IIDp~~G-i~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~ 143 (569)
T PRK13308 66 GALDFVLCNVTVIDPVLG-IVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFD 143 (569)
T ss_pred CcCCEEEECeEEEcCCCC-eEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCC
Confidence 356899999999986533 4567999999999999974311 00 1124679999999999999999999974
No 75
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=99.37 E-value=4.6e-11 Score=124.83 Aligned_cols=66 Identities=29% Similarity=0.566 Sum_probs=55.0
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g 116 (506)
++++|+|+++++.+ .....+|.|+||+|++||...... ++.+++|+.|++++||+||.|+|+..+|
T Consensus 1 ~~~lIk~~~iv~~~--~~~~~di~i~~g~I~~Ig~~l~~~----~~~~iiD~~g~~v~PG~ID~HVH~repg 66 (430)
T COG0044 1 MDLLIKNARVVDPG--EDEVADILIKDGKIAAIGKNLEPT----SGAEIIDAKGLLVLPGLVDLHVHFREPG 66 (430)
T ss_pred CcEEEeccEEEcCC--CceEecEEEECCEEEEeccCCCCC----CCCcEEECCCCEEccCeeEEEEecCCCC
Confidence 46899999999973 346789999999999999763321 4789999999999999999999997554
No 76
>PRK09061 D-glutamate deacylase; Validated
Probab=99.36 E-value=2.9e-11 Score=130.02 Aligned_cols=64 Identities=36% Similarity=0.593 Sum_probs=53.7
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
+++++|+|++|++++.......+|.|+||+|++||+... ...++||++|++|+|||||+|+|..
T Consensus 18 ~~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~~------~~~~viD~~g~~v~PG~ID~H~H~~ 81 (509)
T PRK09061 18 PYDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAI------EGDRTIDATGLVVAPGFIDLHAHGQ 81 (509)
T ss_pred cCCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCCC------CCCeEEeCCCCEEecCeEeeeeCCC
Confidence 467899999999987554456799999999999987421 3568999999999999999999964
No 77
>PRK08044 allantoinase; Provisional
Probab=99.35 E-value=1.8e-10 Score=122.24 Aligned_cols=61 Identities=31% Similarity=0.630 Sum_probs=50.8
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
+|++|+|++|++.+. ....+|.|+||+|.+|++... ...++||+.|.+++|||+|.|+|+.
T Consensus 3 ~~~~i~n~~vi~~~~--~~~~~i~I~dg~I~~i~~~~~------~~~~~iD~~G~~v~Pg~iD~h~h~~ 63 (449)
T PRK08044 3 FDLIIKNGTVILENE--ARVVDIAVKGGKIAAIGQDLG------DAKEVMDASGLVVSPGMVDAHTHIS 63 (449)
T ss_pred ceEEEECcEEEcCCC--CEEEEEEEECCEEEEecCCCC------CCCeEEECCCCEEcCCeeccccccC
Confidence 578999999998653 344799999999999986421 2568999999999999999999975
No 78
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.30 E-value=2.3e-10 Score=123.63 Aligned_cols=60 Identities=38% Similarity=0.736 Sum_probs=51.3
Q ss_pred cEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 46 ~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|++|+|++|+++........+|+|+||||++||+. ...++||++|++|+|||||+|+|+.
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~--------~~~~viDa~G~~v~PG~ID~H~Hi~ 60 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY--------NGVKVIDALGEYAVPGFIDAHIHIE 60 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCC--------CCCeEEECCCCEEEeCeEecccccC
Confidence 57899999998765555567999999999999864 1358999999999999999999985
No 79
>PRK09358 adenosine deaminase; Provisional
Probab=99.26 E-value=4.7e-11 Score=122.31 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCC--hhHHHHHHhCCCEEEecc
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQV 440 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~--~~~i~r~a~lgv~~s~~P 440 (506)
++++.+++..+.|++.|+++++|+.+......+.++++. .|. .+|.||..++ +++++++++.|+.+++||
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~----lg~----~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP 250 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDE----LGA----ERIGHGVRAIEDPALMARLADRRIPLEVCP 250 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHH----cCC----cccchhhhhccCHHHHHHHHHcCCeEEECC
Confidence 467899999999999999999999753222223333332 232 3689999995 567999999999999999
Q ss_pred hhHhhhhhcCccccccccccccccccchhccccccccc-cccccccccCCCCCcchhhHHH
Q 010613 441 WTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIFT 500 (506)
Q Consensus 441 ~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~~ 500 (506)
.++. +++....-+..|+++++++||+|++| |+++.+ ..+.+.+|..+..
T Consensus 251 ~Sn~--------~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~---~~~l~~e~~~~~~ 300 (340)
T PRK09358 251 TSNV--------QTGAVPSLAEHPLKTLLDAGVRVTINTDDPLVF---GTTLTEEYEALAE 300 (340)
T ss_pred Cccc--------cccccCCcccChHHHHHHCCCEEEECCCCCccc---CCCHHHHHHHHHH
Confidence 8742 12211011468999999999999999 988643 2455556555444
No 80
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.25 E-value=3.1e-10 Score=119.84 Aligned_cols=70 Identities=31% Similarity=0.560 Sum_probs=54.2
Q ss_pred CCcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhh--h------hhcCCCeEEEcCCCeeeccccccccccc
Q 010613 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ--Q------LAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 42 ~~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~--~------~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
.+..|++|+|++|++..+ ....+|.|+||||++||+..... . ..++.+++||++|++|+|||||+|+|+.
T Consensus 62 ~~~~DlVI~Na~IiD~~g--i~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~ 139 (568)
T PRK13985 62 KEELDLIITNALIIDYTG--IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFI 139 (568)
T ss_pred CCcCCEEEECeEEECCCC--cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCC
Confidence 345789999999998542 34569999999999999742211 0 0124679999999999999999999974
No 81
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.23 E-value=1.5e-10 Score=118.49 Aligned_cols=92 Identities=12% Similarity=-0.010 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCeEEEeecc-chHHHHHHHHHHHHHHhcCCCCCCceEeecccCCh-----------hHHHHHHhCCC
Q 010613 367 SLLSMTMASDKSGLQVAIHAIG-DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-----------GTAARFGDQGI 434 (506)
Q Consensus 367 ~l~~~~~~a~~~g~~v~iHa~G-d~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~-----------~~i~r~a~lgv 434 (506)
.+++.++.+.+.|.++.+|+-. .....+++..+ +....+.||...+. +.+..+.+.|+
T Consensus 150 ~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l----------~~g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~ 219 (338)
T cd01307 150 PLELAKKIAKEADLPLMVHIGSPPPILDEVVPLL----------RRGDVLTHCFNGKPNGIVDEEGEVLPLVRRARERGV 219 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHh----------cCCCEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCE
Confidence 3778888999999999999853 33334443322 11248999999765 67899999999
Q ss_pred EEEecchhHhhhhhcCccccccccccccccccchhcccc-ccccc-ccccc
Q 010613 435 VASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAV-LVSIF-DGLFC 483 (506)
Q Consensus 435 ~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv-~V~lG-D~~a~ 483 (506)
.+++...... . ...+.+++++.|+ +.+++ |.+..
T Consensus 220 ~~d~~~G~~~---------~------~~~~~~~l~~~G~~~~~lstD~~~~ 255 (338)
T cd01307 220 IFDVGHGTAS---------F------SFRVARAAIAAGLLPDTISSDIHGR 255 (338)
T ss_pred EEEeCCCCCc---------h------hHHHHHHHHHCCCCCeeecCCcccc
Confidence 9875422100 0 1123456778887 56789 97643
No 82
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=99.21 E-value=4e-10 Score=114.67 Aligned_cols=214 Identities=12% Similarity=0.047 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCC--cccCchHHHHH----HHHHHHhcCCCeeEEEEccCcc---chh
Q 010613 240 VSVDERREALLRASNLALSRGVTTVVDFGRYYPGE--SVQLSWEDFAD----VYQWASYSEKMKIRVCLFFPLE---TWS 310 (506)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~--~~~~~~~~~~~----~~~~l~~~g~l~~Rv~~~~~~~---~~~ 310 (506)
.+.+++....+.++.++.+.|| ++.|+.+. |.. ....+.++.++ ++++.. .+.++|+.+..... ..+
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv-~y~E~r~~-p~~~~~~g~~~~~~~~~~~~~i~~a~--~~~gi~~~li~~~~r~~~~~ 140 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGV-VYAEVFFD-PQLHTNRGISPDTVVEAVLDGLDEAE--RDFGIKSRLILCGMRHKQPE 140 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC-EEEEEEeC-ccccccCCCCHHHHHHHHHHHHHHHH--HhcCCeEEEEEEEeCCCCHH
Confidence 5889999999999999999999 58887531 210 00112233322 333332 24566664432221 112
Q ss_pred hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch
Q 010613 311 SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR 390 (506)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~ 390 (506)
...+..+...++..+.+ .|+- +.| .+ ...+.+.+.++.+.|+++|+++++|+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~v--vg~~--l~~----------~e----------~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~ 196 (324)
T TIGR01430 141 AAEETLELAKPYKEQTI--VGFG--LAG----------DE----------RGGPPPDFVRAFAIARELGLHLTVHAGELG 196 (324)
T ss_pred HHHHHHHHHHhhccCcE--EEec--CCC----------CC----------CCCCHHHHHHHHHHHHHCCCCeEEecCCCC
Confidence 22222222111111111 1110 000 01 123588999999999999999999998542
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEeecccC--ChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccch
Q 010613 391 ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPI 468 (506)
Q Consensus 391 av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i--~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~ 468 (506)
....+.++++ +.|. .++.|+..+ +++++++|++.|+.+++||.++.. ++.-......|++++
T Consensus 197 ~~~~~~~~~~----~~g~----~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~--------l~~~~~~~~~pi~~l 260 (324)
T TIGR01430 197 GPESVREALD----DLGA----TRIGHGVRALEDPELLKRLAQENITLEVCPTSNVA--------LGVVKSLAEHPLRRF 260 (324)
T ss_pred ChHHHHHHHH----HcCc----hhcchhhhhccCHHHHHHHHHcCceEEECCccccc--------ccccCCcccChHHHH
Confidence 2222333332 2333 379999999 667999999999999999997532 211001136899999
Q ss_pred hccccccccc-cccccccccCCCCCcchhhHHH
Q 010613 469 HIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIFT 500 (506)
Q Consensus 469 ~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~~ 500 (506)
+++||+|++| |+++.+. .+.+.++..+..
T Consensus 261 ~~~Gv~v~igTD~~~~~~---~~l~~e~~~a~~ 290 (324)
T TIGR01430 261 LEAGVKVTLNSDDPAYFG---SYLTEEYEIAAK 290 (324)
T ss_pred HHCCCEEEECCCCCcccC---CCHHHHHHHHHH
Confidence 9999999999 9886432 255555554443
No 83
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.20 E-value=4.2e-10 Score=110.04 Aligned_cols=213 Identities=22% Similarity=0.188 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEccCccch---------
Q 010613 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETW--------- 309 (506)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~~~~~~--------- 309 (506)
..+.+++....+..++++.+.|||++.++...... . ..........+.+.+.. .+|+.........
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~-~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 101 (275)
T cd01292 27 ELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPP-T--TTKAAIEAVAEAARASA--GIRVVLGLGIPGVPAAVDEDAE 101 (275)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCc-c--ccchHHHHHHHHHHHhc--CeeeEEeccCCCCccccchhHH
Confidence 45788888999999999999999999998632111 0 00112212233332221 4666543221110
Q ss_pred hhHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccc
Q 010613 310 SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD 389 (506)
Q Consensus 310 ~~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd 389 (506)
+...+.+... .+ ..+.|+|+..... ....+.+.++++++.|+++|+++++|+.+.
T Consensus 102 ~~~~~~i~~~----~~-~~~~gi~~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~~~i~~H~~~~ 156 (275)
T cd01292 102 ALLLELLRRG----LE-LGAVGLKLAGPYT--------------------ATGLSDESLRRVLEEARKLGLPVVIHAGEL 156 (275)
T ss_pred HHHHHHHHHH----Hh-cCCeeEeeCCCCC--------------------CCCCCcHHHHHHHHHHHHcCCeEEEeeCCc
Confidence 1111111110 00 1233444222111 001478899999999999999999999865
Q ss_pred hH----HHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccc
Q 010613 390 RA----NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTI 465 (506)
Q Consensus 390 ~a----v~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi 465 (506)
.. +..+++.. .. +.+..+.|+..+++++++++++.|+.+++||.+... .+ .......++
T Consensus 157 ~~~~~~~~~~~~~~-------~~-~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~-~~~~~~~~~ 219 (275)
T cd01292 157 PDPTRALEDLVALL-------RL-GGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYL--------LG-RDGEGAEAL 219 (275)
T ss_pred ccCccCHHHHHHHH-------hc-CCCEEEECCccCCHHHHHHHHHcCCeEEECCccccc--------cc-CCcCCcccH
Confidence 53 33333322 11 568899999999999999999999999999986421 10 012356789
Q ss_pred cchhccccccccc-cccccccccCCCCCcchhhHHH
Q 010613 466 GPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIFT 500 (506)
Q Consensus 466 ~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~~ 500 (506)
+++++.|+++.+| |++..+ ...+++..++.+..
T Consensus 220 ~~~~~~g~~~~lgTD~~~~~--~~~~~~~~~~~~~~ 253 (275)
T cd01292 220 RRLLELGIRVTLGTDGPPHP--LGTDLLALLRLLLK 253 (275)
T ss_pred HHHHHCCCcEEEecCCCCCC--CCCCHHHHHHHHHH
Confidence 9999999999999 987542 33455555555443
No 84
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.19 E-value=2.1e-09 Score=114.23 Aligned_cols=65 Identities=23% Similarity=0.432 Sum_probs=52.4
Q ss_pred EEEEcCEEEeCCCCCc-eecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLL-FADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGL 117 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~-~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~ 117 (506)
++|+|++|+++..... ...+|.|+||+|+++++..+ ...++||++|++|+|||||+|+|+.++..
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~------~~~eVIDa~G~vVmPGfID~HvHg~gG~~ 67 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT------KPAKVIDASGKLVMAGGVDSHTHIAGPKV 67 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC------CCCeEEECCCCEEEeCEEeeeECCCcccc
Confidence 5789999999854332 35799999999999986532 13589999999999999999999986554
No 85
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=99.15 E-value=1.2e-09 Score=109.48 Aligned_cols=65 Identities=29% Similarity=0.557 Sum_probs=55.8
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~ 115 (506)
..++|+|++|+.-+. .+..+|.++||.|.+||+...++ .+.++||+.|++|+||.||+|+|+-+.
T Consensus 14 ~rllikgg~vvN~d~--~~~aDV~vedGiI~~vg~~l~ip----gg~~~ida~g~~ViPGgID~Hthlq~p 78 (522)
T KOG2584|consen 14 NRLLIKGGRVVNDDQ--SFKADVYVEDGIIKEVGENLIIP----GGVKVIDATGKMVIPGGIDPHTHLQMP 78 (522)
T ss_pred cceeeeCCEEEccCC--ceeeeEEeccCEEEEecccEEcC----CCceEEecCCcEEecCccCccceeccc
Confidence 457999999998773 46679999999999999885543 578999999999999999999998654
No 86
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.14 E-value=1.9e-09 Score=103.70 Aligned_cols=68 Identities=31% Similarity=0.576 Sum_probs=56.7
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g 116 (506)
+.|+++++++++++..+...-..|+|.||||++++.. +.+ .++++||++|++|.||+||.|+|...+|
T Consensus 3 qfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~d~-~ap----a~tq~Ida~Gc~VspG~iDlHvHvy~gg 70 (386)
T COG3964 3 QFDILLTGGRLIDPARGIDEITNIAIINGKIAAADDY-PAP----AETQIIDADGCIVSPGLIDLHVHVYYGG 70 (386)
T ss_pred ccceeeeCCeecccccccCccceeeeecCeEEeccCc-CCC----hhheEEccCccEeccCeeeeeeEEecCC
Confidence 5789999999999876665667899999999999943 322 3689999999999999999999987543
No 87
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.12 E-value=3.5e-09 Score=109.90 Aligned_cols=61 Identities=31% Similarity=0.627 Sum_probs=49.3
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
++|+|++|++. ......+|.|++|||..|++..+.+ ...+++|++|++|+|||||+|+|+.
T Consensus 1 ~~i~~~~v~~~--~~~~~~~i~i~~g~I~~i~~~~~~~----~~~~vid~~g~~l~PG~iD~H~H~~ 61 (374)
T cd00854 1 LIIKNARILTP--GGLEDGAVLVEDGKIVAIGPEDELE----EADEIIDLKGQYLVPGFIDIHIHGG 61 (374)
T ss_pred CEEEeEEEeCC--CEEcccEEEEECCEEEEecCCCCcc----cCCcEEECCCCEecccEEEeeeccc
Confidence 37889999987 2335679999999999998753321 2458999999999999999999985
No 88
>PRK08417 dihydroorotase; Provisional
Probab=99.07 E-value=4.5e-09 Score=109.54 Aligned_cols=40 Identities=30% Similarity=0.679 Sum_probs=34.8
Q ss_pred EEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 67 v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|.|+||||++|++.. .+.++||++|++|+|||||+|+|+.
T Consensus 1 i~I~dG~I~~i~~~~-------~~~~viDa~g~~vlPG~ID~HvH~~ 40 (386)
T PRK08417 1 IRIKDGKITEIGSDL-------KGEEILDAKGKTLLPALVDLNVSLK 40 (386)
T ss_pred CEEECCEEEEecCCC-------CCCeEEECCCCEEccCeeEEeeeeC
Confidence 579999999998652 2468999999999999999999984
No 89
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.07 E-value=1.3e-08 Score=106.18 Aligned_cols=63 Identities=30% Similarity=0.631 Sum_probs=51.8
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
++|+|+.|++++. ....+|+|+||+|++||+..+.+ ..+..++||++|++|+|||||+|+|+.
T Consensus 2 ~~i~~~~v~~~~~--~~~~~v~i~~g~I~~v~~~~~~~--~~~~~~~id~~g~~v~PG~id~H~H~~ 64 (387)
T cd01308 2 TLIKNAEVYAPEY--LGKKDILIAGGKILAIEDQLNLP--GYENVTVVDLHGKILVPGFIDQHVHII 64 (387)
T ss_pred EEEECcEEeCCCC--ccceEEEEECCEEEEEeCCcccc--cCCCCeEEECCCCEEccCeeehhhCcc
Confidence 4789999999763 34679999999999999765332 123568999999999999999999985
No 90
>PLN02303 urease
Probab=99.06 E-value=8.1e-09 Score=113.14 Aligned_cols=68 Identities=37% Similarity=0.590 Sum_probs=53.6
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchh--hhh------hhcCCCeEEEcCCCeeeccccccccccc
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA--VQQ------LAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~--~~~------~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
..|++|+|++|++..+ ....+|.|+||||++||+... +.. ..++.+++||++|++|+|||||+|+|+.
T Consensus 333 ~~DlVItNa~IID~~G--i~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~ 408 (837)
T PLN02303 333 SLDTVITNAVIIDYTG--IYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFI 408 (837)
T ss_pred cCCEEEeCeEEECCCC--cEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCC
Confidence 5689999999998542 355699999999999997421 111 1234579999999999999999999984
No 91
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.05 E-value=1.5e-10 Score=89.65 Aligned_cols=44 Identities=45% Similarity=0.797 Sum_probs=35.3
Q ss_pred EEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 67 v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
|+|+||||.+|++..+.. .+..+++|++|++|+|||||+|+|+.
T Consensus 1 V~I~~g~I~~v~~~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~ 44 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELP---ADAAEVIDAKGKYVMPGFIDMHTHLG 44 (68)
T ss_dssp EEEETTEEEEEESSCCTT---STCCEEEEETTCEEEE-EEEEEE-TT
T ss_pred CEEECCEEEEeCCCCCCC---CCCCEEEECCCCEEeCCeEeeeeccc
Confidence 689999999997654433 25678999999999999999999976
No 92
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=99.05 E-value=3.3e-08 Score=103.94 Aligned_cols=46 Identities=33% Similarity=0.672 Sum_probs=37.5
Q ss_pred eecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 63 FADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 63 ~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
...+|.|+||||++|++.. . ....++||++|++|+|||||.|+|+.
T Consensus 4 ~~~~v~I~~g~I~~i~~~~-~----~~~~~~ida~g~~v~PG~ID~H~H~~ 49 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLR-I----PPDAEVIDAKGLLVLPGFIDLHVHLR 49 (411)
T ss_pred EEEEEEEECCEEEEeeccC-C----CCCCeEEECCCCEEecCEEEcccCCC
Confidence 3568999999999997421 1 13458999999999999999999984
No 93
>PRK04250 dihydroorotase; Provisional
Probab=99.00 E-value=4.5e-08 Score=102.25 Aligned_cols=56 Identities=29% Similarity=0.630 Sum_probs=44.1
Q ss_pred EcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 50 TNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 50 ~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
.+++|++.+. ....+|.|+||||.+|++. .. +..++||++|++|+|||||+|+|+.
T Consensus 2 ~~~~v~~~~~--~~~~~i~i~~G~I~~i~~~-~~-----~~~~~iD~~g~~v~PG~ID~HvH~~ 57 (398)
T PRK04250 2 LEGKFLLKGR--IVEGGIGIENGRISKISLR-DL-----KGKEVIKVKGGIILPGLIDVHVHLR 57 (398)
T ss_pred eeEEEEECCc--EEEEEEEEECCEEEEeeCC-CC-----CCCeEEECCCCEEccCEEecccccc
Confidence 3578888652 3367899999999999741 11 2468999999999999999999973
No 94
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=98.98 E-value=2.3e-08 Score=105.91 Aligned_cols=62 Identities=26% Similarity=0.456 Sum_probs=50.6
Q ss_pred EEcCEEEeCCCCC-ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccc
Q 010613 49 VTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGL 117 (506)
Q Consensus 49 i~n~~I~t~~~~~-~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~ 117 (506)
|+|++|+++.... ....+|.|+||||++|++.. +..++||++|++|+|||||+|+|+..++.
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~-------~~~~vID~~G~~VmPGfID~HtH~~gg~~ 63 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA-------KPAKVIDASGKVVMAGGVDMHSHIAGGKV 63 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC-------CCCeEEECCCCEEECCeeeeeeCcccccc
Confidence 4789999986543 35679999999999998642 24589999999999999999999976553
No 95
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=2.4e-09 Score=107.98 Aligned_cols=121 Identities=29% Similarity=0.500 Sum_probs=86.1
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccccccccc---
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK--- 123 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~--- 123 (506)
..+.|++|||... .....+|.|+||+|.+|.+ .+.+ ...+++|++|.+|+|||||.|+|.+.+.+.+...+
T Consensus 2 ~~~~~~~i~t~~~-~~~~~~v~i~dg~I~~i~~-~~~p----~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~ 75 (380)
T COG1820 2 YALKNGRIFTGHG-VLDGGAVVIEDGKIEAVVP-AELP----ADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVET 75 (380)
T ss_pred ceeeccEEEcCcc-eEECcEEEEcCCEEEEEec-CcCC----CcceeecCCCCEecccEEEEeecCcCcccccCccCHHH
Confidence 3688999999874 4466799999999999997 3332 47899999999999999999999998887766211
Q ss_pred ---------CCCCC---------CHHHH---HHHHHHHHHcCCCCCeEEE----ecCCCCCcCC-------CCCChhhhh
Q 010613 124 ---------LRGVS---------HKDEF---VRRVKEAVKNSKKGSWILG----GGWNNDLWGG-------DLPMASWID 171 (506)
Q Consensus 124 ---------l~~~~---------s~~~~---~~~l~~~~~~~~~~~wi~g----~g~~~~~~~~-------~~p~~~~Ld 171 (506)
-.|++ +.+.+ ++.++++.+ ..+.-+.| ++|.....+| +.|+.++++
T Consensus 76 l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~--~~ga~ilGiHLEGP~ls~~kkGAh~~~~ir~~~~~~~~ 153 (380)
T COG1820 76 LETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIA--KGGAQILGIHLEGPFLSPEKKGAHNPEYIRPPDPEELE 153 (380)
T ss_pred HHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHh--ccCCceEEEEeecCccCHhhccCCCHHHhCCCCHHHHH
Confidence 12332 34544 444455544 45566777 4565554433 678888888
Q ss_pred hhCC
Q 010613 172 DITP 175 (506)
Q Consensus 172 ~~~~ 175 (506)
++..
T Consensus 154 ~~~~ 157 (380)
T COG1820 154 QLIA 157 (380)
T ss_pred HHHh
Confidence 7653
No 96
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=98.93 E-value=6.6e-09 Score=107.58 Aligned_cols=66 Identities=27% Similarity=0.558 Sum_probs=53.3
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~ 115 (506)
++++|+|++|++.+. .....+|.|+||||.+|++..+.+ +..+++|++|++|+|||||+|+|+..+
T Consensus 3 ~~~~i~n~~i~~~~~-~~~~~~i~V~dGkI~~I~~~~~~~----~~~~viD~~G~~i~PGfID~HvHg~~g 68 (380)
T TIGR00221 3 ESYLLKDIAIVTGNE-VIDNGAVGINDGKISTVSTEAELE----PEIKEIDLPGNVLTPGFIDIHIHGCGG 68 (380)
T ss_pred ceEEEEeeEEECCCC-EEeccEEEEECCEEEEEcccccCC----CCCeEEECCCCEEccceeeeeeccccC
Confidence 468999999999763 334679999999999998753321 245799999999999999999998654
No 97
>PRK10027 cryptic adenine deaminase; Provisional
Probab=98.90 E-value=1.1e-08 Score=110.87 Aligned_cols=75 Identities=25% Similarity=0.355 Sum_probs=58.9
Q ss_pred ccCCCcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccccc
Q 010613 39 TTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGL 117 (506)
Q Consensus 39 ~~~~~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~g~ 117 (506)
++....+|++|+|++|+++........+|+|+||+|++|++..+.. ...++||++|++|+|||||+|+|+.....
T Consensus 24 a~g~~~~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~----~~~~vIDa~G~~v~PGlIDaHvHiess~~ 98 (588)
T PRK10027 24 SRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADA----PALQRIDARGATAVPGFIDAHLHIESSMM 98 (588)
T ss_pred hCCCCCCCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCC----CCCeEEECCCCEEEECeEeccccCCcccC
Confidence 3445568899999999997544455678999999999997642211 24689999999999999999999876543
No 98
>PRK01211 dihydroorotase; Provisional
Probab=98.87 E-value=1.3e-07 Score=99.09 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=42.5
Q ss_pred cCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccc
Q 010613 51 NGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (506)
Q Consensus 51 n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~ 115 (506)
.+++++.+. ....+|.|+||||++|++.. +..+++|++| +|+|||||.|+|+...
T Consensus 4 ~~~~~~~~~--~~~~di~I~dGkI~~i~~~~-------~~~~~ida~g-~vlPG~ID~HvH~r~p 58 (409)
T PRK01211 4 CGNFYYKGK--FDYLEIEVEDGKIKSIKKDA-------GNIGKKELKG-AILPAATDIHVHFRTP 58 (409)
T ss_pred eceeEEcCc--EEEEEEEEECCEEEEecCCC-------CCceEEEecc-EEcCCeEEeeeccCCC
Confidence 356666552 34569999999999998542 1357899999 8999999999998643
No 99
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=98.83 E-value=3.2e-07 Score=95.33 Aligned_cols=24 Identities=38% Similarity=0.855 Sum_probs=21.8
Q ss_pred CeEEEcCCCeeecccccccccccc
Q 010613 91 TNVLNLQGKVVVPGFIDSHVHFIP 114 (506)
Q Consensus 91 ~~viD~~g~~v~PGfiD~H~H~~~ 114 (506)
.++||++|++|+||+||+|+|+..
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~ 25 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLRE 25 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCC
Confidence 478999999999999999999863
No 100
>PRK00369 pyrC dihydroorotase; Provisional
Probab=98.82 E-value=5.3e-07 Score=93.87 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=37.5
Q ss_pred ecEEEEECCEEEEEeCchhhhhhhcCCCeEEEc-CCCeeeccccccccccccc
Q 010613 64 ADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNL-QGKVVVPGFIDSHVHFIPG 115 (506)
Q Consensus 64 ~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~-~g~~v~PGfiD~H~H~~~~ 115 (506)
...+.+++|+|..|++.. ..+++++|+ +|++|+|||||.|+|+..+
T Consensus 13 ~~~~~~~~~~~~~i~~~~------~~~~~~id~~~G~~vlPG~ID~HvH~r~p 59 (392)
T PRK00369 13 KEIKEICINFDRRIKEIK------SRCKPDLDLPQGTLILPGAIDLHVHLRGL 59 (392)
T ss_pred CceEEEeeeeeeeEeecc------CCCCceeecCCCCEEeCCEEEcccccCCC
Confidence 357888999999998752 236788999 6999999999999998643
No 101
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=98.81 E-value=1.1e-07 Score=100.24 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchhH
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTT 443 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~ 443 (506)
+++++.+.++.|++.|+++.+|+.|+.+ ..+.++.++ |. ...|+....++.++++ ++|+.++++|.+.
T Consensus 119 ~~~~l~~~i~~A~~~g~~v~~Ha~g~~~--~~L~a~l~a----Gi-----~~dH~~~~~eea~e~l-~~G~~i~i~~g~~ 186 (422)
T cd01295 119 GDDEMLAKIQAAKKAGKPVDGHAPGLSG--EELNAYMAA----GI-----STDHEAMTGEEALEKL-RLGMYVMLREGSI 186 (422)
T ss_pred CcHHHHHHHHHHHhCCCEEEEeCCCCCH--HHHHHHHHc----CC-----CCCcCCCcHHHHHHHH-HCCCEEEEECccc
Confidence 5678999999999999999999999774 334454432 32 2259888888888887 7999999998763
Q ss_pred hhhhhcCccccccccccccccccchhccccccccc-ccc
Q 010613 444 FWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGL 481 (506)
Q Consensus 444 ~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~ 481 (506)
+.+.- .+ .+. +.+ +.|++++++ |.+
T Consensus 187 -~~~~~---~~----~~~---l~~--~~~~~i~l~TD~~ 212 (422)
T cd01295 187 -AKNLE---AL----LPA---ITE--KNFRRFMFCTDDV 212 (422)
T ss_pred -HhhHH---HH----HHh---hhh--ccCCeEEEEcCCC
Confidence 11110 00 001 111 258999999 976
No 102
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=98.77 E-value=8.7e-09 Score=106.66 Aligned_cols=61 Identities=33% Similarity=0.624 Sum_probs=49.5
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCC-Ceeeccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQG-KVVVPGFIDSHVHFIPG 115 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g-~~v~PGfiD~H~H~~~~ 115 (506)
+|++|+|++|++.. ..+|+|+||||++||+..+. ++.++||++| ++|+|||||+|+|+..+
T Consensus 1 ~~~~i~n~~i~~~~-----~~~v~i~~g~I~~v~~~~~~-----~~~~~iD~~g~~~l~PG~ID~H~H~~~~ 62 (365)
T TIGR03583 1 YDLLIKNGRTVNGT-----PVDIAIEDGKIAAVGTTITG-----SAKQTIDLEGETYVSAGWIDDHTHCFPK 62 (365)
T ss_pred CcEEEECcEEecCC-----eeEEEEECCEEEEecCCCCC-----CCCeEEECCCCeEEecCEEEeeeccCCC
Confidence 36899999999742 23899999999999864321 2458999999 99999999999998743
No 103
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=98.76 E-value=8e-08 Score=97.50 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=75.8
Q ss_pred cCCCHHHHHHHHHHHHH-----C-CCeEEEeeccchHHH----HHH--HHHHHHHHhcCCC-----CCCceEeecccCCh
Q 010613 361 QVMELESLLSMTMASDK-----S-GLQVAIHAIGDRAND----LVL--DMYKSVVVTTGKR-----DQRFRIEHAQHLAS 423 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~-----~-g~~v~iHa~Gd~av~----~~l--~a~e~~~~~~g~~-----~~r~~i~H~~~i~~ 423 (506)
..++.+.++..++.+++ . +.++++|+.+....- ... ..++.. ...+.. +.+..+.||..+++
T Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~~~~ 217 (333)
T PF01979_consen 139 YTVSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEAL-DHLGLLEEAIDDGVDLIAHGTHLSD 217 (333)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHH-HHHHSCHHHHHHHCEEEEEHTTSEH
T ss_pred ccchhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhh-ccchhhhhhcccccceeeccccCCH
Confidence 45788899999999988 4 999999998766540 000 000000 111122 45789999999999
Q ss_pred hHHHHHHhCCCEEEecchhHhhhhh-------cCcccccc-ccccccccccchhcc-ccccccc-ccc
Q 010613 424 GTAARFGDQGIVASMQVWTTFWQSI-------VNPLLIST-DVWNFRYTIGPIHII-AVLVSIF-DGL 481 (506)
Q Consensus 424 ~~i~r~a~lgv~~s~~P~~~~~~~~-------~~~~~~g~-~~~~~~~pi~~~~~~-Gv~V~lG-D~~ 481 (506)
+++++|++.+..+..||....+... +....-+. ...+...++.+++++ |++ +| ||.
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg~ 283 (333)
T PF01979_consen 218 EEIELLKETGIGIIHCPISNDSAPHKPGKAIMMDGTAEGIYGLGSGGAPLFRMLDKMGVN--LGTDGV 283 (333)
T ss_dssp HHHHHHHHHTHEEEEEHHHHHHHHHHTTHHSETTBSBTSBSCTTHHHHHHHHHHHCTTHE--ETTCTT
T ss_pred HHhhhhhccCCccccccchhhhhccccccccccchhccccccccccccchhhhhhhcccc--cccccc
Confidence 9999999999999999987543100 00000000 012344667777777 888 99 943
No 104
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.71 E-value=1.3e-08 Score=102.01 Aligned_cols=67 Identities=30% Similarity=0.596 Sum_probs=56.8
Q ss_pred ccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeecccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~ 114 (506)
.|++|++++||++.++.++..+|.|+||+|++|+....-. ....++||..|++|.|||||.|+|...
T Consensus 6 YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~dg---~~~~eevDaagriVaPGFIDvHtHyD~ 72 (579)
T COG3653 6 YDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDG---TGCPEEVDAAGRIVAPGFIDVHTHYDA 72 (579)
T ss_pred eeEEEeeceEEeCCCCCccccccccccceEEEEecccccc---cCCCeeecccCcEecccEEEeeecccc
Confidence 6899999999999988888889999999999999753211 123489999999999999999999753
No 105
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=98.69 E-value=3e-08 Score=102.91 Aligned_cols=64 Identities=31% Similarity=0.542 Sum_probs=51.4
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~ 115 (506)
++|+|++|++.+. .....+|.|+||||.+|++..+.+ .+.++||++|++|+|||||+|+|++.+
T Consensus 2 ~~i~n~~i~~~~~-~~~~~~v~IedgkI~~I~~~~~~~----~~~~~ID~~G~~l~PG~ID~HvHG~~g 65 (382)
T PRK11170 2 YALTNGRIYTGHE-VLDDHAVVIADGLIEAVCPVAELP----PGIEQRDLNGAILSPGFIDLQLNGCGG 65 (382)
T ss_pred EEEEeeEEECCCC-eEeCCEEEEECCEEEEecCCccCC----CCCeEEeCCCCEEccceeeeeecCccC
Confidence 5789999999873 334569999999999998753321 245899999999999999999997643
No 106
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=98.67 E-value=6e-07 Score=90.55 Aligned_cols=203 Identities=14% Similarity=0.053 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCCcc--cCchH----HHHHHHHHHHhcCC-CeeEEEEccCc-cchh--
Q 010613 241 SVDERREALLRASNLALSRGVTTVVDFGRYYPGESV--QLSWE----DFADVYQWASYSEK-MKIRVCLFFPL-ETWS-- 310 (506)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~--~~~~~----~~~~~~~~l~~~g~-l~~Rv~~~~~~-~~~~-- 310 (506)
+.+++.+.+...++++.+.||.- .++.+....... ..+.. .+.+++++..+... +.+|+.+...- .+.+
T Consensus 40 ~~~~l~~~~~~~~~~~~~d~V~Y-~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lI~~~~R~~~~~~~ 118 (305)
T cd00443 40 KGEALARALKEVIEEFAEDNVQY-LELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQWFPPIKVRLILSVDRRGPYVQN 118 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEE-EEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHHHcCCeeEeEEEEEeCCCChhhh
Confidence 66888889999999999999964 444321110000 11222 22344444444333 45554433211 1111
Q ss_pred --hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCC-CeEEEeec
Q 010613 311 --SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSG-LQVAIHAI 387 (506)
Q Consensus 311 --~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g-~~v~iHa~ 387 (506)
...+.++....+ .+ .+.|+-+. |. +. .+ ..+...+....+.|++.| +++.+|+.
T Consensus 119 ~~~~~~~~~l~~~~-~~--~vvG~Dl~--g~----------E~------~~--~~~~~~f~~~~~~ar~~g~l~~t~HaG 175 (305)
T cd00443 119 YLVASEILELAKFL-SN--YVVGIDLV--GD----------ES------KG--ENPLRDFYSYYEYARRLGLLGLTLHCG 175 (305)
T ss_pred hhhHHHHHHHHHHh-cC--CEEEEEcC--CC----------CC------CC--CCCHHHHHHHHHHHHHcCCcceEEeec
Confidence 122222211111 12 24444322 21 00 00 025778889999999999 99999997
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCCCceEeecccCCh--hHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccc
Q 010613 388 GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS--GTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTI 465 (506)
Q Consensus 388 Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~--~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi 465 (506)
+......+.+++... ..+|.|+..+.+ +.++++++.++.+.+||.++... +....-...|+
T Consensus 176 E~~~~~~v~~~~~~~---------~~RIgHg~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~--------~~~~~~~~hP~ 238 (305)
T cd00443 176 ETGNREELLQALLLL---------PDRIGHGIFLLKHPELIYLVKLRNIPIEVCPTSNVVL--------GTVQSYEKHPF 238 (305)
T ss_pred CCCChHHHHHHHHhc---------cceeeceEecCCCHHHHHHHHHcCCEEEECcchhhhh--------cCCCChhhChH
Confidence 543333333443211 459999999987 99999999999999999985321 11000124699
Q ss_pred cchhccccccccc-cccccc
Q 010613 466 GPIHIIAVLVSIF-DGLFCY 484 (506)
Q Consensus 466 ~~~~~~Gv~V~lG-D~~a~~ 484 (506)
++++++|++|++| |+++.+
T Consensus 239 ~~~~~~G~~v~i~TDd~~~~ 258 (305)
T cd00443 239 MRFFKAGLPVSLSTDDPGIF 258 (305)
T ss_pred HHHHHCCCeEEEeCCCCccc
Confidence 9999999999999 998753
No 107
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=98.63 E-value=1.5e-06 Score=89.78 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHH-------------------HHHHH---HHHhcCCCCCCceEeeccc
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVL-------------------DMYKS---VVVTTGKRDQRFRIEHAQH 420 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l-------------------~a~e~---~~~~~g~~~~r~~i~H~~~ 420 (506)
.+...+.+.++.+. ..+.+|+..+.-..... .++.+ ..+.. +.|..|.|.+.
T Consensus 108 ~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~P~~aE~~av~r~~~la~~~---~~~~hi~Hvs~ 181 (361)
T cd01318 108 DDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESAHPRIRDAEAAAVATARALKLARRH---GARLHICHVST 181 (361)
T ss_pred CCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhccCCCCcCCHHHHHHHHHHHHHHHHHH---CCCEEEEeCCC
Confidence 46677777776653 78999986432111000 01111 11222 45788888875
Q ss_pred CChhHHHHHHhC--CCEEEecchhHhhhhh-cCccccccccccccccccch---------hccccccccc-c-cc
Q 010613 421 LASGTAARFGDQ--GIVASMQVWTTFWQSI-VNPLLISTDVWNFRYTIGPI---------HIIAVLVSIF-D-GL 481 (506)
Q Consensus 421 i~~~~i~r~a~l--gv~~s~~P~~~~~~~~-~~~~~~g~~~~~~~~pi~~~---------~~~Gv~V~lG-D-~~ 481 (506)
.+.++++++. ++.+.+||.+.++..- +. ..|. ++.-.+|+++- ++.|....+| | +|
T Consensus 182 --~~~~~~i~~~k~~vt~ev~ph~L~l~~~~~~--~~~~-~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P 251 (361)
T cd01318 182 --PEELKLIKKAKPGVTVEVTPHHLFLDVEDYD--RLGT-LGKVNPPLRSREDRKALLQALADGRIDVIASDHAP 251 (361)
T ss_pred --HHHHHHHHHhCCCeEEEeCHHHhhcCHHHHh--cCCC-eEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCC
Confidence 5688888777 8999999998654321 11 1232 23445788776 8889999999 9 54
No 108
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=98.61 E-value=5.4e-08 Score=102.48 Aligned_cols=75 Identities=37% Similarity=0.650 Sum_probs=61.5
Q ss_pred cccccCCCcccEEEEcCEEEeCCCCCceecEEEEECCEEEEE-eCchhhhhhhcCCCeEEEcCCCeeecccccccccccc
Q 010613 36 TTTTTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSV-GNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (506)
Q Consensus 36 ~~~~~~~~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~v-g~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~ 114 (506)
+-+......+|++++|++|++.-......++|+|.+|+|++| ++.. .+++++||+.|++|.|||||+|+|.-.
T Consensus 15 v~va~G~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~------~e~~~~iDa~g~yivPGfID~H~HIES 88 (584)
T COG1001 15 VAVARGRAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR------AEATEVIDAAGRYIVPGFIDAHLHIES 88 (584)
T ss_pred HHHHcCCCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC------cccceeecCCCCEeccceeecceeccc
Confidence 334566778999999999999876666788999999999995 4432 368899999999999999999999654
Q ss_pred cc
Q 010613 115 GG 116 (506)
Q Consensus 115 ~g 116 (506)
..
T Consensus 89 Sm 90 (584)
T COG1001 89 SM 90 (584)
T ss_pred cc
Confidence 43
No 109
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.56 E-value=5e-07 Score=88.14 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=46.2
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVH 111 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H 111 (506)
+++.|.+|+..|. ...+.|.|+||+|..|..... ....-+|++|.+++|||||.|+-
T Consensus 1 ~~lsnarivl~D~--v~~gsv~i~DG~Ia~i~~g~s------~~~~~~d~eGd~LLPGlIeLHtD 57 (377)
T COG3454 1 MILSNARIVLEDR--VVNGSVLIRDGLIADIDEGIS------PLAAGIDGEGDYLLPGLIELHTD 57 (377)
T ss_pred CccccceEEeecc--eeeeeEEEecceEeeeccccC------cccccccCCCCeecccchhhcch
Confidence 3678999999874 345899999999999975422 23567999999999999999974
No 110
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=98.48 E-value=8.1e-06 Score=83.59 Aligned_cols=106 Identities=11% Similarity=0.031 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCCh-hHHHHHHhCC--CEEEe
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASM 438 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~-~~i~r~a~lg--v~~s~ 438 (506)
..+.+.+.+.++.+.+.|.++.+|+. .++.. + ++. +.+..|.|...... +.++.+++.| |++.+
T Consensus 111 ~~~~~~l~~~~~~~~~~g~~v~~H~E------r~~~l---a-~~~---g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev 177 (337)
T cd01302 111 DVDDGTLMRTFLEIASRGGPVMVHAE------RAAQL---A-EEA---GANVHIAHVSSGEALELIKFAKNKGVKVTCEV 177 (337)
T ss_pred ccCHHHHHHHHHHHHhcCCeEEEeHH------HHHHH---H-HHh---CCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEc
Confidence 35788999999999999999999987 12221 1 222 34678889874322 3444445555 66788
Q ss_pred cchhHhhhhhcCcccccccccccccccc---------chhccccccccc-cccc
Q 010613 439 QVWTTFWQSIVNPLLISTDVWNFRYTIG---------PIHIIAVLVSIF-DGLF 482 (506)
Q Consensus 439 ~P~~~~~~~~~~~~~~g~~~~~~~~pi~---------~~~~~Gv~V~lG-D~~a 482 (506)
+|.+.++...... ..+. .+.-.+|++ ..++.|+.-.++ |-.+
T Consensus 178 ~ph~L~l~~~~~~-~~~~-~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p 229 (337)
T cd01302 178 CPHHLFLDESMLR-LNGA-WGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAP 229 (337)
T ss_pred ChhhheeCHHHhh-CCCc-eEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCC
Confidence 9988643221000 0111 112234444 356678888999 8553
No 111
>PTZ00124 adenosine deaminase; Provisional
Probab=98.41 E-value=3.8e-06 Score=86.30 Aligned_cols=198 Identities=14% Similarity=0.042 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCcceEEeCccCCCCC---cccCchHHHHHHHH----HHHhcCCCeeEEEEccCc---cchh
Q 010613 241 SVDERREALLRASNLALSRGVTTVVDFGRYYPGE---SVQLSWEDFADVYQ----WASYSEKMKIRVCLFFPL---ETWS 310 (506)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~GiTsv~d~~~~~~g~---~~~~~~~~~~~~~~----~l~~~g~l~~Rv~~~~~~---~~~~ 310 (506)
+.+++++.....++++.+-||.- .+..+ .|.. ....+++++++++. +..++-+.++.+.+.+.. .+.+
T Consensus 100 t~~dl~r~a~e~~~d~~~dgV~Y-~Eir~-~P~~~~~~~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~~~e 177 (362)
T PTZ00124 100 DYEVIEDLAKHAVFNKYKEGVVL-MEFRY-SPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGHDAA 177 (362)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEE-EEEEc-CchhhhcCCCCCHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCCCHH
Confidence 67888888889999999999864 44432 1210 01123444444433 232311344444332221 1122
Q ss_pred hHHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccc-
Q 010613 311 SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD- 389 (506)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd- 389 (506)
...+.++...++.+ . +-|+- ++|. +. + ...+.+..+.|++.|+++.+||.+.
T Consensus 178 ~a~e~~~~a~~~~~-~--vvGiD--LaG~----------E~-------~-----~~~f~~~f~~Ar~~Gl~~t~HaGE~~ 230 (362)
T PTZ00124 178 PIKESADFCLKHKA-D--FVGFD--HAGH----------EV-------D-----LKPFKDIFDYVREAGVNLTVHAGEDV 230 (362)
T ss_pred HHHHHHHHHHhccC-C--eEEEe--ccCC----------CC-------C-----cHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 22233222222212 1 33332 2221 00 1 1347788899999999999999752
Q ss_pred --hHHHHHHHHHHHHHHhcCCCCCCceEeecccC--ChhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccc
Q 010613 390 --RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTI 465 (506)
Q Consensus 390 --~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i--~~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi 465 (506)
.....+.+++... | -.||.|+..+ +++.++++++.+|.+.+||.++....... .-..-|+
T Consensus 231 ~~~~~~~v~~ai~~l----~----~~RIGHG~~~~~d~~l~~~l~~~~I~lEvCPtSN~~~~~v~--------~~~~HPi 294 (362)
T PTZ00124 231 TLPNLNTLYSAIQVL----K----VKRIGHGIRVAESQELIDMVKEKDILLEVCPISNVLLNNAK--------SMDTHPI 294 (362)
T ss_pred CCCcchhHHHHHHHh----C----CCccccccccCCCHHHHHHHHHcCCeEEECCcchhhhhcCC--------chhhHHH
Confidence 1223333444332 2 3599999999 58899999999999999999865332211 1124699
Q ss_pred cchhccccccccc-ccccc
Q 010613 466 GPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 466 ~~~~~~Gv~V~lG-D~~a~ 483 (506)
+.++++|++|+++ |.++-
T Consensus 295 ~~l~~~Gv~v~InTDDp~~ 313 (362)
T PTZ00124 295 RKLYDAGVKVSVNSDDPGM 313 (362)
T ss_pred HHHHHCCCcEEEeCCCccc
Confidence 9999999999999 98864
No 112
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=98.20 E-value=2.3e-05 Score=80.33 Aligned_cols=103 Identities=16% Similarity=0.035 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHCC--CeEEEeeccch-----HHHHHHHHHHHHHHhcCCCCCCceEeecccCC--hhHHHHHHhCCC
Q 010613 364 ELESLLSMTMASDKSG--LQVAIHAIGDR-----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGI 434 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g--~~v~iHa~Gd~-----av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~--~~~i~r~a~lgv 434 (506)
+.+.+....+.|++.| +++.+||-+.. ....+.+++. . | -.||-|+..+. |+.++++++.+|
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~-l----g----~~RIGHG~~~~~dp~ll~~l~~~~I 247 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALL-L----N----TKRIGHGFALPKHPLLMDLVKKKNI 247 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHH-h----C----CCcCccccccCcCHHHHHHHHHcCC
Confidence 5778889999999999 99999996432 1233344441 1 2 24999999995 889999999999
Q ss_pred EEEecchhHhhhhhcCccccccccccccccccchhccccccccc-ccccc
Q 010613 435 VASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 435 ~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
.+.+||.++...+... .-..-|++.++++||+|++. |.++-
T Consensus 248 ~lEvCPtSN~~~~~v~--------~~~~HPl~~ll~~Gv~vtinTDDp~~ 289 (345)
T cd01321 248 AIEVCPISNQVLGLVS--------DLRNHPAAALLARGVPVVISSDDPGF 289 (345)
T ss_pred eEEECcchhhhhcccc--------chhhChHHHHHHCCCeEEEeCCCcch
Confidence 9999999864322211 01236999999999999999 98864
No 113
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=98.15 E-value=8.3e-05 Score=74.68 Aligned_cols=70 Identities=34% Similarity=0.538 Sum_probs=56.5
Q ss_pred CCcccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchh------hhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 42 ~~~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~------~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
....|++|.|+.|++-. .....+|.|+||||..||.... +.-..++.+++|-.+|+++..|=+|+|+|+.
T Consensus 64 ~~~~D~VITNa~IiD~~--Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI 139 (568)
T COG0804 64 AGALDLVITNALIIDYW--GIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFI 139 (568)
T ss_pred cCcccEEEeeeEEEecc--ceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEe
Confidence 44679999999999874 2456799999999999996432 1112367889999999999999999999985
No 114
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=98.13 E-value=2.3e-05 Score=80.00 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCcceEEeC---ccCC-CCCcccCchHHHH----HHHHHHHhcCCCeeEEEEccCcc-chhh
Q 010613 241 SVDERREALLRASNLALSRGVTTVVDF---GRYY-PGESVQLSWEDFA----DVYQWASYSEKMKIRVCLFFPLE-TWSS 311 (506)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~GiTsv~d~---~~~~-~g~~~~~~~~~~~----~~~~~l~~~g~l~~Rv~~~~~~~-~~~~ 311 (506)
+.+..+..+...++++.+.||.-+-=. .... .++. .+.++.+ +.++...++-.+.+|+.....-. ..+.
T Consensus 72 ~~e~~~~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~--~~~~~~~~~i~~~~~~a~~~~~i~~~li~~~~R~~~~~~ 149 (331)
T PF00962_consen 72 TPEDLRRYAYEVLEDFAEDNVVYLELRFSPQFHAQLGGN--LSFDEVVEAIIEGIDRAEKEFGIKVRLIISVLRHFPDEW 149 (331)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEESHHHHHTTTCS--STHHHHHHHHHHHHHHHHHHHTTEEEEEEEEETTSTHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEeccccccccCCC--CCHHHHHHHHHhhhhhccccccccccccccccccchHHH
Confidence 778888899999999999999875321 1000 0100 1223332 33344333333666665442211 1122
Q ss_pred HHHHHHhcCCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchH
Q 010613 312 LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA 391 (506)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~a 391 (506)
..+..+...++.+.. +.|+- +.|. +.. .++..+....+.|+++|+++.+||-+...
T Consensus 150 ~~~~~~~~~~~~~~~--vvG~d--l~g~----------E~~----------~~~~~~~~~~~~a~~~gl~~t~HaGE~~~ 205 (331)
T PF00962_consen 150 AEEIVELASKYPDKG--VVGFD--LAGD----------EDG----------GPPLKFAPAFRKAREAGLKLTVHAGETGG 205 (331)
T ss_dssp HHHHHHHHHHTTTTT--EEEEE--EESS----------TTS----------TTGGGHHHHHHHHHHTT-EEEEEESSSST
T ss_pred HHHHHHHHhhcccce--EEEEE--ecCC----------ccc----------CchHHHHHHHhhhcccceeecceecccCC
Confidence 222222211121222 23332 2222 111 12223778888899999999999986666
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEeecccCC--hhHHHHHHhCCCEEEecchhHhhhhhcCccccccccccccccccchh
Q 010613 392 NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIH 469 (506)
Q Consensus 392 v~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~--~~~i~r~a~lgv~~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~ 469 (506)
.....+++... | -.||.|+..+. |+-++++++.+|.+.+||.++.....+.. + .--|+++++
T Consensus 206 ~~~~~~ai~~l----~----~~RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~--~------~~hP~~~~~ 269 (331)
T PF00962_consen 206 PEHIRDAILLL----G----ADRIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGAVPS--Y------EEHPLRKLL 269 (331)
T ss_dssp HHHHHHHHHTS----T-----SEEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSST--G------GG-CHHHHH
T ss_pred cccccchhhhc----c----ceeecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccceeee--c------chhHHHHHH
Confidence 66555555431 2 24999999884 67799999999999999998654322110 1 236999999
Q ss_pred ccccccccc-ccccc
Q 010613 470 IIAVLVSIF-DGLFC 483 (506)
Q Consensus 470 ~~Gv~V~lG-D~~a~ 483 (506)
++|++|+++ |.+.-
T Consensus 270 ~~gv~v~i~TDd~~~ 284 (331)
T PF00962_consen 270 DAGVPVSINTDDPGV 284 (331)
T ss_dssp HTT-EEEE--BSHHH
T ss_pred HcCCceeccCCCccc
Confidence 999999999 98864
No 115
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=97.96 E-value=1.5e-05 Score=80.06 Aligned_cols=65 Identities=26% Similarity=0.524 Sum_probs=52.1
Q ss_pred ccEEEEcCEEEeCCCCC-ceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccccc
Q 010613 45 ADLVVTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (506)
Q Consensus 45 ~~~ii~n~~I~t~~~~~-~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~~~ 115 (506)
+.++|+|+.+|++-... -+..+|.|+||||+.-.+-. +..+.+||+.|+++|||=+|+|.|..+.
T Consensus 3 ~e~~IKNg~V~dPlngingE~MDI~vkdGKIVe~sev~------~~~aKVIDA~gklvm~GGvD~HsHvAG~ 68 (575)
T COG1229 3 MEILIKNGIVYDPLNGINGEKMDICVKDGKIVEESEVS------ESKAKVIDASGKLVMPGGVDSHSHVAGA 68 (575)
T ss_pred ceEEeecCEEecCccCCCCceeeEEeecCeEeeecccc------cccceEEeccCcEEecCccccccccccc
Confidence 46799999999986443 35669999999998753321 2357999999999999999999999754
No 116
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=97.89 E-value=2.6e-05 Score=78.88 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccC--ChhHHHHHHhCCCEEEec
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQ 439 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i--~~~~i~r~a~lgv~~s~~ 439 (506)
.+.++.+.++.+.++++|+.+.+||.+...-+.+.+++.-... -+|.|+..+ +++.+.++++.+|.+.+|
T Consensus 181 ~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~--------~rI~HGi~~~~d~~L~~~l~~~qI~levC 252 (345)
T COG1816 181 GYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGA--------ERIGHGIRAIEDPELLYRLAERQIPLEVC 252 (345)
T ss_pred cCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhch--------hhhccccccccCHHHHHHHHHhCCeeEEC
Confidence 3578899999999999999999999854444455555543321 278899887 567889999999999999
Q ss_pred chhHhhhhhcCccccccccccccccccchhccccccccc-ccccc
Q 010613 440 VWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 440 P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
|.++.- ++.-..-..-|+++++++|++|++. |.|+-
T Consensus 253 P~SNi~--------~~~v~~~~~hPf~~~~d~Gv~VsLnTDdp~~ 289 (345)
T COG1816 253 PLSNIQ--------LGVVPSLAKHPFKKLFDAGVKVSLNTDDPLY 289 (345)
T ss_pred Ccchhh--------cccccchhhCcHHHHHHcCCceEEcCCChhh
Confidence 987521 1111011246999999999999999 98863
No 117
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=97.88 E-value=0.00029 Score=71.39 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
.++.++++++++.|+++|+++++|+.... +.++.+.+ .|. ..++|. .+.+.++.+++.|+.+++.+.
T Consensus 159 ~~~~~~~~~iv~~A~~~gl~vasH~d~~~------~~v~~a~~-~Gv----~~~E~p--~t~e~a~~a~~~G~~vv~gap 225 (325)
T cd01306 159 AYAPANRSELAALARARGIPLASHDDDTP------EHVAEAHE-LGV----VISEFP--TTLEAAKAARELGLQTLMGAP 225 (325)
T ss_pred hcCHHHHHHHHHHHHHCCCcEEEecCCCh------HHHHHHHH-CCC----eeccCC--CCHHHHHHHHHCCCEEEecCc
Confidence 35678999999999999999999986432 12222222 243 245665 689999999999999998653
Q ss_pred hHhhhhhcCccccccccccccccccchhccccccccc-ccc
Q 010613 442 TTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGL 481 (506)
Q Consensus 442 ~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~ 481 (506)
. .+ +-+. ..+..++.+++++|+.+++| |..
T Consensus 226 n-----~l---rg~s--~~g~~~~~~ll~~Gv~~al~SD~~ 256 (325)
T cd01306 226 N-----VV---RGGS--HSGNVSARELAAHGLLDILSSDYV 256 (325)
T ss_pred c-----cc---cCcc--ccccHhHHHHHHCCCeEEEEcCCC
Confidence 2 11 1111 23567889999999999999 864
No 118
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=97.86 E-value=0.00097 Score=68.39 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHH---HHhCC--CEEEecchhHhh
Q 010613 373 MASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAAR---FGDQG--IVASMQVWTTFW 445 (506)
Q Consensus 373 ~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r---~a~lg--v~~s~~P~~~~~ 445 (506)
..+...+.++.+|+. +..+..++...+ .. +.|..|.|... .+.++. .++.| |.+.+||.+.++
T Consensus 119 ~~~~~~~~p~~~~~e-~~~~~~~l~la~----~~---g~~lhi~HiSt--~~~~~~i~~ak~~g~~vt~ev~phhL~l 186 (344)
T cd01316 119 FNAWPSTKPIVTHAK-SQTLAAVLLLAS----LH---NRSIHICHVSS--KEEINLIRLAKARGLKVTCEVSPHHLFL 186 (344)
T ss_pred HHhcccCCCeEEehh-hHHHHHHHHHHH----HH---CCCEEEEeCCC--HHHHHHHHHHHHCCCcEEEEechHHeec
Confidence 345556888999974 333333333322 22 44778888774 444444 44455 788999998754
No 119
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.42 E-value=0.0017 Score=64.92 Aligned_cols=113 Identities=11% Similarity=-0.006 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeeccc-hHHHHHHHHHHHHHHhcCCCCCCceEeecc-cCChhHHHHHHhCCCEEEecc
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASGTAARFGDQGIVASMQV 440 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~Gd-~av~~~l~a~e~~~~~~g~~~~r~~i~H~~-~i~~~~i~r~a~lgv~~s~~P 440 (506)
...+.|++.++.|++.|.+|++|+-.. .+.+..++.+.+ .|....+..+.||. .-+.++++++.+.|+.++++.
T Consensus 133 ~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~----~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~ 208 (293)
T cd00530 133 LEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEE----EGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDG 208 (293)
T ss_pred HHHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHH----cCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCC
Confidence 356789999999999999999998642 355555554432 35444567899998 467899999999999998874
Q ss_pred hhHhhhhhcCccccccccccccccccchhcccc--ccccc-ccccccc
Q 010613 441 WTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAV--LVSIF-DGLFCYM 485 (506)
Q Consensus 441 ~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv--~V~lG-D~~a~~~ 485 (506)
...+.... ..+. .....-++++++.|. ++.++ |.+...+
T Consensus 209 ~~~~~~~~----~~~~--~~~~~~l~~~~~~~~~d~ill~TD~p~~~~ 250 (293)
T cd00530 209 IGKDKIFG----YPSD--ETRADAVKALIDEGYGDRLLLSHDVFRKSY 250 (293)
T ss_pred CCcccccC----CCCH--HHHHHHHHHHHHCCCcCCEEEeCCcCchhh
Confidence 32110000 0000 001223667777876 77899 9886433
No 120
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=97.38 E-value=0.00036 Score=74.40 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=72.9
Q ss_pred CHHHHHHHHH-HHHHCCCeEEEeeccch-----HHHHHHHHHHHHHHhcCCCCCCceEeecccCC--hhHHHHHHhCCCE
Q 010613 364 ELESLLSMTM-ASDKSGLQVAIHAIGDR-----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIV 435 (506)
Q Consensus 364 s~e~l~~~~~-~a~~~g~~v~iHa~Gd~-----av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~--~~~i~r~a~lgv~ 435 (506)
+...+..... .+++.|+++.+||-+.. ....+.|++ .. | --||-|+..+. |+-++++++.+|.
T Consensus 304 pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lL----g----~~RIGHG~~l~~~P~l~~~vke~~I~ 374 (479)
T TIGR01431 304 SLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LL----N----TTRIGHGFALVKHPLVLQMLKERNIA 374 (479)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-Hc----C----CccccCcccccCCHHHHHHHHHhCCe
Confidence 4556655555 44459999999996422 234455555 21 2 24999999995 8899999999999
Q ss_pred EEecchhHhhhhhcCccccccccccccccccchhccccccccc-ccccc
Q 010613 436 ASMQVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 436 ~s~~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
+.+||.++....... . . ..-|++.++++||+|+++ |.|+-
T Consensus 375 lEvCP~SN~~l~~v~------~-~-~~HPl~~lla~Gvpv~InSDDP~~ 415 (479)
T TIGR01431 375 VEVNPISNQVLQLVA------D-L-RNHPCAYLFADNYPMVISSDDPAF 415 (479)
T ss_pred EEECccchhhhcccC------C-c-ccChHHHHHHCCCcEEEeCCCccc
Confidence 999999864322111 0 1 235899999999999999 98864
No 121
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0045 Score=63.17 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEeeccc---h-HHHHHHHHHHHHHHhcCCCCCCceEeecccCChhH--HHHHHhCCCEEEe
Q 010613 365 LESLLSMTMASDKSGLQVAIHAIGD---R-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT--AARFGDQGIVASM 438 (506)
Q Consensus 365 ~e~l~~~~~~a~~~g~~v~iHa~Gd---~-av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~--i~r~a~lgv~~s~ 438 (506)
...+......+.+.|+.+.+||-+- . -++.+||.+ + -.||-|+..+.++. +.++++.++.+.+
T Consensus 226 ~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD~l-------~----~~RIGHG~~l~~dp~L~~~~k~~nI~lEi 294 (399)
T KOG1097|consen 226 LSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALDLL-------G----TERIGHGYFLTKDPELINLLKSRNIALEI 294 (399)
T ss_pred hhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHHhh-------C----CccccCceeccCCHHHHHHHHhcCceEEE
Confidence 4456666666777999999999643 2 333444411 1 35999999998777 9999999999999
Q ss_pred cchhHhhhhhcCccccccccccccccccchhccccccccc-ccccc
Q 010613 439 QVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 439 ~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
||.++.... .+.. -..-|+.++++.|++++|. |.|+.
T Consensus 295 CP~SN~vl~------~v~d--~rnhp~~~~~~~~vP~vI~sDDP~~ 332 (399)
T KOG1097|consen 295 CPISNQVLG------LVSD--LRNHPVARLLAAGVPVVINSDDPGF 332 (399)
T ss_pred ccchhhhee------cccc--ccccHHHHHHhCCCCEEEeCCCccc
Confidence 998853211 1111 1346999999999999999 98864
No 122
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.0048 Score=59.23 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=44.6
Q ss_pred EEEEcCEEEeCCCCCceecEEEEECCEEEEEeCchhhhhhhcCCCeEEEcCCCeeeccccccccccc
Q 010613 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (506)
Q Consensus 47 ~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~~~~~~~~~~~~viD~~g~~v~PGfiD~H~H~~ 113 (506)
+.|.|.+|+-.. ....+.+-|+||||+.-.+-- -.......+.||++|+++.|||||..+..+
T Consensus 14 lQFtNCrilR~g--~l~~edlWVR~GRIldpe~vF--FeErt~Ad~riDCgG~IlaPGfIDlQiNGG 76 (407)
T KOG3892|consen 14 LQFTNCRILRGG--KLLREDLWVRGGRILDPEKVF--FEERTVADERIDCGGRILAPGFIDLQINGG 76 (407)
T ss_pred eeeeeeEEeeCC--ceeehheeEeCCeecCccccc--ceeccchhheeccCCeeecCceEEEEecCc
Confidence 568888887754 345678999999997432110 000112457899999999999999998865
No 123
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=96.33 E-value=0.35 Score=49.37 Aligned_cols=165 Identities=12% Similarity=0.061 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCC-eeEEEEccCc----c-chhhHHHHHHhcCC
Q 010613 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKM-KIRVCLFFPL----E-TWSSLADLINKTGH 321 (506)
Q Consensus 248 ~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l-~~Rv~~~~~~----~-~~~~~~~~~~~~~~ 321 (506)
.+....+.+.+.| |++.||....+.. .....+.+....+.+ .. +.|+..+... . ..+++.++.+
T Consensus 18 ~~~~~~~aa~~gG-Ttvv~mpnt~P~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~el~~~~~---- 87 (335)
T cd01294 18 MLKLVLPYTARGF-SRAIVMPNLKPPV---TTTADALAYRERILA--ADPGPNFTPLMTLYLTENTTPEELREAKK---- 87 (335)
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCCCC---CCHHHHHHHHHHHHh--cCCCCcEEEEEEEeccCCCCHHHHHHHHH----
Confidence 3445667789999 9999986321111 111212122222322 22 4565532211 1 1122323221
Q ss_pred cCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchH-H------HH
Q 010613 322 VLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-N------DL 394 (506)
Q Consensus 322 ~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~a-v------~~ 394 (506)
...+.|+|+|..+... + .+....+.+.+.++.+.+.+.|.+|.+|+..... . ..
T Consensus 88 ----~~G~~g~Klf~~~~~~--------~-------~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~ 148 (335)
T cd01294 88 ----KGGIRGVKLYPAGATT--------N-------SQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAK 148 (335)
T ss_pred ----hCCceEEEEecCCCcc--------C-------CCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHH
Confidence 1245689988643210 0 0111234578999999999999999999854321 0 01
Q ss_pred HHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhC--CCEEEecchhHhh
Q 010613 395 VLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ--GIVASMQVWTTFW 445 (506)
Q Consensus 395 ~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~l--gv~~s~~P~~~~~ 445 (506)
.+..+....++++ +.|..|.|+. +.+.++.+++. +|++.+||.+.+.
T Consensus 149 ~~~~~~~lA~~~p--~~~v~i~Hvs--t~~~~~~i~~ak~~vt~Et~ph~L~l 197 (335)
T cd01294 149 FIPVLEPLAQRFP--KLKIVLEHIT--TADAVEYVKSCNENVAATITPHHLLL 197 (335)
T ss_pred HHHHHHHHHHHcC--CCeEEEeccc--HHHHHHHHHhCCCCcEEEEchhHhee
Confidence 1111222223332 4578899986 57777777655 5999999998754
No 124
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=95.61 E-value=0.004 Score=61.15 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=24.5
Q ss_pred ccccccchhccccccccc-cccccccccCCCCCcchhhHHHhh
Q 010613 461 FRYTIGPIHIIAVLVSIF-DGLFCYMLVTCRPRNNFSYIFTIF 502 (506)
Q Consensus 461 ~~~pi~~~~~~Gv~V~lG-D~~a~~~~~~~~~~~~~~~~~~~~ 502 (506)
...++..++++|+.+.+| |.+..+.. .+-..+..++.++
T Consensus 225 ~~~~~~~l~~~Gv~~~l~sD~~~~~~~---~~~~~~~~~~~~~ 264 (304)
T PF13147_consen 225 DRAALRELLEAGVPVALGSDHAPSSTE---GSGDLLHEAMRLA 264 (304)
T ss_dssp HHHHHHHHHHTTSSEEEEE-BBTTTTT---CTTTHHHHHHHHH
T ss_pred hhHHHHHHHhCCCeEEEEcCCcccccc---cccccchhhhhHH
Confidence 356778999999999999 97754222 3344444444443
No 125
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=95.21 E-value=0.42 Score=48.17 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEccCc----cch------hhHHHH
Q 010613 246 REALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPL----ETW------SSLADL 315 (506)
Q Consensus 246 ~~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~~~----~~~------~~~~~~ 315 (506)
.+....-++.+.+.|..++.|+... ...+ +. +.++++.++-.+.+=....+.. +.+ +.+.+.
T Consensus 37 ~~~~~~El~~~k~~Gg~tiVd~T~~----g~GR---d~-~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~ 108 (308)
T PF02126_consen 37 VEAAVAELKEFKAAGGRTIVDATPI----GLGR---DV-EALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADL 108 (308)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SG----GGTB----H-HHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCc----ccCc---CH-HHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHH
Confidence 3444445667788999999998731 1112 22 5567766544444433322211 111 112221
Q ss_pred -HHhc-CCcCCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HH
Q 010613 316 -INKT-GHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-AN 392 (506)
Q Consensus 316 -~~~~-~~~~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av 392 (506)
+.+. .--...-++.+-||...+.. . ........+++..+...+-|.++++|+.... .-
T Consensus 109 ~i~Ei~~GidgT~ikaG~Ik~~~~~~--~-----------------it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~ 169 (308)
T PF02126_consen 109 FIREIEEGIDGTGIKAGIIKEIGSSN--P-----------------ITPLEEKVLRAAARAHKETGAPISTHTGRGTRMG 169 (308)
T ss_dssp HHHHHHT-STTSSB-ESEEEEEEBTT--B-----------------CEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCH
T ss_pred HHHHHHhcCCCCccchhheeEeeccC--C-----------------CCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCH
Confidence 1111 11113447788888654331 1 1112356677777888889999999997554 44
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEeecccCCh-hHHHHHHhCCCEEEe
Q 010613 393 DLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQGIVASM 438 (506)
Q Consensus 393 ~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~-~~i~r~a~lgv~~s~ 438 (506)
.+.++.++ +.|....|..+.|+....+ +.+..+++.|+.+++
T Consensus 170 ~e~~~il~----e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~ 212 (308)
T PF02126_consen 170 LEQLDILE----EEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEF 212 (308)
T ss_dssp HHHHHHHH----HTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHH----HcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEe
Confidence 45556554 4577677999999995543 678899999999987
No 126
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=95.09 E-value=0.7 Score=47.41 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCC-eeEEEEccCc--cchhhHHHHHHhcCCcC
Q 010613 247 EALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKM-KIRVCLFFPL--ETWSSLADLINKTGHVL 323 (506)
Q Consensus 247 ~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l-~~Rv~~~~~~--~~~~~~~~~~~~~~~~~ 323 (506)
..+..+.--+.+.|||++.||....+... . .+.+..+.+..++... .+|+..+... .......++....
T Consensus 17 ~~~~~~~~~~~~~~vt~vv~mPnt~P~~~---~-~e~~~~~~~~~~~~s~~~vDf~~~~~v~~~~~~~~~Ei~~l~---- 88 (341)
T TIGR00856 17 GAMLKAVLPYTSEIFSRAIVMPNLAPPVT---T-VEAAVAYRERILDAVPAGHDFTPLMTLYLTDSLTPEELERAK---- 88 (341)
T ss_pred chHHHHHHHHHHhhcCEEEECCCCCCCCC---C-HHHHHHHHHHHHhhCCCCcceEEEEEEECCCCCCHHHHHHHH----
Confidence 35556666678889999999863222111 1 1221222222222212 2455533222 1111223322110
Q ss_pred CCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccch-HH-------HHH
Q 010613 324 SDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-AN-------DLV 395 (506)
Q Consensus 324 ~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~-av-------~~~ 395 (506)
..+.+.|+|+|..+. .|. .+....+.+.+.++.+.|.+.|.++.+|+.... .+ ..+
T Consensus 89 -~~~Gv~g~Klf~~~~----------~~~-----~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~ 152 (341)
T TIGR00856 89 -NEGVVRAVKLYPAGA----------TTN-----SSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFI 152 (341)
T ss_pred -HcCCeEEEEEccCCc----------ccC-----CCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhh
Confidence 012466889886531 121 012233567899999999999999999985320 11 111
Q ss_pred HHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHh--CCCEEEecchhHhh
Q 010613 396 LDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGD--QGIVASMQVWTTFW 445 (506)
Q Consensus 396 l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~--lgv~~s~~P~~~~~ 445 (506)
...++....+.+ +.+..+.|.. +.+-++.+++ ..|.+.+||.+.+.
T Consensus 153 ~~~i~~lA~~~~--~~~~~i~H~s--t~~~~~~i~~a~~~vt~E~~ph~L~l 200 (341)
T TIGR00856 153 ESVLEPLRQRFP--ALKVVLEHIT--TKDAIDYVEDGNNRLAATITPQHLMF 200 (341)
T ss_pred HHHHHHHHHHcc--CCeEEEEecC--cHHHHHHHHHcCCCEEEEEcHHHHhc
Confidence 112222222222 4577888876 4555555543 34889999998754
No 127
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=94.83 E-value=0.82 Score=44.15 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
..+.+++.++.|.+.|++|.+|+.+ +...+++.+++ .| ..+..+.|+..-+.+.+..+.+.|+.+++.+.
T Consensus 106 q~~~~~~~~~~a~~~~~pv~iH~~~--~~~~~~~~l~~----~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~ 175 (252)
T TIGR00010 106 QEEVFRAQLQLAEELNLPVIIHARD--AEEDVLDILRE----EK--PKVGGVLHCFTGDAELAKKLLDLGFYISISGI 175 (252)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecC--ccHHHHHHHHh----cC--CCCCEEEEccCCCHHHHHHHHHCCCeEeecee
Confidence 3578889899999999999999875 33345555543 33 23567889987778899999999999998764
No 128
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=94.34 E-value=0.078 Score=57.69 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=63.7
Q ss_pred HHHHHCCCe---EEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCC--hhHHHHHHhCCCEEEecchhHhhhh
Q 010613 373 MASDKSGLQ---VAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQVWTTFWQS 447 (506)
Q Consensus 373 ~~a~~~g~~---v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~--~~~i~r~a~lgv~~s~~P~~~~~~~ 447 (506)
..-.++|+. +..||.+....+.+.+++ . + -.+|.|+..+. +....++.+.+|.+++||.++. .
T Consensus 429 ~~R~~rGLnt~~LrpHaGEag~~e~l~~A~--L----~----adRIgHGi~l~~dp~L~yl~~~~qI~LevCPtSN~--~ 496 (611)
T TIGR01429 429 NFRRERGLNTFLLRPHCGEAGSVDHLVSAF--L----T----SHGINHGILLRKVPVLQYLYYLTQIPIAMSPLSNN--S 496 (611)
T ss_pred HHHHHcCCCccceeecCCCCCCHHHHHHHh--h----c----CcccccceecCCCHHHHHHHHHcCCeEEEcCCcch--h
Confidence 334455655 899997655555555554 1 1 35899999984 5566677899999999999853 1
Q ss_pred hcCccccccccccccccccchhccccccccc-ccccc
Q 010613 448 IVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 448 ~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
.+. .-.--|+++++++|++|++. |.|.-
T Consensus 497 l~~--------~y~~HP~~~~~~~Gl~VSLsTDDPl~ 525 (611)
T TIGR01429 497 LFL--------EYSKNPLPEYLHKGLNVSLSTDDPLQ 525 (611)
T ss_pred hcc--------ChhhChHHHHHHCCCeEEEcCCCchh
Confidence 110 01235999999999999999 98863
No 129
>PLN02599 dihydroorotase
Probab=93.95 E-value=2.8 Score=43.34 Aligned_cols=78 Identities=12% Similarity=0.165 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeecc-ch----HHHH---HHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHh--C-
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIG-DR----ANDL---VLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGD--Q- 432 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~G-d~----av~~---~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~--l- 432 (506)
+.+.+.++++.+.+.|.++.+|+.- +. ..++ +...++....+. .+.+..++|.. +.+-++.+++ .
T Consensus 134 d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~~--~g~kI~i~HiS--t~~~ve~v~~ak~~ 209 (364)
T PLN02599 134 DLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKL--PQLKIVMEHIT--TMDAVEFVESCGDG 209 (364)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHhc--cCCeEEEEecC--hHHHHHHHHhccCC
Confidence 5689999999999999999999863 11 0111 112232223333 25678888886 4455554433 3
Q ss_pred CCEEEecchhHhh
Q 010613 433 GIVASMQVWTTFW 445 (506)
Q Consensus 433 gv~~s~~P~~~~~ 445 (506)
.|.+.+||.|.+.
T Consensus 210 ~vtae~tpHhL~l 222 (364)
T PLN02599 210 NVAATVTPQHLLL 222 (364)
T ss_pred CEEEEecHHHHhc
Confidence 6899999998754
No 130
>PRK09875 putative hydrolase; Provisional
Probab=93.76 E-value=0.77 Score=45.96 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeecc-chHHHHHHHHHHHHHHhcCCCCCCceEeecccC-ChhHHHHHHhCCCEEEec
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIG-DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL-ASGTAARFGDQGIVASMQ 439 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~G-d~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i-~~~~i~r~a~lgv~~s~~ 439 (506)
..+.|++.++.+.+-|.++.+|... +.+.+ .++.+ ++.|....|..|.|+... +++.+..+++.|+.+.+.
T Consensus 137 E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e-~l~il----~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD 209 (292)
T PRK09875 137 EEKVFIAAALAHNQTGRPISTHTSFSTMGLE-QLALL----QAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFD 209 (292)
T ss_pred HHHHHHHHHHHHHHHCCcEEEcCCCccchHH-HHHHH----HHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEec
Confidence 3566777788888999999999753 33333 34543 445777779999999755 568999999999999985
No 131
>PLN03055 AMP deaminase; Provisional
Probab=93.33 E-value=0.081 Score=57.38 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=63.1
Q ss_pred HHHHCCC---eEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccC--ChhHHHHHHhCCCEEEecchhHhhhhh
Q 010613 374 ASDKSGL---QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQVWTTFWQSI 448 (506)
Q Consensus 374 ~a~~~g~---~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i--~~~~i~r~a~lgv~~s~~P~~~~~~~~ 448 (506)
.-+++|+ .+..||.+....+.+.+++ .+ -.+|.|+..+ +|.-+.++.+.+|.+.+||.++.- .
T Consensus 408 lR~~rglnT~~~rpHAGEag~~~~v~~al------L~----a~RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~--l 475 (602)
T PLN03055 408 LRESKGLNTIKFRPHAGEAGDIDHLAAAF------LL----AHNIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNS--L 475 (602)
T ss_pred HHHHcCCCCCCccccCCCCCCHHHHHHHh------hC----CceecCccccCCCHHHHHHHHHcCCeEEEccCcchh--h
Confidence 3345554 5689987544444444443 12 3589999988 577888999999999999998531 1
Q ss_pred cCccccccccccccccccchhccccccccc-ccccc
Q 010613 449 VNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 449 ~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
+. .-..-|++.++++|++|+|. |.|.-
T Consensus 476 ~~--------~y~~HP~~~~~~~Gl~VSInTDDPl~ 503 (602)
T PLN03055 476 FL--------DYHRNPFPMFFARGLNVSLSTDDPLQ 503 (602)
T ss_pred cc--------chhhChHHHHHHCCCEEEEcCCCcch
Confidence 10 01246999999999999999 98864
No 132
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=93.08 E-value=0.11 Score=55.51 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=63.2
Q ss_pred HHHHHCC---CeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCCh--hHHHHHHhCCCEEEecchhHhhhh
Q 010613 373 MASDKSG---LQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS--GTAARFGDQGIVASMQVWTTFWQS 447 (506)
Q Consensus 373 ~~a~~~g---~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~--~~i~r~a~lgv~~s~~P~~~~~~~ 447 (506)
..-+++| +.+..||.+....+.+.+++ . + -.+|.|+..+.+ ....++.+.+|.+.+||.++.-
T Consensus 317 ~~R~~rglntf~~r~HaGE~g~~~~l~~al--L----~----adRIGHGv~l~~dp~L~~l~~~~qI~levCPlSN~~-- 384 (496)
T cd01319 317 SFRKARGFNTFVLRPHCGEAGDIDHLASAF--L----L----AHGISHGINLRKVPVLQYLYYLTQIGIAMSPLSNNS-- 384 (496)
T ss_pred HHHHHcCCCCcceeeecCCCCChHHHHHHh--h----c----CcccccccccCCCHHHHHHHHHcCCeEEEecCccHh--
Confidence 3334555 47899998665566666555 1 1 258999999854 4445667899999999998531
Q ss_pred hcCccccccccccccccccchhccccccccc-ccccc
Q 010613 448 IVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 448 ~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
.+. + . .--|++.+++.|++|+|. |.|..
T Consensus 385 l~~----~---~-~~HP~~~~l~~Gl~VsInTDDPl~ 413 (496)
T cd01319 385 LFL----S---Y-EKNPFPEFFKRGLNVSLSTDDPLQ 413 (496)
T ss_pred hhc----C---c-ccChHHHHHHCCCeEEEeCCCchh
Confidence 100 0 1 235999999999999999 98863
No 133
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=92.10 E-value=0.54 Score=46.05 Aligned_cols=74 Identities=22% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
...+.|++.++.|.++++++.+|+-+ +.+.+++.+.+... .. .-.+-|+..-+.++++++.++|+.+|+.+..
T Consensus 108 ~Q~~vF~~ql~lA~~~~~pv~iH~r~--a~~~~l~il~~~~~----~~-~~~i~H~f~g~~~~~~~~~~~g~~~S~~~~~ 180 (255)
T PF01026_consen 108 VQEEVFERQLELAKELNLPVSIHCRK--AHEELLEILKEYGP----PN-LRVIFHCFSGSPEEAKKFLDLGCYFSFSGAI 180 (255)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEES--HHHHHHHHHHHTTG----GT-SEEEETT--S-HHHHHHHHHTTEEEEEEGGG
T ss_pred HHHHHHHHHHHHHHHhCCcEEEecCC--cHHHHHHHHHhccc----cc-eeEEEecCCCCHHHHHHHHhcCceEEecccc
Confidence 34678899999999999999999987 66777777765431 11 1589999999999999999999999998875
Q ss_pred H
Q 010613 443 T 443 (506)
Q Consensus 443 ~ 443 (506)
.
T Consensus 181 ~ 181 (255)
T PF01026_consen 181 T 181 (255)
T ss_dssp G
T ss_pred c
Confidence 3
No 134
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=91.71 E-value=0.4 Score=40.27 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=29.3
Q ss_pred cccEEEEcCEEEeCCCCCceecEEEEECCEEEEEeCch
Q 010613 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYS 81 (506)
Q Consensus 44 ~~~~ii~n~~I~t~~~~~~~~~av~I~~g~I~~vg~~~ 81 (506)
..|++|+|+-|++.. .....+|.|+||||+.||...
T Consensus 65 ~lD~VItNa~IiD~~--GI~KADIGIkdG~I~gIGkAG 100 (121)
T PF00449_consen 65 ALDLVITNALIIDYT--GIVKADIGIKDGRIVGIGKAG 100 (121)
T ss_dssp C-SEEEEEEEEEETT--EEEEEEEEEETTEEEEEE-EB
T ss_pred cccEEEeCcEEEecC--CcEEeeEEeeCCEEEEEeccC
Confidence 679999999999984 346789999999999999753
No 135
>PRK10425 DNase TatD; Provisional
Probab=91.39 E-value=0.8 Score=44.99 Aligned_cols=71 Identities=8% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 365 ~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
.+.|++.++.|.++++|+.+|+-+ |.+.+++.+++.. . .....+.||..-+.+.++++.++|..+++.+..
T Consensus 107 ~~vF~~ql~lA~~~~~Pv~iH~r~--a~~~~l~iL~~~~----~-~~~~~i~H~fsG~~~~~~~~l~~G~~~si~g~i 177 (258)
T PRK10425 107 ERAFVAQLAIAAELNMPVFMHCRD--AHERFMALLEPWL----D-KLPGAVLHCFTGTREEMQACLARGLYIGITGWV 177 (258)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeC--chHHHHHHHHHhc----c-CCCCeEEEecCCCHHHHHHHHHCCCEEEECcee
Confidence 578899999999999999999973 5566777665421 1 112377899999999999999999999998753
No 136
>PLN02768 AMP deaminase
Probab=91.23 E-value=0.19 Score=55.88 Aligned_cols=88 Identities=14% Similarity=0.058 Sum_probs=61.7
Q ss_pred HHCCC---eEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCC--hhHHHHHHhCCCEEEecchhHhhhhhcC
Q 010613 376 DKSGL---QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQVWTTFWQSIVN 450 (506)
Q Consensus 376 ~~~g~---~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~--~~~i~r~a~lgv~~s~~P~~~~~~~~~~ 450 (506)
+++|+ .+..||-+....+.+.+++ . + -.+|.|+..+. +.-+.++...+|.+++||.++.. .+.
T Consensus 643 ~~rGlNTf~fRPHAGEag~~e~I~~Al--L----~----AdRIgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~~--l~~ 710 (835)
T PLN02768 643 ESKGMTTIKFRPHSGEAGDIDHLAATF--L----T----CHNIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNS--LFL 710 (835)
T ss_pred HHCCCCccccccccCCCCCHHHHHHHH--h----c----CCccCCccccCcCHHHHHHHHHcCCeEEECCCcchh--hhc
Confidence 34555 4789997544455555555 1 1 24888999883 56666888999999999998531 110
Q ss_pred ccccccccccccccccchhccccccccc-ccccc
Q 010613 451 PLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 451 ~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
.-..-|+++++++|++|+|. |.|.-
T Consensus 711 --------~y~~HPf~~f~~~GL~VSLNTDDPL~ 736 (835)
T PLN02768 711 --------DYHRNPFPMFFLRGLNVSLSTDDPLQ 736 (835)
T ss_pred --------chhhChHHHHHHCCCEEEEcCCCccc
Confidence 01246999999999999999 98863
No 137
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=90.76 E-value=11 Score=37.68 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecc-cCChh-HHHHHHhCCCEEEec
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASG-TAARFGDQGIVASMQ 439 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~-~i~~~-~i~r~a~lgv~~s~~ 439 (506)
.+..|+..++..++-|.|+++|..+..--.+.++. ..+.|..-.+..|.||. .-+|- -.+.|+.+|+.+++-
T Consensus 150 Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~i----l~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD 223 (316)
T COG1735 150 EEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRI----LAEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFD 223 (316)
T ss_pred HHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHH----HHHcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEec
Confidence 35667777777778899999999864422222333 34557766789999999 44443 445678889998753
No 138
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=90.76 E-value=1.3 Score=42.67 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
..+.++..++.|.+.|++|.+|+... .+.+++.+ ++++ ..+..+.|+..-+.+.++++.+.|+.+++.+..
T Consensus 106 q~~~~~~~~~~a~e~~~pv~iH~~~~--~~~~~~l~----~~~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~ 176 (251)
T cd01310 106 QKEVFRAQLELAKELNLPVVIHSRDA--HEDVLEIL----KEYG--PPKRGVFHCFSGSAEEAKELLDLGFYISISGIV 176 (251)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHH----HhcC--CCCCEEEEccCCCHHHHHHHHHcCCEEEeeeee
Confidence 45788999999999999999998642 33444444 3344 235677788877778999999999999988753
No 139
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=90.32 E-value=1.2 Score=43.59 Aligned_cols=72 Identities=21% Similarity=0.173 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchhH
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWTT 443 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~~ 443 (506)
..+.|++.++.|.+.++|+.+|+=+ |.+.+++.+++. +. .+-.+-||..-+.++.+++-++|..+|+.+...
T Consensus 110 Q~~~F~~ql~lA~~~~lPviIH~R~--A~~d~~~iL~~~----~~--~~~gi~HcFsGs~e~a~~~~d~G~yisisG~it 181 (256)
T COG0084 110 QEEVFEAQLELAKELNLPVIIHTRD--AHEDTLEILKEE----GA--PVGGVLHCFSGSAEEARKLLDLGFYISISGIVT 181 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccc--cHHHHHHHHHhc----CC--CCCEEEEccCCCHHHHHHHHHcCeEEEECceee
Confidence 4688999999999999999999865 555666665543 21 356899999999999999999999999987653
No 140
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=89.97 E-value=1.2 Score=43.90 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
..+.|++.++.|.+++.+|.+|+-+ |.+.+++.+.+ ++. .+..+-||..-+.++.+++-++|..+|+.+..
T Consensus 112 Q~~vf~~ql~lA~~~~~Pv~iH~r~--a~~~~~~il~~----~~~--~~~~i~H~fsG~~~~a~~~l~~G~~iS~~g~i 182 (258)
T PRK11449 112 QQWLLDEQLKLAKRYDLPVILHSRR--THDKLAMHLKR----HDL--PRTGVVHGFSGSLQQAERFVQLGYKIGVGGTI 182 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecC--ccHHHHHHHHh----cCC--CCCeEEEcCCCCHHHHHHHHHCCCEEEeCccc
Confidence 4688999999999999999999975 55566665543 332 23579999999999999999999999997754
No 141
>PTZ00310 AMP deaminase; Provisional
Probab=88.88 E-value=0.39 Score=56.68 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHCCC---eEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccC--ChhHHHHHHhCCCEEEecc
Q 010613 366 ESLLSMTMASDKSGL---QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQV 440 (506)
Q Consensus 366 e~l~~~~~~a~~~g~---~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i--~~~~i~r~a~lgv~~s~~P 440 (506)
.-+..+=..-+++|+ .+..||-+....+.+.+++- + -.+|.|+..+ +|..+.++...+|.+.+||
T Consensus 1093 aNi~~LN~~R~~rglnTf~~rpHAGEag~~~hI~~AlL------~----a~RIgHGi~l~~dp~L~yl~~l~qI~LevCP 1162 (1453)
T PTZ00310 1093 ANIRTLNEFRASRGFSTFALRPHCGESGSMDHLYGAFL------C----ANSICHGINLRNDPPMQYLYYLAQIGLHVSP 1162 (1453)
T ss_pred HHHHHHHHHHHHCCCCCcCccccCCCCCCHHHHHHHHh------C----CccccchhhhCcCHHHHHHHHHcCCeEEECC
Confidence 333333344445666 67899975545555555551 2 2589999998 4666778999999999999
Q ss_pred hhHhhhhhcCccccccccccccccccchhccccccccc-ccccc
Q 010613 441 WTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 441 ~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
.++.- .+. .-.--|++++++.|++|+|. |.|..
T Consensus 1163 lSN~~--l~~--------sy~~hP~~~f~~~Gl~VSLnTDDPl~ 1196 (1453)
T PTZ00310 1163 LSNNA--LFL--------AFLENPFPVFFHRGLNVSLSTDDPLM 1196 (1453)
T ss_pred CchHh--hhh--------chhhCcHHHHHHCCCEEEECCCCccc
Confidence 98531 110 01246999999999999999 99864
No 142
>PRK10812 putative DNAse; Provisional
Probab=88.35 E-value=2.4 Score=41.77 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
..+.|++.++.|.+.|+++.+|+-+ +.+.+++.+++. +... .-.+.||..-+.+.++++.++|..+++.+.
T Consensus 109 Q~~vf~~ql~lA~e~~~Pv~iH~r~--a~~~~l~iL~~~----~~~~-~~~v~H~fsG~~~~a~~~~~~G~~is~~g~ 179 (265)
T PRK10812 109 QQESFRHHIQIGRELNKPVIVHTRD--ARADTLAILREE----KVTD-CGGVLHCFTEDRETAGKLLDLGFYISFSGI 179 (265)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeC--chHHHHHHHHhh----cCCC-CCEEEEeecCCHHHHHHHHHCCCEEEECee
Confidence 4678899999999999999999864 445666665432 2211 235789998888999999999999998753
No 143
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=87.98 E-value=0.18 Score=43.62 Aligned_cols=20 Identities=45% Similarity=1.016 Sum_probs=17.8
Q ss_pred CCeeeccccccccccccccc
Q 010613 98 GKVVVPGFIDSHVHFIPGGL 117 (506)
Q Consensus 98 g~~v~PGfiD~H~H~~~~g~ 117 (506)
|++++|||||.|+|+..+|.
T Consensus 1 ~kli~~g~vd~hVhlrepg~ 20 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREPGF 20 (142)
T ss_pred Cceeehhhhhhhhhhhcccc
Confidence 68999999999999987764
No 144
>PTZ00310 AMP deaminase; Provisional
Probab=80.45 E-value=1.8 Score=51.42 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHHHHCCCe---EEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCCh-hHHH-HHHhCCCEEEecchhHhhhh
Q 010613 373 MASDKSGLQ---VAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAA-RFGDQGIVASMQVWTTFWQS 447 (506)
Q Consensus 373 ~~a~~~g~~---v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~-~~i~-r~a~lgv~~s~~P~~~~~~~ 447 (506)
..-+++|+. +.-||..-..++..+.+|=- -.+|.|+..+.+ ..+. ++.+.+|.+++||.++..
T Consensus 470 ~lR~~RGlNTf~LRPhcgeag~~dhLv~~fLl----------adRI~HGi~l~d~p~LqyL~~e~qI~LeVCPlSN~~-- 537 (1453)
T PTZ00310 470 SLRKRKGLNTLQLRPSGEKAPAYDQLISSYLL----------GDVITRATSIADYPVLQYLCGLHRVGLTVSPLRDHA-- 537 (1453)
T ss_pred HHHHhCCCCeEEecCCCCCCCCHHHHHHHHHh----------hccccchhccCchHHHHHHHHHcCCeEEECCCcccc--
Confidence 334455654 56776654555666555422 248999988853 3444 445999999999998532
Q ss_pred hcCccccccccccccccccchhccccccccc-ccccc
Q 010613 448 IVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFC 483 (506)
Q Consensus 448 ~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~ 483 (506)
++. ..-.--|+++++++|++|++. |.|.-
T Consensus 538 ------l~v-~sy~~HPi~~fl~~GL~VSLNTDDPl~ 567 (1453)
T PTZ00310 538 ------LSI-TAYFDHPLPKFLHRCLRVSISTSDPLY 567 (1453)
T ss_pred ------cCC-CchhhCcHHHHHHCCCEEEECCCCccc
Confidence 111 011346999999999999999 99873
No 145
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=77.36 E-value=31 Score=35.17 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=59.7
Q ss_pred ccCCCHHHHHHHHHHHHHCC-CeEEEeeccc---hHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCE
Q 010613 360 LQVMELESLLSMTMASDKSG-LQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (506)
Q Consensus 360 ~~~~s~e~l~~~~~~a~~~g-~~v~iHa~Gd---~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~ 435 (506)
....+.|++.+.++.|++.| .++.+=+.|- +..+++.++++.+.++.|. ...+..+ .+++++.+.+++.|+.
T Consensus 81 ~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~l---e~c~slG-~l~~eq~~~L~~aGvd 156 (335)
T COG0502 81 RKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGL---EVCASLG-MLTEEQAEKLADAGVD 156 (335)
T ss_pred hhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCc---HHhhccC-CCCHHHHHHHHHcChh
Confidence 34678999999999999999 9998888764 7888899999888877764 4555556 7899999999999985
No 146
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=75.15 E-value=23 Score=35.31 Aligned_cols=96 Identities=16% Similarity=0.302 Sum_probs=66.3
Q ss_pred EceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeecc--------chHHHHHHH-HH
Q 010613 329 LGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIG--------DRANDLVLD-MY 399 (506)
Q Consensus 329 ~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~G--------d~av~~~l~-a~ 399 (506)
+.++|++--|... ....|+ -+-+.+....+..++.|+++.+|-.- |+.. ..++ .+
T Consensus 96 i~a~KlYPaGaTT-------------NS~~GV--~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~-~Fi~~vl 159 (344)
T COG0418 96 IRAVKLYPAGATT-------------NSDSGV--TDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREA-AFIESVL 159 (344)
T ss_pred EEEEEeccCCccc-------------cCcCCc--CcHHHHHHHHHHHHHcCCeEEEecccCCccccchhhHH-HHHHHHH
Confidence 4568877666522 112344 35778889999999999999999631 2332 2344 66
Q ss_pred HHHHHhcCCCCCCceEeecccCChhHHHHHHhCC--CEEEecchhHh
Q 010613 400 KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG--IVASMQVWTTF 444 (506)
Q Consensus 400 e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lg--v~~s~~P~~~~ 444 (506)
+..+++.| ..+..+||++ +.+-++.+++.+ +.+++.|.|.+
T Consensus 160 ~pl~~~fP--~LKIV~EHiT--T~dav~~v~~~~~nlaATIT~hHL~ 202 (344)
T COG0418 160 EPLRQRFP--KLKIVLEHIT--TKDAVEYVKDANNNLAATITPHHLL 202 (344)
T ss_pred HHHHhhCC--cceEEEEEec--cHHHHHHHHhcCcceeeEeehhhee
Confidence 66777766 5688999998 566777777776 78899998863
No 147
>PRK05451 dihydroorotase; Provisional
Probab=74.10 E-value=13 Score=38.10 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeecc-ch----H---HHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHh--CC
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIG-DR----A---NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGD--QG 433 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~G-d~----a---v~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~--lg 433 (506)
+.+.+.++++.+.+.|.++.+|+.- +. . ...+...++++.++.+ +.+..|.|+. +++-++.+++ .+
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~~lA~~~p--g~~lhI~Hls--t~~~~e~i~~a~~~ 191 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRFP--KLKIVFEHIT--TKDAVDYVREANDN 191 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHHHHHHhcC--CCcEEEEecC--cHHHHHHHHhcCCC
Confidence 6778999999999999999999853 11 0 0001112233333442 4678999986 5666666654 47
Q ss_pred CEEEecchhHhhh
Q 010613 434 IVASMQVWTTFWQ 446 (506)
Q Consensus 434 v~~s~~P~~~~~~ 446 (506)
|.+.+||.+.+..
T Consensus 192 it~Et~ph~L~l~ 204 (345)
T PRK05451 192 LAATITPHHLLIN 204 (345)
T ss_pred EEEEecHHHHhcC
Confidence 8889999987543
No 148
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=73.62 E-value=15 Score=35.08 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeecc---chHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCC--CEEEe
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIG---DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG--IVASM 438 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~G---d~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lg--v~~s~ 438 (506)
..+.|++.+++|+++++++.+|+-- -.+...+++.+. +.+.......|.|+. .+.++.+-+.+ +..++
T Consensus 112 E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~~----~~~l~~~lvvIDH~N---~etv~~vld~e~~vGlTv 184 (254)
T COG1099 112 EKEVFREQLELARELDVPVIVHTPRRNKKEATSKILDILI----ESGLKPSLVVIDHVN---EETVDEVLDEEFYVGLTV 184 (254)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHH----HcCCChhheehhccc---HHHHHHHHhccceEEEEe
Confidence 3567889999999999999999852 225555555443 346666788888876 47777555554 56789
Q ss_pred cchh
Q 010613 439 QVWT 442 (506)
Q Consensus 439 ~P~~ 442 (506)
||.-
T Consensus 185 qPgK 188 (254)
T COG1099 185 QPGK 188 (254)
T ss_pred cCCc
Confidence 9963
No 149
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=65.33 E-value=15 Score=35.43 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=42.8
Q ss_pred HHHHHHHHHCCCeEEEeec--c---chHHHHHHHHHHHHHHhcCCCCCCceEeecccC--C-hhHHHHHHhC-CCEEEe
Q 010613 369 LSMTMASDKSGLQVAIHAI--G---DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--A-SGTAARFGDQ-GIVASM 438 (506)
Q Consensus 369 ~~~~~~a~~~g~~v~iHa~--G---d~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i--~-~~~i~r~a~l-gv~~s~ 438 (506)
..+.+.|.++|+++.+|+. + ..........+..+..++| +.|..++|+... . .+-++++++. ++.+.+
T Consensus 120 ~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P--~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~ 196 (273)
T PF04909_consen 120 DPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLERFP--DLRIILAHLGGPFPWWEEALRLLDRFPNVYVDL 196 (273)
T ss_dssp HHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHHHST--TSEEEESGGGTTHHHHHHHHHHHHHHTTEEEEC
T ss_pred HHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHHHhc--CCeEEEecCcccchhHHHHHHHHHhCCcccccc
Confidence 6888999999999999953 1 1122223344555667776 579999999988 2 3344444544 355543
No 150
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=64.50 E-value=24 Score=35.30 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 365 ~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
...+++-+++|.+..+|+.+|+-- |.+.+++..++...+ -.+-.+.||..-+.++++++.+.++.+++++.+
T Consensus 134 k~vFekQl~LA~~~~~Pl~iH~r~--a~~d~~eIl~~~~~~----~~~~vvvHsFtGs~e~~~~~lk~~~yig~~g~~ 205 (296)
T KOG3020|consen 134 KTVFEKQLDLAKRLKLPLFIHCRS--AHEDLLEILKRFLPE----CHKKVVVHSFTGSAEEAQKLLKLGLYIGFTGCS 205 (296)
T ss_pred HHHHHHHHHHHHHccCCeeeechh--hhHHHHHHHHHhccc----cCCceEEEeccCCHHHHHHHHHccEEeccccee
Confidence 567889999999999999999864 666677776655332 223589999999999999999999888877755
No 151
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=64.25 E-value=40 Score=34.05 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCeEEE-eeccchHHHHHHHHHHHHHHhcCCCCCCceEeecc---------cCChhHHHHHHhCCCE
Q 010613 366 ESLLSMTMASDKSGLQVAI-HAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ---------HLASGTAARFGDQGIV 435 (506)
Q Consensus 366 e~l~~~~~~a~~~g~~v~i-Ha~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~---------~i~~~~i~r~a~lgv~ 435 (506)
+.=++++++.++.|+-+-+ |+ ++++...+++. . ..+..+.|.. .+++++++.+++.|-.
T Consensus 154 ~~G~~vv~~mn~lGmiiDvSH~-s~~~~~dv~~~---s-------~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGv 222 (309)
T cd01301 154 PFGKELVREMNRLGIIIDLSHL-SERTFWDVLDI---S-------NAPVIASHSNARALCDHPRNLTDAQLKAIAETGGV 222 (309)
T ss_pred HHHHHHHHHHHHcCCEEEcCCC-CHHHHHHHHHh---c-------CCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCE
Confidence 3566778888999999954 54 45555544443 2 1234555544 4799999999999987
Q ss_pred EEecc
Q 010613 436 ASMQV 440 (506)
Q Consensus 436 ~s~~P 440 (506)
+-++.
T Consensus 223 igi~~ 227 (309)
T cd01301 223 IGVNF 227 (309)
T ss_pred EEEee
Confidence 76543
No 152
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=58.24 E-value=6.2 Score=40.20 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.1
Q ss_pred eecccccccccccc
Q 010613 101 VVPGFIDSHVHFIP 114 (506)
Q Consensus 101 v~PGfiD~H~H~~~ 114 (506)
-+||+||.|+|+..
T Consensus 2 ~~Pg~iD~h~h~~~ 15 (335)
T cd01294 2 TIPRPDDMHLHLRD 15 (335)
T ss_pred cCCCcceeEecCCC
Confidence 37999999999863
No 153
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=57.06 E-value=51 Score=33.44 Aligned_cols=75 Identities=11% Similarity=0.164 Sum_probs=50.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeec-cc---hH----------------HHHHHHHHHHHHHhcCCCCCCceEeeccc
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAI-GD---RA----------------NDLVLDMYKSVVVTTGKRDQRFRIEHAQH 420 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~-Gd---~a----------------v~~~l~a~e~~~~~~g~~~~r~~i~H~~~ 420 (506)
...+.|++.+.++.+.+.|+.- +|.. |. .. .+...+.++...++.+. ..-.+...
T Consensus 33 ~~l~~eeI~~~a~~~~~~G~~e-i~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~----~~~~~~g~ 107 (322)
T TIGR03550 33 ALLSPEEVLEILRKGAAAGCTE-ALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGL----LPHTNPGV 107 (322)
T ss_pred ccCCHHHHHHHHHHHHHCCCCE-EEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCC----ccccCCCC
Confidence 3679999999999999999876 6665 32 11 23444444555444332 23456677
Q ss_pred CChhHHHHHHhCCCEEEecc
Q 010613 421 LASGTAARFGDQGIVASMQV 440 (506)
Q Consensus 421 i~~~~i~r~a~lgv~~s~~P 440 (506)
++++++++|++.|+...+.+
T Consensus 108 lt~e~l~~Lk~aG~~~~~~~ 127 (322)
T TIGR03550 108 MSRDELARLKPVNASMGLML 127 (322)
T ss_pred CCHHHHHHHHhhCCCCCcch
Confidence 89999999999986544433
No 154
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=55.44 E-value=48 Score=32.47 Aligned_cols=62 Identities=8% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHHHHHHHHC-CCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccC-ChhHHHHHHhCCCEEEecch
Q 010613 368 LLSMTMASDKS-GLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL-ASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 368 l~~~~~~a~~~-g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i-~~~~i~r~a~lgv~~s~~P~ 441 (506)
+...++.+++. ++++.+|+.....++.++++ | ...|.|.... +++-++.+++.|+.+...+.
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~--------G----~~iINsis~~~~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEA--------G----ADIINDVSGGQDPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc--------C----CCEEEECCCCCCchhHHHHHHcCCcEEEEeC
Confidence 77777888877 99999999876666665543 3 4589998887 77888899999887776553
No 155
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=54.96 E-value=17 Score=37.56 Aligned_cols=102 Identities=11% Similarity=-0.082 Sum_probs=70.3
Q ss_pred cCCCH-HHHHHHHHHHHHCCCeEEE-eeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEe
Q 010613 361 QVMEL-ESLLSMTMASDKSGLQVAI-HAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASM 438 (506)
Q Consensus 361 ~~~s~-e~l~~~~~~a~~~g~~v~i-Ha~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~ 438 (506)
+.+++ +.+.+++..|++.|.++++ |+.-. ..++.++++++ .|.....-...|+.+++++++.. +|....+
T Consensus 166 p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~----~~l~~i~~~~~-~G~~~~~e~~~h~L~ld~~~~~~---~~~~~k~ 237 (374)
T cd01317 166 PPEAETIMVARDLELAEATGARVHFQHLSTA----RSLELIRKAKA-KGLPVTAEVTPHHLLLDDEALES---YDTNAKV 237 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCCH----HHHHHHHHHHH-CCCCEEEEecHHHHhcCHHHHhc---cCCceEE
Confidence 33444 5888999999999999998 55533 33444444433 35444455666999999998754 4777777
Q ss_pred cchhHhhhhhcCccccccccccccccccchhccccccccc-cccccc
Q 010613 439 QVWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLFCY 484 (506)
Q Consensus 439 ~P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a~~ 484 (506)
+|.. +. .....++.++++.|+.+++| |..+.+
T Consensus 238 ~Ppl----------r~----~~~~~~l~~~~~~G~i~~igsDh~p~~ 270 (374)
T cd01317 238 NPPL----------RS----EEDREALIEALKDGTIDAIASDHAPHT 270 (374)
T ss_pred cCCC----------CC----HHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 8842 11 12467889999999999999 987643
No 156
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.99 E-value=68 Score=30.72 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEE-EeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 363 MELESLLSMTMASDKSGLQVA-IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~-iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
.+.++..++++.+.+.|+++. +-..... +++.+++..++++...++..+-=++.+++++.+...+.|....+.|.
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~----a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDF----AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCc----HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC
Confidence 378899999999999999963 3223333 33444444333222223567888899999999999999999999998
Q ss_pred hH
Q 010613 442 TT 443 (506)
Q Consensus 442 ~~ 443 (506)
+.
T Consensus 100 ~~ 101 (222)
T PRK07114 100 FN 101 (222)
T ss_pred CC
Confidence 63
No 157
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=50.49 E-value=71 Score=30.18 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEE-EeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 363 MELESLLSMTMASDKSGLQVA-IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~-iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
.+.++..++++.+.+.|+++. +-... ..+++.+++..++++ +..+-=++.++.++.++..+.|....+.|.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t----~~a~~~i~~l~~~~~----~~~vGAGTVl~~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT----PVALDAIRLLRKEVP----DALIGAGTVLNPEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC----ccHHHHHHHHHHHCC----CCEEEEEeCCCHHHHHHHHHcCCCEEECCC
Confidence 378999999999999999963 22222 345666777766664 467788899999999999999999999998
Q ss_pred hH
Q 010613 442 TT 443 (506)
Q Consensus 442 ~~ 443 (506)
+.
T Consensus 89 ~~ 90 (204)
T TIGR01182 89 LT 90 (204)
T ss_pred CC
Confidence 63
No 158
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=48.58 E-value=2e+02 Score=28.08 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=54.3
Q ss_pred EEEeecCCcCcccc------------cccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHH
Q 010613 332 VKAFADGSLGSNSA------------LFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY 399 (506)
Q Consensus 332 vKl~~DG~~~~~ta------------~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~ 399 (506)
.|-++||+++.+.. .+.+-+.|..+..+......|.+++.+.++++-|+.+.+|... .+.-|+.+
T Consensus 127 LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~---q~~YL~IV 203 (249)
T PF05673_consen 127 LKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPD---QEEYLAIV 203 (249)
T ss_pred HHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCC---HHHHHHHH
Confidence 46677887765432 1233333332212234556789999999999999999999763 55677777
Q ss_pred HHHHHhcCCCCCCceEeecccCChhHHHHHH
Q 010613 400 KSVVVTTGKRDQRFRIEHAQHLASGTAARFG 430 (506)
Q Consensus 400 e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a 430 (506)
+...+++|. -++++++++-|
T Consensus 204 ~~~~~~~g~-----------~~~~e~l~~~A 223 (249)
T PF05673_consen 204 RHYAERYGL-----------ELDEEELRQEA 223 (249)
T ss_pred HHHHHHcCC-----------CCCHHHHHHHH
Confidence 776666653 24556666554
No 159
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=48.57 E-value=53 Score=31.20 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=27.3
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEeeccch
Q 010613 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDR 390 (506)
Q Consensus 359 G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~ 390 (506)
|.+.+..+.+.++++.+++.|+.+.++++|-.
T Consensus 47 GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 47 GEVLMQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred chHHcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 55667788899999999999999999999843
No 160
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.05 E-value=1e+02 Score=29.01 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHCCCeE-EEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 363 MELESLLSMTMASDKSGLQV-AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v-~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
.+.++..++++.+.+.|+++ .+-.... .+++.+++..++++ +..+-=++.++.++.++..+.|....++|.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp----~a~~~I~~l~~~~~----~~~vGAGTVl~~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTP----AALDAIRAVAAEVE----EAIVGAGTILNAKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCc----cHHHHHHHHHHHCC----CCEEeeEeCcCHHHHHHHHHcCCCEEECCC
Confidence 37899999999999999995 3333332 35566767666654 467888899999999999999999999998
Q ss_pred h
Q 010613 442 T 442 (506)
Q Consensus 442 ~ 442 (506)
+
T Consensus 85 ~ 85 (201)
T PRK06015 85 T 85 (201)
T ss_pred C
Confidence 6
No 161
>PRK08445 hypothetical protein; Provisional
Probab=47.75 E-value=26 Score=35.99 Aligned_cols=75 Identities=9% Similarity=0.048 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeeccch----HHHHHHHHHHHHHHhcCCCCC----C---ceEeecccCC-hhHHHH
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAIGDR----ANDLVLDMYKSVVVTTGKRDQ----R---FRIEHAQHLA-SGTAAR 428 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~----av~~~l~a~e~~~~~~g~~~~----r---~~i~H~~~i~-~~~i~r 428 (506)
...+.|++.+.++.+.+.|.. .+|..|+. ..+...+.++...++.|.... + ..+.+...++ +|++++
T Consensus 71 y~l~~eeI~~~~~~a~~~g~~-~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~ 149 (348)
T PRK08445 71 YILSFEEIDKKIEELLAIGGT-QILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLER 149 (348)
T ss_pred eeCCHHHHHHHHHHHHHcCCC-EEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHH
Confidence 356999999999999999976 67877532 345566677777766652110 0 0111223344 899999
Q ss_pred HHhCCCEE
Q 010613 429 FGDQGIVA 436 (506)
Q Consensus 429 ~a~lgv~~ 436 (506)
+++.|+.-
T Consensus 150 LkeAGl~~ 157 (348)
T PRK08445 150 LQAKGLSS 157 (348)
T ss_pred HHHcCCCC
Confidence 99999863
No 162
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=47.71 E-value=1e+02 Score=30.04 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCC
Q 010613 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA 422 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~ 422 (506)
+.+.+.+..+.+.++|+++.+|+. .... ..+....+++ +.+..+.|+....
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~-~~~l----~~l~~l~~~~---~l~ivldH~G~p~ 158 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFD-AVDL----PALLPFLQKL---PVAVVIDHFGRPD 158 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeC-HhhH----HHHHHHHHHC---CCCEEEECCCCCC
Confidence 567788999999999999999974 3322 3344444444 5789999998764
No 163
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=47.19 E-value=1.1e+02 Score=32.88 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=52.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCe-EEEeeccch----HHHHHHHHHHHHHHhcCCCC--CCceEeecccCChhHHHHHHhCC
Q 010613 361 QVMELESLLSMTMASDKSGLQ-VAIHAIGDR----ANDLVLDMYKSVVVTTGKRD--QRFRIEHAQHLASGTAARFGDQG 433 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~-v~iHa~Gd~----av~~~l~a~e~~~~~~g~~~--~r~~i~H~~~i~~~~i~r~a~lg 433 (506)
..++.|++.+.++.+.+.|+. +++. .|.. .++.++++++.+.+..+..+ .+..++- .-++.++++++++.|
T Consensus 113 ~~Ls~EEI~~ea~~~~~~G~~~i~Lv-sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~ini-g~lt~eey~~LkeaG 190 (469)
T PRK09613 113 KKLTQEEIREEVKALEDMGHKRLALV-AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNI-APTTVENYKKLKEAG 190 (469)
T ss_pred eECCHHHHHHHHHHHHHCCCCEEEEE-eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEe-ecCCHHHHHHHHHcC
Confidence 467999999999999999977 3443 4432 57888888877765321111 2556654 457999999999999
Q ss_pred CEE
Q 010613 434 IVA 436 (506)
Q Consensus 434 v~~ 436 (506)
+.-
T Consensus 191 v~~ 193 (469)
T PRK09613 191 IGT 193 (469)
T ss_pred CCE
Confidence 853
No 164
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.74 E-value=1.3e+02 Score=28.59 Aligned_cols=76 Identities=17% Similarity=0.084 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEE-EeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 363 MELESLLSMTMASDKSGLQVA-IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~-iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
.+.++..++++.+.+.|+++. +-.... .+++++++..++++. ++...+-=++.++.++.++..+.|....+.|.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~----~a~~~i~~l~~~~~~-~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~ 96 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNP----FASEVIKELVELYKD-DPEVLIGAGTVLDAVTARLAILAGAQFIVSPS 96 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCc----cHHHHHHHHHHHcCC-CCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC
Confidence 378999999999999999963 333332 356667777666542 12467888899999999999999999999998
Q ss_pred hH
Q 010613 442 TT 443 (506)
Q Consensus 442 ~~ 443 (506)
+.
T Consensus 97 ~~ 98 (213)
T PRK06552 97 FN 98 (213)
T ss_pred CC
Confidence 63
No 165
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=45.43 E-value=1e+02 Score=35.41 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=35.1
Q ss_pred cCCCeEEEcCCCeeecccccccccccccccccccccCCCCCCHHHHHHHHHHHHHc
Q 010613 88 ADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKN 143 (506)
Q Consensus 88 ~~~~~viD~~g~~v~PGfiD~H~H~~~~g~~~~~~~l~~~~s~~~~~~~l~~~~~~ 143 (506)
++...|---.|..|+-|=||.|-++..- ...+.+.+++.++.+.+.++.-.
T Consensus 431 GEs~PV~Kk~gs~ViaGsiN~nG~l~Vk-----aT~~g~dttla~IvkLVEEAQ~s 481 (951)
T KOG0207|consen 431 GESMPVPKKKGSTVIAGSINLNGTLLVK-----ATKVGGDTTLAQIVKLVEEAQLS 481 (951)
T ss_pred CCceecccCCCCeeeeeeecCCceEEEE-----EEeccccchHHHHHHHHHHHHcc
Confidence 4444555567788889999888776431 12345567899999999987654
No 166
>PRK08508 biotin synthase; Provisional
Probab=44.87 E-value=3.2e+02 Score=26.97 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHCCC-eEEEeecc----chHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCE
Q 010613 362 VMELESLLSMTMASDKSGL-QVAIHAIG----DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~-~v~iHa~G----d~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~ 435 (506)
..++|++.+.++.+.+.|. .+++-..| +...+.+++.++.++++.+. .. ...=...++++++++|++.|+.
T Consensus 39 ~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~--l~-i~~s~G~~~~e~l~~Lk~aGld 114 (279)
T PRK08508 39 RKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG--LH-LIACNGTASVEQLKELKKAGIF 114 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC--cE-EEecCCCCCHHHHHHHHHcCCC
Confidence 3699999999999988887 44443333 33667777877777655431 11 1111345689999999999983
No 167
>PRK15108 biotin synthase; Provisional
Probab=44.58 E-value=1.2e+02 Score=31.11 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHCCCeE-EEeecc-c---hHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCE
Q 010613 362 VMELESLLSMTMASDKSGLQV-AIHAIG-D---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v-~iHa~G-d---~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~ 435 (506)
.+++|++.+.++.+.+.|+.= ++-..| + ...+.+.+.++.++ +.+. . .+.+...++++.++++++.|+.
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik-~~~i---~-v~~s~G~ls~e~l~~LkeAGld 148 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVK-AMGL---E-TCMTLGTLSESQAQRLANAGLD 148 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHH-hCCC---E-EEEeCCcCCHHHHHHHHHcCCC
Confidence 479999999999998888763 332222 2 24566777776665 3332 2 3455667899999999999986
No 168
>PRK06256 biotin synthase; Validated
Probab=42.74 E-value=1.4e+02 Score=30.33 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHCCCe-EEEeeccc----hHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEE
Q 010613 362 VMELESLLSMTMASDKSGLQ-VAIHAIGD----RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~-v~iHa~Gd----~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~ 436 (506)
..+.|++.+.++.+.+.|.. +.+-..|. ...+.+++.++.+.++. +.+ ...+...++++.+++|++.|+..
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~---~i~-~~~~~g~l~~e~l~~LkeaG~~~ 165 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEET---DLE-ICACLGLLTEEQAERLKEAGVDR 165 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcC---CCc-EEecCCcCCHHHHHHHHHhCCCE
Confidence 46899999999999988863 44444443 22346666666665442 222 33455568999999999999753
No 169
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=41.00 E-value=97 Score=33.19 Aligned_cols=210 Identities=18% Similarity=0.171 Sum_probs=104.9
Q ss_pred CCCeEEEEecCCchhhhcHHHHHHcCCCCCCCCCCCCeeeeCCCCCcCEeEhhhHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 010613 175 PHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASN 254 (506)
Q Consensus 175 ~~~Pv~i~~~~~H~~~~Ns~aL~~~gi~~~~~~p~gg~i~rd~~G~~tG~l~e~a~~~~~~~~p~~s~~~~~~~~~~~~~ 254 (506)
.+.|.++.....|.+|- ||.+.+|+.-... .+++. --..+. ..+++++.
T Consensus 155 ~~~P~ii~s~~aH~s~~--Kaa~~lG~~~~~v-------~~~~~------------------~~~id~----~~l~~~i~ 203 (460)
T COG0076 155 GGKPNIVCSETAHFSFE--KAARYLGLGLRRV-------PTVPT------------------DYRIDV----DALEEAID 203 (460)
T ss_pred CCCCeEEecCcchhHHH--HHHHHhCCCceeE-------EeccC------------------ccccCH----HHHHHHHH
Confidence 45889999999999864 8888888853221 11110 001233 34555666
Q ss_pred HHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEccCccchhhHHHHHHhcCCcCCCc-EEEceEE
Q 010613 255 LALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDW-VYLGGVK 333 (506)
Q Consensus 255 ~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gvK 333 (506)
+....| .-|.-++....| ..|++ +.+.++.++-+++++|-..+...-. .+.+.. ..| +++.+++
T Consensus 204 ~~t~~g-~vV~~aGtT~~G-----~iDdi-~~ia~ia~~~~i~lHVDAA~GG~~~----pf~~~~----~~~~f~l~~vd 268 (460)
T COG0076 204 ENTIGG-VVVGTAGTTDTG-----SIDDI-EELADIAEEYGIWLHVDAAFGGFLL----PFLEPD----GRWDFGLEGVD 268 (460)
T ss_pred hhccCc-eEEEEecCCCCC-----ccCCH-HHHHHHHHHcCCcEEEEccccceee----cccCcc----chhhcCCCCce
Confidence 666665 222222211111 23444 5566666777899998755432100 000000 011 2232333
Q ss_pred -EeecCCcCcccccccCCcCCCCCCCcccCC-CHHHHHHHHHHHHHCCC---eEEEeeccchHHHHHHHHHHHHHHhcCC
Q 010613 334 -AFADGSLGSNSALFHEPYADEPHNYGLQVM-ELESLLSMTMASDKSGL---QVAIHAIGDRANDLVLDMYKSVVVTTGK 408 (506)
Q Consensus 334 -l~~DG~~~~~ta~l~~pY~d~~~~~G~~~~-s~e~l~~~~~~a~~~g~---~v~iHa~Gd~av~~~l~a~e~~~~~~g~ 408 (506)
+-+|+.= ++..|+ ..|...+ +++.+.+....+.-..- -...+..+-+.-..++..+-. .+..|.
T Consensus 269 SIt~d~HK-----~g~aP~-----~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~-l~~lG~ 337 (460)
T COG0076 269 SITVDGHK-----YGLAPI-----GCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYAN-LRRLGR 337 (460)
T ss_pred EEEECccc-----ccCCCC-----CceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHH-HHHhCH
Confidence 2344431 123344 2344333 44467666654443321 123334444433344444432 344565
Q ss_pred CCCCceEeecccCChhHHHHHHhCC-CEEEecch
Q 010613 409 RDQRFRIEHAQHLASGTAARFGDQG-IVASMQVW 441 (506)
Q Consensus 409 ~~~r~~i~H~~~i~~~~i~r~a~lg-v~~s~~P~ 441 (506)
.+.+-.+.|+.-....-.++++++| .-+...|.
T Consensus 338 eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~ 371 (460)
T COG0076 338 EGYRKLLDRTLELARYLAEELEKLGDFELVNEPE 371 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCc
Confidence 5667777777777888888888887 44544453
No 170
>PRK14057 epimerase; Provisional
Probab=40.67 E-value=2.6e+02 Score=27.37 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=53.3
Q ss_pred CCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHH
Q 010613 324 SDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVV 403 (506)
Q Consensus 324 ~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~ 403 (506)
-++++++ .+||..- |- ..+.++.++++. + .+++.+|..=.. -+..++.+.++
T Consensus 46 ~d~lHiD----VMDG~FV--------PN---------itfGp~~i~~i~----~-~~p~DvHLMV~~-P~~~i~~~~~a- 97 (254)
T PRK14057 46 QPLLHLD----LMDGQFC--------PQ---------FTVGPWAVGQLP----Q-TFIKDVHLMVAD-QWTAAQACVKA- 97 (254)
T ss_pred CCEEEEe----ccCCccC--------Cc---------cccCHHHHHHhc----c-CCCeeEEeeeCC-HHHHHHHHHHh-
Confidence 5677776 6788743 11 245677777762 2 688889976432 22334444433
Q ss_pred HhcCCCCCCceEeecccC-C-hhHHHHHHhCC-----------CEEEecchh
Q 010613 404 VTTGKRDQRFRIEHAQHL-A-SGTAARFGDQG-----------IVASMQVWT 442 (506)
Q Consensus 404 ~~~g~~~~r~~i~H~~~i-~-~~~i~r~a~lg-----------v~~s~~P~~ 442 (506)
+......|.+-. . ...+++++++| +.++++|..
T Consensus 98 ------Gad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T 143 (254)
T PRK14057 98 ------GAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT 143 (254)
T ss_pred ------CCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC
Confidence 235688898843 3 26678888888 578888875
No 171
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=40.42 E-value=1.6e+02 Score=26.22 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
.+++ +++..|-+.+..+..=++=+.+.......+-+..++.|..+. .+.=+-.+.++|++.+++.|+.-.+.|.+
T Consensus 50 ~tp~---e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i--~v~~GGvip~~d~~~l~~~G~~~if~pgt 124 (143)
T COG2185 50 QTPE---EAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDI--LVVVGGVIPPGDYQELKEMGVDRIFGPGT 124 (143)
T ss_pred CCHH---HHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcce--EEeecCccCchhHHHHHHhCcceeeCCCC
Confidence 3554 444555666666655555444444444444444555565332 23556677899999999999999999986
Q ss_pred H
Q 010613 443 T 443 (506)
Q Consensus 443 ~ 443 (506)
.
T Consensus 125 ~ 125 (143)
T COG2185 125 P 125 (143)
T ss_pred C
Confidence 3
No 172
>PTZ00413 lipoate synthase; Provisional
Probab=40.30 E-value=1.4e+02 Score=31.09 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=51.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeecc------chHHHHHHHHHHHHHHhcCCCCCCceEeecc---cCChhHHHHHHh
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAIG------DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ---HLASGTAARFGD 431 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~G------d~av~~~l~a~e~~~~~~g~~~~r~~i~H~~---~i~~~~i~r~a~ 431 (506)
...++++..+.++.+.+.|+...+=+.| |...+.+.++++++++..+. ..++=+. ..+++.++++++
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~----~~IevligDf~g~~e~l~~L~e 250 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPE----LLLEALVGDFHGDLKSVEKLAN 250 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCC----CeEEEcCCccccCHHHHHHHHh
Confidence 4569999999999999999975554555 45677888888887765432 2333221 127899999999
Q ss_pred CCCEE
Q 010613 432 QGIVA 436 (506)
Q Consensus 432 lgv~~ 436 (506)
.|+.+
T Consensus 251 AG~dv 255 (398)
T PTZ00413 251 SPLSV 255 (398)
T ss_pred cCCCE
Confidence 99943
No 173
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=40.11 E-value=1.7e+02 Score=27.75 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHCCCeE-EEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 364 ELESLLSMTMASDKSGLQV-AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v-~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
+.|+-..+++..-+.|++. -+-...+. ++++++.+.+++| +..|-=++.+++++++...+.|....+.|++
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp~----a~e~I~~l~~~~p----~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~ 94 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTPA----ALEAIRALAKEFP----EALIGAGTVLNPEQARQAIAAGAQFIVSPGL 94 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCC----HHHHHHHHHHhCc----ccEEccccccCHHHHHHHHHcCCCEEECCCC
Confidence 6788889999999999985 34334433 4556666666665 6788899999999999999999999999986
Q ss_pred H
Q 010613 443 T 443 (506)
Q Consensus 443 ~ 443 (506)
.
T Consensus 95 ~ 95 (211)
T COG0800 95 N 95 (211)
T ss_pred C
Confidence 3
No 174
>PRK09234 fbiC FO synthase; Reviewed
Probab=37.80 E-value=1.7e+02 Score=33.96 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=51.9
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEeec-cch-------------------HHHHHHHHHHHHHHhcCCCCCCceEeecc
Q 010613 360 LQVMELESLLSMTMASDKSGLQVAIHAI-GDR-------------------ANDLVLDMYKSVVVTTGKRDQRFRIEHAQ 419 (506)
Q Consensus 360 ~~~~s~e~l~~~~~~a~~~g~~v~iHa~-Gd~-------------------av~~~l~a~e~~~~~~g~~~~r~~i~H~~ 419 (506)
...+++|++.+.++.+.+.|..= +|.. |+. .++.+.+.++.++++.|.. .-.|.-
T Consensus 99 ~~~ls~eEIl~~a~~~~~~G~~e-~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~----p~i~~G 173 (843)
T PRK09234 99 AAYLSPDEVLDIARAGAAAGCKE-ALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLL----PHLNPG 173 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCE-EEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCC----ceeeeC
Confidence 35689999999999999999886 4554 432 2566666777776665542 123445
Q ss_pred cCChhHHHHHHhCCCEE
Q 010613 420 HLASGTAARFGDQGIVA 436 (506)
Q Consensus 420 ~i~~~~i~r~a~lgv~~ 436 (506)
.+++++++++++.|+..
T Consensus 174 ~ls~~E~~~Lk~~g~s~ 190 (843)
T PRK09234 174 VMSWSELARLKPVAPSM 190 (843)
T ss_pred CCCHHHHHHHHHhcCcC
Confidence 68999999999999753
No 175
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.01 E-value=2e+02 Score=27.15 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEE-EeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 363 MELESLLSMTMASDKSGLQVA-IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~-iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
.+.+++.++++.+.+.|+++. +=..... +++.+++..++++. +..+-=++.+++++++...+.|....+.|.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~----~~~~i~~l~~~~~~---~~~iGaGTV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPD----PFDSIAALVKALGD---RALIGAGTVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc----HHHHHHHHHHHcCC---CcEEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence 378999999999999999863 3223332 33456666666652 356777788899999999999999999887
Q ss_pred h
Q 010613 442 T 442 (506)
Q Consensus 442 ~ 442 (506)
.
T Consensus 92 ~ 92 (206)
T PRK09140 92 T 92 (206)
T ss_pred C
Confidence 6
No 176
>PRK09234 fbiC FO synthase; Reviewed
Probab=36.07 E-value=1.4e+02 Score=34.72 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=49.4
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEeec-c---chHHHHHHHHHHHHHHhcCCCCCCceEeecc-------------cCC
Q 010613 360 LQVMELESLLSMTMASDKSGLQVAIHAI-G---DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-------------HLA 422 (506)
Q Consensus 360 ~~~~s~e~l~~~~~~a~~~g~~v~iHa~-G---d~av~~~l~a~e~~~~~~g~~~~r~~i~H~~-------------~i~ 422 (506)
....+.|++.+.++.+.+.|.. .+|.. | +...+..++.++.++++.+. .-.|+. +..
T Consensus 554 ~y~Ls~eeI~~~a~ea~~~G~t-ev~i~gG~~p~~~~~~y~~lir~IK~~~p~-----i~i~afsp~Ei~~~a~~~Gl~~ 627 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWVAGAT-EVCMQGGIHPELPGTGYADLVRAVKARVPS-----MHVHAFSPMEIVNGAARLGLSI 627 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCC-EEEEecCCCCCcCHHHHHHHHHHHHHhCCC-----eeEEecChHHHHHHHHHcCCCH
Confidence 4567999999999999999876 23333 3 22456666777777666542 344554 456
Q ss_pred hhHHHHHHhCCCEE
Q 010613 423 SGTAARFGDQGIVA 436 (506)
Q Consensus 423 ~~~i~r~a~lgv~~ 436 (506)
+|.++++++.|+.-
T Consensus 628 ~e~l~~LkeAGLds 641 (843)
T PRK09234 628 REWLTALREAGLDT 641 (843)
T ss_pred HHHHHHHHHhCcCc
Confidence 78889999999853
No 177
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=35.87 E-value=1.2e+02 Score=31.45 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh--
Q 010613 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT-- 442 (506)
Q Consensus 365 ~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~-- 442 (506)
.+.|+.++..+.++|+++.+-+-| ..-..+.+.+.+..++.|.. .+....|+..+.+.--++++ .|..+...+.-
T Consensus 57 ~~~L~~~L~~~~~~gIkvI~NaGg-~np~~~a~~v~eia~e~Gl~-lkvA~V~gDd~~~~v~~~~~-~g~~~~~l~~~~~ 133 (362)
T PF07287_consen 57 VRDLRPLLPAAAEKGIKVITNAGG-LNPAGCADIVREIARELGLS-LKVAVVYGDDLKDEVKELLA-EGETIRPLDTGPP 133 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCC-CCHHHHHHHHHHHHHhcCCC-eeEEEEECccchHhHHHHHh-CCCCCccCCCCCC
Confidence 458999999999999999887644 33334777888888888886 88888888877665444544 44322111111
Q ss_pred -HhhhhhcCccccccccccccccccchhccccccccc
Q 010613 443 -TFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF 478 (506)
Q Consensus 443 -~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG 478 (506)
.-|... .......-|..||.+.+++|..|-|.
T Consensus 134 l~~~~~~----~~~a~aylGa~pI~~AL~~GADIVI~ 166 (362)
T PF07287_consen 134 LSEWDDR----IVSANAYLGAEPIVEALEAGADIVIT 166 (362)
T ss_pred cchhccc----cceEEEecChHHHHHHHHcCCCEEEe
Confidence 111111 01111122567999999999999887
No 178
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=35.43 E-value=2e+02 Score=27.61 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeec-----cchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEE
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAI-----GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~-----Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~ 436 (506)
..+.+.+.+-...+.+.|..-.+-.- |+--.+..-+.+.+...+.|+ ....|..++++++++.+++.++-+
T Consensus 38 ~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l----~inaHvGfvdE~~~eklk~~~vdv 113 (275)
T COG1856 38 KVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGL----LINAHVGFVDESDLEKLKEELVDV 113 (275)
T ss_pred ccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCe----EEEEEeeeccHHHHHHHHHhcCcE
Confidence 34556777777778888887665443 455667777777777777665 588999999999999999999877
Q ss_pred Eec
Q 010613 437 SMQ 439 (506)
Q Consensus 437 s~~ 439 (506)
+.-
T Consensus 114 vsL 116 (275)
T COG1856 114 VSL 116 (275)
T ss_pred EEE
Confidence 653
No 179
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=35.07 E-value=81 Score=30.52 Aligned_cols=77 Identities=9% Similarity=0.145 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHCCCeEEEeeccch--------HHHHHHHHHHHHHHhcCCCCCCceEeecccCCh-hHHHHHHhCCCEE
Q 010613 366 ESLLSMTMASDKSGLQVAIHAIGDR--------ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQGIVA 436 (506)
Q Consensus 366 e~l~~~~~~a~~~g~~v~iHa~Gd~--------av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~-~~i~r~a~lgv~~ 436 (506)
+.+.-+.+...+.|+++.+|-.-+. +-...|.++.+..++.| .....+|||+..+- +.++-.++-.|..
T Consensus 117 ~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptll~LhqrfP--~LKivlEHcTt~dAv~~ve~a~~~sVaa 194 (344)
T KOG2902|consen 117 GKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLLQLHQRFP--QLKIVLEHCTTMDAVNFVESAKEGSVAA 194 (344)
T ss_pred hhhhHHHHHHHHcCceEEecCCCCCccCCceecchhhhHHHHHHHHHhCc--cceeHHHhcccHHHHHHHHhhcCCceee
Confidence 3455566677789999999954222 23344555555556655 45779999997764 4455566677788
Q ss_pred EecchhHh
Q 010613 437 SMQVWTTF 444 (506)
Q Consensus 437 s~~P~~~~ 444 (506)
++.+.|.+
T Consensus 195 TvTahHL~ 202 (344)
T KOG2902|consen 195 TVTAHHLL 202 (344)
T ss_pred EeehheeE
Confidence 88888753
No 180
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=35.00 E-value=8.5e+02 Score=29.52 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHH-CCCeEEEeeccc--hHHHHHHHHHHH
Q 010613 363 MELESLLSMTMASDK-SGLQVAIHAIGD--RANDLVLDMYKS 401 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~-~g~~v~iHa~Gd--~av~~~l~a~e~ 401 (506)
..+....++++..++ .++++++|+.-+ -|+-..+.+++.
T Consensus 715 l~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~ea 756 (1143)
T TIGR01235 715 LKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEA 756 (1143)
T ss_pred cCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHh
Confidence 457777777776554 488988888644 366666666654
No 181
>PRK06233 hypothetical protein; Provisional
Probab=34.67 E-value=47 Score=34.44 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCeeecccccccccccccccccccccCCCCCCHHHHHHHHHHHHHcCCCCCeEE
Q 010613 98 GKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWIL 151 (506)
Q Consensus 98 g~~v~PGfiD~H~H~~~~g~~~~~~~l~~~~s~~~~~~~l~~~~~~~~~~~wi~ 151 (506)
++.|.+|+||+|..- +.+.+++.++|+++++-.++....+
T Consensus 297 ~k~v~lGvid~~~~~--------------vE~~e~I~~rI~~a~~~v~~e~l~l 336 (372)
T PRK06233 297 NVRIVLGLITSKFPE--------------LEDEDEIIARIDEATEYVPLSNLAL 336 (372)
T ss_pred CCEEEeeeecCCCCC--------------CCCHHHHHHHHHHHHHhCCHHHEEe
Confidence 578999999999864 3889999999999987655444433
No 182
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=34.46 E-value=1.5e+02 Score=30.31 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeec-c---chHHHHHHHHHHHHHHhcCCCCCCceEeec-------------ccCChh
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAI-G---DRANDLVLDMYKSVVVTTGKRDQRFRIEHA-------------QHLASG 424 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~-G---d~av~~~l~a~e~~~~~~g~~~~r~~i~H~-------------~~i~~~ 424 (506)
..|.|++.+.++.+.+.|+. .+|.. | +...+.+++.++..++..+. .. .|| ...+++
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~-~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--i~---~~~~t~~ei~~~~~~~g~~~~e 142 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGAT-EVCIQGGIHPDLDGDFYLDILRAVKEEVPG--MH---IHAFSPMEVYYGARNSGLSVEE 142 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCC-EEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--ce---EEecCHHHHHHHHHHcCCCHHH
Confidence 46999999999999999976 34544 3 22456667777777665331 11 232 345789
Q ss_pred HHHHHHhCCCEEE
Q 010613 425 TAARFGDQGIVAS 437 (506)
Q Consensus 425 ~i~r~a~lgv~~s 437 (506)
.+++|++.|+.-.
T Consensus 143 ~l~~LkeAGl~~i 155 (343)
T TIGR03551 143 ALKRLKEAGLDSM 155 (343)
T ss_pred HHHHHHHhCcccc
Confidence 9999999998643
No 183
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=34.32 E-value=1.7e+02 Score=30.29 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=50.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeec-cc----hHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCE
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAI-GD----RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~-Gd----~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~ 435 (506)
...+.+++.+.++.+.+.|+. .+|.. |+ ..++.+++.++.+.+..+ ...+ |...+++++++++++.|+.
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~-~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p----~i~i-~~g~lt~e~l~~Lk~aGv~ 175 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFE-HILLLTGEHEAKVGVDYIRRALPIAREYFS----SVSI-EVQPLSEEEYAELVELGLD 175 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCC-EEEEeeCCCCCCCCHHHHHHHHHHHHHhCC----Ccee-ccCCCCHHHHHHHHHcCCC
Confidence 467999999999999999977 33333 43 346777777777765543 2233 5566899999999999985
No 184
>PRK13404 dihydropyrimidinase; Provisional
Probab=33.75 E-value=46 Score=35.79 Aligned_cols=97 Identities=13% Similarity=0.000 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHCCCeE-EEeeccchHHHHHHHHHHHHHHhcCCCCCCceEe---ecccCChhHHHHHHhCCCEEEec
Q 010613 364 ELESLLSMTMASDKSGLQV-AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIE---HAQHLASGTAARFGDQGIVASMQ 439 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v-~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~---H~~~i~~~~i~r~a~lgv~~s~~ 439 (506)
..+.+.+.+..|++.|.++ .+|+.-.++ ++.+.++++ .|. ....+ |.-++++++++.....|..+.++
T Consensus 219 E~~~v~~~~~la~~~g~~~hi~Hvs~~~~----~~~i~~~k~-~g~---~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~ 290 (477)
T PRK13404 219 EREATHRAIALAELVDVPILIVHVSGREA----AEQIRRARG-RGL---KIFAETCPQYLFLTAEDLDRPGMEGAKYICS 290 (477)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHH----HHHHHHHHH-CCC---eEEEEEChhhhccCHHHhcCccccCCceEEC
Confidence 3566778888999999999 458775444 344444433 232 33444 55566777776544467777888
Q ss_pred chhHhhhhhcCccccccccccccccccchhccccccccc-cccc
Q 010613 440 VWTTFWQSIVNPLLISTDVWNFRYTIGPIHIIAVLVSIF-DGLF 482 (506)
Q Consensus 440 P~~~~~~~~~~~~~~g~~~~~~~~pi~~~~~~Gv~V~lG-D~~a 482 (506)
|-. +.. .....+.+.+..|..-+++ |-.+
T Consensus 291 Ppl----------r~~----~d~~aL~~~l~~G~id~i~sDHap 320 (477)
T PRK13404 291 PPP----------RDK----ANQEAIWNGLADGTFEVFSSDHAP 320 (477)
T ss_pred CCC----------CCh----HHHHHHHHHHhCCCceEEecCCCC
Confidence 753 111 1234566777788888888 8543
No 185
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=33.56 E-value=4.7e+02 Score=25.68 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHH-CCCeEEEeeccc--hHHHHHHHHHHH
Q 010613 363 MELESLLSMTMASDK-SGLQVAIHAIGD--RANDLVLDMYKS 401 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~-~g~~v~iHa~Gd--~av~~~l~a~e~ 401 (506)
.+|+++.++++..++ .++++.+|+.-| -|+..++.+++.
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~a 216 (275)
T cd07937 175 LTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEA 216 (275)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 468888888887665 367777776544 366666666643
No 186
>PRK08444 hypothetical protein; Provisional
Probab=33.38 E-value=2.1e+02 Score=29.47 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=48.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCe-EEEeecc--chHHHHHHHHHHHHHHhcCCCCCCceEeec-------------ccCChh
Q 010613 361 QVMELESLLSMTMASDKSGLQ-VAIHAIG--DRANDLVLDMYKSVVVTTGKRDQRFRIEHA-------------QHLASG 424 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~-v~iHa~G--d~av~~~l~a~e~~~~~~g~~~~r~~i~H~-------------~~i~~~ 424 (506)
..+++|++.+.++.+.+.|.. +++-..+ +...+...+.+..++++.| +.-.|+ ....++
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p-----~i~i~a~s~~Ei~~~a~~~g~~~~e 152 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYP-----NLHVKAMTAAEVDFLSRKFGKSYEE 152 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCC-----CceEeeCCHHHHHHHHHHcCCCHHH
Confidence 357999999999999999876 3333221 2355777778877776654 244443 244568
Q ss_pred HHHHHHhCCCE
Q 010613 425 TAARFGDQGIV 435 (506)
Q Consensus 425 ~i~r~a~lgv~ 435 (506)
.+++|++.|+.
T Consensus 153 ~l~~LkeAGl~ 163 (353)
T PRK08444 153 VLEDMLEYGVD 163 (353)
T ss_pred HHHHHHHhCcc
Confidence 99999999974
No 187
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=33.37 E-value=1.1e+02 Score=28.69 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHCCCeE-EEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 364 ELESLLSMTMASDKSGLQV-AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~v-~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
+.++..++++...+.|+++ .+-..... +++++++..++++ ...+-=++.++.++.++..+.|....++|.+
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t~~----a~~~I~~l~~~~p----~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~ 89 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRTPN----ALEAIEALRKEFP----DLLVGAGTVLTAEQAEAAIAAGAQFIVSPGF 89 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTSTT----HHHHHHHHHHHHT----TSEEEEES--SHHHHHHHHHHT-SEEEESS-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCcc----HHHHHHHHHHHCC----CCeeEEEeccCHHHHHHHHHcCCCEEECCCC
Confidence 5778889999999999996 33333333 4556666666654 4677888999999999999999999999986
Q ss_pred H
Q 010613 443 T 443 (506)
Q Consensus 443 ~ 443 (506)
.
T Consensus 90 ~ 90 (196)
T PF01081_consen 90 D 90 (196)
T ss_dssp -
T ss_pred C
Confidence 3
No 188
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=33.01 E-value=7.2e+02 Score=27.64 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEccCccch---hhHHHHHHhcCCcC
Q 010613 247 EALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETW---SSLADLINKTGHVL 323 (506)
Q Consensus 247 ~~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~~~~~~---~~~~~~~~~~~~~~ 323 (506)
+.++..++.+.++|+..+.=.... +..+.+....+.+.+.|. ..-..+++..... +.+.++.++....+
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~l-------nd~~n~~~~i~~~k~~G~-~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G 167 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDAL-------NDARNLKVAIDAIKSHKK-HAQGAICYTTSPVHTLDNFLELGKKLAEMG 167 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccC-------cchHHHHHHHHHHHHcCC-EEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 356667888999999997744320 123445455666666674 3333333322222 22222222211111
Q ss_pred CCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHH-CCCeEEEeeccch--HHHHHHHHHH
Q 010613 324 SDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDK-SGLQVAIHAIGDR--ANDLVLDMYK 400 (506)
Q Consensus 324 ~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~-~g~~v~iHa~Gd~--av~~~l~a~e 400 (506)
-+.+.+ | +..|. .++++..++++..++ .++++++|+.-+. ++-..+.+++
T Consensus 168 ad~I~I---k----------------------DtaG~--l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAie 220 (596)
T PRK14042 168 CDSIAI---K----------------------DMAGL--LTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVL 220 (596)
T ss_pred CCEEEe---C----------------------CcccC--CCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHH
Confidence 122211 1 12232 467777777776654 4788888876444 5555566654
Q ss_pred H
Q 010613 401 S 401 (506)
Q Consensus 401 ~ 401 (506)
.
T Consensus 221 a 221 (596)
T PRK14042 221 A 221 (596)
T ss_pred h
Confidence 4
No 189
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.73 E-value=1.8e+02 Score=27.58 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEE-EeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 363 MELESLLSMTMASDKSGLQVA-IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~-iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
.+.++..++++.+.+.|+++. +=...+ ..++++++.++++| +..+-=.+.+++++.++..+.|....+.|.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~----~~~~~I~~l~~~~p----~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP----AALEAIRLIAKEVP----EALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc----cHHHHHHHHHHHCC----CCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 378999999999999999852 323332 35566777766665 366777888899999999999999999998
Q ss_pred hH
Q 010613 442 TT 443 (506)
Q Consensus 442 ~~ 443 (506)
+.
T Consensus 96 ~~ 97 (212)
T PRK05718 96 LT 97 (212)
T ss_pred CC
Confidence 74
No 190
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=32.08 E-value=6.9e+02 Score=27.11 Aligned_cols=39 Identities=3% Similarity=0.112 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHC---CCeEEEeeccc--hHHHHHHHHHHH
Q 010613 363 MELESLLSMTMASDKS---GLQVAIHAIGD--RANDLVLDMYKS 401 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~---g~~v~iHa~Gd--~av~~~l~a~e~ 401 (506)
.++++..++++..++. ++++++|+.-+ -|+-..+.+++.
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieA 224 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEA 224 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHc
Confidence 4678888888877664 68888887644 366666766654
No 191
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=31.70 E-value=2.7e+02 Score=27.41 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHCCCeE-EEeecc-chHHH---HHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEE
Q 010613 362 VMELESLLSMTMASDKSGLQV-AIHAIG-DRAND---LVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v-~iHa~G-d~av~---~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~ 436 (506)
..+++++.+.++.+.+.|++- ++-..| +...+ ..+..+.+..++.+. . ...|...++++.+++|++.|+..
T Consensus 61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i---~-~~~~~g~~~~e~l~~Lk~aG~~~ 136 (296)
T TIGR00433 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGL---K-TCATLGLLDPEQAKRLKDAGLDY 136 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCC---e-EEecCCCCCHHHHHHHHHcCCCE
Confidence 456788877777777888753 343322 22222 233444333344432 2 34566788999999999999753
No 192
>PRK07360 FO synthase subunit 2; Reviewed
Probab=31.61 E-value=2.3e+02 Score=29.32 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEee-ccc-h---HHHHHHHHHHHHHHhcCCCCCCceEeec-------------ccCCh
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHA-IGD-R---ANDLVLDMYKSVVVTTGKRDQRFRIEHA-------------QHLAS 423 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa-~Gd-~---av~~~l~a~e~~~~~~g~~~~r~~i~H~-------------~~i~~ 423 (506)
..+.|++.+.++.+.+.|+.- +|. .|. . ..+...+.+.+++++.+. .-.|+ -..++
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~-i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~-----i~i~a~s~~ei~~~~~~~G~~~~ 163 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATE-VCIQGGLHPAADSLEFYLEILEAIKEEFPD-----IHLHAFSPMEVYFAAREDGLSYE 163 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCE-EEEccCCCCCCCcHHHHHHHHHHHHHhCCC-----cceeeCCHHHHHHHHhhcCCCHH
Confidence 579999999999999999774 333 442 2 256677777777665432 22332 24467
Q ss_pred hHHHHHHhCCCEEE
Q 010613 424 GTAARFGDQGIVAS 437 (506)
Q Consensus 424 ~~i~r~a~lgv~~s 437 (506)
+.++++++.|+.--
T Consensus 164 e~l~~LkeAGld~~ 177 (371)
T PRK07360 164 EVLKALKDAGLDSM 177 (371)
T ss_pred HHHHHHHHcCCCcC
Confidence 88999999998544
No 193
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.33 E-value=6.1e+02 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcceEEe
Q 010613 239 EVSVDERREALLRASNLALSRGVTTVVD 266 (506)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~GiTsv~d 266 (506)
..+.++..+.+...++.+.+.|......
T Consensus 108 ~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 108 KKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3467777888888888888889875543
No 194
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=30.08 E-value=1.9e+02 Score=29.88 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=48.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEeec-cc----hHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCE
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHAI-GD----RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa~-Gd----~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~ 435 (506)
..++.|++.+.++.+.+.|+. .+|.. |. ...+.+++.++.+.+..+. ..+ +...++.++++++++.|+.
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~-~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~----i~I-ei~~lt~e~~~~Lk~aGv~ 174 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFK-EILLVTGESEKAAGVEYIAEAIKLAREYFSS----LAI-EVQPLNEEEYKKLVEAGLD 174 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCC-EEEEeeCCCCCCCCHHHHHHHHHHHHHhCCc----ccc-ccccCCHHHHHHHHHcCCC
Confidence 457999999999999999965 44433 42 2356777777777665432 223 2345899999999999984
No 195
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=29.93 E-value=6.2e+02 Score=26.28 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCcceEEeCc
Q 010613 247 EALLRASNLALSRGVTTVVDFG 268 (506)
Q Consensus 247 ~~~~~~~~~~~~~GiTsv~d~~ 268 (506)
+.++...+.+.+.|+|++.++.
T Consensus 77 e~~~~~~~~~~~~GvTt~l~t~ 98 (380)
T TIGR00221 77 ETLEIMSERLPKSGCTSFLPTL 98 (380)
T ss_pred HHHHHHHHHHHhcCeeEEeeec
Confidence 4566777889999999999875
No 196
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=29.65 E-value=96 Score=29.74 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHCCCe-EEEeeccch------HHHHHHHHHHHHHHhcC
Q 010613 364 ELESLLSMTMASDKSGLQ-VAIHAIGDR------ANDLVLDMYKSVVVTTG 407 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~-v~iHa~Gd~------av~~~l~a~e~~~~~~g 407 (506)
..+.|..+++.|.++|+. |.+|++.|. .....|+.+++..++.|
T Consensus 44 h~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~ 94 (223)
T PF06415_consen 44 HIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAEIG 94 (223)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHhhC
Confidence 478999999999999986 999998532 33344555655555543
No 197
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.42 E-value=89 Score=25.97 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=32.7
Q ss_pred ecCCcCcccccccCCcCCCCCCCc---------ccCCCHHHHHHHHHHHHHCCCeEEEe
Q 010613 336 ADGSLGSNSALFHEPYADEPHNYG---------LQVMELESLLSMTMASDKSGLQVAIH 385 (506)
Q Consensus 336 ~DG~~~~~ta~l~~pY~d~~~~~G---------~~~~s~e~l~~~~~~a~~~g~~v~iH 385 (506)
+.|......--+.+||.|..++.- .+.-++|.++++.+.+-+++++...-
T Consensus 27 msgivaq~peiigepyrd~agn~ynplsiqpvivls~dqetl~aihrraler~vttsly 85 (135)
T COG4954 27 MSGIVAQSPEIIGEPYRDAAGNTYNPLSIQPVIVLSGDQETLKAIHRRALERKVTTSLY 85 (135)
T ss_pred HhhhhhcCchhcCcccccccCCccCccccceEEEEeCCHHHHHHHHHHHHhcCCCccee
Confidence 344443333456789988755321 12236899999999999999886654
No 198
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=28.81 E-value=86 Score=31.80 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHCCCeEEE-eeccchHHHHHHHHHHHHHHhcCC----CCCCceEeecccCChhHHHHHHhCCCEEEecch
Q 010613 367 SLLSMTMASDKSGLQVAI-HAIGDRANDLVLDMYKSVVVTTGK----RDQRFRIEHAQHLASGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 367 ~l~~~~~~a~~~g~~v~i-Ha~Gd~av~~~l~a~e~~~~~~g~----~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~ 441 (506)
.=+++++++++.|+-+-+ |+ ++++...+++. . +.|. ...|-...|--.+++++++.+++.|-.+-++..
T Consensus 161 ~G~~vV~~mn~lGm~vDvSH~-s~~t~~Dv~~~---s--~~PviaSHSn~ral~~h~RNltDe~iraia~~GGviGi~~~ 234 (320)
T PF01244_consen 161 FGREVVREMNRLGMLVDVSHL-SEKTFWDVLEI---S--KKPVIASHSNARALCPHPRNLTDEQIRAIAERGGVIGINFY 234 (320)
T ss_dssp HHHHHHHHHHHHT-EEE-TTB--HHHHHHHHHH------SSEEEECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEEESS
T ss_pred HHHHHHHHHHHcCCeeeeccC-CHHHHHHHHhh---c--CCCEEEeccChHhhCCCCCCCCHHHHHHHHHCCcEEEEEcc
Confidence 345677778899999855 54 45555544432 2 1121 123334455567789999999999977655543
No 199
>PLN02428 lipoic acid synthase
Probab=28.64 E-value=3.6e+02 Score=27.78 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeec-c------chHHHHHHHHHHHHHHhcCCCCCCceEeec--cc-CChhHHHHHHh
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAI-G------DRANDLVLDMYKSVVVTTGKRDQRFRIEHA--QH-LASGTAARFGD 431 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~-G------d~av~~~l~a~e~~~~~~g~~~~r~~i~H~--~~-i~~~~i~r~a~ 431 (506)
..++++..+.++.+.+.|+. +++.. | |...+...+.++.+++..|. ..++-+ .+ .+++.+++|++
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk-~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~----i~Ie~L~pdf~~d~elL~~L~e 203 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVD-YVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPE----ILVEALVPDFRGDLGAVETVAT 203 (349)
T ss_pred CCChhhHHHHHHHHHHcCCC-EEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCC----cEEEEeCccccCCHHHHHHHHH
Confidence 45678888888888888987 44543 4 44566677777777665542 233222 22 27889999999
Q ss_pred CCCEE
Q 010613 432 QGIVA 436 (506)
Q Consensus 432 lgv~~ 436 (506)
.|+..
T Consensus 204 AG~d~ 208 (349)
T PLN02428 204 SGLDV 208 (349)
T ss_pred cCCCE
Confidence 99844
No 200
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=28.13 E-value=5e+02 Score=27.34 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCcceEEeCccCCCCCcccCchHHHHHHHHHHHhcCCCeeEEEEcc
Q 010613 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFF 304 (506)
Q Consensus 248 ~~~~~~~~~~~~GiTsv~d~~~~~~g~~~~~~~~~~~~~~~~l~~~g~l~~Rv~~~~ 304 (506)
.+...++...++|++.+.-... . +..+++..+.+...+-|. .....+++
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDA----l---ND~RNl~~ai~a~kk~G~-h~q~~i~Y 147 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDA----L---NDVRNLKTAIKAAKKHGA-HVQGTISY 147 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechh----c---cchhHHHHHHHHHHhcCc-eeEEEEEe
Confidence 4555677788999999774331 0 233555566777666664 44433443
No 201
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=28.03 E-value=1.4e+02 Score=30.21 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=46.0
Q ss_pred HHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCC----CCCCceEeecccCChhHHHHHHhCCCEE--Eecch
Q 010613 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGK----RDQRFRIEHAQHLASGTAARFGDQGIVA--SMQVW 441 (506)
Q Consensus 368 l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~----~~~r~~i~H~~~i~~~~i~r~a~lgv~~--s~~P~ 441 (506)
=+++++++++.|+.+-+==.++++...+++. .+.|. ...|....|--.+++++++.+++.|-.+ +.-|.
T Consensus 151 Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~-----s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~ 225 (313)
T COG2355 151 GKELVREMNELGIIIDLSHLSDKTFWDVLDL-----SKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPA 225 (313)
T ss_pred HHHHHHHHHhcCCEEEecccCCccHHHHHhc-----cCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehh
Confidence 3578889999999995433456666666653 11122 1334455566677899999999998654 44455
Q ss_pred h
Q 010613 442 T 442 (506)
Q Consensus 442 ~ 442 (506)
|
T Consensus 226 f 226 (313)
T COG2355 226 F 226 (313)
T ss_pred h
Confidence 4
No 202
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=27.61 E-value=2.1e+02 Score=28.98 Aligned_cols=77 Identities=8% Similarity=0.097 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeec-cch---HH------------HHHHHHHHHHHHhcCCCCCCceEeecccCChhH
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAI-GDR---AN------------DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT 425 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~-Gd~---av------------~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~ 425 (506)
..++|++.+.++.+.+.|+.- +|.. |+. .. ...++.+++..+.... ..+....|+..+++++
T Consensus 40 ~ls~eei~~~~~~~~~~G~~e-i~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~-~g~~~~~~~~~lt~e~ 117 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTE-ALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALE-EGLLPHTNAGILTREE 117 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCE-EEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhh-cCCCccccCCCCCHHH
Confidence 679999999999999999885 6665 322 11 1122333222111100 0122347778899999
Q ss_pred HHHHHhCCCEEEecc
Q 010613 426 AARFGDQGIVASMQV 440 (506)
Q Consensus 426 i~r~a~lgv~~s~~P 440 (506)
+++|++.++.+.+.|
T Consensus 118 i~~Lk~ag~~l~~~~ 132 (336)
T PRK06245 118 MEKLKEVNASMGLML 132 (336)
T ss_pred HHHHHHhCCCCCCCc
Confidence 999999876554433
No 203
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.11 E-value=5.1e+02 Score=25.33 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=52.5
Q ss_pred EEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHH-----------
Q 010613 332 VKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK----------- 400 (506)
Q Consensus 332 vKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e----------- 400 (506)
+.++.-|+.-.|| .||. .+|. ..+.++.+.+.+++.|+++..-......++.+.+...
T Consensus 43 ~~~~r~g~~kpRt----s~~s----f~G~---G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vdilqIgs~~~~n 111 (250)
T PRK13397 43 YNYFRGGAYKPRT----SAAS----FQGL---GLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQVGARNMQN 111 (250)
T ss_pred CCEEEecccCCCC----CCcc----cCCC---CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCCEEEECcccccC
Confidence 4445555555565 3663 4453 4578899999999999999876666566665543110
Q ss_pred -HHHHhcCCCCCCceEeecccCChhHHHHH
Q 010613 401 -SVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (506)
Q Consensus 401 -~~~~~~g~~~~r~~i~H~~~i~~~~i~r~ 429 (506)
...+..+..+....+.-+++.+.+++...
T Consensus 112 ~~LL~~va~tgkPVilk~G~~~t~~e~~~A 141 (250)
T PRK13397 112 FEFLKTLSHIDKPILFKRGLMATIEEYLGA 141 (250)
T ss_pred HHHHHHHHccCCeEEEeCCCCCCHHHHHHH
Confidence 01122233455677777777787776533
No 204
>PLN02389 biotin synthase
Probab=25.85 E-value=3.9e+02 Score=27.84 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=48.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCeE-EEeec----cc--hHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCC
Q 010613 361 QVMELESLLSMTMASDKSGLQV-AIHAI----GD--RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v-~iHa~----Gd--~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lg 433 (506)
..+++|++.+.++.+.+.|+.- ++-+. ++ ...+.+++.+..++ +.+. . .....-.++++++++|++.|
T Consensus 114 ~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik-~~~l---~-i~~s~G~l~~E~l~~LkeAG 188 (379)
T PLN02389 114 KLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIR-GMGM---E-VCCTLGMLEKEQAAQLKEAG 188 (379)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHh-cCCc---E-EEECCCCCCHHHHHHHHHcC
Confidence 3579999999999999998863 33211 12 35677777777765 3332 2 23445568999999999999
Q ss_pred CE
Q 010613 434 IV 435 (506)
Q Consensus 434 v~ 435 (506)
+.
T Consensus 189 ld 190 (379)
T PLN02389 189 LT 190 (379)
T ss_pred CC
Confidence 86
No 205
>PRK05927 hypothetical protein; Provisional
Probab=25.38 E-value=2.3e+02 Score=29.20 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEee-ccc---hHHHHHHHHHHHHHHhcCCCCC----C----ceEeecccCChhHHHH
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHA-IGD---RANDLVLDMYKSVVVTTGKRDQ----R----FRIEHAQHLASGTAAR 428 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa-~Gd---~av~~~l~a~e~~~~~~g~~~~----r----~~i~H~~~i~~~~i~r 428 (506)
..++.|++.+.++.+.+.|..- +|. .|. ...+...+.++.++++++.... . +...-.-..+++++++
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~-i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~ 152 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKT-VLLQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALER 152 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCE-EEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 4679999999999999999853 333 342 3567777888877776642100 0 0112235567899999
Q ss_pred HHhCCC
Q 010613 429 FGDQGI 434 (506)
Q Consensus 429 ~a~lgv 434 (506)
+++.|+
T Consensus 153 Lk~aGl 158 (350)
T PRK05927 153 LWDAGQ 158 (350)
T ss_pred HHHcCc
Confidence 999998
No 206
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.25 E-value=9.7e+02 Score=26.62 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHH-CCCeEEEeeccch--HHHHHHHHHHH
Q 010613 363 MELESLLSMTMASDK-SGLQVAIHAIGDR--ANDLVLDMYKS 401 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~-~g~~v~iHa~Gd~--av~~~l~a~e~ 401 (506)
..++++.++++..++ .++++++|+.-|. |+-..+.+++.
T Consensus 181 l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieA 222 (593)
T PRK14040 181 LKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEA 222 (593)
T ss_pred cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHc
Confidence 467777777776654 4788877776443 66666666654
No 207
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=24.70 E-value=4.6e+02 Score=26.84 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHH-HHHH------------------HHhcC------C-CCCCceE
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM-YKSV------------------VVTTG------K-RDQRFRI 415 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a-~e~~------------------~~~~g------~-~~~r~~i 415 (506)
.+++++++++++.|++.|+.+-+-+......+.++++ -... .+-.+ . ......+
T Consensus 213 iL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~V 292 (338)
T PLN02460 213 VLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVV 292 (338)
T ss_pred hCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEE
Confidence 3578899999999999999976666555566666654 1110 00000 0 0122334
Q ss_pred eecccCChhHHHHHHhCCCEEEec
Q 010613 416 EHAQHLASGTAARFGDQGIVASMQ 439 (506)
Q Consensus 416 ~H~~~i~~~~i~r~a~lgv~~s~~ 439 (506)
.=.-+-+++|+.++++.|+...+-
T Consensus 293 sESGI~t~~Dv~~l~~~GadAvLV 316 (338)
T PLN02460 293 GESGLFTPDDVAYVQNAGVKAVLV 316 (338)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEEE
Confidence 445555678888888887766553
No 208
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.14 E-value=4.7e+02 Score=22.63 Aligned_cols=76 Identities=7% Similarity=0.011 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEEEecchh
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQVWT 442 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~s~~P~~ 442 (506)
.++|+ .++.|.+.+-.+..=+.=+...-.....+-+..++.+.. ....+.-+.. .+++.+.++++|+.-.+.|..
T Consensus 40 ~s~e~---~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~-~i~vivGG~~-~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 40 QTPEE---IARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP-DILVVVGGVI-PPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred CCHHH---HHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCC-CCEEEEeCCC-ChHhHHHHHHCCCCEEECCCC
Confidence 45654 455566777776555543332223333333333444432 2335555444 567899999999998888876
Q ss_pred H
Q 010613 443 T 443 (506)
Q Consensus 443 ~ 443 (506)
.
T Consensus 115 ~ 115 (132)
T TIGR00640 115 P 115 (132)
T ss_pred C
Confidence 3
No 209
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=23.32 E-value=72 Score=31.87 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=19.6
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEe
Q 010613 359 GLQVMELESLLSMTMASDKSGLQVAIH 385 (506)
Q Consensus 359 G~~~~s~e~l~~~~~~a~~~g~~v~iH 385 (506)
|-..++.++++++.+.|+++|+++|+=
T Consensus 138 GG~~~s~~el~ai~~~a~~~gl~lhmD 164 (290)
T PF01212_consen 138 GGTVYSLEELRAISELAREHGLPLHMD 164 (290)
T ss_dssp TSB---HHHHHHHHHHHHHHT-EEEEE
T ss_pred CCeeCCHHHHHHHHHHHHhCceEEEEe
Confidence 334679999999999999999887764
No 210
>PRK05926 hypothetical protein; Provisional
Probab=23.26 E-value=4.1e+02 Score=27.54 Aligned_cols=70 Identities=9% Similarity=0.016 Sum_probs=45.3
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEeec-cc---hHHHHHHHHHHHHHHhcCCCCCCceEeeccc-------------CC
Q 010613 360 LQVMELESLLSMTMASDKSGLQVAIHAI-GD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQH-------------LA 422 (506)
Q Consensus 360 ~~~~s~e~l~~~~~~a~~~g~~v~iHa~-Gd---~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~-------------i~ 422 (506)
....++|++.+.++.+ +.|.. .+|.. |. ...+...+.++..+++.|. .-.|+.. .+
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~-ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p~-----i~i~a~s~~Ei~~~~~~~~~~~ 168 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPIT-ETHIVAGCFPSCNLAYYEELFSKIKQNFPD-----LHIKALTAIEYAYLSKLDNLPV 168 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCC-EEEEEeCcCCCCCHHHHHHHHHHHHHhCCC-----eeEEECCHHHHHHHHhhcCCCH
Confidence 4567899999999988 57743 33433 42 2456666777777666542 3344332 34
Q ss_pred hhHHHHHHhCCCEE
Q 010613 423 SGTAARFGDQGIVA 436 (506)
Q Consensus 423 ~~~i~r~a~lgv~~ 436 (506)
++.++++++.|+.-
T Consensus 169 ~e~l~~LkeAGl~~ 182 (370)
T PRK05926 169 KEVLQTLKIAGLDS 182 (370)
T ss_pred HHHHHHHHHcCcCc
Confidence 67799999999853
No 211
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=23.25 E-value=2e+02 Score=27.33 Aligned_cols=17 Identities=59% Similarity=1.044 Sum_probs=14.7
Q ss_pred EcCCCeeeccccccccc
Q 010613 95 NLQGKVVVPGFIDSHVH 111 (506)
Q Consensus 95 D~~g~~v~PGfiD~H~H 111 (506)
|++|++|+|||||+|+|
T Consensus 1 D~~G~~v~PGlID~H~H 17 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVH 17 (304)
T ss_dssp E-TTSEEEE-EEEEEEE
T ss_pred CCCCCEEccceeeeeeC
Confidence 78999999999999999
No 212
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=23.24 E-value=1.5e+02 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.3
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEeecc
Q 010613 359 GLQVMELESLLSMTMASDKSGLQVAIHAIG 388 (506)
Q Consensus 359 G~~~~s~e~l~~~~~~a~~~g~~v~iHa~G 388 (506)
|.+...++.+.++++.+++.|+.+.++++|
T Consensus 74 GEPll~~~~~~~li~~~~~~g~~~~i~TNG 103 (235)
T TIGR02493 74 GEPLLQPEFLSELFKACKELGIHTCLDTSG 103 (235)
T ss_pred cccccCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 345567778889999999999999999999
No 213
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.10 E-value=8.3e+02 Score=25.09 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcceEE
Q 010613 240 VSVDERREALLRASNLALSRGVTTVV 265 (506)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~GiTsv~ 265 (506)
.+.++..+.+..+++.+.+.|.....
T Consensus 106 ~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 106 KDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 46677777777888888888876443
No 214
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=22.92 E-value=4.1e+02 Score=27.17 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccch---HHHHHHHHHHHHHHhcCCCCCCceEeec-------------ccCChhH
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHA-------------QHLASGT 425 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~---av~~~l~a~e~~~~~~g~~~~r~~i~H~-------------~~i~~~~ 425 (506)
.++.|++.+.++.+.+.|+.-..=+.|+. ..+..++.++..+++.|. .-.|+ ...+++.
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~-----i~i~~~~~~ei~~~~~~~g~~~~e~ 152 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD-----LHVKAFTAVEIHHFSKISGLPTEEV 152 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC-----ceEEeCCHHHHHHHHHHcCCCHHHH
Confidence 46999999999999988875322234532 345677777777666542 22222 2345677
Q ss_pred HHHHHhCCCEE
Q 010613 426 AARFGDQGIVA 436 (506)
Q Consensus 426 i~r~a~lgv~~ 436 (506)
++++++.|+..
T Consensus 153 l~~LkeAGld~ 163 (351)
T TIGR03700 153 LDELKEAGLDS 163 (351)
T ss_pred HHHHHHcCCCc
Confidence 99999999853
No 215
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=22.90 E-value=3.9e+02 Score=26.85 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHCCCe----EEEeec
Q 010613 364 ELESLLSMTMASDKSGLQ----VAIHAI 387 (506)
Q Consensus 364 s~e~l~~~~~~a~~~g~~----v~iHa~ 387 (506)
|.+.|...++.+...|.. +.+|.-
T Consensus 128 Si~~L~~~~~~~~~lG~~~~~~vViHpG 155 (303)
T PRK02308 128 SIKDLEYHAKLLDLMGIDDSSKINIHVG 155 (303)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCC
Confidence 344555555566666655 556643
No 216
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=22.65 E-value=99 Score=31.98 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=26.3
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHCCCeE---EEee
Q 010613 354 EPHNYGLQVMELESLLSMTMASDKSGLQV---AIHA 386 (506)
Q Consensus 354 ~~~~~G~~~~s~e~l~~~~~~a~~~g~~v---~iHa 386 (506)
+|++.+--.++.|+|+++.+.|.++|+.| -||+
T Consensus 166 nPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 166 NPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccc
Confidence 34444444789999999999999999998 4676
No 217
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=22.22 E-value=9.9e+02 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHH-CCCeEEEeeccch--HHHHHHHHHHH
Q 010613 363 MELESLLSMTMASDK-SGLQVAIHAIGDR--ANDLVLDMYKS 401 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~-~g~~v~iHa~Gd~--av~~~l~a~e~ 401 (506)
.+|.+..++++..++ .++++++|+.-+. |+-.++.+++.
T Consensus 179 l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAiea 220 (467)
T PRK14041 179 LTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEA 220 (467)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHh
Confidence 467777777776654 4788888876444 66666666654
No 218
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=22.12 E-value=73 Score=23.10 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=20.4
Q ss_pred CeEEEEecCCchhhhcHHHHHHcCCC
Q 010613 177 NPVWLSRMDGHMGLANSVALQLVGIT 202 (506)
Q Consensus 177 ~Pv~i~~~~~H~~~~Ns~aL~~~gi~ 202 (506)
.+|++.+ ++...++|.++.+++|.+
T Consensus 12 ~~i~i~d-~~~i~~~N~~~~~l~g~~ 36 (64)
T PF13188_consen 12 DGILIID-GGRIIYVNPAFEELFGYS 36 (64)
T ss_dssp SEEEEEE-TSBEEEE-HHHHHHHCS-
T ss_pred cceEEEE-CCChHHhhHHHHHHhCCC
Confidence 4888888 778999999999999975
No 219
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=21.80 E-value=70 Score=24.92 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.0
Q ss_pred eEEEEecCCchhhhcHHHHHHcCCCC
Q 010613 178 PVWLSRMDGHMGLANSVALQLVGITN 203 (506)
Q Consensus 178 Pv~i~~~~~H~~~~Ns~aL~~~gi~~ 203 (506)
++++.+.+|...++|.++++.+|++.
T Consensus 3 ~i~i~d~~g~i~~~N~~~~~~~g~~~ 28 (104)
T PF13426_consen 3 GIFILDPDGRILYVNPAFERLFGYSR 28 (104)
T ss_dssp EEEEEETTSBEEEE-HHHHHHHTS-H
T ss_pred EEEEECCcCcEEehhHHHHHHHCcCH
Confidence 68899999999999999999999853
No 220
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.74 E-value=4.4e+02 Score=27.10 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEee
Q 010613 361 QVMELESLLSMTMASDKSGLQVAIHA 386 (506)
Q Consensus 361 ~~~s~e~l~~~~~~a~~~g~~v~iHa 386 (506)
.+++.+++++.++.|+++|.++.+=.
T Consensus 44 ~nfs~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 44 LNFSVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 36899999999999999999765543
No 221
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=21.59 E-value=7.5e+02 Score=24.24 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHHH------------------Hhc-CCCCCCceEeecccCC
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVV------------------VTT-GKRDQRFRIEHAQHLA 422 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~~------------------~~~-g~~~~r~~i~H~~~i~ 422 (506)
.+++++++++++.|+++|+.+-+-+.-....+.+++.-.+.. +-. ..+..+..+.-...-+
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~ 218 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGIST 218 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCC
Confidence 468899999999999999997655544444444444211110 000 0123355666666667
Q ss_pred hhHHHHHHhCCCEEEecch
Q 010613 423 SGTAARFGDQGIVASMQVW 441 (506)
Q Consensus 423 ~~~i~r~a~lgv~~s~~P~ 441 (506)
++|+.++.+.|+....=..
T Consensus 219 ~~dv~~l~~~ga~a~LVG~ 237 (254)
T COG0134 219 PEDVRRLAKAGADAFLVGE 237 (254)
T ss_pred HHHHHHHHHcCCCEEEecH
Confidence 8999999999888766444
No 222
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=21.54 E-value=1.1e+03 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcc
Q 010613 239 EVSVDERREALLRASNLALSRGVT 262 (506)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~GiT 262 (506)
..+.++..+.+..+++.+.+.|.-
T Consensus 201 ~~s~ee~l~~~~~~V~~Ak~~G~~ 224 (503)
T PLN03228 201 KKTKEEVIEMAVSSIRYAKSLGFH 224 (503)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCc
Confidence 357888888888899999999974
No 223
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.37 E-value=5.4e+02 Score=22.30 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEeec----cchHHHHHHHHHHHHHHhcCCCCCCceEeeccc-CChh----HHHHHHhCC
Q 010613 363 MELESLLSMTMASDKSGLQVAIHAI----GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH-LASG----TAARFGDQG 433 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v~iHa~----Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~-i~~~----~i~r~a~lg 433 (506)
.++|++.+ .|.+++..+-.=.. .....+++++. .++.|..+.. .+.=+.. +.++ +.++++++|
T Consensus 37 v~~e~~v~---aa~~~~adiVglS~L~t~~~~~~~~~~~~----l~~~gl~~v~-vivGG~~~i~~~d~~~~~~~L~~~G 108 (128)
T cd02072 37 SPQEEFID---AAIETDADAILVSSLYGHGEIDCKGLREK----CDEAGLKDIL-LYVGGNLVVGKQDFEDVEKRFKEMG 108 (128)
T ss_pred CCHHHHHH---HHHHcCCCEEEEeccccCCHHHHHHHHHH----HHHCCCCCCe-EEEECCCCCChhhhHHHHHHHHHcC
Confidence 45665544 45566655422111 12233333333 3445554433 3333333 3433 457899999
Q ss_pred CEEEecchh
Q 010613 434 IVASMQVWT 442 (506)
Q Consensus 434 v~~s~~P~~ 442 (506)
+...+-|..
T Consensus 109 v~~vf~pgt 117 (128)
T cd02072 109 FDRVFAPGT 117 (128)
T ss_pred CCEEECcCC
Confidence 998887764
No 224
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.22 E-value=5.2e+02 Score=26.50 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHCCCeE-EEeeccchHHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHH----HHHhCCCEEE
Q 010613 363 MELESLLSMTMASDKSGLQV-AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAA----RFGDQGIVAS 437 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~~g~~v-~iHa~Gd~av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~----r~a~lgv~~s 437 (506)
.+++++.+.++.+.+.|++. .+|..++...+.-++.++++++..|. +.+..+.-.+..+.++.. ++.++++...
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~-~~~l~vDan~~~~~~~A~~~~~~l~~~~l~~i 220 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGP-DMRLMHDGAHWYSRADALRLGRALEELGFFWY 220 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCC-CCeEEEECCCCcCHHHHHHHHHHhhhcCCCeE
Confidence 36788888888888999884 57754443345556677777766654 445566444444555443 4456677666
Q ss_pred ecchh
Q 010613 438 MQVWT 442 (506)
Q Consensus 438 ~~P~~ 442 (506)
=||..
T Consensus 221 EeP~~ 225 (368)
T cd03329 221 EDPLR 225 (368)
T ss_pred eCCCC
Confidence 67764
No 225
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.83 E-value=7.5e+02 Score=23.68 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCCcEEEceEEEeecCCcCcccccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEeeccchHHHHHHHHHHHH
Q 010613 323 LSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSV 402 (506)
Q Consensus 323 ~~~~l~~~gvKl~~DG~~~~~ta~l~~pY~d~~~~~G~~~~s~e~l~~~~~~a~~~g~~v~iHa~Gd~av~~~l~a~e~~ 402 (506)
+.+|+.++ .+||..- |- .++.++.++++-+ .-.+++.+|..=..- +..++.+.++
T Consensus 29 gad~iH~D----VMDghFV--------PN---------iTfGp~~v~~l~~---~t~~p~DvHLMV~~p-~~~i~~fa~a 83 (220)
T COG0036 29 GADLIHID----VMDGHFV--------PN---------ITFGPPVVKALRK---ITDLPLDVHLMVENP-DRYIEAFAKA 83 (220)
T ss_pred CCCEEEEe----ccCCCcC--------CC---------cccCHHHHHHHhh---cCCCceEEEEecCCH-HHHHHHHHHh
Confidence 45778776 6788743 11 2345666655443 336899999763332 3445555444
Q ss_pred HHhcCCCCCCceEeecccCC---hhHHHHHHhCCC--EEEecchh
Q 010613 403 VVTTGKRDQRFRIEHAQHLA---SGTAARFGDQGI--VASMQVWT 442 (506)
Q Consensus 403 ~~~~g~~~~r~~i~H~~~i~---~~~i~r~a~lgv--~~s~~P~~ 442 (506)
+....-.|.+ .+ .+.+++++++|+ .++++|..
T Consensus 84 -------gad~It~H~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~T 120 (220)
T COG0036 84 -------GADIITFHAE-ATEHIHRTIQLIKELGVKAGLVLNPAT 120 (220)
T ss_pred -------CCCEEEEEec-cCcCHHHHHHHHHHcCCeEEEEECCCC
Confidence 2345788888 44 367888999987 46888886
No 226
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.27 E-value=7.4e+02 Score=24.09 Aligned_cols=71 Identities=6% Similarity=-0.040 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHC--CCeEEEeec-cch----HHHHHHHHHHHHHHhcCCCCCCceEeecccCC--hhHHHHHHhCCC
Q 010613 364 ELESLLSMTMASDKS--GLQVAIHAI-GDR----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGI 434 (506)
Q Consensus 364 s~e~l~~~~~~a~~~--g~~v~iHa~-Gd~----av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~--~~~i~r~a~lgv 434 (506)
+.+.+-+.++..++. ++++. |.. -+. ..+..++.+ ++.|. .-.+.|-.-.. .+.++++++.|+
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~----~~aGv---dgviipDlp~ee~~~~~~~~~~~gl 141 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKC----KEVGV---DGVLVADLPLEESGDLVEAAKKHGV 141 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHH----HHcCC---CEEEECCCChHHHHHHHHHHHHCCC
Confidence 445555666665543 67765 543 222 223333322 23332 34666644322 245567788886
Q ss_pred E--EEecchh
Q 010613 435 V--ASMQVWT 442 (506)
Q Consensus 435 ~--~s~~P~~ 442 (506)
. ..+.|..
T Consensus 142 ~~i~lv~P~T 151 (256)
T TIGR00262 142 KPIFLVAPNA 151 (256)
T ss_pred cEEEEECCCC
Confidence 4 3556655
No 227
>PRK07094 biotin synthase; Provisional
Probab=20.23 E-value=4.4e+02 Score=26.35 Aligned_cols=71 Identities=10% Similarity=0.131 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeccc-h--HHHHHHHHHHHHHHhcCCCCCCceEeecccCChhHHHHHHhCCCEE
Q 010613 362 VMELESLLSMTMASDKSGLQVAIHAIGD-R--ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (506)
Q Consensus 362 ~~s~e~l~~~~~~a~~~g~~v~iHa~Gd-~--av~~~l~a~e~~~~~~g~~~~r~~i~H~~~i~~~~i~r~a~lgv~~ 436 (506)
..+++++.+.++.+.+.|+.-..=..|+ . ..+...+.++.+.++.+ .... .+....+++.+++|++.|+.-
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~---l~i~-~~~g~~~~e~l~~Lk~aG~~~ 142 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELD---VAIT-LSLGERSYEEYKAWKEAGADR 142 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCC---ceEE-EecCCCCHHHHHHHHHcCCCE
Confidence 3589999999998888888642222342 2 34555666666554322 2222 245557899999999999863
No 228
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=20.13 E-value=1.1e+03 Score=25.23 Aligned_cols=39 Identities=8% Similarity=0.078 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHH-CCCeEEEeeccch--HHHHHHHHHHH
Q 010613 363 MELESLLSMTMASDK-SGLQVAIHAIGDR--ANDLVLDMYKS 401 (506)
Q Consensus 363 ~s~e~l~~~~~~a~~-~g~~v~iHa~Gd~--av~~~l~a~e~ 401 (506)
.+|++..++++..++ .++++++|+.-+. |+-.++.+++.
T Consensus 180 l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAiea 221 (448)
T PRK12331 180 LTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEA 221 (448)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHc
Confidence 467777777776654 4788888876443 66666777654
Done!