BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010617
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 263 bits (673), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/510 (31%), Positives = 263/510 (51%), Gaps = 60/510 (11%)
Query: 3 RPRVLVMPAPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYNHKRVVESLQGKNYLG-EQIH 61
+P V+++P P QGH+ PL + ++ L GF +TFVNT+YNHKR+++S K + G +
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFN 67
Query: 62 LVSIPDGMEPWEDRNDLGKLIEK-CLQVMPGKLE---ELIEEIN-SREDEKIDCFIADGN 116
SIPDG+ P E D+ + + C V L+ EL+ +N S + C ++D
Sbjct: 68 FESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCC 127
Query: 117 IGWSMEIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGMIPCHVIPYFPPANF 176
+ ++++ A++ + +++ SSA S+ V ++ GI IP F ++
Sbjct: 128 MSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGI-----------IP-FKDESY 175
Query: 177 NFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKI 236
+ C + + + + ++ I + N D +
Sbjct: 176 LTNGCLETKVDWIPGL-----------KNFRLKDIVDFIRTTNPNDIML---------EF 215
Query: 237 FFDLLERNTRAMIAVNFHFCNSTYELESEAF----TTFPELLPIGPLLA-------SNRL 285
F ++ +R + + N+ ELES+ +T P + PIGPL + ++L
Sbjct: 216 FIEVADRVNKDTTIL----LNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQL 271
Query: 286 GNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPFLWVV 345
+ W ED+ CL WL+ ++P SVVYV+FGS T++ Q E A GL CK+ FLW++
Sbjct: 272 DSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWII 331
Query: 346 RPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNG 405
RPD+ + + F +A RG + SW PQ +VLNHPSI FL+HCGWNST E + G
Sbjct: 332 RPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAG 391
Query: 406 IPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLG---NQDFKA 462
+P LCWP+F DQ + R+IC+ W++G++ D + + REE+ +++V+ + K
Sbjct: 392 VPMLCWPFFADQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQ 447
Query: 463 RALELKEKAMSSVREGGSSYKTFQNFLQWV 492
+A+ELK+KA + R GG SY ++ V
Sbjct: 448 KAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 146/528 (27%), Positives = 229/528 (43%), Gaps = 107/528 (20%)
Query: 4 PRVLVMPAPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYNHKRVVESLQGKNYLGEQIHL 62
P V ++P+P GH+IPL+EF++ L HG VTFV +G ++ L
Sbjct: 7 PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAG----------EGPPSKAQRTVL 56
Query: 63 VSIPDGME----PWEDRNDLGKLIEKCLQVMPGKLEELIEEINSREDEKIDCFIADGNIG 118
S+P + P D DL + ++ + N + D F+ G +
Sbjct: 57 DSLPSSISSVFLPPVDLTDLSSSTR-----IESRISLTVTRSNPELRKVFDSFVEGGRLP 111
Query: 119 WSM----------EIAKKMNVRGAVFWPSSAASVALVFRIPKLIDDGIIDSHGMIPCHVI 168
++ ++A + +V +F+P++A ++ +PKL D+ +
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKL-DETV------------ 158
Query: 169 PYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHI 228
+C R L ++ P++ + F P + +D +
Sbjct: 159 -----------SCEFRELTEPLML------PGCVPVAGKDFLD----PAQDRKDDAY--- 194
Query: 229 GDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELESEAFTTF-------PELLPIGPLLA 281
W L NT+ N+ +ELE A P + P+GPL+
Sbjct: 195 -KW---------LLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLV- 243
Query: 282 SNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILDQVQFQELALGLELCKRPF 341
+G E+S CLKWLD Q SV+YVSFGS L Q ELALGL ++ F
Sbjct: 244 --NIGKQEAK-QTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRF 300
Query: 342 LWVVRPDITTDANDRY-------------PEGFQERVAARGQMIS-WAPQLRVLNHPSIA 387
LWV+R + AN Y P GF ER RG +I WAPQ +VL HPS
Sbjct: 301 LWVIR-SPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTG 359
Query: 388 CFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIITREEI 447
FL+HCGWNST+E V +GIP + WP + +Q +N + + + L+ + G++ REE+
Sbjct: 360 GFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEV 419
Query: 448 KNKVDQVLGNQDFKA---RALELKEKAMSSVREGGSSYKTFQNF-LQW 491
V ++ ++ K + ELKE A +++ G+S K L+W
Sbjct: 420 ARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKW 467
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 189/414 (45%), Gaps = 60/414 (14%)
Query: 86 LQVMPGKLEELIEEINSREDEKIDCFIADGNIGWSMEIAKKMNVRGAVFWPSSAASVALV 145
++ M + +I+E + + I C + D + ++A++M+ + W + S+ L
Sbjct: 96 IKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSL-LT 154
Query: 146 FRIPKLIDD--GIIDSHGMIPCHVIPYFPPANFNFDACHSRSLLYATVIFFVLYSTSGTP 203
LI + G + H + V+P FP L A+ + + P
Sbjct: 155 HVYTDLIREKTGSKEVHDVKSIDVLPGFPE-------------LKASDLPEGVIKDIDVP 201
Query: 204 MSMQMFRIAPKMPEMNSRDCFWAHIGDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELE 263
+ + ++ ++P N+ +A+N F +E
Sbjct: 202 FATMLHKMGLELPRANA----------------------------VAIN-SFATIHPLIE 232
Query: 264 SEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGSFTILD 323
+E + F LL +GP + T ++ CL+WLDQ + SSVVY+SFGS
Sbjct: 233 NELNSKFKLLLNVGPFNLT-----TPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPP 287
Query: 324 QVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQLRVLNH 383
+ LA LE C PF+W R D ++ P+GF ER +G++++WAPQ+ +L H
Sbjct: 288 PHELTALAESLEECGFPFIWSFR----GDPKEKLPKGFLERTKTKGKIVAWAPQVEILKH 343
Query: 384 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDEGGIIT 443
S+ FL+H GWNS +E + G+P + P+FGDQ LN ++G+ D G++T
Sbjct: 344 SSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDN---GVLT 400
Query: 444 REEIKNKVDQVLGNQD---FKARALELKEKAMSSVREGGSSYKTFQNFLQWVKT 494
+E IK ++ + ++ + + ++LKE A +V + G+S F +Q V +
Sbjct: 401 KESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 145/297 (48%), Gaps = 28/297 (9%)
Query: 207 QMFRIAPKMPEMNSRDCFWAHI-GDWTSQKIFFDLLERNTRAMIAVNFHFCNSTYELE-- 263
++ P M ++ RD + G+ S +F +L R + + F NS EL+
Sbjct: 171 ELLNFIPGMSKVRFRDLQEGIVFGNLNS--LFSRMLHRMGQVLPKATAVFINSFEELDDS 228
Query: 264 -----SEAFTTFPELLPIGPLLASNRLGNTAGYFWCEDSNCLKWLDQQQPSSVVYVSFGS 318
T+ + P + + NT G CL+WL +++P+SVVY+SFG+
Sbjct: 229 LTNDLKSKLKTYLNIGPFNLITPPPVVPNTTG--------CLQWLKERKPTSVVYISFGT 280
Query: 319 FTILDQVQFQELALGLELCKRPFLWVVRPDITTDANDRYPEGFQERVAARGQMISWAPQL 378
T + L+ LE + PF+W +R A PEGF E+ G ++ WAPQ
Sbjct: 281 VTTPPPAEVVALSEALEASRVPFIWSLR----DKARVHLPEGFLEKTRGYGMVVPWAPQA 336
Query: 379 RVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLKFDRDE 438
VL H ++ F++HCGWNS E V+ G+P +C P+FGDQ LN R + D ++G+ R E
Sbjct: 337 EVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGV---RIE 393
Query: 439 GGIITREEIKNKVDQVLGNQ---DFKARALELKEKAMSSVREGGSSYKTFQNFLQWV 492
GG+ T+ + + DQ+L + + L+E A +V GSS + F + V
Sbjct: 394 GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 121/498 (24%), Positives = 209/498 (41%), Gaps = 79/498 (15%)
Query: 5 RVLVMPAPAQGHVIPLLEFSQCLAKHG-------FRVTFVNTDYNHKRVVESLQGKNYLG 57
++ +PAP GH+ LEF++ L H F + F + + L +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ---- 66
Query: 58 EQIHLVSIPDGMEPWEDRNDLGKLIE-KCLQVMPGKLEELIEEINSREDEKIDCFIADGN 116
QI L+ +P+ P +L K E L + + + I + K+ + D
Sbjct: 67 PQIQLIDLPEVEPP---PQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFF 123
Query: 117 IGWSMEIAKKMNVRGAVFWPSSAASVALVF-----RIPKLIDDGIIDSHGMIPCHVIPYF 171
+++ + + +F S+ ++L+ +I ++ DD D H ++ I
Sbjct: 124 CVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD-HQLLNIPGISNQ 182
Query: 172 PPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDW 231
P+N DAC ++ Y + +++A +
Sbjct: 183 VPSNVLPDACFNKDGGY-----------------IAYYKLAERF---------------- 209
Query: 232 TSQKIFFDLLERNTRAMIAVNFH-FCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAG 290
R+T+ +I F S+ + + P + +GPLL N
Sbjct: 210 -----------RDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK- 257
Query: 291 YFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDI 349
+ LKWLD+Q SVV++ FGS + Q +E+ALGL+ FLW
Sbjct: 258 LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS----- 312
Query: 350 TTDANDRYPEGFQE--RVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIP 407
+ +PEGF E + +G + WAPQ+ VL H +I F+SHCGWNS +E + G+P
Sbjct: 313 NSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVP 372
Query: 408 FLCWPYFGDQFLNERYICDFWKV--GLKFDRDEGG-IITREEIKNKVDQVLGNQDFKARA 464
L WP + +Q LN + W V GL+ D +G ++ EEI+ + ++ +
Sbjct: 373 ILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKK 432
Query: 465 L-ELKEKAMSSVREGGSS 481
+ E+KE + ++V +GGSS
Sbjct: 433 VQEMKEMSRNAVVDGGSS 450
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 121/498 (24%), Positives = 209/498 (41%), Gaps = 79/498 (15%)
Query: 5 RVLVMPAPAQGHVIPLLEFSQCLAKHG-------FRVTFVNTDYNHKRVVESLQGKNYLG 57
++ +PAP GH+ LEF++ L H F + F + + L +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ---- 66
Query: 58 EQIHLVSIPDGMEPWEDRNDLGKLIE-KCLQVMPGKLEELIEEINSREDEKIDCFIADGN 116
QI L+ +P+ P +L K E L + + + I + K+ + D
Sbjct: 67 PQIQLIDLPEVEPP---PQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFF 123
Query: 117 IGWSMEIAKKMNVRGAVFWPSSAASVALVF-----RIPKLIDDGIIDSHGMIPCHVIPYF 171
+++ + + +F S+ ++L+ +I ++ DD D H ++ I
Sbjct: 124 CVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD-HQLLNIPGISNQ 182
Query: 172 PPANFNFDACHSRSLLYATVIFFVLYSTSGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDW 231
P+N DAC ++ Y + +++A +
Sbjct: 183 VPSNVLPDACFNKDGGY-----------------IAYYKLAERF---------------- 209
Query: 232 TSQKIFFDLLERNTRAMIAVNFH-FCNSTYELESEAFTTFPELLPIGPLLASNRLGNTAG 290
R+T+ +I F S+ + + P + +GPLL N
Sbjct: 210 -----------RDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK- 257
Query: 291 YFWCEDSNCLKWLDQQQPSSVVYVSFGSFTI-LDQVQFQELALGLELCKRPFLWVVRPDI 349
+ LKWLD+Q SVV++ FGS + Q +E+ALGL+ FLW
Sbjct: 258 LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS----- 312
Query: 350 TTDANDRYPEGFQE--RVAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIP 407
+ +PEGF E + +G + WAPQ+ VL H +I F+SHCGWNS +E + G+P
Sbjct: 313 NSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVP 372
Query: 408 FLCWPYFGDQFLNERYICDFWKV--GLKFDRDEGG-IITREEIKNKVDQVLGNQDFKARA 464
L WP + +Q LN + W V GL+ D +G ++ EEI+ + ++ +
Sbjct: 373 ILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKK 432
Query: 465 L-ELKEKAMSSVREGGSS 481
+ E+KE + ++V +GGSS
Sbjct: 433 VQEMKEMSRNAVVDGGSS 450
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 374 WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLNERYICDFWKVGLK 433
W PQL +L S F++H G STME +SN +P + P +Q +N I + +G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRH 368
Query: 434 FDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEK 470
RD+ +T E+++ V V + R ++++
Sbjct: 369 IPRDQ---VTAEKLREAVLAVASDPGVAERLAAVRQE 402
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 370 QMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQ 417
++ W PQ +L HP F++H G N E + +GIP + P F DQ
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 365 VAARGQMISWAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQF 418
V A ++ SW PQ +L H + + H G +T+ + G+P L +P+ GD F
Sbjct: 290 VPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 374 WAPQLRVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFGDQFLN 420
W PQL +L + F++H G + EG++ P + P DQF N
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 281 ASNRLGNTAGYFWCEDSNCLKWL 303
+S + +GY WC+ NC+KW+
Sbjct: 214 SSELMQKVSGYQWCDIENCVKWM 236
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 418 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 477
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 67
Query: 478 GGSSYKTFQNFL 489
GS F+ FL
Sbjct: 68 DGSGTIDFEEFL 79
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal Muscle
Troponin-C
Length = 76
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 418 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 477
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 2 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 56
Query: 478 GGSSYKTFQNFL 489
GS F+ FL
Sbjct: 57 DGSGTIDFEEFL 68
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 418 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 477
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 67
Query: 478 GGSSYKTFQNFL 489
GS F+ FL
Sbjct: 68 DGSGTIDFEEFL 79
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 418 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 477
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 67
Query: 478 GGSSYKTFQNFL 489
GS F+ FL
Sbjct: 68 DGSGTIDFEEFL 79
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 418 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 477
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 10 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 64
Query: 478 GGSSYKTFQNFL 489
GS F+ FL
Sbjct: 65 DGSGTIDFEEFL 76
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 418 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 477
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 67
Query: 478 GGSSYKTFQNFL 489
GS F+ FL
Sbjct: 68 DGSGTIDFEEFL 79
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain Of
Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr, 40
Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle, Nmr,
Minimized Average Structure
Length = 90
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 418 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 477
FL+E I +F FD D GG I+ +E+ V ++LG K E + + V E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTK----EELDAIIEEVDE 67
Query: 478 GGSSYKTFQNFL 489
GS F+ FL
Sbjct: 68 DGSGTIDFEEFL 79
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 449 NKVDQVLGNQDFKARALELKEKAMSSVREGGSSYKTFQNFLQWVKTNALAHNSPVTG 505
NKVD + N+D+ ++ EK E G +K ++++L + +L H+ T
Sbjct: 88 NKVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYL--LTPKSLFHHRNFTS 142
>pdb|1NPQ|A Chain A, Structure Of A Rhodamine-Labeled N-Domain Troponin C
Mutant (Ca2+ Saturated) In Complex With Skeletal
Troponin I 115- 131
Length = 90
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 418 FLNERYICDFWKVGLKFDRDEGGIITREEIKNKVDQVLGNQDFKARALELKEKAMSSVRE 477
FL+E I +F FD D GG I+ +E+ V ++LG K EL + + V E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKEL-GTVMRMLGQNPTKC---EL-DAIICEVDE 67
Query: 478 GGSSYKTFQNFL 489
GS F+ FL
Sbjct: 68 DGSGTIDFEEFL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,856,840
Number of Sequences: 62578
Number of extensions: 682196
Number of successful extensions: 1655
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 28
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)