Query 010616
Match_columns 506
No_of_seqs 212 out of 1957
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 1.1E-65 2.4E-70 544.4 43.2 365 27-506 63-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 1.6E-62 3.4E-67 501.3 38.5 324 79-504 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 1.3E-62 2.9E-67 500.1 36.6 317 75-504 1-317 (317)
4 cd05486 Cathespin_E Cathepsin 100.0 5.4E-62 1.2E-66 495.4 35.9 316 85-504 1-316 (316)
5 cd05487 renin_like Renin stimu 100.0 1.5E-61 3.3E-66 494.1 39.0 325 77-505 1-326 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.1E-60 2.3E-65 488.4 38.4 327 75-504 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 2.2E-60 4.8E-65 483.8 37.2 316 76-504 2-317 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 4.8E-60 1E-64 481.9 37.8 320 75-504 1-320 (320)
9 cd05477 gastricsin Gastricsins 100.0 8.9E-60 1.9E-64 479.6 39.0 317 82-505 1-318 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 1.6E-58 3.4E-63 486.4 39.6 324 70-506 125-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 6.4E-58 1.4E-62 480.8 42.4 324 70-506 124-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 3.9E-55 8.4E-60 443.9 30.2 316 84-505 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 7E-52 1.5E-56 413.7 31.1 272 85-504 1-278 (278)
14 cd05473 beta_secretase_like Be 100.0 1.4E-50 3E-55 419.5 31.6 316 83-506 2-346 (364)
15 KOG1339 Aspartyl protease [Pos 100.0 3.3E-50 7.2E-55 420.9 32.3 320 73-505 35-392 (398)
16 PLN03146 aspartyl protease fam 100.0 2.5E-49 5.5E-54 416.9 33.9 304 81-505 81-426 (431)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.9E-49 4.2E-54 404.9 30.1 282 83-505 2-323 (326)
18 cd05474 SAP_like SAPs, pepsin- 100.0 6.9E-49 1.5E-53 395.0 33.1 278 84-505 2-295 (295)
19 cd05472 cnd41_like Chloroplast 100.0 2.1E-48 4.5E-53 392.7 29.2 287 84-505 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 7.4E-46 1.6E-50 369.5 34.5 279 85-504 1-283 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2E-45 4.4E-50 364.7 28.3 248 84-506 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 2.2E-45 4.8E-50 365.9 28.7 258 83-506 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 1.8E-41 3.8E-46 349.9 27.3 314 91-505 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 4.3E-22 9.4E-27 170.4 13.3 108 87-195 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 6.5E-21 1.4E-25 175.4 16.2 136 85-243 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 6E-18 1.3E-22 155.3 13.6 153 263-504 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.0 2.4E-05 5.3E-10 64.4 7.1 92 84-197 2-94 (96)
28 PF05184 SapB_1: Saposin-like 97.8 2.3E-05 5E-10 53.8 3.5 38 378-415 2-39 (39)
29 PF03489 SapB_2: Saposin-like 97.7 1E-05 2.2E-10 54.2 0.3 34 318-351 2-35 (35)
30 TIGR02281 clan_AA_DTGA clan AA 97.2 0.0022 4.8E-08 55.8 9.2 101 75-197 2-103 (121)
31 PF13650 Asp_protease_2: Aspar 96.5 0.016 3.5E-07 46.7 8.6 87 88-196 2-89 (90)
32 KOG1340 Prosaposin [Lipid tran 96.2 0.0051 1.1E-07 58.6 4.0 87 319-415 78-166 (218)
33 COG3577 Predicted aspartyl pro 95.5 0.083 1.8E-06 49.4 8.8 91 71-176 92-183 (215)
34 cd05479 RP_DDI RP_DDI; retrope 95.2 0.11 2.4E-06 45.2 8.6 92 81-197 13-107 (124)
35 PF11925 DUF3443: Protein of u 95.1 0.24 5.3E-06 50.5 11.4 196 86-301 25-272 (370)
36 cd05484 retropepsin_like_LTR_2 93.7 0.3 6.6E-06 39.8 7.3 75 85-177 1-78 (91)
37 cd05479 RP_DDI RP_DDI; retrope 93.4 0.52 1.1E-05 41.0 8.7 25 478-502 100-124 (124)
38 PF08284 RVP_2: Retroviral asp 92.8 0.32 7E-06 43.1 6.5 27 478-504 105-131 (135)
39 TIGR02281 clan_AA_DTGA clan AA 92.1 4.5 9.8E-05 35.0 12.7 37 260-306 8-44 (121)
40 smart00741 SapB Saposin (B) Do 91.7 0.19 4E-06 38.9 3.3 37 379-415 2-38 (76)
41 KOG1340 Prosaposin [Lipid tran 90.5 0.12 2.5E-06 49.4 1.2 47 310-356 162-208 (218)
42 smart00741 SapB Saposin (B) Do 90.2 0.12 2.6E-06 40.0 0.9 37 315-351 40-76 (76)
43 cd06095 RP_RTVL_H_like Retrope 88.6 2.7 5.9E-05 33.8 7.8 81 88-197 2-84 (86)
44 PF07966 A1_Propeptide: A1 Pro 87.0 0.69 1.5E-05 29.4 2.6 27 28-54 1-27 (29)
45 TIGR03698 clan_AA_DTGF clan AA 82.7 7.7 0.00017 32.8 7.9 24 477-500 84-107 (107)
46 PF13975 gag-asp_proteas: gag- 81.4 2.4 5.2E-05 33.0 4.0 34 81-116 5-38 (72)
47 PF13650 Asp_protease_2: Aspar 77.4 3.6 7.7E-05 32.7 4.1 29 271-306 3-31 (90)
48 PF00077 RVP: Retroviral aspar 73.7 4.3 9.3E-05 33.3 3.7 29 86-116 7-35 (100)
49 cd05484 retropepsin_like_LTR_2 71.0 6.1 0.00013 32.0 4.0 29 271-306 5-33 (91)
50 PF13975 gag-asp_proteas: gag- 70.7 7.2 0.00016 30.3 4.1 29 271-306 13-41 (72)
51 PF12384 Peptidase_A2B: Ty3 tr 70.3 21 0.00045 32.6 7.3 27 284-310 45-71 (177)
52 cd05483 retropepsin_like_bacte 65.0 10 0.00022 30.4 4.1 29 271-306 7-35 (96)
53 cd06095 RP_RTVL_H_like Retrope 64.1 9.5 0.00021 30.6 3.7 29 271-306 3-31 (86)
54 PF09668 Asp_protease: Asparty 60.2 15 0.00033 32.0 4.5 79 82-176 22-102 (124)
55 PF02160 Peptidase_A3: Caulifl 59.4 13 0.00029 35.1 4.3 50 431-503 67-116 (201)
56 PF08284 RVP_2: Retroviral asp 57.6 63 0.0014 28.4 8.1 91 83-197 20-112 (135)
57 PF07172 GRP: Glycine rich pro 56.9 8.1 0.00018 32.0 2.1 24 1-24 1-24 (95)
58 cd05482 HIV_retropepsin_like R 56.4 16 0.00035 29.7 3.7 27 88-116 2-28 (87)
59 PF00077 RVP: Retroviral aspar 51.9 12 0.00025 30.7 2.4 26 271-303 10-35 (100)
60 COG5550 Predicted aspartyl pro 50.8 46 0.001 28.9 5.8 20 287-306 29-49 (125)
61 COG3577 Predicted aspartyl pro 39.9 39 0.00085 32.0 4.0 36 261-306 103-138 (215)
62 cd05481 retropepsin_like_LTR_1 38.6 35 0.00075 28.0 3.1 22 286-307 12-33 (93)
63 PF09668 Asp_protease: Asparty 37.8 43 0.00093 29.2 3.7 29 271-306 29-57 (124)
64 PF12384 Peptidase_A2B: Ty3 tr 36.7 42 0.00091 30.7 3.5 29 86-114 34-62 (177)
65 KOG2404 Fumarate reductase, fl 36.2 83 0.0018 32.2 5.8 40 293-349 317-356 (477)
66 PRK10853 putative reductase; P 30.4 52 0.0011 28.3 3.0 34 376-409 6-48 (118)
67 cd03033 ArsC_15kD Arsenate Red 29.4 51 0.0011 28.1 2.8 35 376-410 6-49 (113)
68 TIGR00014 arsC arsenate reduct 26.4 49 0.0011 28.1 2.2 35 376-410 5-48 (114)
69 TIGR03698 clan_AA_DTGF clan AA 25.2 76 0.0016 26.7 3.1 66 87-168 2-73 (107)
70 TIGR01616 nitro_assoc nitrogen 24.5 58 0.0013 28.4 2.3 35 376-410 7-50 (126)
71 PRK10026 arsenate reductase; P 24.3 54 0.0012 29.2 2.1 36 375-410 7-51 (141)
72 COG1393 ArsC Arsenate reductas 23.5 70 0.0015 27.5 2.6 35 376-410 7-50 (117)
73 cd03034 ArsC_ArsC Arsenate Red 22.4 65 0.0014 27.2 2.2 35 376-410 5-48 (112)
74 cd03035 ArsC_Yffb Arsenate Red 21.8 86 0.0019 26.2 2.8 34 376-409 5-47 (105)
75 cd06094 RP_Saci_like RP_Saci_l 21.4 3.4E+02 0.0074 22.2 6.0 22 96-117 8-29 (89)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.1e-65 Score=544.35 Aligned_cols=365 Identities=35% Similarity=0.664 Sum_probs=306.3
Q ss_pred CeEEEeeeeecCchhhhHHhh---hhhHhhhccCCcccccccccCCCCceeEeceecCCceEEEEEEecCCCceEEEEec
Q 010616 27 GLRRIGLKKRRLDLHSLNAAR---ITRKERYMGGAGVSGVRHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFD 103 (506)
Q Consensus 27 ~~~~ipl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lD 103 (506)
+++||||+|.++.++...+.+ +..++.. .|.+...+.........++|.|+.|.+|+++|+||||||+|.|++|
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~D 139 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLT---KHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFD 139 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhh---ccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEe
Confidence 689999999887766543331 1111111 1111110100001346799999999999999999999999999999
Q ss_pred CCCCceEEeCCCCCCCcccccCCCcCCCCCCCcee--cCc---eEEEEeCCCcEEEEEEEEEEEECcEEecccEEEEEEE
Q 010616 104 TGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTE--IGK---SCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATR 178 (506)
Q Consensus 104 TGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~--~~~---~~~~~Y~~Gs~~G~~~~Dtv~~gg~~~~~~~Fg~~~~ 178 (506)
|||+++||++..|. +..|..|+.|++++|+||+. .+. .+.++|++|++.|.+++|+|++|+..+++|.||+++.
T Consensus 140 TGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~ 218 (482)
T PTZ00165 140 TGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIE 218 (482)
T ss_pred CCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEe
Confidence 99999999999997 56899999999999999998 554 6789999999999999999999999999999999998
Q ss_pred eCCccccccceeeeeecccccc---ccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEECCCCCCCc--ccce
Q 010616 179 EGSLTFLLARFDGIIGLGFREI---AVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF--KGKH 253 (506)
Q Consensus 179 ~~~~~~~~~~~dGIlGLg~~~~---s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgiD~~~~--~G~l 253 (506)
.++..|....+|||||||++.. +.....|++++|++||+|++++||+||.++. ..+|+|+|||+|+.++ .|++
T Consensus 219 ~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~--~~~G~l~fGGiD~~~~~~~g~i 296 (482)
T PTZ00165 219 ESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL--NQPGSISFGSADPKYTLEGHKI 296 (482)
T ss_pred ccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC--CCCCEEEeCCcCHHHcCCCCce
Confidence 7665677778999999999887 3345789999999999999999999998653 2379999999999777 5789
Q ss_pred EEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccchhhhhhcchhhHH
Q 010616 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWD 333 (506)
Q Consensus 254 ~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~y~~~~~~ 333 (506)
.|+|+.+.+||+|.+++|+++++.+..+..++.+++||||+++++|++++++|.+++++.
T Consensus 297 ~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------------- 356 (482)
T PTZ00165 297 WWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------------- 356 (482)
T ss_pred EEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------------
Confidence 999999999999999999999988776667889999999999999999999999887543
Q ss_pred HHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhHHHHHHhhhhhccC
Q 010616 334 LLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDS 413 (506)
Q Consensus 334 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 413 (506)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEecCCCCCCCCcEEEEECCE-----EEEECcccceeeec--cCccceeEeeeeeccCCCCCCCceEeCHHhh
Q 010616 414 LPNPMGESIIDCDRIPTMPNVSFTIGDK-----IFNLSPEQYILKTG--EGIAEVCISGFMAFDLPPPRGPLWILGDVFM 486 (506)
Q Consensus 414 ~~~~~~~~~~~C~~~~~~P~l~f~~gg~-----~~~l~~~~yi~~~~--~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl 486 (506)
.+|+.+..+|+|+|+|+|. +|+++|++|+++.. ......|+++|+..+.+.+.++.||||++||
T Consensus 357 ---------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Fl 427 (482)
T PTZ00165 357 ---------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFI 427 (482)
T ss_pred ---------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhh
Confidence 2788778899999999764 89999999999742 3344689999999887666778999999999
Q ss_pred cceEEEEeCCCCeEEEEecC
Q 010616 487 GVYHTVFDSGKLRIGFAEAA 506 (506)
Q Consensus 487 ~~~y~vfD~~~~rIGfA~~~ 506 (506)
|+||+|||.+++|||||+++
T Consensus 428 r~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 428 RKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred eeEEEEEeCCCCEEEEEeec
Confidence 99999999999999999975
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.6e-62 Score=501.26 Aligned_cols=324 Identities=53% Similarity=1.050 Sum_probs=286.5
Q ss_pred ecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCC-CcccccCCCcCCCCCCCceecCceEEEEeCCCcEEEEEE
Q 010616 79 NFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFS 157 (506)
Q Consensus 79 n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G~~~ 157 (506)
|+.+.+|+++|.||||||+|.|++||||+++||+|..|.. ...|..++.|+|++|+||+..++.|.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4668999999999999999999999999999999999963 247888999999999999999999999999999999999
Q ss_pred EEEEEECcEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCc
Q 010616 158 QDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGG 237 (506)
Q Consensus 158 ~Dtv~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G 237 (506)
+|+|++|+..++++.||+++...+..|.....+||||||++..+.....|++++|++||.|.+++||+||.+..+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998876544555678999999999888777789999999999999999999998754334579
Q ss_pred EEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCcccc
Q 010616 238 EIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVS 317 (506)
Q Consensus 238 ~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~ 317 (506)
+|+|||+|+++|.|++.|+|+.+..+|.|.+++|+|++... .+..+..++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999998899999999999988643 2445678999999999999999999999888543
Q ss_pred ccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhhhh
Q 010616 318 AECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQK 397 (506)
Q Consensus 318 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (506)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCCCC
Q 010616 398 QTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 477 (506)
Q Consensus 398 ~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~ 477 (506)
+...+.|.++|+....+|+|+|+|+|+.|+|+|++|+++........|+++|+..+...+.++
T Consensus 236 -----------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~ 298 (325)
T cd05490 236 -----------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGP 298 (325)
T ss_pred -----------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCc
Confidence 112356889999888899999999999999999999997655445689999988776555567
Q ss_pred ceEeCHHhhcceEEEEeCCCCeEEEEe
Q 010616 478 LWILGDVFMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 478 ~~ilG~~fl~~~y~vfD~~~~rIGfA~ 504 (506)
.||||++|||++|+|||++++|||||+
T Consensus 299 ~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 299 LWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred eEEEChHhheeeEEEEEcCCcEeeccC
Confidence 899999999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.3e-62 Score=500.05 Aligned_cols=317 Identities=78% Similarity=1.376 Sum_probs=284.4
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcEEE
Q 010616 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISG 154 (506)
Q Consensus 75 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G 154 (506)
|+|.|+.+.+|+++|+||||||++.|++||||+++||+|..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57889999999999999999999999999999999999999964568999999999999999999999999999999999
Q ss_pred EEEEEEEEECcEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCC
Q 010616 155 FFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE 234 (506)
Q Consensus 155 ~~~~Dtv~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~ 234 (506)
.+++|+|++|+..++++.||++.......|.....+||||||++..+..+..|++++|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776555666778999999999887777788999999999999999999998754334
Q ss_pred CCcEEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCc
Q 010616 235 EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEG 314 (506)
Q Consensus 235 ~~G~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~ 314 (506)
.+|+|+|||+|+++|.|+++|+|+...++|.+.+++|+|+++.+..+.....++|||||+++++|+++++++.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5899999999999999999999999889999999999999998776667788999999999999997665431
Q ss_pred cccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHh
Q 010616 315 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQL 394 (506)
Q Consensus 315 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (506)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCC
Q 010616 395 KQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 474 (506)
Q Consensus 395 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~ 474 (506)
+.+||+.+.++|+|+|+|+|+.|+|+|++|+++..++....|+++|+..+...+
T Consensus 234 --------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~ 287 (317)
T cd06098 234 --------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPP 287 (317)
T ss_pred --------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCC
Confidence 236898877899999999999999999999998765555689999988765555
Q ss_pred CCCceEeCHHhhcceEEEEeCCCCeEEEEe
Q 010616 475 RGPLWILGDVFMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 475 ~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~ 504 (506)
.++.||||++|||++|+|||++++|||||+
T Consensus 288 ~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 288 RGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 567899999999999999999999999995
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=5.4e-62 Score=495.40 Aligned_cols=316 Identities=47% Similarity=0.910 Sum_probs=281.5
Q ss_pred EEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcEEEEEEEEEEEEC
Q 010616 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEVG 164 (506)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G~~~~Dtv~~g 164 (506)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 5689999999999999999999999999999999999999999999
Q ss_pred cEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEECCC
Q 010616 165 DVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244 (506)
Q Consensus 165 g~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgi 244 (506)
+..++++.||++....+..|.....+||||||++..+.....|++++|++||+|++++||+||++.++...+|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877665445556789999999998887777889999999999999999999997644445899999999
Q ss_pred CCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccchhhh
Q 010616 245 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVV 324 (506)
Q Consensus 245 D~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~~~~ 324 (506)
|+++|.|++.|+|+.+.++|.|.+++|+|+++.+. ++.+..++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998764 345678999999999999999999998877543
Q ss_pred hhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhHHHHH
Q 010616 325 SQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVL 404 (506)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (506)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCCCCceEeCHH
Q 010616 405 SYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDV 484 (506)
Q Consensus 405 ~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~ 484 (506)
...+.|.+||+....+|+|+|+|+|+.++|+|++|++.....+...|+++|+..+..+..++.||||++
T Consensus 228 -----------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~ 296 (316)
T cd05486 228 -----------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDV 296 (316)
T ss_pred -----------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchH
Confidence 113568899998888999999999999999999999875333446899999887654445668999999
Q ss_pred hhcceEEEEeCCCCeEEEEe
Q 010616 485 FMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 485 fl~~~y~vfD~~~~rIGfA~ 504 (506)
|||++|+|||.+++|||||+
T Consensus 297 flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 297 FIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred HhcceEEEEeCCCCEeeccC
Confidence 99999999999999999996
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.5e-61 Score=494.14 Aligned_cols=325 Identities=45% Similarity=0.935 Sum_probs=288.6
Q ss_pred ceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCC-cccccCCCcCCCCCCCceecCceEEEEeCCCcEEEE
Q 010616 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFS-ISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGF 155 (506)
Q Consensus 77 l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~-~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G~ 155 (506)
|+|+.+..|+++|+||||||+++|++||||+++||++..|..+ ..|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 4678899999999999999999999999999999999999632 478889999999999999999999999999999999
Q ss_pred EEEEEEEECcEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCC
Q 010616 156 FSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235 (506)
Q Consensus 156 ~~~Dtv~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~ 235 (506)
+++|+|++++..+. +.||++.......|.....+||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998874 88999987654445556789999999988777777899999999999999999999987643345
Q ss_pred CcEEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCcc
Q 010616 236 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGV 315 (506)
Q Consensus 236 ~G~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~ 315 (506)
.|+|+|||+|+++|.|+++|+|+...++|+|.+++++++++.+. +..+..++|||||+++++|.++++++.+++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 89999999999999999999999989999999999999998764 3456789999999999999999999999886541
Q ss_pred ccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhh
Q 010616 316 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLK 395 (506)
Q Consensus 316 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (506)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCC
Q 010616 396 QKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 475 (506)
Q Consensus 396 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~ 475 (506)
..+.|.+||+....+|+|+|+|+|++|+|++++|+++..+.....|+++|+..+...+.
T Consensus 238 ---------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~ 296 (326)
T cd05487 238 ---------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPT 296 (326)
T ss_pred ---------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCC
Confidence 03568899999888999999999999999999999987655567899999987754455
Q ss_pred CCceEeCHHhhcceEEEEeCCCCeEEEEec
Q 010616 476 GPLWILGDVFMGVYHTVFDSGKLRIGFAEA 505 (506)
Q Consensus 476 ~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~ 505 (506)
++.||||++|||++|+|||++++|||||+|
T Consensus 297 ~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 297 GPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 678999999999999999999999999986
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.1e-60 Score=488.38 Aligned_cols=327 Identities=54% Similarity=1.038 Sum_probs=289.9
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCC-cccccCCCcCCCCCCCceecCceEEEEeCCCcEE
Q 010616 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFS-ISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSIS 153 (506)
Q Consensus 75 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~-~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~ 153 (506)
.+|+|+.+..|+++|+||||+|++.|++||||+++||+|..|..+ ..|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 478899999999999999999999999999999999999999632 3688888999999999999999999999999999
Q ss_pred EEEEEEEEEECcEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCC
Q 010616 154 GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDA 233 (506)
Q Consensus 154 G~~~~Dtv~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~ 233 (506)
|.+++|++++|+..++++.||++....+..|.....+||||||++..+.....|++.+|++||+|++++||+||.+.+..
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876554455567899999999988776778899999999999999999999876433
Q ss_pred CCCcEEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCC
Q 010616 234 EEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313 (506)
Q Consensus 234 ~~~G~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~ 313 (506)
...|+|+|||+|+++|.|+++|+|+...++|.|.+++++++++... ..+..++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 4579999999999999999999999989999999999999998763 46678999999999999999999999888654
Q ss_pred ccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHH
Q 010616 314 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQ 393 (506)
Q Consensus 314 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (506)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCC
Q 010616 394 LKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPP 473 (506)
Q Consensus 394 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~ 473 (506)
...+.|.+||+....+|.|+|+|+|++|.|+|++|+++....+...|+++|+..+..+
T Consensus 241 ----------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~ 298 (329)
T cd05485 241 ----------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPP 298 (329)
T ss_pred ----------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCC
Confidence 1125688999988889999999999999999999999876555578999998776554
Q ss_pred CCCCceEeCHHhhcceEEEEeCCCCeEEEEe
Q 010616 474 PRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 474 ~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~ 504 (506)
..++.||||++|||++|+|||++++|||||+
T Consensus 299 ~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 299 PAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5566899999999999999999999999985
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.2e-60 Score=483.78 Aligned_cols=316 Identities=45% Similarity=0.893 Sum_probs=282.2
Q ss_pred eceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcEEEE
Q 010616 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGF 155 (506)
Q Consensus 76 ~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G~ 155 (506)
||+|+.+..|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999997 4579889999999999999999999999999999999
Q ss_pred EEEEEEEECcEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCC
Q 010616 156 FSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235 (506)
Q Consensus 156 ~~~Dtv~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~ 235 (506)
+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+.. ..
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~--~~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG--QQ 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC--CC
Confidence 9999999999999999999998765533333457999999998887777788999999999999999999999863 23
Q ss_pred CcEEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCcc
Q 010616 236 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGV 315 (506)
Q Consensus 236 ~G~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~ 315 (506)
+|+|+|||+|+++|.|+++|+|+....+|.|.+++++|+++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999989999999999999999875 3456789999999999999999999999886540
Q ss_pred ccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhh
Q 010616 316 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLK 395 (506)
Q Consensus 316 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (506)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCC
Q 010616 396 QKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 475 (506)
Q Consensus 396 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~ 475 (506)
...+.|.+||+....+|.|+|+|+|++|+|+|++|+.+. ...|++.|+..+ .
T Consensus 237 --------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~----~ 288 (317)
T cd05478 237 --------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG----L 288 (317)
T ss_pred --------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC----C
Confidence 123568899998888999999999999999999999864 358999887542 2
Q ss_pred CCceEeCHHhhcceEEEEeCCCCeEEEEe
Q 010616 476 GPLWILGDVFMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 476 ~~~~ilG~~fl~~~y~vfD~~~~rIGfA~ 504 (506)
.+.||||++|||++|+|||++++|||||+
T Consensus 289 ~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 289 GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 45799999999999999999999999996
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4.8e-60 Score=481.90 Aligned_cols=320 Identities=45% Similarity=0.875 Sum_probs=285.1
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcEEE
Q 010616 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISG 154 (506)
Q Consensus 75 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G 154 (506)
+||.|+.+..|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|++++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5788999999999999999999999999999999999999997 557998899999999999999999999999999999
Q ss_pred EEEEEEEEECcEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCC
Q 010616 155 FFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE 234 (506)
Q Consensus 155 ~~~~Dtv~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~ 234 (506)
.+++|++++++..++++.||++....+..+.....+||||||++..+.....+.+.+|++||+|++++||+||++.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998766554555678999999999887766778889999999999999999999853 2
Q ss_pred CCcEEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCc
Q 010616 235 EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEG 314 (506)
Q Consensus 235 ~~G~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~ 314 (506)
..|+|+|||+|++++.|+++|+|+...++|.+.+++|++|++.+.. .+..++|||||+++++|+++++++.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987753 45679999999999999999999998886540
Q ss_pred cccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHh
Q 010616 315 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQL 394 (506)
Q Consensus 315 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (506)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCC
Q 010616 395 KQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 474 (506)
Q Consensus 395 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~ 474 (506)
...+.|.+||+....+|.|+|+|+|++|.|+|++|+++.. +.|++.|...+.+..
T Consensus 236 ---------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~~~~~ 290 (320)
T cd05488 236 ---------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMDFPEP 290 (320)
T ss_pred ---------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECcCCCC
Confidence 1245688999988889999999999999999999998532 479999987765444
Q ss_pred CCCceEeCHHhhcceEEEEeCCCCeEEEEe
Q 010616 475 RGPLWILGDVFMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 475 ~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~ 504 (506)
.++.||||++|||++|+|||++++|||||+
T Consensus 291 ~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 291 VGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 456899999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=8.9e-60 Score=479.58 Aligned_cols=317 Identities=43% Similarity=0.859 Sum_probs=282.0
Q ss_pred CceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcEEEEEEEEEE
Q 010616 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNV 161 (506)
Q Consensus 82 ~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G~~~~Dtv 161 (506)
|..|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 4579999999999999999999999999999999999999999
Q ss_pred EECcEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEE
Q 010616 162 EVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVF 241 (506)
Q Consensus 162 ~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~f 241 (506)
++|+..++++.|||+....+..+.....+||||||++..+.....+++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765544545667999999999888777789999999999999999999998753 234799999
Q ss_pred CCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccch
Q 010616 242 GGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK 321 (506)
Q Consensus 242 GgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~ 321 (506)
||+|++++.|++.|+|+.+.++|.|.+++++++++....+..+..++|||||+++++|++++++|.+.+++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~-------- 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ-------- 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc--------
Confidence 999999999999999999999999999999999988765566778999999999999999999999988654
Q ss_pred hhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhHH
Q 010616 322 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE 401 (506)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (506)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCCC-CceE
Q 010616 402 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWI 480 (506)
Q Consensus 402 ~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~-~~~i 480 (506)
....+.|.+||+....+|.|+|+|+|+++.|++++|+.+. ...|+++|+..+.+...+ +.||
T Consensus 231 -------------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~~i 293 (318)
T cd05477 231 -------------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPLWI 293 (318)
T ss_pred -------------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCceEE
Confidence 0123568899998888999999999999999999999863 258999897655433223 5799
Q ss_pred eCHHhhcceEEEEeCCCCeEEEEec
Q 010616 481 LGDVFMGVYHTVFDSGKLRIGFAEA 505 (506)
Q Consensus 481 lG~~fl~~~y~vfD~~~~rIGfA~~ 505 (506)
||++|||++|++||++++|||||+|
T Consensus 294 lG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 294 LGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EcHHHhhheEEEEeCCCCEEeeeeC
Confidence 9999999999999999999999986
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.6e-58 Score=486.36 Aligned_cols=324 Identities=34% Similarity=0.640 Sum_probs=281.0
Q ss_pred CCceeEeceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCC
Q 010616 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGS 149 (506)
Q Consensus 70 ~~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~ 149 (506)
+....++|.|+.+.+|+++|+||||||+|.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 356789999999999999999999999999999999999999999997 5689999999999999999999999999999
Q ss_pred CcEEEEEEEEEEEECcEEecccEEEEEEEeCCc--cccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEe
Q 010616 150 GSISGFFSQDNVEVGDVVVKDQVFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 227 (506)
Q Consensus 150 Gs~~G~~~~Dtv~~gg~~~~~~~Fg~~~~~~~~--~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L 227 (506)
|++.|.+++|+|++|+..++ ..|+++....+. .+.....|||||||++..+.....|++.+|++||+|++++||+||
T Consensus 204 GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L 282 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL 282 (453)
T ss_pred CCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEe
Confidence 99999999999999999988 568887765432 233456899999999988877788999999999999999999999
Q ss_pred cCCCCCCCCcEEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHH
Q 010616 228 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 307 (506)
Q Consensus 228 ~~~~~~~~~G~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~ 307 (506)
++.. ...|.|+|||+|+++|.|++.|+|+.+..+|.|.++ +.+++.. .....++|||||+++++|+++++++.
T Consensus 283 ~~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~ 355 (453)
T PTZ00147 283 PPED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFV 355 (453)
T ss_pred cCCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHH
Confidence 8753 237999999999999999999999998899999998 4777643 25678999999999999999999999
Q ss_pred HHhCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHH
Q 010616 308 HAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAV 387 (506)
Q Consensus 308 ~~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (506)
+++++..
T Consensus 356 ~~l~~~~------------------------------------------------------------------------- 362 (453)
T PTZ00147 356 ESLDVFK------------------------------------------------------------------------- 362 (453)
T ss_pred HHhCCee-------------------------------------------------------------------------
Confidence 9886531
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeee
Q 010616 388 VWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 467 (506)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~ 467 (506)
. ...+.|.++|+. ..+|+|+|.|+|..++|+|++|+.+........|+++|+
T Consensus 363 --------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~ 414 (453)
T PTZ00147 363 --------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNII 414 (453)
T ss_pred --------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEE
Confidence 0 113457889996 578999999999999999999998655444568999898
Q ss_pred eccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEecC
Q 010616 468 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 506 (506)
Q Consensus 468 ~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~~ 506 (506)
+.+. ..+.||||++|||++|+|||++++|||||+|+
T Consensus 415 ~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 415 PIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 7642 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=6.4e-58 Score=480.83 Aligned_cols=324 Identities=33% Similarity=0.646 Sum_probs=278.6
Q ss_pred CCceeEeceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCC
Q 010616 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGS 149 (506)
Q Consensus 70 ~~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~ 149 (506)
.....++|.|+.+.+|+++|+||||||+|.|++||||+++||+|..|. ...|..++.|+|++|+|++..++.+.+.|++
T Consensus 124 ~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~ 202 (450)
T PTZ00013 124 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGS 202 (450)
T ss_pred cCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECC
Confidence 366789999999999999999999999999999999999999999997 5689999999999999999999999999999
Q ss_pred CcEEEEEEEEEEEECcEEecccEEEEEEEeCC--ccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEe
Q 010616 150 GSISGFFSQDNVEVGDVVVKDQVFIEATREGS--LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 227 (506)
Q Consensus 150 Gs~~G~~~~Dtv~~gg~~~~~~~Fg~~~~~~~--~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L 227 (506)
|++.|.+++|+|++|+..++ ..|+++..... ..+....++||||||++..+.....|++.+|++||+|++++||+||
T Consensus 203 Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L 281 (450)
T PTZ00013 203 GTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 281 (450)
T ss_pred ceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEe
Confidence 99999999999999999987 57888765532 1234456899999999988777778999999999999999999999
Q ss_pred cCCCCCCCCcEEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHH
Q 010616 228 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 307 (506)
Q Consensus 228 ~~~~~~~~~G~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~ 307 (506)
++.+ ..+|+|+|||+|+++|.|++.|+|+....+|.|+++ +.+|.... ....++|||||+++++|+++++++.
T Consensus 282 ~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~ 354 (450)
T PTZ00013 282 PVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFF 354 (450)
T ss_pred cCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHH
Confidence 8652 237999999999999999999999998899999998 66664432 4567999999999999999999999
Q ss_pred HHhCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHH
Q 010616 308 HAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAV 387 (506)
Q Consensus 308 ~~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (506)
+++++..
T Consensus 355 ~~l~~~~------------------------------------------------------------------------- 361 (450)
T PTZ00013 355 ANLNVIK------------------------------------------------------------------------- 361 (450)
T ss_pred HHhCCee-------------------------------------------------------------------------
Confidence 8886541
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeee
Q 010616 388 VWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 467 (506)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~ 467 (506)
....+.|.++|+. ..+|+|+|.|+|.+++|+|++|+.+........|+++|.
T Consensus 362 ---------------------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~ 413 (450)
T PTZ00013 362 ---------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITML 413 (450)
T ss_pred ---------------------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEE
Confidence 0113457889985 578999999999999999999997644333468999987
Q ss_pred eccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEecC
Q 010616 468 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 506 (506)
Q Consensus 468 ~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~~ 506 (506)
+.+. .++.||||++|||++|+|||++++|||||+++
T Consensus 414 ~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 414 PVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 6542 23579999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.9e-55 Score=443.95 Aligned_cols=316 Identities=38% Similarity=0.714 Sum_probs=281.3
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcEEEEEEEEEEEE
Q 010616 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEV 163 (506)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G~~~~Dtv~~ 163 (506)
+|+++|+||||+|+++|++||||+++||++..|..+..|..+..|++..|+|++..++.+.+.|++|++.|.+++|+|.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999974446788899999999999999999999999999999999999999
Q ss_pred CcEEecccEEEEEEEeCCccccccceeeeeeccccccccCC-CCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEEC
Q 010616 164 GDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGD-AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 242 (506)
Q Consensus 164 gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~-~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fG 242 (506)
++..+.++.||++....+..+.....+||||||++..+... ..+++++|+++|+|++++||+||++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876655667788999999988776654 788999999999999999999999874 447999999
Q ss_pred CCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccchh
Q 010616 243 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKL 322 (506)
Q Consensus 243 giD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~~ 322 (506)
|+|+++|.|+++|+|+...++|.+.+++|.+++... ....+..++||||++++++|.++++.|++++++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 999999999999999999999999999999999932 24456779999999999999999999999997651
Q ss_pred hhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhHHH
Q 010616 323 VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEK 402 (506)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (506)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCCCCceEeC
Q 010616 403 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILG 482 (506)
Q Consensus 403 ~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG 482 (506)
..+.|.+||+....+|.|+|.|++.+|+|+|++|+.+..+.....|.+.|...+. ....+.||||
T Consensus 230 --------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~iLG 294 (317)
T PF00026_consen 230 --------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDWILG 294 (317)
T ss_dssp --------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEEEEE
T ss_pred --------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCceEec
Confidence 0167899999888899999999999999999999998877655689999998664 4455789999
Q ss_pred HHhhcceEEEEeCCCCeEEEEec
Q 010616 483 DVFMGVYHTVFDSGKLRIGFAEA 505 (506)
Q Consensus 483 ~~fl~~~y~vfD~~~~rIGfA~~ 505 (506)
.+|||++|++||++++|||||+|
T Consensus 295 ~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 295 SPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp HHHHTTEEEEEETTTTEEEEEEE
T ss_pred HHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=7e-52 Score=413.73 Aligned_cols=272 Identities=33% Similarity=0.557 Sum_probs=236.5
Q ss_pred EEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCcee-cCceEEEEeCCCc-EEEEEEEEEEE
Q 010616 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTE-IGKSCEINYGSGS-ISGFFSQDNVE 162 (506)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~-~~~~~~~~Y~~Gs-~~G~~~~Dtv~ 162 (506)
|+++|+||||||++.|++||||+++||++..|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 799999999999999999999999999999997 33455677899999999987 4789999999997 79999999999
Q ss_pred ECcEEecccEEEEEEEeCCccccccceeeeeeccccccccC---CCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEE
Q 010616 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI 239 (506)
Q Consensus 163 ~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~---~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L 239 (506)
+|+..++++.||+++..+...+.....+||||||++..+.. ...+++++|.+++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455677899999999876542 35679999999975 79999999863 27999
Q ss_pred EECCCCCCCcccceEEEeccc-ccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccc
Q 010616 240 VFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 318 (506)
Q Consensus 240 ~fGgiD~~~~~G~l~~~pl~~-~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~ 318 (506)
+|||+|+++|.|+++|+|+.. .++|.|++++|+++++... ...+..++|||||+++++|.++++++.+++++..
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~---- 228 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY---- 228 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc----
Confidence 999999999999999999986 7899999999999998442 3467889999999999999999999999884330
Q ss_pred cchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhh
Q 010616 319 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQ 398 (506)
Q Consensus 319 ~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (506)
+
T Consensus 229 ----------------------------------~--------------------------------------------- 229 (278)
T cd06097 229 ----------------------------------Y--------------------------------------------- 229 (278)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred hHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCCCCc
Q 010616 399 TKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 478 (506)
Q Consensus 399 ~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ 478 (506)
....+.|.+||+. .+|+|+|+| .
T Consensus 230 ----------------~~~~~~~~~~C~~--~~P~i~f~~---------------------------------------~ 252 (278)
T cd06097 230 ----------------DSEYGGWVFPCDT--TLPDLSFAV---------------------------------------F 252 (278)
T ss_pred ----------------cCCCCEEEEECCC--CCCCEEEEE---------------------------------------E
Confidence 1235678999995 399999999 4
Q ss_pred eEeCHHhhcceEEEEeCCCCeEEEEe
Q 010616 479 WILGDVFMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 479 ~ilG~~fl~~~y~vfD~~~~rIGfA~ 504 (506)
||||++|||++|+|||++++|||||+
T Consensus 253 ~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 253 SILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred EEEcchhhCceeEEEcCCCceeeecC
Confidence 89999999999999999999999996
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.4e-50 Score=419.51 Aligned_cols=316 Identities=28% Similarity=0.474 Sum_probs=246.8
Q ss_pred ceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcEEEEEEEEEEE
Q 010616 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVE 162 (506)
Q Consensus 83 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~G~~~~Dtv~ 162 (506)
..|+++|+||||+|+|.|+|||||+++||+|..|. ..++.|+|++|+||+..++.|+++|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 47999999999999999999999999999998763 3467999999999999999999999999999999999999
Q ss_pred ECcEEecccE----EEEEEEeCCccccccceeeeeecccccccc--CCCCchHHHHHHcCCCCCceEEEEecCCC-----
Q 010616 163 VGDVVVKDQV----FIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP----- 231 (506)
Q Consensus 163 ~gg~~~~~~~----Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~FSl~L~~~~----- 231 (506)
+++. .++. |+++....+..+.....+||||||++.++. ....+++++|++|+.+ +++||+||....
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344443332212223679999999988764 2457899999999987 579999985321
Q ss_pred --CCCCCcEEEECCCCCCCcccceEEEecccccceEEEEceEEECCeeeeeecC---CceEEEcCCCCCeeeCHHHHHHH
Q 010616 232 --DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG---GCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 232 --~~~~~G~L~fGgiD~~~~~G~l~~~pl~~~~~w~v~l~~i~v~g~~~~~~~~---~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
+...+|.|+|||+|+++|.|++.|+|+....+|.|.+++|+|+++.+..... ...++|||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1234799999999999999999999999889999999999999988754221 24699999999999999999999
Q ss_pred HHHhCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhH
Q 010616 307 NHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMA 386 (506)
Q Consensus 307 ~~~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (506)
.++++++... +
T Consensus 234 ~~~l~~~~~~------------------------~--------------------------------------------- 244 (364)
T cd05473 234 VDAIKAASLI------------------------E--------------------------------------------- 244 (364)
T ss_pred HHHHHhhccc------------------------c---------------------------------------------
Confidence 9998764100 0
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhhccCCCCC-CCceEecCCCCC-----CCCcEEEEECC------EEEEECcccceeee
Q 010616 387 VVWVQNQLKQKQTKEKVLSYINELCDSLPNP-MGESIIDCDRIP-----TMPNVSFTIGD------KIFNLSPEQYILKT 454 (506)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~l~f~~gg------~~~~l~~~~yi~~~ 454 (506)
..+.. .+.+.++|.... .+|+|+|+|+| .++.|+|++|+...
T Consensus 245 --------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~ 298 (364)
T cd05473 245 --------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPV 298 (364)
T ss_pred --------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhh
Confidence 00000 122346786543 58999999964 47899999999864
Q ss_pred cc-CccceeEeeeeeccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEecC
Q 010616 455 GE-GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 506 (506)
Q Consensus 455 ~~-~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~~ 506 (506)
.. .....|+. +... +..+.||||+.|||++|+|||++++|||||+++
T Consensus 299 ~~~~~~~~C~~-~~~~----~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 299 EDHGTQLDCYK-FAIS----QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred ccCCCcceeeE-Eeee----cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 32 22457985 2111 123469999999999999999999999999874
No 15
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-50 Score=420.87 Aligned_cols=320 Identities=40% Similarity=0.760 Sum_probs=265.2
Q ss_pred eeEeceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCccccc-CCC-cCCCCCCCceecCce--------
Q 010616 73 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYF-HSR-YKSRKSNTYTEIGKS-------- 142 (506)
Q Consensus 73 ~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~-~~~-f~~~~SsT~~~~~~~-------- 142 (506)
...++..+.+.+|+++|+||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3455666778899999999999999999999999999999999962 6874 455 999999999987743
Q ss_pred ----------EEEEeCCC-cEEEEEEEEEEEECc---EEecccEEEEEEEeCCccccc-cceeeeeeccccccccCCCCc
Q 010616 143 ----------CEINYGSG-SISGFFSQDNVEVGD---VVVKDQVFIEATREGSLTFLL-ARFDGIIGLGFREIAVGDAVP 207 (506)
Q Consensus 143 ----------~~~~Y~~G-s~~G~~~~Dtv~~gg---~~~~~~~Fg~~~~~~~~~~~~-~~~dGIlGLg~~~~s~~~~~~ 207 (506)
|.+.|++| +++|++++|+|++++ ...+++.|||+....+. +.. .+.+||||||+..++...+.+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 99999995 489999999999998 77888999999988765 444 678999999999988655443
Q ss_pred hHHHHHHcCCCCCceEEEEecCCCCC-CCCcEEEECCCCCCCcccceEEEeccccc--ceEEEEceEEECCee----eee
Q 010616 208 VWDNMVEQGLVSEEVFSFWLNRDPDA-EEGGEIVFGGVDPKHFKGKHTYVPVTKKG--YWQFELGDILIGNQS----TGV 280 (506)
Q Consensus 208 ~~~~L~~qg~i~~~~FSl~L~~~~~~-~~~G~L~fGgiD~~~~~G~l~~~pl~~~~--~w~v~l~~i~v~g~~----~~~ 280 (506)
.+.++ .++||+||.+.... ..+|.|+||++|+.++.+++.|+|+.... +|.+.+.+|+|+++. ..+
T Consensus 192 ~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 33222 23899999987433 25899999999999999999999998877 999999999999843 223
Q ss_pred ecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCcccee
Q 010616 281 CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVS 360 (506)
Q Consensus 281 ~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 360 (506)
+.+...+++||||+++++|+++|++|.++++++-
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 4446889999999999999999999999997650
Q ss_pred cceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCC----CCcEEE
Q 010616 361 TGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT----MPNVSF 436 (506)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~----~P~l~f 436 (506)
+.....+.+.++|..+.. +|.|+|
T Consensus 299 ----------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i~~ 326 (398)
T KOG1339|consen 299 ----------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLPDITF 326 (398)
T ss_pred ----------------------------------------------------eccccCCceeeecccCCCCcccCCcEEE
Confidence 001235667788887776 999999
Q ss_pred EEC-CEEEEECcccceeeeccCccceeEeeeeeccCCCCCCCceEeCHHhhcceEEEEeCC-CCeEEEEec
Q 010616 437 TIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG-KLRIGFAEA 505 (506)
Q Consensus 437 ~~g-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~-~~rIGfA~~ 505 (506)
+|+ |+.|.+++++|+++..+.... |.+.+...+.. +.||||+.|+|+++++||.. ++|||||++
T Consensus 327 ~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 327 HFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred EECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 998 899999999999987765322 99988765422 68999999999999999999 999999985
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.5e-49 Score=416.95 Aligned_cols=304 Identities=23% Similarity=0.427 Sum_probs=236.7
Q ss_pred CCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccc--cCCCcCCCCCCCceecC------------------
Q 010616 81 MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCY--FHSRYKSRKSNTYTEIG------------------ 140 (506)
Q Consensus 81 ~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~f~~~~SsT~~~~~------------------ 140 (506)
.+.+|+++|+||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4679999999999999999999999999999999997 676 45799999999998743
Q ss_pred --ceEEEEeCCCc-EEEEEEEEEEEECc-----EEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHH
Q 010616 141 --KSCEINYGSGS-ISGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNM 212 (506)
Q Consensus 141 --~~~~~~Y~~Gs-~~G~~~~Dtv~~gg-----~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L 212 (506)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999987 46889999999876542 32 257999999998765 55666
Q ss_pred HHcCCCCCceEEEEecCCC-CCCCCcEEEECCCCCCCccc-ceEEEeccc---ccceEEEEceEEECCeeeeeec-----
Q 010616 213 VEQGLVSEEVFSFWLNRDP-DAEEGGEIVFGGVDPKHFKG-KHTYVPVTK---KGYWQFELGDILIGNQSTGVCE----- 282 (506)
Q Consensus 213 ~~qg~i~~~~FSl~L~~~~-~~~~~G~L~fGgiD~~~~~G-~l~~~pl~~---~~~w~v~l~~i~v~g~~~~~~~----- 282 (506)
..+ +. ++||+||.+.. +....|.|+||+. .++.| .+.|+|+.. ..+|.|.+++|+||++.+.+..
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 44 59999997532 2234799999984 45554 489999964 4689999999999998876432
Q ss_pred -CCceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceec
Q 010616 283 -GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVST 361 (506)
Q Consensus 283 -~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 361 (506)
+...+||||||+++++|+++|+++.+++.+. + ... + .
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~----------~------------~~~-~-----------~-------- 342 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEA----------I------------GGE-R-----------V-------- 342 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHH----------h------------ccc-c-----------C--------
Confidence 2347999999999999999999998877432 0 000 0 0
Q ss_pred ceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCC---CCCCcEEEEE
Q 010616 362 GIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI---PTMPNVSFTI 438 (506)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~---~~~P~l~f~~ 438 (506)
....+ ...+|... ..+|.|+|+|
T Consensus 343 -----------------------------------------------------~~~~~-~~~~C~~~~~~~~~P~i~~~F 368 (431)
T PLN03146 343 -----------------------------------------------------SDPQG-LLSLCYSSTSDIKLPIITAHF 368 (431)
T ss_pred -----------------------------------------------------CCCCC-CCCccccCCCCCCCCeEEEEE
Confidence 00000 11234321 3689999999
Q ss_pred CCEEEEECcccceeeeccCccceeEeeeeeccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEec
Q 010616 439 GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 505 (506)
Q Consensus 439 gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~ 505 (506)
+|+++.|+|++|+++..++ ..|+. +... .+.||||+.|||++|++||++++|||||++
T Consensus 369 ~Ga~~~l~~~~~~~~~~~~--~~Cl~-~~~~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 369 TGADVKLQPLNTFVKVSED--LVCFA-MIPT------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred CCCeeecCcceeEEEcCCC--cEEEE-EecC------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999999999999976543 57985 3321 236999999999999999999999999986
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.9e-49 Score=404.91 Aligned_cols=282 Identities=30% Similarity=0.465 Sum_probs=235.6
Q ss_pred ceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccc--cCCCcCCCCCCCceec----------------CceEE
Q 010616 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCY--FHSRYKSRKSNTYTEI----------------GKSCE 144 (506)
Q Consensus 83 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~f~~~~SsT~~~~----------------~~~~~ 144 (506)
+.|+++|+||||||++.|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 57999999999999999999999999999999997 565 4578999999999863 56999
Q ss_pred EEeCCCc-EEEEEEEEEEEECcEEec-------ccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcC
Q 010616 145 INYGSGS-ISGFFSQDNVEVGDVVVK-------DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQG 216 (506)
Q Consensus 145 ~~Y~~Gs-~~G~~~~Dtv~~gg~~~~-------~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg 216 (506)
+.|++|+ +.|.+++|+|+|++..+. ++.|||+....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 789999999999986553 467999887655 34456789999999987542 233455577887
Q ss_pred CCCC--ceEEEEecCCCCCCCCcEEEECCCCCCCcc----------cceEEEecccccceEEEEceEEECCeee-eeecC
Q 010616 217 LVSE--EVFSFWLNRDPDAEEGGEIVFGGVDPKHFK----------GKHTYVPVTKKGYWQFELGDILIGNQST-GVCEG 283 (506)
Q Consensus 217 ~i~~--~~FSl~L~~~~~~~~~G~L~fGgiD~~~~~----------G~l~~~pl~~~~~w~v~l~~i~v~g~~~-~~~~~ 283 (506)
.+.. ++||+||++. .|.|+|||+|++++. +++.|+|+....+|.|.+++|+++++.. .....
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7665 9999999864 799999999999987 8899999998899999999999998861 12346
Q ss_pred CceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecce
Q 010616 284 GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 363 (506)
Q Consensus 284 ~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 363 (506)
+..++|||||+++++|+++++++.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~------------------------------------------------------ 256 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNF------------------------------------------------------ 256 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhh------------------------------------------------------
Confidence 77899999999999999998887441
Q ss_pred eeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEEC-CEE
Q 010616 364 KTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKI 442 (506)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~g-g~~ 442 (506)
+|+|+|.|+ |++
T Consensus 257 -------------------------------------------------------------------~P~i~~~f~~g~~ 269 (326)
T cd06096 257 -------------------------------------------------------------------FPTITIIFENNLK 269 (326)
T ss_pred -------------------------------------------------------------------cCcEEEEEcCCcE
Confidence 289999997 899
Q ss_pred EEECcccceeeeccCccceeEeeeeeccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEec
Q 010616 443 FNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 505 (506)
Q Consensus 443 ~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~ 505 (506)
++++|++|+++.... .|..++... .+.||||++|||++|+|||++++|||||++
T Consensus 270 ~~i~p~~y~~~~~~~---~c~~~~~~~------~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 270 IDWKPSSYLYKKESF---WCKGGEKSV------SNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred EEECHHHhccccCCc---eEEEEEecC------CCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 999999999875433 476665432 247999999999999999999999999986
No 18
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=6.9e-49 Score=395.01 Aligned_cols=278 Identities=29% Similarity=0.515 Sum_probs=240.4
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCC-cEEEEEEEEEEE
Q 010616 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG-SISGFFSQDNVE 162 (506)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~G-s~~G~~~~Dtv~ 162 (506)
.|+++|+||||+|++.|++||||+++||+ .|.+.|++| .+.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 688999995 589999999999
Q ss_pred ECcEEecccEEEEEEEeCCccccccceeeeeecccccccc-----CCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCc
Q 010616 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAV-----GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGG 237 (506)
Q Consensus 163 ~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~-----~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G 237 (506)
+++..++++.|||+.... ..+||||||+...+. ....+++++|.+||+|++++||+||++.+ ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 358999999988743 34457999999999999999999998753 2379
Q ss_pred EEEECCCCCCCcccceEEEecccc------cceEEEEceEEECCeeee--eecCCceEEEcCCCCCeeeCHHHHHHHHHH
Q 010616 238 EIVFGGVDPKHFKGKHTYVPVTKK------GYWQFELGDILIGNQSTG--VCEGGCAAIVDSGTSLLAGPTPVVTEINHA 309 (506)
Q Consensus 238 ~L~fGgiD~~~~~G~l~~~pl~~~------~~w~v~l~~i~v~g~~~~--~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~ 309 (506)
.|+|||+|+++|.|++.|+|+... .+|.|.+++|++++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHH
Q 010616 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVW 389 (506)
Q Consensus 310 ~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (506)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 87651
Q ss_pred HHHHhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeecc--CccceeEeeee
Q 010616 390 VQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE--GIAEVCISGFM 467 (506)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~--~~~~~C~~~~~ 467 (506)
....+.|.++|+.... |+|+|+|+|.+|+|++++|+++... .....|++.|+
T Consensus 209 -------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~ 262 (295)
T cd05474 209 -------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQ 262 (295)
T ss_pred -------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEEE
Confidence 0113568899998766 9999999999999999999987642 33568998888
Q ss_pred eccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEec
Q 010616 468 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 505 (506)
Q Consensus 468 ~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~ 505 (506)
..+ . +.||||++|||++|++||.+++|||||+|
T Consensus 263 ~~~----~-~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 263 PST----S-DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred eCC----C-CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 653 1 57999999999999999999999999986
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.1e-48 Score=392.65 Aligned_cols=287 Identities=25% Similarity=0.451 Sum_probs=223.6
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCc-EEEEEEEEEEE
Q 010616 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDNVE 162 (506)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs-~~G~~~~Dtv~ 162 (506)
+|+++|.||||||++.|++||||+++||+|..| |.|.++|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976543 67999999998 58999999999
Q ss_pred ECcE-EecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEE
Q 010616 163 VGDV-VVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVF 241 (506)
Q Consensus 163 ~gg~-~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~f 241 (506)
|++. .++++.|||+...++. + ...+||||||+...+ +..++..+ .+++||+||++.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987665 44555544 3589999998753 234899999
Q ss_pred CCCCCCCcccceEEEecccc----cceEEEEceEEECCeeeeee---cCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCc
Q 010616 242 GGVDPKHFKGKHTYVPVTKK----GYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEG 314 (506)
Q Consensus 242 GgiD~~~~~G~l~~~pl~~~----~~w~v~l~~i~v~g~~~~~~---~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~ 314 (506)
||+|++ .|++.|+|+..+ .+|.|++++|+|+++.+... ..+..++|||||+++++|++++++|.++++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 899999999753 68999999999999987542 245679999999999999999999999886430
Q ss_pred cccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHh
Q 010616 315 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQL 394 (506)
Q Consensus 315 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (506)
. .+ +... +
T Consensus 202 ~----------~~------------~~~~-----~--------------------------------------------- 209 (299)
T cd05472 202 A----------AY------------PRAP-----G--------------------------------------------- 209 (299)
T ss_pred c----------cC------------CCCC-----C---------------------------------------------
Confidence 0 00 0000 0
Q ss_pred hhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEEC-CEEEEECcccceeeeccCccceeEeeeeeccCCC
Q 010616 395 KQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPP 473 (506)
Q Consensus 395 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~g-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~ 473 (506)
...-+.|+. ++|.....+|+|+|+|+ |+++.|+|++|++... .....|+. +...+
T Consensus 210 ----------~~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~-~~~~~--- 265 (299)
T cd05472 210 ----------FSILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLA-FAGTS--- 265 (299)
T ss_pred ----------CCCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEE-EeCCC---
Confidence 000001222 12333457999999996 8999999999998432 23368974 54322
Q ss_pred CCCCceEeCHHhhcceEEEEeCCCCeEEEEec
Q 010616 474 PRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 505 (506)
Q Consensus 474 ~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~ 505 (506)
..++.||||+.|||++|+|||++++|||||++
T Consensus 266 ~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 266 DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 23457999999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.4e-46 Score=369.49 Aligned_cols=279 Identities=49% Similarity=0.865 Sum_probs=242.8
Q ss_pred EEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCC--cCCCCCCCceecCceEEEEeCCCcEEEEEEEEEEE
Q 010616 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSR--YKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVE 162 (506)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~--f~~~~SsT~~~~~~~~~~~Y~~Gs~~G~~~~Dtv~ 162 (506)
|+++|.||||+|++.|++||||+++||+|..|. ...|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999997 223333333 88999999999999999999999999999999999
Q ss_pred ECcEEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEEC
Q 010616 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 242 (506)
Q Consensus 163 ~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fG 242 (506)
+++..++++.|||+..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+..+....|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998765 344567899999999987766678899999999999999999999985322348999999
Q ss_pred CCCCCCcccceEEEeccc--ccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccc
Q 010616 243 GVDPKHFKGKHTYVPVTK--KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC 320 (506)
Q Consensus 243 giD~~~~~G~l~~~pl~~--~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c 320 (506)
|+|++++.+++.|+|+.. ..+|.+.+++|.+++...........++||||++++++|.+++++|.+++.+...
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~----- 233 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS----- 233 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc-----
Confidence 999999999999999987 7899999999999997422245678899999999999999999999999976510
Q ss_pred hhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhH
Q 010616 321 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK 400 (506)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (506)
T Consensus 234 -------------------------------------------------------------------------------- 233 (283)
T cd05471 234 -------------------------------------------------------------------------------- 233 (283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCCCCceE
Q 010616 401 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 480 (506)
Q Consensus 401 ~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~i 480 (506)
.....+..+|.....+|.|+|+| .||
T Consensus 234 ---------------~~~~~~~~~~~~~~~~p~i~f~f---------------------------------------~~i 259 (283)
T cd05471 234 ---------------SSDGGYGVDCSPCDTLPDITFTF---------------------------------------LWI 259 (283)
T ss_pred ---------------ccCCcEEEeCcccCcCCCEEEEE---------------------------------------EEE
Confidence 01234567888888999999999 479
Q ss_pred eCHHhhcceEEEEeCCCCeEEEEe
Q 010616 481 LGDVFMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 481 lG~~fl~~~y~vfD~~~~rIGfA~ 504 (506)
||++|||++|++||.+++|||||+
T Consensus 260 lG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 260 LGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ccHhhhhheEEEEeCCCCEEeecC
Confidence 999999999999999999999985
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2e-45 Score=364.65 Aligned_cols=248 Identities=29% Similarity=0.534 Sum_probs=210.9
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCc-EEEEEEEEEEE
Q 010616 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDNVE 162 (506)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs-~~G~~~~Dtv~ 162 (506)
+|+++|+||||||++.|++||||+++||+| |.+.++|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999975 45889999775 79999999999
Q ss_pred ECcE--EecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEE
Q 010616 163 VGDV--VVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIV 240 (506)
Q Consensus 163 ~gg~--~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~ 240 (506)
+++. .++++.|||+....+ +.....+||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999998765 456678999999987654 667787776 89999998753334589999
Q ss_pred ECCCCCCCcccceEEEeccc----ccceEEEEceEEECCeeeee--------ecCCceEEEcCCCCCeeeCHHHHHHHHH
Q 010616 241 FGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGV--------CEGGCAAIVDSGTSLLAGPTPVVTEINH 308 (506)
Q Consensus 241 fGgiD~~~~~G~l~~~pl~~----~~~w~v~l~~i~v~g~~~~~--------~~~~~~~ivDtgt~~~~lp~~~~~~i~~ 308 (506)
|||+|++ +.|++.|+|+.. .++|.+.+++|+++++.+.+ ......++|||||+++++|+++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~------ 194 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA------ 194 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc------
Confidence 9999999 999999999976 57999999999999987642 3456789999999999999631
Q ss_pred HhCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHH
Q 010616 309 AIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVV 388 (506)
Q Consensus 309 ~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (506)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEEC-CEEEEECcccceeeeccCccceeEeeee
Q 010616 389 WVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFM 467 (506)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~g-g~~~~l~~~~yi~~~~~~~~~~C~~~~~ 467 (506)
+|.|+|+|+ |+++.+++++|+++.. ....|+. +.
T Consensus 195 ------------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~-~~ 229 (265)
T cd05476 195 ------------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA-IL 229 (265)
T ss_pred ------------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE-Ee
Confidence 178999997 8999999999998543 3368975 43
Q ss_pred eccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEecC
Q 010616 468 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 506 (506)
Q Consensus 468 ~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~~ 506 (506)
.. +..+.||||++|||++|++||.+++|||||++.
T Consensus 230 ~~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 230 SS----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred cC----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 22 245689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.2e-45 Score=365.87 Aligned_cols=258 Identities=25% Similarity=0.451 Sum_probs=213.7
Q ss_pred ceEEEEEEecCCCceEEEEecCCCCceEEeCC-CCCCCcccccCCCcCCCCCCCceecCceEEEEeCCC-cEEEEEEEEE
Q 010616 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSS-KCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG-SISGFFSQDN 160 (506)
Q Consensus 83 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~-~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~G-s~~G~~~~Dt 160 (506)
++|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.++|++| .+.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999984 565 45 46799999965 5899999999
Q ss_pred EEECc----EEecccEEEEEEEeCCcc-ccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCC
Q 010616 161 VEVGD----VVVKDQVFIEATREGSLT-FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235 (506)
Q Consensus 161 v~~gg----~~~~~~~Fg~~~~~~~~~-~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~ 235 (506)
|+++. ..++++.|||+....+.. +.....+||||||+...+ ++++|.++++| +++||+||.+..
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~---- 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG---- 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----
Confidence 99953 577899999997665422 234578999999997654 78999999999 899999998732
Q ss_pred CcEEEECCCCCCCcccceEEEecccc---cceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHHHHHhCC
Q 010616 236 GGEIVFGGVDPKHFKGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 312 (506)
Q Consensus 236 ~G~L~fGgiD~~~~~G~l~~~pl~~~---~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i~~~~~~ 312 (506)
+|.|+|| |..++.|++.|+|+.++ .+|.|++.+|+||++... ..+..++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCccc---------
Confidence 6899998 55677899999999764 799999999999998543 4567899999999999997421
Q ss_pred CccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHH
Q 010616 313 EGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQN 392 (506)
Q Consensus 313 ~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (506)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECC----EEEEECcccceeeeccCccceeEeeeee
Q 010616 393 QLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD----KIFNLSPEQYILKTGEGIAEVCISGFMA 468 (506)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg----~~~~l~~~~yi~~~~~~~~~~C~~~~~~ 468 (506)
+|+|+|+|++ ++++|+|++|++....+ ..|+..+..
T Consensus 197 --------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~--~~Cl~~~~~ 236 (273)
T cd05475 197 --------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKG--NVCLGILNG 236 (273)
T ss_pred --------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCC--CEEEEEecC
Confidence 4789999976 79999999999874433 579877654
Q ss_pred ccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEecC
Q 010616 469 FDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 506 (506)
Q Consensus 469 ~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~~ 506 (506)
.+. ..++.||||+.|||++|++||++++|||||++.
T Consensus 237 ~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 237 SEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred CCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 321 234589999999999999999999999999874
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.8e-41 Score=349.91 Aligned_cols=314 Identities=17% Similarity=0.238 Sum_probs=231.4
Q ss_pred ecCCCce-EEEEecCCCCceEEeCCCCCC---------CcccccCCCcCCCC------CCCceecCceEEEE-eCCCc-E
Q 010616 91 IGSPPQN-FSVIFDTGSSNLWVPSSKCYF---------SISCYFHSRYKSRK------SNTYTEIGKSCEIN-YGSGS-I 152 (506)
Q Consensus 91 IGtPpQ~-~~v~lDTGSs~~WV~~~~C~~---------~~~C~~~~~f~~~~------SsT~~~~~~~~~~~-Y~~Gs-~ 152 (506)
+|||-.+ +.|++||||+++||+|.+|.. +..|..+..|++.. ++......|.|... |++|+ .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 5788777 899999999999997764431 56777666676542 22233344767554 77885 6
Q ss_pred EEEEEEEEEEECc--------EEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcCCCCCceEE
Q 010616 153 SGFFSQDNVEVGD--------VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFS 224 (506)
Q Consensus 153 ~G~~~~Dtv~~gg--------~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS 224 (506)
.|++++|+|+|+. ..++++.|||+.......+ ....+||||||+..++ +..+|..++. .+++||
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS 153 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFA 153 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceE
Confidence 8999999999963 3688999999976532222 3348999999999887 4567776655 569999
Q ss_pred EEecCCCCCCCCcEEEECCCCCCCcc------cceEEEecccc----cceEEEEceEEECCeeeeee--------cCCce
Q 010616 225 FWLNRDPDAEEGGEIVFGGVDPKHFK------GKHTYVPVTKK----GYWQFELGDILIGNQSTGVC--------EGGCA 286 (506)
Q Consensus 225 l~L~~~~~~~~~G~L~fGgiD~~~~~------G~l~~~pl~~~----~~w~v~l~~i~v~g~~~~~~--------~~~~~ 286 (506)
+||.+.. ..+|.|+||+.++.++. +++.|+|+..+ .+|.|++++|+||++.+.++ .+...
T Consensus 154 ~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g 231 (362)
T cd05489 154 LCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGG 231 (362)
T ss_pred EEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCc
Confidence 9998753 23899999999988775 78999999754 79999999999999987542 23467
Q ss_pred EEEcCCCCCeeeCHHHHHHHHHHhCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeee
Q 010616 287 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV 366 (506)
Q Consensus 287 ~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 366 (506)
++|||||++++||+++|++|.+++.++ +..+.. .++.
T Consensus 232 ~iiDSGTs~t~lp~~~y~~l~~a~~~~----------~~~~~~---------~~~~------------------------ 268 (362)
T cd05489 232 VKLSTVVPYTVLRSDIYRAFTQAFAKA----------TARIPR---------VPAA------------------------ 268 (362)
T ss_pred EEEecCCceEEECHHHHHHHHHHHHHH----------hcccCc---------CCCC------------------------
Confidence 999999999999999999999988543 000000 0000
Q ss_pred eecccccCCCcccchhhhhHHHHHHHHhhhhhhHHHHHHhhhhhccCCCCCCCceEecCCCCCCCCcEEEEECC--EEEE
Q 010616 367 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD--KIFN 444 (506)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~gg--~~~~ 444 (506)
....++|+.... ...|+....+|+|+|+|+| ++++
T Consensus 269 --------------------------------------~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~~~~ 305 (362)
T cd05489 269 --------------------------------------AVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGVNWT 305 (362)
T ss_pred --------------------------------------CCCcCccccCCC-----cCCcccccccceEEEEEeCCCeEEE
Confidence 000134554321 1234435689999999964 9999
Q ss_pred ECcccceeeeccCccceeEeeeeeccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEEec
Q 010616 445 LSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 505 (506)
Q Consensus 445 l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA~~ 505 (506)
|+|++|+++..++ ..|+ +|...+.. .++.||||+.|||++|++||++++|||||++
T Consensus 306 l~~~ny~~~~~~~--~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 306 IFGANSMVQVKGG--VACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EcCCceEEEcCCC--cEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999986543 6896 57654321 2468999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=4.3e-22 Score=170.36 Aligned_cols=108 Identities=55% Similarity=0.882 Sum_probs=96.0
Q ss_pred EEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCc-CCCCCCCceecCceEEEEeCCCcEEEEEEEEEEEECc
Q 010616 87 GEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRY-KSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEVGD 165 (506)
Q Consensus 87 ~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f-~~~~SsT~~~~~~~~~~~Y~~Gs~~G~~~~Dtv~~gg 165 (506)
++|.||||||++.|+|||||+++||+|..|. ...|..+..| ++..|++++...+.|.+.|++|++.|.++.|+|++++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 3344455667 9999999999999999999999999999999999999
Q ss_pred EEecccEEEEEEEeCCccccccceeeeeec
Q 010616 166 VVVKDQVFIEATREGSLTFLLARFDGIIGL 195 (506)
Q Consensus 166 ~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGL 195 (506)
..++++.|||+....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887654555678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=6.5e-21 Score=175.38 Aligned_cols=136 Identities=34% Similarity=0.591 Sum_probs=106.5
Q ss_pred EEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecC----------------------ce
Q 010616 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIG----------------------KS 142 (506)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~----------------------~~ 142 (506)
|+++|.||||+|++.+++||||+.+|++| ..+.|+|.+|+||+... |.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 24678888888887632 68
Q ss_pred EEEEeCCCc-EEEEEEEEEEEECc-----EEecccEEEEEEEeCCccccccceeeeeeccccccccCCCCchHHHHHHcC
Q 010616 143 CEINYGSGS-ISGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQG 216 (506)
Q Consensus 143 ~~~~Y~~Gs-~~G~~~~Dtv~~gg-----~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg 216 (506)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 68999999999975 46788999999887753 2388999999998877 88889888
Q ss_pred CCCCceEEEEecCCCCCCCCcEEEECC
Q 010616 217 LVSEEVFSFWLNRDPDAEEGGEIVFGG 243 (506)
Q Consensus 217 ~i~~~~FSl~L~~~~~~~~~G~L~fGg 243 (506)
..+.||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.76 E-value=6e-18 Score=155.27 Aligned_cols=153 Identities=23% Similarity=0.397 Sum_probs=103.4
Q ss_pred ceEEEEceEEECCeeeeeecC-------CceEEEcCCCCCeeeCHHHHHHHHHHhCCCccccccchhhhhhcchhhHHHH
Q 010616 263 YWQFELGDILIGNQSTGVCEG-------GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLL 335 (506)
Q Consensus 263 ~w~v~l~~i~v~g~~~~~~~~-------~~~~ivDtgt~~~~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~y~~~~~~~~ 335 (506)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|+.+.+++.+. +...+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------~~~~~------- 63 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------MGAPG------- 63 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------HHTCT-------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------hhhcc-------
Confidence 588999999999999886543 467999999999999999999999988543 00000
Q ss_pred hhCCCCccccccccccccCCccceecceeeeeecccccCCCcccchhhhhHHHHHHHHhhhhhhHHHHHHhhhhhccCCC
Q 010616 336 VSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 415 (506)
Q Consensus 336 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 415 (506)
+. +. .......++|++.+
T Consensus 64 ---~~------------------------~~-----------------------------------~~~~~~~~~Cy~~~ 81 (161)
T PF14541_consen 64 ---VS------------------------RE-----------------------------------APPFSGFDLCYNLS 81 (161)
T ss_dssp -----------------------------CE-----------------------------------E---TT-S-EEEGG
T ss_pred ---cc------------------------cc-----------------------------------cccCCCCCceeecc
Confidence 00 00 00011234677666
Q ss_pred CCCCceEecCCCCCCCCcEEEEEC-CEEEEECcccceeeeccCccceeEeeeeeccCCCCCCCceEeCHHhhcceEEEEe
Q 010616 416 NPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 494 (506)
Q Consensus 416 ~~~~~~~~~C~~~~~~P~l~f~~g-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD 494 (506)
.... + .....+|+|+|+|. |.+++|++++|+++..++ ..|+. |... .....+..|||..+|++++++||
T Consensus 82 ~~~~----~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla-~~~~--~~~~~~~~viG~~~~~~~~v~fD 151 (161)
T PF14541_consen 82 SFGV----N-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLA-FVPS--DADDDGVSVIGNFQQQNYHVVFD 151 (161)
T ss_dssp CS-E----E-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEES-EEEE--TSTTSSSEEE-HHHCCTEEEEEE
T ss_pred cccc----c-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEE-EEcc--CCCCCCcEEECHHHhcCcEEEEE
Confidence 5210 0 11147999999995 899999999999987644 78996 4433 12344679999999999999999
Q ss_pred CCCCeEEEEe
Q 010616 495 SGKLRIGFAE 504 (506)
Q Consensus 495 ~~~~rIGfA~ 504 (506)
++++||||+|
T Consensus 152 l~~~~igF~~ 161 (161)
T PF14541_consen 152 LENGRIGFAP 161 (161)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEeC
Confidence 9999999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.96 E-value=2.4e-05 Score=64.38 Aligned_cols=92 Identities=15% Similarity=0.334 Sum_probs=64.9
Q ss_pred eEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcE-EEEEEEEEEE
Q 010616 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSI-SGFFSQDNVE 162 (506)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~-~G~~~~Dtv~ 162 (506)
.|++++.|+ ++++++++|||++.+|+...... .+. . . ........+...+|.. ......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~-------~-~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L-------P-LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C-------C-ccCCCcEEEEecCCCccceEEEcceEE
Confidence 589999999 49999999999999999764321 111 0 0 1122345566777773 4555688999
Q ss_pred ECcEEecccEEEEEEEeCCccccccceeeeeeccc
Q 010616 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (506)
Q Consensus 163 ~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 197 (506)
+|+..++++.+........ ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999998877654321 4699999864
No 28
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.79 E-value=2.3e-05 Score=53.76 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=35.9
Q ss_pred ccchhhhhHHHHHHHHhhhhhhHHHHHHhhhhhccCCC
Q 010616 378 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 415 (506)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 415 (506)
..|.+|+.+++++++.|+++.|+++|.+.+++.|..+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 36999999999999999999999999999999999876
No 29
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=97.69 E-value=1e-05 Score=54.25 Aligned_cols=34 Identities=50% Similarity=0.932 Sum_probs=32.6
Q ss_pred ccchhhhhhcchhhHHHHhhCCCCcccccccccc
Q 010616 318 AECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 351 (506)
Q Consensus 318 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 351 (506)
..|+.+|++|+..|+++|.+.++|++||+.+++|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 4699999999999999999999999999999998
No 30
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.22 E-value=0.0022 Score=55.82 Aligned_cols=101 Identities=18% Similarity=0.354 Sum_probs=67.2
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcE-E
Q 010616 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSI-S 153 (506)
Q Consensus 75 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~-~ 153 (506)
+++.-..++.|++++.|.. +++.+++|||++.+-++...-. .-..++.. ......+.=..|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 4566667899999999986 7999999999999988543211 00111111 12233344455664 3
Q ss_pred EEEEEEEEEECcEEecccEEEEEEEeCCccccccceeeeeeccc
Q 010616 154 GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (506)
Q Consensus 154 G~~~~Dtv~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 197 (506)
....-|.+.+|+..+.|..+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 556889999999999999977663211 1279999974
No 31
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.55 E-value=0.016 Score=46.71 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=53.6
Q ss_pred EEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcE-EEEEEEEEEEECcE
Q 010616 88 EIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSI-SGFFSQDNVEVGDV 166 (506)
Q Consensus 88 ~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~-~G~~~~Dtv~~gg~ 166 (506)
++.|+. +++++++|||++.+.+....+. ....... .......+.-.+|.. ......+.+++|+.
T Consensus 2 ~v~vng--~~~~~liDTGa~~~~i~~~~~~-------~l~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~i~ig~~ 66 (90)
T PF13650_consen 2 PVKVNG--KPVRFLIDTGASISVISRSLAK-------KLGLKPR------PKSVPISVSGAGGSVTVYRGRVDSITIGGI 66 (90)
T ss_pred EEEECC--EEEEEEEcCCCCcEEECHHHHH-------HcCCCCc------CCceeEEEEeCCCCEEEEEEEEEEEEECCE
Confidence 567775 8999999999998888543321 0011111 111123333344543 45566668999999
Q ss_pred EecccEEEEEEEeCCccccccceeeeeecc
Q 010616 167 VVKDQVFIEATREGSLTFLLARFDGIIGLG 196 (506)
Q Consensus 167 ~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg 196 (506)
.+.+..|-+.. .....+||||+-
T Consensus 67 ~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 67 TLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 98888876654 134568999974
No 32
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=96.18 E-value=0.0051 Score=58.62 Aligned_cols=87 Identities=33% Similarity=0.553 Sum_probs=67.8
Q ss_pred cchhhhhhcchhhHHHHhhCCCCccccccccccccCCccceecceeeeee-cccccCCCcccchhhhhHHHHHHHHhhh-
Q 010616 319 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVE-KENVSAGDSAVCSACEMAVVWVQNQLKQ- 396 (506)
Q Consensus 319 ~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 396 (506)
+|+.++++|.+.|++.|.++..|+.||....+|+-.. .+ ..+ ..+ ..-...|.+|..+++++.--|..
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~-------~~-~~~~~~~--~~~~~~C~~C~~~V~~~~~~l~d~ 147 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASA-------GP-VSEVFAS--QPAAGECELCRETVTEADTKLQDK 147 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCccc-------ch-hhhhhhh--cccccccHHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999997411 01 111 111 12268899999999999988888
Q ss_pred hhhHHHHHHhhhhhccCCC
Q 010616 397 KQTKEKVLSYINELCDSLP 415 (506)
Q Consensus 397 ~~~~~~~~~~~~~~c~~~~ 415 (506)
+.++.++.+...+-|..++
T Consensus 148 ~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 148 PKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred hhHHHHHHHHHHhhccCCc
Confidence 6777777777777785554
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.48 E-value=0.083 Score=49.44 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=67.4
Q ss_pred CceeEeceecCCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCC
Q 010616 71 DEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG 150 (506)
Q Consensus 71 ~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~G 150 (506)
+...+.|....++-|+++..|-. |++..++|||-+.+.++...-. .--++.+ ..+.++.+.=.+|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~------~l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLN------SLDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCcc------ccCCceEEEccCC
Confidence 45578899989999999999985 9999999999999888654321 1234432 2234566666788
Q ss_pred cEE-EEEEEEEEEECcEEecccEEEEE
Q 010616 151 SIS-GFFSQDNVEVGDVVVKDQVFIEA 176 (506)
Q Consensus 151 s~~-G~~~~Dtv~~gg~~~~~~~Fg~~ 176 (506)
... .-+-.|.|.||++.+.|..--++
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhhee
Confidence 764 66788999999999988874333
No 34
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.24 E-value=0.11 Score=45.21 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=58.6
Q ss_pred CCceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEE-EEeCCCc--EEEEEE
Q 010616 81 MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE-INYGSGS--ISGFFS 157 (506)
Q Consensus 81 ~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~-~~Y~~Gs--~~G~~~ 157 (506)
....+++++.|+. +++.+++|||++..++....+. .+.- .... ...+. ...+.|. ..|...
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl----~~~~-------~~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGL----MRLI-------DKRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCC----cccc-------CcceEEEEecCCCcEEEeEEE
Confidence 3457899999986 8899999999999998654322 1111 0000 11122 2233332 457778
Q ss_pred EEEEEECcEEecccEEEEEEEeCCccccccceeeeeeccc
Q 010616 158 QDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (506)
Q Consensus 158 ~Dtv~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 197 (506)
.+.+.+++...+ ..|.+.. ....|+|||+-+
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~--------~~~~d~ILG~d~ 107 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLE--------DDDVDFLIGLDM 107 (124)
T ss_pred EEEEEECCEEee-eEEEEEC--------CCCcCEEecHHH
Confidence 889999998865 6665542 125689999964
No 35
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.08 E-value=0.24 Score=50.54 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=101.7
Q ss_pred EEEEEecCCC----ceE-EEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEE--EEeCCCcEEEEEEE
Q 010616 86 FGEIGIGSPP----QNF-SVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE--INYGSGSISGFFSQ 158 (506)
Q Consensus 86 ~~~i~IGtPp----Q~~-~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~--~~Y~~Gs~~G~~~~ 158 (506)
++.|+|=-|. |++ +|+|||||.-+=+..+--.. ..........+ .+.+.. ..|.+|..=|-+.+
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr~ 95 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTG-----GGAPLAECAQFASGYTWGSVRT 95 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccC-----CCcchhhhhhccCcccccceEE
Confidence 4555553332 555 49999999877665432110 00001111111 111111 35667766688899
Q ss_pred EEEEECcEEecccEEEEEEEeC-----------C---ccccccceeeeeeccccccccC----------------CC-Cc
Q 010616 159 DNVEVGDVVVKDQVFIEATREG-----------S---LTFLLARFDGIIGLGFREIAVG----------------DA-VP 207 (506)
Q Consensus 159 Dtv~~gg~~~~~~~Fg~~~~~~-----------~---~~~~~~~~dGIlGLg~~~~s~~----------------~~-~~ 207 (506)
.+|+|++....+.++.+..+.. + ........+||||+|.....-+ .. .-
T Consensus 96 AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sC 175 (370)
T PF11925_consen 96 ADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSC 175 (370)
T ss_pred EEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCe
Confidence 9999999876666666554320 0 0112456799999997543220 00 00
Q ss_pred hHHHHHHcCCCCCceEEEEecCCC------------CCCCCcEEEEC-CCCCCC-cccceEEEecccccceEEEEceEEE
Q 010616 208 VWDNMVEQGLVSEEVFSFWLNRDP------------DAEEGGEIVFG-GVDPKH-FKGKHTYVPVTKKGYWQFELGDILI 273 (506)
Q Consensus 208 ~~~~L~~qg~i~~~~FSl~L~~~~------------~~~~~G~L~fG-giD~~~-~~G~l~~~pl~~~~~w~v~l~~i~v 273 (506)
.-..+-....+..|+..|-.+.++ .....|.|+|| |..... ..+..+..+..+.++..- .+
T Consensus 176 t~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt-----~~ 250 (370)
T PF11925_consen 176 TSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT-----TF 250 (370)
T ss_pred ecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----Ee
Confidence 001111112255566555332211 23457999999 322221 122245555566665332 23
Q ss_pred CCeeeeeecCCceEEEcCCCCCeeeCHH
Q 010616 274 GNQSTGVCEGGCAAIVDSGTSLLAGPTP 301 (506)
Q Consensus 274 ~g~~~~~~~~~~~~ivDtgt~~~~lp~~ 301 (506)
+|.... ...||||+.-.++|+.
T Consensus 251 ~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 251 NGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred cCceee------eeeEecCCceeeccCC
Confidence 443332 2499999999999863
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.70 E-value=0.3 Score=39.82 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=46.9
Q ss_pred EEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCc---EEEEEEEEEE
Q 010616 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS---ISGFFSQDNV 161 (506)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs---~~G~~~~Dtv 161 (506)
|++++.|+. +++.+++||||+..++....+. ....+. .......+.=.+|. ..|.. .+.+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 578899986 8999999999999999765432 011110 11122333334444 35766 8999
Q ss_pred EECcEEecccEEEEEE
Q 010616 162 EVGDVVVKDQVFIEAT 177 (506)
Q Consensus 162 ~~gg~~~~~~~Fg~~~ 177 (506)
++++... ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9999874 35554443
No 37
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.42 E-value=0.52 Score=41.02 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.4
Q ss_pred ceEeCHHhhcceEEEEeCCCCeEEE
Q 010616 478 LWILGDVFMGVYHTVFDSGKLRIGF 502 (506)
Q Consensus 478 ~~ilG~~fl~~~y~vfD~~~~rIGf 502 (506)
..|||..||+.+-.+.|+.+.+|-|
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4699999999999999999998753
No 38
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.81 E-value=0.32 Score=43.09 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=24.7
Q ss_pred ceEeCHHhhcceEEEEeCCCCeEEEEe
Q 010616 478 LWILGDVFMGVYHTVFDSGKLRIGFAE 504 (506)
Q Consensus 478 ~~ilG~~fl~~~y~vfD~~~~rIGfA~ 504 (506)
..|||.++|+.+...-|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 479999999999999999999998864
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.08 E-value=4.5 Score=35.00 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=28.2
Q ss_pred cccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHH
Q 010616 260 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 260 ~~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
..+++.++ +.+||+.+. ++||||++.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~~-------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNVR-------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 34556555 467887554 89999999999999887765
No 40
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=91.71 E-value=0.19 Score=38.93 Aligned_cols=37 Identities=32% Similarity=0.697 Sum_probs=35.7
Q ss_pred cchhhhhHHHHHHHHhhhhhhHHHHHHhhhhhccCCC
Q 010616 379 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 415 (506)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 415 (506)
.|..|+.++..+++.+.++.+++.+.+.+.+.|..+|
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999999999999999988
No 41
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=90.51 E-value=0.12 Score=49.43 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=40.2
Q ss_pred hCCCccccccchhhhhhcchhhHHHHhhCCCCccccccccccccCCc
Q 010616 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGA 356 (506)
Q Consensus 310 ~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 356 (506)
.+.-..+...|+.+|++|...|+..|..+++|..||++++.||-...
T Consensus 162 ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~~~~ 208 (218)
T KOG1340|consen 162 CKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPPAAS 208 (218)
T ss_pred ccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCcccc
Confidence 34445566779999999999999999999999999999999995443
No 42
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=90.24 E-value=0.12 Score=39.98 Aligned_cols=37 Identities=54% Similarity=0.963 Sum_probs=34.2
Q ss_pred cccccchhhhhhcchhhHHHHhhCCCCcccccccccc
Q 010616 315 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 351 (506)
Q Consensus 315 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 351 (506)
.....|+.+++.|++.+++.+....+|+++|+.++.|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 4567799999999999999999999999999999987
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=88.59 E-value=2.7 Score=33.84 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=46.1
Q ss_pred EEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcEE-EEEEEE-EEEECc
Q 010616 88 EIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSIS-GFFSQD-NVEVGD 165 (506)
Q Consensus 88 ~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~~-G~~~~D-tv~~gg 165 (506)
.+.|.. +++++++|||++.+-+....+. . . ....+...+.=..|... -.-..+ .+.+|+
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~a~---~-----~---------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDLGP---K-----Q---------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHHhh---h-----c---------cCCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 355654 8999999999999999765442 0 0 01112233332333321 111123 699999
Q ss_pred EEecccEEEEEEEeCCccccccceeeeeeccc
Q 010616 166 VVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (506)
Q Consensus 166 ~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 197 (506)
....++ |..... . .++|||+-+
T Consensus 63 ~~~~~~-~~v~~~-~--------~~~lLG~df 84 (86)
T cd06095 63 HTVSHS-FLVVPN-C--------PDPLLGRDL 84 (86)
T ss_pred EEEEEE-EEEEcC-C--------CCcEechhh
Confidence 988854 444321 1 278999854
No 44
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=87.04 E-value=0.69 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.101 Sum_probs=19.7
Q ss_pred eEEEeeeeecCchhhhHHhhhhhHhhh
Q 010616 28 LRRIGLKKRRLDLHSLNAARITRKERY 54 (506)
Q Consensus 28 ~~~ipl~~~~~~~~~~~~~~~~~~~~~ 54 (506)
++||||+|.++.+..+.+.+...++++
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~flk 27 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEEFLK 27 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHHHHC
T ss_pred CEEEeccCCchHHHHHHHcCchHHHHH
Confidence 479999999999999999999888764
No 45
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=82.71 E-value=7.7 Score=32.77 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.7
Q ss_pred CceEeCHHhhcceEEEEeCCCCeE
Q 010616 477 PLWILGDVFMGVYHTVFDSGKLRI 500 (506)
Q Consensus 477 ~~~ilG~~fl~~~y~vfD~~~~rI 500 (506)
+..+||..||+++-.+.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 357999999999999999988753
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.39 E-value=2.4 Score=33.03 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=29.4
Q ss_pred CCceEEEEEEecCCCceEEEEecCCCCceEEeCCCC
Q 010616 81 MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (506)
Q Consensus 81 ~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C 116 (506)
....+++.+.||. +.+..++|||++...++...+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 3578999999997 999999999999999876544
No 47
>PF13650 Asp_protease_2: Aspartyl protease
Probab=77.39 E-value=3.6 Score=32.68 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=23.9
Q ss_pred EEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHH
Q 010616 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 271 i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
+.+||+.+. +++|||++.+.++.+.++++
T Consensus 3 v~vng~~~~-------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------EEEcCCCCcEEECHHHHHHc
Confidence 567776554 89999999999999888776
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=73.69 E-value=4.3 Score=33.35 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=23.5
Q ss_pred EEEEEecCCCceEEEEecCCCCceEEeCCCC
Q 010616 86 FGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (506)
Q Consensus 86 ~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C 116 (506)
+.+|.+.. +++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 56677876 899999999999988876544
No 49
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=71.00 E-value=6.1 Score=32.00 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=24.8
Q ss_pred EEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHH
Q 010616 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 271 i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
+.|+|+.+. ..||||++.+.++.+.+..+
T Consensus 5 ~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 577888775 79999999999999988765
No 50
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=70.74 E-value=7.2 Score=30.27 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.5
Q ss_pred EEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHH
Q 010616 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 271 i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
+.+++..+. +++|||++-.+++.++++.+
T Consensus 13 ~~I~g~~~~-------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------EEEeCCCcceecCHHHHHHh
Confidence 566776653 89999999999999998887
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=70.31 E-value=21 Score=32.64 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.0
Q ss_pred CceEEEcCCCCCeeeCHHHHHHHHHHh
Q 010616 284 GCAAIVDSGTSLLAGPTPVVTEINHAI 310 (506)
Q Consensus 284 ~~~~ivDtgt~~~~lp~~~~~~i~~~~ 310 (506)
...+++|||++..++..+..+.|.-..
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~L~~ 71 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLELPT 71 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhCCcc
Confidence 345899999999999999888875443
No 52
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=65.03 E-value=10 Score=30.37 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.2
Q ss_pred EEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHH
Q 010616 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 271 i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
+.+|++.+. ++||||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~-------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR-------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 566766554 89999999999999877665
No 53
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=64.07 E-value=9.5 Score=30.64 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=24.3
Q ss_pred EEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHH
Q 010616 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 271 i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
+.+||..+. .+||||.+.+.++.+.++.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 567777664 79999999999999988775
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=60.20 E-value=15 Score=31.96 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=43.5
Q ss_pred CceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCc--EEEEEEEE
Q 010616 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS--ISGFFSQD 159 (506)
Q Consensus 82 ~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs--~~G~~~~D 159 (506)
....|++++|+. ++++.++|||...+-+..+-+ ..|.-...-+. ..-...+|-|. ..|.+..-
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~~a---~r~gL~~lid~----------r~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSKSCA---ERCGLMRLIDK----------RFAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEHHHH---HHTTGGGGEEG----------GG-EE-------EEEEEEEEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCHHHH---HHcCChhhccc----------cccccccCCCcCceeEEEEEE
Confidence 356899999997 999999999999888854322 24443222211 01122344454 57999999
Q ss_pred EEEECcEEecccEEEEE
Q 010616 160 NVEVGDVVVKDQVFIEA 176 (506)
Q Consensus 160 tv~~gg~~~~~~~Fg~~ 176 (506)
.+.+|+..++ ..|-+.
T Consensus 87 ~l~ig~~~~~-~s~~Vl 102 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVL 102 (124)
T ss_dssp EEEETTEEEE-EEEEEE
T ss_pred EEEECCEEEE-EEEEEe
Confidence 9999986654 444433
No 55
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=59.38 E-value=13 Score=35.06 Aligned_cols=50 Identities=32% Similarity=0.493 Sum_probs=32.8
Q ss_pred CCcEEEEECCEEEEECcccceeeeccCccceeEeeeeeccCCCCCCCceEeCHHhhcceEEEEeCCCCeEEEE
Q 010616 431 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 503 (506)
Q Consensus 431 ~P~l~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfA 503 (506)
.+.+.+.++|..|.+|- +.+ . +.+-..|||.+|+|.|+=...++ .+|-|-
T Consensus 67 ~~~~~i~I~~~~F~IP~---iYq---------------~----~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~ 116 (201)
T PF02160_consen 67 AKNGKIQIADKIFRIPT---IYQ---------------Q----ESGIDIILGNNFLRLYEPFIQTE-DRIQFH 116 (201)
T ss_pred ecCceEEEccEEEeccE---EEE---------------e----cCCCCEEecchHHHhcCCcEEEc-cEEEEE
Confidence 45777888888877732 211 1 13346899999999987766664 356553
No 56
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=57.56 E-value=63 Score=28.43 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=50.3
Q ss_pred ceEEEEEEecCCCceEEEEecCCCCceEEeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCcE--EEEEEEEE
Q 010616 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSI--SGFFSQDN 160 (506)
Q Consensus 83 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs~--~G~~~~Dt 160 (506)
..-.+.+.|.+ ++..+++|+|++.-++...-.. +... ...+...+..+.-.+|.. .+....=.
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~~a~-------~~~l------~~~~l~~~~~V~~~g~~~~~~~~~~~~~ 84 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSSFAK-------KLGL------PLEPLPRPIVVSAPGGSINCEGVCPDVP 84 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHHHHH-------hcCC------EEEEccCeeEEecccccccccceeeeEE
Confidence 45677888887 8999999999999888543211 0000 111223344444333432 23333444
Q ss_pred EEECcEEecccEEEEEEEeCCccccccceeeeeeccc
Q 010616 161 VEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (506)
Q Consensus 161 v~~gg~~~~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 197 (506)
+.+++.... ..|-+. ....+|-|||+-+
T Consensus 85 ~~i~g~~~~-~dl~vl--------~l~~~DvILGm~W 112 (135)
T PF08284_consen 85 LSIQGHEFV-VDLLVL--------DLGGYDVILGMDW 112 (135)
T ss_pred EEECCeEEE-eeeEEe--------cccceeeEeccch
Confidence 556665543 333222 1345689999864
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.89 E-value=8.1 Score=32.02 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=12.4
Q ss_pred CcchhHHHHHHHHHHHHHhhhhhc
Q 010616 1 MEQKLLRSVFCLWVLASCLLLPAS 24 (506)
Q Consensus 1 M~~~~~~~~l~l~~l~~~~~~a~s 24 (506)
|..+.++++.++|+++++++++++
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 776665555455444444444443
No 58
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=56.42 E-value=16 Score=29.73 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=21.8
Q ss_pred EEEecCCCceEEEEecCCCCceEEeCCCC
Q 010616 88 EIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (506)
Q Consensus 88 ~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C 116 (506)
.+.|+ .|.+.+++|||++++-+.....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccccc
Confidence 35666 4999999999999999976543
No 59
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=51.85 E-value=12 Score=30.68 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=20.7
Q ss_pred EEECCeeeeeecCCceEEEcCCCCCeeeCHHHH
Q 010616 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 303 (506)
Q Consensus 271 i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~ 303 (506)
+.++|..+. ++||||++.++++.+.+
T Consensus 10 v~i~g~~i~-------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKIK-------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEEE-------EEEETTBSSEEESSGGS
T ss_pred EeECCEEEE-------EEEecCCCcceeccccc
Confidence 556777664 89999999999998644
No 60
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.82 E-value=46 Score=28.88 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.0
Q ss_pred EEEcCCCC-CeeeCHHHHHHH
Q 010616 287 AIVDSGTS-LLAGPTPVVTEI 306 (506)
Q Consensus 287 ~ivDtgt~-~~~lp~~~~~~i 306 (506)
.+||||.+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999988876
No 61
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=39.89 E-value=39 Score=32.01 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=29.0
Q ss_pred ccceEEEEceEEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHH
Q 010616 261 KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 261 ~~~w~v~l~~i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
+++|.++ ..|||+.+. .+||||.|.+.++++..+++
T Consensus 103 ~GHF~a~---~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 4555544 578888876 79999999999999988876
No 62
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=38.56 E-value=35 Score=27.97 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.0
Q ss_pred eEEEcCCCCCeeeCHHHHHHHH
Q 010616 286 AAIVDSGTSLLAGPTPVVTEIN 307 (506)
Q Consensus 286 ~~ivDtgt~~~~lp~~~~~~i~ 307 (506)
...+|||++...+|...+..+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4799999999999998887764
No 63
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=37.78 E-value=43 Score=29.20 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=23.0
Q ss_pred EEECCeeeeeecCCceEEEcCCCCCeeeCHHHHHHH
Q 010616 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (506)
Q Consensus 271 i~v~g~~~~~~~~~~~~ivDtgt~~~~lp~~~~~~i 306 (506)
+++||..+. |+||||+-.+.++...++++
T Consensus 29 ~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 577888775 89999999999999988874
No 64
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=36.70 E-value=42 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=21.8
Q ss_pred EEEEEecCCCceEEEEecCCCCceEEeCC
Q 010616 86 FGEIGIGSPPQNFSVIFDTGSSNLWVPSS 114 (506)
Q Consensus 86 ~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~ 114 (506)
...+.++.-..++.++|||||+.-++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44455555568999999999998888653
No 65
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=36.21 E-value=83 Score=32.21 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=29.4
Q ss_pred CCCeeeCHHHHHHHHHHhCCCccccccchhhhhhcchhhHHHHhhCCCCcccccccc
Q 010616 293 TSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIG 349 (506)
Q Consensus 293 t~~~~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 349 (506)
..++.+.+..|+++.+.|+ || +.+.|+++...+++|..++
T Consensus 317 rallVmnea~~e~~~n~in---------------FY--~~K~l~kK~~~~el~s~ln 356 (477)
T KOG2404|consen 317 RALLVMNEANYEAFGNNIN---------------FY--MFKKLFKKYESAELASALN 356 (477)
T ss_pred eeEEEecHhHHHHHhhhhh---------------hH--hHHHHHHHhhHHHHHHHhC
Confidence 3466778888888877663 33 6778888888888887776
No 66
>PRK10853 putative reductase; Provisional
Probab=30.39 E-value=52 Score=28.28 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=29.8
Q ss_pred CcccchhhhhHHHHHHH---------HhhhhhhHHHHHHhhhh
Q 010616 376 DSAVCSACEMAVVWVQN---------QLKQKQTKEKVLSYINE 409 (506)
Q Consensus 376 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 409 (506)
+.+.|+-|..|+.|+++ ..+++.+.+++.+++.+
T Consensus 6 ~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 6 GIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 56889999999999984 77889999999999864
No 67
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=29.43 E-value=51 Score=28.10 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=30.2
Q ss_pred CcccchhhhhHHHHHHH---------HhhhhhhHHHHHHhhhhh
Q 010616 376 DSAVCSACEMAVVWVQN---------QLKQKQTKEKVLSYINEL 410 (506)
Q Consensus 376 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 410 (506)
..+.|+-|..|..|+++ ..+++.+.+++++++.+.
T Consensus 6 ~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 6 EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 46789999999999974 788899999999998743
No 68
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=26.44 E-value=49 Score=28.11 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.7
Q ss_pred CcccchhhhhHHHHHH---------HHhhhhhhHHHHHHhhhhh
Q 010616 376 DSAVCSACEMAVVWVQ---------NQLKQKQTKEKVLSYINEL 410 (506)
Q Consensus 376 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 410 (506)
..+.|+-|..|+.|++ |..+++.|++++.+.+.+.
T Consensus 5 ~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 5 HNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 4678999999999987 4678899999999998753
No 69
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=25.17 E-value=76 Score=26.65 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=39.4
Q ss_pred EEEEecCCC----ceEEEEecCCCCceE-EeCCCCCCCcccccCCCcCCCCCCCceecCceEEEEeCCCc-EEEEEEEEE
Q 010616 87 GEIGIGSPP----QNFSVIFDTGSSNLW-VPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDN 160 (506)
Q Consensus 87 ~~i~IGtPp----Q~~~v~lDTGSs~~W-V~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Y~~Gs-~~G~~~~Dt 160 (506)
+++.++.|. -++.+++|||.+..- ++...-. .-...+.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 567787772 267899999998765 5432111 11111111 1244445665 456677899
Q ss_pred EEECcEEe
Q 010616 161 VEVGDVVV 168 (506)
Q Consensus 161 v~~gg~~~ 168 (506)
+.++|...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 70
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=24.49 E-value=58 Score=28.37 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=30.7
Q ss_pred CcccchhhhhHHHHHH---------HHhhhhhhHHHHHHhhhhh
Q 010616 376 DSAVCSACEMAVVWVQ---------NQLKQKQTKEKVLSYINEL 410 (506)
Q Consensus 376 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 410 (506)
+.+.|+-|..|+.|++ |.++++.+.+++..++.++
T Consensus 7 ~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 7 EKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNK 50 (126)
T ss_pred eCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHc
Confidence 5678999999999997 5788999999999998863
No 71
>PRK10026 arsenate reductase; Provisional
Probab=24.32 E-value=54 Score=29.23 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=30.9
Q ss_pred CCcccchhhhhHHHHHH---------HHhhhhhhHHHHHHhhhhh
Q 010616 375 GDSAVCSACEMAVVWVQ---------NQLKQKQTKEKVLSYINEL 410 (506)
Q Consensus 375 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 410 (506)
-..+.|+-|..|+.|++ |.++.+.|.+++..++.+.
T Consensus 7 Y~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 7 YHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 35688999999999997 5778899999999998754
No 72
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=23.54 E-value=70 Score=27.52 Aligned_cols=35 Identities=26% Similarity=0.653 Sum_probs=29.0
Q ss_pred CcccchhhhhHHHHHHH---------HhhhhhhHHHHHHhhhhh
Q 010616 376 DSAVCSACEMAVVWVQN---------QLKQKQTKEKVLSYINEL 410 (506)
Q Consensus 376 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 410 (506)
..+.|+-|..|..|+++ ..+++.+.+++.+++.+.
T Consensus 7 ~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 7 GNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred eCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 56899999999999986 567788888888887654
No 73
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=22.40 E-value=65 Score=27.24 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=29.3
Q ss_pred CcccchhhhhHHHHHHH---------HhhhhhhHHHHHHhhhhh
Q 010616 376 DSAVCSACEMAVVWVQN---------QLKQKQTKEKVLSYINEL 410 (506)
Q Consensus 376 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 410 (506)
..+.|+-|..|+.|+++ ..+.+.|++++..++..+
T Consensus 5 ~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~ 48 (112)
T cd03034 5 HNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKL 48 (112)
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHc
Confidence 46789999999999984 567889999999888755
No 74
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=21.82 E-value=86 Score=26.25 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=29.1
Q ss_pred CcccchhhhhHHHHHHH---------HhhhhhhHHHHHHhhhh
Q 010616 376 DSAVCSACEMAVVWVQN---------QLKQKQTKEKVLSYINE 409 (506)
Q Consensus 376 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 409 (506)
..+.|+-|..|..|+++ ..+++.|++++.+.+.+
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 45789999999999975 67888999999998864
No 75
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=21.45 E-value=3.4e+02 Score=22.22 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=17.9
Q ss_pred ceEEEEecCCCCceEEeCCCCC
Q 010616 96 QNFSVIFDTGSSNLWVPSSKCY 117 (506)
Q Consensus 96 Q~~~v~lDTGSs~~WV~~~~C~ 117 (506)
....+++|||+...-+|...|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3468999999999999877654
Done!